Query 001399
Match_columns 1085
No_of_seqs 411 out of 1905
Neff 5.2
Searched_HMMs 29240
Date Tue Mar 26 02:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001399.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001399hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 100.0 9.9E-51 3.4E-55 501.1 49.5 490 279-1037 67-571 (802)
2 1weo_A Cellulose synthase, cat 100.0 2.5E-45 8.5E-50 330.1 8.0 84 28-111 8-91 (93)
3 2z86_A Chondroitin synthase; G 99.5 6.2E-14 2.1E-18 167.5 17.8 128 352-604 89-217 (625)
4 1xhb_A Polypeptide N-acetylgal 99.4 1.6E-12 5.6E-17 150.3 19.7 116 352-586 25-143 (472)
5 2d7i_A Polypeptide N-acetylgal 99.4 1.6E-12 5.4E-17 155.1 17.2 116 352-586 108-224 (570)
6 3bcv_A Putative glycosyltransf 99.4 2.4E-12 8E-17 133.7 13.8 110 354-586 3-112 (240)
7 1qg8_A Protein (spore coat pol 99.4 3.8E-13 1.3E-17 141.2 7.2 124 356-602 1-129 (255)
8 2ffu_A Ppgalnact-2, polypeptid 99.3 3E-12 1E-16 149.7 13.4 113 352-586 62-174 (501)
9 2z86_A Chondroitin synthase; G 99.3 1.6E-11 5.4E-16 146.8 13.7 125 353-604 372-497 (625)
10 4fix_A UDP-galactofuranosyl tr 98.9 5.3E-09 1.8E-13 127.2 13.5 127 352-597 176-304 (657)
11 3ckj_A Putative uncharacterize 98.9 6.6E-09 2.3E-13 115.3 11.9 52 540-599 118-170 (329)
12 3l7i_A Teichoic acid biosynthe 98.8 3.2E-10 1.1E-14 138.7 0.0 110 356-586 2-111 (729)
13 2fy7_A Beta-1,4-galactosyltran 98.6 9.8E-08 3.3E-12 105.1 9.7 53 782-834 201-263 (287)
14 3f1y_A Mannosyl-3-phosphoglyce 98.1 1.9E-05 6.6E-10 90.3 12.7 50 540-597 166-216 (387)
15 2nxv_A ATP synthase subunits r 97.8 0.00028 9.6E-09 75.0 15.1 46 542-596 63-113 (249)
16 1e4u_A Transcriptional repress 96.5 0.0033 1.1E-07 56.3 5.9 52 36-90 11-62 (78)
17 1fo8_A Alpha-1,3-mannosyl-glyc 96.0 0.014 4.7E-07 66.0 9.0 44 355-403 1-44 (343)
18 2bo4_A Mannosylglycerate synth 94.9 0.14 4.7E-06 58.9 12.2 42 539-584 74-119 (397)
19 2zu9_A Mannosyl-3-phosphoglyce 93.0 0.34 1.2E-05 55.6 10.6 38 540-580 144-181 (394)
20 2d8s_A Cellular modulator of i 88.8 0.75 2.6E-05 41.2 6.4 55 33-90 12-70 (80)
21 2ea6_A Ring finger protein 4; 88.6 0.48 1.6E-05 39.8 4.8 55 34-90 13-68 (69)
22 1vyx_A ORF K3, K3RING; zinc-bi 88.6 0.38 1.3E-05 40.9 4.0 50 35-89 5-58 (60)
23 2wvl_A Mannosyl-3-phosphoglyce 88.0 1.3 4.6E-05 50.3 9.1 42 355-405 52-93 (391)
24 3ng2_A RNF4, snurf, ring finge 86.6 0.34 1.2E-05 41.1 2.7 55 34-90 8-63 (71)
25 2ect_A Ring finger protein 126 86.3 1.9 6.6E-05 37.3 7.4 53 34-91 13-65 (78)
26 1t1h_A Gspef-atpub14, armadill 86.2 0.51 1.7E-05 41.0 3.6 47 36-89 8-54 (78)
27 1g25_A CDK-activating kinase a 85.9 0.72 2.5E-05 38.7 4.3 53 36-90 3-55 (65)
28 2ecy_A TNF receptor-associated 85.0 0.52 1.8E-05 39.8 2.9 49 35-90 14-62 (66)
29 2xeu_A Ring finger protein 4; 84.5 0.4 1.4E-05 39.7 2.0 53 36-90 3-56 (64)
30 2ckl_B Ubiquitin ligase protei 83.9 0.77 2.6E-05 45.8 4.2 48 37-90 55-102 (165)
31 2ysl_A Tripartite motif-contai 83.2 0.97 3.3E-05 38.5 4.0 49 35-90 19-69 (73)
32 1iym_A EL5; ring-H2 finger, ub 82.7 1.5 5.1E-05 35.3 4.7 49 36-88 5-53 (55)
33 2csz_A Synaptotagmin-like prot 82.2 0.63 2.2E-05 41.7 2.4 62 10-75 1-62 (76)
34 2ecm_A Ring finger and CHY zin 82.0 1.3 4.6E-05 35.5 4.2 50 35-88 4-53 (55)
35 3fl2_A E3 ubiquitin-protein li 81.3 1.1 3.9E-05 42.5 4.0 47 37-90 53-99 (124)
36 2c2l_A CHIP, carboxy terminus 81.1 0.97 3.3E-05 48.0 3.9 49 34-89 206-254 (281)
37 1v87_A Deltex protein 2; ring- 80.9 1.6 5.4E-05 40.6 4.8 58 36-93 25-97 (114)
38 2ct2_A Tripartite motif protei 79.0 3.5 0.00012 36.2 6.2 53 35-90 14-68 (88)
39 1chc_A Equine herpes virus-1 r 78.8 2.1 7.2E-05 35.9 4.5 49 36-91 5-53 (68)
40 2f42_A STIP1 homology and U-bo 76.8 1.7 5.7E-05 44.9 3.9 48 35-89 105-152 (179)
41 2ecv_A Tripartite motif-contai 75.7 2.5 8.7E-05 36.6 4.3 48 36-90 19-71 (85)
42 2kiz_A E3 ubiquitin-protein li 75.6 4.5 0.00015 34.0 5.7 53 34-91 12-64 (69)
43 2ecw_A Tripartite motif-contai 74.4 3 0.0001 36.1 4.4 48 36-90 19-71 (85)
44 3lrq_A E3 ubiquitin-protein li 74.3 2.4 8.1E-05 38.9 3.9 47 37-89 23-69 (100)
45 2zet_C Melanophilin; complex, 73.8 0.69 2.4E-05 46.6 0.1 52 34-87 66-117 (153)
46 2kre_A Ubiquitin conjugation f 73.4 2.2 7.6E-05 39.6 3.4 47 35-89 28-74 (100)
47 3l11_A E3 ubiquitin-protein li 73.3 1.5 5.2E-05 41.0 2.3 48 36-90 15-62 (115)
48 2kr4_A Ubiquitin conjugation f 73.3 2.2 7.6E-05 38.2 3.3 47 35-89 13-59 (85)
49 2djb_A Polycomb group ring fin 72.8 7.5 0.00026 33.1 6.5 49 36-91 15-63 (72)
50 2gvi_A Conserved hypothetical 69.8 1.3 4.4E-05 46.5 1.0 29 34-72 170-202 (204)
51 1x4j_A Ring finger protein 38; 68.9 2.8 9.5E-05 36.1 2.8 52 35-91 22-73 (75)
52 2y43_A E3 ubiquitin-protein li 68.1 4.2 0.00014 36.9 4.0 47 37-90 23-69 (99)
53 3hct_A TNF receptor-associated 68.0 3.3 0.00011 39.0 3.4 47 37-90 19-65 (118)
54 1z6u_A NP95-like ring finger p 67.6 4 0.00014 40.4 4.1 47 37-90 79-125 (150)
55 1wgm_A Ubiquitin conjugation f 67.6 3.8 0.00013 37.9 3.6 46 36-89 22-68 (98)
56 2csy_A Zinc finger protein 183 67.2 9.5 0.00032 33.2 6.0 47 35-89 14-60 (81)
57 2l0b_A E3 ubiquitin-protein li 66.8 3.9 0.00013 36.8 3.4 50 35-89 39-88 (91)
58 2ep4_A Ring finger protein 24; 66.6 8.2 0.00028 32.8 5.4 52 35-91 14-65 (74)
59 2d8t_A Dactylidin, ring finger 66.6 6.1 0.00021 33.6 4.5 49 34-90 13-61 (71)
60 2yur_A Retinoblastoma-binding 66.4 8 0.00027 33.2 5.3 50 35-90 14-64 (74)
61 2ecl_A Ring-box protein 2; RNF 66.3 5.1 0.00017 35.4 4.1 56 34-90 13-76 (81)
62 3vk6_A E3 ubiquitin-protein li 64.3 3.7 0.00013 38.6 2.8 48 38-91 3-50 (101)
63 1rmd_A RAG1; V(D)J recombinati 62.2 6 0.00021 36.9 4.0 48 36-90 23-70 (116)
64 2ecn_A Ring finger protein 141 62.0 5.7 0.0002 33.5 3.5 48 35-91 14-61 (70)
65 2ckl_A Polycomb group ring fin 61.8 5.7 0.0002 36.6 3.7 48 36-90 15-62 (108)
66 2k16_A Transcription initiatio 61.7 5 0.00017 35.1 3.1 53 35-91 17-72 (75)
67 1jm7_B BARD1, BRCA1-associated 61.5 5.7 0.00019 37.3 3.7 45 36-89 22-66 (117)
68 1jm7_A BRCA1, breast cancer ty 61.0 6.4 0.00022 36.2 3.8 47 37-90 22-70 (112)
69 4ayc_A E3 ubiquitin-protein li 60.9 5.5 0.00019 38.5 3.6 45 38-90 55-99 (138)
70 2egp_A Tripartite motif-contai 60.6 3.7 0.00013 35.3 2.0 48 36-90 12-65 (79)
71 2ct0_A Non-SMC element 1 homol 59.6 4.5 0.00016 35.8 2.4 47 37-89 16-63 (74)
72 2ysj_A Tripartite motif-contai 59.6 7.9 0.00027 31.9 3.8 43 35-84 19-63 (63)
73 3hcs_A TNF receptor-associated 58.6 6 0.0002 39.5 3.4 47 37-90 19-65 (170)
74 3ztg_A E3 ubiquitin-protein li 57.1 11 0.00038 33.4 4.6 49 35-89 12-61 (92)
75 1zbd_B Rabphilin-3A; G protein 54.9 6.4 0.00022 38.7 2.8 37 34-73 53-90 (134)
76 3d00_A Tungsten formylmethanof 54.9 3.8 0.00013 42.6 1.3 26 34-71 161-186 (191)
77 3dpl_R Ring-box protein 1; ubi 54.7 10 0.00036 35.5 4.2 54 35-89 36-100 (106)
78 1xwh_A Autoimmune regulator; P 53.3 5.8 0.0002 34.1 2.0 58 31-96 3-63 (66)
79 2l43_A N-teminal domain from h 52.8 7.8 0.00027 35.3 2.9 58 29-88 18-76 (88)
80 3vth_A Hydrogenase maturation 52.0 6 0.0002 49.1 2.6 58 34-91 109-196 (761)
81 4ap4_A E3 ubiquitin ligase RNF 51.7 6.3 0.00021 36.9 2.2 55 35-91 6-61 (133)
82 4ap4_A E3 ubiquitin ligase RNF 51.6 4.7 0.00016 37.8 1.3 54 35-90 71-125 (133)
83 2y1n_A E3 ubiquitin-protein li 51.0 9.2 0.00032 43.9 3.7 48 37-91 333-380 (389)
84 3nw0_A Non-structural maintena 50.1 11 0.00037 40.4 3.9 49 36-90 180-229 (238)
85 2ea5_A Cell growth regulator w 49.5 20 0.00068 30.7 4.8 45 34-90 13-58 (68)
86 2ku3_A Bromodomain-containing 49.4 6.7 0.00023 34.5 1.8 56 30-87 10-66 (71)
87 1bor_A Transcription factor PM 49.4 18 0.00063 29.4 4.4 45 36-91 6-50 (56)
88 2js4_A UPF0434 protein BB2007; 47.7 1.9 6.4E-05 38.1 -2.0 43 55-102 8-50 (70)
89 3h0g_L DNA-directed RNA polyme 47.2 12 0.00041 32.4 2.9 30 34-65 19-48 (63)
90 3knv_A TNF receptor-associated 47.1 6 0.0002 38.8 1.2 46 36-88 31-76 (141)
91 2hf1_A Tetraacyldisaccharide-1 46.8 2.7 9.2E-05 36.9 -1.2 45 55-104 8-52 (68)
92 2vje_A E3 ubiquitin-protein li 44.6 10 0.00035 32.0 2.1 50 34-89 6-56 (64)
93 2l5u_A Chromodomain-helicase-D 44.2 21 0.0007 30.2 4.0 47 33-86 8-57 (61)
94 2ecj_A Tripartite motif-contai 44.0 38 0.0013 26.9 5.5 43 35-84 14-58 (58)
95 3ky9_A Proto-oncogene VAV; cal 42.9 11 0.00038 45.0 2.9 36 34-72 527-563 (587)
96 2vrw_B P95VAV, VAV1, proto-onc 42.8 12 0.00041 42.3 3.0 35 34-71 355-390 (406)
97 2kdx_A HYPA, hydrogenase/ureas 42.6 5.2 0.00018 38.2 -0.0 31 54-91 72-103 (119)
98 2ecg_A Baculoviral IAP repeat- 42.6 14 0.00048 31.9 2.8 43 36-90 25-68 (75)
99 2jr6_A UPF0434 protein NMA0874 39.6 4.1 0.00014 35.7 -1.1 41 64-104 12-52 (68)
100 3v43_A Histone acetyltransfera 38.4 28 0.00097 32.7 4.4 52 36-87 5-64 (112)
101 2co8_A NEDD9 interacting prote 38.4 31 0.001 30.3 4.4 62 31-95 10-79 (82)
102 1x4u_A Zinc finger, FYVE domai 37.7 41 0.0014 30.0 5.1 39 31-72 9-47 (84)
103 2d8y_A Eplin protein; LIM doma 37.4 75 0.0026 28.1 6.9 35 28-62 7-49 (91)
104 2jny_A Uncharacterized BCR; st 37.2 4.6 0.00016 35.3 -1.2 44 55-103 10-53 (67)
105 1m3v_A FLIN4, fusion of the LI 35.8 30 0.001 32.6 4.1 24 64-89 56-80 (122)
106 4g9i_A Hydrogenase maturation 35.5 9.8 0.00033 47.3 0.8 57 34-90 104-190 (772)
107 3a43_A HYPD, hydrogenase nicke 35.5 8.1 0.00028 38.1 0.1 13 78-90 107-119 (139)
108 1wim_A KIAA0161 protein; ring 35.4 20 0.00069 32.1 2.7 49 36-88 5-62 (94)
109 1tot_A CREB-binding protein; z 34.7 16 0.00053 30.3 1.7 32 36-73 6-38 (52)
110 1mm2_A MI2-beta; PHD, zinc fin 34.5 29 0.001 29.3 3.4 47 34-87 7-56 (61)
111 2yu4_A E3 SUMO-protein ligase 34.3 29 0.00098 31.4 3.6 46 36-87 7-59 (94)
112 2pk7_A Uncharacterized protein 34.1 4.1 0.00014 35.8 -2.0 35 70-104 18-52 (69)
113 2lri_C Autoimmune regulator; Z 33.4 32 0.0011 29.7 3.5 46 34-86 10-58 (66)
114 1we9_A PHD finger family prote 32.2 20 0.00068 30.2 2.0 54 35-91 5-62 (64)
115 2xjy_A Rhombotin-2; oncoprotei 32.1 27 0.00093 32.9 3.2 45 38-88 31-76 (131)
116 2gmg_A Hypothetical protein PF 31.5 16 0.00056 34.6 1.4 26 56-87 68-93 (105)
117 1m4f_A Hepcidin; strand-loop-s 31.5 4.7 0.00016 29.2 -1.7 23 62-86 3-25 (26)
118 3ttc_A HYPF, transcriptional r 31.4 14 0.00047 45.2 1.2 54 35-88 16-99 (657)
119 1f62_A Transcription factor WS 30.6 30 0.001 27.8 2.7 45 38-86 2-49 (51)
120 1twf_L ABC10-alpha, DNA-direct 30.1 21 0.00072 31.4 1.8 25 37-63 29-53 (70)
121 2dj7_A Actin-binding LIM prote 29.9 37 0.0013 29.7 3.4 38 29-66 8-53 (80)
122 3lqh_A Histone-lysine N-methyl 29.9 28 0.00095 35.9 3.0 54 35-88 1-64 (183)
123 2gai_A DNA topoisomerase I; zi 29.8 11 0.00039 45.7 0.1 45 38-87 574-621 (633)
124 3t6p_A Baculoviral IAP repeat- 29.7 24 0.00083 39.7 2.7 43 36-90 295-338 (345)
125 3htk_C E3 SUMO-protein ligase 29.6 43 0.0015 36.5 4.5 50 34-89 179-231 (267)
126 4a0k_B E3 ubiquitin-protein li 29.6 13 0.00045 35.7 0.5 53 36-89 48-111 (117)
127 2cup_A Skeletal muscle LIM-pro 29.3 34 0.0012 30.8 3.2 23 63-88 54-76 (101)
128 2vje_B MDM4 protein; proto-onc 28.7 27 0.00092 29.3 2.2 47 36-90 7-56 (63)
129 1fp0_A KAP-1 corepressor; PHD 28.6 68 0.0023 29.4 5.0 52 29-87 18-72 (88)
130 1rut_X Flinc4, fusion protein 26.2 49 0.0017 33.5 4.0 24 64-89 56-80 (188)
131 2puy_A PHD finger protein 21A; 25.5 16 0.00056 30.6 0.3 49 35-90 4-55 (60)
132 1w4r_A Thymidine kinase; type 24.8 20 0.00069 37.3 0.9 35 37-71 152-191 (195)
133 2ysm_A Myeloid/lymphoid or mix 24.4 43 0.0015 31.2 3.0 49 34-86 5-56 (111)
134 3u5n_A E3 ubiquitin-protein li 23.5 37 0.0013 35.2 2.6 47 35-88 6-55 (207)
135 1dl6_A Transcription factor II 23.5 73 0.0025 26.8 3.9 14 75-88 27-40 (58)
136 1x61_A Thyroid receptor intera 23.3 72 0.0025 26.7 4.0 9 63-71 54-62 (72)
137 2orw_A Thymidine kinase; TMTK, 23.2 26 0.00089 35.3 1.3 35 37-71 138-178 (184)
138 2e72_A POGO transposable eleme 22.5 31 0.001 28.4 1.3 15 77-91 11-25 (49)
139 3e2i_A Thymidine kinase; Zn-bi 22.4 9.8 0.00034 40.4 -2.1 37 37-73 163-210 (219)
140 2cor_A Pinch protein; LIM doma 22.3 61 0.0021 28.1 3.4 37 32-68 11-54 (79)
141 2xqn_T Testin, TESS; metal-bin 21.6 66 0.0023 30.1 3.7 25 62-89 50-74 (126)
142 3o36_A Transcription intermedi 21.6 40 0.0014 34.2 2.3 46 35-87 3-51 (184)
143 2kn9_A Rubredoxin; metalloprot 21.4 29 0.00099 31.5 1.1 16 29-44 20-35 (81)
144 3v43_A Histone acetyltransfera 21.2 50 0.0017 31.0 2.8 46 38-86 63-111 (112)
145 2j6a_A Protein TRM112; transla 20.8 15 0.00052 36.5 -1.0 34 68-101 99-132 (141)
146 1wge_A Hypothetical protein 26 20.6 34 0.0012 31.1 1.4 29 36-65 30-62 (83)
147 6rxn_A Rubredoxin; electron tr 20.6 28 0.00096 28.3 0.7 8 80-87 32-39 (46)
148 1lko_A Rubrerythrin all-iron(I 20.4 20 0.00068 36.9 -0.2 10 79-88 172-181 (191)
149 3q80_A 2-C-methyl-D-erythritol 20.0 86 0.0029 32.8 4.5 28 558-585 100-127 (231)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=100.00 E-value=9.9e-51 Score=501.07 Aligned_cols=490 Identities=21% Similarity=0.329 Sum_probs=378.1
Q ss_pred HHHHHHHHHHHHHhhheeeecccCCc-----hhHHHHHHHHHHHHHHHHHHhhcccccccccchhHhHHhhhcCCCCCCC
Q 001399 279 RVVIILRLIILGFFLQYRVTHPVKDA-----YPLWLTSVICEIWFALSWLLDQFPKWYPVNRETYLDRLALRYDREGEPS 353 (1085)
Q Consensus 279 R~~i~~~l~~l~~yl~wRi~~~~~~a-----~~lWl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~e~~~~~~ 353 (1085)
.+++++.+++.++|++||++.+++.. +++|++++++|+++.+.|++..+..+.|..|...++ ..++
T Consensus 67 ~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~~~ 137 (802)
T 4hg6_A 67 FLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQPE 137 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CCTT
T ss_pred HHHHHHHHHHHHHHHHHHhheecCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC---------CCcc
Confidence 34577777788999999999887632 467888999999999999999999999998865422 2356
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001399 354 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433 (1085)
Q Consensus 354 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~P 433 (1085)
++|.|+|+||||| |++.++.+|+.|++++|||.+++.|+|+|||+++-|.+.
