BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001400
(1085 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 61/203 (30%), Positives = 102/203 (50%), Gaps = 14/203 (6%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L +V F G + +VG +G+GKTTL+ +LAG G+I++ G P +
Sbjct: 26 VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLLAAA---GEIFLDGSPADPFLLRKN 82
Query: 904 SGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIG 962
GY QN G TV E + FS + E E+ R +++V+ELV L+ L+ A
Sbjct: 83 VGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEM---RKRIKKVLELVGLSGLAAA--- 136
Query: 963 LPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
+N LS Q++RL IA L + + +DEP S LD + + + + ++ N G+ I+
Sbjct: 137 -DPLN-LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGII 194
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
H+ ++ + D +L + G
Sbjct: 195 LVTHE--LEYLDDMDFILHISNG 215
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 66/142 (46%), Gaps = 18/142 (12%)
Query: 254 KIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEMLKGISGGQ 311
+I G +ED+ ++ L + ++ +++++GL AD L +SGGQ
Sbjct: 93 QIIGATVEEDVAFSLEIMGLDESEMRKRIKKVLELVGLSGLAAADPL-------NLSGGQ 145
Query: 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPA 368
K+RL +L R L +DE + LD + +Q+++ LK+ + I L+
Sbjct: 146 KQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKG------IILVTHE 199
Query: 369 PEAYELFDDVILLSEGQIVYQG 390
E + D ++ +S G I + G
Sbjct: 200 LEYLDDMDFILHISNGTIDFCG 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 63.9 bits (154), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/235 (25%), Positives = 112/235 (47%), Gaps = 29/235 (12%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 897
+D Q+L +++ +P + A G SG GK+T+ +L + G+I I G P
Sbjct: 12 DDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLL--ERFYQPTAGEITIDGQPIDNI 69
Query: 898 --ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE-----IELETQRAFVEEVMEL 950
E + G+ Q+ G T+ E+L + E ++L R+FVE + +
Sbjct: 70 SLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQ 128
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+ +G G+ +S QR+RL IA + NP I+ +DE T+ LD+ + ++V +
Sbjct: 129 LNTE------VGERGVK-ISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKA 181
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG--------GELIYAGPLGSK 1057
+ +++ GRT + H+ S + D++ F+++G EL+ PL +K
Sbjct: 182 LDSLMK-GRTTLVIAHRLSTIV--DADKIYFIEKGQITGSGKHNELVATHPLYAK 233
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 58/248 (23%), Positives = 91/248 (36%), Gaps = 52/248 (20%)
Query: 150 ILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPP- 208
IL D+S +P+ + GP GK +G+IT +G
Sbjct: 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQP---TAGEITIDGQPIDNISLEN 73
Query: 209 -RTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL--- 264
R+ QD + T+RE L + + G DEDL
Sbjct: 74 WRSQIGFVSQDSAIMAGTIRENLTYG---------------------LEGDYTDEDLWQV 112
Query: 265 -DI-FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322
D+ F +SF VE + L +T VG+ +K ISGGQ++RL +
Sbjct: 113 LDLAFARSF----------VENMPDQL------NTEVGERGVK-ISGGQRQRLAIARAFL 155
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382
++L +DE + LDS + + K L + + L +A D + +
Sbjct: 156 RNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDA----DKIYFIE 211
Query: 383 EGQIVYQG 390
+GQI G
Sbjct: 212 KGQITGSG 219
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With
Tnp-Adp
Length = 243
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 76
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 127
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 128 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 181 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 187
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 74
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 125
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 126 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 179 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 213
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 185
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 186 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound
State
Length = 247
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 60/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 191
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQE 898
L++L + R G + ++G SG+GK+T + ++L G II I +
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
G Q P +TVL ++ + P ++ + + MEL++ L
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 130
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + N G
Sbjct: 131 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 188
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
T+V H+ E D +LFM GG +I G
Sbjct: 189 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 220
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ +R+ L +++ DE ++ LD +++ +K A +G T++ +
Sbjct: 139 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 196
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
A E+ D V+ + G I+ +G + D
Sbjct: 197 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 227
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 58/214 (27%), Positives = 92/214 (42%), Gaps = 12/214 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---DVLAGRKTGGIIEGDIYISGYPKRQE 898
L++L + R G + ++G SG+GK+T + ++L G II I +
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
G Q P +TVL ++ + P ++ + + MEL++ L
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLA-----PMKVRKWPREKAEAKAMELLDKVGLKD 151
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
P + LS Q +R+ IA L P I+ DEPTS LD V+ ++ + N G
Sbjct: 152 KAHAYP--DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEG 209
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
T+V H+ E D +LFM GG +I G
Sbjct: 210 MTMVVVTHEMGF-AREVGDRVLFMD-GGYIIEEG 241
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 2/91 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ +R+ L +++ DE ++ LD +++ +K A +G T++ +
Sbjct: 160 LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ--LANEGMTMVVVTH 217
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
A E+ D V+ + G I+ +G + D
Sbjct: 218 EMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 912
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 1030
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1031 DIFESFDELLFMKRG 1045
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 62.4 bits (150), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG +G+GK+TL ++ + I E G + I G+
Sbjct: 20 ILDNINLSIKQGEVIGIVGRAGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 76
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 77 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 127
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 128 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 181 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 215
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 132 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 187
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 188 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 227
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 912
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 1030
QR+R+ I LVA PS+ +DEP S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1031 DIFESFDELLFMKRG 1045
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
DE + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DEPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 105/219 (47%), Gaps = 31/219 (14%)
Query: 829 PVELKQEGVLEDRLQ---------LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879
P+E+KQ + D + +L ++ + G A VG+SG GK+TL++++ +
Sbjct: 332 PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIP--R 389
Query: 880 TGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELET 939
+ G I I G+ I + + + GL +++LFS ++ I L
Sbjct: 390 FYDVTSGQILIDGH--------NIKDFLTGSLRNQIGLVQQDNILFSDTVK--ENILLGR 439
Query: 940 QRAFVEEVMELVELTSLSGALIGLP-------GING--LSTEQRKRLTIAVELVANPSIV 990
A EEV+E ++ + ++ LP G G LS Q++RL+IA + NP I+
Sbjct: 440 PTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL 499
Query: 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029
+DE TS LD + +I+ + ++++ RT + H+ S
Sbjct: 500 ILDEATSALDLESESIIQEAL-DVLSKDRTTLIVAHRLS 537
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 5/103 (4%)
Query: 288 ILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIK 347
I+ L DT VG+ +K +SGGQK+RL+ + + +L +DE ++ LD + I +
Sbjct: 460 IMNLPQGYDTEVGERGVK-LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQE 518
Query: 348 YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
L ++ D TT+I + + + D ++++ G IV G
Sbjct: 519 ALDVLSK--DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 104/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ D+ TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ H+ S ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVIIIAHRLS--TVKNADRIIVMEKG 219
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L D+ ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH---KI 191
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAHRLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L NV + G +++G SG+GK+T+++++ EG++YI +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELT 78
Query: 902 RIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+I G+ Q P LT LE++ + + E +R E +++ EL
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER- 137
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 1016
N LS Q++R+ IA L NP I+ D+PT LD++ +M+ ++ +
Sbjct: 138 ---FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE 194
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G+T+V H I++ + ++++K G
Sbjct: 195 DGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
+SGGQ++R+ L ++ D+ + LDS T +I++ LK DG TV+
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEE-DGKTVV 200
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 17/195 (8%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET--FARISGYCEQNDI 912
G VG SG GK+TL+ ++AG +T I GD++I G + +T R G Q+
Sbjct: 29 GEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFI-GEKRMNDTPPAERGVGMVFQSYA 85
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE 972
P L+V E++ F L ++ E+ QR V +V E+++L L L P LS
Sbjct: 86 LYPHLSVAENMSFGLKL-AGAKKEVINQR--VNQVAEVLQLAHL---LDRKP--KALSGG 137
Query: 973 QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR--TVRNIVNTGRTIVCTIHQPSI 1030
QR+R+ I LVA PS+ +D+P S LDA A + MR R GRT++ H +
Sbjct: 138 QRQRVAIGRTLVAEPSVFLLDQPLSNLDA-ALRVQMRIEISRLHKRLGRTMIYVTHD-QV 195
Query: 1031 DIFESFDELLFMKRG 1045
+ D+++ + G
Sbjct: 196 EAMTLADKIVVLDAG 210
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 3/120 (2%)
Query: 271 FALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFM 330
L G K ++ + + ++ + A L D K +SGGQ++R+ G LV V +
Sbjct: 100 LKLAGAKKEVINQRVNQVAEVLQLAHLL--DRKPKALSGGQRQRVAIGRTLVAEPSVFLL 157
Query: 331 DEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
D+ + LD++ Q+ + + L G T+I + EA L D +++L G++ G
Sbjct: 158 DQPLSNLDAALRVQMRIEISRLHKRL-GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 16/209 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFA 901
L NV + G +++G SG+GK+T+++++ EG++YI +
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKP--TEGEVYIDNIKTNDLDDDELT 78
Query: 902 RIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
+I G+ Q P LT LE++ + + E +R E +++ EL
Sbjct: 79 KIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER- 137
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI-VN 1016
N LS Q++R+ IA L NP I+ D+PT LD++ +M+ ++ +
Sbjct: 138 ---FANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE 194
Query: 1017 TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
G+T+V H I++ + ++++K G
Sbjct: 195 DGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ L ++ D+ + LDS T +I++ LK DG TV+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEE-DGKTVVVVTH 204
Query: 367 PAPEAYELFDDVILLSEGQI 386
A + +I L +G++
Sbjct: 205 DINVA-RFGERIIYLKDGEV 223
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 907
+ G L+G SG GKTT + ++AG + G I GD ++ P + + +
Sbjct: 34 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 90
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
Q+ P +TV E++ F ++ + E++ + + E++++ EL + A
Sbjct: 91 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 141
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + +
Sbjct: 142 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 201
Query: 1028 PSIDIFESFDELLFMKRGGELIYAGP 1053
++ D + M RG L P
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIGSP 227
Score = 36.2 bits (82), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT I +
Sbjct: 143 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 201
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
EA + D + +++ GQ++ G
Sbjct: 202 DQVEAMTMGDRIAVMNRGQLLQIG 225
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 15/206 (7%)
Query: 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYC 907
+ G L+G SG GKTT + ++AG + G I GD ++ P + + +
Sbjct: 33 TIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF--- 89
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
Q+ P +TV E++ F ++ + E++ + + E++++ EL + A
Sbjct: 90 -QSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA-------- 140
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS QR+R+ +A +V P ++ MDEP S LDA+ + ++ + + +
Sbjct: 141 QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTH 200
