Query 001400
Match_columns 1085
No_of_seqs 723 out of 5074
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 02:09:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001400.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001400hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.6E-73 5.6E-78 751.8 55.9 214 816-1054 1076-1299(1321)
2 3g5u_A MCG1178, multidrug resi 100.0 1.8E-67 6.2E-72 692.7 59.1 215 816-1055 1030-1254(1284)
3 3bk7_A ABC transporter ATP-bin 100.0 9.9E-59 3.4E-63 563.2 34.9 188 844-1056 371-560 (607)
4 1yqt_A RNAse L inhibitor; ATP- 100.0 2.1E-58 7.1E-63 555.4 34.8 188 844-1056 301-490 (538)
5 3ozx_A RNAse L inhibitor; ATP 100.0 2.4E-57 8.1E-62 544.3 33.7 202 844-1068 283-486 (538)
6 3ux8_A Excinuclease ABC, A sub 100.0 8.4E-56 2.9E-60 550.2 38.3 214 147-395 30-296 (670)
7 2iw3_A Elongation factor 3A; a 100.0 4.1E-56 1.4E-60 555.1 34.6 184 148-396 448-634 (986)
8 3j16_B RLI1P; ribosome recycli 100.0 1.2E-55 4E-60 534.9 32.5 201 843-1068 361-568 (608)
9 3pih_A Uvrabc system protein A 100.0 2.9E-42 9.9E-47 431.1 32.0 197 844-1055 599-898 (916)
10 3tui_C Methionine import ATP-b 100.0 6.4E-42 2.2E-46 387.0 27.1 203 841-1055 40-249 (366)
11 3tui_C Methionine import ATP-b 100.0 9.2E-42 3.1E-46 385.7 26.5 207 147-396 40-252 (366)
12 3tif_A Uncharacterized ABC tra 100.0 1.1E-41 3.8E-46 367.7 25.9 204 842-1055 18-230 (235)
13 3rlf_A Maltose/maltodextrin im 100.0 9E-42 3.1E-46 388.4 26.2 212 833-1056 7-220 (381)
14 3fvq_A Fe(3+) IONS import ATP- 100.0 6E-42 2E-46 387.4 24.4 213 832-1056 7-225 (359)
15 2olj_A Amino acid ABC transpor 100.0 2E-41 7E-46 370.4 26.4 207 837-1055 32-244 (263)
16 2pcj_A ABC transporter, lipopr 100.0 1.7E-41 5.7E-46 363.8 25.2 205 836-1053 11-222 (224)
17 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-41 4.4E-46 374.1 24.0 203 842-1056 21-230 (275)
18 1b0u_A Histidine permease; ABC 100.0 2.3E-41 7.9E-46 371.0 25.5 207 837-1055 14-238 (262)
19 2r6f_A Excinuclease ABC subuni 100.0 1E-40 3.5E-45 412.7 33.6 196 844-1055 639-938 (972)
20 4g1u_C Hemin import ATP-bindin 100.0 1.4E-41 4.8E-46 373.0 22.9 216 838-1067 20-247 (266)
21 1vpl_A ABC transporter, ATP-bi 100.0 4.4E-41 1.5E-45 366.7 25.3 206 838-1055 24-231 (256)
22 3rlf_A Maltose/maltodextrin im 100.0 5.1E-41 1.7E-45 382.2 26.5 207 148-397 16-223 (381)
23 3fvq_A Fe(3+) IONS import ATP- 100.0 3.9E-41 1.3E-45 380.8 24.8 207 148-397 17-228 (359)
24 1g6h_A High-affinity branched- 100.0 3.3E-41 1.1E-45 369.2 22.4 209 838-1055 16-238 (257)
25 1z47_A CYSA, putative ABC-tran 100.0 6.1E-41 2.1E-45 379.6 24.9 204 840-1055 26-231 (355)
26 2it1_A 362AA long hypothetical 100.0 1.1E-40 3.9E-45 378.8 25.9 210 834-1055 8-219 (362)
27 2yyz_A Sugar ABC transporter, 100.0 9.4E-41 3.2E-45 379.1 25.2 210 834-1055 8-219 (359)
28 1ji0_A ABC transporter; ATP bi 100.0 1.1E-40 3.7E-45 361.3 23.7 205 838-1055 15-224 (240)
29 1g29_1 MALK, maltose transport 100.0 1.8E-40 6E-45 379.5 26.2 210 834-1055 8-225 (372)
30 2vf7_A UVRA2, excinuclease ABC 100.0 5.4E-40 1.8E-44 407.5 31.8 106 942-1054 708-822 (842)
31 3tif_A Uncharacterized ABC tra 100.0 2.5E-40 8.4E-45 357.1 25.0 208 147-395 17-232 (235)
32 1v43_A Sugar-binding transport 100.0 1.8E-40 6.1E-45 378.6 24.0 208 836-1055 18-227 (372)
33 3gfo_A Cobalt import ATP-bindi 100.0 1.5E-40 5.2E-45 365.6 22.4 206 149-397 22-233 (275)
34 1oxx_K GLCV, glucose, ABC tran 100.0 1E-40 3.6E-45 379.2 21.4 205 839-1055 13-226 (353)
35 4g1u_C Hemin import ATP-bindin 100.0 5.1E-40 1.7E-44 360.6 25.9 204 148-396 24-236 (266)
36 2olj_A Amino acid ABC transpor 100.0 9.4E-40 3.2E-44 357.3 26.9 205 148-396 37-247 (263)
37 2pcj_A ABC transporter, lipopr 100.0 4.9E-40 1.7E-44 352.4 24.2 200 148-392 17-223 (224)
38 1z47_A CYSA, putative ABC-tran 100.0 4.2E-40 1.4E-44 372.7 24.8 206 148-396 28-234 (355)
39 2yyz_A Sugar ABC transporter, 100.0 4.4E-40 1.5E-44 373.6 24.8 207 148-397 16-223 (359)
40 3d31_A Sulfate/molybdate ABC t 100.0 3.2E-40 1.1E-44 373.6 22.3 205 835-1055 7-213 (348)
41 2it1_A 362AA long hypothetical 100.0 5.4E-40 1.8E-44 373.3 23.9 206 148-396 16-222 (362)
42 2ygr_A Uvrabc system protein A 100.0 6.3E-39 2.2E-43 398.4 35.1 196 844-1055 657-956 (993)
43 2ihy_A ABC transporter, ATP-bi 100.0 5E-40 1.7E-44 362.9 21.5 209 839-1056 31-249 (279)
44 2yz2_A Putative ABC transporte 100.0 6.2E-40 2.1E-44 360.7 21.9 200 842-1054 20-222 (266)
45 1vpl_A ABC transporter, ATP-bi 100.0 1.5E-39 5.2E-44 354.5 24.6 206 148-397 28-235 (256)
46 2onk_A Molybdate/tungstate ABC 100.0 6.9E-40 2.4E-44 354.0 21.6 197 844-1055 14-212 (240)
47 1v43_A Sugar-binding transport 100.0 8.8E-40 3E-44 372.8 23.6 206 148-396 24-230 (372)
48 3d31_A Sulfate/molybdate ABC t 100.0 7.3E-40 2.5E-44 370.7 22.4 201 150-396 15-216 (348)
49 2d2e_A SUFC protein; ABC-ATPas 100.0 7.3E-40 2.5E-44 357.0 21.6 210 837-1055 11-229 (250)
50 1g6h_A High-affinity branched- 100.0 1.3E-39 4.3E-44 356.6 23.5 216 148-394 20-239 (257)
51 1g29_1 MALK, maltose transport 100.0 1.1E-39 3.8E-44 372.9 24.1 206 148-396 16-228 (372)
52 1ji0_A ABC transporter; ATP bi 100.0 2.1E-39 7.1E-44 351.2 24.6 204 148-396 19-227 (240)
53 1b0u_A Histidine permease; ABC 100.0 8.3E-40 2.8E-44 358.6 21.1 205 148-396 19-241 (262)
54 1oxx_K GLCV, glucose, ABC tran 100.0 9.4E-40 3.2E-44 371.3 21.1 204 150-396 20-229 (353)
55 3nh6_A ATP-binding cassette SU 100.0 2.2E-39 7.4E-44 360.8 22.7 208 148-397 67-277 (306)
56 2nq2_C Hypothetical ABC transp 100.0 1.2E-38 4E-43 347.4 25.7 195 841-1055 17-213 (253)
57 2onk_A Molybdate/tungstate ABC 100.0 3.1E-39 1E-43 349.0 20.8 201 150-396 14-215 (240)
58 2zu0_C Probable ATP-dependent 100.0 9.5E-39 3.3E-43 351.2 24.6 211 839-1055 30-250 (267)
59 2ff7_A Alpha-hemolysin translo 100.0 6.7E-39 2.3E-43 348.4 21.9 197 841-1054 21-227 (247)
60 2qi9_C Vitamin B12 import ATP- 100.0 7.1E-39 2.4E-43 347.8 21.6 195 843-1055 14-218 (249)
61 2ixe_A Antigen peptide transpo 100.0 6E-39 2.1E-43 353.3 20.5 203 842-1055 32-241 (271)
62 3nh6_A ATP-binding cassette SU 100.0 6E-39 2.1E-43 357.2 20.0 211 816-1055 53-273 (306)
63 1sgw_A Putative ABC transporte 100.0 3.1E-39 1.1E-43 342.3 16.5 188 838-1042 19-206 (214)
64 2yz2_A Putative ABC transporte 100.0 1.9E-38 6.6E-43 348.8 21.4 205 148-397 20-227 (266)
65 2ihy_A ABC transporter, ATP-bi 100.0 3.4E-38 1.2E-42 348.3 21.8 209 148-395 34-250 (279)
66 2ff7_A Alpha-hemolysin translo 100.0 5.2E-38 1.8E-42 341.3 22.8 200 148-396 22-231 (247)
67 1mv5_A LMRA, multidrug resista 100.0 1.8E-38 6.2E-43 344.7 16.4 199 841-1055 14-222 (243)
68 2ixe_A Antigen peptide transpo 100.0 5.6E-38 1.9E-42 345.6 20.5 209 148-397 32-245 (271)
69 2d2e_A SUFC protein; ABC-ATPas 100.0 6.6E-38 2.3E-42 341.5 19.3 205 148-394 16-230 (250)
70 2ghi_A Transport protein; mult 100.0 1.4E-37 4.8E-42 340.6 19.5 196 842-1055 33-238 (260)
71 1mv5_A LMRA, multidrug resista 100.0 1E-37 3.5E-42 338.8 18.0 202 148-397 15-226 (243)
72 2qi9_C Vitamin B12 import ATP- 100.0 1.9E-37 6.5E-42 336.5 20.0 197 149-395 14-220 (249)
73 2ghi_A Transport protein; mult 100.0 4.4E-37 1.5E-41 336.6 21.7 200 148-397 33-242 (260)
74 2nq2_C Hypothetical ABC transp 100.0 1.1E-36 3.8E-41 331.9 24.7 197 148-395 18-215 (253)
75 2zu0_C Probable ATP-dependent 100.0 8.2E-37 2.8E-41 335.8 23.4 223 148-405 33-261 (267)
76 2pjz_A Hypothetical protein ST 100.0 3E-37 1E-41 337.4 19.0 190 842-1054 18-210 (263)
77 2pjz_A Hypothetical protein ST 100.0 1E-36 3.5E-41 333.2 21.4 194 148-396 18-214 (263)
78 3gd7_A Fusion complex of cysti 100.0 2.8E-37 9.4E-42 354.4 16.4 200 148-397 34-242 (390)
79 2pze_A Cystic fibrosis transme 100.0 3E-36 1E-40 324.0 21.7 196 148-396 21-217 (229)
80 3gd7_A Fusion complex of cysti 100.0 5E-37 1.7E-41 352.3 15.6 198 840-1055 32-238 (390)
81 2pze_A Cystic fibrosis transme 100.0 2.7E-36 9.3E-41 324.4 20.4 186 841-1054 20-213 (229)
82 2cbz_A Multidrug resistance-as 100.0 2.2E-36 7.4E-41 326.7 18.3 187 841-1055 17-213 (237)
83 2cbz_A Multidrug resistance-as 100.0 2.3E-36 8E-41 326.5 18.5 196 148-397 18-217 (237)
84 4a82_A Cystic fibrosis transme 100.0 2.4E-36 8.1E-41 368.6 20.2 208 148-397 354-564 (578)
85 3qf4_A ABC transporter, ATP-bi 100.0 3.7E-36 1.3E-40 367.0 20.2 208 148-397 356-566 (587)
86 1sgw_A Putative ABC transporte 100.0 1.4E-36 4.7E-41 321.9 13.6 188 149-386 23-210 (214)
87 2yl4_A ATP-binding cassette SU 100.0 1.6E-35 5.6E-40 362.7 24.1 203 148-396 357-569 (595)
88 3b5x_A Lipid A export ATP-bind 100.0 1.8E-35 6.1E-40 361.4 24.2 202 148-397 356-567 (582)
89 3b60_A Lipid A export ATP-bind 100.0 1.7E-35 5.9E-40 361.6 22.9 202 148-397 356-567 (582)
90 3qf4_B Uncharacterized ABC tra 100.0 7.1E-36 2.4E-40 365.6 19.5 208 148-397 368-578 (598)
91 4a82_A Cystic fibrosis transme 100.0 2.6E-35 8.7E-40 359.5 22.0 212 816-1055 339-560 (578)
92 2yl4_A ATP-binding cassette SU 100.0 5.9E-35 2E-39 357.8 24.9 216 817-1056 342-567 (595)
93 3qf4_A ABC transporter, ATP-bi 100.0 1.1E-35 3.8E-40 362.7 17.1 213 816-1056 341-563 (587)
94 3b60_A Lipid A export ATP-bind 100.0 2.6E-35 9E-40 360.0 19.9 197 842-1054 356-562 (582)
95 3b5x_A Lipid A export ATP-bind 100.0 2.9E-35 9.9E-40 359.6 18.8 213 816-1055 341-563 (582)
96 3qf4_B Uncharacterized ABC tra 100.0 1.1E-34 3.7E-39 355.1 21.2 211 816-1055 354-574 (598)
97 4f4c_A Multidrug resistance pr 100.0 4.5E-35 1.5E-39 386.3 18.2 213 145-397 1089-1304(1321)
98 2bbs_A Cystic fibrosis transme 100.0 1.3E-34 4.4E-39 320.9 18.3 185 842-1055 51-243 (290)
99 2bbs_A Cystic fibrosis transme 100.0 3.8E-34 1.3E-38 317.1 17.4 194 149-396 52-246 (290)
100 3g5u_A MCG1178, multidrug resi 100.0 1.1E-32 3.7E-37 362.8 20.5 211 147-397 1045-1258(1284)
101 3bk7_A ABC transporter ATP-bin 100.0 1.3E-30 4.5E-35 316.6 19.9 191 150-397 371-563 (607)
102 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-30 5.5E-35 312.8 18.8 191 150-397 301-493 (538)
103 3ozx_A RNAse L inhibitor; ATP 100.0 2.9E-30 9.8E-35 309.6 19.8 192 150-396 283-476 (538)
104 1tf7_A KAIC; homohexamer, hexa 100.0 6.5E-32 2.2E-36 326.2 1.6 154 849-1045 275-443 (525)
105 3j16_B RLI1P; ribosome recycli 100.0 1.2E-29 4.1E-34 307.4 20.6 192 149-397 361-559 (608)
106 2iw3_A Elongation factor 3A; a 100.0 3.7E-29 1.3E-33 312.8 20.7 183 839-1054 445-630 (986)
107 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-29 7.8E-34 312.7 14.3 206 842-1056 31-295 (670)
108 3pih_A Uvrabc system protein A 99.9 7.2E-25 2.5E-29 274.4 23.0 109 281-396 784-901 (916)
109 2r6f_A Excinuclease ABC subuni 99.9 2.7E-25 9.4E-30 275.4 18.7 107 282-396 825-941 (972)
110 2vf7_A UVRA2, excinuclease ABC 99.9 6.5E-25 2.2E-29 272.6 18.2 108 281-396 709-826 (842)
111 2ygr_A Uvrabc system protein A 99.9 9.2E-25 3.1E-29 271.8 19.2 108 282-397 843-960 (993)
112 4aby_A DNA repair protein RECN 99.9 9.5E-25 3.2E-29 256.6 14.6 204 842-1051 48-380 (415)
113 2npi_A Protein CLP1; CLP1-PCF1 99.9 8.8E-27 3E-31 273.9 -3.9 184 153-396 130-337 (460)
114 2npi_A Protein CLP1; CLP1-PCF1 99.9 2.5E-27 8.7E-32 278.5 -8.7 196 847-1068 130-351 (460)
115 4aby_A DNA repair protein RECN 99.9 2.5E-23 8.5E-28 244.5 14.5 236 148-390 48-381 (415)
116 3b85_A Phosphate starvation-in 99.9 4.3E-26 1.5E-30 240.6 -13.7 144 840-1029 11-159 (208)
117 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.2E-22 1.8E-26 228.0 16.4 82 966-1050 277-364 (365)
118 4gp7_A Metallophosphoesterase; 99.9 2E-23 6.8E-28 214.1 3.3 150 847-1038 1-167 (171)
119 1e69_A Chromosome segregation 99.9 7.3E-22 2.5E-26 223.6 13.6 86 967-1055 218-309 (322)
120 3b85_A Phosphate starvation-in 99.8 1.6E-23 5.4E-28 221.0 -4.0 149 147-371 12-161 (208)
121 3qf7_A RAD50; ABC-ATPase, ATPa 99.8 3.1E-21 1.1E-25 221.6 14.3 84 302-388 275-364 (365)
122 2v9p_A Replication protein E1; 99.8 2E-23 6.9E-28 231.4 -8.5 158 148-402 113-271 (305)
123 1tq4_A IIGP1, interferon-induc 99.8 8.8E-23 3E-27 235.6 -6.6 172 148-379 36-248 (413)
124 1ye8_A Protein THEP1, hypothet 99.8 2.8E-21 9.4E-26 199.1 3.5 149 857-1054 2-163 (178)
125 1e69_A Chromosome segregation 99.8 2.3E-20 7.9E-25 211.2 11.3 81 303-387 216-302 (322)
126 1tq4_A IIGP1, interferon-induc 99.8 4.9E-23 1.7E-27 237.7 -11.2 171 842-1040 36-248 (413)
127 1ye8_A Protein THEP1, hypothet 99.8 4.4E-21 1.5E-25 197.5 4.5 149 163-388 2-159 (178)
128 4gp7_A Metallophosphoesterase; 99.8 4.7E-21 1.6E-25 196.4 4.5 66 306-373 83-164 (171)
129 1znw_A Guanylate kinase, GMP k 99.8 1E-23 3.5E-28 223.3 -16.1 184 841-1046 8-205 (207)
130 3b9q_A Chloroplast SRP recepto 99.8 1.6E-20 5.5E-25 209.4 -1.0 171 846-1045 91-282 (302)
131 3b9q_A Chloroplast SRP recepto 99.8 2.1E-20 7.2E-25 208.5 -0.6 174 151-386 90-284 (302)
132 2v9p_A Replication protein E1; 99.8 1.2E-22 4.1E-27 225.2 -20.2 147 843-1054 114-261 (305)
133 3sop_A Neuronal-specific septi 99.8 4E-20 1.4E-24 203.1 -0.0 147 163-368 4-150 (270)
134 3sop_A Neuronal-specific septi 99.8 1.4E-20 4.8E-25 206.8 -4.6 148 857-1029 4-151 (270)
135 2pt7_A CAG-ALFA; ATPase, prote 99.7 1.2E-19 4.2E-24 205.1 0.5 131 844-1046 160-291 (330)
136 2og2_A Putative signal recogni 99.7 9.9E-20 3.4E-24 206.6 -0.4 170 847-1045 149-339 (359)
137 1z6g_A Guanylate kinase; struc 99.7 8.8E-22 3E-26 210.1 -16.8 156 148-354 10-175 (218)
138 1z6g_A Guanylate kinase; struc 99.7 3.1E-22 1.1E-26 213.6 -20.6 177 842-1039 10-204 (218)
139 2og2_A Putative signal recogni 99.7 1.9E-19 6.4E-24 204.3 0.8 173 152-386 148-341 (359)
140 2o5v_A DNA replication and rep 99.7 1.1E-17 3.7E-22 190.3 15.1 86 301-395 259-354 (359)
141 3qkt_A DNA double-strand break 99.7 2.4E-17 8.1E-22 187.8 16.1 76 966-1043 246-327 (339)
142 1znw_A Guanylate kinase, GMP k 99.7 1E-20 3.4E-25 200.3 -11.5 184 148-382 9-202 (207)
143 3aez_A Pantothenate kinase; tr 99.7 3E-19 1E-23 200.1 -1.2 128 153-339 81-209 (312)
144 2dpy_A FLII, flagellum-specifi 99.7 1.6E-19 5.4E-24 211.2 -4.5 179 148-395 145-342 (438)
145 2dpy_A FLII, flagellum-specifi 99.7 1.4E-19 4.8E-24 211.6 -5.6 186 830-1054 132-339 (438)
146 2o5v_A DNA replication and rep 99.7 3.1E-17 1.1E-21 186.5 12.9 80 968-1056 265-353 (359)
147 2pt7_A CAG-ALFA; ATPase, prote 99.7 4E-18 1.4E-22 192.8 3.6 133 150-386 160-292 (330)
148 1cr0_A DNA primase/helicase; R 99.7 6.1E-18 2.1E-22 189.2 4.8 182 843-1045 23-235 (296)
149 3qkt_A DNA double-strand break 99.7 7.7E-16 2.6E-20 175.3 16.8 78 302-382 244-327 (339)
150 1f2t_B RAD50 ABC-ATPase; DNA d 99.7 2.3E-16 7.9E-21 156.5 10.7 76 966-1043 55-136 (148)
151 1cr0_A DNA primase/helicase; R 99.7 2.7E-17 9.1E-22 184.0 4.0 186 147-386 21-237 (296)
152 2jeo_A Uridine-cytidine kinase 99.7 2.4E-17 8.4E-22 179.0 3.4 140 146-340 10-149 (245)
153 4ad8_A DNA repair protein RECN 99.6 2.5E-16 8.7E-21 189.5 12.3 78 303-384 393-473 (517)
154 2o8b_B DNA mismatch repair pro 99.6 9.2E-18 3.2E-22 214.1 -1.1 155 840-1049 767-930 (1022)
155 2ehv_A Hypothetical protein PH 99.6 2.7E-17 9.1E-22 178.8 0.8 161 851-1043 26-206 (251)
156 2eyu_A Twitching motility prot 99.6 4.5E-17 1.5E-21 177.9 2.4 131 843-1043 15-146 (261)
157 3aez_A Pantothenate kinase; tr 99.6 3.9E-18 1.3E-22 191.0 -7.3 158 852-1044 87-244 (312)
158 2jeo_A Uridine-cytidine kinase 99.6 2.8E-17 9.5E-22 178.6 -0.7 155 840-1027 10-164 (245)
159 3thx_A DNA mismatch repair pro 99.6 6.8E-16 2.3E-20 194.5 11.3 148 841-1053 648-807 (934)
160 2obl_A ESCN; ATPase, hydrolase 99.6 4E-17 1.4E-21 185.3 -1.4 186 831-1054 47-250 (347)
161 1tf7_A KAIC; homohexamer, hexa 99.6 1.2E-15 4.1E-20 184.0 11.5 155 155-385 275-444 (525)
162 3thx_A DNA mismatch repair pro 99.6 1.3E-15 4.5E-20 191.9 10.0 89 305-395 720-811 (934)
163 2obl_A ESCN; ATPase, hydrolase 99.6 2.6E-16 8.8E-21 178.6 2.5 180 148-395 59-253 (347)
164 4a74_A DNA repair and recombin 99.6 1.7E-16 5.8E-21 170.2 0.9 152 850-1045 20-200 (231)
165 3thx_B DNA mismatch repair pro 99.6 6.8E-16 2.3E-20 193.8 4.5 138 841-1030 659-798 (918)