T Consensus 138 ~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------- 189 (802)
T 4hg6_A 138 ELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------- 189 (802)
T ss_dssp TCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC-------------------------
T ss_pred CCCcEEEEEEECC---CCHHHHHHHHHHHHhccCCCCcEEEEEEECCCCcccccc-------------------------
Confidence 7999999999998 999999999999999999999999999999999855431
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001399 434 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 513 (1085)
Q Consensus 434 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g 513 (1085)
..|+.+++..+ .++ .+++++++
T Consensus 190 --------------~d~~i~~~~~~---~~~----~l~~~~~~------------------------------------- 211 (802)
T 4hg6_A 190 --------------PDPELAQKAQE---RRR----ELQQLCRE------------------------------------- 211 (802)
T ss_dssp --------------SSHHHHHHHHH---HHH----HHHHHHHH-------------------------------------
T ss_pred --------------CCHHHHHHHHh---hhH----HHHHHHHh-------------------------------------
Confidence 11222222111 111 22223211
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcE
Q 001399 514 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKT 592 (1085)
Q Consensus 514 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~v 592 (1085)
.++.|+.|++ +++.||||+|.+++. +++|||+++|||++ +.|++|++++.+| .|| ++
T Consensus 212 ---------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----~v 269 (802)
T 4hg6_A 212 ---------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP----DL 269 (802)
T ss_dssp ---------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----SC
T ss_pred ---------cCcEEEEecC----CCCcchHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHHhcCC----Ce
Confidence 0278999988 677899999999996 69999999999998 5899999999999 588 89
Q ss_pred EEEecCccccCCCcc-------cccccchhhhhhhhccccccCCCccccccCceehhhhhcCCCCCCcccCCCCcccccc
Q 001399 593 CYVQFPQRFDGIDLH-------DRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALYGYDPVLTEEDLEPNIIVKG 665 (1085)
Q Consensus 593 a~VQ~PQ~F~nid~~-------Dr~~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 665 (1085)
++||+|+.+.|.++. .++.+++..||...+.+.+.+++++++|++++|||+++
T Consensus 270 ~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al-------------------- 329 (802)
T 4hg6_A 270 FLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL-------------------- 329 (802)
T ss_dssp CEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH--------------------
T ss_pred EEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHHHHHhhHhhcCCceecccchhhhHHHH--------------------
Confidence 999999999988742 44567788999999999999999999999999999777
Q ss_pred cCCCCCCCCCCCchhhhhHhhhhcccCCCccccchhhhhccCCchhhHHhhhhhHHHhhhcCCcHHHHHHHHhhhCCCCC
Q 001399 666 CCGPRKKGKGSNKKYIDKKRAMKRTESTVPIFNMEDIEEGVEGYDDERSLLMSQKSLEKRFGQSPVFIAATFMEQGGIPP 745 (1085)
Q Consensus 666 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG~p~ 745 (1085)
+++||+++
T Consensus 330 ------------------------------------------------------------------------~~vGgf~~ 337 (802)
T 4hg6_A 330 ------------------------------------------------------------------------DEAGGFAG 337 (802)
T ss_dssp ------------------------------------------------------------------------HHHTTCCC
T ss_pred ------------------------------------------------------------------------HHcCCcCC
Confidence 35677665
Q ss_pred CCCchhhHHHHHHhhcccccccCccccccceecccccchHHHHHHHHHCCcEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001399 746 TTNPASLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPPRPAFKGSAPINLSDRLNQVLR 825 (1085)
Q Consensus 746 ~~~~~~~~~ea~~v~sC~YE~~T~WG~evGW~ygsvTEDi~Tg~rLh~rGWrsvY~~~~~aaf~GlaP~tl~~~lkQR~R 825 (1085)
++++||.+++++++++|||++|+++... ++.+|+|+.++++||.|
T Consensus 338 ---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~~~--~~~~p~t~~~~~~Qr~R 382 (802)
T 4hg6_A 338 ---------------------------------ETITEDAETALEIHSRGWKSLYIDRAMI--AGLQPETFASFIQQRGR 382 (802)
T ss_dssp ---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCCCE--EECCCCSHHHHHHHHHH
T ss_pred ---------------------------------CCcchHHHHHHHHHHcCCeEEEecCCEE--EecCCCCHHHHHHHHHH
Confidence 4789999999999999999999976554 89999999999999999
Q ss_pred HhhcchhHhhhhcCccccccCCCCCccchhhhhhcchhhhhhHHHHHHHHHHHHHHHhcccchhhhhhHHHHHHHHH-HH
Q 001399 826 WALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPLTSIPLIAYCTLPAFCLLTNKFIIPEISNFASMWFILL-FI 904 (1085)
Q Consensus 826 WA~G~lQIllsr~~Pl~~g~~~~L~l~QRL~Yl~~~ly~l~sl~~liylllP~l~Ll~G~~iip~~s~~~~~~fi~l-fl 904 (1085)
|++|.+|+++ +++|++ .+++++.||+.|+...++++.+++.++++++|+++++++..++......++.+++.. ++
T Consensus 383 W~~G~~q~l~-~~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~~l~ 458 (802)
T 4hg6_A 383 WATGMMQMLL-LKNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGYLAV 458 (802)
T ss_dssp HHHHHHHHHH-HSCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHH
T ss_pred HHccHHHHHH-HhCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhcCHHHHHHHHHHHHHH
Confidence 9999999998 457877 678999999999999999999999999999999999999888765433333332222 22
Q ss_pred HHHHHHHHHhhhcCCccccccccchhhhhhhHHHHHHHHHHHHHH-HHcCCCCCeEeccCCCCCCcCccceeeeccccch
Q 001399 905 SIFATGILEIRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLK-VLAGIDTNFTVTSKASDDDGDFAELYVFKWTSLL 983 (1085)
Q Consensus 905 s~~~~~iLe~~wsG~s~~~wWr~eq~W~I~~vs~~LfAv~~aLlk-~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~l~ 983 (1085)
...+...+ +.+.. ..|| ++.++.+.+ ++ .+.+++. .+++++.+|+||+|+...+..+ + + .++
T Consensus 459 ~~~~~~~~---~~~~r-~~~~-~~l~~~~~~----~~-~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~~-----~-~-~~~ 521 (802)
T 4hg6_A 459 SFLVQNAL---FARQR-WPLV-SEVYEVAQA----PY-LARAIVTTLLRPRSARFAVTAKDETLSENY-----I-S-PIY 521 (802)
T ss_dssp HHHHHHHH---HTTTS-CTTH-HHHHHHHHH----HH-HHHHHHHHHHSTTCCCCCCCCCCCCCSSCC-----B-C-TTC
T ss_pred HHHHHHHH---hcCcH-HHHH-HHHHHHHHH----HH-HHHHHHHHHhCCCCCcceECCCCccccccc-----h-h-hHH
Confidence 22222222 22111 1122 233322211 11 2333333 3467889999999998644332 1 3 477
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhh
Q 001399 984 IPPTTVLIVNLVGIVAGVSWAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLL 1037 (1085)
Q Consensus 984 iP~~~Llilnligiv~Gi~~~i~~~~~~w~~l~g~l~~~~Wvv~~L~Pfl~gL~ 1037 (1085)
.|++++++++++++++|++++..... +..+.+++++|.++|++.+.-++.
T Consensus 522 ~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~ 571 (802)
T 4hg6_A 522 RPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALR 571 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCC----ccchhhhhhHHHHHHHHHHHHHHH
Confidence 89999999999999999998875432 345678999999999999988884
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=100.00 E-value=2.5e-45 Score=330.15 Aligned_cols=84 Identities=74% Similarity=1.475 Sum_probs=81.9
Q ss_pred CCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcCccc
Q 001399 28 PKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEEDDID 107 (1085)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~~~d 107 (1085)
+|||+++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||+++|
T Consensus 8 ~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GDe~e~d~d 87 (93)
T 1weo_A 8 PKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGDEDEEDID 87 (93)
T ss_dssp SSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTSCCCCCSC
T ss_pred CCcccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccccCCCCccccccccccc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 001399 108 DLEN 111 (1085)
Q Consensus 108 d~~~ 111 (1085)
|+++
T Consensus 88 D~~~ 91 (93)
T 1weo_A 88 SGPS 91 (93)
T ss_dssp CCCS
T ss_pred cccc
Confidence 8764
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.54 E-value=6.2e-14 Score=167.46 Aligned_cols=128 Identities=19% Similarity=0.199 Sum_probs=99.4
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
+..+|.|+|+||||| |+ ..+.+|+.|+++.+||. .+.|+|.|||+++-|.+.+.+
T Consensus 89 ~~~~p~vsviIp~~n---~~-~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~~~-------------------- 143 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---RA-KILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIVRE-------------------- 143 (625)
T ss_dssp -CCCCCEEEEEEESS---CH-HHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHHHT--------------------
T ss_pred cccCCcEEEEEecCC---cH-HHHHHHHHHHHhhccCC-CeEEEEEeCCCchhHHHHHHH--------------------
Confidence 456799999999998 74 88999999999999986 789999999998632221100
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
+.
T Consensus 144 -----------------------------------------~~------------------------------------- 145 (625)
T 2z86_A 144 -----------------------------------------FE------------------------------------- 145 (625)
T ss_dssp -----------------------------------------TT-------------------------------------
T ss_pred -----------------------------------------hh-------------------------------------
Confidence 00
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 590 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~ 590 (1085)
.-+++.|+.+++ +.+.||+|+|.+++. +.++||+++|+|++ +.|++|.+++.+|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------hcCCeEEEEeCC----CCcchhHHHHHHHHh----CCcCEEEEECCCCC-CCHHHHHHHHHHHhcCC----
Confidence 002478888764 345699999999996 68999999999998 58999999999886 56
Q ss_pred cEEEEecCccccCC
Q 001399 591 KTCYVQFPQRFDGI 604 (1085)
Q Consensus 591 ~va~VQ~PQ~F~ni 604 (1085)
.+++|+..+.+.+.
T Consensus 204 ~~~~~g~~~~~~~~ 217 (625)
T 2z86_A 204 NVALIGPRKYIDTS 217 (625)
T ss_dssp TEEEECCEEEECCT
T ss_pred ceEEEEeeeeccCc
Confidence 78888877766544
No 4
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=99.45 E-value=1.6e-12 Score=150.25 Aligned_cols=116 Identities=18% Similarity=0.124 Sum_probs=92.8
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh-hHHHHHHHHHHhhhhhhhhhhcCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAML-TFEALSETAEFARKWVPFCKKHNIEP 430 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~l-t~~al~Ea~~fA~~WvPFCkk~~iep 430 (1085)
+..+|.|.|+||||| |+...+.+||-|+++.+||.....|+|.|||+++- |.+.|.
T Consensus 25 ~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l~-------------------- 81 (472)
T 1xhb_A 25 PDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPLE-------------------- 81 (472)
T ss_dssp CSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CcCCCCeEEEEEeCC---CCHHHHHHHHHHHHhcCcHhHceEEEEEECCCCcHHHHHHHH--------------------
Confidence 467999999999999 88789999999999999997667999999999861 222211
Q ss_pred CCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhc
Q 001399 431 RAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLG 510 (1085)
Q Consensus 431 R~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~ 510 (1085)
++++
T Consensus 82 -----------------------------------------~~~~----------------------------------- 85 (472)
T 1xhb_A 82 -----------------------------------------SYVK----------------------------------- 85 (472)
T ss_dssp -----------------------------------------HHHH-----------------------------------
T ss_pred -----------------------------------------HHHH-----------------------------------
Confidence 1110
Q ss_pred CCCCCCCCCCCCC-cEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 001399 511 RSGGLDTDGNELP-RLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DP 586 (1085)
Q Consensus 511 ~~g~~d~~~~~lP-~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp 586 (1085)
++| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. .+|++|.+++..+. +|
T Consensus 86 ----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 ----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp ----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred ----------HCCCcEEEEECCCCCC-----hHHHHHHHHHh----ccCCeEEEECCCeE-eCccHHHHHHHHHHhCC
Confidence 113 488888877555 99999999996 68999999999998 68999999999885 45
No 5
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=99.42 E-value=1.6e-12 Score=155.09 Aligned_cols=116 Identities=19% Similarity=0.090 Sum_probs=92.1
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh-HHHHHHHHHHhhhhhhhhhhcCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLT-FEALSETAEFARKWVPFCKKHNIEP 430 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt-~~al~Ea~~fA~~WvPFCkk~~iep 430 (1085)
++.+|.|.|+||||| |+...+.+||.|+++..||...+.|+|.|||+++-| .+.|.
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l~-------------------- 164 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPLE-------------------- 164 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHHH--------------------
T ss_pred CCCCCCeEEEEEECC---CCHHHHHHHHHHHHhcCCccCcEEEEEEECCCCcHHHHHHHH--------------------
Confidence 356899999999999 877899999999999999965568999999998743 22111
Q ss_pred CCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhc
Q 001399 431 RAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLG 510 (1085)
Q Consensus 431 R~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~ 510 (1085)
++++
T Consensus 165 -----------------------------------------~~~~----------------------------------- 168 (570)
T 2d7i_A 165 -----------------------------------------DYMA----------------------------------- 168 (570)
T ss_dssp -----------------------------------------HHHT-----------------------------------
T ss_pred -----------------------------------------HHHH-----------------------------------
Confidence 1110
Q ss_pred CCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 511 RSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 511 ~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
+.|++.++..+++.| +++|+|.+++. +.|+||+.||+|.++ +|++|.+++..+.+.
T Consensus 169 ----------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~~-~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCEA-NVNWLPPLLDRIARN 224 (570)
T ss_dssp ----------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEEE-CTTCSHHHHHHHHHC
T ss_pred ----------hCCeEEEEECCCCCC-----HHHHHHHHHHh----cCCCEEEEEcCCccc-cccHHHHHHHHHHhC
Confidence 114588888776544 99999999996 689999999999984 899999999988653
No 6
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=99.38 E-value=2.4e-12 Score=133.72 Aligned_cols=110 Identities=18% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCc
Q 001399 354 QLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAP 433 (1085)
Q Consensus 354 ~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~P 433 (1085)
..|.|.|+||||| ++ ..+.+++.|+++.+|| .+.++|.|||+++-|.+.+.+
T Consensus 3 ~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~~---------------------- 54 (240)
T 3bcv_A 3 LIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICDD---------------------- 54 (240)
T ss_dssp CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHHH----------------------
T ss_pred CCCcEEEEEecCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECCCCcCHHHHHHH----------------------
Confidence 5689999999998 65 6788999999999998 588999999998744332211
Q ss_pred hhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCC
Q 001399 434 EFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSG 513 (1085)
Q Consensus 434 e~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g 513 (1085)
+.++
T Consensus 55 ---------------------------------------~~~~------------------------------------- 58 (240)
T 3bcv_A 55 ---------------------------------------YAAQ------------------------------------- 58 (240)
T ss_dssp ---------------------------------------HHHH-------------------------------------
T ss_pred ---------------------------------------HHhh-------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 514 GLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 514 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
.|++.|+.. +. ..+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 --------~~~i~~i~~-~n-----~G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 --------YPNIKVIHK-KN-----AGLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp --------CSSEEEEEC-CC-----CCHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred --------CCCEEEEEC-CC-----CChHHHHHHHHHH----cCCCEEEEECCCCc-CCHHHHHHHHHHHHhc
Confidence 134777753 22 3499999999996 68999999999998 5899999999998764
No 7
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=99.37 E-value=3.8e-13 Score=141.19 Aligned_cols=124 Identities=15% Similarity=0.287 Sum_probs=93.7
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||||| ++ ..+.+|+.|+++++|| .+.++|.|||+++-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CeEEEEEEcCC---CH-HHHHHHHHHHHhccCC--ceEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999998 65 7889999999999998 688999999998733322110
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
++ .