Query: 1028 PSIDIFESFDELLFMKRGGELIYAGP 1053
++ D + M RG L P
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIGSP 226
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ +V VL MDE + LD+ + +K + L TT I +
Sbjct: 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTT-IYVTH 200
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
EA + D + +++ GQ++ G
Sbjct: 201 DQVEAMTMGDRIAVMNRGQLLQIG 224
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR-QETFA 901
+N+ R G+L G SGAGKTT M ++AG TG + D ++ K
Sbjct: 26 INIENGERFGIL----GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G Q P LT E++ F S+ E+ R VEEV +++++ + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHV---LN 135
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR---AAAIVMRTVRNIVNTG 1018
P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ G
Sbjct: 136 HFP--RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--RLG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGG-------ELIYAGPLGSKSCELI 1062
T++ H P+ DIF D + + +G E +Y P+ + LI
Sbjct: 192 VTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Score = 29.6 bits (65), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 6/109 (5%)
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
VE + KIL + V + + +SG Q++R+ LV +L +DE + LD+
Sbjct: 121 VEEVAKILDIHH-----VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
+K L G T++ + + + + D V +L +G++V G
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 115/237 (48%), Gaps = 33/237 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++T +PG ALVG +G+GKTT++++L + + G I + G R+ + +
Sbjct: 370 VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLM--RFYDVDRGQILVDGIDIRKIKRSSL 427
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S G+ + +++LFS ++ ++ A EE+ E +LT + L
Sbjct: 428 RS--------SIGIVLQDTILFSTTVK--ENLKYGNPGATDEEIKEAAKLTHSDHFIKHL 477
Query: 964 P-------GING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
P NG LS QR+ L I +ANP I+ +DE TS +D + + + +
Sbjct: 478 PEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKL 537
Query: 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIK----YFEV 1067
+ G+T + H+ ++ ++ D L+ + R GE++ G K ELI+ Y+E+
Sbjct: 538 ME-GKTSIIIAHR--LNTIKNAD-LIIVLRDGEIVEMG----KHDELIQKRGFYYEL 586
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 110/231 (47%), Gaps = 29/231 (12%)
Query: 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKR-QETFA 901
+N+ R G+L G SGAGKTT M ++AG TG + D ++ K
Sbjct: 26 INIENGERFGIL----GPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G Q P LT E++ F S+ E+ R VEEV +++++ + L
Sbjct: 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI---RKRVEEVAKILDIHHV---LN 135
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR---AAAIVMRTVRNIVNTG 1018
P LS Q++R+ +A LV +PS++ +DEP S LDAR +A +++ V++ G
Sbjct: 136 HFP--RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQS--RLG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGG-------ELIYAGPLGSKSCELI 1062
T++ H P+ DIF D + + +G E +Y P+ + LI
Sbjct: 192 VTLLVVSHDPA-DIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLI 241
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 6/109 (5%)
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
VE + KIL + V + + +SGGQ++R+ LV +L +DE + LD+
Sbjct: 121 VEEVAKILDIHH-----VLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARM 175
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQG 390
+K L G T++ + + + + D V +L +G++V G
Sbjct: 176 RDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 74
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 75 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 125
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 126 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ I + ++ D ++ M++G
Sbjct: 179 MRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 213
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 130 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 185
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 186 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 225
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter
Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 103/218 (47%), Gaps = 38/218 (17%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE-GDIYISGYP---KRQET 899
+L N+ + + G + +VG SG+GK+TL ++ + I E G + I G+
Sbjct: 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLI---QRFYIPENGQVLIDGHDLALADPNW 80
Query: 900 FARISGYCEQNDI------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV 947
R G Q+++ +PG++V E ++++A +L F+ E+
Sbjct: 81 LRRQVGVVLQDNVLLNRSIIDNISLANPGMSV-EKVIYAA--------KLAGAHDFISEL 131
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
E ++G G GLS QR+R+ IA LV NP I+ DE TS LD + ++
Sbjct: 132 REGYN------TIVGEQGA-GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
MR + I GRT++ I + ++ D ++ M++G
Sbjct: 185 MRNMHKIC-KGRTVI--IIAARLSTVKNADRIIVMEKG 219
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T+VG E G+SGGQ++R+ LV ++L DE ++ LD + + I++ + +
Sbjct: 136 NTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH---KI 191
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
G TVI ++ + D +I++ +G+IV QG +L
Sbjct: 192 CKGRTVI-IIAARLSTVKNADRIIVMEKGKIVEQGKHKELL 231
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/177 (28%), Positives = 85/177 (48%), Gaps = 15/177 (8%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQ 897
+++ + V+ + G AL+G SG GKTT + +LAG +G I D+ ++ P +
Sbjct: 15 KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY 74
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
R G QN P +TV E++ F R S+ E+E + V+E+ +
Sbjct: 75 ----REVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKR------VVEIARKLLID 124
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L P LS Q++R+ +A LV P ++ DEP S LDA I+ ++++
Sbjct: 125 NLLDRKP--TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHL 179
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 55/121 (45%), Gaps = 5/121 (4%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ LV +VL DE + LD++ + +KH + L G T + +
Sbjct: 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQEL-GITSVYVTH 192
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLD----FFASMGFSCPKRKNVADFLQEVTSK 422
EA + + + ++G++V G V D F + P + DF V +K
Sbjct: 193 DQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIGNPPTNFLRDFSVSVENK 252
Query: 423 K 423
+
Sbjct: 253 Q 253
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/211 (26%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 899
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 73
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ ++ Q + +L S + LP E++ + V EL+ L L
Sbjct: 74 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 133
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 1018
P + LS Q++R+ IA L +NP ++ DE TS LD ++ +++I G
Sbjct: 134 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLG 191
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
TI+ H+ +D+ + + + + GELI
Sbjct: 192 LTILLITHE--MDVVKRICDCVAVISNGELI 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D +SGGQK+R+ L +VL DE ++ LD +TT I++ LK R L G T
Sbjct: 135 DSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRL-GLT 193
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV- 419
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 245
Query: 420 ---TSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 470
+ QE+ + P+ + +F TG+++ L RRFN
Sbjct: 246 HLDIPEDYQERLQAEPFTDCVPMLRLEF--------TGQSVDAPLLSETARRFN 291
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 57.0 bits (136), Expect = 5e-08, Method: Composition-based stats.
Identities = 52/215 (24%), Positives = 94/215 (43%), Gaps = 16/215 (7%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ- 897
E+ + L NV + G ++ G SG+GK+T ++++ EG++YI
Sbjct: 15 EEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKP--TEGEVYIDNIKTNDL 72
Query: 898 --ETFARIS----GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
+ +I G+ Q P LT LE++ + E +R E ++
Sbjct: 73 DDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXA 132
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
EL N LS Q++R+ IA L NP I+ DEPT LD++ + + +
Sbjct: 133 ELEER----FANHKPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLL 188
Query: 1012 RNI-VNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + G+T+V H I++ + ++++K G
Sbjct: 189 KKLNEEDGKTVVVVTH--DINVARFGERIIYLKDG 221
Score = 35.4 bits (80), Expect = 0.16, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 2/80 (2%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ L ++ DE + LDS T +I + LK DG TV+ +
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEE-DGKTVVVVTH 204
Query: 367 PAPEAYELFDDVILLSEGQI 386
A + +I L +G++
Sbjct: 205 DINVA-RFGERIIYLKDGEV 223
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/179 (30%), Positives = 87/179 (48%), Gaps = 21/179 (11%)
Query: 830 VELKQEGVLED--RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGII- 884
VE+K E +++ L N+ + G AL+G SG+GK+TL+ +AG + T G I
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 885 --EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
E D+ + P + R G QN P +TV +++ F LR E++ +
Sbjct: 62 FDEKDV--TELPPKD----RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKK-- 113
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
V E+ ++ + L P LS Q++R+ IA LV P ++ +DEP S LDA
Sbjct: 114 ----VREVAKMLHIDKLLNRYPW--QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDA 166
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 55/288 (19%)
Query: 130 MTEALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXX 189
M E L + GN T L++++ I+ LLGP SGK
Sbjct: 1 MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--- 54
Query: 190 QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV-AEMTVRETLDFAGQCQGVGSKYDMITE 248
SGKI ++ E P + + Q+W + MTV + + F + +
Sbjct: 55 PTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKA--------- 105
Query: 249 LARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308
P E++D ++ A K+L +D + +S
Sbjct: 106 -----------PREEIDKKVREVA--------------KMLHIDKLLNRYPWQ-----LS 135
Query: 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368
GGQ++R+ LV VL +DE + LD+ ++ LK + L G T + +
Sbjct: 136 GGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKEL-GITTVYVTHDQ 194
Query: 369 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA + D + ++ EG+I+ G V + PK K V FL
Sbjct: 195 AEALAMADRIAVIREGEILQVGTPDEV--------YYKPKYKFVGGFL 234
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 96/211 (45%), Gaps = 11/211 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 899
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ ++ Q + +L S + LP E++ + V EL+ L L
Sbjct: 97 ESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 1018
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++I G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
TI+ H+ +D+ + + + + GELI
Sbjct: 215 LTILLITHE--MDVVKRICDCVAVISNGELI 243
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 74/174 (42%), Gaps = 21/174 (12%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D +SGGQK+R+ L +VL D+ ++ LD +TT I++ LK R L G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV- 419
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 217 ILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 420 ---TSKKDQEQYWSNPYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 470
+ QE+ + P+ + +F TG+++ L RRFN
Sbjct: 269 HLDIPEDYQERLQAEPFTDCVPMLRLEF--------TGQSVDAPLLSETARRFN 314
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E 898
+Q+L + + G ALVG SG GK+T + ++ ++ ++G + I G R
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
I G Q + T+ E++ + EIE + A + +++L
Sbjct: 461 YLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFD 517
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+G G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 1019 RTIVCTIHQPSI----DIFESFDELLFMKRG 1045
RT + H+ S D+ FD + +++G
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQ 909
+ G ALVG SG GK+T++ +L + + G +++ G +Q + G Q
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 910 NDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
I ++ E++ + R+ S EI + A + + ++ L +G G
Sbjct: 1115 EPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGTQ 1171
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ IA LV P I+ +DE TS LD + +V + + GRT + H+
Sbjct: 1172 -LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIVIAHR 1229
Query: 1028 PSIDIFESFDELLFMKRG 1045
S ++ D ++ ++ G
Sbjct: 1230 LS--TIQNADLIVVIQNG 1245
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
++IMK L DTLVG+ + +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 507 DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 343 YQIIKYLKHSTRALDGTTVI 362
+ L +A +G T I
Sbjct: 563 AVVQAALD---KAREGRTTI 579
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T VGD+ + +SGGQK+R+ LV +L +DE ++ LD+ + + + L +A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD---KA 1217
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+G T I ++ + D ++++ G++ G +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 97/211 (45%), Gaps = 14/211 (6%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---E 898
+Q+L + + G ALVG SG GK+T + ++ ++ ++G + I G R
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLM--QRLYDPLDGMVSIDGQDIRTINVR 460
Query: 899 TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
I G Q + T+ E++ + EIE + A + +++L
Sbjct: 461 YLREIIGVVSQEPVLF-ATTIAENIRYGREDVTMDEIEKAVKEANAYDF--IMKLPHQFD 517
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
L+G G LS Q++R+ IA LV NP I+ +DE TS LD + A+V + + G