166 1ewq_A DNA mismatch repair pro 99.6 5.3E-16 1.8E-20 192.3 2.4 129 841-1029 565-699 (765)
167 4a74_A DNA repair and recombin 99.6 5E-16 1.7E-20 166.5 1.3 154 156-385 20-201 (231)
168 2qnr_A Septin-2, protein NEDD5 99.6 1.9E-16 6.4E-21 177.0 -2.2 160 837-1029 6-168 (301)
169 2o8b_B DNA mismatch repair pro 99.5 7.9E-16 2.7E-20 196.4 2.8 159 148-393 769-938 (1022)
170 3asz_A Uridine kinase; cytidin 99.5 9.2E-17 3.1E-21 170.2 -5.0 144 158-365 3-159 (211)
171 2eyu_A Twitching motility prot 99.5 3.1E-15 1.1E-19 163.4 5.6 133 149-383 15-147 (261)
172 1f2t_B RAD50 ABC-ATPase; DNA d 99.5 1.8E-14 6.3E-19 142.8 10.2 83 301-386 52-142 (148)
173 1rj9_A FTSY, signal recognitio 99.5 5.2E-16 1.8E-20 173.0 -1.4 148 854-1028 101-258 (304)
174 2ehv_A Hypothetical protein PH 99.5 1.1E-15 3.7E-20 166.0 0.6 71 310-382 121-206 (251)
175 3asz_A Uridine kinase; cytidin 99.5 4.2E-17 1.4E-21 172.8 -10.5 145 852-1028 3-161 (211)
176 2i3b_A HCR-ntpase, human cance 99.5 1.3E-16 4.4E-21 165.5 -6.8 159 161-390 1-169 (189)
177 1pzn_A RAD51, DNA repair and r 99.5 1.4E-15 4.7E-20 173.4 0.5 168 149-391 118-309 (349)
178 1pzn_A RAD51, DNA repair and r 99.5 1E-15 3.4E-20 174.5 -1.1 138 849-1029 125-287 (349)
179 2i3b_A HCR-ntpase, human cance 99.5 1.3E-16 4.5E-21 165.4 -8.6 171 855-1066 1-185 (189)
180 1w1w_A Structural maintenance 99.5 1.3E-13 4.3E-18 162.3 15.7 75 305-382 332-410 (430)
181 3thx_B DNA mismatch repair pro 99.5 2.1E-14 7.2E-19 180.4 9.2 155 148-388 660-816 (918)
182 1rj9_A FTSY, signal recognitio 99.5 2.4E-15 8.3E-20 167.6 -0.0 148 160-367 101-257 (304)
183 1wb9_A DNA mismatch repair pro 99.5 6.3E-15 2.2E-19 183.7 3.4 144 841-1039 594-739 (800)
184 2qnr_A Septin-2, protein NEDD5 99.5 2E-15 6.9E-20 168.7 -1.5 156 147-368 10-167 (301)
185 1ewq_A DNA mismatch repair pro 99.5 1.3E-14 4.4E-19 179.9 5.3 132 148-375 566-704 (765)
186 1nlf_A Regulatory protein REPA 99.5 4.9E-14 1.7E-18 156.0 8.1 151 851-1029 26-182 (279)
187 3szr_A Interferon-induced GTP- 99.5 1.4E-15 4.8E-20 185.7 -4.7 165 164-396 48-236 (608)
188 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.1E-14 3.8E-19 156.1 2.7 167 843-1045 10-192 (235)
189 3jvv_A Twitching mobility prot 99.5 1.6E-14 5.4E-19 164.3 3.5 125 851-1043 119-244 (356)
190 2w0m_A SSO2452; RECA, SSPF, un 99.4 5.7E-13 2E-17 142.6 12.8 78 306-384 103-192 (235)
191 1nlf_A Regulatory protein REPA 99.4 3.5E-13 1.2E-17 149.1 10.4 154 157-371 26-184 (279)
192 1wb9_A DNA mismatch repair pro 99.4 6.8E-14 2.3E-18 174.4 5.1 156 148-390 595-751 (800)
193 3szr_A Interferon-induced GTP- 99.4 2.3E-14 7.9E-19 175.0 0.1 136 858-1029 48-197 (608)
194 3kta_B Chromosome segregation 99.4 6.5E-13 2.2E-17 135.2 10.4 74 967-1043 63-140 (173)
195 2qag_C Septin-7; cell cycle, c 99.4 1.2E-14 4E-19 168.5 -2.9 156 837-1029 19-178 (418)
196 2qag_B Septin-6, protein NEDD5 99.4 2.1E-14 7.3E-19 165.4 -1.1 176 839-1027 25-218 (427)
197 4ad8_A DNA repair protein RECN 99.4 5.5E-13 1.9E-17 160.5 9.7 76 967-1045 395-473 (517)
198 1s96_A Guanylate kinase, GMP k 99.4 8.6E-14 3E-18 147.8 1.7 148 156-399 11-162 (219)
199 1pui_A ENGB, probable GTP-bind 99.3 1.5E-14 5.1E-19 152.6 -5.4 164 844-1020 17-202 (210)
200 3jvv_A Twitching mobility prot 99.3 4.1E-13 1.4E-17 152.7 5.3 59 316-384 188-246 (356)
201 1lw7_A Transcriptional regulat 99.3 2.8E-15 9.6E-20 172.6 -12.9 164 150-382 157-342 (365)
202 1s96_A Guanylate kinase, GMP k 99.3 3.5E-14 1.2E-18 150.8 -4.0 126 851-1029 12-141 (219)
203 2cvh_A DNA repair and recombin 99.3 1.3E-11 4.4E-16 130.9 15.3 152 845-1045 9-185 (220)
204 2cvh_A DNA repair and recombin 99.3 4.4E-12 1.5E-16 134.6 10.7 77 307-384 85-185 (220)
205 3kta_B Chromosome segregation 99.3 4.6E-12 1.6E-16 128.9 10.2 79 304-386 62-146 (173)
206 2bdt_A BH3686; alpha-beta prot 99.3 8.2E-15 2.8E-19 152.3 -10.9 169 161-395 2-182 (189)
207 1htw_A HI0065; nucleotide-bind 99.3 2E-13 6.8E-18 137.2 -1.5 78 148-232 20-97 (158)
208 2ewv_A Twitching motility prot 99.3 5.2E-13 1.8E-17 153.3 0.7 126 844-1039 127-253 (372)
209 2qag_C Septin-7; cell cycle, c 99.3 7.5E-13 2.6E-17 153.4 1.8 149 148-366 24-176 (418)
210 1zp6_A Hypothetical protein AT 99.3 6.4E-13 2.2E-17 138.0 1.0 141 157-351 5-146 (191)
211 2f1r_A Molybdopterin-guanine d 99.3 5.8E-14 2E-18 143.0 -7.0 112 162-328 3-125 (171)
212 1zp6_A Hypothetical protein AT 99.2 4.3E-14 1.5E-18 146.9 -8.7 154 851-1026 5-159 (191)
213 2gza_A Type IV secretion syste 99.2 2.4E-12 8.3E-17 147.3 4.9 78 150-230 164-245 (361)
214 2gza_A Type IV secretion syste 99.2 1.2E-12 4.2E-17 149.8 2.4 137 844-1045 164-302 (361)
215 2bdt_A BH3686; alpha-beta prot 99.2 8.3E-15 2.9E-19 152.2 -14.3 168 855-1056 2-181 (189)
216 1nij_A Hypothetical protein YJ 99.2 3.5E-15 1.2E-19 168.2 -19.1 155 856-1028 5-189 (318)
217 1odf_A YGR205W, hypothetical 3 99.2 2.8E-12 9.4E-17 142.0 1.9 135 159-341 29-169 (290)
218 1lw7_A Transcriptional regulat 99.2 5E-14 1.7E-18 162.1 -12.7 165 846-1043 159-342 (365)
219 2qag_B Septin-6, protein NEDD5 99.2 2.9E-12 1E-16 147.6 1.9 158 151-351 30-203 (427)
220 1n0w_A DNA repair protein RAD5 99.2 1.3E-11 4.3E-16 133.2 6.6 152 850-1045 19-209 (243)
221 1pui_A ENGB, probable GTP-bind 99.2 3.9E-13 1.3E-17 141.6 -5.8 69 282-354 129-198 (210)
222 2rcn_A Probable GTPase ENGC; Y 99.2 1.2E-12 4.2E-17 147.9 -2.3 122 150-321 205-328 (358)
223 2bbw_A Adenylate kinase 4, AK4 99.2 2.7E-13 9.2E-18 147.1 -7.7 156 160-354 26-198 (246)
224 3auy_A DNA double-strand break 99.2 3.4E-11 1.2E-15 138.6 9.4 77 967-1046 279-362 (371)
225 2ewv_A Twitching motility prot 99.2 1E-11 3.6E-16 142.5 4.8 132 149-382 126-257 (372)
226 2bbw_A Adenylate kinase 4, AK4 99.2 7.1E-14 2.4E-18 151.7 -12.8 144 854-1018 26-200 (246)
227 1htw_A HI0065; nucleotide-bind 99.2 5.1E-13 1.7E-17 134.2 -5.9 81 839-925 17-97 (158)
228 2yhs_A FTSY, cell division pro 99.1 4.4E-12 1.5E-16 147.7 0.5 152 846-1026 284-447 (503)
229 1n0w_A DNA repair protein RAD5 99.1 2.3E-11 7.9E-16 131.1 5.3 29 156-184 19-47 (243)
230 2rcn_A Probable GTPase ENGC; Y 99.1 1.1E-11 3.8E-16 140.0 2.6 120 847-983 208-328 (358)
231 2qm8_A GTPase/ATPase; G protei 99.1 1.1E-13 3.7E-18 157.0 -14.0 166 841-1016 41-260 (337)
232 1w1w_A Structural maintenance 99.1 9.1E-11 3.1E-15 137.9 9.9 76 967-1044 332-411 (430)
233 2yhs_A FTSY, cell division pro 99.1 1.4E-11 4.7E-16 143.6 2.6 81 151-234 283-372 (503)
234 2kjq_A DNAA-related protein; s 99.1 5.5E-11 1.9E-15 118.3 6.6 44 984-1028 81-125 (149)
235 2qm8_A GTPase/ATPase; G protei 99.1 1.6E-12 5.3E-17 147.4 -6.0 182 148-353 42-259 (337)
236 3e70_C DPA, signal recognition 99.1 7.6E-12 2.6E-16 140.6 -1.0 142 853-1027 127-278 (328)
237 1udx_A The GTP-binding protein 99.1 4.2E-12 1.4E-16 147.0 -3.4 156 846-1026 148-306 (416)
238 3e70_C DPA, signal recognition 99.1 1.1E-11 3.8E-16 139.3 -0.1 75 157-234 125-208 (328)
239 1p9r_A General secretion pathw 99.1 7E-12 2.4E-16 145.4 -3.2 137 148-329 156-314 (418)
240 2f1r_A Molybdopterin-guanine d 99.1 9.7E-13 3.3E-17 133.9 -9.2 139 856-1019 3-164 (171)
241 1nij_A Hypothetical protein YJ 99.0 1.3E-13 4.3E-18 155.4 -17.6 167 161-375 4-196 (318)
242 3ec2_A DNA replication protein 99.0 1.3E-10 4.4E-15 119.5 6.3 46 984-1029 98-144 (180)
243 2oap_1 GSPE-2, type II secreti 99.0 2.1E-12 7.1E-17 153.8 -8.3 85 148-235 247-331 (511)
244 3auy_A DNA double-strand break 99.0 3.8E-10 1.3E-14 129.9 10.5 98 281-382 244-359 (371)
245 3ec2_A DNA replication protein 99.0 8.1E-11 2.8E-15 121.0 3.3 48 322-370 98-146 (180)
246 2yv5_A YJEQ protein; hydrolase 99.0 5.9E-11 2E-15 132.5 1.6 124 158-319 162-300 (302)
247 3lda_A DNA repair protein RAD5 99.0 2.4E-10 8.2E-15 131.7 6.6 148 850-1045 173-363 (400)
248 1udx_A The GTP-binding protein 99.0 4.3E-11 1.5E-15 138.6 -0.7 170 151-378 147-319 (416)
249 1p9r_A General secretion pathw 99.0 9.6E-13 3.3E-17 152.6 -15.1 149 830-992 144-315 (418)
250 1odf_A YGR205W, hypothetical 3 99.0 3.1E-11 1.1E-15 133.6 -2.5 128 853-1002 29-168 (290)
251 3c8u_A Fructokinase; YP_612366 98.9 2.1E-11 7.2E-16 128.6 -4.8 121 158-334 19-140 (208)
252 2oap_1 GSPE-2, type II secreti 98.9 5.5E-13 1.9E-17 158.7 -19.4 180 842-1037 247-458 (511)
253 2x8a_A Nuclear valosin-contain 98.9 5.7E-12 2E-16 138.7 -9.9 142 148-349 33-190 (274)
254 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 2.1E-12 7.3E-17 148.0 -14.9 171 157-393 16-209 (392)
255 1sxj_E Activator 1 40 kDa subu 98.9 9.7E-10 3.3E-14 125.5 6.5 162 858-1066 39-203 (354)
256 2yv5_A YJEQ protein; hydrolase 98.9 9.3E-11 3.2E-15 130.9 -2.5 121 853-982 163-301 (302)
257 1lvg_A Guanylate kinase, GMP k 98.9 5.7E-13 1.9E-17 139.5 -19.3 57 317-383 116-173 (198)
258 2kjq_A DNAA-related protein; s 98.9 4.4E-09 1.5E-13 104.5 9.3 34 149-187 29-62 (149)
259 1sq5_A Pantothenate kinase; P- 98.8 1.1E-10 3.9E-15 130.7 -4.0 73 159-236 78-155 (308)
260 3c8u_A Fructokinase; YP_612366 98.8 2.9E-11 9.9E-16 127.5 -9.4 44 852-895 19-63 (208)
261 3lda_A DNA repair protein RAD5 98.8 1.6E-08 5.6E-13 116.5 12.6 62 323-385 272-364 (400)
262 1in4_A RUVB, holliday junction 98.8 6.4E-11 2.2E-15 134.4 -7.9 154 149-356 32-196 (334)
263 1ni3_A YCHF GTPase, YCHF GTP-b 98.8 1.1E-11 3.8E-16 142.1 -14.7 171 851-1056 16-210 (392)
264 1u0l_A Probable GTPase ENGC; p 98.8 5.2E-10 1.8E-14 124.8 -0.8 74 156-233 164-259 (301)
265 1sxj_E Activator 1 40 kDa subu 98.8 6.2E-09 2.1E-13 118.8 7.8 135 164-369 39-175 (354)
266 1t9h_A YLOQ, probable GTPase E 98.7 1.5E-09 5E-14 120.5 1.3 72 156-231 168-248 (307)
267 1lvg_A Guanylate kinase, GMP k 98.7 4.3E-12 1.5E-16 132.9 -19.4 56 979-1043 116-172 (198)
268 1sq5_A Pantothenate kinase; P- 98.7 1.2E-10 4.2E-15 130.4 -9.5 75 853-929 78-155 (308)
269 1vma_A Cell division protein F 98.6 3E-08 1E-12 110.3 8.1 114 154-354 97-213 (306)
270 2x8a_A Nuclear valosin-contain 98.6 1.8E-11 6.1E-16 134.8 -18.3 142 842-1011 33-190 (274)
271 1t9h_A YLOQ, probable GTPase E 98.6 1.9E-09 6.6E-14 119.5 -2.6 117 851-975 169-302 (307)
272 1in4_A RUVB, holliday junction 98.6 1.7E-10 5.9E-15 130.8 -11.4 152 840-1016 29-194 (334)
273 3euj_A Chromosome partition pr 98.6 1.1E-08 3.9E-13 119.7 3.4 53 148-204 17-69 (483)
274 1vma_A Cell division protein F 98.6 1.9E-08 6.5E-13 111.9 4.6 112 848-1014 97-211 (306)
275 2dr3_A UPF0273 protein PH0284; 98.6 4.4E-09 1.5E-13 113.3 -0.6 68 977-1044 117-196 (247)
276 2r6a_A DNAB helicase, replicat 98.6 7.9E-08 2.7E-12 113.5 10.1 179 843-1046 191-400 (454)
277 3k1j_A LON protease, ATP-depen 98.6 4.9E-09 1.7E-13 128.4 -0.7 159 148-351 47-227 (604)
278 2dr3_A UPF0273 protein PH0284; 98.6 3.1E-07 1E-11 98.8 13.6 60 323-383 127-196 (247)
279 2px0_A Flagellar biosynthesis 98.6 1.1E-07 3.9E-12 105.3 10.1 142 159-389 103-247 (296)
280 1u0l_A Probable GTPase ENGC; p 98.6 1.9E-08 6.4E-13 112.2 3.1 99 852-959 166-287 (301)
281 1ls1_A Signal recognition part 98.5 1.8E-07 6.2E-12 103.7 10.6 129 846-1026 91-220 (295)
282 3tr0_A Guanylate kinase, GMP k 98.5 7.3E-09 2.5E-13 108.4 -1.5 71 155-232 1-74 (205)
283 2r6a_A DNAB helicase, replicat 98.5 2.9E-07 9.8E-12 108.7 11.8 183 147-386 189-401 (454)
284 2px0_A Flagellar biosynthesis 98.5 1.5E-07 5E-12 104.5 8.6 162 853-1072 103-268 (296)
285 2zr9_A Protein RECA, recombina 98.5 2.9E-07 1E-11 104.4 10.8 77 975-1052 126-236 (349)
286 1ls1_A Signal recognition part 98.5 1.2E-06 4.1E-11 97.1 14.1 118 152-352 91-209 (295)
287 1iy2_A ATP-dependent metallopr 98.4 9.1E-11 3.1E-15 129.6 -20.0 131 839-995 59-194 (278)
288 2ius_A DNA translocase FTSK; n 98.4 2.1E-08 7.2E-13 118.3 -1.3 166 847-1029 159-343 (512)
289 1ixz_A ATP-dependent metallopr 98.4 9.9E-11 3.4E-15 127.4 -19.8 132 840-997 36-172 (254)
290 1oix_A RAS-related protein RAB 98.4 5.6E-08 1.9E-12 100.6 1.7 43 307-351 146-188 (191)
291 3euj_A Chromosome partition pr 98.4 3.6E-08 1.2E-12 115.5 0.1 51 842-895 17-67 (483)
292 1ixz_A ATP-dependent metallopr 98.4 1.5E-09 5E-14 118.1 -11.4 47 149-202 39-85 (254)
293 1iy2_A ATP-dependent metallopr 98.4 1.9E-09 6.7E-14 118.8 -10.6 76 149-231 63-142 (278)
294 3k1j_A LON protease, ATP-depen 98.4 7.9E-09 2.7E-13 126.5 -7.2 162 839-1013 44-227 (604)
295 3hr8_A Protein RECA; alpha and 98.3 3.8E-07 1.3E-11 103.1 6.8 32 156-187 56-87 (356)
296 3tr0_A Guanylate kinase, GMP k 98.3 2E-08 6.8E-13 105.1 -4.2 70 849-924 1-73 (205)
297 1oix_A RAS-related protein RAB 98.3 1.8E-07 6.2E-12 96.7 2.8 38 975-1014 152-189 (191)
298 2ius_A DNA translocase FTSK; n 98.3 1.8E-07 6.2E-12 110.4 2.3 167 153-369 159-343 (512)
299 2zr9_A Protein RECA, recombina 98.3 1E-06 3.5E-11 99.9 8.3 30 156-185 56-85 (349)
300 1qhl_A Protein (cell division 98.2 5.2E-08 1.8E-12 103.4 -3.0 59 155-217 22-91 (227)
301 3lnc_A Guanylate kinase, GMP k 98.2 3.1E-07 1.1E-11 98.1 2.5 40 148-187 14-54 (231)
302 2f9l_A RAB11B, member RAS onco 98.1 1.2E-06 4E-11 91.1 4.8 37 977-1015 130-166 (199)
303 2ce7_A Cell division protein F 98.1 7.3E-06 2.5E-10 96.3 11.0 61 309-369 93-165 (476)
304 2qtf_A Protein HFLX, GTP-bindi 98.1 1.6E-06 5.6E-11 98.9 4.9 161 160-354 177-353 (364)
305 4eun_A Thermoresistant glucoki 98.1 1.9E-07 6.5E-12 97.4 -2.8 70 156-232 24-95 (200)
306 1qhl_A Protein (cell division 98.0 1.5E-07 5.1E-12 99.9 -4.6 59 849-910 22-91 (227)
307 3lnc_A Guanylate kinase, GMP k 98.0 1.1E-06 3.7E-11 93.9 2.0 38 843-880 15-53 (231)
308 3hr8_A Protein RECA; alpha and 98.0 1.2E-06 4E-11 99.1 1.9 28 851-878 57-84 (356)
309 2ce7_A Cell division protein F 98.0 4.4E-06 1.5E-10 98.2 6.7 59 971-1029 93-165 (476)
310 2f9l_A RAB11B, member RAS onco 98.0 6.9E-06 2.4E-10 85.2 6.7 39 313-353 128-166 (199)
311 3kta_A Chromosome segregation 98.0 3.7E-06 1.3E-10 86.0 4.3 36 152-188 18-53 (182)
312 4eun_A Thermoresistant glucoki 98.0 3.2E-07 1.1E-11 95.7 -3.9 55 850-910 24-80 (200)
313 4a1f_A DNAB helicase, replicat 98.0 8.3E-06 2.8E-10 91.5 7.2 139 147-383 32-170 (338)
314 2qtf_A Protein HFLX, GTP-bindi 97.9 7.3E-06 2.5E-10 93.4 6.6 150 855-1016 178-353 (364)
315 2j41_A Guanylate kinase; GMP, 97.9 4.2E-06 1.4E-10 87.3 2.9 31 157-187 2-32 (207)
316 1zu4_A FTSY; GTPase, signal re 97.9 3E-06 1E-10 94.9 1.8 81 150-233 94-187 (320)
317 2xau_A PRE-mRNA-splicing facto 97.9 6.9E-06 2.4E-10 102.9 5.1 74 968-1042 190-265 (773)
318 3vaa_A Shikimate kinase, SK; s 97.9 6.4E-06 2.2E-10 85.7 3.8 41 146-186 10-50 (199)
319 2dhr_A FTSH; AAA+ protein, hex 97.8 3.4E-07 1.2E-11 108.3 -7.0 49 149-204 54-102 (499)
320 3a00_A Guanylate kinase, GMP k 97.8 6.4E-06 2.2E-10 84.7 2.4 27 161-187 1-27 (186)
321 2e87_A Hypothetical protein PH 97.8 4.4E-05 1.5E-09 87.0 9.2 61 967-1029 230-293 (357)
322 2xau_A PRE-mRNA-splicing facto 97.7 2.1E-05 7.2E-10 98.5 6.4 74 304-378 188-262 (773)
323 3uie_A Adenylyl-sulfate kinase 97.7 3.4E-06 1.2E-10 87.8 -0.8 52 147-202 11-64 (200)
324 4a1f_A DNAB helicase, replicat 97.7 1.5E-05 5.3E-10 89.3 4.4 127 845-1026 36-164 (338)
325 3nwj_A ATSK2; P loop, shikimat 97.7 5.3E-06 1.8E-10 89.4 0.0 40 148-187 32-74 (250)
326 4e22_A Cytidylate kinase; P-lo 97.7 3.4E-06 1.2E-10 91.3 -2.1 66 150-218 19-96 (252)
327 2j41_A Guanylate kinase; GMP, 97.6 1.2E-05 4.3E-10 83.6 1.6 29 851-879 2-30 (207)
328 3nwj_A ATSK2; P loop, shikimat 97.6 3E-06 1E-10 91.3 -3.6 39 840-878 30-71 (250)
329 2dhr_A FTSH; AAA+ protein, hex 97.6 1.1E-07 3.8E-12 112.5 -16.3 75 843-923 54-132 (499)
330 1svm_A Large T antigen; AAA+ f 97.6 1.6E-05 5.5E-10 90.7 2.0 44 148-197 156-199 (377)
331 1kgd_A CASK, peripheral plasma 97.6 3E-05 1E-09 79.2 3.8 38 159-198 3-40 (180)
332 2dy1_A Elongation factor G; tr 97.6 1.9E-05 6.5E-10 97.3 2.5 133 849-1030 3-138 (665)
333 3bh0_A DNAB-like replicative h 97.6 0.00013 4.5E-09 81.5 8.9 38 148-185 55-92 (315)
334 2vp4_A Deoxynucleoside kinase; 97.5 1.9E-05 6.6E-10 84.1 1.5 42 154-202 13-54 (230)
335 4e22_A Cytidylate kinase; P-lo 97.5 9.6E-06 3.3E-10 87.8 -0.9 57 853-911 25-96 (252)