T Consensus 51 -------------------------------------~~-----------------------------------~----- 53 (255)
T 1qg8_A 51 -------------------------------------FL-----------------------------------N----- 53 (255)
T ss_dssp -------------------------------------GG-----------------------------------G-----
T ss_pred -------------------------------------Hh-----------------------------------h-----
Confidence 00 0
Q ss_pred CCCCCCCCcEEEEeccCCCCC----CcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCCC
Q 001399 516 DTDGNELPRLVYVSREKRPGF----QHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYGK 590 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~----~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g~ 590 (1085)
-|++.|+..+.. +. ....+++|+|.+++. ++|+||+.+|+|.++ .|++|.+.+..|. +|
T Consensus 54 ------~~~i~~i~~~~~-~~~~~~~n~G~~~a~N~gi~~----a~g~~i~~lD~Dd~~-~~~~l~~~~~~~~~~~---- 117 (255)
T 1qg8_A 54 ------DNRVRFYQSDIS-GVKERTEKTRYAALINQAIEM----AEGEYITYATDDNIY-MPDRLLKMVRELDTHP---- 117 (255)
T ss_dssp ------STTEEEEECCCC-SHHHHHSSCHHHHHHHHHHHH----CCCSEEEEEETTEEE-CTTHHHHHHHHHHHCT----
T ss_pred ------cCCEEEEecccc-cccccccccCHHHHHHHHHHH----cCCCEEEEeCCCCcc-ChHHHHHHHHHHHhCC----
Confidence 024778877610 00 123499999999996 699999999999984 7999999999885 56
Q ss_pred cEEEEecCcccc
Q 001399 591 KTCYVQFPQRFD 602 (1085)
Q Consensus 591 ~va~VQ~PQ~F~ 602 (1085)
++++|.+...+.
T Consensus 118 ~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 EKAVIYSASKTY 129 (255)
T ss_dssp TCCEEEEEEEEE
T ss_pred CceEEEeceEEE
Confidence 678888876655
No 8
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=99.35 E-value=3e-12 Score=149.68 Aligned_cols=113 Identities=17% Similarity=0.123 Sum_probs=90.8
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR 431 (1085)
+..+|.|.|+||||| |+...+.+||.|+++..||...+.|+|.|||+++-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CcCCCCEEEEEEeCc---CcHHHHHHHHHHHHhhCchhhceeEEEEECCCCchHHHHH----------------------
Confidence 457999999999999 8866899999999999999655789999999986322100
Q ss_pred CchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcC
Q 001399 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGR 511 (1085)
Q Consensus 432 ~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~ 511 (1085)
+ +
T Consensus 117 -----------------------------------------~-~------------------------------------ 118 (501)
T 2ffu_A 117 -----------------------------------------L-G------------------------------------ 118 (501)
T ss_dssp -----------------------------------------G-G------------------------------------
T ss_pred -----------------------------------------H-h------------------------------------
Confidence 0 0
Q ss_pred CCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 512 SGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 512 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
+.|++.|+..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------cCCCEEEEECCCCcC-----HHHHHHHHHHh----cCCCEEEEECCCcc-cCccHHHHHHHHHHhC
Confidence 123588888776444 89999999996 68999999999998 5799999999988654
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=99.27 E-value=1.6e-11 Score=146.76 Aligned_cols=125 Identities=22% Similarity=0.285 Sum_probs=95.8
Q ss_pred CCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCC
Q 001399 353 SQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRA 432 (1085)
Q Consensus 353 ~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~ 432 (1085)
...|.|.|+||||| ++ ..+.++|.|+++++|| .+.++|.|||+++-|.+.+.+
T Consensus 372 ~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~~--------------------- 424 (625)
T 2z86_A 372 KRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQE--------------------- 424 (625)
T ss_dssp CSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHHH---------------------
T ss_pred ccCCeEEEEEeCCC---CH-HHHHHHHHHHHhCcCC--CeEEEEEECcCChhHHHHHHH---------------------
Confidence 45789999999998 54 6789999999999998 578999999998744332211
Q ss_pred chhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCC
Q 001399 433 PEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRS 512 (1085)
Q Consensus 433 Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~ 512 (1085)
+.+
T Consensus 425 ----------------------------------------~~~------------------------------------- 427 (625)
T 2z86_A 425 ----------------------------------------HYA------------------------------------- 427 (625)
T ss_dssp ----------------------------------------HHT-------------------------------------
T ss_pred ----------------------------------------HHh-------------------------------------
Confidence 100
Q ss_pred CCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCc
Q 001399 513 GGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKK 591 (1085)
Q Consensus 513 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~ 591 (1085)
..|++.|+. ++. ..+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..| .+| +
T Consensus 428 --------~~~~i~~~~-~~n-----~G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~ 484 (625)
T 2z86_A 428 --------NHPRVRFIS-QKN-----KGIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL----S 484 (625)
T ss_dssp --------TCTTEEEEE-ECC-----CCHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----T
T ss_pred --------hCCcEEEEe-CCC-----CCHHHHHHHHHHh----cCCCEEEEECCCcc-cChhHHHHHHHHHHhCC----C
Confidence 013477775 332 3499999999996 68999999999998 5899999999877 577 6
Q ss_pred EEEEecCccccCC
Q 001399 592 TCYVQFPQRFDGI 604 (1085)
Q Consensus 592 va~VQ~PQ~F~ni 604 (1085)
+++|.+...+.+.
T Consensus 485 ~~~v~~~~~~~~~ 497 (625)
T 2z86_A 485 LACVYTTNRNIDR 497 (625)
T ss_dssp CSEEEEEEEEECT
T ss_pred eeEEEeeeEEECC
Confidence 8888887665543
No 10
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=98.90 E-value=5.3e-09 Score=127.19 Aligned_cols=127 Identities=15% Similarity=0.135 Sum_probs=88.6
Q ss_pred CCCCCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCc-EEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCC
Q 001399 352 PSQLAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKV-SCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEP 430 (1085)
Q Consensus 352 ~~~lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl-~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iep 430 (1085)
+..-|.|.|+||||| + ...+.++|-|+++..|+.++. .|+|.|||.++-+-
T Consensus 176 ~~~~pkVSVVIptYN---~-~~~L~~~L~SL~~qt~~~~~~~EIIVVDNgStD~s~------------------------ 227 (657)
T 4fix_A 176 APGTANIAVGIPTFN---R-PADCVNALRELTADPLVDQVIGAVIVPDQGERKVRD------------------------ 227 (657)
T ss_dssp CCSCCCEEEECCBSS---C-HHHHHHHHHHHTTSHHHHTTEEEEEEEECSSSCGGG------------------------
T ss_pred CCCCCeEEEEEEecC---C-HHHHHHHHHHHHcCccccCCCCEEEEEECcCCCccc------------------------
Confidence 345689999999998 5 468999999999999966555 89999999875100
Q ss_pred CCchhhhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhc
Q 001399 431 RAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLG 510 (1085)
Q Consensus 431 R~Pe~YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~ 510 (1085)
.+.+. +. .++ .
T Consensus 228 ------------------~~~~~-----------e~-------~~~-~-------------------------------- 238 (657)
T 4fix_A 228 ------------------HPDFP-----------AA-------AAR-L-------------------------------- 238 (657)
T ss_dssp ------------------STTHH-----------HH-------HHH-H--------------------------------
T ss_pred ------------------hHHHH-----------HH-------HHh-c--------------------------------
Confidence 00000 00 000 0
Q ss_pred CCCCCCCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc-CCCCC
Q 001399 511 RSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM-DPAYG 589 (1085)
Q Consensus 511 ~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~-Dp~~g 589 (1085)
-|++.|+..+ .. ..|||.|.+++...-.++++||+.+|.|.+ ..|++|.+.+.+|. +|
T Consensus 239 -----------~~~I~vI~~~-N~-----G~a~a~N~Gl~~A~g~~~~dyIlfLD~D~~-~~pd~L~~ll~~l~~~~--- 297 (657)
T 4fix_A 239 -----------GSRLSIHDQP-NL-----GGSGGYSRVMYEALKNTDCQQILFMDDDIR-LEPDSILRVLAMHRFAK--- 297 (657)
T ss_dssp -----------GGGEEEEECC-CC-----HHHHHHHHHHHHHHHHCCCSEEEEECSSEE-ECTHHHHHHHHHHHHBS---
T ss_pred -----------CCCEEEEECC-CC-----CHHHHHHHHHHHHHhcCCCCEEEEECCCCc-cChhHHHHHHHHHHhCC---
Confidence 0247787654 23 379999999986321237899999999998 57999999999885 44
Q ss_pred CcEEEEec
Q 001399 590 KKTCYVQF 597 (1085)
Q Consensus 590 ~~va~VQ~ 597 (1085)
+++.|+.
T Consensus 298 -~~~~vg~ 304 (657)
T 4fix_A 298 -APMLVGG 304 (657)
T ss_dssp -SCCEEEE
T ss_pred -CcEEEEe
Confidence 5666654
No 11
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function; HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB: 3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Probab=98.87 E-value=6.6e-09 Score=115.26 Aligned_cols=52 Identities=13% Similarity=0.018 Sum_probs=43.4
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHh-hcCCCCCCcEEEEecCc
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCF-MMDPAYGKKTCYVQFPQ 599 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~f-f~Dp~~g~~va~VQ~PQ 599 (1085)
.|++|+|.+++. ++|+||+.+|+|.+...|++|.+.+.. +.+| ++++|+...
T Consensus 118 G~~~a~n~g~~~----a~gd~i~~lD~D~~~~~p~~l~~l~~~l~~~~----~~~~v~g~~ 170 (329)
T 3ckj_A 118 GKGEALWRSLAA----SRGDIVVFVDSDLINPHPMFVPWLVGPLLTGD----GVHLVKSFY 170 (329)
T ss_dssp SHHHHHHHHHHH----CCCSEEEECCTTEESCCTTHHHHHHHHHHSCS----SCCEEEEEE
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCCCcChHHHHHHHHHHHhCC----CccEEEEEe
Confidence 499999999996 689999999999873478999999987 4677 677777743
No 12
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=98.84 E-value=3.2e-10 Score=138.73 Aligned_cols=110 Identities=15% Similarity=0.162 Sum_probs=0.0
Q ss_pred CceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhhcCCCCCCchh
Q 001399 356 APVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTFEALSETAEFARKWVPFCKKHNIEPRAPEF 435 (1085)
Q Consensus 356 p~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt~~al~Ea~~fA~~WvPFCkk~~iepR~Pe~ 435 (1085)
|.|.|+||||| ++ ..+..||-|+++++|| .+.|+|.|||+++-|.+.+.+.
T Consensus 2 p~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~----------------------- 52 (729)
T 3l7i_A 2 NKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA----------------------- 52 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceEEEEEEcCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCCcHHHHHHHH-----------------------
Confidence 77999999998 65 6789999999999999 6789999999987444322210
Q ss_pred hhhcccccccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccccCCCCCCCCCCCCCCcchhhhhhcCCCCC
Q 001399 436 YFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKMPEEGWTMQDGTPWPGNNPRDHPGMIQVFLGRSGGL 515 (1085)
Q Consensus 436 YFs~k~d~~~~~~~~~f~~err~mkreYee~k~ri~~l~~~~~~~p~~~w~m~dg~~w~g~~~~dhp~iiqv~~~~~g~~ 515 (1085)
+++ ++
T Consensus 53 --------------------------------------~~~------------------------~~------------- 57 (729)
T 3l7i_A 53 --------------------------------------IKD------------------------YD------------- 57 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------HHh------------------------CC-------------
Confidence 000 00
Q ss_pred CCCCCCCCcEEEEeccCCCCCCcCcchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001399 516 DTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMDP 586 (1085)
Q Consensus 516 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~Dp 586 (1085)
+++.|+..++.. .+++|.|.+++. ++|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 58 -------~~i~~i~~~~n~-----G~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~ 111 (729)
T 3l7i_A 58 -------KNIRFIDLDENS-----GHAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT 111 (729)
T ss_dssp -----------------------------------------------------------------------
T ss_pred -------CCEEEEECCCCC-----CHHHHHHHHHHh----ccCCEEEEECCCCC-CChhHHHHHHHHhcCC
Confidence 135566655422 389999999985 68999999999998 5899999999988755
No 13
>2fy7_A Beta-1,4-galactosyltransferase 1; M339H mutant, APO enzyme; HET: PGE; 1.70A {Homo sapiens} PDB: 2aec_A* 2aes_A* 2ae7_A* 2ah9_A* 2agd_A* 2fya_A* 2fyb_A* 3ee5_A* 2fyc_B* 1tw1_A* 1tw5_A* 1tvy_A* 1nmm_B* 1o0r_A* 1yro_B* 1nf5_B* 1nhe_B* 1nkh_B* 1nqi_B* 1nwg_B* ...
Probab=98.58 E-value=9.8e-08 Score=105.08 Aligned_cols=53 Identities=11% Similarity=-0.085 Sum_probs=40.6
Q ss_pred cchHHHHHHHHHCCcEEEEeCCCCCcc----------cccCCCCHHHHHHHHHHHhhcchhHh
Q 001399 782 TEDILTGFKMHARGWISIYCMPPRPAF----------KGSAPINLSDRLNQVLRWALGSIEIL 834 (1085)
Q Consensus 782 TEDi~Tg~rLh~rGWrsvY~~~~~aaf----------~GlaP~tl~~~lkQR~RWA~G~lQIl 834 (1085)
.||.++.+||+.+||++.+..+....+ ....|+.+..+.+||.||+.+++..+
T Consensus 201 ~ED~Dl~~Rl~~~G~~i~~~~~~~~~~~~i~H~~~~~~~~n~~~~~~l~~~~~~~~~~Gl~~~ 263 (287)
T 2fy7_A 201 GEDDDIFNRLVFRGMSISRPNAVVGTTRHIRHSRDKKNEPNPQRFDRIAHTKETMLSDGLNSL 263 (287)
T ss_dssp CHHHHHHHHHHHTTCCCBCCCTTTCEEEECC---------CCCCCCCHHHHHHHTTTSSGGGC
T ss_pred cchHHHHHHHHHcCCeEEecCcccceeEEEecCCCcccCCCHHHHHHHhhcccEEcCCCcccC
Confidence 499999999999999887443211111 23578999999999999999999887
No 14
>3f1y_A Mannosyl-3-phosphoglycerate synthase; GT-A type glycosyltransferase, GT-81, mannosyl-3-phosphoglyc synthase, GDP-mannose, transferas; 2.20A {Rubrobacter xylanophilus} PDB: 3kia_A* 3o3p_A*
Probab=98.05 E-value=1.9e-05 Score=90.29 Aligned_cols=50 Identities=22% Similarity=0.199 Sum_probs=41.1
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhh-cCCCCCCcEEEEec
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFM-MDPAYGKKTCYVQF 597 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff-~Dp~~g~~va~VQ~ 597 (1085)
.|++|+|.+++. ..|+||+.+|+|....+|++|.+.+..+ .+| ++.+|..
T Consensus 166 G~g~A~n~G~~~----A~gd~i~~lDaD~~~~~p~~L~~l~~~l~~~p----~~d~v~G 216 (387)
T 3f1y_A 166 GKGDAMWRALSV----TRGDLVLYIDADTRDFRPQLAYGVLGPVLEVP----GVRFVKA 216 (387)
T ss_dssp SHHHHHHHHTTT----CCSSEEEECCTTCSSCCTHHHHTTHHHHHHST----TCCEEEE
T ss_pred CHHHHHHHHHHh----cCCCEEEEEcCCCCcCCHHHHHHHHHHHHHCC----CceEEEE
Confidence 399999999985 6899999999999734899999999877 466 4556655
No 15
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon, glycosyl transferase, rossmann F sulphur SAD, transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Probab=97.79 E-value=0.00028 Score=75.04 Aligned_cols=46 Identities=11% Similarity=0.138 Sum_probs=39.1
Q ss_pred hhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHHHhhcC-----CCCCCcEEEEe
Q 001399 542 AGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD-----PAYGKKTCYVQ 596 (1085)
Q Consensus 542 AGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~D-----p~~g~~va~VQ 596 (1085)
|.|+|.+++. +.|+||+.||+|.++ .+++|.+.+-++.. | +++.|-
T Consensus 63 a~a~N~Gi~~----A~g~yl~fln~D~~~-~~~~l~~l~~~~~~~~~~~~----~vg~vg 113 (249)
T 2nxv_A 63 FSWHKQMLPR----CKGRYVIFCHEDVEL-VDRGYDDLVAAIEALEEADP----KWLVAG 113 (249)
T ss_dssp TTHHHHHGGG----CCSSEEEEEETTEEC-SSCCHHHHHHHHHHHHHHCT----TEEEEE
T ss_pred HHHHHHHHHh----cCCCEEEEECCCccc-CccHHHHHHHHHHhcccCCC----CeeEEe
Confidence 7899999986 689999999999985 89999999998864 7 676663
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.50 E-value=0.0033 Score=56.28 Aligned_cols=52 Identities=27% Similarity=0.770 Sum_probs=43.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-+.+. .+.-.|.+| .||.-.|+.|+..-.++++..||.|+.+|..
T Consensus 11 ~~~CpICle~~~--~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 11 PVECPLCMEPLE--IDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCBCTTTCCBCC--TTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred CCcCCccCccCc--ccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 458999999763 233458888 9999999999987777788999999999975
No 17
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=96.02 E-value=0.014 Score=65.95 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=37.5
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001399 355 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAM 403 (1085)
Q Consensus 355 lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~ 403 (1085)
|+.+-|+|+||| -| . +..++-|++++..+.++..++|+|||...
T Consensus 1 ~~~~pViI~~yN---Rp-~-l~~~L~sL~~~~p~~~~~~iivsdDgs~~ 44 (343)
T 1fo8_A 1 LAVIPILVIACD---RS-T-VRRCLDKLLHYRPSAELFPIIVSQDCGHE 44 (343)
T ss_dssp CCCCCEEEEESS---CT-T-HHHHHHHHHHHCSCTTTSCEEEEECTTCH
T ss_pred CCcccEEEEECC---cH-H-HHHHHHHHHhcCCCcCCcEEEEEECCCCH
Confidence 355779999998 77 6 99999999999977777889999999764
No 18
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=94.89 E-value=0.14 Score=58.94 Aligned_cols=42 Identities=17% Similarity=-0.012 Sum_probs=34.2
Q ss_pred CcchhhhHHHH----HhccccCCCcEEEEecCCCCCCchHHHHHHHHhhc
Q 001399 539 HKKAGAMNALI----RVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMM 584 (1085)
Q Consensus 539 h~KAGalNall----rvSav~tng~~Il~lDcD~~~~~~~~Lr~am~ff~ 584 (1085)
..|.+|||+++ +. .+|++|+.+|||-.-.+|+.+.+.+..+.