Sbjct: 518 TLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAAL-DKAREG 575
Query: 1019 RTIVCTIHQPSI----DIFESFDELLFMKRG 1045
RT + H+ S D+ FD + +++G
Sbjct: 576 RTTIVIAHRLSTVRNADVIAGFDGGVIVEQG 606
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/198 (25%), Positives = 91/198 (45%), Gaps = 14/198 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS---GYCEQ 909
+ G ALVG SG GK+T++ +L + + G +++ G +Q + G Q
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL--ERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Query: 910 NDIHSPGLTVLESLLFSAWLRLPS--EIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
I ++ E++ + R+ S EI + A + + ++ L +G G
Sbjct: 1115 EPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFID--SLPDKYNTRVGDKGTQ 1171
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R+ IA LV P I+ +DE TS LD + +V + + GRT + H+
Sbjct: 1172 -LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL-DKAREGRTCIVIAHR 1229
Query: 1028 PSIDIFESFDELLFMKRG 1045
S ++ D ++ ++ G
Sbjct: 1230 LS--TIQNADLIVVIQNG 1245
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
++IMK L DTLVG+ + +SGGQK+R+ LV ++L +DE ++ LD+ +
Sbjct: 507 DFIMK---LPHQFDTLVGERGAQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562
Query: 343 YQIIKYLKHSTRALDGTTVI 362
+ L +A +G T I
Sbjct: 563 AVVQAALD---KAREGRTTI 579
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 52/101 (51%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+T VGD+ + +SGGQK+R+ LV +L +DE ++ LD+ + + + L +A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALD---KA 1217
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+G T I ++ + D ++++ G++ G +L
Sbjct: 1218 REGRTCI-VIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp-
Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ L V+ + G +T ++G +G+GK+TL++V+ G EG +Y +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 901 ARISGYCEQNDIHSPG----LTVLESLL---------------FSAWLRLPSEIELETQR 941
A + Y +P +TVLE+LL + W +P E E+ ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW--IPKEEEM-VEK 133
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
AF +++E ++L+ L G LS Q K + I L+ NP ++ MDEP +G+
Sbjct: 134 AF--KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAP 186
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A + V + G T + H+ +DI ++ + L++ G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 90/244 (36%), Gaps = 35/244 (14%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRT 210
LD +S + +TL++GP SGK G++ + P
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAEL 79
Query: 211 SAYVSQQDWQ----VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDI 266
Y + +Q + EMTV E L C G + L ++ I P E+ ++
Sbjct: 80 YHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESP----LNSLFYKKWI----PKEE-EM 130
Query: 267 FMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPAR 326
K+F I++ L L D G+ +SGGQ K + G L+ +
Sbjct: 131 VEKAFK------------ILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPK 173
Query: 327 VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
++ MDE G+ + I ++ G T + + D + ++ GQI
Sbjct: 174 MIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFNGQI 231
Query: 387 VYQG 390
+ +G
Sbjct: 232 IAEG 235
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 33/217 (15%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G +T ++G +G+GK+TL++V+ G EG +Y + A + Y +
Sbjct: 33 GDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEPAELYHYGIVRTFQT 90
Query: 915 PG----LTVLESLL---------------FSAWLRLPSEIELETQRAFVEEVMELVELTS 955
P +TVLE+LL + W +P E E+ ++AF +++E ++L+
Sbjct: 91 PQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKEEEM-VEKAF--KILEFLKLSH 145
Query: 956 LSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
L G LS Q K + I L+ NP ++ MDEP +G+ A + V +
Sbjct: 146 LYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G T + H+ +DI ++ + L++ G++I G
Sbjct: 201 AKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/211 (26%), Positives = 94/211 (44%), Gaps = 11/211 (5%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDV--LAGRKTGGIIEGDIYISGYPKRQET 899
+Q L NV+ G + ++G SGAGK+TL+ L R T EG + + G +
Sbjct: 41 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLS 96
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
+ ++ Q +L S + LP E++ + V EL+ L L
Sbjct: 97 ESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDK 156
Query: 960 LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-G 1018
P + LS Q++R+ IA L +NP ++ D+ TS LD ++ +++I G
Sbjct: 157 HDSYP--SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG 214
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049
TI+ H+ D+ + + + + GELI
Sbjct: 215 LTILLITHE--XDVVKRICDCVAVISNGELI 243
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 70/171 (40%), Gaps = 15/171 (8%)
Query: 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTT 360
D +SGGQK+R+ L +VL D+ ++ LD +TT I++ LK R L G T
Sbjct: 158 DSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRL-GLT 216
Query: 361 VISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVT 420
++ + + D V ++S G+++ Q V FS PK F+Q
Sbjct: 217 ILLITHEXDVVKRICDCVAVISNGELIEQDTVSEV--------FSHPKTPLAQKFIQSTL 268
Query: 421 SKKDQEQYWSN-PYLPYRYISPGKFAEAFHSYHTGKNLSEELAVPFDRRFN 470
E Y P+ P E TG+++ L RRFN
Sbjct: 269 HLDIPEDYQERLQAEPFTDCVPXLRLE-----FTGQSVDAPLLSETARRFN 314
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/197 (26%), Positives = 96/197 (48%), Gaps = 24/197 (12%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR----Q 897
+++L ++ + PG ALVG SG GK+T++ +L + + G+I+I G + +
Sbjct: 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALL--ERFYDTLGGEIFIDGSEIKTLNPE 1149
Query: 898 ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS 957
T ++I+ ++ + ++ E++++ PS + + A VEE L + +
Sbjct: 1150 HTRSQIAIVSQEPTLFD--CSIAENIIYGLD---PSSVTM----AQVEEAARLANIHNFI 1200
Query: 958 GAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
L +G G LS Q++R+ IA LV NP I+ +DE TS LD + +V
Sbjct: 1201 AELPEGFETRVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEA 1259
Query: 1011 VRNIVNTGRTIVCTIHQ 1027
+ + GRT + H+
Sbjct: 1260 L-DRAREGRTCIVIAHR 1275
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/184 (28%), Positives = 83/184 (45%), Gaps = 22/184 (11%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G ALVG SG GK+T++ +L + +++G I I G R + +N
Sbjct: 444 GQTVALVGSSGCGKSTIISLLL--RYYDVLKGKITIDGVDVRDINLE----FLRKN---- 493
Query: 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-GINGL---- 969
+ E LF+ + I L + EE++ ++ + + LP G N L
Sbjct: 494 VAVVSQEPALFNCTIE--ENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDR 551
Query: 970 ----STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
S Q++R+ IA LV NP I+ +DE TS LDA + IV + + GRT +
Sbjct: 552 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIA 610
Query: 1026 HQPS 1029
H+ S
Sbjct: 611 HRLS 614
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/267 (19%), Positives = 106/267 (39%), Gaps = 41/267 (15%)
Query: 132 EALLRQLRIYRGNRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQV 191
+ + + +R R ++ IL LS + P + L+GP GK +
Sbjct: 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDT---L 1132
Query: 192 SGKITYNGHGFKEFVPPRTSAYVS--QQDWQVAEMTVRETLDFAGQCQGVGSKYDMITEL 249
G+I +G K P T + ++ Q+ + + ++ E + + G+ + ++
Sbjct: 1133 GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIY-----GLDPSSVTMAQV 1187
Query: 250 ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309
++A I + + E L +T VGD + +SG
Sbjct: 1188 EEAARLANIH-------------------NFIAE-------LPEGFETRVGDRGTQ-LSG 1220
Query: 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369
GQK+R+ LV ++L +DE ++ LD+ + + + L RA +G T I +
Sbjct: 1221 GQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALD---RAREGRTCIVIAHRLN 1277
Query: 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396
D + ++S G I+ +G ++
Sbjct: 1278 TVMNA-DCIAVVSNGTIIEKGTHTQLM 1303
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
+TLVGD + +SGGQK+R+ LV ++L +DE ++ LD+ + + + L + +
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKG 603
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ L A D +I GQ+V G +++
Sbjct: 604 RTTIIIAHRLSTIRNA----DLIISCKNGQVVEVGDHRALM 640
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette
From An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/231 (24%), Positives = 105/231 (45%), Gaps = 33/231 (14%)
Query: 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETF 900
+ L V+ + G +T ++G +G+GK+TL++V+ G EG +Y +
Sbjct: 19 EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD--EGRVYFENKDITNKEP 76
Query: 901 ARISGYCEQNDIHSPG----LTVLESLL---------------FSAWLRLPSEIELETQR 941
A + Y +P +TVLE+LL + W +P E E+ ++
Sbjct: 77 AELYHYGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKW--IPKEEEM-VEK 133
Query: 942 AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001
AF +++E ++L+ L G LS Q K + I L+ NP ++ MD+P +G+
Sbjct: 134 AF--KILEFLKLSHLYDRKAG-----ELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAP 186
Query: 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
A + V + G T + H+ +DI ++ + L++ G++I G
Sbjct: 187 GLAHDIFNHVLELKAKGITFLIIEHR--LDIVLNYIDHLYVMFNGQIIAEG 235
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 88/181 (48%), Gaps = 13/181 (7%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCEQN 910
G +TALVG SG+GK+T++ +L + G I + G+ RQ ++I ++
Sbjct: 401 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 458
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING-- 968
+ S ++ E++ + A PS + E + E + + + + G G
Sbjct: 459 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 514
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +++ GRT++ H
Sbjct: 515 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHHL 573
Query: 1029 S 1029
S
Sbjct: 574 S 574
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKE 204
R ++ I D S I +T L+GP SGK SG I+ +GH ++
Sbjct: 385 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQ 441
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
P W +++ G S+ ++ + E IA D+
Sbjct: 442 LNPV----------WLRSKI-------------GTVSQEPILFSCSIAENIA-YGADDPS 477
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLV 322
+ + Q+ + V + I +T+VG+ KG+ SGGQK+R+ L+
Sbjct: 478 SVTAEEI----QRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALL 530
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
++L +DE ++ LD+ Y + + L R +DG TV+
Sbjct: 531 KNPKILLLDEATSALDAENEYLVQEALD---RLMDGRTVL 567
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 89/181 (49%), Gaps = 13/181 (7%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET----FARISGYCEQN 910
G +TALVG SG+GK+T++ +L + G I + G+ RQ ++I ++
Sbjct: 370 GSVTALVGPSGSGKSTVLSLLL--RLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEP 427
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGING-- 968
+ S ++ E++ + A PS + E + E + + + + G G
Sbjct: 428 ILFS--CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVL 483
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
LS Q++R+ IA L+ NP I+ +DE TS LDA +V + +++ GRT++ H+
Sbjct: 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRL 542
Query: 1029 S 1029
S
Sbjct: 543 S 543
Score = 44.3 bits (103), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 90/220 (40%), Gaps = 39/220 (17%)
Query: 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKE 204
R ++ I D S I +T L+GP SGK SG I+ +GH ++
Sbjct: 354 RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD---PASGTISLDGHDIRQ 410
Query: 205 FVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDL 264
P W +++ G S+ ++ + E IA D+
Sbjct: 411 LNPV----------WLRSKI-------------GTVSQEPILFSCSIAENIA-YGADDPS 446
Query: 265 DIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI--SGGQKKRLTTGELLV 322
+ + Q+ + V + I +T+VG+ KG+ SGGQK+R+ L+
Sbjct: 447 SVTAEEI----QRVAEVANAVAFIRNFPQGFNTVVGE---KGVLLSGGQKQRIAIARALL 499
Query: 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVI 362
++L +DE ++ LD+ Y + + L R +DG TV+
Sbjct: 500 KNPKILLLDEATSALDAENEYLVQEALD---RLMDGRTVL 536
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 15/206 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G ALVG SG+GK+T+ ++ + I EG+I + G+ R+ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGEILMDGHDLREYTLASLR 416
Query: 905 GYCE--QNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTSLSGALI 961
++H TV ++ ++ + E IE + A+ + + + L
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDF-----INKMDNGLD 471
Query: 962 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + R
Sbjct: 472 TVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNR 530
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRG 1045
T + H+ S E DE++ ++ G
Sbjct: 531 TSLVIAHRLS--TIEKADEIVVVEDG 554
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/107 (23%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350
+D DT++G+ + +SGGQ++R+ L+ + +L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTVIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 351 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
+ + L +A D+++++ +G IV +G +L+
Sbjct: 525 ELQKNRTSLVIAHRLSTIEKA----DEIVVVEDGVIVERGTHNDLLE 567
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance
Protein 2
Length = 260
Score = 53.1 bits (126), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/201 (27%), Positives = 94/201 (46%), Gaps = 27/201 (13%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G ALVG +G+GK+T+ +L EGDI I G ++ Y +N I S
Sbjct: 46 GTTCALVGHTGSGKSTIAKLLYRFYDA---EGDIKIGG--------KNVNKY-NRNSIRS 93
Query: 915 P-GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-------GI 966
G+ +++LF+ ++ I A EEV++ + L + LP G