336 1zu4_A FTSY; GTPase, signal re 97.5 1.3E-05 4.6E-10 89.5 0.2 77 845-923 95-184 (320)
337 3kta_A Chromosome segregation 97.5 3.5E-05 1.2E-09 78.6 3.0 32 846-878 18-49 (182)
338 3vaa_A Shikimate kinase, SK; s 97.5 3.8E-05 1.3E-09 79.8 3.1 38 841-878 11-48 (199)
339 3tqc_A Pantothenate kinase; bi 97.5 3.4E-05 1.2E-09 86.0 2.6 57 149-222 74-136 (321)
340 1jjv_A Dephospho-COA kinase; P 97.5 2E-05 6.9E-10 82.2 0.5 71 970-1044 61-132 (206)
341 1fnn_A CDC6P, cell division co 97.4 0.00057 2E-08 78.2 12.6 44 985-1029 124-170 (389)
342 1knq_A Gluconate kinase; ALFA/ 97.4 6E-05 2E-09 76.3 3.5 35 159-200 6-40 (175)
343 3tau_A Guanylate kinase, GMP k 97.4 6.7E-05 2.3E-09 78.5 3.8 29 159-187 6-34 (208)
344 1rz3_A Hypothetical protein rb 97.4 4.5E-05 1.6E-09 79.3 2.3 40 158-200 19-58 (201)
345 3t34_A Dynamin-related protein 97.4 0.00021 7.3E-09 81.4 8.1 57 969-1026 155-212 (360)
346 2vp4_A Deoxynucleoside kinase; 97.4 5E-05 1.7E-09 80.8 2.6 39 851-895 16-54 (230)
347 2qt1_A Nicotinamide riboside k 97.4 9.2E-05 3.2E-09 77.2 4.3 45 156-223 16-60 (207)
348 3a00_A Guanylate kinase, GMP k 97.4 4.6E-05 1.6E-09 78.2 2.0 26 855-880 1-26 (186)
349 1ega_A Protein (GTP-binding pr 97.4 8.7E-05 3E-09 82.4 4.1 64 969-1040 101-170 (301)
350 1v5w_A DMC1, meiotic recombina 97.4 0.0008 2.7E-08 76.0 12.0 28 850-877 117-144 (343)
351 3ney_A 55 kDa erythrocyte memb 97.3 8.5E-05 2.9E-09 76.7 3.3 29 158-186 16-44 (197)
352 1kgd_A CASK, peripheral plasma 97.3 7.1E-05 2.4E-09 76.4 2.7 37 854-891 4-40 (180)
353 1jjv_A Dephospho-COA kinase; P 97.3 6.7E-05 2.3E-09 78.2 2.5 70 307-382 60-131 (206)
354 3b9p_A CG5977-PA, isoform A; A 97.3 0.0019 6.6E-08 71.1 14.0 27 159-185 52-78 (297)
355 3t34_A Dynamin-related protein 97.3 0.00035 1.2E-08 79.6 7.9 34 148-184 24-57 (360)
356 3uie_A Adenylyl-sulfate kinase 97.3 2.7E-05 9.3E-10 80.9 -1.5 47 846-895 16-64 (200)
357 2dy1_A Elongation factor G; tr 97.2 7.7E-05 2.6E-09 91.9 1.8 46 155-202 3-48 (665)
358 2z43_A DNA repair and recombin 97.2 0.00085 2.9E-08 75.2 10.1 55 973-1027 187-257 (324)
359 2e87_A Hypothetical protein PH 97.2 0.00049 1.7E-08 78.3 8.3 56 306-364 231-287 (357)
360 2z43_A DNA repair and recombin 97.2 0.0019 6.4E-08 72.4 12.8 36 150-185 95-131 (324)
361 3b9p_A CG5977-PA, isoform A; A 97.2 0.0014 4.9E-08 72.1 11.7 71 970-1040 97-184 (297)
362 1kag_A SKI, shikimate kinase I 97.2 0.00016 5.5E-09 72.8 3.5 27 160-186 3-29 (173)
363 1v5w_A DMC1, meiotic recombina 97.2 0.0015 5.1E-08 73.8 11.7 35 150-184 110-145 (343)
364 3cr8_A Sulfate adenylyltranfer 97.2 0.0001 3.6E-09 88.1 2.3 42 157-201 365-408 (552)
365 3bh0_A DNAB-like replicative h 97.1 0.00034 1.2E-08 78.1 5.7 130 844-1026 57-189 (315)
366 1fnn_A CDC6P, cell division co 97.1 0.003 1E-07 72.1 13.7 28 160-187 41-70 (389)
367 2z4s_A Chromosomal replication 97.1 0.00028 9.5E-09 82.6 4.7 68 323-391 193-262 (440)
368 3tau_A Guanylate kinase, GMP k 97.1 0.00019 6.6E-09 75.0 2.7 28 853-880 6-33 (208)
369 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.0003 1E-08 69.4 3.8 32 153-185 16-47 (149)
370 1svm_A Large T antigen; AAA+ f 97.0 6.7E-05 2.3E-09 85.6 -1.1 142 843-997 157-312 (377)
371 1f2t_A RAD50 ABC-ATPase; DNA d 97.0 0.0003 1E-08 69.4 3.1 28 848-876 17-44 (149)
372 2p67_A LAO/AO transport system 96.9 0.00015 5.2E-09 82.0 0.6 47 148-197 43-89 (341)
373 4fcw_A Chaperone protein CLPB; 96.9 0.0044 1.5E-07 68.6 12.0 28 160-187 46-73 (311)
374 4eaq_A DTMP kinase, thymidylat 96.9 0.00049 1.7E-08 73.1 3.9 37 150-186 12-51 (229)
375 2z4s_A Chromosomal replication 96.9 0.00065 2.2E-08 79.5 5.4 71 985-1056 193-265 (440)
376 1rz3_A Hypothetical protein rb 96.9 0.00019 6.5E-09 74.6 0.5 41 852-894 19-59 (201)
377 1cke_A CK, MSSA, protein (cyti 96.8 0.0002 6.7E-09 75.7 0.4 37 161-197 5-41 (227)
378 3ney_A 55 kDa erythrocyte memb 96.8 0.00038 1.3E-08 71.8 2.5 27 853-879 17-43 (197)
379 3kl4_A SRP54, signal recogniti 96.8 0.002 7E-08 74.4 8.8 28 160-187 96-123 (433)
380 2www_A Methylmalonic aciduria 96.8 0.00041 1.4E-08 78.6 2.8 40 159-201 72-111 (349)
381 2qby_A CDC6 homolog 1, cell di 96.8 0.00032 1.1E-08 80.1 1.7 26 853-878 43-68 (386)
382 1knq_A Gluconate kinase; ALFA/ 96.8 0.0005 1.7E-08 69.4 2.8 37 853-895 6-42 (175)
383 3m6a_A ATP-dependent protease 96.8 0.00042 1.4E-08 83.3 2.5 47 149-199 97-143 (543)
384 3kl4_A SRP54, signal recogniti 96.7 0.0022 7.5E-08 74.2 8.1 25 854-878 96-120 (433)
385 3tqc_A Pantothenate kinase; bi 96.7 6.4E-05 2.2E-09 83.7 -4.6 38 842-879 73-116 (321)
386 1ypw_A Transitional endoplasmi 96.7 0.001 3.4E-08 83.8 5.5 29 851-879 234-262 (806)
387 1m7g_A Adenylylsulfate kinase; 96.7 0.0005 1.7E-08 71.9 1.9 41 157-200 21-63 (211)
388 1kag_A SKI, shikimate kinase I 96.6 0.00057 2E-08 68.7 2.1 26 854-879 3-28 (173)
389 2pez_A Bifunctional 3'-phospho 96.6 0.0011 3.6E-08 67.3 3.8 28 159-186 3-30 (179)
390 3cr8_A Sulfate adenylyltranfer 96.6 0.00032 1.1E-08 83.9 -0.1 42 851-894 365-408 (552)
391 2qt1_A Nicotinamide riboside k 96.6 0.00082 2.8E-08 69.9 2.9 29 851-879 17-45 (207)
392 2gj8_A MNME, tRNA modification 96.5 0.0022 7.6E-08 64.4 5.5 27 853-879 2-28 (172)
393 3cf0_A Transitional endoplasmi 96.5 0.0022 7.6E-08 70.9 6.0 28 852-879 46-73 (301)
394 2gj8_A MNME, tRNA modification 96.5 0.002 6.7E-08 64.8 5.1 27 159-185 2-28 (172)
395 1mky_A Probable GTP-binding pr 96.5 0.0019 6.5E-08 75.6 5.5 71 162-232 181-263 (439)
396 2qor_A Guanylate kinase; phosp 96.5 0.0011 3.8E-08 68.8 3.2 29 158-186 9-37 (204)
397 3lxx_A GTPase IMAP family memb 96.5 0.014 4.9E-07 61.9 12.0 42 985-1026 111-154 (239)
398 1np6_A Molybdopterin-guanine d 96.5 0.0017 5.8E-08 65.7 4.3 40 162-201 7-46 (174)
399 2qby_A CDC6 homolog 1, cell di 96.5 0.00085 2.9E-08 76.5 2.3 28 159-186 43-70 (386)
400 3qks_A DNA double-strand break 96.5 0.0015 5E-08 68.0 3.8 32 153-185 16-47 (203)
401 1y63_A LMAJ004144AAA protein; 96.4 0.0014 4.9E-08 66.7 3.6 32 153-184 2-33 (184)
402 2ga8_A Hypothetical 39.9 kDa p 96.4 0.00062 2.1E-08 76.2 0.5 37 150-186 11-49 (359)
403 2ffh_A Protein (FFH); SRP54, s 96.4 0.0032 1.1E-07 72.7 6.5 44 152-200 91-134 (425)
404 3qks_A DNA double-strand break 96.3 0.0015 5.1E-08 67.9 3.1 28 848-876 17-44 (203)
405 2yvu_A Probable adenylyl-sulfa 96.3 0.0016 5.4E-08 66.4 3.1 30 158-187 10-39 (186)
406 3llm_A ATP-dependent RNA helic 96.3 0.0013 4.5E-08 69.9 2.5 67 308-377 162-229 (235)
407 1m2o_B GTP-binding protein SAR 96.3 0.0024 8.4E-08 65.2 4.4 35 149-184 12-46 (190)
408 3lxx_A GTPase IMAP family memb 96.3 0.023 7.9E-07 60.2 12.2 24 163-186 31-54 (239)
409 1m2o_B GTP-binding protein SAR 96.3 0.003 1E-07 64.5 4.8 50 843-893 12-67 (190)
410 3h4m_A Proteasome-activating n 96.3 0.015 5.1E-07 63.4 10.8 29 158-186 48-76 (285)
411 2p5t_B PEZT; postsegregational 96.3 0.0016 5.3E-08 70.3 2.7 39 157-200 28-66 (253)
412 1j8m_F SRP54, signal recogniti 96.2 0.0033 1.1E-07 69.3 5.4 44 152-199 89-133 (297)
413 3llm_A ATP-dependent RNA helic 96.2 0.0012 4E-08 70.4 1.6 25 853-877 74-98 (235)
414 3bgw_A DNAB-like replicative h 96.2 0.023 7.9E-07 66.2 12.8 39 147-185 183-221 (444)
415 2q6t_A DNAB replication FORK h 96.2 0.0029 9.9E-08 74.1 5.1 75 968-1044 292-397 (444)
416 1u94_A RECA protein, recombina 96.2 0.05 1.7E-06 61.4 15.1 30 156-185 58-87 (356)
417 1l8q_A Chromosomal replication 96.2 0.0062 2.1E-07 68.0 7.3 27 160-186 36-62 (324)
418 4eaq_A DTMP kinase, thymidylat 96.2 0.0021 7.1E-08 68.2 3.1 35 845-879 13-50 (229)
419 2p67_A LAO/AO transport system 96.2 0.0003 1E-08 79.5 -3.7 37 842-878 43-79 (341)
420 1f6b_A SAR1; gtpases, N-termin 96.1 0.0012 4.3E-08 68.0 1.2 34 149-183 14-47 (198)
421 2q6t_A DNAB replication FORK h 96.1 0.019 6.3E-07 67.2 10.9 38 148-185 187-224 (444)
422 2www_A Methylmalonic aciduria 96.0 0.0013 4.6E-08 74.3 0.9 26 853-878 72-97 (349)
423 1lv7_A FTSH; alpha/beta domain 96.0 0.0039 1.3E-07 67.1 4.5 45 150-201 36-80 (257)
424 3cm0_A Adenylate kinase; ATP-b 96.0 0.0032 1.1E-07 63.9 3.6 27 159-185 2-28 (186)
425 3ice_A Transcription terminati 96.0 0.0023 7.8E-08 72.0 2.5 33 153-185 166-198 (422)
426 3t61_A Gluconokinase; PSI-biol 96.0 0.003 1E-07 65.3 3.3 25 161-185 18-42 (202)
427 2i1q_A DNA repair and recombin 96.0 0.019 6.4E-07 64.1 10.0 28 850-877 93-120 (322)
428 1u94_A RECA protein, recombina 96.0 0.013 4.3E-07 66.3 8.6 27 851-877 59-85 (356)
429 2ohf_A Protein OLA1, GTP-bindi 96.0 0.0034 1.2E-07 71.6 3.8 31 154-184 15-45 (396)
430 2pez_A Bifunctional 3'-phospho 96.0 0.0029 9.8E-08 64.1 2.8 39 853-894 3-43 (179)
431 3ice_A Transcription terminati 95.9 0.0015 5E-08 73.5 0.5 32 847-878 166-197 (422)
432 3kb2_A SPBC2 prophage-derived 95.9 0.0037 1.3E-07 62.4 3.5 24 163-186 3-26 (173)
433 1mky_A Probable GTP-binding pr 95.9 0.0059 2E-07 71.3 5.5 69 856-924 181-262 (439)
434 3m6a_A ATP-dependent protease 95.9 0.0014 4.9E-08 78.6 0.2 49 843-894 97-145 (543)
435 1qhx_A CPT, protein (chloramph 95.9 0.0043 1.5E-07 62.4 3.7 26 161-186 3-28 (178)
436 2b8t_A Thymidine kinase; deoxy 95.8 0.043 1.5E-06 57.6 11.4 53 324-382 89-150 (223)
437 1cke_A CK, MSSA, protein (cyti 95.8 0.003 1E-07 66.4 2.5 57 855-911 5-74 (227)
438 1l8q_A Chromosomal replication 95.8 0.008 2.7E-07 67.0 6.0 45 984-1028 96-141 (324)
439 2if2_A Dephospho-COA kinase; a 95.8 0.0037 1.3E-07 64.6 3.0 21 163-183 3-23 (204)
440 2qag_A Septin-2, protein NEDD5 95.8 0.00083 2.8E-08 76.4 -2.2 31 148-184 30-60 (361)
441 1sxj_C Activator 1 40 kDa subu 95.8 0.0019 6.5E-08 72.8 0.5 40 148-187 31-72 (340)
442 2qag_A Septin-2, protein NEDD5 95.7 0.00053 1.8E-08 78.0 -4.1 33 841-879 29-61 (361)
443 1y63_A LMAJ004144AAA protein; 95.7 0.0039 1.3E-07 63.5 2.7 32 847-878 2-33 (184)
444 3h4m_A Proteasome-activating n 95.7 0.012 3.9E-07 64.3 6.6 26 853-878 49-74 (285)
445 3r20_A Cytidylate kinase; stru 95.7 0.0051 1.7E-07 65.1 3.6 25 162-186 10-34 (233)
446 2qor_A Guanylate kinase; phosp 95.7 0.0038 1.3E-07 64.7 2.5 28 852-879 9-36 (204)
447 1q3t_A Cytidylate kinase; nucl 95.7 0.0057 1.9E-07 65.0 3.7 29 158-186 13-41 (236)
448 1ega_A Protein (GTP-binding pr 95.6 0.0041 1.4E-07 68.8 2.6 64 307-377 101-168 (301)
449 1f6b_A SAR1; gtpases, N-termin 95.6 0.0023 7.8E-08 66.0 0.4 48 844-892 15-68 (198)
450 2rhm_A Putative kinase; P-loop 95.6 0.0058 2E-07 62.3 3.4 27 159-185 3-29 (193)
451 3d8b_A Fidgetin-like protein 1 95.6 0.09 3.1E-06 59.4 13.6 27 159-185 115-141 (357)
452 2ze6_A Isopentenyl transferase 95.5 0.007 2.4E-07 65.1 3.7 25 162-186 2-26 (253)
453 2if2_A Dephospho-COA kinase; a 95.5 0.0049 1.7E-07 63.7 2.3 21 857-877 3-23 (204)
454 2wji_A Ferrous iron transport 95.4 0.0065 2.2E-07 60.3 3.1 23 163-185 5-27 (165)
455 1gvn_B Zeta; postsegregational 95.4 0.0084 2.9E-07 65.8 4.3 27 159-185 31-57 (287)
456 3cf0_A Transitional endoplasmi 95.4 0.0066 2.2E-07 67.1 3.4 30 157-186 45-74 (301)
457 1kht_A Adenylate kinase; phosp 95.4 0.0074 2.5E-07 61.3 3.5 26 161-186 3-28 (192)
458 2wjg_A FEOB, ferrous iron tran 95.4 0.012 4.2E-07 59.3 5.2 22 857-878 9-30 (188)
459 2b8t_A Thymidine kinase; deoxy 95.4 0.015 5.3E-07 61.0 6.0 52 986-1042 89-149 (223)
460 3trf_A Shikimate kinase, SK; a 95.4 0.0081 2.8E-07 60.9 3.6 27 160-186 4-30 (185)
461 1m7g_A Adenylylsulfate kinase; 95.3 0.0034 1.1E-07 65.5 0.6 40 852-893 22-63 (211)
462 2plr_A DTMP kinase, probable t 95.3 0.0095 3.2E-07 61.6 4.0 28 160-187 3-30 (213)
463 2wji_A Ferrous iron transport 95.3 0.0074 2.5E-07 59.9 3.0 23 857-879 5-27 (165)
464 3d8b_A Fidgetin-like protein 1 95.3 0.062 2.1E-06 60.7 11.0 25 854-878 116-140 (357)
465 2qp9_X Vacuolar protein sortin 95.3 0.061 2.1E-06 60.8 10.8 28 158-185 81-108 (355)
466 1via_A Shikimate kinase; struc 95.3 0.0087 3E-07 60.2 3.3 24 163-186 6-29 (175)
467 2jaq_A Deoxyguanosine kinase; 95.2 0.0092 3.1E-07 61.3 3.5 24 163-186 2-25 (205)
468 2v54_A DTMP kinase, thymidylat 95.1 0.0098 3.4E-07 61.2 3.4 27 159-185 2-28 (204)
469 3iij_A Coilin-interacting nucl 95.1 0.0098 3.3E-07 60.1 3.3 27 159-185 9-35 (180)
470 2v1u_A Cell division control p 95.1 0.024 8.3E-07 64.3 6.9 25 854-878 43-67 (387)
471 2c95_A Adenylate kinase 1; tra 95.1 0.01 3.5E-07 60.6 3.4 27 159-185 7-33 (196)
472 1ex7_A Guanylate kinase; subst 95.1 0.0096 3.3E-07 60.7 3.0 25 162-186 2-26 (186)
473 1xjc_A MOBB protein homolog; s 95.0 0.012 4.3E-07 58.8 3.7 26 162-187 5-30 (169)
474 2bwj_A Adenylate kinase 5; pho 95.0 0.0055 1.9E-07 62.8 1.1 29 158-186 9-37 (199)
475 1ypw_A Transitional endoplasmi 95.0 0.0091 3.1E-07 75.1 3.2 32 156-187 233-264 (806)
476 1aky_A Adenylate kinase; ATP:A 95.0 0.013 4.3E-07 61.4 3.8 28 159-186 2-29 (220)
477 1np6_A Molybdopterin-guanine d 95.0 0.011 3.7E-07 59.7 3.0 38 856-893 7-45 (174)
478 1q57_A DNA primase/helicase; d 95.0 0.29 1E-05 57.9 16.0 38 148-185 229-266 (503)
479 2ohf_A Protein OLA1, GTP-bindi 95.0 0.0089 3.1E-07 68.2 2.7 43 851-893 18-69 (396)
480 3lw7_A Adenylate kinase relate 94.9 0.012 3.9E-07 58.7 3.1 19 163-181 3-21 (179)
481 2wjg_A FEOB, ferrous iron tran 94.9 0.012 4.1E-07 59.4 3.2 22 163-184 9-30 (188)
482 2wwf_A Thymidilate kinase, put 94.9 0.013 4.4E-07 60.8 3.4 28 159-186 8-35 (212)
483 2zej_A Dardarin, leucine-rich 94.9 0.01 3.5E-07 60.0 2.6 22 163-184 4-25 (184)
484 1ly1_A Polynucleotide kinase; 94.9 0.013 4.5E-07 58.8 3.4 22 162-183 3-24 (181)
485 2ga8_A Hypothetical 39.9 kDa p 94.9 0.0024 8.3E-08 71.4 -2.3 35 844-878 11-47 (359)
486 2yvu_A Probable adenylyl-sulfa 94.8 0.012 4.2E-07 59.7 3.1 27 853-879 11-37 (186)
487 1tev_A UMP-CMP kinase; ploop, 94.8 0.016 5.3E-07 59.0 3.8 26 160-185 2-27 (196)
488 3cmw_A Protein RECA, recombina 94.8 0.043 1.5E-06 73.1 8.8 30 157-186 728-757 (1706)
489 2vli_A Antibiotic resistance p 94.8 0.012 4.2E-07 59.3 3.0 27 160-186 4-30 (183)
490 3t61_A Gluconokinase; PSI-biol 94.8 0.0091 3.1E-07 61.6 1.9 24 855-878 18-41 (202)
491 3cm0_A Adenylate kinase; ATP-b 94.8 0.012 4.1E-07 59.6 2.7 25 853-877 2-26 (186)
492 2zej_A Dardarin, leucine-rich 94.7 0.013 4.5E-07 59.2 3.0 22 857-878 4-25 (184)
493 1vht_A Dephospho-COA kinase; s 94.7 0.016 5.4E-07 60.5 3.7 24 160-183 3-26 (218)
494 1nn5_A Similar to deoxythymidy 94.7 0.015 5E-07 60.4 3.3 28 159-186 7-34 (215)
495 2ffh_A Protein (FFH); SRP54, s 94.7 0.0061 2.1E-07 70.3 0.4 46 846-895 91-136 (425)
496 1gtv_A TMK, thymidylate kinase 94.6 0.0075 2.6E-07 62.6 0.9 25 163-187 2-26 (214)
497 1nks_A Adenylate kinase; therm 94.6 0.016 5.4E-07 58.8 3.3 24 163-186 3-26 (194)
498 1xx6_A Thymidine kinase; NESG, 94.6 0.076 2.6E-06 54.3 8.3 53 324-382 81-142 (191)
499 2j9r_A Thymidine kinase; TK1, 94.6 0.17 5.9E-06 52.3 10.9 54 324-383 101-163 (214)
500 3umf_A Adenylate kinase; rossm 94.5 0.017 6E-07 60.3 3.4 29 158-186 26-54 (217)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-73 Score=751.84 Aligned_cols=214 Identities=26% Similarity=0.392 Sum_probs=177.8
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.|+|++|.++.. ++.++|+||||+|+|||++||||+||||||||+++|.|... +.+|+|.|||.++
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di 1143 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEI 1143 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEET
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc--CCCCEEEECCEEh
Confidence 57788887776321 23469999999999999999999999999999999999876 5689999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
+. ..+|++++||||+|.+|.+ |++||+.|+.. |.+. .++.++++++..++.+. .|..++..
T Consensus 1144 ~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~----sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~- 1214 (1321)
T 4f4c_A 1144 KTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSV----TMAQVEEAARLANIHNFIAELPEGFETRVGDR- 1214 (1321)
T ss_dssp TTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTS----CHHHHHHHHHHTTCHHHHHTSTTTTCSEETTT-
T ss_pred hhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCC----CHHHHHHHHHHhCChHHHHcCcCCCCCEecCC-