T Consensus 74 ~GkG~Al~~G~~~Al~~----a~gd~vv~mDADlq~~~P~~i~~Ll~~l~ 119 (397)
T 2bo4_A 74 PGKGDGMNTALRYFLEE----TQWERIHFYDADITSFGPDWITKAEEAAD 119 (397)
T ss_dssp SSHHHHHHHHHHHHHHH----CCCSEEEECCTTCSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh----CCCCEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 35999999999 54 78999999999984237899999887663
No 19
>2zu9_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, glycosyltransferase, GT55, GDP, cytoplasm, magnesium, transferase; HET: GDP; 2.00A {Pyrococcus horikoshii} PDB: 2zu7_A* 2zu8_A*
Probab=93.02 E-value=0.34 Score=55.65 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=29.4
Q ss_pred cchhhhHHHHHhccccCCCcEEEEecCCCCCCchHHHHHHH
Q 001399 540 KKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAM 580 (1085)
Q Consensus 540 ~KAGalNallrvSav~tng~~Il~lDcD~~~~~~~~Lr~am 580 (1085)
.|..||-+.+.++. ...+++|+.+|||-+ .|.++.+..
T Consensus 144 GKG~Am~aGl~~A~-~~~gd~Vv~~DaDl~--iP~~v~~~~ 181 (394)
T 2zu9_A 144 GKGEGMLVGLLLAK-AIGAEYVGFVDADNY--IPGAVNEYV 181 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCSEEEECCSCBS--CHHHHHHHH
T ss_pred ChHHHHHHHHHHHh-hCCCCEEEEEeCCCC--CHHHHHHHH
Confidence 59999999998632 128999999999997 477776544
No 20
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.83 E-value=0.75 Score=41.23 Aligned_cols=55 Identities=22% Similarity=0.491 Sum_probs=40.0
Q ss_pred CCCCccccccCCccccCCCCCeeeecCCCC---CCcchhhhHhHhhc-CCCCCCCCcccccc
Q 001399 33 NLNGQTCQICGDNVGLTAMGDIFVACNECA---FPVCRPCYEYERKD-GTQSCPQCKTRYKR 90 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~---fpvCr~Cyeyerke-G~~~CpqCkt~Ykr 90 (1085)
......|.||-++. ++++.+..+| .|. --+.+.|.+-=.+. ++..||.|++.|.-
T Consensus 12 ~~~~~~C~IC~~~~--~~~~~l~~pC-~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 12 PSSQDICRICHCEG--DDESPLITPC-HCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp CTTSCCCSSSCCCC--CSSSCEECSS-SCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCCCeEcCccc--cCCCeeEecc-ccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 34566999998874 3445567778 563 67999999655544 45799999999974
No 21
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.64 E-value=0.48 Score=39.78 Aligned_cols=55 Identities=25% Similarity=0.670 Sum_probs=39.7
Q ss_pred CCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.....|.||-+...-.. .++..+.- .|+--.|+.|.+--.+. +..||-|++++.+
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEEC-SSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeC-CCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence 34568999999865443 34444443 78999999999655444 6899999998753
No 22
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=88.56 E-value=0.38 Score=40.89 Aligned_cols=50 Identities=26% Similarity=0.540 Sum_probs=36.4
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCC---CcchhhhHhHhhc-CCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAF---PVCRPCYEYERKD-GTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~f---pvCr~Cyeyerke-G~~~CpqCkt~Yk 89 (1085)
.+..|.||-++ .++++..+| .|.= -|=+.|.+-=.++ |+..||.||++|+
T Consensus 5 ~~~~CrIC~~~----~~~~l~~PC-~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 5 DVPVCWICNEE----LGNERFRAC-GCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp SCCEETTTTEE----CSCCCCCSC-CCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCEeEEeecC----CCCceecCc-CCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 45689999876 234567888 6643 4557788655554 7899999999996
No 23
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=87.97 E-value=1.3 Score=50.30 Aligned_cols=42 Identities=19% Similarity=0.090 Sum_probs=32.6
Q ss_pred CCceEEEEecCCCCCCChHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001399 355 LAPVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLT 405 (1085)
Q Consensus 355 lp~VDvfV~T~dp~kEp~~v~~nTvls~la~dYP~~kl~~yvsDDG~~~lt 405 (1085)
+..+-|+||+|| |.. +++-++++.-|. ...+.|.|||..+-|
T Consensus 52 ~~klSIVVPvYN---Ee~----~lLesVl~qi~~--d~eIIlVdDGS~D~s 93 (391)
T 2wvl_A 52 LEQTAIVVPTRN---ERL----KLLEGVLSGIPH--EALILVASNSSPDRF 93 (391)
T ss_dssp HTTEEEEEEESS---CCH----HHHHHHHHTSCT--TSEEEEEECCCHHHH
T ss_pred HhceEEEEeccC---cHH----HHHHHHHhcCCC--CceEEEEECCCCCCh
Confidence 567899999999 875 357777777665 577999999997644
No 24
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=86.59 E-value=0.34 Score=41.10 Aligned_cols=55 Identities=25% Similarity=0.670 Sum_probs=40.1
Q ss_pred CCCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.....|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeC-CCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 34568999999875543 45544444 89999999999654444 4799999998863
No 25
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=86.35 E-value=1.9 Score=37.27 Aligned_cols=53 Identities=21% Similarity=0.503 Sum_probs=37.1
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
.....|.||-+.+.. ++..+.- .|+--.|+.|.+--.+ .+..||-|+.++...
T Consensus 13 ~~~~~C~IC~~~~~~---~~~~~~~-~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 13 GSGLECPVCKEDYAL---GESVRQL-PCNHLFHDSCIVPWLE-QHDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSSCCCTTTTSCCCT---TSCEEEC-TTSCEEETTTTHHHHT-TTCSCTTTCCCCCCS
T ss_pred CCCCCCeeCCccccC---CCCEEEe-CCCCeecHHHHHHHHH-cCCcCcCcCCccCCc
Confidence 456699999998632 3333222 4788899999964443 447999999998654
No 26
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=86.25 E-value=0.51 Score=41.02 Aligned_cols=47 Identities=15% Similarity=0.217 Sum_probs=37.9
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.-.|.||.+.. -++.+. .|+.-.|+.|.+--.+.|+..||.|+++..
T Consensus 8 ~~~C~IC~~~~-----~~Pv~~--~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 8 YFRCPISLELM-----KDPVIV--STGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSCTTTSCCC-----SSEEEE--TTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cCCCCCccccc-----cCCEEc--CCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 45899998864 234443 699999999998888888899999999885
No 27
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.89 E-value=0.72 Score=38.73 Aligned_cols=53 Identities=21% Similarity=0.525 Sum_probs=37.4
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-+++..+.. ..++.- .|+--.|+.|.+--...++..||.|++++.+
T Consensus 3 ~~~C~IC~~~~~~~~~-~~~~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS-LKLMVN-VCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS-CCEEEC-TTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc-cCeecC-CCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3579999884333322 122332 6899999999976656677899999999965
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.95 E-value=0.52 Score=39.76 Aligned_cols=49 Identities=16% Similarity=0.449 Sum_probs=37.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
....|.||.+... ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 14 DKYKCEKCHLVLC-----SPKQ--TECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCEECTTTCCEES-----SCCC--CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred cCCCCCCCChHhc-----CeeE--CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3458999998752 2222 26888899999987776778899999999864
No 29
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=84.55 E-value=0.4 Score=39.69 Aligned_cols=53 Identities=26% Similarity=0.691 Sum_probs=38.8
Q ss_pred CccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-+...... +++..+.- .|+--.|+.|.+--.+. +..||.|++++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 3 MVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCBCTTTCCBHHHHHHTTCCEEEE-TTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCccChhhhCccccCCCEEeC-CCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 458999999865443 44444444 78999999999654444 6899999998854
No 30
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=83.88 E-value=0.77 Score=45.82 Aligned_cols=48 Identities=25% Similarity=0.701 Sum_probs=38.5
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
..|.||-+... ++ +.+..|+--.|+.|.+--.+.++..||.|++++..
T Consensus 55 ~~C~IC~~~~~-----~p-~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLK-----NT-MTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCS-----SE-EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhh-----Cc-CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 38999988753 23 33347999999999988888888999999999853
No 31
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.18 E-value=0.97 Score=38.53 Aligned_cols=49 Identities=27% Similarity=0.591 Sum_probs=36.9
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh--cCCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK--DGTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk--eG~~~CpqCkt~Ykr 90 (1085)
....|.||-+... ++.+. .|+--.|+.|.+--.+ .++..||.|++++..
T Consensus 19 ~~~~C~IC~~~~~-----~~~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCBCTTTCSBCS-----SEEEC--TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred cCCEeccCCcccC-----CeEEc--CCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3458999998753 33332 7899999999976655 366799999999864
No 32
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=82.74 E-value=1.5 Score=35.28 Aligned_cols=49 Identities=18% Similarity=0.460 Sum_probs=34.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
...|.||-+++.. |+..+....|+--.|+.|.+--. ..+..||-|++++
T Consensus 5 ~~~C~IC~~~~~~---~~~~~~~~~C~H~f~~~Ci~~w~-~~~~~CP~Cr~~~ 53 (55)
T 1iym_A 5 GVECAVCLAELED---GEEARFLPRCGHGFHAECVDMWL-GSHSTCPLCRLTV 53 (55)
T ss_dssp SCCCTTTCCCCCT---TSCCEECSSSCCEECTTHHHHTT-TTCCSCSSSCCCS
T ss_pred CCcCccCCccccC---CCceEECCCCCCcccHHHHHHHH-HcCCcCcCCCCEe
Confidence 4589999998633 34334443588889999995433 3468999999875
No 33
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.22 E-value=0.63 Score=41.69 Aligned_cols=62 Identities=24% Similarity=0.525 Sum_probs=45.7
Q ss_pred cccCCceEEEeecCCCCCCCCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh
Q 001399 10 GSHRRNELVRIRHDSDSGPKPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK 75 (1085)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk 75 (1085)
||.-.|||..++.-+- ..+-.+-+...|..|+...|+- ++--+.|..|...||+.|-.+.+.
T Consensus 1 ~~~~~~eL~elrrkga--k~~s~~~~~r~CarC~~~LG~l--~~~g~~C~~Ck~rVC~~Crv~~~~ 62 (76)
T 2csz_A 1 GSSGSSGLLEIKRKGA--KRGSQHYSDRTCARCQESLGRL--SPKTNTCRGCNHLVCRDCRIQESN 62 (76)
T ss_dssp CCCCCCCCCCCCCCCS--CSCCTTCCCCBCSSSCCBCSSS--CTTTSEETTTTEECCTTSEEECST
T ss_pred CchhHHHHHHHHHccc--cCcCcCCCccchhhhCcccccc--ccCCCcCcccChhhcccccccCCC
Confidence 4555899988875432 1233456677999999999886 334467999999999999877644
No 34
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=81.96 E-value=1.3 Score=35.49 Aligned_cols=50 Identities=26% Similarity=0.587 Sum_probs=35.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
....|.||-+++.. .++. +..-.|+--.|+.|.+--.+.. ..||-|++++
T Consensus 4 ~~~~C~IC~~~~~~--~~~~-~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~ 53 (55)
T 2ecm_A 4 GSSGCPICLEDIHT--SRVV-AHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPS 53 (55)
T ss_dssp CCCSCTTTCCCCCT--TTSC-EEECTTSCEEETTHHHHHHHHT-CCCTTSCCSS
T ss_pred CCCcCcccChhhcC--CCcC-eEecCCCCcccHHHHHHHHHcC-CcCCCCCCcC
Confidence 35689999998642 2222 3334688999999997655555 8999999875
No 35
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=81.26 E-value=1.1 Score=42.49 Aligned_cols=47 Identities=26% Similarity=0.591 Sum_probs=36.4
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
-.|.||-+..- ++.+. .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 53 ~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT--VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC--TTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCcCChHHc-----CcEEe--eCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 47999998753 33332 6899999999977666666799999999964
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=81.11 E-value=0.97 Score=48.02 Aligned_cols=49 Identities=8% Similarity=-0.038 Sum_probs=37.8
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
...-.|.||.+-. -++.+. .||.-.||.|-+--.+++...||.|+++..
T Consensus 206 ~~~~~c~i~~~~~-----~dPv~~--~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 206 PDYLCGKISFELM-----REPCIT--PSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CSTTBCTTTCSBC-----SSEEEC--SSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CcccCCcCcCCHh-----cCCeEC--CCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 3455899998753 345443 489999999998777777677999999884
No 37
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=80.92 E-value=1.6 Score=40.63 Aligned_cols=58 Identities=24% Similarity=0.519 Sum_probs=40.8
Q ss_pred CccccccCCccccCC-----------CCCeeeecCCCCCCcchhhhHhHhh----cCCCCCCCCcccccccCC
Q 001399 36 GQTCQICGDNVGLTA-----------MGDIFVACNECAFPVCRPCYEYERK----DGTQSCPQCKTRYKRHKG 93 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~-----------~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CpqCkt~Ykr~kg 93 (1085)
...|.||-+++...+ +-...+..-.|+=-.|+.|.+--.+ +.+..||-|++.|...+|
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~g 97 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG 97 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCCC
Confidence 458999998865432 1123444557888999999975554 456799999999976543
No 38
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=78.96 E-value=3.5 Score=36.17 Aligned_cols=53 Identities=21% Similarity=0.408 Sum_probs=37.4
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc--CCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD--GTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke--G~~~CpqCkt~Ykr 90 (1085)
....|.||-+....+ ....+.- .|+--.|+.|.+--.+. +...||.|+++++.
T Consensus 14 ~~~~C~IC~~~~~~~--~~~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 14 EVLECPICMESFTEE--QLRPKLL-HCGHTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp SCCBCTTTCCBCCTT--SSCEEEC-SSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred CCCCCccCCcccccc--CCCeEEC-CCCChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 345899999875332 2223333 68999999999765544 36899999999854
No 39
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=78.82 E-value=2.1 Score=35.93 Aligned_cols=49 Identities=20% Similarity=0.520 Sum_probs=34.5
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
...|.||-+... ++. ..-.|+--.|+.|.+--.+ .+..||-|+++....
T Consensus 5 ~~~C~IC~~~~~-----~~~-~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 5 AERCPICLEDPS-----NYS-MALPCLHAFCYVCITRWIR-QNPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCSSCCSCCC-----SCE-EETTTTEEESTTHHHHHHH-HSCSTTTTCCCCCCE
T ss_pred CCCCeeCCcccc-----CCc-EecCCCCeeHHHHHHHHHh-CcCcCcCCChhhHhh
Confidence 458999998853 211 2235788899999965443 347999999998643
No 40
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=76.80 E-value=1.7 Score=44.86 Aligned_cols=48 Identities=8% Similarity=-0.040 Sum_probs=36.9
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
..-.|.||++-. . ++.+. .||.-.||.|-+--.+.+...||.|++++.
T Consensus 105 ~~f~CPI~~elm-~----DPV~~--~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELM-R----EPCIT--PSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBC-S----SEEEC--TTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccC-C----CCeEC--CCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 345899998753 3 57666 499999999998776664457999999884
No 41
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=75.68 E-value=2.5 Score=36.60 Aligned_cols=48 Identities=29% Similarity=0.791 Sum_probs=35.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-----cCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-----DGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-----eG~~~CpqCkt~Ykr 90 (1085)
...|.||-+... ++. .. .|+-..|+.|.+--.+ .+...||.|++++..
T Consensus 19 ~~~C~IC~~~~~-----~p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 19 EVTCPICLELLT-----QPL-SL-DCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCTTTCSCCS-----SCB-CC-SSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCcccC-----Cce-eC-CCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 458999998862 122 22 6899999999975433 357899999999864
No 42
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.64 E-value=4.5 Score=34.01 Aligned_cols=53 Identities=17% Similarity=0.390 Sum_probs=36.7
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
.....|.||-+.+. +++..+.- .|+--.|+.|..--.+. +..||-|+++....
T Consensus 12 ~~~~~C~IC~~~~~---~~~~~~~~-~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILE---EGEDVRRL-PCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCC---SSSCEEEC-TTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCcccc---CCCcEEEe-CCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence 34568999998763 23333333 58888999999544433 46799999988653
No 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=74.41 E-value=3 Score=36.14 Aligned_cols=48 Identities=29% Similarity=0.739 Sum_probs=35.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc-----CCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD-----GTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~CpqCkt~Ykr 90 (1085)
...|.||-+.... + +.. .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 19 ~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 19 EVTCPICLELLKE-----P-VSA-DCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTSCTTTCSCCSS-----C-EEC-TTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred CCCCcCCChhhCc-----c-eeC-CCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 4589999887522 2 223 58889999999765444 47899999998853
No 44
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=74.29 E-value=2.4 Score=38.92 Aligned_cols=47 Identities=23% Similarity=0.628 Sum_probs=37.7
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
-.|.||-+..- + -+.|-.|+--.|+.|..--.+.....||.|++++.
T Consensus 23 ~~C~IC~~~~~-----~-p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 23 FRCFICMEKLR-----D-ARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp TBCTTTCSBCS-----S-EEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCccCCcccc-----C-ccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 47999999863 2 35566899999999997666666679999999985
No 45
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=73.77 E-value=0.69 Score=46.58 Aligned_cols=52 Identities=25% Similarity=0.513 Sum_probs=43.5
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
.+...|.+|+...|+- +..-+.|..|...||+.|-.|-++++.=.|--|-..
T Consensus 66 ~~~~~C~~C~~~fg~l--~~~g~~C~~C~~~VC~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 66 LNETHCARCLQPYRLL--LNSRRQCLECSLFVCKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGGTBCTTTCCBGGGC--SSCCEECTTTCCEECGGGEECCSSSSSCEEHHHHHH
T ss_pred CCCccchhhcCccccc--cCCCCcCCCCCchhhcccccccCCCCcEeeHHHHHH
Confidence 3577999999998876 344788999999999999999888888888877554
No 46
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=73.35 E-value=2.2 Score=39.58 Aligned_cols=47 Identities=6% Similarity=-0.101 Sum_probs=35.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
..-.|.||++-. -++.+.- ||.-.||.|-+--.+ ++..||.|+.++.
T Consensus 28 ~~~~CpI~~~~m-----~dPV~~~--cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLM-----TDPVRLP--SGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBC-----SSEEEET--TTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCcc-----cCCeECC--CCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 345899997642 2455443 899999999977665 5789999999884
No 47
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=73.32 E-value=1.5 Score=40.98 Aligned_cols=48 Identities=23% Similarity=0.705 Sum_probs=37.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.-.|.||-+..- ++.+. .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 15 ~~~C~iC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILV-----EPVTL--PCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCS-----SCEEC--TTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccC-----ceeEc--CCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 458999998752 23332 6899999999976666778899999999863
No 48
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=73.27 E-value=2.2 Score=38.21 Aligned_cols=47 Identities=6% Similarity=-0.089 Sum_probs=35.4
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
..-.|.||++-. . ++.+. .||.-.||.|-+--.+ ++..||.|++++.
T Consensus 13 ~~~~CpI~~~~m-~----dPV~~--~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLM-T----DPVRL--PSGTVMDRSIILRHLL-NSPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBC-S----SEEEC--TTSCEEEHHHHHHHHH-HCSBCTTTCCBCC
T ss_pred hheECcccCchh-c----CCeEC--CCCCEECHHHHHHHHh-cCCCCCCCcCCCC
Confidence 345899998643 2 35444 3899999999977766 4689999999884
No 49
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=72.84 E-value=7.5 Score=33.10 Aligned_cols=49 Identities=20% Similarity=0.470 Sum_probs=35.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
...|.||-+..-- +. ....|+--.|+.|.+--.+. +..||.|+++++..