Sbjct: 94 IIGIVPQDTILFNETIKY--NILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGN 151
Query: 967 NG--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCT 1024
G LS +R+R+ IA L+ +P IV DE TS LD++ + + V ++ RT++
Sbjct: 152 KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL-RKNRTLIII 210
Query: 1025 IHQPSIDIFESFDELLFMKRG 1045
H+ S S + ++ + +G
Sbjct: 211 AHRLS--TISSAESIILLNKG 229
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 54/101 (53%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT+VG++ +K +SGG+++R+ L+ +++ DE ++ LDS T Y K ++ +
Sbjct: 146 DTIVGNKGMK-LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKN 204
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ L A + +ILL++G+IV +G +L
Sbjct: 205 RTLIIIAHRLSTISSA----ESIILLNKGKIVEKGTHKDLL 241
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 15/206 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L N+ G ALVG SG+GK+T+ ++ + I EG I + G+ R+ T A +
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLIT--RFYDIDEGHILMDGHDLREYTLASLR 416
Query: 905 GYCE--QNDIHSPGLTVLESLLFSAWLRLPSE-IELETQRAFVEEVMELVELTSLSGALI 961
++H TV ++ ++ E IE + A+ + + + L
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDF-----INKMDNGLD 471
Query: 962 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ G NG LS QR+R+ IA L+ + I+ +DE TS LD + + + + R
Sbjct: 472 TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL-QKNR 530
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRG 1045
T + H+ S E DE++ ++ G
Sbjct: 531 TSLVIAHRLS--TIEQADEIVVVEDG 554
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/106 (23%), Positives = 53/106 (50%), Gaps = 5/106 (4%)
Query: 291 LDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK 350
+D DT++G+ + +SGGQ++R+ L+ + +L +DE ++ LD+ + I L
Sbjct: 466 MDNGLDTIIGENGVL-LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 351 HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
+ + L +A D+++++ +G IV +G +L
Sbjct: 525 ELQKNRTSLVIAHRLSTIEQA----DEIVVVEDGIIVERGTHSELL 566
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 90/203 (44%), Gaps = 23/203 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISG------YPKRQETFARI 903
+ G L+G SG GKTT + ++AG + G I GD ++ P + A +
Sbjct: 27 KDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMV 86
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
Q+ P +TV +++ F LR E++ + V EV EL+ LT L L
Sbjct: 87 F----QSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR---VREVAELLGLTEL---LNRK 136
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIV 1022
P LS QR+R+ + +V P + MDEP S LDA+ + ++ + G T +
Sbjct: 137 P--RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 1023 CTIHQPSIDIFESFDELLFMKRG 1045
H ++ D + M RG
Sbjct: 195 YVTHD-QVEAMTMGDRIAVMNRG 216
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 1/78 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ G +V +V MDE + LD+ ++ LK R L G T I +
Sbjct: 140 LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQL-GVTTIYVTH 198
Query: 367 PAPEAYELFDDVILLSEG 384
EA + D + +++ G
Sbjct: 199 DQVEAMTMGDRIAVMNRG 216
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 16/213 (7%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L +V+ + G ALVG SG+GK+T+ ++ + + G I + G+ R +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFT--RFYDVDSGSICLDGHDVRDYKLTNLR 416
Query: 905 GY---CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
+ QN +H T+ ++ ++A E ++E Q A ME +E ++ L
Sbjct: 417 RHFALVSQN-VHLFNDTIANNIAYAAEGEYTRE-QIE-QAARQAHAMEFIE--NMPQGLD 471
Query: 962 GLPGING--LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+ G NG LS QR+R+ IA L+ + ++ +DE TS LD + + + + +
Sbjct: 472 TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL-QKNK 530
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
T++ H+ S E DE+L + GE+I G
Sbjct: 531 TVLVIAHRLS--TIEQADEILVVDE-GEIIERG 560
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 5/101 (4%)
Query: 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA 355
DT++G E +SGGQ++R+ L+ A VL +DE ++ LD+ + I L
Sbjct: 471 DTVIG-ENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE---- 525
Query: 356 LDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
L + ++ E D+++++ EG+I+ +G +L
Sbjct: 526 LQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL 566
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/217 (27%), Positives = 96/217 (44%), Gaps = 29/217 (13%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 900 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 959 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ G P N LS QR+ + +A L+ P ++ +D+ TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQR 197
Query: 1010 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ RT++ HQ + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITHQ--LSLAERAHHILFLKEG 232
Score = 37.7 bits (86), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 95/260 (36%), Gaps = 48/260 (18%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 203
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 204 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
+ + F+ F G DT VG E +SGGQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLSGGQRQAVAL 167
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
L+ R+L +D+ ++ LD+ ++ + L S T ++ Q + E
Sbjct: 168 ARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLS--LAERAHH 225
Query: 378 VILLSEGQIVYQGPRVSVLD 397
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/205 (27%), Positives = 90/205 (43%), Gaps = 11/205 (5%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCE-QN 910
G + AL+G +GAGK+TL +LAG + G+I + G + + AR + Q
Sbjct: 29 GEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQY 88
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS--LSGALIGLPGING 968
+ PG+T+ L + +L E+ + V++ +EL++ LS L G
Sbjct: 89 PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EG 143
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028
S ++KR I LV P+ +DE SGLD A +V R V + + H
Sbjct: 144 FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQ 203
Query: 1029 SIDIFESFDELLFMKRGGELIYAGP 1053
I + D++ M G + GP
Sbjct: 204 RILNYIQPDKVHVMMDGRVVATGGP 228
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 96/215 (44%), Gaps = 24/215 (11%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQET 899
D + L +V+ PG ALVG SGAGK+T++ +L + I G I I G Q T
Sbjct: 65 DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLF--RFYDISSGCIRIDGQDISQVT 122
Query: 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA 959
A + + G+ +++LF+ + I A +EV + + A
Sbjct: 123 QASLRSHI--------GVVPQDTVLFNDTI--ADNIRYGRVTAGNDEVEAAAQAAGIHDA 172
Query: 960 LIGLP-------GINGL--STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
++ P G GL S +++R+ IA ++ P I+ +DE TS LD + +
Sbjct: 173 IMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQAS 232
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ + RT + H+ S + + D++L +K G
Sbjct: 233 LAKVC-ANRTTIVVAHRLSTVV--NADQILVIKDG 264
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 47/100 (47%), Gaps = 5/100 (5%)
Query: 297 TLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
T VG+ LK +SGG+K+R+ ++ ++ +DE ++ LD+S I L
Sbjct: 182 TQVGERGLK-LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR 240
Query: 357 DGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVL 396
V L A D ++++ +G IV +G ++L
Sbjct: 241 TTIVVAHRLSTVVNA----DQILVIKDGCIVERGRHEALL 276
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 21/213 (9%)
Query: 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA--- 901
V+ R G + L+G SG+GKTT++ ++AG R T +GD++I G KR
Sbjct: 33 GVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT----KGDVWIGG--KRVTDLPPQK 86
Query: 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
R G QN +TV +++ F + + E++ A V E++ + L S +
Sbjct: 87 RNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD---ARVRELLRFMRLESYANRF- 142
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRT 1020
+ LS Q++R+ +A L P ++ DEP + +D + + VR + + G T
Sbjct: 143 ----PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVT 198
Query: 1021 IVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
V H + E D +L + G + P
Sbjct: 199 SVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 51/105 (48%), Gaps = 6/105 (5%)
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
V +++ + L++ A+ + +SGGQ++R+ L +VL DE +D+
Sbjct: 126 VRELLRFMRLESYANRFPHE-----LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 342 TYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386
++ +++ + G T + + EA E+ D V++L EG +
Sbjct: 181 RRELRTFVRQVHDEM-GVTSVFVTHDQEEALEVADRVLVLHEGNV 224
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 49.7 bits (117), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 17/219 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQ 897
D L + + G +TA++G +G GK+TL G + + G I D Y ++
Sbjct: 19 DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKG 78
Query: 898 ETFARIS-GYCEQN-DIHSPGLTVLESLLFSAW-LRLPSEIELETQRAFVEEVMELVELT 954
R S G Q+ D +V + + F A ++LP + R V+ ++ +
Sbjct: 79 IMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPED----EIRKRVDNALKRTGIE 134
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014
L + LS Q+KR+ IA LV P ++ +DEPT+GLD + +M+ + +
Sbjct: 135 HLKDK-----PTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEM 189
Query: 1015 VNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
G TI+ H IDI + + +F+ + G +I G
Sbjct: 190 QKELGITIIIATH--DIDIVPLYCDNVFVMKEGRVILQG 226
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 44/84 (52%), Gaps = 1/84 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+S GQKKR+ +LV +VL +DE + GLD +I+K L + L G T+I
Sbjct: 144 LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATH 202
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
D+V ++ EG+++ QG
Sbjct: 203 DIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes
Domain)
Length = 538
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 28/191 (14%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQETF 900
QL+V+ G + G + ++G +G GKTT +L G T G + + I Y K Q F
Sbjct: 283 QLVVD-NGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSY-KPQRIF 340
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
G +Q +L S+ L T F EEV + + L L +
Sbjct: 341 PNYDGTVQQ------------------YLENASKDALSTSSWFFEEVTKRLNLHRLLES- 381
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020
+N LS + ++L IA L + +D+P+S LD IV + ++ + +
Sbjct: 382 ----NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKA 437
Query: 1021 IVCTI-HQPSI 1030
+ I H SI
Sbjct: 438 VTFIIDHDLSI 448
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 81/180 (45%), Gaps = 18/180 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG---YCEQ 909
+ + ++G +G GKTT++ +LAG + + + + E R G Y
Sbjct: 23 KNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG----KDEVLKRFRGKEIYNYF 78
Query: 910 NDIHSPGLTVLESLLF----SAWLR-LPSEIELE-TQRAFVEEVMELVELTSLSGALIGL 963
+++S L ++ + + S +L+ +EI + +R +EV EL+ +T+L +
Sbjct: 79 KELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELLNMTNLWNKDANI 138
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC 1023
GL +RL +A L+ + D+P+S LD R + + +R ++ IV
Sbjct: 139 LSGGGL-----QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVV 193
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364
+ SGGQK+RL+ LV +VL +D+ ++ +D T +I+ LK T+ G T +
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK---GCTTFII 534
Query: 365 LQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
Q P A L D +++L EG++ G +L+
Sbjct: 535 TQKIPTAL-LADKILVLHEGKVAGFGTHKELLE 566
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 91/202 (45%), Gaps = 25/202 (12%)
Query: 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKR 896
E+ +L V + +PG L A++G +G+GK+TLM+++ G +E D K
Sbjct: 353 ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL 412
Query: 897 QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL 956
++ IS + E++LFS ++ ++ + A +E++E ++ +
Sbjct: 413 KDLRGHISAVPQ------------ETVLFSGTIK--ENLKWGREDATDDEIVEAAKIAQI 458
Query: 957 SGALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
+I LP G S Q++RL+IA LV P ++ +D+ TS +D +
Sbjct: 459 HDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRI 518
Query: 1008 MRTVRNIVNTGRTIVCTIHQPS 1029
+ ++ T + T P+
Sbjct: 519 LDGLKRYTKGCTTFIITQKIPT 540
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS Q++R++IA L P ++ DEPTS LD V+R ++ + G+T+V H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 10/111 (9%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R++ L VL DE ++ LD ++++ ++ A +G T++ +
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ--QLAEEGKTMVVVTH 211
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQ 417
A + VI L +G+I +G V F P+ + FL+
Sbjct: 212 EMGFARHVSSHVIFLHQGKIEEEGDPEQV--------FGNPQSPRLQQFLK 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 58/217 (26%), Positives = 93/217 (42%), Gaps = 31/217 (14%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFA 901
+L +T RPG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG----GQLLLDGKPLPQY--- 84
Query: 902 RISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
E +H V E +F L+ L TQ+ +EE+ + +
Sbjct: 85 ------EHRYLHRQVAAVGQEPQVFGRSLQENIAYGL-TQKPTMEEITAAAVKSGAHSFI 137
Query: 961 IGLPGINGLSTE-----------QRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
GLP G TE QR+ + +A L+ P ++ +D+ TS LDA + V +
Sbjct: 138 SGLP--QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQ 195
Query: 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046
+ V I Q + + E D +LF++ G
Sbjct: 196 LLYESPERYSRSVLLITQ-HLSLVEQADHILFLEGGA 231
Score = 38.5 bits (88), Expect = 0.019, Method: Composition-based stats.