Confidence 64 5678899999999999866 99999987631 2222 23457888888887543 34445543
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||+||||||+++|+||+||||||+||+++.+.|++.|+++. +|+|+|+|+|+++ ....||+|+||+ +
T Consensus 1215 G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~ 1290 (1321)
T 4f4c_A 1215 GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-N 1290 (1321)
T ss_dssp SCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-S
T ss_pred CcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHH--HHHhCCEEEEEE-C
Confidence 35799999999999999999999999999999999999999999999864 6999999999987 467899999998 5
Q ss_pred cEEEEecCC
Q 001400 1046 GELIYAGPL 1054 (1085)
Q Consensus 1046 G~~~~~g~~ 1054 (1085)
|++++.|+.
T Consensus 1291 G~IvE~Gth 1299 (1321)
T 4f4c_A 1291 GTIIEKGTH 1299 (1321)
T ss_dssp SSEEEEECH
T ss_pred CEEEEECCH
Confidence 789999974
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.8e-67 Score=692.71 Aligned_cols=215 Identities=22% Similarity=0.357 Sum_probs=170.1
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++.. ++.++|+||||+|++||++||+|+||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~--p~~G~I~i~g~~i 1097 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD--PMAGSVFLDGKEI 1097 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC--CSEEEEESSSSCT
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCCEEEECCEEc
Confidence 46677776655311 12358999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
+. ...++.+|||+|++.++ ..||+||+.++...+ .... +.++++++..++.+. .+..++..
T Consensus 1098 ~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~~---~~~~----~~i~~~~~~~~~~~~i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1098 KQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNSR---VVSY----EEIVRAAKEANIHQFIDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp TSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSSC---CCCH----HHHHHHHHHHTCHHHHSSTTTGGGCBCSTT-
T ss_pred ccCCHHHHHhceEEECCCCccc-cccHHHHHhccCCCC---CCCH----HHHHHHHHHhCcHHHHHhCccccccccCCC-
Confidence 53 34677899999999876 469999998753211 1111 234455555555433 23334433
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+|||||||||+.+++.|++.|++. .+|+|||++|||++. + ..||++++|+ +
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~-~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQ-N 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEE-T
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEE-C
Confidence 3579999999999999999999999999999999999999999999985 469999999999873 4 6699999998 5
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 1245 G~i~~~g~~~ 1254 (1284)
T 3g5u_A 1245 GKVKEHGTHQ 1254 (1284)
T ss_dssp BEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999998753
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.9e-59 Score=563.16 Aligned_cols=188 Identities=25% Similarity=0.279 Sum_probs=157.5
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ .+.+||++|++...+.+||.|++
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~ 438 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQYIKAEYEGTVYELL 438 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEE----------eeEEEEEecCccCCCCCcHHHHH
Confidence 5789999999999999999999999999999999876 45788865 23589999998777889999988
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+..... ....+.++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 439 ~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~ 506 (607)
T 3bk7_A 439 SKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 506 (607)
T ss_dssp HHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccC-------CCHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHH
Confidence 6531100 011245788999999987776654 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~~~ 1056 (1085)
+..++++|++++ +.|.|||++|||++ .+...+|++++|++ .|+++..|+..+
T Consensus 507 ~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 507 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCHHH
Confidence 999999999986 46999999999986 47778999999973 267777887754
No 4
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.1e-58 Score=555.37 Aligned_cols=188 Identities=26% Similarity=0.297 Sum_probs=155.8
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++||+|++||++||+||||||||||+++|+|... +.+|+|.+ ...+||++|++...+.+||.|++
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~ 368 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQYIKADYEGTVYELL 368 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCeEEEE----------CceEEEEecCCcCCCCCcHHHHH
Confidence 5889999999999999999999999999999999866 45788865 23589999998777889999887
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
........ ...+.++++++.+++.+..+..+ ..|||||||||+|||+|+.+|+||||||||+|||+.+
T Consensus 369 ~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~ 436 (538)
T 1yqt_A 369 SKIDASKL-------NSNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQ 436 (538)
T ss_dssp HHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHH
T ss_pred HhhhccCC-------CHHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHH
Confidence 64311110 01234677888888876665543 4799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEec-CcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKR-GGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~-gG~~~~~g~~~~ 1056 (1085)
+..+++.|+++++ .|.|||++|||++ .+...||++++|++ .|+++..|+..+
T Consensus 437 ~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 437 RLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCHHH
Confidence 9999999999864 5999999999986 47788999999984 267778888754
No 5
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=2.4e-57 Score=544.33 Aligned_cols=202 Identities=23% Similarity=0.238 Sum_probs=161.2
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
.|+++|++|++||++||+||||||||||+++|+|... +.+|+|.+++. .++|++|+....+..||+|++
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~l 351 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQYL 351 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSCC---------CEEEECSSCCCCCSSBHHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCe---------eeEeechhcccccCCCHHHHH
Confidence 4677899999999999999999999999999999876 46899987653 479999987766789999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+....... . ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+|||+.+
T Consensus 352 ~~~~~~~~~-~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~ 420 (538)
T 3ozx_A 352 ENASKDALS-T-----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEE 420 (538)
T ss_dssp HHHCSSTTC-T-----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHH
T ss_pred HHhhhhccc-h-----hHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 864211100 1 1234678888888887766654 5799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecC-cEEEEecCCCCchHHHHHHHHhc
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEVE 1068 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1085)
+..+++.|+++++ .|.|||++|||++ .+...|||+++|+.+ |.....++.......+.+|+..+
T Consensus 421 ~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 421 RYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCChHHHHHHHHHHHhhc
Confidence 9999999999975 5899999999986 477789999999842 34445555443334455565544
No 6
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.4e-56 Score=550.15 Aligned_cols=214 Identities=21% Similarity=0.236 Sum_probs=136.5
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHH---------------------HHHHhhhCCCCc----eeeEEEECCcc
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLL---------------------LALAGRLGHHLQ----VSGKITYNGHG 201 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL---------------------~~L~G~l~~~~~----~~G~i~~~G~~ 201 (1085)
..++|+|||++|++||+++|+||||||||||| ++++|...++.. ..|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 34689999999999999999999999999998 777777666421 25677888765
Q ss_pred CCCCCCCceEEEEccCCC-------------------CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCc
Q 001400 202 FKEFVPPRTSAYVSQQDW-------------------QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDE 262 (1085)
Q Consensus 202 ~~~~~~~~~~~yv~Q~d~-------------------~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 262 (1085)
.... +++.++||+|... .++.+||+||+.+.......... .+.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~----~~~~------~~~--- 175 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKE----AQIA------RLI--- 175 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred hhcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhh----hHHH------HHH---
Confidence 4322 2344556655432 24678999999874321100000 0000 000
Q ss_pred hHHHHHHHhhhcCcchhHHHHHHHHHhCCccc-ccccccCcccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCH
Q 001400 263 DLDIFMKSFALGGQKTSLVVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDS 339 (1085)
Q Consensus 263 d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~ 339 (1085)
..+... ...+++.+||.+. .|..+ ..|||||||||+|||||+.+|+ +|+|||||+|||+
T Consensus 176 ------------~~~~~~-~~~~l~~~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 176 ------------LREIRD-RLGFLQNVGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHH-HHHHHHHTTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred ------------HHHHHH-HHHHHHHcCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH
Confidence 000011 2246889999764 45554 4699999999999999999988 9999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhH
Q 001400 340 STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSV 395 (1085)
Q Consensus 340 ~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~ 395 (1085)
.++.++++.|+++.+. +.+|+.++|+...+ ..||+|++| ++|++++.|+++++
T Consensus 238 ~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~ 296 (670)
T 3ux8_A 238 RDNDRLIATLKSMRDL--GNTLIVVEHDEDTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEV 296 (670)
T ss_dssp GGHHHHHHHHHHHHHT--TCEEEEECCCHHHH-HHCSEEEEECSSSGGGCCSEEEEECHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEEEEeCCHHHH-hhCCEEEEecccccccCCEEEEecCHHHH
Confidence 9999999999998753 45566688888765 569999999 89999999988765
No 7
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=4.1e-56 Score=555.14 Aligned_cols=184 Identities=20% Similarity=0.299 Sum_probs=149.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC-CCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+| |+| +|.+.. ....++|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~---~~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQ---EECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCT---TTSCEEETTCCCCCCCTTSBH
T ss_pred EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC---------CCc--CCCccc---cceeEEEEcccccccccCCcH
Confidence 469999999999999999999999999999999995 222 343321 112478999874 66888999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCcccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1085)
.|++.+ ...+ . ..+++++++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--hhcC--H-------------------------------------HHHHHHHHHHcCCChhhhcCCcc-----
Confidence 999975 1110 0 12367889999994 55666554
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+||+||+.+|++|||||||+|||+.++.++.+.|++ . +++++.++|+..++.+++|+|++|++|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~-g~tvIivSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----C-GITSITISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----S-CSEEEEECSCHHHHHHHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----C-CCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 6999999999999999999999999999999999999999999987 2 4456668899999999999999999999
Q ss_pred EE-EecChhhHH
Q 001400 386 IV-YQGPRVSVL 396 (1085)
Q Consensus 386 iv-~~G~~~~~~ 396 (1085)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred eecCCCCHHHHH
Confidence 97 789876653
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-55 Score=534.88 Aligned_cols=201 Identities=18% Similarity=0.167 Sum_probs=159.5
Q ss_pred EEeeeeeEEEeCC-----eEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001400 843 QLLVNVTGAFRPG-----VLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 843 ~~L~~vs~~i~~G-----e~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
.+++++||++.+| |++||+||||||||||+++|+|... +.+|+. . ....++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~--p~~G~~------~----~~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK--PDEGQD------I----PKLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC--CSBCCC------C----CSCCEEEECSSCCCCCCS
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC--CCCCcC------c----cCCcEEEecccccccCCc
Confidence 4677889988888 7899999999999999999999876 346642 1 124589999987766678
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+|++.... +.. .. ....++++++.+++.+..+..+ .+|||||||||+|||||+.+|+||||||||+
T Consensus 429 tv~e~~~~~~--~~~--~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKKI--RGQ--FL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHHC--SST--TT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred cHHHHHHHHh--hcc--cc---cHHHHHHHHHHcCChhhhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCC
Confidence 9999875422 111 11 1234678899999988777654 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecC-cEEEEecCCCCchHHHHHHHHhc
Q 001400 998 GLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRG-GELIYAGPLGSKSCELIKYFEVE 1068 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~g-G~~~~~g~~~~~~~~~~~~~~~~ 1068 (1085)
|||+.++..++++|+++. +.|.|||++|||++ .+...+||+++|+++ |+++..|+..+.......+.+.+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhhhhHHHHhc
Confidence 999999999999999986 45999999999986 477889999999842 78899998766433333444444
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.9e-42 Score=431.11 Aligned_cols=197 Identities=26% Similarity=0.407 Sum_probs=143.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHH---------hhhhCCCC--C--Ceee------eEEEEcCccCChhc-----
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLM---------DVLAGRKT--G--GIIE------GDIYISGYPKRQET----- 899 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------~~l~g~~~--~--~~~~------G~i~i~g~~~~~~~----- 899 (1085)
.|+|||++|++|+++||+|+||||||||+ +.+.+... + .... +-+.+++.++....
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 47899999999999999999999999997 33333211 1 0122 33555554421100
Q ss_pred ---------------------------------------ccceEEEEccCCCCCC-------------------------
Q 001400 900 ---------------------------------------FARISGYCEQNDIHSP------------------------- 915 (1085)
Q Consensus 900 ---------------------------------------~~~~~gy~~Q~~~~~~------------------------- 915 (1085)
..+..||+.++..++|
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 0012467777655544
Q ss_pred -------CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC-
Q 001400 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP- 987 (1085)
Q Consensus 916 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p- 987 (1085)
.+||.|++.|.... .....+.++++.++|.... .+.+ +.+|||||||||+|||||+++|
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p~ 825 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRDT 825 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCCC
T ss_pred CCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhh---ccCC-ccCCCHHHHHHHHHHHHHhhCCC
Confidence 36788888764311 1123456888888886432 1222 3579999999999999999876
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 988 --SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 988 --~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
+||||||||+|||+.+.+.+++.|++++++|.|||+|+||++ ..+.||++++|. +||++++.|+..