T Consensus 15 ~~~C~IC~~~~~~-----p~-~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 15 YILCSICKGYLID-----AT-TITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQT 63 (72)
T ss_dssp GGSCTTTSSCCSS-----CE-ECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSS
T ss_pred CCCCCCCChHHHC-----cC-EECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCcc
Confidence 4589999876521 22 22367888899999766544 68999999999753
No 50
>2gvi_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.87A {Thermoplasma acidophilum} SCOP: d.81.3.1 g.39.1.18
Probab=69.82 E-value=1.3 Score=46.46 Aligned_cols=29 Identities=31% Similarity=0.639 Sum_probs=22.8
Q ss_pred CCCccccccCCccccC----CCCCeeeecCCCCCCcchhhhHh
Q 001399 34 LNGQTCQICGDNVGLT----AMGDIFVACNECAFPVCRPCYEY 72 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~----~~G~~fvaC~eC~fpvCr~Cyey 72 (1085)
.+.-+|++||+.|+-+ .||+ +||++|++.
T Consensus 170 ~~~~~C~~CGE~~~~~~~~~~~g~----------~~C~~C~~~ 202 (204)
T 2gvi_A 170 GAKVRCDVCGEYTYEADAKLLNGK----------PVCKPDYYG 202 (204)
T ss_dssp CCEEECTTTCCEEEGGGCEEETTE----------EECHHHHHC
T ss_pred CCceECCCCCCchhhcceeeeCCc----------EEChhhhcc
Confidence 4567999999998765 4565 789999964
No 51
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=68.86 E-value=2.8 Score=36.09 Aligned_cols=52 Identities=15% Similarity=0.408 Sum_probs=36.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
....|.||-+++.. ++..+.- .|+--.|+.|.+--.+. +..||-|+.++...
T Consensus 22 ~~~~C~IC~~~~~~---~~~~~~l-~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 22 EQTLCVVCMCDFES---RQLLRVL-PCNHEFHAKCVDKWLKA-NRTCPICRADSGPS 73 (75)
T ss_dssp SCCEETTTTEECCB---TCEEEEE-TTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred CCCCCeECCcccCC---CCeEEEE-CCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence 45689999988643 3433333 57888999999654443 57999999988654
No 52
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=68.09 E-value=4.2 Score=36.88 Aligned_cols=47 Identities=19% Similarity=0.475 Sum_probs=34.7
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
..|.||-+... ++.+. ..|+--.|+.|.+--.+ .+..||.|++++..
T Consensus 23 ~~C~IC~~~~~-----~p~~~-~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 23 LRCGICFEYFN-----IAMII-PQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp TBCTTTCSBCS-----SEEEC-TTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCcccCChhhC-----CcCEE-CCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 48999988752 23222 36899999999965544 45899999999864
No 53
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=67.98 E-value=3.3 Score=39.01 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=36.6
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
-.|.||.+..- ++ +.. .|+--.|+.|.+--.+.++..||.|+++...
T Consensus 19 ~~C~IC~~~~~-----~p-~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCcCChhhc-----Ce-EEC-CcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 48999997752 23 334 6999999999987777776799999988854
No 54
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=67.62 E-value=4 Score=40.44 Aligned_cols=47 Identities=28% Similarity=0.608 Sum_probs=36.3
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
..|.||-+..- ++.+ -.|+--.|+.|.+--.+.++..||.|++++..
T Consensus 79 ~~C~IC~~~~~-----~pv~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 79 FMCVCCQELVY-----QPVT--TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp TBCTTTSSBCS-----SEEE--CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CEeecCChhhc-----CCEE--cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 47999988652 2333 27898999999977777776799999999864
No 55
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=67.58 E-value=3.8 Score=37.86 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=34.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCC-CCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECA-FPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~-fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.-.|.||.+-. . ++.+. .|+ .-.||.|-+--.++ +..||.|++++.
T Consensus 22 ~~~CpI~~~~m-~----dPV~~--~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 22 EFLDPIMSTLM-C----DPVVL--PSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTBCTTTCSBC-S----SEEEC--TTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred hcCCcCccccc-c----CCeEC--CCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 45899997642 2 34443 478 99999999776665 689999999885
No 56
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.19 E-value=9.5 Score=33.17 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=34.9
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
....|.||-+..- ++.+ -.|+--.|+.|..--.+ .+..||.|++++.
T Consensus 14 ~~~~C~IC~~~~~-----~p~~--~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 14 IPFRCFICRQAFQ-----NPVV--TKCRHYFCESCALEHFR-ATPRCYICDQPTG 60 (81)
T ss_dssp CCSBCSSSCSBCC-----SEEE--CTTSCEEEHHHHHHHHH-HCSBCSSSCCBCC
T ss_pred CCCCCcCCCchhc-----CeeE--ccCCCHhHHHHHHHHHH-CCCcCCCcCcccc
Confidence 3458999988862 2333 26888899999966554 3689999999985
No 57
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=66.79 E-value=3.9 Score=36.84 Aligned_cols=50 Identities=22% Similarity=0.566 Sum_probs=36.0
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
....|.||-++.. +|+..+.. .|+--.|+.|..--. ..+..||-|+.+..
T Consensus 39 ~~~~C~IC~~~~~---~~~~~~~l-~C~H~Fh~~Ci~~wl-~~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYV---KGDVATEL-PCHHYFHKPCVSIWL-QKSGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECC---TTCEEEEE-TTTEEEEHHHHHHHH-TTTCBCTTTCCBSS
T ss_pred CCCCCcccChhhc---CCCcEEec-CCCChHHHHHHHHHH-HcCCcCcCcCccCC
Confidence 4558999998863 34554444 488889999985433 45679999998763
No 58
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.60 E-value=8.2 Score=32.85 Aligned_cols=52 Identities=19% Similarity=0.429 Sum_probs=36.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
....|.||-+.+.. ++..+.. .|+-..|+.|..--.+. +..||-|++++...
T Consensus 14 ~~~~C~IC~~~~~~---~~~~~~~-~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKP---RDELGIC-PCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCS---SSCEEEE-TTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCC---CCcEEEc-CCCCEecHHHHHHHHHc-CCcCCCcCcccccc
Confidence 35689999998632 3334433 58888999999654444 46899999988643
No 59
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.57 E-value=6.1 Score=33.60 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=34.9
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.....|.||-+... ++ +.. .|+--.|+.|.+--.+. +..||.|+.++..
T Consensus 13 ~~~~~C~IC~~~~~-----~~-~~~-~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV-----HP-VSL-PCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS-----SE-EEE-TTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC-----CC-EEc-cCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 45668999998752 12 223 47888999999643443 3899999999863
No 60
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=66.36 E-value=8 Score=33.24 Aligned_cols=50 Identities=24% Similarity=0.559 Sum_probs=35.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc-CCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD-GTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke-G~~~CpqCkt~Ykr 90 (1085)
....|.||-+..- ++.+ -..|+--.|+.|.+--.+. +...||.|++++.+
T Consensus 14 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 14 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp GGGSCSSSCCCCT-----TCEE-CSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCcCCChHHh-----CCeE-cCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 3458999987652 2322 3348999999999766554 45799999997654
No 61
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.32 E-value=5.1 Score=35.36 Aligned_cols=56 Identities=25% Similarity=0.469 Sum_probs=38.4
Q ss_pred CCCccccccCCccccC--------CCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLT--------AMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~--------~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.....|.||-+++.-. .+++..+.-..|+=--|+.|.+-=.+ .++.||-|++++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~-~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVK-QNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTT-TCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHH-hCCCCCCcCCCcch
Confidence 3456899999987542 23443333337899999999854433 35799999998854
No 62
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=64.28 E-value=3.7 Score=38.60 Aligned_cols=48 Identities=27% Similarity=0.722 Sum_probs=34.5
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
.|.+|+-.|-. -|. .++ |.=-.|-.|+..-.+++.+.||.|+.+..|.
T Consensus 3 fC~~C~~Pi~i--ygR-mIP---CkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV 50 (101)
T 3vk6_A 3 FCDKCGLPIKV--YGR-MIP---CKHVFCYDCAILHEKKGDKMCPGCSDPVQRI 50 (101)
T ss_dssp BCTTTCSBCSE--EEE-EET---TCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred ecCccCCCeEE--Eee-ecc---ccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence 56677666432 122 233 3446799999888889999999999999776
No 63
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=62.16 E-value=6 Score=36.87 Aligned_cols=48 Identities=27% Similarity=0.502 Sum_probs=37.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.-.|.||-+..- ++.+ . .|+--.|+.|.+--.+.++..||.|+.++..
T Consensus 23 ~~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 23 SISCQICEHILA-----DPVE-T-SCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HTBCTTTCSBCS-----SEEE-C-TTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCcHhc-----CcEE-c-CCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 448999988752 2333 3 7899999999977777767899999999864
No 64
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.03 E-value=5.7 Score=33.46 Aligned_cols=48 Identities=25% Similarity=0.706 Sum_probs=35.0
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
....|.||-+.... ...+ |+--.|+.|.+- .-..+..||.|+++....
T Consensus 14 ~~~~C~IC~~~~~~-----~~~~---CgH~fc~~Ci~~-~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 14 DEEECCICMDGRAD-----LILP---CAHSFCQKCIDK-WSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCSSSCCSCCS-----EEET---TTEEECHHHHHH-SSCCCSSCHHHHHCTTCC
T ss_pred CCCCCeeCCcCccC-----cccC---CCCcccHHHHHH-HHHCcCcCCCcCCcccCC
Confidence 35589999887522 4444 677789999954 334789999999988643
No 65
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=61.76 E-value=5.7 Score=36.62 Aligned_cols=48 Identities=23% Similarity=0.593 Sum_probs=35.3
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.-.|.||.+..- ++.+ ...|+--.|+.|.+--.+. +..||.|++.+..
T Consensus 15 ~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATT-IIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GTBCTTTSSBCS-----SEEE-ETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred cCCCccCChHHh-----CcCE-eCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 348999988752 2333 2368999999999655554 4899999999864
No 66
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.66 E-value=5 Score=35.11 Aligned_cols=53 Identities=21% Similarity=0.510 Sum_probs=37.2
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh---hcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER---KDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---keG~~~CpqCkt~Ykr~ 91 (1085)
+...|.+|+.. .+|+..+.|..|.--.=-.|..... .+|.-.||.|...-++.
T Consensus 17 ~~~~C~~C~~~----~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 17 QIWICPGCNKP----DDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EEECBTTTTBC----CSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CCcCCCCCCCC----CCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 45689999876 3688899999885443345654332 34788999998876543
No 67
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.52 E-value=5.7 Score=37.29 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=33.6
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.-.|.||-+.. -++.+.. .|+--.|+.|..--.+ ..||.|++++.
T Consensus 22 ~~~C~IC~~~~-----~~pv~~~-~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNIL-----REPVCLG-GCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCC-----SSCBCCC-SSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHh-----hCccEeC-CCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 34899998775 2344433 6899999999965544 78999999984
No 68
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=60.98 E-value=6.4 Score=36.15 Aligned_cols=47 Identities=23% Similarity=0.608 Sum_probs=34.0
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh--cCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK--DGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk--eG~~~CpqCkt~Ykr 90 (1085)
..|.||-+..- ++.+ . .|+--.|+.|.+--.+ .+...||.|++++..
T Consensus 22 ~~C~IC~~~~~-----~p~~-~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 22 LECPICLELIK-----EPVS-T-KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp TSCSSSCCCCS-----SCCB-C-TTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCcccChhhc-----CeEE-C-CCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 47999988652 2222 2 6899999999975544 344689999998864
No 69
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=60.93 E-value=5.5 Score=38.55 Aligned_cols=45 Identities=27% Similarity=0.627 Sum_probs=32.5
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.|.||-+..- ++ |.. .|+--.|+.|..--. +.+..||.|+++.+.
T Consensus 55 ~C~iC~~~~~-----~~-~~~-~CgH~fc~~Ci~~~~-~~~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 55 QCIICSEYFI-----EA-VTL-NCAHSFCSYCINEWM-KRKIECPICRKDIKS 99 (138)
T ss_dssp BCTTTCSBCS-----SE-EEE-TTSCEEEHHHHHHHT-TTCSBCTTTCCBCCC
T ss_pred CCcccCcccC-----Cc-eEC-CCCCCccHHHHHHHH-HcCCcCCCCCCcCCC
Confidence 6999988752 23 223 588899999986433 345789999998853
No 70
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=60.61 E-value=3.7 Score=35.30 Aligned_cols=48 Identities=31% Similarity=0.784 Sum_probs=34.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc------CCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD------GTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke------G~~~CpqCkt~Ykr 90 (1085)
...|.||-+..- ++.+ . .|+--.|+.|.+--.+. +...||.|++++..
T Consensus 12 ~~~C~IC~~~~~-----~p~~-l-~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 12 EVTCPICLELLT-----EPLS-L-DCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCEETTTTEECS-----SCCC-C-SSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred CCCCcCCCcccC-----CeeE-C-CCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 458999998752 1222 3 68999999999754333 37899999999853
No 71
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.60 E-value=4.5 Score=35.84 Aligned_cols=47 Identities=23% Similarity=0.712 Sum_probs=34.2
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt~Yk 89 (1085)
..|.||-+.|.. | ..|..|+-..=..|..-= +..++..||.|++...
T Consensus 16 ~~C~IC~~~i~~---g---~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 16 KICNICHSLLIQ---G---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp CBCSSSCCBCSS---S---EECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CcCcchhhHccc---C---CccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 489999999863 3 367777776667787422 4455689999998874
No 72
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.58 E-value=7.9 Score=31.93 Aligned_cols=43 Identities=26% Similarity=0.622 Sum_probs=31.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc--CCCCCCCC
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD--GTQSCPQC 84 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke--G~~~CpqC 84 (1085)
....|.||-+..- ++.+. .|+--.|+.|.+--.+. ++..||.|
T Consensus 19 ~~~~C~IC~~~~~-----~p~~~--~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ-----KPVTI--DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS-----SCEEC--TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC-----CeEEe--CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 3458999998753 23332 78999999999766654 66789988
No 73
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=58.64 E-value=6 Score=39.45 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=37.7
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
-.|.||.+..- ++ |.+ .|+--.|+.|.+--.+.++..||.|++++..
T Consensus 19 ~~C~IC~~~~~-----~p-v~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 19 YECPICLMALR-----EA-VQT-PCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp GBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCChhhc-----Cc-EEC-CCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 48999998752 23 446 7999999999988777777799999988754
No 74
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=57.07 E-value=11 Score=33.42 Aligned_cols=49 Identities=24% Similarity=0.556 Sum_probs=35.0
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh-cCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK-DGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk-eG~~~CpqCkt~Yk 89 (1085)
..-.|.||.+..- ++.+ ...|+--.|+.|.+--.+ .+...||.|++++.
T Consensus 12 ~~~~C~IC~~~~~-----~p~~-~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMT-----DAVV-IPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECS-----SCEE-CTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhc-----CceE-CCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3458999997642 2322 324899999999975544 45579999999873
No 75
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=54.87 E-value=6.4 Score=38.73 Aligned_cols=37 Identities=27% Similarity=0.726 Sum_probs=30.2
Q ss_pred CCCccccccCCccccC-CCCCeeeecCCCCCCcchhhhHhH
Q 001399 34 LNGQTCQICGDNVGLT-AMGDIFVACNECAFPVCRPCYEYE 73 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~-~~G~~fvaC~eC~fpvCr~Cyeye 73 (1085)
.+...|.+|+...|+- ..| +.|..|...||+.|-.+-
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g---~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSAS---VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCE---EECTTTCCEEETTSEEEC
T ss_pred CCCccccccCCCcccccCCC---CCCCCCCcccccccCCcc
Confidence 4567999999999754 334 889999999999998764
No 76
>3d00_A Tungsten formylmethanofuran dehydrogenase subunit; FWDE/GAPDH domain-like fold, structural genomics, joint CENT structural genomics; HET: MSE; 1.90A {Syntrophus aciditrophicus}
Probab=54.86 E-value=3.8 Score=42.60 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=21.7
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhH
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE 71 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye 71 (1085)
.+.-+|++||+.|+-. +=++|++|++
T Consensus 161 ~~~~~C~~CGE~~~~~------------g~~~C~~C~~ 186 (191)
T 3d00_A 161 GKIVLCPQCREAYPAQ------------DGELCLSCQG 186 (191)
T ss_dssp CCEEECTTTCCEEEGG------------GCSSCHHHHT
T ss_pred cCCEECCcCCCChhhC------------CCcCCccccC
Confidence 5777999999998765 5589999985
No 77
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=54.73 E-value=10 Score=35.52 Aligned_cols=54 Identities=20% Similarity=0.338 Sum_probs=36.0
Q ss_pred CCccccccCCccccC----------CCCC-eeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 35 NGQTCQICGDNVGLT----------AMGD-IFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~----------~~G~-~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
....|.||-+.+... ..|+ .-+.--.|+---++.|..-= -..+..||-|+.+++
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~W-l~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRW-LKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHH-HTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHH-HHcCCcCcCCCCcce
Confidence 456899998886643 1122 12222378999999998443 345789999999964
No 78
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=53.27 E-value=5.8 Score=34.09 Aligned_cols=58 Identities=26% Similarity=0.618 Sum_probs=39.9
Q ss_pred CCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCcccccccCCCCC
Q 001399 31 LKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKTRYKRHKGSPR 96 (1085)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt~Ykr~kgspr 96 (1085)
++..+...|.+|++. | ..+.|..|.-..=..|+.- +.-+|.=.||.|...- ..++.+|
T Consensus 3 ~~~~~~~~C~vC~~~------g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~-~~~~~~~ 63 (66)
T 1xwh_A 3 MAQKNEDECAVCRDG------G-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQAT-VQEVQPR 63 (66)
T ss_dssp CCCSCCCSBSSSSCC------S-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTC-CCCCCCC
T ss_pred cCCCCCCCCccCCCC------C-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcc-cccCccc
Confidence 445677799999973 3 5789999976666678762 2446888999997542 2334444
No 79
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=52.77 E-value=7.8 Score=35.32 Aligned_cols=58 Identities=21% Similarity=0.500 Sum_probs=43.1
Q ss_pred CCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCcccc
Q 001399 29 KPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKTRY 88 (1085)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt~Y 88 (1085)
++...-+...|.+|++. -..+++..+-|..|.-.+=..||.-. .-+|.=.||.|...-
T Consensus 18 ~~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 18 SQSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp TTCCCCCCCCCSSCCSS--SSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCcCCCCCcCCcCCCC--CCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 33344567899999974 22456789999999888888999653 457899999997643
No 80
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=52.02 E-value=6 Score=49.12 Aligned_cols=58 Identities=22% Similarity=0.572 Sum_probs=42.3
Q ss_pred CCCccccccCCccccCCC---CCeeeecCCCC--------------------CCcchhhhH-hH----hh--cCCCCCCC
Q 001399 34 LNGQTCQICGDNVGLTAM---GDIFVACNECA--------------------FPVCRPCYE-YE----RK--DGTQSCPQ 83 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------fpvCr~Cye-ye----rk--eG~~~Cpq 83 (1085)
..-.+|.-|=.++---.| .-+|+.|..|| ||.|..|.. |+ |+ ----+||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 455689999988743222 55899999998 999999973 44 33 12258999
Q ss_pred Cccccccc
Q 001399 84 CKTRYKRH 91 (1085)
Q Consensus 84 Ckt~Ykr~ 91 (1085)
|+=++.-.