Identities = 58/255 (22%), Positives = 99/255 (38%), Gaps = 53/255 (20%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 203
NR + +L L+ +RP +T L+GP SGK G++ +G
Sbjct: 26 NRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLP 82
Query: 204 EF---VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKP 260
++ R A V Q+ QV +++E + + +T+ E+I
Sbjct: 83 QYEHRYLHRQVAAVGQEP-QVFGRSLQENIAYG------------LTQKPTMEEITAAAV 129
Query: 261 DEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL 320
F I GL DT V DE +SGGQ++ +
Sbjct: 130 KSGAHSF--------------------ISGLPQGYDTEV-DEAGSQLSGGQRQAVALARA 168
Query: 321 LVGPARVLFMDEISNGLDSSTTYQIIKYL-----KHSTRALDGTTVISLLQPAPEAYELF 375
L+ VL +D+ ++ LD+++ Q+ + L ++S L T +SL++ A
Sbjct: 169 LIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQA------- 221
Query: 376 DDVILLSEGQIVYQG 390
D IL EG + +G
Sbjct: 222 -DHILFLEGGAIREG 235
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 81/189 (42%), Gaps = 17/189 (8%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912
RPG + LVG +G GK+T + +LAG++ + D P+ QE G QN
Sbjct: 101 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD----DPPEWQEIIKYFRGSELQNYF 156
Query: 913 HSPGLTVLESLLFSAWL-RLPSEIELETQRA----------FVEEVMELVELTSLSGALI 961
+++++ ++ +P I+ Q+ E+V +++ L L
Sbjct: 157 TKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLK 216
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTI 1021
I LS + +R I + V + DEP+S LD + + +R+++ + +
Sbjct: 217 R--DIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYV 274
Query: 1022 VCTIHQPSI 1030
+C H S+
Sbjct: 275 ICVEHDLSV 283
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 91/210 (43%), Gaps = 17/210 (8%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET 899
+ L NV+ G + G +G+GK+TL+ ++AG +IE GD+ G K+
Sbjct: 21 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 75
Query: 900 FARISGYCEQ-NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R G Q + V + + F+ P + V++ ME V L
Sbjct: 76 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV----PLVKKAMEFVGL-DFDS 130
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+P LS +++R+ IA +V P I+ +DEP GLD ++R V G
Sbjct: 131 FKDRVPFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 188
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGEL 1048
+T++ H + D ++ +++G ++
Sbjct: 189 KTVILISHDIET-VINHVDRVVVLEKGKKV 217
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340
+V+ M+ +GLD + D + +SGG+K+R+ ++V +L +DE GLD
Sbjct: 116 LVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 172
Query: 341 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD--- 397
+++ ++ G TVI + D V++L +G+ V+ G R+ L+
Sbjct: 173 GKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 230
Query: 398 --FFAS 401
FF S
Sbjct: 231 PRFFTS 236
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 900 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 959 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ G P N LS QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1010 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ RT++ Q + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 52/260 (20%), Positives = 95/260 (36%), Gaps = 48/260 (18%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 203
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 204 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
+ + F+ F G DT VG E +SGGQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLSGGQRQAVAL 167
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
L+ R+L +D ++ LD+ ++ + L S TV+ + Q A E
Sbjct: 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLA-ERAHH 225
Query: 378 VILLSEGQIVYQGPRVSVLD 397
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/245 (24%), Positives = 103/245 (42%), Gaps = 30/245 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGYPKRQET 899
+ L NV+ G + G +G+GK+TL+ ++AG +IE GD+ G K+
Sbjct: 23 KALENVSLVINEGECLLVAGNTGSGKSTLLQIVAG-----LIEPTSGDVLYDGERKKGYE 77
Query: 900 FARISGYCEQ-NDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
R G Q + V + + F+ P + V++ ME V L
Sbjct: 78 IRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV----PLVKKAMEFVGL-DFDS 132
Query: 959 ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
+P LS +++R+ IA +V P I+ +DEP GLD ++R V G
Sbjct: 133 FKDRVPFF--LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLG 190
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMFKSPRIF 1078
+T++ H + D ++ +++G ++ G++ L KY PR F
Sbjct: 191 KTVILISHDIET-VINHVDRVVVLEKGKKVFD----GTRMEFLEKY---------DPRFF 236
Query: 1079 YCQIL 1083
++L
Sbjct: 237 TSKML 241
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 10/126 (7%)
Query: 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340
+V+ M+ +GLD + D + +SGG+K+R+ ++V +L +DE GLD
Sbjct: 118 LVKKAMEFVGLDFDS---FKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDRE 174
Query: 341 TTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD--- 397
+++ ++ G TVI + D V++L +G+ V+ G R+ L+
Sbjct: 175 GKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEKYD 232
Query: 398 --FFAS 401
FF S
Sbjct: 233 PRFFTS 238
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 89/196 (45%), Gaps = 25/196 (12%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----EGDIYISG----YP 894
++L ++ + + G +++G SG+GK+TL+ +L G++ EG +++ G Y
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYIL------GLLDAPTEGKVFLEGKEVDYT 71
Query: 895 KRQETF---ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELV 951
+E R G+ Q P LT LE+++ + E + + ++ L
Sbjct: 72 NEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYL-----LS 126
Query: 952 ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
EL L L P LS +++R+ IA L P ++F DEPT LD+ VM
Sbjct: 127 EL-GLGDKLSRKP--YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIF 183
Query: 1012 RNIVNTGRTIVCTIHQ 1027
I G +IV H+
Sbjct: 184 LKINEGGTSIVMVTHE 199
Score = 37.7 bits (86), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 16/115 (13%)
Query: 283 EYIMKILGLDTCADTLVGDEMLKG---ISGGQKKRLTTGELLVGPARVLFMDEISNGLDS 339
EY++ LGL GD++ + +SGG+++R+ L +LF DE + LDS
Sbjct: 122 EYLLSELGL--------GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDS 173
Query: 340 STTYQIIK-YLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRV 393
+ T +++ +LK + +G T I ++ E EL + + +G++V + RV
Sbjct: 174 ANTKRVMDIFLKIN----EGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITRV 224
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 86/191 (45%), Gaps = 21/191 (10%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIE--GDIYISGYPKRQETFARISGY 906
PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+ + +
Sbjct: 25 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 84
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 964
Q + PG++ + L +A + S ET F + +L AL+ +P
Sbjct: 85 --QYPVEIPGVSN-QFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 136
Query: 965 ----GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+N G S ++KR I V P + +DE SGLD A +V V ++ + R
Sbjct: 137 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 196
Query: 1020 TIVCTIHQPSI 1030
+ + H I
Sbjct: 197 SFIIVTHYQRI 207
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 29/217 (13%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQET 899
+Q+L +T PG +TALVG +G+GK+T+ +L + TG G + + G P Q
Sbjct: 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG----GKVLLDGEPLVQ-- 85
Query: 900 FARISGYCEQNDIHSPGLTV-LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG 958
+ + +H+ V E LLF R L T+ +EE+ + +
Sbjct: 86 -------YDHHYLHTQVAAVGQEPLLFGRSFRENIAYGL-TRTPTMEEITAVAMESGAHD 137
Query: 959 ALIGLP---------GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ G P N L+ QR+ + +A L+ P ++ +D TS LDA V R
Sbjct: 138 FISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQR 197
Query: 1010 TVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG 1045
+ RT++ Q + + E +LF+K G
Sbjct: 198 LLYESPEWASRTVLLITQQ--LSLAERAHHILFLKEG 232
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 48/260 (18%)
Query: 144 NRSKLTILDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFK 203
N + +L L+ + P ++T L+GP SGK GK+ +G
Sbjct: 28 NHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP---TGGKVLLDGEPLV 84
Query: 204 EFVPPRTSAYVSQQDWQVAE------MTVRETLDFAGQCQGVGSKYDMITELARREKIAG 257
++ Y+ Q V + + RE + + +T E+I
Sbjct: 85 QY----DHHYLHTQVAAVGQEPLLFGRSFRENIAYG------------LTRTPTMEEITA 128
Query: 258 IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317
+ + F+ F G DT VG E ++ GQ++ +
Sbjct: 129 VAMESGAHDFISGFPQG--------------------YDTEVG-ETGNQLAVGQRQAVAL 167
Query: 318 GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377
L+ R+L +D ++ LD+ ++ + L S TV+ + Q A E
Sbjct: 168 ARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPE-WASRTVLLITQQLSLA-ERAHH 225
Query: 378 VILLSEGQIVYQGPRVSVLD 397
++ L EG + QG + +++
Sbjct: 226 ILFLKEGSVCEQGTHLQLME 245
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 19/177 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS 914
G + A++G +G GK+TL+D+L G I+G I E + I G+ Q
Sbjct: 31 GDILAVLGQNGCGKSTLLDLLLGIHRP--IQGKI---------EVYQSI-GFVPQFFSSP 78
Query: 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVE-EVMELVELTSLSGALIGLPGINGLSTEQ 973
+VL+ +L + + + ++ V + ++ + LT L+ LS Q
Sbjct: 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKR-----EFTSLSGGQ 133
Query: 974 RKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029
R+ + IA + + ++ +DEPTS LD IV+ + ++ + T+V T HQP+
Sbjct: 134 RQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN 190
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/85 (20%), Positives = 39/85 (45%)
Query: 283 EYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT 342
+Y + + LD T + +SGGQ++ + + +++ +DE ++ LD +
Sbjct: 105 DYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 343 YQIIKYLKHSTRALDGTTVISLLQP 367
++ L ++ + T V + QP
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQP 189
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron-
Sulfur Cluster Biosynthesis
Length = 267
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/187 (27%), Positives = 85/187 (45%), Gaps = 21/187 (11%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRK----TGGIIE--GDIYISGYPKRQETFARISGY 906
PG + A++G +G+GK+TL LAGR+ TGG +E G ++ P+ + +
Sbjct: 44 HPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAF 103
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLP-- 964
Q + PG++ + L +A + S ET F + +L AL+ +P
Sbjct: 104 --QYPVEIPGVSN-QFFLQTALNAVRSYRGQETLDRF-----DFQDLMEEKIALLKMPED 155
Query: 965 ----GIN-GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGR 1019
+N G S ++KR I V P + +DE SGLD A +V V ++ + R
Sbjct: 156 LLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKR 215
Query: 1020 TIVCTIH 1026
+ + H
Sbjct: 216 SFIIVTH 222
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 22/192 (11%)
Query: 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETF 900
++L ++ G + L+G +GAGKTT + +++ + + GI+ ++ +
Sbjct: 29 EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV--TVFGKNVVEEPHEV 86
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSG 958
++ Y + + +E L F A + SEIE +RA T ++G
Sbjct: 87 RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----------TEIAG 135
Query: 959 ALIGLPGINGLSTEQR---KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
+G + +ST + ++L IA L+ NP + +DEPTSGLD A V + ++
Sbjct: 136 --LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 1016 NTGRTIVCTIHQ 1027
G TI+ + H
Sbjct: 194 QEGLTILVSSHN 205
Score = 33.1 bits (74), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368
G +K L L+V P R+ +DE ++GLD ++ K LK +++ +G T++
Sbjct: 150 GMVRKLLIARALMVNP-RLAILDEPTSGLDVLNAREVRKILKQASQ--EGLTILVSSHNM 206
Query: 369 PEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEV 419
E L D + L+ G IV G + + + K +N+ + +EV
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERY--------KAQNIEEVFEEV 249
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 46.6 bits (109), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 44/299 (14%)
Query: 778 RRKGENVVIELREY---LQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQ 834
R GE ++I+ Y +Q +S K PF +S+ V++P +L +
Sbjct: 47 RMGGEAIIIDEENYKPIIQEASCTGCGICVHK---CPFNAISI--------VNLPEQLDE 95
Query: 835 EGVLEDRLQLLVNVTGAFR-----PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--- 886
+ V + VN +R G++ +VG +G GKTT + +LAG+ + E
Sbjct: 96 DCVH----RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 887 -DIYISGY--PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF 943
D I + + Q F R+ E + P L LP ++ + +
Sbjct: 152 WDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVDL----------LPKAVKGKVRELL 200
Query: 944 --VEEVMELVELTSLSGALIGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
V+EV + E+ L ++ LS + +R+ IA L+ F DEP+S LD
Sbjct: 201 KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 260
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSI-DIFESFDELLFMKRGGELIYAGPLGSKS 1058
R V R +R + N G+ ++ H ++ D +++ + G I++ P G+++
Sbjct: 261 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 319
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 31/234 (13%)
Query: 812 FQPLSMAFGNINYFVDVPVE--LKQEGVLEDRLQLLVNVT-GAFRPGVLTALVGVSGAGK 868
F+P + F ++ VDV E ++ +++D + V G R G + +VG +G GK
Sbjct: 336 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 395
Query: 869 TTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 926
TT + +LAG T G +E D+ ++ P+ + + Y + I S + L S +
Sbjct: 396 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDS---SKLNSNFYK 452
Query: 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986
L P + +++L + + LS + +R+ IA L+ +
Sbjct: 453 TELLKP---------------LGIIDLYDRN--------VEDLSGGELQRVAIAATLLRD 489
Query: 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1040