T Consensus 826 ~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~--~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 826 GRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD--VIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp SSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH--HHHhCCEEEEecCCCCCCCCEEEEEcCHH
Confidence 799999999999999999999999999888999999999975 557799999993 479999999864
No 10
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=6.4e-42 Score=387.04 Aligned_cols=203 Identities=25% Similarity=0.315 Sum_probs=178.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cccceEEEEccCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TFARISGYCEQNDIHS 914 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~~~~~gy~~Q~~~~~ 914 (1085)
...+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~--p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~ 117 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLL 117 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccC
Confidence 3679999999999999999999999999999999999876 5699999999986431 2457799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+.+||+||+.|+...+. ....+.++.++++++.++|.+..+... .+|||||||||+|||||+.+|+||||||
T Consensus 118 ~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~-----~~LSGGqkQRVaIArAL~~~P~lLLlDE 189 (366)
T 3tui_C 118 SSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYP-----SNLSGGQKQRVAIARALASNPKVLLCDQ 189 (366)
T ss_dssp TTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCT-----TTSCHHHHHHHHHHHHTTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999999999865542 234556677899999999988777653 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+.++..++++|+++.+ .|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 190 PTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~-G~iv~~g~~~ 249 (366)
T 3tui_C 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISN-GELIEQDTVS 249 (366)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEECCBHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999975 4999999999986 47788999999985 7999999764
No 11
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.2e-42 Score=385.74 Aligned_cols=207 Identities=21% Similarity=0.316 Sum_probs=180.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC------CceEEEEccCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~------~~~~~yv~Q~d~~ 220 (1085)
...+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++..... ++.+|||+|++.+
T Consensus 40 ~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~---~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l 116 (366)
T 3tui_C 40 TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT---EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 116 (366)
T ss_dssp EEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC
T ss_pred CeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc
Confidence 467999999999999999999999999999999999999886 9999999999876532 3579999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+.+..+... .+...+++++|+.+||.+.++..+
T Consensus 117 ~~~~TV~env~~~~~~~~~~~----------------------------------~~~~~~v~~lL~~vgL~~~~~~~~- 161 (366)
T 3tui_C 117 LSSRTVFGNVALPLELDNTPK----------------------------------DEVKRRVTELLSLVGLGDKHDSYP- 161 (366)
T ss_dssp CTTSCHHHHHHHHHHHSCCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCT-
T ss_pred CCCCCHHHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhcCCh-
Confidence 999999999999866543210 011235888999999998877655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.+|++.|+++.+..+ ++|+.++|+..++..+||+|++
T Consensus 162 ----~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g-~Tii~vTHdl~~~~~~aDrv~v 236 (366)
T 3tui_C 162 ----SNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLG-LTILLITHEMDVVKRICDCVAV 236 (366)
T ss_dssp ----TTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSC-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEecCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999976544 5566688999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|++++.|+++++.
T Consensus 237 l~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 237 ISNGELIEQDTVSEVF 252 (366)
T ss_dssp EETTEEEECCBHHHHH
T ss_pred EECCEEEEEcCHHHHH
Confidence 9999999999998875
No 12
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.1e-41 Score=367.68 Aligned_cols=204 Identities=25% Similarity=0.390 Sum_probs=173.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c----ccceEEEEccCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T----FARISGYCEQNDIHS 914 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~----~~~~~gy~~Q~~~~~ 914 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++... . .++.+||++|++.++
T Consensus 18 ~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~ 95 (235)
T 3tif_A 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK--PTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI 95 (235)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCC
T ss_pred eeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccC
Confidence 579999999999999999999999999999999999876 5699999999876431 1 234699999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-GALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+||+||+.++...+........+..+.+.++++.+++.+.. +.. +.+||||||||++|||||+.+|++||||
T Consensus 96 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGq~QRv~iAral~~~p~llllD 170 (235)
T 3tif_A 96 PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHK-----PNQLSGGQQQRVAIARALANNPPIILAD 170 (235)
T ss_dssp TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCC-----hhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 9999999999876543222233455566788999999997643 443 3579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+++.|+++.++ |+|||++|||++ ..+.||++++|++ |+++..++..
T Consensus 171 EPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~--~~~~~d~i~~l~~-G~i~~~~~~~ 230 (235)
T 3tif_A 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN--VARFGERIIYLKD-GEVEREEKLR 230 (235)
T ss_dssp STTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH--HHTTSSEEEEEET-TEEEEEEECC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH--HHHhCCEEEEEEC-CEEEEEcChh
Confidence 999999999999999999999765 999999999975 4578999999985 7899888764
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9e-42 Score=388.39 Aligned_cols=212 Identities=26% Similarity=0.364 Sum_probs=184.7
Q ss_pred cccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCC
Q 001400 833 KQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQND 911 (1085)
Q Consensus 833 ~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~ 911 (1085)
+++.+.+++..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... ..++.+||++|++
T Consensus 7 ~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~ 84 (381)
T 3rlf_A 7 QNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET--ITSGDLFIGEKRMNDTPPAERGVGMVFQSY 84 (381)
T ss_dssp EEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSCEEEECTTC
T ss_pred EeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC--CCCeEEEECCEECCCCCHHHCCEEEEecCC
Confidence 344445567889999999999999999999999999999999999877 5699999999986532 3356799999999
Q ss_pred CCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 912 IHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
.++|.+||+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|+|||
T Consensus 85 ~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p-----~~LSGGqrQRVaiArAL~~~P~lLL 156 (381)
T 3rlf_A 85 ALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKP-----KALSGGQRQRVAIGRTLVAEPSVFL 156 (381)
T ss_dssp CCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred cCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCh-----hHCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999876542 344556677899999999998877654 5899999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||||+||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..+
T Consensus 157 LDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~~ 220 (381)
T 3rlf_A 157 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDA-GRVAQVGKPLE 220 (381)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEEC-CEEEEEeCHHH
Confidence 99999999999999999999999755 999999999986 57888999999985 79999987643
No 14
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=6e-42 Score=387.39 Aligned_cols=213 Identities=24% Similarity=0.379 Sum_probs=182.3
Q ss_pred ccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC----Ch-hcccceEEE
Q 001400 832 LKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK----RQ-ETFARISGY 906 (1085)
Q Consensus 832 ~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~----~~-~~~~~~~gy 906 (1085)
++++++.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++ .. ...++.+||
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~--p~~G~I~i~G~~i~~~~~~~~~~~r~ig~ 84 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ--PDSGEISLSGKTIFSKNTNLPVRERRLGY 84 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEESSSCBCCGGGSCCEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC--CCCcEEEECCEECcccccccchhhCCEEE
Confidence 3444445567889999999999999999999999999999999999877 5699999999875 21 234577999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+
T Consensus 85 vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRValArAL~~~ 156 (359)
T 3fvq_A 85 LVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYP-----HELSGGQQQRAALARALAPD 156 (359)
T ss_dssp ECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTC
T ss_pred EeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcC
Confidence 9999999999999999999765432 233455667899999999998887754 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+||||||||||||+..+..+++.|+++. +.|.|||++|||++ ++...|||+++|++ |+++..|+..+
T Consensus 157 P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~-G~i~~~g~~~e 225 (359)
T 3fvq_A 157 PELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQ-GRILQTASPHE 225 (359)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEET-TEEEEEECHHH
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEEC-CEEEEEeCHHH
Confidence 99999999999999999999999888775 46999999999986 57788999999985 79999997643
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=2e-41 Score=370.44 Aligned_cols=207 Identities=29% Similarity=0.377 Sum_probs=176.1
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQND 911 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~ 911 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++
T Consensus 32 ~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~ 109 (263)
T 2olj_A 32 KSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED--FDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRF 109 (263)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEESSSTTCCHHHHHHHEEEECSSC
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCEECCCccccHHHHhCcEEEEeCCC
Confidence 33456789999999999999999999999999999999999876 56899999998763 1 23456799999999
Q ss_pred CCCCCCCHHHHHHHhh-hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 912 IHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 912 ~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
.+++.+||+||+.|+. ..+ ........+.++++++.+++.+..+... .+|||||||||+|||||+.+|++|
T Consensus 110 ~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~lAraL~~~p~ll 181 (263)
T 2olj_A 110 NLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYP-----DSLSGGQAQRVAIARALAMEPKIM 181 (263)
T ss_dssp CCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred cCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHCCCCEE
Confidence 9999999999999864 222 1223344566889999999988776653 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+|||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 182 lLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 244 (263)
T 2olj_A 182 LFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDG-GYIIEEGKPE 244 (263)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999999877999999999986 46678999999985 7898888753
No 16
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.7e-41 Score=363.79 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=174.4
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh------cc-cceEEEEc
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE------TF-ARISGYCE 908 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~------~~-~~~~gy~~ 908 (1085)
++.+++..+|+||||+|++||+++|+||||||||||+++|+|..+ +.+|+|.++|.++... .+ ++.+||++
T Consensus 11 ~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 88 (224)
T 2pcj_A 11 KKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA--PTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVF 88 (224)
T ss_dssp EEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC--CSEEEEEETTEECCSSCHHHHHHHHHHHEEEEC
T ss_pred EEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCCCCHHHHHHHHhCcEEEEe
Confidence 334455789999999999999999999999999999999999876 5689999999876421 12 25799999
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
|++.+++.+||+||+.++...+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+
T Consensus 89 q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~laral~~~p~ 160 (224)
T 2pcj_A 89 QFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKP-----YELSGGEQQRVAIARALANEPI 160 (224)
T ss_dssp SSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHTTTCCS
T ss_pred cCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999998754432 222334566889999999988776654 4799999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
+|||||||+|||+.++..+++.|++++++|.|||++|||++. . +.||++++|++ |++++.|+
T Consensus 161 lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~-~-~~~d~v~~l~~-G~i~~~g~ 222 (224)
T 2pcj_A 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL-A-ELTHRTLEMKD-GKVVGEIT 222 (224)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH-H-TTSSEEEEEET-TEEEEEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEEee
Confidence 999999999999999999999999998779999999999753 4 78999999985 78888875
No 17
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-41 Score=374.12 Aligned_cols=203 Identities=25% Similarity=0.343 Sum_probs=175.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCCC-CCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~~-~~~ 915 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++. . ..+++.+||++|++. .++
T Consensus 21 ~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~--p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 21 THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK--PSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC--CCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 469999999999999999999999999999999999876 56899999999873 2 235678999999873 345
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.|+...+ .....+..+.++++++.+++.++.+... .+|||||||||+|||||+.+|+|||||||
T Consensus 99 ~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGqkQRv~iAraL~~~P~lLlLDEP 170 (275)
T 3gfo_A 99 SASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPT-----HCLSFGQKKRVAIAGVLVMEPKVLILDEP 170 (275)
T ss_dssp SSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHTTCCSEEEEECT
T ss_pred cCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECc
Confidence 789999999986543 2334555677899999999988877654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
|+|||+.++..+++.|+++. ++|.|||++|||++ .+...||++++|++ |++++.|+..+
T Consensus 171 ts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~-G~i~~~g~~~~ 230 (275)
T 3gfo_A 171 TAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKE-GRVILQGNPKE 230 (275)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEET-TEEEEEECHHH
T ss_pred cccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 99999999999999999997 56999999999997 46678999999985 79999998654
No 18
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=2.3e-41 Score=371.00 Aligned_cols=207 Identities=22% Similarity=0.292 Sum_probs=176.4
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------------hcc
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------------ETF 900 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------------~~~ 900 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+
T Consensus 14 ~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1b0u_A 14 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK--PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLL 91 (262)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCEEECTTSSEEESCHHHHHHH
T ss_pred EEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEccccccccccccccChhhHHHH
Confidence 33456789999999999999999999999999999999999876 568999999987641 124
Q ss_pred cceEEEEccCCCCCCCCCHHHHHHHhh-hhcCCCcccHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHH
Q 001400 901 ARISGYCEQNDIHSPGLTVLESLLFSA-WLRLPSEIELETQRAFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLT 978 (1085)
Q Consensus 901 ~~~~gy~~Q~~~~~~~~tv~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~ 978 (1085)
++.+||++|++.+++.+||+||+.++. ..+ ........+.++++++.+++.+. .+... .+|||||||||+
T Consensus 92 ~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~~LSgGq~qRv~ 163 (262)
T 1b0u_A 92 RTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGKYP-----VHLSGGQQQRVS 163 (262)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTSCG-----GGSCHHHHHHHH
T ss_pred hcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcCCc-----ccCCHHHHHHHH
Confidence 567999999999999999999999864 222 12233445668899999999887 66653 479999999999
Q ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 979 IAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 979 iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+.+|+||||||||+|||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 164 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (262)
T 1b0u_A 164 IARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVIFLHQ-GKIEEEGDPE 238 (262)
T ss_dssp HHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 999999999999999999999999999999999999877999999999986 46678999999985 7899888753
No 19
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=100.00 E-value=1e-40 Score=412.74 Aligned_cols=196 Identities=29% Similarity=0.387 Sum_probs=147.1
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh-C-C---------CCCC--eeee------EEEEcCccCChhc-----
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G-R---------KTGG--IIEG------DIYISGYPKRQET----- 899 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g-~---------~~~~--~~~G------~i~i~g~~~~~~~----- 899 (1085)
.|+|||++|++||++||+|+||||||||+++|+ | . ..+. ...| .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 488999999999999999999999999999964 2 1 1111 2234 5888887752100
Q ss_pred -----------------ccceEEEEccCCCCC----------------------C-------------------------
Q 001400 900 -----------------FARISGYCEQNDIHS----------------------P------------------------- 915 (1085)
Q Consensus 900 -----------------~~~~~gy~~Q~~~~~----------------------~------------------------- 915 (1085)
..+..||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 123457777743221 0
Q ss_pred -------CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 916 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+|+.|++.|... ... ...+.++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------IPK---IKRKLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------CHH---HHHHHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------chh---HHHHHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCC
Confidence 3577777765321 111 123467899999976 34443 2579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 988 ---~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
+||||||||+|||+.++..+++.|++++++|.|||++|||++ ..+.||++++|. ++|++++.|+..
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD--VIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999975 457899999994 468999988754
No 20
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=1.4e-41 Score=372.97 Aligned_cols=216 Identities=22% Similarity=0.325 Sum_probs=182.2
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHS 914 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~ 914 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.++
T Consensus 20 ~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~ 97 (266)
T 4g1u_C 20 HVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS--PSHGECHLLGQNLNSWQPKALARTRAVMRQYSELA 97 (266)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC--CSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCC
T ss_pred EeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECCEECCcCCHHHHhheEEEEecCCccC
Confidence 3466789999999999999999999999999999999999876 468999999998653 33556799999999888
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPS 988 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~ 988 (1085)
+.+||+||+.++..... ....++.++++++.+++.++.+... .+|||||||||+|||||+. +|+
T Consensus 98 ~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~QRv~iAraL~~~~~~~~~p~ 167 (266)
T 4g1u_C 98 FPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDY-----RVLSGGEQQRVQLARVLAQLWQPQPTPR 167 (266)
T ss_dssp SCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBG-----GGCCHHHHHHHHHHHHHHHTCCSSCCCE
T ss_pred CCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHhcccccCCCCC
Confidence 89999999998754321 1223456789999999988877654 4799999999999999999 999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC--chHHHHHHH
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS--KSCELIKYF 1065 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~--~~~~~~~~~ 1065 (1085)
||||||||+|||+.++..+++.|+++.++ |.|||++|||++ .+...||++++|++ |++++.|+..+ ....+.++|
T Consensus 168 lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~-G~i~~~g~~~~~~~~~~l~~~~ 245 (266)
T 4g1u_C 168 WLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQ-GKLVACGTPEEVLNAETLTQWY 245 (266)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHHHHCCHHHHHHHC
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEEC-CEEEEEcCHHHHhCcHHHHHHh
Confidence 99999999999999999999999999765 579999999986 46778999999985 79999998754 234556666
Q ss_pred Hh
Q 001400 1066 EV 1067 (1085)
Q Consensus 1066 ~~ 1067 (1085)
..
T Consensus 246 ~~ 247 (266)
T 4g1u_C 246 QA 247 (266)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 21
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4.4e-41 Score=366.68 Aligned_cols=206 Identities=22% Similarity=0.303 Sum_probs=175.9
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh--hcccceEEEEccCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ--ETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~--~~~~~~~gy~~Q~~~~~~ 915 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 24 ~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~ 101 (256)
T 1vpl_A 24 RIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK--PSSGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 101 (256)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred EECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC--CCceEEEECCEECCccHHHHhhcEEEEcCCCCCCC
Confidence 3455789999999999999999999999999999999999876 568999999987643 234567999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+||+||+.+....+. .......+.++++++.+++.+..+... .+||||||||++|||||+.+|+|||||||
T Consensus 102 ~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEP 173 (256)
T 1vpl_A 102 NMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRV-----STYSKGMVRKLLIARALMVNPRLAILDEP 173 (256)
T ss_dssp TSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBG-----GGCCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred CCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 9999999998654332 122333456789999999988777654 47999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+++.|+++.++|+|||++|||++ .+...||++++|++ |++++.|+..
T Consensus 174 ts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 231 (256)
T 1vpl_A 174 TSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHN-GTIVETGTVE 231 (256)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEET-TEEEEEEEHH
T ss_pred ccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEEC-CEEEEecCHH
Confidence 9999999999999999999877999999999976 35567999999985 7888888653
No 22
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=5.1e-41 Score=382.21 Aligned_cols=207 Identities=24% Similarity=0.365 Sum_probs=181.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.+|||+|++.++|.+||
T Consensus 16 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~ltV 92 (381)
T 3rlf_A 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETIT---SGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSV 92 (381)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSCEEEECTTCCCCTTSCH
T ss_pred EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCC---CeEEEECCEECCCCCHHHCCEEEEecCCcCCCCCCH
Confidence 46999999999999999999999999999999999999886 9999999999876543 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~p-----~~ 133 (381)
T 3rlf_A 93 AENMSFGLKLAGAKK----------------------------------EVINQRVNQVAEVLQLAHLLDRKP-----KA 133 (381)
T ss_dssp HHHHTHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTCCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCh-----hH
Confidence 999999876543110 011235888999999998777655 56
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|||||||||||+..+.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~ea~~~aDri~vl~~G~i 212 (381)
T 3rlf_A 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLG-RTMIYVTHDQVEAMTLADKIVVLDAGRV 212 (381)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCC-CEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 5566689999999999999999999999
Q ss_pred EEecChhhHHH
Q 001400 387 VYQGPRVSVLD 397 (1085)
Q Consensus 387 v~~G~~~~~~~ 397 (1085)
+..|+++++..
T Consensus 213 ~~~g~~~~l~~ 223 (381)
T 3rlf_A 213 AQVGKPLELYH 223 (381)
T ss_dssp EEEECHHHHHH
T ss_pred EEEeCHHHHHh
Confidence 99999998753
No 23
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=3.9e-41 Score=380.75 Aligned_cols=207 Identities=22% Similarity=0.351 Sum_probs=178.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC----CCCC-CCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF----KEFV-PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~----~~~~-~~~~~~yv~Q~d~~~~ 222 (1085)
..+|+|||+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|+++ .... .++.+|||+|++.++|
T Consensus 17 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~---~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 17 TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPD---SGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCC---CcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 46999999999999999999999999999999999999887 99999999987 2222 2467999999999999
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.|+.+..+... .+.+.+++++++.+||++.+|..+
T Consensus 94 ~ltV~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~--- 136 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRT----------------------------------AQERQRIEAMLELTGISELAGRYP--- 136 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCS----------------------------------HHHHHHHHHHHHHHTCGGGTTSCG---
T ss_pred CCCHHHHHHHHHHHcCCCh----------------------------------HHHHHHHHHHHHHcCCchHhcCCh---
Confidence 9999999999865432111 011235888999999998877655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+.. +++++.++|+..++..++|+|++|+
T Consensus 137 --~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~-g~tvi~vTHd~~ea~~~aDri~vl~ 213 (359)
T 3fvq_A 137 --HELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN-GKSAVFVSHDREEALQYADRIAVMK 213 (359)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-TCEEEEECCCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHCCEEEEEE
Confidence 4699999999999999999999999999999999999999999888876654 4566668999999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|+++..|+++++..