T Consensus 189 CGP~l~l~ 196 (761)
T 3vth_A 189 CGPSLSFV 196 (761)
T ss_dssp TSCCEEEE
T ss_pred cCCeeEEe
Confidence 99988543
No 81
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=51.66 E-value=6.3 Score=36.90 Aligned_cols=55 Identities=25% Similarity=0.686 Sum_probs=39.9
Q ss_pred CCccccccCCccccCC-CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTA-MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~-~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
+.-.|.||-+...... +|+..+.- .|+--.|+.|.+--.+. +..||.|+..+...
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINHK 61 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTT
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHh-CCCCCCCCCcCccc
Confidence 3458999999864432 45544544 88999999999655544 46999999998643
No 82
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=51.62 E-value=4.7 Score=37.79 Aligned_cols=54 Identities=26% Similarity=0.693 Sum_probs=40.2
Q ss_pred CCccccccCCccccC-CCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLT-AMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~-~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
+...|.||-+.+... +.+...+.+ .|+-..|..|.+--.+. +..||.|++.+..
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 455899999886543 345555655 89999999999655544 4799999999853
No 83
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=50.97 E-value=9.2 Score=43.87 Aligned_cols=48 Identities=27% Similarity=0.610 Sum_probs=33.8
Q ss_pred ccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
..|.||-+..- + -... .|+=-.|+.|..--.+.++..||-|+++....
T Consensus 333 ~~C~ICle~~~---~-pv~l---pCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 333 QLCKICAENDK---D-VKIE---PCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380 (389)
T ss_dssp SBCTTTSSSBC---C-EEEE---TTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred CCCCccCcCCC---C-eEEe---CCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence 58999977751 1 1233 56666699999654554788999999988653
No 84
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=50.09 E-value=11 Score=40.40 Aligned_cols=49 Identities=20% Similarity=0.613 Sum_probs=39.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt~Ykr 90 (1085)
-..|++|-+-|..+ +.|..|+-..=+.|++-- +..++..||.|++....
T Consensus 180 i~~C~iC~~iv~~g------~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQG------QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSC------EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCC------cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 45899999998742 889889999999999654 44566799999998743
No 85
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.50 E-value=20 Score=30.71 Aligned_cols=45 Identities=24% Similarity=0.781 Sum_probs=32.1
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
.+...|.||-+.. .--+|++| +=- .|..|.+. .+.||-|+++...
T Consensus 13 ~~~~~C~IC~~~~----~~~v~~pC---gH~~~C~~C~~~-----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT----VNWVLLPC---RHTCLCDGCVKY-----FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC----CCCEETTT---TBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC----CCEEEECC---CChhhhHHHHhc-----CCCCCCCCcchhc
Confidence 3566899998763 22346666 444 89999972 4899999998864
No 86
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=49.38 E-value=6.7 Score=34.46 Aligned_cols=56 Identities=21% Similarity=0.528 Sum_probs=42.6
Q ss_pred CCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH-hhcCCCCCCCCccc
Q 001399 30 PLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE-RKDGTQSCPQCKTR 87 (1085)
Q Consensus 30 ~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye-rkeG~~~CpqCkt~ 87 (1085)
+....+...|.||++. -..+++..+.|..|.-.+=..||.-. .-+|.=.||.|...
T Consensus 10 ~~~~~~~~~C~vC~~~--~s~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 10 QSLIDEDAVCSICMDG--ESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CCCCCSSCSCSSSCCC--CCCSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCCCCCCCCCC--CCCCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 4445667799999874 23456778999999888888999754 44788999999753
No 87
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=49.38 E-value=18 Score=29.41 Aligned_cols=45 Identities=22% Similarity=0.581 Sum_probs=32.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~ 91 (1085)
...|.||-+..-. . ... .|+--.|+.|.+- .+..||.|+++....
T Consensus 6 ~~~C~IC~~~~~~-p---~~l---~CgH~fC~~Ci~~----~~~~CP~Cr~~~~~~ 50 (56)
T 1bor_A 6 FLRCQQCQAEAKC-P---KLL---PCLHTLCSGCLEA----SGMQCPICQAPWPLG 50 (56)
T ss_dssp CSSCSSSCSSCBC-C---SCS---TTSCCSBTTTCSS----SSSSCSSCCSSSSCC
T ss_pred CCCceEeCCccCC-e---EEc---CCCCcccHHHHcc----CCCCCCcCCcEeecC
Confidence 3479999887531 1 122 4777889999844 678999999988654
No 88
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=47.71 E-value=1.9 Score=38.07 Aligned_cols=43 Identities=21% Similarity=0.559 Sum_probs=32.7
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCC
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDE 102 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~e 102 (1085)
..+| |+|+.=.+|++.+|.-.|+.|+..|--..|-|..--||.
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ea 50 (70)
T 2js4_A 8 ILVC-----PVCKGRLEFQRAQAELVCNADRLAFPVRDGVPIMLEAEA 50 (70)
T ss_dssp CCBC-----TTTCCBEEEETTTTEEEETTTTEEEEEETTEECCCGGGS
T ss_pred heEC-----CCCCCcCEEeCCCCEEEcCCCCceecCCCCeeeeChhhc
Confidence 4667 555555667777888999999999998888887766643
No 89
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=47.22 E-value=12 Score=32.44 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=23.3
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPV 65 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpv 65 (1085)
.-.-+|.-||.++.+... .-+-|.+|++.|
T Consensus 19 ~v~Y~C~~Cg~~~~l~~~--~~iRC~~CG~RI 48 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQAK--EVIRCRECGHRV 48 (63)
T ss_dssp CCCCBCSSSCCBCCCCSS--SCCCCSSSCCCC
T ss_pred CeEEECCCCCCeeecCCC--CceECCCCCcEE
Confidence 345699999999988753 348899999876
No 90
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=47.05 E-value=6 Score=38.84 Aligned_cols=46 Identities=20% Similarity=0.492 Sum_probs=36.7
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
.-.|.||.+-+- ++ |.. .|+--.|+.|.+--.+.++..||.|+++.
T Consensus 31 ~~~C~IC~~~~~-----~p-v~~-~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 31 KYLCSACRNVLR-----RP-FQA-QCGHRYCSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp GGBCTTTCSBCS-----SE-EEC-TTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCCCCCChhhc-----Cc-EEC-CCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence 348999998652 33 334 89999999999887888888999999865
No 91
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=46.81 E-value=2.7 Score=36.86 Aligned_cols=45 Identities=13% Similarity=0.481 Sum_probs=34.4
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcC
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEED 104 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~ 104 (1085)
..+| |+|+-=.+|++.+|.-.|+.|+..|--..|-|..--||...
T Consensus 8 iL~C-----P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear~ 52 (68)
T 2hf1_A 8 ILVC-----PLCKGPLVFDKSKDELICKGDRLAFPIKDGIPMMLESEARE 52 (68)
T ss_dssp ECBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCGGGCEE
T ss_pred heEC-----CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhccC
Confidence 5677 55555556777788899999999999999999877775443
No 92
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=44.62 E-value=10 Score=32.02 Aligned_cols=50 Identities=18% Similarity=0.420 Sum_probs=33.5
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
.....|.||-|+..- -.|+.- .|+-- .|..|.+--. +.+..||-|+.+.+
T Consensus 6 ~~~~~C~IC~~~~~~----~~~~~~-pCgH~~~C~~C~~~~~-~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 6 NAIEPCVICQGRPKN----GCIVHG-KTGHLMACFTCAKKLK-KRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGGSCCTTTSSSCSC----EEEEET-TEEEEEECHHHHHHHH-HTTCCCTTTCCCCC
T ss_pred CCcCCCCcCCCCCCC----EEEECC-CCCChhhHHHHHHHHH-HcCCcCCCcCcchh
Confidence 355689999886321 145510 34655 6999997554 45678999999875
No 93
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=44.17 E-value=21 Score=30.21 Aligned_cols=47 Identities=21% Similarity=0.665 Sum_probs=36.3
Q ss_pred CCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCcc
Q 001399 33 NLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKT 86 (1085)
Q Consensus 33 ~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt 86 (1085)
..+...|.+|++. ...+.|..|.-..=-.|..- +.-+|.=.||.|..
T Consensus 8 ~~~~~~C~vC~~~-------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 8 TDHQDYCEVCQQG-------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp SCCCSSCTTTSCC-------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCCccCCCC-------CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 4456799999973 35788999987777788875 34578999999974
No 94
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.02 E-value=38 Score=26.94 Aligned_cols=43 Identities=26% Similarity=0.638 Sum_probs=30.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc--CCCCCCCC
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD--GTQSCPQC 84 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke--G~~~CpqC 84 (1085)
....|.||-+.... + +.- .|+--.|+.|.+--.++ ++..||.|
T Consensus 14 ~~~~C~IC~~~~~~-----p-~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE-----P-VII-ECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS-----C-CCC-SSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc-----c-EeC-CCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 34589999988632 2 122 57888999999765443 77899988
No 95
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=42.89 E-value=11 Score=44.97 Aligned_cols=36 Identities=19% Similarity=0.499 Sum_probs=30.5
Q ss_pred CCCccccccCCcc-ccCCCCCeeeecCCCCCCcchhhhHh
Q 001399 34 LNGQTCQICGDNV-GLTAMGDIFVACNECAFPVCRPCYEY 72 (1085)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~G~~fvaC~eC~fpvCr~Cyey 72 (1085)
.....|..|++-+ |+.-.| ..|..|+|.||+-|.+.
T Consensus 527 ~~~t~C~~C~~~l~gl~~qg---~~C~~C~~~vHk~C~~~ 563 (587)
T 3ky9_A 527 EETTSCKACQMLLRGTFYQG---YRCHRCRASAHKECLGR 563 (587)
T ss_dssp SSCCBCTTTCSBCCSSSCCE---EEETTTCCEECSGGGGG
T ss_pred CCCcccccccccccccccCC---cCCCCCCCccchhhhhc
Confidence 3456999999997 776666 78999999999999965
No 96
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A
Probab=42.76 E-value=12 Score=42.30 Aligned_cols=35 Identities=23% Similarity=0.574 Sum_probs=29.1
Q ss_pred CCCccccccCCcc-ccCCCCCeeeecCCCCCCcchhhhH
Q 001399 34 LNGQTCQICGDNV-GLTAMGDIFVACNECAFPVCRPCYE 71 (1085)
Q Consensus 34 ~~~~~C~iCgd~v-g~~~~G~~fvaC~eC~fpvCr~Cye 71 (1085)
.....|..|+.-+ |+...| ..|..|++.||+.|..
T Consensus 355 ~~~t~C~~C~~~~~g~~~qg---~~C~~C~~~~h~~C~~ 390 (406)
T 2vrw_B 355 EETTSCKACQMLLRGTFYQG---YRCYRCRAPAHKECLG 390 (406)
T ss_dssp SSCCBCTTTCCBCCSSSSCE---EEETTTCCEECGGGGG
T ss_pred CCCCCCccccchhceeCCCC---CCCCCCcCccchhhhh
Confidence 4556999999997 676655 5699999999999995
No 97
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=42.60 E-value=5.2 Score=38.20 Aligned_cols=31 Identities=13% Similarity=0.501 Sum_probs=21.1
Q ss_pred eeeecCCCCCCcchhhhHhHhhcCCC-CCCCCccccccc
Q 001399 54 IFVACNECAFPVCRPCYEYERKDGTQ-SCPQCKTRYKRH 91 (1085)
Q Consensus 54 ~fvaC~eC~fpvCr~CyeyerkeG~~-~CpqCkt~Ykr~ 91 (1085)
...-|.+|++ +++..+-.. .||.|+.+-.+.
T Consensus 72 ~~~~C~~CG~-------~~e~~~~~~~~CP~Cgs~~~~i 103 (119)
T 2kdx_A 72 VELECKDCSH-------VFKPNALDYGVCEKCHSKNVII 103 (119)
T ss_dssp CEEECSSSSC-------EECSCCSTTCCCSSSSSCCCEE
T ss_pred ceEEcCCCCC-------EEeCCCCCCCcCccccCCCcEE
Confidence 3566777774 344455566 899999986654
No 98
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.57 E-value=14 Score=31.86 Aligned_cols=43 Identities=33% Similarity=0.739 Sum_probs=30.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-+..- --.+.+ |+-- .|+.|.+ ....||-|+++...
T Consensus 25 ~~~C~IC~~~~~----~~~~~p---CgH~~~C~~C~~-----~~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVP---CGHLVTCKQCAE-----AVDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSS---SCCCCBCHHHHH-----HCSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCC----CEEEec---CCCHHHHHHHhh-----CCCCCccCCceecC
Confidence 347999987631 123444 5777 8999984 24889999998864
No 99
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=39.61 E-value=4.1 Score=35.70 Aligned_cols=41 Identities=22% Similarity=0.331 Sum_probs=29.9
Q ss_pred CcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCcC
Q 001399 64 PVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEED 104 (1085)
Q Consensus 64 pvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~ 104 (1085)
|+|+-=.+|++.+|.-.|+.|+..|--..|-|..--||...
T Consensus 12 P~ck~~L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~Ear~ 52 (68)
T 2jr6_A 12 PVTKGRLEYHQDKQELWSRQAKLAYPIKDGIPYMLENEARP 52 (68)
T ss_dssp SSSCCBCEEETTTTEEEETTTTEEEEEETTEECCCTTTCEE
T ss_pred CCCCCcCeEeCCCCEEEcCCCCcEecCCCCeeeeChhhccC
Confidence 33333344555678889999999999999999887775443
No 100
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=38.44 E-value=28 Score=32.71 Aligned_cols=52 Identities=19% Similarity=0.442 Sum_probs=39.8
Q ss_pred CccccccCCccc--cCCCCCeeeecCCCCCCcchhhhHh------HhhcCCCCCCCCccc
Q 001399 36 GQTCQICGDNVG--LTAMGDIFVACNECAFPVCRPCYEY------ERKDGTQSCPQCKTR 87 (1085)
Q Consensus 36 ~~~C~iCgd~vg--~~~~G~~fvaC~eC~fpvCr~Cyey------erkeG~~~CpqCkt~ 87 (1085)
..+|.+|...=. .+.+++.++.|..|+-..=..|.++ ..++++=.||.||+=
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C 64 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECKTC 64 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTCCB
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCCcc
Confidence 458999976533 3356778999999988887888864 356889999999853
No 101
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.40 E-value=31 Score=30.26 Aligned_cols=62 Identities=23% Similarity=0.543 Sum_probs=34.4
Q ss_pred CCCCCCccccccCCcccc----CCCCCee----eecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCC
Q 001399 31 LKNLNGQTCQICGDNVGL----TAMGDIF----VACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSP 95 (1085)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsp 95 (1085)
.+......|..|+..|.. .+.|..+ ..|.+|.-++=.-.|-.-.++|.- =|+.-|.+...+|
T Consensus 10 ~~~~~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF~C~~C~~~L~~~~~~~~~~~g~~---yC~~~y~~~~~~~ 79 (82)
T 2co8_A 10 QEAGAGDLCALCGEHLYVLERLCVNGHFFHRSCFRCHTCEATLWPGGYEQHPGDGHF---YCLQHLPQTDSGP 79 (82)
T ss_dssp CCCCSSCBCSSSCCBCCTTTBCCBTTBCCBTTTCBCSSSCCBCCTTSEECCTTTCCC---EETTTCCCCCCCC
T ss_pred cCCCCCCCCcccCCCcccceEEEECCCeeCCCcCEEcCCCCCcCCCceeEeCcCCEE---EChHHHHhhhcCC
Confidence 344566799999999853 3456554 235555544433333110245553 4556677666554
No 102
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.67 E-value=41 Score=30.02 Aligned_cols=39 Identities=18% Similarity=0.502 Sum_probs=26.3
Q ss_pred CCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh
Q 001399 31 LKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY 72 (1085)
Q Consensus 31 ~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey 72 (1085)
+.+.....|.+|+..-++..+ ---|..|+--+|..|-.+
T Consensus 9 ~pd~~~~~C~~C~~~F~~~~R---rHHCR~CG~vfC~~Cs~~ 47 (84)
T 1x4u_A 9 YPTNNFGNCTGCSATFSVLKK---RRSCSNCGNSFCSRCCSF 47 (84)
T ss_dssp CSCCCCSSCSSSCCCCCSSSC---CEECSSSCCEECTTTSCE
T ss_pred ccCCCCCcCcCcCCccccchh---hhhhcCCCcEEChhhcCC
Confidence 455666799999999766532 245667777777776554
No 103
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.44 E-value=75 Score=28.14 Aligned_cols=35 Identities=23% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCCCCCCCccccccCCcccc----CCCCCee----eecCCCC
Q 001399 28 PKPLKNLNGQTCQICGDNVGL----TAMGDIF----VACNECA 62 (1085)
Q Consensus 28 ~~~~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~ 62 (1085)
+++.+......|..|+..|.- .+.|..+ ..|.+|.
T Consensus 7 ~~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~~H~~CF~C~~C~ 49 (91)
T 2d8y_A 7 GMKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCN 49 (91)
T ss_dssp SSCSCSSSSCBCTTTCCBCCTTSEEECSSSEEETTTCBCTTTC
T ss_pred CCccCCCCCCcCccCCCccCCceeEEECCCEECCCCCeeCCCC
Confidence 355555677899999998853 3456554 2355663
No 104
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=37.15 E-value=4.6 Score=35.35 Aligned_cols=44 Identities=18% Similarity=0.289 Sum_probs=32.5
Q ss_pred eeecCCCCCCcchhhhHhHhhcCCCCCCCCcccccccCCCCCccCCCCc
Q 001399 55 FVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEE 103 (1085)
Q Consensus 55 fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee 103 (1085)
..+| |+|+.=.+|...+|.-.|+.|+..|--..|-|..--||..