I +DEP++ LD V R +R+++ + + I D L+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 543
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 69/162 (42%), Gaps = 27/162 (16%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY------------PKRQETF 900
+ G L+G SG GKTT + +AG + G IYI PK ++
Sbjct: 30 KDGEFLVLLGPSGCGKTTTLRXIAGLEEP--TRGQIYIEDNLVADPEKGVFVPPKERDVA 87
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL 960
Y P TV +++ F LR + E++ + V EV E + LT L L
Sbjct: 88 XVFQSYA-----LYPHXTVYDNIAFPLKLRKVPKQEIDKR---VREVAEXLGLTEL---L 136
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
P LS QR+R+ + ++ P + DEP S LDA+
Sbjct: 137 NRKP--RELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAK 176
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGGQ++R+ G ++ +V DE + LD+ + LK R L G T I +
Sbjct: 143 LSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQL-GVTTIYVTH 201
Query: 367 PAPEAYELFDDVILLSEGQIVYQG 390
EA D + + ++G++ G
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVG 225
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/299 (23%), Positives = 126/299 (42%), Gaps = 44/299 (14%)
Query: 778 RRKGENVVIELREY---LQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQ 834
R GE ++I+ Y +Q +S K PF +S+ V++P +L +
Sbjct: 33 RMGGEAIIIDEENYKPIIQEASCTGCGICVHK---CPFNAISI--------VNLPEQLDE 81
Query: 835 EGVLEDRLQLLVNVTGAFR-----PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--- 886
+ V + VN +R G++ +VG +G GKTT + +LAG+ + E
Sbjct: 82 DCVH----RYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDS 137
Query: 887 -DIYISGY--PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAF 943
D I + + Q F R+ E + P L LP ++ + +
Sbjct: 138 WDNVIRAFRGNELQNYFERLKN-GEIRPVVKPQYVDL----------LPKAVKGKVRELL 186
Query: 944 --VEEVMELVELTSLSGALIGLP-GINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
V+EV + E+ L ++ LS + +R+ IA L+ F DEP+S LD
Sbjct: 187 KKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLD 246
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSI-DIFESFDELLFMKRGGELIYAGPLGSKS 1058
R V R +R + N G+ ++ H ++ D +++ + G I++ P G+++
Sbjct: 247 IRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN 305
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 99/234 (42%), Gaps = 31/234 (13%)
Query: 812 FQPLSMAFGNINYFVDVPVE--LKQEGVLEDRLQLLVNVT-GAFRPGVLTALVGVSGAGK 868
F+P + F ++ VDV E ++ +++D + V G R G + +VG +G GK
Sbjct: 322 FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGK 381
Query: 869 TTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFS 926
TT + +LAG T G +E D+ ++ P+ + + Y + I S + L S +
Sbjct: 382 TTFVKMLAGVEEPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDS---SKLNSNFYK 438
Query: 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986
L P + +++L + + LS + +R+ IA L+ +
Sbjct: 439 TELLKP---------------LGIIDLYDRN--------VEDLSGGELQRVAIAATLLRD 475
Query: 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELL 1040
I +DEP++ LD V R +R+++ + + I D L+
Sbjct: 476 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLI 529
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGII------EGDIYISGYPKRQETFARISGY 906
+ G + +VG +G GK+T + +LAG+ + +G I + Q F ++
Sbjct: 45 KEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNG 104
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGI 966
+ + + ++ + + L ++ + +EEV++ +EL ++ I
Sbjct: 105 EIRPVVKPQYVDLIPKAVKGKVIEL---LKKADETGKLEEVVKALELENVLER-----EI 156
Query: 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS + +R+ IA L+ N + F DEP+S LD R R +R + G++++ H
Sbjct: 157 QHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEH 216
Query: 1027 QPSI-DIFESFDELLFMKRGGELIYAGPLGSKSC--ELIK-YFEVESFMFKSPRIFYCQ 1081
++ D +++ + G I++ P G+++ E ++ Y + E+ F+ I + +
Sbjct: 217 DLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTK 275
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 75/185 (40%), Gaps = 28/185 (15%)
Query: 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYC 907
G + G + +VG +G GKTT + LAG T G IE D+ ++ P+ + + Y
Sbjct: 307 GEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE 366
Query: 908 EQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGIN 967
+ I + + L S + L P + +++L +N
Sbjct: 367 LLSKIDA---SKLNSNFYKTELLKP---------------LGIIDLYDRE--------VN 400
Query: 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027
LS + +R+ IA L+ + I +DEP++ LD V R +R++ +
Sbjct: 401 ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEH 460
Query: 1028 PSIDI 1032
+ I
Sbjct: 461 DVLXI 465
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 76/170 (44%), Gaps = 23/170 (13%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARIS 904
L +T + G L A+VG G GK++L+ L +EG + I G A I
Sbjct: 21 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDK--VEGHVAIKGSVAYVPQQAWI- 77
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-SG--ALI 961
QND ++ E++LF L P R+ ++ L +L L SG I
Sbjct: 78 ----QND------SLRENILFGCQLEEP------YYRSVIQACALLPDLEILPSGDRTEI 121
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011
G G+N LS Q++R+++A + +N I D+P S +DA + V
Sbjct: 122 GEKGVN-LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENV 170
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 86/182 (47%), Gaps = 21/182 (11%)
Query: 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK--TGGIIE-- 885
++L Q G + +L ++ G L G++GAGKTTL+++L + T G +
Sbjct: 22 IQLDQIGRXKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 886 ----GDIYISGYPKRQETFARISGYCEQNDIH--SPGLTVLESLLFSAWLRLPSEIELET 939
G + S RQ G+ + + G V++ ++ A+ + +++
Sbjct: 82 GKXPGKVGYSAETVRQHI-----GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDD 136
Query: 940 Q-RAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998
+ R ++++LV ++ + IG LST +++R+ IA L P ++ +DEP +G
Sbjct: 137 EIRNEAHQLLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAG 191
Query: 999 LD 1000
LD
Sbjct: 192 LD 193
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Query: 285 IMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQ 344
++K++G A +G +S G+K+R+ L G +VL +DE + GLD
Sbjct: 145 LLKLVGXSAKAQQYIGY-----LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 345 IIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGF 404
++ L + + I + E F ++LL +GQ + QG +V D S
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQG---AVEDILTSENX 256
Query: 405 SCPKRKNVA 413
S +KNVA
Sbjct: 257 SRFFQKNVA 265
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/174 (28%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAG---RKTGGIIEGDIYISGYPKRQETFARISGYCEQND 911
G + L+G +GAGKTT + +AG + G II I+ P I+ E
Sbjct: 32 GQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPEGRR 91
Query: 912 IHSPGLTVLESLLFSAWLRLPSE---IELETQRAFVEEVMELVELTSLSGALIGLPGING 968
I P LTV E+L A+ R E +LE + + E L L G L G
Sbjct: 92 IF-PELTVYENLXXGAYNRKDKEGIKRDLEWIFSLFPRLKE--RLKQLGGTLSG------ 142
Query: 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIV 1022
+++ L I L + P ++ DEP+ GL + V ++ I G TI+
Sbjct: 143 ---GEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Score = 37.7 bits (86), Expect = 0.032, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 48/94 (51%), Gaps = 8/94 (8%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDS---STTYQIIKYLKHSTRALDGTTVIS 363
+SGG+++ L G L ++L DE S GL S +++I+ + +GTT++
Sbjct: 140 LSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQ-----EGTTILL 194
Query: 364 LLQPAPEAYELFDDVILLSEGQIVYQGPRVSVLD 397
+ Q A A ++ +L GQIV +G +LD
Sbjct: 195 VEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/224 (26%), Positives = 102/224 (45%), Gaps = 33/224 (14%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISG---------YP 894
+L +++ + PG + ++G SG GKTTL+ LAG + G+I +SG P
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD--SGEISLSGKTIFSKNTNLP 76
Query: 895 KRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT 954
R+ R GY Q + P LTV ++ + + +R +E ++EL ++
Sbjct: 77 VRE----RRLGYLVQEGVLFPHLTVYRNIAYGLG---NGKGRTAQERQRIEAMLELTGIS 129
Query: 955 SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN- 1013
L+G + LS Q++R +A L +P ++ +DEP S LD + + R +R
Sbjct: 130 ELAGRY-----PHELSGGQQQRAALARALAPDPELILLDEPFSALDEQ----LRRQIRED 180
Query: 1014 ----IVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053
+ G++ V H + + D + MK+G L A P
Sbjct: 181 MIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTASP 223
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
++G R G + LVG +GAGK+TL+ +AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 908 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 966 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
N LS + +R+ +A ++ ANP+ ++ +D+P + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILSALSQQG 183
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
IV + H + + + L +GG+++ +G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 44.3 bits (103), Expect = 3e-04, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
++G R G + LVG +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 908 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 966 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALCQQG 183
Query: 1019 RTIVCTIH 1026
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 48/214 (22%), Positives = 97/214 (45%), Gaps = 26/214 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
++G R G + LVG +GAGK+TL+ +AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 908 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 966 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
N LS + +R+ +A ++ ANP+ ++ +D+P LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILSALSQQG 183
Query: 1019 RTIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052
IV + H + + + L +GG+++ +G
Sbjct: 184 LAIVMSSHDLNHTLRHAHRAWLL--KGGKMLASG 215
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 45/188 (23%), Positives = 85/188 (45%), Gaps = 24/188 (12%)
Query: 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYC 907
++G R G + LVG +GAGK+TL+ AG +G +G I +G P + +++
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLARXAGXTSG---KGSIQFAGQPLEAWSATKLA--- 72
Query: 908 EQNDIHSPGLTVLESLLFSA--WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPG 965
+H L+ ++ F+ W L +T+ + +V + L G
Sbjct: 73 ----LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGR-----S 123
Query: 966 INGLSTEQRKRLTIAVELV-----ANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTG 1018
N LS + +R+ +A ++ ANP+ ++ +DEP + LD + + + + + G
Sbjct: 124 TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILSALSQQG 183
Query: 1019 RTIVCTIH 1026
IV + H
Sbjct: 184 LAIVXSSH 191
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 34/232 (14%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIE---GDIYISGY------PKRQETFARISGYCEQN 910
L+G +GAGK+ ++++AG I++ G++ ++G P+R R G+ Q+
Sbjct: 29 LLGPTGAGKSVFLELIAG-----IVKPDRGEVRLNGADITPLPPER-----RGIGFVPQD 78
Query: 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLS 970
P L+V ++ + LR +E + + + E + + L A LS
Sbjct: 79 YALFPHLSVYRNIAYG--LRNVERVERDRRVREMAEKLGIAHLLDRKPAR--------LS 128
Query: 971 TEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
+R+R+ +A LV P ++ +DEP S +D + ++M +R + + + I
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 1031 DIFESFDELLFMKRGGELIYAGPL----GSKSCELIKYFEVESFMFKSPRIF 1078
+ DE+ M G ++ G L +K+ E+ ++ + + K +I
Sbjct: 189 EAAMLADEVAVM-LNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKVSKIL 239
Score = 39.3 bits (90), Expect = 0.012, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 10/110 (9%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+SGG+++R+ LV R+L +DE + +D T +++ L+ R D ++ +
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFD-VPILHVTH 185
Query: 367 PAPEAYELFDDVILLSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFL 416
EA L D+V ++ G+IV +G + + F++ K VA+FL
Sbjct: 186 DLIEAAMLADEVAVMLNGRIVEKG---KLKELFSA------KNGEVAEFL 226
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 28/166 (16%)
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAG---RKTGGII-EGDIYISGYPKRQETF 900
L N++ G ++G +GAGKT ++++AG +G I+ +G P++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDI- 74
Query: 901 ARISGYCEQNDIHSPGLTVLESLLFSAWLRL---PSEIELETQRAF-VEEVMELVELTSL 956
+ QN P + V ++L F ++ P + L+T R +E +++ LT
Sbjct: 75 ----AFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRV-LDTARDLKIEHLLDRNPLT-- 127
Query: 957 SGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002
LS +++R+ +A LV NP I+ +DEP S LD R
Sbjct: 128 ------------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 91/243 (37%), Gaps = 51/243 (20%)
Query: 151 LDDLSGIIRPSRLTLLLGPPSSGKXXXXXXXXXXXXXXXQVSGKITYNGHGFKEFVPPRT 210
LD+LS + ++LGP +GK SG+I +G + P +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKH 72
Query: 211 S-AYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMK 269
A+V Q M V++ L+F R +KI P LD
Sbjct: 73 DIAFVYQNYSLFPHMNVKKNLEFG----------------MRMKKIK--DPKRVLDT--- 111
Query: 270 SFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329
L +E++ LD TL SGG+++R+ LV ++L
Sbjct: 112 -------ARDLKIEHL-----LDRNPLTL---------SGGEQQRVALARALVTNPKILL 150
Query: 330 MDEISNGLDSSTTYQIIKYLK--HSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387
+DE + LD T + L H L TV+ + EA + D + ++ +G+++
Sbjct: 151 LDEPLSALDPRTQENAREMLSVLHKKNKL---TVLHITHDQTEARIMADRIAVVMDGKLI 207
Query: 388 YQG 390
G
Sbjct: 208 QVG 210
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
S +C QN PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 1019
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 95/212 (44%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
S +C QN PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQNSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 1019
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 83