T Consensus 214 ~G~i~~~g~~~el~~ 228 (359)
T 3fvq_A 214 QGRILQTASPHELYR 228 (359)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEEeCHHHHHh
Confidence 999999999998753
No 24
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=3.3e-41 Score=369.15 Aligned_cols=209 Identities=24% Similarity=0.297 Sum_probs=175.8
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~ 913 (1085)
.+++.++|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 16 ~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 93 (257)
T 1g6h_A 16 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK--ADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQP 93 (257)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGG
T ss_pred EECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEEECCEECCCCCHHHHHhCCEEEEccCCcc
Confidence 3456789999999999999999999999999999999999876 568999999987643 1234579999999988
Q ss_pred CCCCCHHHHHHHhhhh-cCCC---------cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 914 SPGLTVLESLLFSAWL-RLPS---------EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~-~~~~---------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
++.+||+||+.++... +... ........+.++++++.+++.+..+... .+|||||||||+|||||
T Consensus 94 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkQrv~iAraL 168 (257)
T 1g6h_A 94 LKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA-----GELSGGQMKLVEIGRAL 168 (257)
T ss_dssp GGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc-----hhCCHHHHHHHHHHHHH
Confidence 8999999999986532 1010 0112334456889999999988777654 47999999999999999
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 169 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 238 (257)
T 1g6h_A 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMFN-GQIIAEGRGE 238 (257)
T ss_dssp HTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEET-TEEEEEEESH
T ss_pred HcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEeCHH
Confidence 9999999999999999999999999999999877999999999987 46678999999985 7888888753
No 25
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.1e-41 Score=379.58 Aligned_cols=204 Identities=25% Similarity=0.381 Sum_probs=178.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.++|.+|
T Consensus 26 g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 103 (355)
T 1z47_A 26 GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER--PTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMT 103 (355)
T ss_dssp TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSC
T ss_pred CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCccEEEECCEECCcCChhhCcEEEEecCcccCCCCC
Confidence 44568999999999999999999999999999999999876 569999999988643 234678999999999999999
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
|+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|+||||||||||
T Consensus 104 v~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~ 175 (355)
T 1z47_A 104 VYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFP-----HELSGGQQQRVALARALAPRPQVLLFDEPFAA 175 (355)
T ss_dssp HHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTCC
T ss_pred HHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 9999999865432 233445667899999999988877654 57999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 999 LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+.++..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 176 LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 231 (355)
T 1z47_A 176 IDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHE-GNVEQFGTPE 231 (355)
T ss_dssp SSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999754 999999999986 57788999999985 7999988754
No 26
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.1e-40 Score=378.83 Aligned_cols=210 Identities=27% Similarity=0.343 Sum_probs=180.7
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDI 912 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~ 912 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (362)
T 2it1_A 8 NIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK--PTSGKIYFDEKDVTELPPKDRNVGLVFQNWA 85 (362)
T ss_dssp EEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECTTCC
T ss_pred eEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC--CCceEEEECCEECCcCCHhHCcEEEEecCcc
Confidence 33444556789999999999999999999999999999999999876 5689999999886432 23567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++|.+||+||+.|+...+. ....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLL 157 (362)
T 2it1_A 86 LYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYP-----WQLSGGQQQRVAIARALVKEPEVLLL 157 (362)
T ss_dssp CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999865432 233445567899999999988877654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 219 (362)
T 2it1_A 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIRE-GEILQVGTPD 219 (362)
T ss_dssp ESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999754 999999999986 57788999999985 7899888754
No 27
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=9.4e-41 Score=379.06 Aligned_cols=210 Identities=26% Similarity=0.342 Sum_probs=179.7
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCC
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDI 912 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~ 912 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~ 85 (359)
T 2yyz_A 8 NLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK--PTSGEIYFDDVLVNDIPPKYREVGMVFQNYA 85 (359)
T ss_dssp EEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGTTEEEECSSCC
T ss_pred EEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC--CCccEEEECCEECCCCChhhCcEEEEecCcc
Confidence 33344456789999999999999999999999999999999999876 5689999999886432 23567999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++|.+||+||+.|+...+ .....+.++.++++++.+++.++.+... .+|||||||||+|||||+.+|++|||
T Consensus 86 l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSgGq~QRvalArAL~~~P~lLLL 157 (359)
T 2yyz_A 86 LYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKP-----TQLSGGQQQRVALARALVKQPKVLLF 157 (359)
T ss_dssp CCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred cCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999999975432 2223334567899999999988877654 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 219 (359)
T 2yyz_A 158 DEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQ-GKLVQYGTPD 219 (359)
T ss_dssp ESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999998754 999999999986 57788999999985 7899988754
No 28
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-40 Score=361.34 Aligned_cols=205 Identities=22% Similarity=0.311 Sum_probs=171.7
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---c-ccceEEEEccCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---T-FARISGYCEQNDIH 913 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~~~~ 913 (1085)
.+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++... . .++.+||++|++.+
T Consensus 15 ~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l 92 (240)
T 1ji0_A 15 YYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR--AQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred EECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCceEEECCEECCCCCHHHHHhCCEEEEecCCcc
Confidence 3455679999999999999999999999999999999999876 5689999999886431 1 24459999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
++.+||+||+.++...... .....+.++++++.++ +.+..+... .+||||||||++|||||+.+|+||||
T Consensus 93 ~~~ltv~enl~~~~~~~~~----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllL 163 (240)
T 1ji0_A 93 FPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLG-----GTLSGGEQQMLAIGRALMSRPKLLMM 163 (240)
T ss_dssp CTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBS-----SSSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred CCCCcHHHHHHHhhhcCCC----HHHHHHHHHHHHHHcccHhhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999986421111 1223455778888884 776665543 57999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.++|+|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 164 DEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 224 (240)
T 1ji0_A 164 DEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLET-GQIVLEGKAS 224 (240)
T ss_dssp ECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 9999999999999999999999777999999999986 46788999999985 7888887653
No 29
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.8e-40 Score=379.52 Aligned_cols=210 Identities=26% Similarity=0.339 Sum_probs=180.3
Q ss_pred ccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccceEEE
Q 001400 834 QEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFARISGY 906 (1085)
Q Consensus 834 ~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~~~gy 906 (1085)
++.+.+++..+|+||||+|++||+++|+|||||||||||++|+|..+ +.+|+|.++|.++.. ...++.+||
T Consensus 8 ~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~~~~~~~~~~~~~~~r~ig~ 85 (372)
T 1g29_1 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE--PSRGQIYIGDKLVADPEKGIFVPPKDRDIAM 85 (372)
T ss_dssp EEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC--CSEEEEEETTEEEEEGGGTEECCGGGSSEEE
T ss_pred eEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC--CCccEEEECCEECccccccccCCHhHCCEEE
Confidence 33344556789999999999999999999999999999999999876 569999999987532 123567999
Q ss_pred EccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcC
Q 001400 907 CEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVAN 986 (1085)
Q Consensus 907 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~ 986 (1085)
++|++.++|.+||+||+.|+...+. ....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+
T Consensus 86 v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~ 157 (372)
T 1g29_1 86 VFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKP-----RELSGGQRQRVALGRAIVRK 157 (372)
T ss_dssp ECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCG-----GGSCHHHHHHHHHHHHHHTC
T ss_pred EeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCc-----ccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999865432 233445567899999999988877654 57999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 987 PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 987 p~illlDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+||||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 158 P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 225 (372)
T 1g29_1 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNR-GVLQQVGSPD 225 (372)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999999999999999754 999999999986 57788999999985 7999988754
No 30
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=100.00 E-value=5.4e-40 Score=407.49 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC
Q 001400 942 AFVEEVMELVELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVAN---PSIVFMDEPTSGLDARAAAIVMRTVRNIVNT 1017 (1085)
Q Consensus 942 ~~~~~~l~~~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~---p~illlDEPtsgLD~~~~~~i~~~l~~~~~~ 1017 (1085)
..+.++++.++|... .+.. +..|||||||||+||++|+.+ |+||||||||+|||+.+...+++.|++++++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~ 782 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQP-----ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCC-----GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCcccccCC-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC
Confidence 356889999999763 2332 357999999999999999996 6999999999999999999999999999888
Q ss_pred CceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCC
Q 001400 1018 GRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPL 1054 (1085)
Q Consensus 1018 g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~ 1054 (1085)
|.|||+||||++. + +.||++++|. ++|++++.|+.
T Consensus 783 G~tVIvisHdl~~-i-~~aDrii~L~p~~g~~~G~Iv~~g~~ 822 (842)
T 2vf7_A 783 GNTVIAVEHKMQV-V-AASDWVLDIGPGAGEDGGRLVAQGTP 822 (842)
T ss_dssp TCEEEEECCCHHH-H-TTCSEEEEECSSSGGGCCSEEEEECH
T ss_pred CCEEEEEcCCHHH-H-HhCCEEEEECCCCCCCCCEEEEEcCH
Confidence 9999999999753 4 7899999994 46899998875
No 31
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.5e-40 Score=357.14 Aligned_cols=208 Identities=18% Similarity=0.222 Sum_probs=170.6
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDW 219 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~ 219 (1085)
...+|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.
T Consensus 17 ~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 93 (235)
T 3tif_A 17 IIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPT---EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFN 93 (235)
T ss_dssp EEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCC
T ss_pred ceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---ceEEEECCEEcccCCHHHHHHHhhccEEEEecCCc
Confidence 357999999999999999999999999999999999999886 9999999998866542 135999999999
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc-ccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-DTL 298 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-dt~ 298 (1085)
+++.+||+||+.++........... .+...++.++++.+||.+.. +..
T Consensus 94 l~~~~tv~enl~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~l~~~~l~~~~~~~~ 142 (235)
T 3tif_A 94 LIPLLTALENVELPLIFKYRGAMSG-------------------------------EERRKRALECLKMAELEERFANHK 142 (235)
T ss_dssp CCTTSCHHHHHHHHHHTCSSSCCCH-------------------------------HHHHHHHHHHHHHTTCCGGGTTCC
T ss_pred cCCCCcHHHHHHHHHHhhhccCCCH-------------------------------HHHHHHHHHHHHHCCCChhhhhCC
Confidence 9999999999998765321110000 00123477889999998643 544
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.. +..+||+|
T Consensus 143 -----~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~-tvi~vtHd~~-~~~~~d~i 215 (235)
T 3tif_A 143 -----PNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK-TVVVVTHDIN-VARFGERI 215 (235)
T ss_dssp -----GGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC-EEEEECSCHH-HHTTSSEE
T ss_pred -----hhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCC-EEEEEcCCHH-HHHhCCEE
Confidence 4569999999999999999999999999999999999999999999998764344 4555778876 45899999
Q ss_pred EEecCCeEEEecChhhH
Q 001400 379 ILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~ 395 (1085)
++|++|+++..++.+++
T Consensus 216 ~~l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 216 IYLKDGEVEREEKLRGF 232 (235)
T ss_dssp EEEETTEEEEEEECC--
T ss_pred EEEECCEEEEEcChhhh
Confidence 99999999999987664
No 32
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.8e-40 Score=378.55 Aligned_cols=208 Identities=24% Similarity=0.331 Sum_probs=173.0
Q ss_pred ccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCC
Q 001400 836 GVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHS 914 (1085)
Q Consensus 836 ~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~ 914 (1085)
.+.+++..+|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++... ..++.+||++|++.++
T Consensus 18 ~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~ 95 (372)
T 1v43_A 18 TKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE--PTEGRIYFGDRDVTYLPPKDRNISMVFQSYAVW 95 (372)
T ss_dssp EEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCGGGGTEEEEEC-----
T ss_pred EEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC--CCceEEEECCEECCCCChhhCcEEEEecCcccC
Confidence 334456789999999999999999999999999999999999876 5699999999886432 2356799999999999
Q ss_pred CCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 915 PGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|||||
T Consensus 96 ~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~-----~~LSGGq~QRvalArAL~~~P~lLLLDE 167 (372)
T 1v43_A 96 PHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYP-----AQLSGGQRQRVAVARAIVVEPDVLLMDE 167 (372)
T ss_dssp -CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCT-----TTCCSSCHHHHHHHHHHTTCCSEEEEES
T ss_pred CCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 9999999999875432 2233445567899999999988877653 5899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 168 P~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~-G~i~~~g~~~ 227 (372)
T 1v43_A 168 PLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNR-GQLLQIGSPT 227 (372)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred CCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 99999999999999999999765 999999999986 57788999999985 7899888754
No 33
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.5e-40 Score=365.62 Aligned_cols=206 Identities=25% Similarity=0.340 Sum_probs=174.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-----CCCceEEEEccCC-CCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-----VPPRTSAYVSQQD-WQVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-----~~~~~~~yv~Q~d-~~~~ 222 (1085)
.+|+|||++|++||+++|+||||||||||+++|+|.++|+ +|+|.++|.++... ..++.+|||+|++ ..+.
T Consensus 22 ~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~---~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~ 98 (275)
T 3gfo_A 22 HALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPS---SGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLF 98 (275)
T ss_dssp EEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCC
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC---CeEEEECCEECCcccccHHHHhCcEEEEEcCcccccc
Confidence 5999999999999999999999999999999999999886 99999999987421 1235799999986 3455
Q ss_pred CCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 223 EMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 223 ~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
.+||+||+.|+....+... .+...+++++++.+||++..+..+
T Consensus 99 ~~tv~e~l~~~~~~~~~~~----------------------------------~~~~~~~~~~l~~~~L~~~~~~~~--- 141 (275)
T 3gfo_A 99 SASVYQDVSFGAVNMKLPE----------------------------------DEIRKRVDNALKRTGIEHLKDKPT--- 141 (275)
T ss_dssp SSBHHHHHHHHHHTSCCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSBG---
T ss_pred cCcHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCCchhhcCCc---
Confidence 7899999999765432110 001234788999999998877655
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++.. +++|+.++|+..++..+||+|++|+
T Consensus 142 --~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~-g~tvi~vtHdl~~~~~~~drv~~l~ 218 (275)
T 3gfo_A 142 --HCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKEL-GITIIIATHDIDIVPLYCDNVFVMK 218 (275)
T ss_dssp --GGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH-CCEEEEEESCCSSGGGGCSEEEEEE
T ss_pred --ccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhC-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 4699999999999999999999999999999999999999999999987333 4556668899999999999999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+++++..
T Consensus 219 ~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 219 EGRVILQGNPKEVFA 233 (275)
T ss_dssp TTEEEEEECHHHHTH
T ss_pred CCEEEEECCHHHHhc
Confidence 999999999988753
No 34
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-40 Score=379.19 Aligned_cols=205 Identities=29% Similarity=0.406 Sum_probs=177.3
Q ss_pred cCCeE--EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh------hcccceEEEEccC
Q 001400 839 EDRLQ--LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ------ETFARISGYCEQN 910 (1085)
Q Consensus 839 ~~~~~--~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~------~~~~~~~gy~~Q~ 910 (1085)
+++.. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|+
T Consensus 13 y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~ 90 (353)
T 1oxx_K 13 FKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV--PSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQT 90 (353)
T ss_dssp EGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC--CSEEEEEETTEEEEETTEESSCGGGSCEEEEETT
T ss_pred ECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEEECCEECcccccccCChhhCCEEEEeCC
Confidence 34445 9999999999999999999999999999999999876 568999999987532 2346789999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+.+++.+||+||+.|+...+ .....+.++.++++++.++|.++.+... .+|||||||||+|||||+.+|++|
T Consensus 91 ~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~-----~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 91 WALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFP-----RELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp SCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCG-----GGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEE
Confidence 99999999999999976433 2233445567899999999988877654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||||+..+..+++.|+++.++ |.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 163 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 226 (353)
T 1oxx_K 163 LLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVK-GKLVQVGKPE 226 (353)
T ss_dssp EEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEEcCHH
Confidence 999999999999999999999999754 999999999986 57788999999985 7899888754
No 35
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.1e-40 Score=360.59 Aligned_cols=204 Identities=25% Similarity=0.369 Sum_probs=177.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|||++|++||+++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++|++|++.+++.+
T Consensus 24 ~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 24 QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPS---HGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCS---SCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECCEECCcCCHHHHhheEEEEecCCccCCCC
Confidence 46999999999999999999999999999999999999886 9999999998876543 35689999999888889
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+...... .....+++++++.+||.+..+..+
T Consensus 101 tv~e~l~~~~~~~~~------------------------------------~~~~~~~~~~l~~~~l~~~~~~~~----- 139 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGG------------------------------------SQDRQALQQVMAQTDCLALAQRDY----- 139 (266)
T ss_dssp BHHHHHHGGGTTSCS------------------------------------TTHHHHHHHHHHHTTCSTTTTSBG-----
T ss_pred CHHHHHHhhhhhcCc------------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----
Confidence 999999987542210 011234788999999988877655
Q ss_pred ccCchhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 305 KGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
..|||||||||+|||||+. +|++|+|||||+|||+.++.++.+.|+++++. ++++|+.++|+.+++..+||+|
T Consensus 140 ~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~-~~~tvi~vtHdl~~~~~~~d~v 218 (266)
T 4g1u_C 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQ-EPLAVCCVLHDLNLAALYADRI 218 (266)
T ss_dssp GGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHH-SSEEEEEECSCHHHHHHHCSEE
T ss_pred ccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHc-CCCEEEEEEcCHHHHHHhCCEE
Confidence 4699999999999999999 99999999999999999999999999998764 4567777999999999999999
Q ss_pred EEecCCeEEEecChhhHH
Q 001400 379 ILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~ 396 (1085)
++|++|++++.|+++++.
T Consensus 219 ~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 219 MLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp EEEETTEEEEEECHHHHC
T ss_pred EEEECCEEEEEcCHHHHh
Confidence 999999999999998873
No 36
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=9.4e-40 Score=357.30 Aligned_cols=205 Identities=22% Similarity=0.340 Sum_probs=174.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC--CCC---CCceEEEEccCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~~ 222 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.+++
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~ 113 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFD---EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFP 113 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCT
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCC
Confidence 36999999999999999999999999999999999999876 999999999874 111 1346999999998899
Q ss_pred CCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 223 EMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 223 ~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
.+||+||+.|+. +..+.. + . ....+++++++.+||.+..+..+
T Consensus 114 ~~tv~e~l~~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~L~~~~~~~~-- 157 (263)
T 2olj_A 114 HMTVLNNITLAPMKVRKWP-R---------E------------------------KAEAKAMELLDKVGLKDKAHAYP-- 157 (263)
T ss_dssp TSCHHHHHHHHHHHTSCCC-H---------H------------------------HHHHHHHHHHHHTTCGGGTTSCG--
T ss_pred CCCHHHHHHHHHHHHcCCC-H---------H------------------------HHHHHHHHHHHHCCCchHhcCCh--
Confidence 999999999864 222110 0 0 01224788999999988777655
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..+||+|++|
T Consensus 158 ---~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l 232 (263)
T 2olj_A 158 ---DSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANE--GMTMVVVTHEMGFAREVGDRVLFM 232 (263)
T ss_dssp ---GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEEEEE
T ss_pred ---hhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHhCCEEEEE
Confidence 469999999999999999999999999999999999999999999998764 455666889999999999999999
Q ss_pred cCCeEEEecChhhHH
Q 001400 382 SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~ 396 (1085)
++|++++.|+++++.