T Consensus 10 iL~C-----P~ck~~L~~~~~~g~LvC~~c~~~YPI~dGIPvmL~~Ear 53 (67)
T 2jny_A 10 VLAC-----PKDKGPLRYLESEQLLVNERLNLAYRIDDGIPVLLIDEAT 53 (67)
T ss_dssp CCBC-----TTTCCBCEEETTTTEEEETTTTEEEEEETTEECCCSSCCE
T ss_pred HhCC-----CCCCCcCeEeCCCCEEEcCCCCccccCCCCEeeeChhHhc
Confidence 4566 4444444555667888999999999999999987777543
No 105
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.79 E-value=30 Score=32.65 Aligned_cols=24 Identities=17% Similarity=0.041 Sum_probs=16.4
Q ss_pred CcchhhhHhHhhcCC-CCCCCCccccc
Q 001399 64 PVCRPCYEYERKDGT-QSCPQCKTRYK 89 (1085)
Q Consensus 64 pvCr~CyeyerkeG~-~~CpqCkt~Yk 89 (1085)
|.|+.||.- +-+. ..|-.|+.+-.
T Consensus 56 ~yC~~cy~~--~f~~~~~C~~C~~~I~ 80 (122)
T 1m3v_A 56 ILCRNDYIR--LFGNSGAGGSGGHMGS 80 (122)
T ss_dssp EECHHHHHH--HHCCCCSSSCSSCCSC
T ss_pred eecHHHHHH--HcCCCCccccCCCCcC
Confidence 459999843 3443 37999988764
No 106
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=35.54 E-value=9.8 Score=47.34 Aligned_cols=57 Identities=30% Similarity=0.703 Sum_probs=41.5
Q ss_pred CCCccccccCCccccCCC---CCeeeecCCCC--------------------CCcchhhh-HhH----hh--cCCCCCCC
Q 001399 34 LNGQTCQICGDNVGLTAM---GDIFVACNECA--------------------FPVCRPCY-EYE----RK--DGTQSCPQ 83 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------fpvCr~Cy-eye----rk--eG~~~Cpq 83 (1085)
..-.+|.-|=.++---.| +-+|+-|..|| ||.|..|. ||+ |+ ----+||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 456689999988733222 56899999994 99999996 455 33 12249999
Q ss_pred Ccccccc
Q 001399 84 CKTRYKR 90 (1085)
Q Consensus 84 Ckt~Ykr 90 (1085)
|+=++.-
T Consensus 184 CGP~l~l 190 (772)
T 4g9i_A 184 CGPSYRL 190 (772)
T ss_dssp TSCCEEE
T ss_pred CCceEEE
Confidence 9988754
No 107
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=35.47 E-value=8.1 Score=38.06 Aligned_cols=13 Identities=23% Similarity=0.634 Sum_probs=10.0
Q ss_pred CCCCCCCcccccc
Q 001399 78 TQSCPQCKTRYKR 90 (1085)
Q Consensus 78 ~~~CpqCkt~Ykr 90 (1085)
...||.|+.+--.
T Consensus 107 ~~~CP~Cgs~~~~ 119 (139)
T 3a43_A 107 FLACPKCGSHDFE 119 (139)
T ss_dssp GCSCSSSSCCCEE
T ss_pred CCcCccccCCccE
Confidence 5789999987543
No 108
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=35.37 E-value=20 Score=32.14 Aligned_cols=49 Identities=22% Similarity=0.569 Sum_probs=34.6
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH----hhcCC---CCCCC--Ccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE----RKDGT---QSCPQ--CKTRY 88 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye----rkeG~---~~Cpq--Ckt~Y 88 (1085)
...|.||-|++. +..++.-..|+=--|+.|..-- .++|. -.||+ |+..+
T Consensus 5 ~~~C~IC~~~~~----~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 5 SSGCKLCLGEYP----VEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp BCCCSSSCCCCB----GGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CcCCcccCcccc----cccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 458999998753 3345544468999999997544 23664 48999 99874
No 109
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=34.73 E-value=16 Score=30.29 Aligned_cols=32 Identities=28% Similarity=0.725 Sum_probs=26.3
Q ss_pred CccccccCCccccCCCCCeeeecCCC-CCCcchhhhHhH
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNEC-AFPVCRPCYEYE 73 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC-~fpvCr~Cyeye 73 (1085)
+-.|..|+.+|| .-.-|.+| .|-+|..||.-.
T Consensus 6 ~~~Cd~C~~~ig------~R~~C~~C~dyDLC~~C~~~~ 38 (52)
T 1tot_A 6 VYTCNECKHHVE------TRWHCTVCEDYDLCINCYNTK 38 (52)
T ss_dssp CEEETTTTEEES------SEEEESSSSSCEECHHHHHHH
T ss_pred EEECCCCCCCCc------ceEEcCCCCCchhHHHHHhCC
Confidence 458999999863 46899999 899999999653
No 110
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=34.46 E-value=29 Score=29.27 Aligned_cols=47 Identities=26% Similarity=0.685 Sum_probs=35.4
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKTR 87 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt~ 87 (1085)
.+...|.+|++ |...+.|..|.-..=..|+.- +.-+|.=.||.|..+
T Consensus 7 ~~~~~C~vC~~-------~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 7 HHMEFCRVCKD-------GGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SSCSSCTTTCC-------CSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCCcCCCCCC-------CCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 35678999996 335789999987777778862 344788899999753
No 111
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=34.32 E-value=29 Score=31.37 Aligned_cols=46 Identities=20% Similarity=0.330 Sum_probs=33.2
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc-----CCCCCCC--Cccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD-----GTQSCPQ--CKTR 87 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke-----G~~~Cpq--Ckt~ 87 (1085)
.-+|.||.+-. . ++.+.- .|+.-.||.|-+--.++ +...||. |+..
T Consensus 7 ~~~CPI~~~~~-~----dPV~~~-~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 7 GFTCPITKEEM-K----KPVKNK-VCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp CCBCTTTCSBC-S----SEEEES-SSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred EeECcCcCchh-c----CCEEcC-CCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 34899998653 2 465543 69999999998766544 3468999 8876
No 112
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=34.12 E-value=4.1 Score=35.78 Aligned_cols=35 Identities=9% Similarity=0.108 Sum_probs=27.1
Q ss_pred hHhHhhcCCCCCCCCcccccccCCCCCccCCCCcC
Q 001399 70 YEYERKDGTQSCPQCKTRYKRHKGSPRVEGDDEED 104 (1085)
Q Consensus 70 yeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ee~ 104 (1085)
.+|++.+|.-.|+.|+..|--..|-|..--||...
T Consensus 18 L~~~~~~~~LiC~~cg~~YPI~dGIPvmL~~ear~ 52 (69)
T 2pk7_A 18 LKLSADKTELISKGAGLAYPIRDGIPVMLESEART 52 (69)
T ss_dssp CEECTTSSEEEETTTTEEEEEETTEECCCGGGCEE
T ss_pred CeEeCCCCEEEcCCCCcEecCcCCeeeeChhhccc
Confidence 34555678889999999999999999877665443
No 113
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=33.39 E-value=32 Score=29.66 Aligned_cols=46 Identities=26% Similarity=0.593 Sum_probs=35.8
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH---hhcCCCCCCCCcc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE---RKDGTQSCPQCKT 86 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CpqCkt 86 (1085)
.++..|.+|++. | ..+-|..|.-..=-.|+.-- .-+|.=.||.|+.
T Consensus 10 ~~~~~C~vC~~~------~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 10 APGARCGVCGDG------T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp CTTCCCTTTSCC------T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCCCcCCCCCC------C-eEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 356689999863 4 47889999988889998543 3478899999975
No 114
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=32.18 E-value=20 Score=30.22 Aligned_cols=54 Identities=19% Similarity=0.572 Sum_probs=35.2
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhh----cCCCCCCCCccccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERK----DGTQSCPQCKTRYKRH 91 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerk----eG~~~CpqCkt~Ykr~ 91 (1085)
.+..|.+|+..- .+++..|+|..|.-=.=-.|.....+ .+.-.||.|..+..|.
T Consensus 5 e~~~C~~C~~~~---~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~~ 62 (64)
T 1we9_A 5 SSGQCGACGESY---AADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGPS 62 (64)
T ss_dssp SCCCCSSSCCCC---CSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCSS
T ss_pred CCCCCCCCCCcc---CCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCCC
Confidence 455899998753 34677999998854433445544322 2678899998765443
No 115
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=32.08 E-value=27 Score=32.94 Aligned_cols=45 Identities=27% Similarity=0.586 Sum_probs=26.4
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhcCC-CCCCCCcccc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKDGT-QSCPQCKTRY 88 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~CyeyerkeG~-~~CpqCkt~Y 88 (1085)
.|..|+..+. +.|..|..= =+-|.|+.||.. +-+. ..|..|+++-
T Consensus 31 ~C~~C~~~L~--~~~~~~~~~--~g~~yC~~~y~~--~~~~~~~C~~C~~~I 76 (131)
T 2xjy_A 31 SCDLCGCRLG--EVGRRLYYK--LGRKLCRRDYLR--LFGQDGLCASCDKRI 76 (131)
T ss_dssp BCTTTCCBCS--STTCCEEEE--TTEEECHHHHHH--HHCCCEECTTTCCEE
T ss_pred ccCcCCCccc--cCCCeEEEE--CCEEeecCchhh--hCCCccChhhcCCcc
Confidence 6777776643 223333321 134689999943 2332 4899999876
No 116
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=31.52 E-value=16 Score=34.58 Aligned_cols=26 Identities=27% Similarity=0.787 Sum_probs=18.5
Q ss_pred eecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 56 VACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 56 vaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
..|.+|||-. -++-.....||.||..
T Consensus 68 ~~C~~CG~~F------~~~~~kPsrCP~CkSe 93 (105)
T 2gmg_A 68 AQCRKCGFVF------KAEINIPSRCPKCKSE 93 (105)
T ss_dssp CBBTTTCCBC------CCCSSCCSSCSSSCCC
T ss_pred cChhhCcCee------cccCCCCCCCcCCCCC
Confidence 3599998886 1334555899999865
No 117
>1m4f_A Hepcidin; strand-loop-strand, beta-sheet, hairpin loop, antimicrobial protein; NMR {Synthetic} SCOP: j.3.1.8 PDB: 2kef_A 3h0t_C
Probab=31.49 E-value=4.7 Score=29.17 Aligned_cols=23 Identities=30% Similarity=0.662 Sum_probs=15.7
Q ss_pred CCCcchhhhHhHhhcCCCCCCCCcc
Q 001399 62 AFPVCRPCYEYERKDGTQSCPQCKT 86 (1085)
Q Consensus 62 ~fpvCr~CyeyerkeG~~~CpqCkt 86 (1085)
.||+||+|+-=-++ ..+...|++
T Consensus 3 ~~~iC~~CC~cc~~--~~CG~cC~~ 25 (26)
T 1m4f_A 3 HFPICIFCCGCCHR--SKCGMCCKT 25 (26)
T ss_dssp SSCCCEEEECSSSS--SSEEEECCC
T ss_pred cCCccceecccCCC--CCcCCeeCC
Confidence 59999999944444 456666665
No 118
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=31.44 E-value=14 Score=45.18 Aligned_cols=54 Identities=30% Similarity=0.823 Sum_probs=40.4
Q ss_pred CCccccccCCccccCCC---CCeeeecCCCC--------------------CCcchhhh-HhH----hh--cCCCCCCCC
Q 001399 35 NGQTCQICGDNVGLTAM---GDIFVACNECA--------------------FPVCRPCY-EYE----RK--DGTQSCPQC 84 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~---G~~fvaC~eC~--------------------fpvCr~Cy-eye----rk--eG~~~CpqC 84 (1085)
.-.+|.-|=.++---.| +-+|+-|-.|| ||.|..|. ||+ |+ ----+||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 45589999998743222 55899999994 99999996 455 44 122599999
Q ss_pred cccc
Q 001399 85 KTRY 88 (1085)
Q Consensus 85 kt~Y 88 (1085)
+=++
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 9887
No 119
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=30.58 E-value=30 Score=27.84 Aligned_cols=45 Identities=31% Similarity=0.833 Sum_probs=32.5
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhH---hHhhcCCCCCCCCcc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE---YERKDGTQSCPQCKT 86 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye---yerkeG~~~CpqCkt 86 (1085)
.|.+|++. .+++..+.|..|.-..=..|+. .+.-+|.=.||.|..
T Consensus 2 ~C~vC~~~----~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKK----GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCS----SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCC----CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 59999875 2456789999997655566773 234468889999964
No 120
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=30.06 E-value=21 Score=31.41 Aligned_cols=25 Identities=28% Similarity=0.768 Sum_probs=13.9
Q ss_pred ccccccCCccccCCCCCeeeecCCCCC
Q 001399 37 QTCQICGDNVGLTAMGDIFVACNECAF 63 (1085)
Q Consensus 37 ~~C~iCgd~vg~~~~G~~fvaC~eC~f 63 (1085)
-+|.-||.++.+.. ++ -+.|.+|++
T Consensus 29 Y~C~~CG~~~e~~~-~d-~irCp~CG~ 53 (70)
T 1twf_L 29 YICAECSSKLSLSR-TD-AVRCKDCGH 53 (70)
T ss_dssp EECSSSCCEECCCT-TS-TTCCSSSCC
T ss_pred EECCCCCCcceeCC-CC-CccCCCCCc
Confidence 36777777766552 22 134555554
No 121
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.95 E-value=37 Score=29.71 Aligned_cols=38 Identities=21% Similarity=0.534 Sum_probs=25.0
Q ss_pred CCCCCCCCccccccCCcccc----CCCCCee----eecCCCCCCcc
Q 001399 29 KPLKNLNGQTCQICGDNVGL----TAMGDIF----VACNECAFPVC 66 (1085)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~----~~~G~~f----vaC~eC~fpvC 66 (1085)
+|.+......|..|+..|.. .+.|..+ ..|.+|.-++=
T Consensus 8 ~~~~~~~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF~C~~C~~~L~ 53 (80)
T 2dj7_A 8 KPIKIRGPSHCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILT 53 (80)
T ss_dssp CCCCCSSCSCCTTTCCCCSSSCCEEETTEEECTTTCBCSSSCCBCS
T ss_pred CCcCCCCCCCCcCcCCeeCCCeEEEECCcccccccCCcCcCCCCcC
Confidence 55666677899999999853 2345443 35777765553
No 122
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=29.87 E-value=28 Score=35.91 Aligned_cols=54 Identities=20% Similarity=0.456 Sum_probs=36.6
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh-----Hhh-----cCCCCCCCCcccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY-----ERK-----DGTQSCPQCKTRY 88 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey-----erk-----eG~~~CpqCkt~Y 88 (1085)
+|+.|.+|+..-.-++.+...+.|..|.-=+=..|-.. |.- +..=.||.|...-
T Consensus 1 ~G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 1 SGNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp -CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred CcCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 47899999876554444667999999987665555433 221 1357999998653
No 123
>2gai_A DNA topoisomerase I; zinc ribbon; HET: DNA; 1.70A {Thermotoga maritima} PDB: 2gaj_A*
Probab=29.77 E-value=11 Score=45.68 Aligned_cols=45 Identities=9% Similarity=-0.085 Sum_probs=18.0
Q ss_pred cccccC-CccccC--CCCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccc
Q 001399 38 TCQICG-DNVGLT--AMGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTR 87 (1085)
Q Consensus 38 ~C~iCg-d~vg~~--~~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~ 87 (1085)
.|..|| .++-.. ..|..|..| |+||-|+.-.-. +.....||+ +.+
T Consensus 574 ~CP~Cg~g~l~~r~~k~G~~f~gC--s~yp~C~f~~~~--~p~~~~Cp~-~~~ 621 (633)
T 2gai_A 574 FYLKCECGKTRSVKNDEIAVIDDG--KIFLGRKDSESG--SPDGRSVEG-KGN 621 (633)
T ss_dssp EEEECSSSCCEECCTTSBCEEETT--EEEC-----------------------
T ss_pred cCcccCCCcceeecccCCCeEEeC--CCCcCCCCeecC--CccCCcCCC-CCe
Confidence 499998 665442 467789999 566666544322 223478998 643
No 124
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=29.71 E-value=24 Score=39.71 Aligned_cols=43 Identities=30% Similarity=0.763 Sum_probs=31.1
Q ss_pred CccccccCCccccCCCCCeeeecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFVACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fvaC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-+..- .-++. .|+-- .|+.|..-- ..||-|+++..+
T Consensus 295 ~~~C~IC~~~~~----~~v~l---pCgH~~fC~~C~~~~-----~~CP~CR~~i~~ 338 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFI---PCGHLVVCQECAPSL-----RKCPICRGIIKG 338 (345)
T ss_dssp TCBCTTTSSSBC----CEEEE---TTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred CCCCCccCCcCC----ceEEc---CCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence 358999998741 12344 45777 899998632 789999999864
No 125
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=29.65 E-value=43 Score=36.53 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=36.7
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHhhc-CCCCCCC--Cccccc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYERKD-GTQSCPQ--CKTRYK 89 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyerke-G~~~Cpq--Ckt~Yk 89 (1085)
...-+|.||.+-. -++.+ ...||---||.|.+--.++ |...||. |+.++.
T Consensus 179 ~~el~CPIcl~~f-----~DPVt-s~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPY-----EAPLI-SRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBC-----SSEEE-ESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCcc-----cCCee-eCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 3455899999875 23333 3478989999999765554 5678999 999875
No 126
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=29.64 E-value=13 Score=35.66 Aligned_cols=53 Identities=19% Similarity=0.333 Sum_probs=0.4
Q ss_pred CccccccCCccccCC-----------CCCeeeecCCCCCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 36 GQTCQICGDNVGLTA-----------MGDIFVACNECAFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~-----------~G~~fvaC~eC~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
...|.||-+++.... .++.-+.-..|+---|+.|-.-=. ..+..||-|+.+++
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl-~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWL-KTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHH-HcCCcCCCCCCeee
Confidence 358999999875421 222233334678888999984333 33789999999865
No 127
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=29.26 E-value=34 Score=30.76 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=15.8
Q ss_pred CCcchhhhHhHhhcCCCCCCCCcccc
Q 001399 63 FPVCRPCYEYERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 63 fpvCr~CyeyerkeG~~~CpqCkt~Y 88 (1085)
-+.|++||+ ++- ...|.+|+++-
T Consensus 54 ~~yC~~cy~--~~~-~~~C~~C~~~I 76 (101)
T 2cup_A 54 KILCNKCTT--RED-SPKCKGCFKAI 76 (101)
T ss_dssp EEECHHHHT--TCC-CCBCSSSCCBC
T ss_pred EEEChhHhh--hhc-CCccccCCCcc
Confidence 356899984 222 36899998765
No 128
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=28.68 E-value=27 Score=29.27 Aligned_cols=47 Identities=21% Similarity=0.494 Sum_probs=32.1
Q ss_pred CccccccCCccccCCCCCeee--ecCCCCCC-cchhhhHhHhhcCCCCCCCCcccccc
Q 001399 36 GQTCQICGDNVGLTAMGDIFV--ACNECAFP-VCRPCYEYERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~~G~~fv--aC~eC~fp-vCr~CyeyerkeG~~~CpqCkt~Ykr 90 (1085)
...|.||-|.-- .-.++ +| +-- .|..|.+--.+ .+..||-|+.+.+.