Query: 904 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 957
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 84 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 134
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 1015
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 135 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 191
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
N R +V + ++ + D++L + G Y
Sbjct: 192 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 223
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 81/190 (42%), Gaps = 25/190 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N++ + PG L+G +G+GK+TL+ EG+I I G T +
Sbjct: 36 ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQW 92
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFV-EEVMELVELTSLSGALIG 962
+ G+ + +FS R L+ A +E+ ++ + L +
Sbjct: 93 R--------KAFGVIPQKVFIFSGTFRK----NLDPNAAHSDQEIWKVADEVGLRSVIEQ 140
Query: 963 LPG------ING---LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013
PG ++G LS ++ + +A +++ I+ +DEP++ LD I+ RT++
Sbjct: 141 FPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ 200
Query: 1014 IVNTGRTIVC 1023
I+C
Sbjct: 201 AFADCTVILC 210
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 4/80 (5%)
Query: 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366
+S G K+ + ++ A++L +DE S LD TYQII+ + +A TVI L +
Sbjct: 156 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLD-PVTYQIIR--RTLKQAFADCTVI-LCE 211
Query: 367 PAPEAYELFDDVILLSEGQI 386
EA D +++ E ++
Sbjct: 212 ARIEAMLECDQFLVIEENKV 231
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 23/210 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S +C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 1021
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 89/210 (42%), Gaps = 23/210 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S +C Q PG T+ E+++F E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 1021
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 77/171 (45%), Gaps = 30/171 (17%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919
+ G +G GK+TLM +A + + G+P ++E + Y E + + T
Sbjct: 466 ICGPNGCGKSTLMRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 512
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+ +F E + T+ A ++++E + +I +P I+ LS + +L +
Sbjct: 513 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEMIAMP-ISALSGGWKMKLAL 559
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV 606
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 63/148 (42%), Gaps = 33/148 (22%)
Query: 301 DEML----KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356
DEM+ +SGG K +L ++ A +L +DE +N LD+ ++ YL
Sbjct: 539 DEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC---- 594
Query: 357 DGTTVISLLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVAD 414
G T I++ D V L + E I Y+G ++ + N +
Sbjct: 595 -GITSITISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTE 632
Query: 415 FLQEVTSKKDQEQYWSNPYLPYRYISPG 442
F+++ + K E+ SN L +++ PG
Sbjct: 633 FVKKCPAAKAYEEL-SNTDLEFKFPEPG 659
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+E+ E + L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 878 KEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 57/129 (44%), Gaps = 11/129 (8%)
Query: 265 DIFMKSFALGGQKTSLV---VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321
++ MK GQ L +E +LGLD +V ++G+SGGQK +L
Sbjct: 860 EVDMKEALASGQFRPLTRKEIEEHCSMLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGT 916
Query: 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381
++ +DE +N LD + + K LK +G +I + A L ++V +
Sbjct: 917 WQRPHLIVLDEPTNYLDRDSLGALSKALKE----FEGGVII-ITHSAEFTKNLTEEVWAV 971
Query: 382 SEGQIVYQG 390
+G++ G
Sbjct: 972 KDGRMTPSG 980
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 904 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 957
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 122
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 1015
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 123 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 179
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
N R +V + ++ + D++L + G Y
Sbjct: 180 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 211
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 969 LSTEQRKRLTIAVELVAN--PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH 1026
LS + +RL +A +L +N + +DEP++GL ++ + N+ G ++ H
Sbjct: 380 LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEH 439
Query: 1027 QPSIDIFESFDELLFM-----KRGGELIYAGP 1053
+D+ D L+ + ++GGE++Y+GP
Sbjct: 440 --DLDVIRRADWLVDVGPEAGEKGGEILYSGP 469
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 49/100 (49%), Gaps = 11/100 (11%)
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANP---SIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+G P LS + +R+ +A EL + ++ +DEPT+GL + R + +V+
Sbjct: 724 LGQPATE-LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 1052
G T++ H+ + + + D +L + + GG L+ G
Sbjct: 783 GNTVIAVEHK--MQVVAASDWVLDIGPGAGEDGGRLVAQG 820
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.0 bits (84), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 90/210 (42%), Gaps = 24/210 (11%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S +C Q PG T+ E+++ ++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 155
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 1021
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 156 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 214
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
V + ++ D++L + +G Y
Sbjct: 215 VTS----KMEHLRKADKILILHQGSSYFYG 240
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 961 IGLPGINGLSTEQRKRLTIAVEL---VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 1052
G T++ H ++D+ ++ D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV---- 947
GY ++E+ A + G ++ + ++V E+L F L L +E E + R + E+
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTA--MSVTEALAFFDGLEL-TEKEAQIARLILREIRDRL 485
Query: 948 -------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ + L+ +G L G QR RL + + +DEP+ GL
Sbjct: 486 GFLQNVGLDYLTLSRSAGTLSG-------GEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 538
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAG 1052
R ++ T++++ + G T++ H D + D L+ + GGE++ AG
Sbjct: 539 QRDNDRLIATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAG 593
Score = 29.6 bits (65), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 22/89 (24%)
Query: 790 EYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEG-----VLEDRLQL 844
E + +SL G+Y K F+ +P E ++ V+ R
Sbjct: 597 EVMNDPNSLTGQYLSGK-----------------KFIPIPAERRRPDGRWLEVVGAREHN 639
Query: 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMD 873
L NV+ G A+ GVSG+GK+TL++
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVN 668
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 36.6 bits (83), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 961 IGLPGINGLSTEQRKRLTIAVEL---VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+
Sbjct: 839 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 897
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 1052
G T++ H ++D+ ++ D ++ + RGG+++ G
Sbjct: 898 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 935
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 76/177 (42%), Gaps = 28/177 (15%)
Query: 892 GYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEV---- 947
GY ++E+ A + G ++ + +V E+L F L L +E E + R + E+
Sbjct: 429 GYRLKKESLAVLVGGKHIGEVTA--XSVTEALAFFDGLEL-TEKEAQIARLILREIRDRL 485
Query: 948 -------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
++ + L+ +G L G QR RL + + +DEP+ GL
Sbjct: 486 GFLQNVGLDYLTLSRSAGTLSG-------GEAQRIRLATQIGSRLTGVLYVLDEPSIGLH 538
Query: 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAG 1052
R ++ T+++ + G T++ H D + D L+ + GGE++ AG
Sbjct: 539 QRDNDRLIATLKSXRDLGNTLIVVEHDE--DTXLAADYLIDIGPGAGIHGGEVVAAG 593
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 52/100 (52%), Gaps = 11/100 (11%)
Query: 961 IGLPGINGLSTEQRKRLTIAVEL---VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017
+G P LS + +R+ +A EL ++ +DEPT+GL A ++ + +V+
Sbjct: 537 LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN 595
Query: 1018 GRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAG 1052
G T++ H ++D+ ++ D ++ + RGG+++ G
Sbjct: 596 GDTVLVIEH--NLDVIKTADYIIDLGPEGGDRGGQIVAVG 633
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 27/170 (15%)
Query: 900 FARISGYCEQNDIHS-PGLTVLESLLFSAWLRLPSEIELETQRAFVEEV----------- 947
FARI I ++V E+L F L L +E E + R + E+
Sbjct: 132 FARIGRLVGGKHIGEVTAMSVTEALAFFDGLEL-TEKEAQIARLILREIRDRLGFLQNVG 190
Query: 948 MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIV 1007
++ + L+ +G L G QR RL + + +DEP+ GL R +
Sbjct: 191 LDYLTLSRSAGTLSG-------GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRL 243
Query: 1008 MRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAG 1052
+ T++++ + G T++ H D + D L+ + GGE++ AG
Sbjct: 244 IATLKSMRDLGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAG 291
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.2 bits (82), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 71
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
S +C Q PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 72 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 123
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 1019
G GI LS QR R+++A + + + +D P LD + + + + N R
Sbjct: 124 GEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 182
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
+V + ++ + D++L + G Y
Sbjct: 183 ILVTS----KMEHLKKADKILILHEGSSYFYG 210
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From
Yersinia Pestis
Length = 266
Score = 35.8 bits (81), Expect = 0.13, Method: Composition-based stats.
Identities = 49/209 (23%), Positives = 88/209 (42%), Gaps = 24/209 (11%)
Query: 829 PVELKQEGVLEDRLQ---LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIE 885
PV L + L +Q L+ +V+ G + A++G +GAGK+TL+ +L G +
Sbjct: 8 PVALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS--H 65
Query: 886 GDIYISGY---PKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRA 942
G+ ++ G + + AR Q + +V E + R P + Q
Sbjct: 66 GECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVIQMG---RAPYGGSQDRQA- 121
Query: 943 FVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV------ANPSIVFMDEPT 996
+++VM + +L+ LS +++R+ +A L P +F+DEPT
Sbjct: 122 -LQQVMAQTDCLALAQR-----DYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175
Query: 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
S LD +R +R + VC +
Sbjct: 176 SALDLYHQQHTLRLLRQLTRQEPLAVCCV 204
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 94/216 (43%), Gaps = 35/216 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 957
S +C Q PG T+ E+++F + + +LE E++ + E ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIFGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 152
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 1015
++G GI LS Q+ ++++A + + + +D P LD + + + +
Sbjct: 153 --VLGEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
N R +V + ++ + D++L + G Y
Sbjct: 210 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 241
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 93/216 (43%), Gaps = 35/216 (16%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSA------WLRLPSEIELETQRAFVEEVMELVELTSLS 957
S +C Q PG T+ E+++ + + +LE E++ + E ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIAGVSYDEYRYRSVIKACQLE------EDISKFAEKDNI- 152
Query: 958 GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIV 1015
++G GI LS QR R+++A + + + +D P LD + + + +
Sbjct: 153 --VLGEGGIT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA 209
Query: 1016 NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
N R +V + ++ + D++L + G Y
Sbjct: 210 NKTRILVTS----KMEHLKKADKILILHEGSSYFYG 241
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 25/169 (14%)
Query: 857 LTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISG---YPKRQETFARIS------- 904
+TA+VG S +GK+T+++ + G I+ G + G R+E +I
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 905 GYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQR----AFVEEVMELVELTSLSGAL 960
Q + +P + V+E +E R +E+ E + + L+
Sbjct: 96 PQAAQQSL-NPTMKVIE--------HFKDTVEAHGVRWSHSELIEKASEKLRMVRLNPEA 146
Query: 961 IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009
+ LS ++R+ IA+ L+ +P ++ +DEPTS LD A +++
Sbjct: 147 VLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQ 195
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S +C Q PG T+ E+++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIISGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 1021
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 35.0 bits (79), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 88/210 (41%), Gaps = 23/210 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L N+ G + A+ G +G+GKT+L+ ++ G EG I SG R+
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEAS--EGIIKHSG---------RV 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL 963
S +C Q PG T+ E+++ E ++ + ++ + ++G
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIRGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGE 156
Query: 964 PGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGRTI 1021
G+ LS QR R+++A + + + +D P LD V + + + N R +
Sbjct: 157 GGVT-LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRIL 215
Query: 1022 VCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
V + ++ D++L + +G Y
Sbjct: 216 VTS----KMEHLRKADKILILHQGSSYFYG 241
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 37/228 (16%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919