T Consensus 233 ~~G~i~~~g~~~~~~ 247 (263)
T 2olj_A 233 DGGYIIEEGKPEDLF 247 (263)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999988774
No 37
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=4.9e-40 Score=352.37 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=169.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~Q~d~~ 220 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l 93 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPT---EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL 93 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCS---EEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc
Confidence 46999999999999999999999999999999999999876 9999999998765432 1469999999998
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+||+.|+....+... . ..+.+++++++.+||.+..+..+
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~~l~~~~~~~~- 138 (224)
T 2pcj_A 94 IPELTALENVIVPMLKMGKPK----------K------------------------EAKERGEYLLSELGLGDKLSRKP- 138 (224)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------H------------------------HHHHHHHHHHHHTTCTTCTTCCG-
T ss_pred CCCCCHHHHHHhHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchhhhCCh-
Confidence 999999999998754322100 0 01224788999999988777655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++. + ++|+.++|+...+ .+||++++
T Consensus 139 ----~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~-g-~tvi~vtHd~~~~-~~~d~v~~ 211 (224)
T 2pcj_A 139 ----YELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEG-G-TSIVMVTHERELA-ELTHRTLE 211 (224)
T ss_dssp ----GGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T-CEEEEECSCHHHH-TTSSEEEE
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC-C-CEEEEEcCCHHHH-HhCCEEEE
Confidence 469999999999999999999999999999999999999999999998764 4 4555577887776 89999999
Q ss_pred ecCCeEEEecCh
Q 001400 381 LSEGQIVYQGPR 392 (1085)
Q Consensus 381 L~~G~iv~~G~~ 392 (1085)
|++|++++.|++
T Consensus 212 l~~G~i~~~g~~ 223 (224)
T 2pcj_A 212 MKDGKVVGEITR 223 (224)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEEeee
Confidence 999999999974
No 38
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=4.2e-40 Score=372.69 Aligned_cols=206 Identities=25% Similarity=0.367 Sum_probs=178.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+.|++||+++|+|||||||||||++|+|+++|+ +|+|.++|.++....+ ++.++||+|+..+++.+||
T Consensus 28 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 104 (355)
T 1z47_A 28 ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPT---KGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQHMTV 104 (355)
T ss_dssp TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTCCGGGSSEEEECGGGCCCTTSCH
T ss_pred CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ccEEEECCEECCcCChhhCcEEEEecCcccCCCCCH
Confidence 35999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 105 ~eni~~~l~~~~~~~----------------------------------~~~~~~v~~~l~~~gL~~~~~r~~-----~~ 145 (355)
T 1z47_A 105 YDNVSFGLREKRVPK----------------------------------DEMDARVRELLRFMRLESYANRFP-----HE 145 (355)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHcCChhHhcCCc-----cc
Confidence 999999765432110 001234888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 146 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 224 (355)
T 1z47_A 146 LSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMG-VTSVFVTHDQEEALEVADRVLVLHEGNV 224 (355)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4556688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 225 ~~~g~~~~l~ 234 (355)
T 1z47_A 225 EQFGTPEEVY 234 (355)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 39
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=4.4e-40 Score=373.59 Aligned_cols=207 Identities=27% Similarity=0.366 Sum_probs=179.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+++|+|+|+.+++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (359)
T 2yyz_A 16 VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPT---SGEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTV 92 (359)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECSSCCCCTTSCH
T ss_pred EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCC---ccEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+.. +. +.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~----------~~------------------------~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (359)
T 2yyz_A 93 FENIAFPLRARRIS----------KD------------------------EVEKRVVEIARKLLIDNLLDRKP-----TQ 133 (359)
T ss_dssp HHHHHGGGSSSCSH----------HH------------------------HTTHHHHHHHHHTTCGGGTTSCG-----GG
T ss_pred HHHHHHHHHhcCCC----------HH------------------------HHHHHHHHHHHHcCCchHhcCCh-----hh
Confidence 99999976543210 00 01235888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~G~i 212 (359)
T 2yyz_A 134 LSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELG-ITSVYVTHDQAEAMTMASRIAVFNQGKL 212 (359)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEcCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHHH
Q 001400 387 VYQGPRVSVLD 397 (1085)
Q Consensus 387 v~~G~~~~~~~ 397 (1085)
+..|+++++.+
T Consensus 213 ~~~g~~~~l~~ 223 (359)
T 2yyz_A 213 VQYGTPDEVYD 223 (359)
T ss_dssp EEEECHHHHHH
T ss_pred EEeCCHHHHHh
Confidence 99999988743
No 40
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3.2e-40 Score=373.56 Aligned_cols=205 Identities=22% Similarity=0.261 Sum_probs=176.3
Q ss_pred cccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCC
Q 001400 835 EGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIH 913 (1085)
Q Consensus 835 ~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~ 913 (1085)
+.+.+++. +|+||||+|++||+++|+|||||||||||++|+|... +.+|+|.++|.++.. ...++.+||++|++.+
T Consensus 7 l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~--p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l 83 (348)
T 3d31_A 7 LSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLSPEKHDIAFVYQNYSL 83 (348)
T ss_dssp EEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC--CSEEEEEETTEECTTSCHHHHTCEEECTTCCC
T ss_pred EEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC--CCCcEEEECCEECCCCchhhCcEEEEecCccc
Confidence 33444556 9999999999999999999999999999999999876 568999999988643 2345679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 914 SPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 914 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
++.+||+||+.|+...+... .. +.++++++.+++.++.+... .+|||||||||+|||||+.+|++||||
T Consensus 84 ~~~ltv~enl~~~~~~~~~~---~~---~~v~~~l~~~~L~~~~~~~~-----~~LSgGq~QRvalAraL~~~P~lLLLD 152 (348)
T 3d31_A 84 FPHMNVKKNLEFGMRMKKIK---DP---KRVLDTARDLKIEHLLDRNP-----LTLSGGEQQRVALARALVTNPKILLLD 152 (348)
T ss_dssp CTTSCHHHHHHHHHHHHCCC---CH---HHHHHHHHHTTCTTTTTSCG-----GGSCHHHHHHHHHHHHTTSCCSEEEEE
T ss_pred CCCCCHHHHHHHHHHHcCCC---HH---HHHHHHHHHcCCchHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 99999999999986543211 11 55789999999988877654 479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+..+..+++.|+++.+ .|.|||++|||++ ++...+|++++|++ |+++..|+..
T Consensus 153 EP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~-G~i~~~g~~~ 213 (348)
T 3d31_A 153 EPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMD-GKLIQVGKPE 213 (348)
T ss_dssp SSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESS-SCEEEEECHH
T ss_pred CccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 99999999999999999999965 4999999999986 57788999999985 7888888754
No 41
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=5.4e-40 Score=373.28 Aligned_cols=206 Identities=28% Similarity=0.391 Sum_probs=178.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
.++|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 92 (362)
T 2it1_A 16 FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPT---SGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTV 92 (362)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSCH
T ss_pred EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCC---ceEEEECCEECCcCCHhHCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... .+.+.+++++++.+||++..+..+ .+
T Consensus 93 ~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~-----~~ 133 (362)
T 2it1_A 93 YKNIAFPLELRKAPR----------------------------------EEIDKKVREVAKMLHIDKLLNRYP-----WQ 133 (362)
T ss_dssp HHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHTTCTTCTTCCG-----GG
T ss_pred HHHHHHHHHhcCCCH----------------------------------HHHHHHHHHHHHHcCCchHhhCCh-----hh
Confidence 999999765432110 001234888999999998777654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 134 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 212 (362)
T 2it1_A 134 LSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELG-ITTVYVTHDQAEALAMADRIAVIREGEI 212 (362)
T ss_dssp SCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCC-CEEEEECCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 213 ~~~g~~~~~~ 222 (362)
T 2it1_A 213 LQVGTPDEVY 222 (362)
T ss_dssp EEEECHHHHH
T ss_pred EEEcCHHHHH
Confidence 9999998874
No 42
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=100.00 E-value=6.3e-39 Score=398.39 Aligned_cols=196 Identities=25% Similarity=0.356 Sum_probs=144.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh-C----CC-----CCC---eeee------EEEEcCccCChh------
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-G----RK-----TGG---IIEG------DIYISGYPKRQE------ 898 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g----~~-----~~~---~~~G------~i~i~g~~~~~~------ 898 (1085)
.|+||||+|++|+++||+|+||||||||+++|. | .. ..+ ...| .|.+++.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 478999999999999999999999999999963 2 11 111 1123 366676654210
Q ss_pred ----------------cccceEEEEccCCCCC----------------------C-------------------------
Q 001400 899 ----------------TFARISGYCEQNDIHS----------------------P------------------------- 915 (1085)
Q Consensus 899 ----------------~~~~~~gy~~Q~~~~~----------------------~------------------------- 915 (1085)
...+..||++|...+. +
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 0123357776643211 1
Q ss_pred -------CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHHHhcCC
Q 001400 916 -------GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVELVANP 987 (1085)
Q Consensus 916 -------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p 987 (1085)
.+|+.|++.|... ... .....++++.++|.. ..+.. +..|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~~~---~~~~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------IAG---VHRYLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------CHH---HHHHHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------chH---HHHHHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCC
Confidence 2567777765321 111 123467889998865 33333 3579999999999999999875
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe-----cCcEEEEecCCC
Q 001400 988 ---SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK-----RGGELIYAGPLG 1055 (1085)
Q Consensus 988 ---~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~-----~gG~~~~~g~~~ 1055 (1085)
+||||||||+|||+.+...+++.|+++++.|.|||++|||++ ..+.||++++|. ++|++++.|+..
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~--~i~~aDrIivL~p~gg~~~G~Iv~~G~~~ 956 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD--VIKTSDWIIDLGPEGGAGGGTVVAQGTPE 956 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH--HHTTCSEEEEEESSSTTSCSEEEEEECHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH--HHHhCCEEEEECCCcCCCCCEEEEecCHH
Confidence 999999999999999999999999999888999999999975 357899999995 478999998754
No 43
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5e-40 Score=362.90 Aligned_cols=209 Identities=23% Similarity=0.384 Sum_probs=170.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC--h---hcccceEEEEccCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR--Q---ETFARISGYCEQNDIH 913 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~--~---~~~~~~~gy~~Q~~~~ 913 (1085)
+++..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++. . ..+++.+||++|++.+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP--ATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLE 108 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCeEEEECCEEcccccCCHHHHcCcEEEEEcCccc
Confidence 355689999999999999999999999999999999999876 56899999998764 2 2346679999998754
Q ss_pred C--CCCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 914 S--PGLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 914 ~--~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
. +.+||+||+.++...... .........+.++++++.+++.+..+... .+|||||||||+|||||+.+|+||
T Consensus 109 ~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lL 183 (279)
T 2ihy_A 109 KFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYI-----GYLSTGEKQRVMIARALMGQPQVL 183 (279)
T ss_dssp TSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTCCSEE
T ss_pred ccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHhCCCCEE
Confidence 3 356999999885321100 00111233456789999999988776654 479999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceE--EEEecCccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTI--VCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tv--i~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
||||||+|||+.++..+++.|+++.++|+|| |++|||++ ++...||++++|++ |++++.|+..+
T Consensus 184 lLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~~ 249 (279)
T 2ihy_A 184 ILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKD-GQSIQQGAVED 249 (279)
T ss_dssp EEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEET-TEEEEEEEHHH
T ss_pred EEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEEC-CEEEEECCHHH
Confidence 9999999999999999999999997669999 99999986 46678999999985 78998887543
No 44
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=6.2e-40 Score=360.71 Aligned_cols=200 Identities=25% Similarity=0.387 Sum_probs=169.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~tv~ 920 (1085)
+.+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++|.++....+++.+||++|++ ..++.+||+
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~--p~~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 97 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--PTSGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERVF 97 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSHH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCCcEEEECCEECchHHhhhhEEEEeccchhhcCCCcHH
Confidence 579999999999999999999999999999999999876 56899999998875434567799999995 456679999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC--cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT--SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSG 998 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsg 998 (1085)
||+.|+.....+. ....+.++++++.+++. +..+... .+|||||||||+|||||+.+|+||||||||+|
T Consensus 98 enl~~~~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~ 168 (266)
T 2yz2_A 98 DEVAFAVKNFYPD----RDPVPLVKKAMEFVGLDFDSFKDRVP-----FFLSGGEKRRVAIASVIVHEPDILILDEPLVG 168 (266)
T ss_dssp HHHHHTTTTTCTT----SCSHHHHHHHHHHTTCCHHHHTTCCG-----GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHHHHcCcCCcccccCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEcCcccc
Confidence 9999864321111 11234578899999998 7766554 47999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 999 LDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||+.++..+++.|+++.++|.|||++|||++ .+...||++++|++ |++++.|+.
T Consensus 169 LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~ 222 (266)
T 2yz2_A 169 LDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEK-GKKVFDGTR 222 (266)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEET-TEEEEEEEH
T ss_pred CCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCH
Confidence 9999999999999999767999999999987 36667999999985 688888764
No 45
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.5e-39 Score=354.51 Aligned_cols=206 Identities=25% Similarity=0.294 Sum_probs=175.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lT 225 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.... .++.++||+|++.+++.+|
T Consensus 28 ~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~lt 104 (256)
T 1vpl_A 28 KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPS---SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQ 104 (256)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTCHHHHHTTEEEECTTCCCCTTSB
T ss_pred EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEECCEECCccHHHHhhcEEEEcCCCCCCCCCc
Confidence 46999999999999999999999999999999999999876 999999999875421 1357999999998899999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|.....+... . +...+++++++.+||++..++.+ .
T Consensus 105 v~enl~~~~~~~~~~~----------~------------------------~~~~~~~~~l~~~gL~~~~~~~~-----~ 145 (256)
T 1vpl_A 105 GIEYLRFVAGFYASSS----------S------------------------EIEEMVERATEIAGLGEKIKDRV-----S 145 (256)
T ss_dssp HHHHHHHHHHHHCCCH----------H------------------------HHHHHHHHHHHHHCCGGGGGSBG-----G
T ss_pred HHHHHHHHHHHcCCCh----------H------------------------HHHHHHHHHHHHCCCchHhcCCh-----h
Confidence 9999998654321100 0 00124778899999998877655 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCe
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQ 385 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~ 385 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+. +++|+.++|+..++..+||++++|++|+
T Consensus 146 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tiiivtHd~~~~~~~~d~v~~l~~G~ 223 (256)
T 1vpl_A 146 TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE--GLTILVSSHNMLEVEFLCDRIALIHNGT 223 (256)
T ss_dssp GCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEEECCHHHHTTTCSEEEEEETTE
T ss_pred hCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhC--CCEEEEEcCCHHHHHHHCCEEEEEECCE
Confidence 69999999999999999999999999999999999999999999998653 4556668899999999999999999999
Q ss_pred EEEecChhhHHH
Q 001400 386 IVYQGPRVSVLD 397 (1085)
Q Consensus 386 iv~~G~~~~~~~ 397 (1085)
+++.|+++++.+
T Consensus 224 i~~~g~~~~~~~ 235 (256)
T 1vpl_A 224 IVETGTVEELKE 235 (256)
T ss_dssp EEEEEEHHHHHH
T ss_pred EEEecCHHHHHH
Confidence 999999888754
No 46
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=6.9e-40 Score=354.03 Aligned_cols=197 Identities=23% Similarity=0.336 Sum_probs=168.8
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+|+||||+|++ |++||+||||||||||+++|+|... +.+|+|.++|.++.. ...++.+||++|++.+++.+||+||
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 90 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK--PDRGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRN 90 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC--CSEEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC--CCceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHHH
Confidence 49999999999 9999999999999999999999876 568999999987643 2345679999999999999999999
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+.|+...+ .. ...++.++++++.+++.+..+... .+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 91 l~~~~~~~---~~--~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~ 160 (240)
T 2onk_A 91 IAYGLRNV---ER--VERDRRVREMAEKLGIAHLLDRKP-----ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLK 160 (240)
T ss_dssp HHTTCTTS---CH--HHHHHHHHHHHHTTTCTTTTTCCG-----GGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHH
T ss_pred HHHHHHHc---CC--chHHHHHHHHHHHcCCHHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 98864321 11 122456789999999987776654 479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1003 AAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
++..+++.|+++.++ |+|||++|||++ ++...||++++|++ |++++.|+..
T Consensus 161 ~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~-G~i~~~g~~~ 212 (240)
T 2onk_A 161 TKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLN-GRIVEKGKLK 212 (240)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEET-TEEEEEECHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999998754 999999999986 46788999999985 7898888753
No 47
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=8.8e-40 Score=372.83 Aligned_cols=206 Identities=25% Similarity=0.350 Sum_probs=172.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|+..+++++||
T Consensus 24 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv 100 (372)
T 1v43_A 24 FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPT---EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTV 100 (372)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCGGGGTEEEEEC------CCCH
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCC---ceEEEECCEECCCCChhhCcEEEEecCcccCCCCCH
Confidence 46999999999999999999999999999999999999876 9999999998865433 4679999999999999999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
+||+.|+.+..+... . +.+.+++++++.+||.+..+..+ .+
T Consensus 101 ~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~r~~-----~~ 141 (372)
T 1v43_A 101 YENIAFPLKIKKFPK----------D------------------------EIDKRVRWAAELLQIEELLNRYP-----AQ 141 (372)
T ss_dssp HHHHHTTCC--CCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCT-----TT
T ss_pred HHHHHHHHHhcCCCH----------H------------------------HHHHHHHHHHHHcCChhHhcCCh-----hh
Confidence 999999754332110 0 01234888999999998877655 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|++
T Consensus 142 LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~vl~~G~i 220 (372)
T 1v43_A 142 LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK-VTTIYVTHDQVEAMTMGDRIAVMNRGQL 220 (372)
T ss_dssp CCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEEEETTEE
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999876544 4555688999999999999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
+..|+++++.
T Consensus 221 ~~~g~~~~l~ 230 (372)
T 1v43_A 221 LQIGSPTEVY 230 (372)
T ss_dssp EEEECHHHHH
T ss_pred EEeCCHHHHH
Confidence 9999998874
No 48
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=7.3e-40 Score=370.69 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=176.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-CceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-PRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++....+ ++.++||+|++.+++++||+|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~ltv~e 91 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPD---SGRILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK 91 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCS---EEEEEETTEECTTSCHHHHTCEEECTTCCCCTTSCHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCC---CcEEEECCEECCCCchhhCcEEEEecCcccCCCCCHHH
Confidence 999999999999999999999999999999999999886 9999999998865332 367999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+.+..+... ..+++++++.+||++..|..+ .+||
T Consensus 92 nl~~~~~~~~~~~-------------------------------------~~~v~~~l~~~~L~~~~~~~~-----~~LS 129 (348)
T 3d31_A 92 NLEFGMRMKKIKD-------------------------------------PKRVLDTARDLKIEHLLDRNP-----LTLS 129 (348)
T ss_dssp HHHHHHHHHCCCC-------------------------------------HHHHHHHHHHTTCTTTTTSCG-----GGSC
T ss_pred HHHHHHHHcCCCH-------------------------------------HHHHHHHHHHcCCchHhcCCh-----hhCC
Confidence 9999754322100 024788999999998877655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++|+++.
T Consensus 130 gGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g-~tii~vTHd~~~~~~~adri~vl~~G~i~~ 208 (348)
T 3d31_A 130 GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNK-LTVLHITHDQTEARIMADRIAVVMDGKLIQ 208 (348)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTT-CEEEEEESCHHHHHHHCSEEEEESSSCEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999876544 455668899999999999999999999999
Q ss_pred ecChhhHH
Q 001400 389 QGPRVSVL 396 (1085)
Q Consensus 389 ~G~~~~~~ 396 (1085)
.|+++++.
T Consensus 209 ~g~~~~~~ 216 (348)
T 3d31_A 209 VGKPEEIF 216 (348)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99998874
No 49
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.3e-40 Score=357.01 Aligned_cols=210 Identities=26% Similarity=0.312 Sum_probs=166.6
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC--CCCCeeeeEEEEcCccCChh---c-ccceEEEEccC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTGGIIEGDIYISGYPKRQE---T-FARISGYCEQN 910 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~~~~~G~i~i~g~~~~~~---~-~~~~~gy~~Q~ 910 (1085)
+.+++..+|+||||+|++||++||+||||||||||+++|+|. .. +.+|+|.++|.++... . .++.++|++|+
T Consensus 11 ~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~--p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~ 88 (250)
T 2d2e_A 11 ASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT--VERGEILLDGENILELSPDERARKGLFLAFQY 88 (250)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE--EEEEEEEETTEECTTSCHHHHHHTTBCCCCCC
T ss_pred EEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC--CCceEEEECCEECCCCCHHHHHhCcEEEeccC
Confidence 334557899999999999999999999999999999999997 33 6799999999876431 2 23458999999
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCC-CcccccccCCCCCCC-CCHHHHHHHHHHHHHhcCCC
Q 001400 911 DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVEL-TSLSGALIGLPGING-LSTEQRKRLTIAVELVANPS 988 (1085)
Q Consensus 911 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-~~~~~~~~~~~~~~~-LS~Gqrqrl~iA~aL~~~p~ 988 (1085)
+.+++.+||+||+.+.............+..+.++++++.+++ .+..+..+ .. ||||||||++|||||+.+|+
T Consensus 89 ~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~~LSgGqkQrv~iAraL~~~p~ 163 (250)
T 2d2e_A 89 PVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYL-----NEGFSGGEKKRNEILQLLVLEPT 163 (250)
T ss_dssp CC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBT-----TCC----HHHHHHHHHHHHHCCS
T ss_pred CccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc-----ccCCCHHHHHHHHHHHHHHcCCC
Confidence 9999999999999886431111111222334567889999999 46666543 46 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCCC
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||+|||+.++..+++.|+++.++|+|||++|||++. +... +|++++|++ |++++.|+..
T Consensus 164 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 229 (250)
T 2d2e_A 164 YAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRI-LNYIQPDKVHVMMD-GRVVATGGPE 229 (250)
T ss_dssp EEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGG-GGTSCCSEEEEEET-TEEEEEESHH
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-HHHhcCCEEEEEEC-CEEEEEeCHH
Confidence 999999999999999999999999986679999999999863 5455 599999985 7899888753
No 50
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-39 Score=356.64 Aligned_cols=216 Identities=23% Similarity=0.323 Sum_probs=173.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++.
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 20 FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKAD---EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 36999999999999999999999999999999999999876 9999999998765322 2469999999988999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+......+ ... ..- ....... ......+++++++.+||++..++.+
T Consensus 97 ~tv~enl~~~~~~~~~~-~~~---~~~----~~~~~~~-------------~~~~~~~~~~~l~~~~l~~~~~~~~---- 151 (257)
T 1g6h_A 97 MTVLENLLIGEICPGES-PLN---SLF----YKKWIPK-------------EEEMVEKAFKILEFLKLSHLYDRKA---- 151 (257)
T ss_dssp SBHHHHHHGGGTSTTSC-HHH---HHH----HCSSCCC-------------CHHHHHHHHHHHHHTTCGGGTTSBG----
T ss_pred CcHHHHHHHHHhhhccC-ccc---ccc----cccccCC-------------HHHHHHHHHHHHHHcCCchhhCCCc----
Confidence 99999999864320000 000 000 0000000 0001234788999999988777665
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++. +++|+.++|+.+++..+||+|++|++
T Consensus 152 -~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tvi~vtHd~~~~~~~~d~v~~l~~ 228 (257)
T 1g6h_A 152 -GELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLDIVLNYIDHLYVMFN 228 (257)
T ss_dssp -GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCSTTGGGCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHC--CCEEEEEecCHHHHHHhCCEEEEEEC
Confidence 469999999999999999999999999999999999999999999998754 45566688999999999999999999
Q ss_pred CeEEEecChhh
Q 001400 384 GQIVYQGPRVS 394 (1085)
Q Consensus 384 G~iv~~G~~~~ 394 (1085)
|++++.|++++
T Consensus 229 G~i~~~g~~~~ 239 (257)
T 1g6h_A 229 GQIIAEGRGEE 239 (257)
T ss_dssp TEEEEEEESHH
T ss_pred CEEEEEeCHHH
Confidence 99999999887
No 51
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.1e-39 Score=372.87 Aligned_cols=206 Identities=27% Similarity=0.357 Sum_probs=178.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC------CCC-CceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE------FVP-PRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~------~~~-~~~~~yv~Q~d~~ 220 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. ..+ ++.++||+|+..+
T Consensus 16 ~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 16 VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPS---RGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCS---EEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCC---ccEEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 46999999999999999999999999999999999999876 9999999988744 222 4679999999999
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++++||+||+.|+.+..+... .+.+.+++++++.+||++..+..+
T Consensus 93 ~~~ltv~eni~~~~~~~~~~~----------------------------------~~~~~~v~~~l~~~~L~~~~~r~~- 137 (372)
T 1g29_1 93 YPHMTVYDNIAFPLKLRKVPR----------------------------------QEIDQRVREVAELLGLTELLNRKP- 137 (372)
T ss_dssp CTTSCHHHHHHHHHHHTTCCH----------------------------------HHHHHHHHHHHHHHTCGGGTTCCG-
T ss_pred CCCCCHHHHHHHHHHHcCCCH----------------------------------HHHHHHHHHHHHHCCCchHhcCCc-
Confidence 999999999999865432110 001234888999999998877655
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
.+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++
T Consensus 138 ----~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~a~~~adri~v 212 (372)
T 1g29_1 138 ----RELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLG-VTTIYVTHDQVEAMTMGDRIAV 212 (372)
T ss_dssp ----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHT-CEEEEEESCHHHHHHHCSEEEE
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcC-CEEEEECCCHHHHHHhCCEEEE
Confidence 46999999999999999999999999999999999999999999999876544 4555688999999999999999
Q ss_pred ecCCeEEEecChhhHH
Q 001400 381 LSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 381 L~~G~iv~~G~~~~~~ 396 (1085)
|++|+++..|+++++.