T Consensus 7 ~~~C~IC~~~~~----~~~~~~~pC---gH~~~C~~C~~~~~~-~~~~CPiCR~~i~~ 56 (63)
T 2vje_B 7 LKPCSLCEKRPR----DGNIIHGRT---GHLVTCFHCARRLKK-AGASCPICKKEIQL 56 (63)
T ss_dssp GSBCTTTSSSBS----CEEEEETTE---EEEEECHHHHHHHHH-TTCBCTTTCCBCCE
T ss_pred CCCCcccCCcCC----CeEEEecCC---CCHhHHHHHHHHHHH-hCCcCCCcCchhhc
Confidence 458999988631 11244 55 554 79999975544 45899999998753
No 129
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=28.55 E-value=68 Score=29.40 Aligned_cols=52 Identities=23% Similarity=0.482 Sum_probs=36.3
Q ss_pred CCCCCCCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCccc
Q 001399 29 KPLKNLNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKTR 87 (1085)
Q Consensus 29 ~~~~~~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt~ 87 (1085)
......+...|.+||+. | ..+-|..|.-.-=-.|..- ++-+|.=.||.|...
T Consensus 18 ~~~~d~n~~~C~vC~~~------g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 18 FGTLDDSATICRVCQKP------G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp CCSSSSSSSCCSSSCSS------S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred ccccCCCCCcCcCcCCC------C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 34556788899999974 4 4778998865544555521 345788999999854
No 130
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=26.23 E-value=49 Score=33.50 Aligned_cols=24 Identities=29% Similarity=0.604 Sum_probs=16.3
Q ss_pred CcchhhhHhHhhcCCC-CCCCCccccc
Q 001399 64 PVCRPCYEYERKDGTQ-SCPQCKTRYK 89 (1085)
Q Consensus 64 pvCr~CyeyerkeG~~-~CpqCkt~Yk 89 (1085)
|.|+.||. ++-+.+ .|..|+++-.
T Consensus 56 ~yC~~cy~--~~~~~~~~C~~C~~~I~ 80 (188)
T 1rut_X 56 ILCRNDYI--RLFGNSGACSACGQSIP 80 (188)
T ss_dssp EECHHHHH--HHHSCCEECTTTCCEEC
T ss_pred cccccccc--cccccCCccccCCCccc
Confidence 46888884 233444 7999998763
No 131
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=25.49 E-value=16 Score=30.56 Aligned_cols=49 Identities=20% Similarity=0.668 Sum_probs=35.8
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhH--h-HhhcCCCCCCCCcccccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE--Y-ERKDGTQSCPQCKTRYKR 90 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye--y-erkeG~~~CpqCkt~Ykr 90 (1085)
+...|.+|++. | ..+.|..|.-..=..|.. . +.-+|.-.||.|.....+
T Consensus 4 ~~~~C~vC~~~------g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~ 55 (60)
T 2puy_A 4 HEDFCSVCRKS------G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLK 55 (60)
T ss_dssp CCSSCTTTCCC------S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHH
T ss_pred CCCCCcCCCCC------C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhc
Confidence 56689999973 3 578999998666667886 2 234688899999766543
No 132
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=24.79 E-value=20 Score=37.30 Aligned_cols=35 Identities=20% Similarity=0.471 Sum_probs=24.1
Q ss_pred ccccccCCcccc----CCCCCe-eeecCCCCCCcchhhhH
Q 001399 37 QTCQICGDNVGL----TAMGDI-FVACNECAFPVCRPCYE 71 (1085)
Q Consensus 37 ~~C~iCgd~vg~----~~~G~~-fvaC~eC~fpvCr~Cye 71 (1085)
.+|..||.+.-. +.+|+. .+-=+|=-.|+||-||.
T Consensus 152 aiC~~Cg~~A~~~~R~~~~~~~i~IGg~e~Y~~~CR~c~~ 191 (195)
T 1w4r_A 152 AVCMECFREAAYTKRLGTEKEVEVIGGADKYHSVCRLCYF 191 (195)
T ss_dssp EECTTTCSEECEEEESSCCCSSCCCCCTTTEEEECHHHHT
T ss_pred eEecccCCeeeeEEEEcCCCCEEEECCCCcEEEccHHHhh
Confidence 489999987332 234553 44445777899999994
No 133
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=24.37 E-value=43 Score=31.19 Aligned_cols=49 Identities=22% Similarity=0.472 Sum_probs=36.0
Q ss_pred CCCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhHh---hcCCCCCCCCcc
Q 001399 34 LNGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYER---KDGTQSCPQCKT 86 (1085)
Q Consensus 34 ~~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeyer---keG~~~CpqCkt 86 (1085)
.+..+|.+|++.= +.+.++.|..|.-..=..|..... +++.-.||.|++
T Consensus 5 ~~~~~C~~C~~~g----~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~~ 56 (111)
T 2ysm_A 5 SSGANCAVCDSPG----DLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECKV 56 (111)
T ss_dssp CCCSCBTTTCCCC----CTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTCC
T ss_pred CCCCCCcCCCCCC----CCcCCeECCCCCCCcChHHhCCccccccccCccCCcCCc
Confidence 4677999999861 224479999998777677776553 367888999874
No 134
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=23.47 E-value=37 Score=35.16 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=35.7
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHh---HhhcCCCCCCCCcccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEY---ERKDGTQSCPQCKTRY 88 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyey---erkeG~~~CpqCkt~Y 88 (1085)
+...|.+|++. | ..+-|..|.-..--.|..- +.-+|.=.||.|...-
T Consensus 6 ~~~~C~~C~~~------g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNG------G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCC------E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCC------C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 56689999964 3 4789999988777888732 2447889999998654
No 135
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=23.46 E-value=73 Score=26.76 Aligned_cols=14 Identities=29% Similarity=0.786 Sum_probs=7.1
Q ss_pred hcCCCCCCCCcccc
Q 001399 75 KDGTQSCPQCKTRY 88 (1085)
Q Consensus 75 keG~~~CpqCkt~Y 88 (1085)
+.|..+|..|+.-|
T Consensus 27 ~~ge~vC~~CGlVl 40 (58)
T 1dl6_A 27 RAGDMICPECGLVV 40 (58)
T ss_dssp SSCCEECTTTCCEE
T ss_pred CCCeEEeCCCCCEE
Confidence 34445555555555
No 136
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.28 E-value=72 Score=26.72 Aligned_cols=9 Identities=33% Similarity=0.877 Sum_probs=6.0
Q ss_pred CCcchhhhH
Q 001399 63 FPVCRPCYE 71 (1085)
Q Consensus 63 fpvCr~Cye 71 (1085)
-+.|++||+
T Consensus 54 ~~yC~~cy~ 62 (72)
T 1x61_A 54 RAYCEGCYV 62 (72)
T ss_dssp CEEEHHHHH
T ss_pred eEECHHHHH
Confidence 366777774
No 137
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=23.16 E-value=26 Score=35.32 Aligned_cols=35 Identities=37% Similarity=0.693 Sum_probs=24.8
Q ss_pred ccccccC-Ccccc----CCCCC-eeeecCCCCCCcchhhhH
Q 001399 37 QTCQICG-DNVGL----TAMGD-IFVACNECAFPVCRPCYE 71 (1085)
Q Consensus 37 ~~C~iCg-d~vg~----~~~G~-~fvaC~eC~fpvCr~Cye 71 (1085)
.+|..|| .+.-. ..+|+ .++--+|=--|+||-||.
T Consensus 138 ~ic~~cg~~~a~~~~r~~~~~~~~~ig~~~~Y~~~cr~~~~ 178 (184)
T 2orw_A 138 AVCHRCGEYNATLTLKVAGGEEEIDVGGQEKYIAVCRDCYN 178 (184)
T ss_dssp BCCTTTCCSCBCEEEECSSCSCSCCCCSTTTEEEECHHHHH
T ss_pred eecCCCCCeeceeEEEEcCCCCEEEECCCCcEEEccHHHHh
Confidence 4899999 55332 23455 466667878899999994
No 138
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.53 E-value=31 Score=28.41 Aligned_cols=15 Identities=27% Similarity=1.034 Sum_probs=13.4
Q ss_pred CCCCCCCCccccccc
Q 001399 77 GTQSCPQCKTRYKRH 91 (1085)
Q Consensus 77 G~~~CpqCkt~Ykr~ 91 (1085)
|...||+|+..|+..
T Consensus 11 ~~~~CPrCn~~f~~~ 25 (49)
T 2e72_A 11 GRKICPRCNAQFRVT 25 (49)
T ss_dssp SCCCCTTTCCCCSSH
T ss_pred CceeCCcccccccch
Confidence 678999999999876
No 139
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=22.45 E-value=9.8 Score=40.39 Aligned_cols=37 Identities=32% Similarity=0.567 Sum_probs=24.2
Q ss_pred ccccccCCccccC---CCC-------Ce-eeecCCCCCCcchhhhHhH
Q 001399 37 QTCQICGDNVGLT---AMG-------DI-FVACNECAFPVCRPCYEYE 73 (1085)
Q Consensus 37 ~~C~iCgd~vg~~---~~G-------~~-fvaC~eC~fpvCr~Cyeye 73 (1085)
.+|..||.+.-.+ .+| +. .+-=+|=-.|+||-||.-.
T Consensus 163 aiC~~CG~~A~~~~R~~~g~~~~~~g~~i~IGg~e~Y~~~CR~cy~~~ 210 (219)
T 3e2i_A 163 AVCAVCGSSSSRTQRLINGKPAKIDDPIILVGANESYEPRCRAHHIVA 210 (219)
T ss_dssp EECTTTCSEECEEEEEETTEECBTTCCSCCSSCCEEEEEECGGGCCCB
T ss_pred eEccCCCCcceEEEEEECCcccccCCCEEEECCCccEEEcCHHhhcCc
Confidence 4899999884332 344 32 3444566789999999543
No 140
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.35 E-value=61 Score=28.09 Aligned_cols=37 Identities=22% Similarity=0.486 Sum_probs=22.4
Q ss_pred CCCCCccccccCCccc---cCCCCCee----eecCCCCCCcchh
Q 001399 32 KNLNGQTCQICGDNVG---LTAMGDIF----VACNECAFPVCRP 68 (1085)
Q Consensus 32 ~~~~~~~C~iCgd~vg---~~~~G~~f----vaC~eC~fpvCr~ 68 (1085)
......+|..|+..|. +.+.|..+ .-|.+|.-++=..
T Consensus 11 ~~~~~~~C~~C~~~I~~~~v~a~~~~~H~~CF~C~~C~~~L~~~ 54 (79)
T 2cor_A 11 RGLGKYICQKCHAIIDEQPLIFKNDPYHPDHFNCANCGKELTAD 54 (79)
T ss_dssp CCCCCCBCTTTCCBCCSCCCCCSSSCCCTTTSBCSSSCCBCCTT
T ss_pred hccCCCCCccCCCEecceEEEECcceeCCCCCEeCCCCCccCCC
Confidence 3455679999999876 22345443 2466776555444
No 141
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=21.64 E-value=66 Score=30.07 Aligned_cols=25 Identities=32% Similarity=0.878 Sum_probs=18.0
Q ss_pred CCCcchhhhHhHhhcCCCCCCCCccccc
Q 001399 62 AFPVCRPCYEYERKDGTQSCPQCKTRYK 89 (1085)
Q Consensus 62 ~fpvCr~CyeyerkeG~~~CpqCkt~Yk 89 (1085)
+-|.|++||.- +- ...|..|+++-.
T Consensus 50 g~~yC~~cy~~--~~-~~~C~~C~~~I~ 74 (126)
T 2xqn_T 50 DKPVCKPCYVK--NH-AVVCQGCHNAID 74 (126)
T ss_dssp TEEEEHHHHHH--HS-CCBCTTTCSBCC
T ss_pred CEEechHHhCc--Cc-CccCcccCCcCC
Confidence 45789999942 23 368999998763
No 142
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=21.63 E-value=40 Score=34.16 Aligned_cols=46 Identities=22% Similarity=0.600 Sum_probs=34.5
Q ss_pred CCccccccCCccccCCCCCeeeecCCCCCCcchhhhHhH---hhcCCCCCCCCccc
Q 001399 35 NGQTCQICGDNVGLTAMGDIFVACNECAFPVCRPCYEYE---RKDGTQSCPQCKTR 87 (1085)
Q Consensus 35 ~~~~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cyeye---rkeG~~~CpqCkt~ 87 (1085)
|...|.+|++. |+ .+-|..|.-.---.|..-. .-+|.=.||.|+..
T Consensus 3 ~~~~C~~C~~~------g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~ 51 (184)
T 3o36_A 3 NEDWCAVCQNG------GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDL 51 (184)
T ss_dssp SCSSCTTTCCC------SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCS
T ss_pred CCCccccCCCC------Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCc
Confidence 45689999964 55 7889999877777886322 34788999999854
No 143
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=21.42 E-value=29 Score=31.45 Aligned_cols=16 Identities=19% Similarity=0.418 Sum_probs=9.5
Q ss_pred CCCCCCCCccccccCC
Q 001399 29 KPLKNLNGQTCQICGD 44 (1085)
Q Consensus 29 ~~~~~~~~~~C~iCgd 44 (1085)
..+.....-+|.+||-
T Consensus 20 ~~~~em~~y~C~vCGy 35 (81)
T 2kn9_A 20 GSMNDYKLFRCIQCGF 35 (81)
T ss_dssp CCSSCCCEEEETTTCC
T ss_pred cCCCCcceEEeCCCCE
Confidence 3444455567777773
No 144
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.25 E-value=50 Score=30.98 Aligned_cols=46 Identities=24% Similarity=0.585 Sum_probs=25.6
Q ss_pred cccccCCccccCCCCCeeeecCCCCCCcchhhhH---hHhhcCCCCCCCCcc
Q 001399 38 TCQICGDNVGLTAMGDIFVACNECAFPVCRPCYE---YERKDGTQSCPQCKT 86 (1085)
Q Consensus 38 ~C~iCgd~vg~~~~G~~fvaC~eC~fpvCr~Cye---yerkeG~~~CpqCkt 86 (1085)
+|++|++. ..+.+..+-|..|.-..=-.|.. -+.-+|.=.||.|+.
T Consensus 63 ~C~vC~~~---~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQ---GKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCC---CCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCc---CCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 56677654 12334566677776555555552 123356667777764
No 145
>2j6a_A Protein TRM112; translation termination, methyltransferase, transferase, ERF1, nuclear protein, protein methylation; 1.7A {Saccharomyces cerevisiae}
Probab=20.75 E-value=15 Score=36.47 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=28.7
Q ss_pred hhhHhHhhcCCCCCCCCcccccccCCCCCccCCC
Q 001399 68 PCYEYERKDGTQSCPQCKTRYKRHKGSPRVEGDD 101 (1085)
Q Consensus 68 ~CyeyerkeG~~~CpqCkt~Ykr~kgsprv~gd~ 101 (1085)
--.||+..||.-.||.|+..|--..|=|..--||
T Consensus 99 ~lle~~v~eg~L~C~~cg~~YPI~dGIP~mL~~e 132 (141)
T 2j6a_A 99 LLLQTSIAEGEMKCRNCGHIYYIKNGIPNLLLPP 132 (141)
T ss_dssp HHTTEEEEEEEEECTTTCCEEEEETTEESSCCCS
T ss_pred HHhheeccCCEEECCCCCCcccccCCccCcCCcH
Confidence 3567778899999999999999888888777665
No 146
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=20.62 E-value=34 Score=31.09 Aligned_cols=29 Identities=31% Similarity=0.765 Sum_probs=20.8
Q ss_pred CccccccCCccccCC----CCCeeeecCCCCCCc
Q 001399 36 GQTCQICGDNVGLTA----MGDIFVACNECAFPV 65 (1085)
Q Consensus 36 ~~~C~iCgd~vg~~~----~G~~fvaC~eC~fpv 65 (1085)
...|+ |||..-+++ +|+..|.|..|..-|
T Consensus 30 ~y~Cr-CGd~F~it~edL~~ge~iv~C~sCSL~I 62 (83)
T 1wge_A 30 FYPCP-CGDNFAITKEDLENGEDVATCPSCSLII 62 (83)
T ss_dssp EECCS-SSSCEEEEHHHHHTTCCEEECTTTCCEE
T ss_pred EEeCC-CCCEEEECHHHHhCCCEEEECCCCceEE
Confidence 34687 888866653 688888888887655
No 147
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=20.59 E-value=28 Score=28.27 Aligned_cols=8 Identities=38% Similarity=1.161 Sum_probs=6.4
Q ss_pred CCCCCccc
Q 001399 80 SCPQCKTR 87 (1085)
Q Consensus 80 ~CpqCkt~ 87 (1085)
.||.|+.+
T Consensus 32 ~CP~Cg~~ 39 (46)
T 6rxn_A 32 CCPVCGVS 39 (46)
T ss_dssp BCTTTCCB
T ss_pred cCcCCCCc
Confidence 78888875
No 148
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=20.44 E-value=20 Score=36.91 Aligned_cols=10 Identities=30% Similarity=0.876 Sum_probs=7.8
Q ss_pred CCCCCCcccc
Q 001399 79 QSCPQCKTRY 88 (1085)
Q Consensus 79 ~~CpqCkt~Y 88 (1085)
..||.|+.+=
T Consensus 172 ~~CP~C~~~k 181 (191)
T 1lko_A 172 ELCPACAHPK 181 (191)
T ss_dssp SBCTTTCCBG
T ss_pred CCCCCCcCCH
Confidence 4899998863
No 149
>3q80_A 2-C-methyl-D-erythritol 4-phosphate cytidyltransf; TB structural genomics consortium, TBSGC, rossman fold; HET: CDM; 2.00A {Mycobacterium tuberculosis} SCOP: c.68.1.0 PDB: 3q7u_A* 3okr_A 2xwn_A*
Probab=20.02 E-value=86 Score=32.82 Aligned_cols=28 Identities=11% Similarity=0.154 Sum_probs=23.8
Q ss_pred CcEEEEecCCCCCCchHHHHHHHHhhcC
Q 001399 558 GAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
Q Consensus 558 g~~Il~lDcD~~~~~~~~Lr~am~ff~D 585 (1085)
.++|+++|||+=.-+++.+++.+-.+.+
T Consensus 100 ~d~Vlv~~~d~Pli~~~~i~~li~~~~~ 127 (231)
T 3q80_A 100 PEFVLVHDAARALTPPALVARVVEALRD 127 (231)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCcCCCCHHHHHHHHHHHhh
Confidence 5899999999865679999999887765
Done!