+ G +G GK+TL +A + + G+P ++E + Y E + + T
Sbjct: 466 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 512
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+ +F E + T+ A ++++E + I P I+ LS + +L +
Sbjct: 513 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 559
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+ ++ E
Sbjct: 560 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV-FLDNVCEY 614
Query: 1040 LFMKRGGEL-IYAGPLGS--KSCELIKYFEVES---FMFKSPRIFYCQ 1081
+ G +L Y G K C K +E S FK P Y +
Sbjct: 615 IINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLE 662
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+ +SGG K +L ++ A +L +DE +N LD+ ++ YL G T I+
Sbjct: 546 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-----GITSIT 600
Query: 364 LLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
+ D V L + E I Y+G ++ + N +F+++ +
Sbjct: 601 ISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTEFVKKCPA 639
Query: 422 KKDQEQYWSNPYLPYRYISPG 442
K E+ SN L +++ PG
Sbjct: 640 AKAYEEL-SNTDLEFKFPEPG 659
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+E+ E L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 878 KEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 933
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
+E LGLD +V ++G+SGGQK +L ++ +DE +N LD +
Sbjct: 880 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 936
Query: 342 TYQIIKYLK 350
+ K LK
Sbjct: 937 LGALSKALK 945
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.9 bits (76), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 54/228 (23%), Positives = 94/228 (41%), Gaps = 37/228 (16%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919
+ G +G GK+TL +A + + G+P ++E + Y E + + T
Sbjct: 460 ICGPNGCGKSTLXRAIANGQ----------VDGFPTQEECR---TVYVEHDIDGTHSDTS 506
Query: 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979
+ +F E + T+ A ++++E + I P I+ LS + +L +
Sbjct: 507 VLDFVF--------ESGVGTKEAIKDKLIEF----GFTDEXIAXP-ISALSGGWKXKLAL 553
Query: 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
A ++ N I+ +DEPT+ LD A ++ N +NT TI S+ ++ E
Sbjct: 554 ARAVLRNADILLLDEPTNHLDTVNVAWLV----NYLNTCGITSITISHDSV-FLDNVCEY 608
Query: 1040 LFMKRGGEL-IYAGPLGS--KSCELIKYFEVES---FMFKSPRIFYCQ 1081
+ G +L Y G K C K +E S FK P Y +
Sbjct: 609 IINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLE 656
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVIS 363
+ +SGG K +L ++ A +L +DE +N LD+ ++ YL G T I+
Sbjct: 540 ISALSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC-----GITSIT 594
Query: 364 LLQPAPEAYELFDDVIL--LSEGQIVYQGPRVSVLDFFASMGFSCPKRKNVADFLQEVTS 421
+ D V L + E I Y+G ++ + N +F+++ +
Sbjct: 595 ISH---------DSVFLDNVCEYIINYEGLKLRKY------------KGNFTEFVKKCPA 633
Query: 422 KKDQEQYWSNPYLPYRYISPG 442
K E+ SN L +++ PG
Sbjct: 634 AKAYEEL-SNTDLEFKFPEPG 653
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 945 EEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000
+E+ E L ++ I GLS Q+ +L +A P ++ +DEPT+ LD
Sbjct: 872 KEIEEHCSXLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLD 927
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSST 341
+E LGLD +V ++G+SGGQK +L ++ +DE +N LD +
Sbjct: 874 IEEHCSXLGLDP---EIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDS 930
Query: 342 TYQIIKYLK 350
+ K LK
Sbjct: 931 LGALSKALK 939
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 16/97 (16%)
Query: 790 EYLQRSSSLNGKYFKQKGMVLPFQPLSMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVT 849
E L+ S+ G Y + S+ I VD +L G E L+ +
Sbjct: 614 ELLRNKDSITGAYLSGRE--------SIEIPAIRRSVDPRRQLTVVGAREHNLR---GID 662
Query: 850 GAFRPGVLTALVGVSGAGKTTLMD-----VLAGRKTG 881
+F GVLT++ GVSG+GK+TL++ VLA R G
Sbjct: 663 VSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNG 699
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 969 LSTEQRKRLTIAVEL---VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI 1025
LS + +R+ +A EL ++ +DEPT+GL ++ + +V+ G T++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 1026 HQPSIDIFESFD 1037
H ++D+ ++ D
Sbjct: 924 H--NLDVIKTSD 933
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 48/108 (44%), Gaps = 11/108 (10%)
Query: 951 VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT 1010
+E SLS A L G QR RL + + +DEP+ GL R ++ T
Sbjct: 510 LEYLSLSRAAATLSG----GEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIET 565
Query: 1011 VRNIVNTGRTIVCTIHQPSIDIFESFDELLFM-----KRGGELIYAGP 1053
+ + + G T++ H D E D ++ + + GG ++++GP
Sbjct: 566 LTRLRDLGNTLIVVEHDE--DTIEHADWIVDIGPGAGEHGGRIVHSGP 611
>pdb|3L39|A Chain A, Crystal Structure Of Putative Phou-Like Phosphate Regulatory
Protein (Bt4638) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.93 A Resolution
Length = 227
Score = 33.5 bits (75), Expect = 0.58, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 29/48 (60%)
Query: 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039
MD+ G+++ A IV+ R I +G+ + IH+ +I+I ++ DEL
Sbjct: 103 MDDVIDGINSSAKRIVIYNPRPISESGKELSRLIHEEAINIGKAMDEL 150
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 33.5 bits (75), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 94/212 (44%), Gaps = 28/212 (13%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L ++ G L A+ G +GAGKT+L+ ++ G EG I SG RI
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS--EGKIKHSG---------RI 101
Query: 904 SGYCEQNDIHSPGLTVLESLLFSAW--LRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
S +C Q PG T+ E+++ ++ R S I+ E++ + E ++ ++
Sbjct: 102 S-FCSQFSWIMPG-TIKENIIGVSYDEYRYRSVIK---ACQLEEDISKFAEKDNI---VL 153
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRT--VRNIVNTGR 1019
G GI LS Q+ ++++A + + + +D P LD + + + + N R
Sbjct: 154 GEGGIT-LSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTR 212
Query: 1020 TIVCTIHQPSIDIFESFDELLFMKRGGELIYA 1051
+V + ++ + D++L + G Y
Sbjct: 213 ILVTS----KMEHLKKADKILILHEGSSYFYG 240
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 33.1 bits (74), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 28/183 (15%)
Query: 860 LVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918
++G +G+GKTTL+ ++G G+I+I+G R+ + R S + + G+T
Sbjct: 35 ILGPNGSGKTTLLRAISGLLP---YSGNIFINGMEVRKIRNYIRYS--TNLPEAYEIGVT 89
Query: 919 VLESLLFSAWLR-LPSEIELETQRAFV--EEVMELVELTSLSGALIGLPGINGLSTEQRK 975
V + + L+ L ++ LE +A EE++ +L LS G S R
Sbjct: 90 VNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRR-KLYKLSA---------GQSVLVRT 139
Query: 976 RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES 1035
L +A + P IV +DEP +DA ++ R ++ G+ + H+ +D+
Sbjct: 140 SLALA----SQPEIVGLDEPFENVDAARRHVISRYIK---EYGKEGILVTHE--LDMLNL 190
Query: 1036 FDE 1038
+ E
Sbjct: 191 YKE 193
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 33.1 bits (74), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 67/144 (46%), Gaps = 23/144 (15%)
Query: 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976
+TV E+L F + +PS ++ ++++ L +G P LS + +R
Sbjct: 767 MTVDEALEF--FKNIPS----------IKRTLQVLHDVGLGYVKLGQPATT-LSGGEAQR 813
Query: 977 LTIAVELVANPS---IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIF 1033
+ +A EL + + +DEPT GL ++ + +V+ G T++ H ++D+
Sbjct: 814 IKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEH--NLDVI 871
Query: 1034 ESFDELLFM-----KRGGELIYAG 1052
++ D ++ + K GG ++ G
Sbjct: 872 KNADHIIDLGPEGGKEGGYIVATG 895
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 936 ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995
E+E + F+ +V +E +LS + L G QR RL + I +DEP
Sbjct: 440 EIEKRLEFLVDVG--LEYLTLSRSATTLSG----GESQRIRLATQIGSGLTGVIYVLDEP 493
Query: 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSI 1030
T GL R +++T++ + + G T++ H +
Sbjct: 494 TIGLHPRDTERLIKTLKKLRDLGNTVIVVEHDEEV 528
>pdb|1DG3|A Chain A, Structure Of Human Guanylate Binding Protein-1 In
Nucleotide Free Form
pdb|1F5N|A Chain A, Human Guanylate Binding Protein-1 In Complex With The Gtp
Analogue, Gmppnp
Length = 592
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 3/40 (7%)
Query: 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 881
L++L +T +P V+ A+VG+ GK+ LM+ LAG+K G
Sbjct: 28 LKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 64
>pdb|2B8W|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B8W|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GmpALF4
pdb|2B92|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2B92|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With GdpALF3
pdb|2BC9|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Non-Hydrolysable Gtp Analogue Gppnhp
pdb|2D4H|A Chain A, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
pdb|2D4H|B Chain B, Crystal-Structure Of The N-Terminal Large Gtpase Domain Of
Human Guanylate Binding Protein 1 (Hgbp1) In Complex
With Gmp
Length = 328
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 28/42 (66%), Gaps = 3/42 (7%)
Query: 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG 881
+ L++L +T +P V+ A+VG+ GK+ LM+ LAG+K G
Sbjct: 37 EALKILSAIT---QPMVVVAIVGLYRTGKSYLMNKLAGKKKG 75
>pdb|3KFL|A Chain A, Leishmania Major Methionyl-Trna Synthetase In Complex With
Methionyladenylate And Pyrophosphate
Length = 564
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 51/132 (38%), Gaps = 19/132 (14%)
Query: 581 WVYTIPSWALSIPTSLIESGFWVAVTYYVI-----GYDP--NVVRFSRQLLLYFFLHQMS 633
W + S L +P L+ G+W + +DP F L YF + + +
Sbjct: 312 WPAFLMSAELPLPERLVSHGWWTKDHKKISKSLGNAFDPVEKAKEFGIDALKYFLMRESN 371
Query: 634 IGLFRVIGSLGRNMIVANTFGSFAMLVVMALGGFIISRDSIPKWWIWGFWVSPLMYAQNA 693
F+ G +VA G A + G ++SR PK + G W P Y+++
Sbjct: 372 ---FQDDGDYSDKNMVARLNGELADTL-----GNLVSRCVAPKINVNGMWPEPAEYSESD 423
Query: 694 ----ASVNEFLG 701
AS+N G
Sbjct: 424 KTLIASLNNLAG 435
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.6 bits (70), Expect = 2.6, Method: Composition-based stats.
Identities = 37/174 (21%), Positives = 75/174 (43%), Gaps = 19/174 (10%)
Query: 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARI 903
+L +T G + G +G GKTTL+ ++ ++G+I +G P ++
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKP--LKGEIIYNGVP-----ITKV 76
Query: 904 SG--YCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI 961
G + +I P +E L + + S ++ + + + +E VE+ L L
Sbjct: 77 KGKIFFLPEEIIVPRKISVEDYLKA----VASLYGVKVNKNEIMDALESVEVLDLKKKL- 131
Query: 962 GLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015
LS +R+ +A L+ N I +D+P +D + V++++ I+
Sbjct: 132 -----GELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEIL 180
>pdb|1V9X|A Chain A, Solution Structure Of The First Zn-Finger Domain Of
Poly(Adp-Ribose) Polymerase-1
Length = 114
Score = 31.2 bits (69), Expect = 3.0, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 1 MWNSAENVFSRTSSFR--DEVEDEEALRWAALERLPTYARA 39
MWN A + +T + D+VE E+LRW +++ Y +
Sbjct: 52 MWNHASCILKKTKQIKSVDDVEGIESLRWEDQQKIRKYVES 92
>pdb|4AK9|A Chain A, Structure Of Chloroplast Ftsy From Physcomitrella Patens
pdb|4AK9|B Chain B, Structure Of Chloroplast Ftsy From Physcomitrella Patens
Length = 318
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGI----IEGDIYISGYPKRQETFARIS 904
G RP VL +VGV+G GKTT + LA R K G+ GD + + ++ E +A+ +
Sbjct: 112 GNSRPAVLM-IVGVNGGGKTTTLGKLANRFKKEGVKVLMAAGDTFRAAAGEQLEVWAQRT 170
Query: 905 G 905
G
Sbjct: 171 G 171
>pdb|4E04|A Chain A, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis.
pdb|4E04|B Chain B, Rpbphp2 Chromophore-binding Domain Crystallized By
Homologue-directed Mutagenesis
Length = 327
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 11/76 (14%)
Query: 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPG 965
C+ IH PG LL + L V L ELT L+ GALIG
Sbjct: 15 CDDEPIHIPGAIQPHGLLLA----------LAADMTIVAGSDNLPELTGLAIGALIGRSA 64
Query: 966 INGLSTEQRKRLTIAV 981
+ +E RLTIA+
Sbjct: 65 ADVFDSETHNRLTIAL 80
>pdb|2RCN|A Chain A, Crystal Structure Of The Ribosomal Interacting Gtpase Yjeq
From The Enterobacterial Species Salmonella Typhimurium
Length = 358
Score = 30.8 bits (68), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI-YISGYPKRQETFARISGYCEQND-I 912
G ++ G SG GK++L++ L G + I+ D+ +SG + T AR+ + D I
Sbjct: 215 GRISIFAGQSGVGKSSLLNALLGLQN-EILTNDVSNVSGLGQHTTTAARLYHFPHGGDVI 273
Query: 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVE 945
SPG+ F W P +I + FVE
Sbjct: 274 DSPGVRE-----FGLWHLEPEQI----TQGFVE 297
>pdb|2INB|A Chain A, Crystal Structure Of An Xish Family Protein
(Zp_00107633.1) From Nostoc Punctiforme Pcc 73102 At
1.60 A Resolution
Length = 140
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 42/77 (54%), Gaps = 9/77 (11%)
Query: 779 RKGENVVIELREYLQRSSSLN------GKYFKQKGMVLPFQP---LSMAFGNINYFVDVP 829
R+GE + +E++ +L+RSS+++ G++ +G + QP L +A Y
Sbjct: 51 REGEKIAVEVKSFLERSSAISEFHTALGQFINYRGALRRRQPERVLYLAVPLTTYKTFFQ 110
Query: 830 VELKQEGVLEDRLQLLV 846
++ +E + E++++ L+
Sbjct: 111 LDFPKEXIAENQVKXLI 127
>pdb|2CVF|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVF|B Chain B, Crystal Structure Of The Radb Recombinase
pdb|2CVH|A Chain A, Crystal Structure Of The Radb Recombinase
pdb|2CVH|B Chain B, Crystal Structure Of The Radb Recombinase
Length = 220
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 850 GAFRPGVLTALVGVSGAGKTTL---MDVLAGRK 879
G F PGVLT + G +GKTTL +L+G+K
Sbjct: 15 GGFAPGVLTQVYGPYASGKTTLALQTGLLSGKK 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,690,768
Number of Sequences: 62578
Number of extensions: 1266696
Number of successful extensions: 3363
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 3034
Number of HSP's gapped (non-prelim): 300
length of query: 1085
length of database: 14,973,337
effective HSP length: 109
effective length of query: 976
effective length of database: 8,152,335
effective search space: 7956678960
effective search space used: 7956678960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)