T Consensus 213 l~~G~i~~~g~~~~l~ 228 (372)
T 1g29_1 213 MNRGVLQQVGSPDEVY 228 (372)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EeCCEEEEeCCHHHHH
Confidence 9999999999998874
No 52
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2.1e-39 Score=351.21 Aligned_cols=204 Identities=26% Similarity=0.365 Sum_probs=171.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|+++..... ++.++||+|++.+++.
T Consensus 19 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQ---KGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CceEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 46999999999999999999999999999999999999876 9999999998865432 2359999999998999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-CcccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-LDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-L~~~~dt~vg~~ 302 (1085)
+||+||+.|+.... .. . ......++.+++.++ |.+..+..+
T Consensus 96 ltv~enl~~~~~~~-~~-~---------------------------------~~~~~~~~~~l~~~~~l~~~~~~~~--- 137 (240)
T 1ji0_A 96 LTVYENLMMGAYNR-KD-K---------------------------------EGIKRDLEWIFSLFPRLKERLKQLG--- 137 (240)
T ss_dssp SBHHHHHHGGGTTC-CC-S---------------------------------SHHHHHHHHHHHHCHHHHTTTTSBS---
T ss_pred CcHHHHHHHhhhcC-CC-H---------------------------------HHHHHHHHHHHHHcccHhhHhcCCh---
Confidence 99999999863211 00 0 001123677888884 877666554
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ . +++|+.++|+..++..+||+|++|+
T Consensus 138 --~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~-g~tvi~vtHd~~~~~~~~d~v~~l~ 213 (240)
T 1ji0_A 138 --GTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-E-GTTILLVEQNALGALKVAHYGYVLE 213 (240)
T ss_dssp --SSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-T-TCCEEEEESCHHHHHHHCSEEEEEE
T ss_pred --hhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-C-CCEEEEEecCHHHHHHhCCEEEEEE
Confidence 46999999999999999999999999999999999999999999999875 3 4455567899999999999999999
Q ss_pred CCeEEEecChhhHH
Q 001400 383 EGQIVYQGPRVSVL 396 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~ 396 (1085)
+|++++.|+++++.
T Consensus 214 ~G~i~~~g~~~~~~ 227 (240)
T 1ji0_A 214 TGQIVLEGKASELL 227 (240)
T ss_dssp TTEEEEEEEHHHHH
T ss_pred CCEEEEEcCHHHHh
Confidence 99999999987764
No 53
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=8.3e-40 Score=358.63 Aligned_cols=205 Identities=23% Similarity=0.269 Sum_probs=173.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC----------CC------CCceE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE----------FV------PPRTS 211 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~----------~~------~~~~~ 211 (1085)
.++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++.. .. .++.+
T Consensus 19 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS---EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEccccccccccccccChhhHHHHhcce
Confidence 46999999999999999999999999999999999999876 9999999988751 11 13569
Q ss_pred EEEccCCCCCCCCCHHHHHHHhh-hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC
Q 001400 212 AYVSQQDWQVAEMTVRETLDFAG-QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG 290 (1085)
Q Consensus 212 ~yv~Q~d~~~~~lTV~E~l~f~~-~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg 290 (1085)
+||+|++.+++.+||+||+.|+. ...+.. + . ....+++++++.+|
T Consensus 96 ~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~-~---------~------------------------~~~~~~~~~l~~~~ 141 (262)
T 1b0u_A 96 TMVFQHFNLWSHMTVLENVMEAPIQVLGLS-K---------H------------------------DARERALKYLAKVG 141 (262)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTTCCC-H---------H------------------------HHHHHHHHHHHHTT
T ss_pred EEEecCcccCCCCcHHHHHHhhHHHhcCCC-H---------H------------------------HHHHHHHHHHHHcC
Confidence 99999998999999999999853 222110 0 0 01224788999999
Q ss_pred Cccc-ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 291 LDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 291 L~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
|.+. .+..+ ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++. +++|+.++|+..
T Consensus 142 L~~~~~~~~~-----~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--g~tvi~vtHd~~ 214 (262)
T 1b0u_A 142 IDERAQGKYP-----VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--GKTMVVVTHEMG 214 (262)
T ss_dssp CCHHHHTSCG-----GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--TCCEEEECSCHH
T ss_pred CCchhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHH
Confidence 9887 77655 469999999999999999999999999999999999999999999998764 445566889999
Q ss_pred HHHhhcCeEEEecCCeEEEecChhhHH
Q 001400 370 EAYELFDDVILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 370 ~~~~~~D~ii~L~~G~iv~~G~~~~~~ 396 (1085)
++..+||+|++|++|++++.|+++++.
T Consensus 215 ~~~~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 215 FARHVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999988774
No 54
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=9.4e-40 Score=371.31 Aligned_cols=204 Identities=22% Similarity=0.285 Sum_probs=176.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC-----CC-CCceEEEEccCCCCCCC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE-----FV-PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~-----~~-~~~~~~yv~Q~d~~~~~ 223 (1085)
+|+|+|++|++|++++|+|||||||||||++|+|+++|+ +|+|.++|+++.. .. .++.++||+|+..++++
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~---~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ 96 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPS---TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPN 96 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCS---EEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTT
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCEECcccccccCChhhCCEEEEeCCCccCCC
Confidence 999999999999999999999999999999999999876 9999999988743 22 24679999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+||+||+.|+.+..+... . +.+.+++++++.+||++..+..+
T Consensus 97 ltv~eni~~~~~~~~~~~----------~------------------------~~~~~v~~~l~~~~L~~~~~~~~---- 138 (353)
T 1oxx_K 97 LTAFENIAFPLTNMKMSK----------E------------------------EIRKRVEEVAKILDIHHVLNHFP---- 138 (353)
T ss_dssp SCHHHHHHGGGTTSSCCH----------H------------------------HHHHHHHHHHHHTTCGGGTTSCG----
T ss_pred CCHHHHHHHHHHHcCCCH----------H------------------------HHHHHHHHHHHHcCCchHhcCCh----
Confidence 999999999765432110 0 01234888999999998877655
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.+|||||||||+|||||+.+|++|+|||||||||+.++.++.+.|+++.+..+ ++++.++|+..++..++|+|++|++
T Consensus 139 -~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g-~tvi~vTHd~~~~~~~adri~vl~~ 216 (353)
T 1oxx_K 139 -RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLG-VTLLVVSHDPADIFAIADRVGVLVK 216 (353)
T ss_dssp -GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHC-CEEEEEESCHHHHHHHCSEEEEEET
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcC-CEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 46999999999999999999999999999999999999999999999876544 4555688999999999999999999
Q ss_pred CeEEEecChhhHH
Q 001400 384 GQIVYQGPRVSVL 396 (1085)
Q Consensus 384 G~iv~~G~~~~~~ 396 (1085)
|+++..|+++++.
T Consensus 217 G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 217 GKLVQVGKPEDLY 229 (353)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999998874
No 55
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=2.2e-39 Score=360.81 Aligned_cols=208 Identities=23% Similarity=0.346 Sum_probs=166.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|||+.|++|++++|+||||||||||+++|+|+++|. +|+|.++|.++..... ++.++||+|++.+|+ .
T Consensus 67 ~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~---~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 142 (306)
T 3nh6_A 67 RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDIS---SGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-D 142 (306)
T ss_dssp CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCS---EEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS-E
T ss_pred CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC---CcEEEECCEEcccCCHHHHhcceEEEecCCccCc-c
Confidence 46999999999999999999999999999999999999886 9999999999876542 467999999998775 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+|||.|+..... .+.+.++. +..+ ....++ .++...+|.+|+ ..
T Consensus 143 Tv~eNi~~~~~~~~----~~~~~~~~---~~~~------------------------l~~~i~--~lp~gl~t~~~~-~g 188 (306)
T 3nh6_A 143 TIADNIRYGRVTAG----NDEVEAAA---QAAG------------------------IHDAIM--AFPEGYRTQVGE-RG 188 (306)
T ss_dssp EHHHHHHTTSTTCC----HHHHHHHH---HHHT------------------------CHHHHH--HSTTGGGCEEST-TS
T ss_pred cHHHHHHhhcccCC----HHHHHHHH---HHhC------------------------cHHHHH--hccchhhhHhcC-Cc
Confidence 99999998642110 01000000 0000 111111 244567888885 45
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|+||+|||||||||+.+...|.+.|+++.+ ++| +|+++|....+.. ||+|++|++|
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~T-vi~itH~l~~~~~-aD~i~vl~~G 264 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRT-TIVVAHRLSTVVN-ADQILVIKDG 264 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSE-EEEECCSHHHHHT-CSEEEEEETT
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCE-EEEEEcChHHHHc-CCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998854 444 5557888888766 9999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+++++++
T Consensus 265 ~iv~~G~~~el~~ 277 (306)
T 3nh6_A 265 CIVERGRHEALLS 277 (306)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998865
No 56
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.2e-38 Score=347.40 Aligned_cols=195 Identities=24% Similarity=0.347 Sum_probs=164.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|. +++.+||++|++.+++.+||+
T Consensus 17 ~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~--p~~G~I~----------~~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 17 ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR--PIQGKIE----------VYQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC--CSEEEEE----------ECSCEEEECSCCCCSSCCBHH
T ss_pred CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC--CCCcEEE----------EeccEEEEcCCCccCCCCCHH
Confidence 5679999999999999999999999999999999999876 4689997 245699999999988899999
Q ss_pred HHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 921 ESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 921 e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
||+.++...... .........+.++++++.+++.+..+... .+||||||||++|||||+.+|+||||||||+||
T Consensus 85 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~lllLDEPts~L 159 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREF-----TSLSGGQRQLILIARAIASECKLILLDEPTSAL 159 (253)
T ss_dssp HHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBG-----GGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTS
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 999986432210 00011233456789999999988776654 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 1000 DARAAAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+.++..+++.|+++.++ |+|||++|||++ .+...||++++|++ |+ ++.|+..
T Consensus 160 D~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~-G~-~~~g~~~ 213 (253)
T 2nq2_C 160 DLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNK-QN-FKFGETR 213 (253)
T ss_dssp CHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEET-TE-EEEEEHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeC-Ce-EecCCHH
Confidence 999999999999999776 999999999986 46678999999986 56 7777654
No 57
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-39 Score=348.96 Aligned_cols=201 Identities=22% Similarity=0.321 Sum_probs=172.0
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
+|+|+|+.+++ ++++|+|||||||||||++|+|.++|+ +|+|.++|+++.... .++.++||+|++.+++.+||+|
T Consensus 14 ~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~ltv~e 89 (240)
T 2onk_A 14 FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPD---RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYR 89 (240)
T ss_dssp EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCS---EEEEEETTEECTTSCTTTSCCBCCCSSCCCCTTSCHHH
T ss_pred EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCC---ceEEEECCEECCcCchhhCcEEEEcCCCccCCCCcHHH
Confidence 49999999999 999999999999999999999999876 999999999875432 3467999999999999999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+....+. . . .+.+++++++.+||.+..+..+ ..||
T Consensus 90 nl~~~~~~~~~-------~---~--------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LS 128 (240)
T 2onk_A 90 NIAYGLRNVER-------V---E--------------------------RDRRVREMAEKLGIAHLLDRKP-----ARLS 128 (240)
T ss_dssp HHHTTCTTSCH-------H---H--------------------------HHHHHHHHHHTTTCTTTTTCCG-----GGSC
T ss_pred HHHHHHHHcCC-------c---h--------------------------HHHHHHHHHHHcCCHHHhcCCh-----hhCC
Confidence 99986432210 0 0 0123778899999988777655 4699
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++..+. +|+.++|+.+++..+||++++|++|++++
T Consensus 129 gGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~-tvi~vtHd~~~~~~~~d~i~~l~~G~i~~ 207 (240)
T 2onk_A 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDV-PILHVTHDLIEAAMLADEVAVMLNGRIVE 207 (240)
T ss_dssp HHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTC-CEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998654344 45557899999999999999999999999
Q ss_pred ecChhhHH
Q 001400 389 QGPRVSVL 396 (1085)
Q Consensus 389 ~G~~~~~~ 396 (1085)
.|+++++.
T Consensus 208 ~g~~~~~~ 215 (240)
T 2onk_A 208 KGKLKELF 215 (240)
T ss_dssp EECHHHHH
T ss_pred ECCHHHHH
Confidence 99988774
No 58
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.5e-39 Score=351.21 Aligned_cols=211 Identities=23% Similarity=0.299 Sum_probs=169.7
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcc-cceEEEEccCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETF-ARISGYCEQNDIHS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~-~~~~gy~~Q~~~~~ 914 (1085)
+++..+|+||||+|++||++||+||||||||||+++|+|.....+.+|+|.++|.++.. ... ++.+||++|++.++
T Consensus 30 y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~ 109 (267)
T 2zu0_C 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEI 109 (267)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccc
Confidence 34568999999999999999999999999999999999973222578999999987642 122 33589999999999
Q ss_pred CCCCHHHHHHHhhh-hc---CCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 915 PGLTVLESLLFSAW-LR---LPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~-~~---~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
+.+||.|++.+... .+ ........+..+.++++++.+++. ...+..+. .+|||||||||+|||||+.+|+|
T Consensus 110 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~----~~LSgGq~QRv~iAraL~~~p~l 185 (267)
T 2zu0_C 110 PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN----VGFSGGEKKRNDILQMAVLEPEL 185 (267)
T ss_dssp TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----TTCCHHHHHHHHHHHHHHHCCSE
T ss_pred ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----cCCCHHHHHHHHHHHHHHhCCCE
Confidence 99999999987531 11 111112233345688999999996 45554431 24999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHh-cCEEEEEecCcEEEEecCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFES-FDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~-~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||||+|||+.++..+++.|+++.++|+|||++|||++. +... ||++++|++ |++++.|+..
T Consensus 186 LlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 250 (267)
T 2zu0_C 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRI-LDYIKPDYVHVLYQ-GRIVKSGDFT 250 (267)
T ss_dssp EEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGG-GGTSCCSEEEEEET-TEEEEEECTT
T ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHH-HHhhcCCEEEEEEC-CEEEEEcCHH
Confidence 99999999999999999999999986669999999999863 4444 899999985 7899988764
No 59
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=6.7e-39 Score=348.36 Aligned_cols=197 Identities=26% Similarity=0.413 Sum_probs=163.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 21 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 21 SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI--PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 4679999999999999999999999999999999999876 468999999988643 335667999999998876 5
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
||+||+.|+.. ... .+.++++++.+++.+..+.. .+. .+.+|||||||||+|||||+.+|+||
T Consensus 98 tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qRv~iAraL~~~p~ll 167 (247)
T 2ff7_A 98 SIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-QGAGLSGGQRQRIAIARALVNNPKIL 167 (247)
T ss_dssp BHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST-TTTCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred cHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC-CCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 111 13356778888876554432 111 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |++++.|+.
T Consensus 168 lLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~ 227 (247)
T 2ff7_A 168 IFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEK-GKIVEQGKH 227 (247)
T ss_dssp EECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEET-TEEEEEECH
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEEC-CEEEEECCH
Confidence 9999999999999999999999984 69999999999863 4 56999999985 788888874
No 60
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=7.1e-39 Score=347.75 Aligned_cols=195 Identities=23% Similarity=0.350 Sum_probs=168.5
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
.+|+||||+|++||+++|+||||||||||+++|+|... +. |+|.++|.++.. ..+++.+||++|++.+++.+||
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~--p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv 90 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS--GK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPV 90 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBH
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcH
Confidence 47899999999999999999999999999999999876 56 999999987632 3356679999999998889999
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC-------EEEE
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS-------IVFM 992 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~-------illl 992 (1085)
+||+.++.. +. .. .+.++++++.+++.+..+... .+||||||||++|||||+.+|+ +|||
T Consensus 91 ~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllL 157 (249)
T 2qi9_C 91 WHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157 (249)
T ss_dssp HHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEE
T ss_pred HHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEE
Confidence 999987531 11 11 345788999999988776653 4799999999999999999999 9999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 993 DEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 993 DEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||+|||+.++..+++.|+++.++|+|||++|||++ .+...+|++++|++ |++++.|+..
T Consensus 158 DEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~-G~i~~~g~~~ 218 (249)
T 2qi9_C 158 DEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKG-GKMLASGRRE 218 (249)
T ss_dssp SSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEEEHH
T ss_pred ECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999777999999999986 46678999999985 7888888654
No 61
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=6e-39 Score=353.31 Aligned_cols=203 Identities=25% Similarity=0.305 Sum_probs=162.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ--PTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-RS 108 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-SB
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEcccCCHHHHhccEEEEecCCcccc-cc
Confidence 568999999999999999999999999999999999876 568999999987643 234567999999998876 59
Q ss_pred HHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHc--CCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 919 VLESLLFSAWLRLP-SEIELETQRAFVEEVMELV--ELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 919 v~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
|+||+.|+...... ...........++++++.+ ++....+.. +.+|||||||||+|||||+.+|+|||||||
T Consensus 109 v~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~-----~~~LSgGq~QRv~lAraL~~~p~lllLDEP 183 (271)
T 2ixe_A 109 FRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGET-----GNQLSGGQRQAVALARALIRKPRLLILDNA 183 (271)
T ss_dssp HHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGG-----GTTSCHHHHHHHHHHHHHTTCCSEEEEEST
T ss_pred HHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCC-----cCCCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 99999886321100 0000111122345667766 555554443 257999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 996 TSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 996 tsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|+|||+.++..+++.|+++.+ .|+|||++|||++ ....||++++|++ |+++..|+..
T Consensus 184 ts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~--~~~~~d~v~~l~~-G~i~~~g~~~ 241 (271)
T 2ixe_A 184 TSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKE-GSVCEQGTHL 241 (271)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH--HHTTCSEEEEEET-TEEEEEECHH
T ss_pred ccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999864 4899999999975 3456999999985 7888888753
No 62
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=6e-39 Score=357.23 Aligned_cols=211 Identities=25% Similarity=0.343 Sum_probs=170.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ ++..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 53 ~i~~~~vs~~y~------------~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~--p~~G~I~i~G~~i 118 (306)
T 3nh6_A 53 RIEFENVHFSYA------------DGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD--ISSGCIRIDGQDI 118 (306)
T ss_dssp CEEEEEEEEESS------------TTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC--CSEEEEEETTEET
T ss_pred eEEEEEEEEEcC------------CCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC--CCCcEEEECCEEc
Confidence 466677766542 23579999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
.. ..+++.+|||+|++.+++ .||+||+.|+.... . .+.++++++.+++.+.. +..++..
T Consensus 119 ~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~----~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~- 187 (306)
T 3nh6_A 119 SQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----G----NDEVEAAAQAAGIHDAIMAFPEGYRTQVGER- 187 (306)
T ss_dssp TSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----C----HHHHHHHHHHHTCHHHHHHSTTGGGCEESTT-
T ss_pred ccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----C----HHHHHHHHHHhCcHHHHHhccchhhhHhcCC-
Confidence 53 346778999999998885 59999999864211 1 12355666666665432 2223322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+|||||||||+|||||+.+|+|||||||||+||+.++..|++.|+++. +++|||+|||+++ ....||++++|++
T Consensus 188 g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~-~~~Tvi~itH~l~--~~~~aD~i~vl~~- 263 (306)
T 3nh6_A 188 GLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRLS--TVVNADQILVIKD- 263 (306)
T ss_dssp SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHH-TTSEEEEECCSHH--HHHTCSEEEEEET-
T ss_pred cCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEEcChH--HHHcCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999985 5799999999986 3455999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 264 G~iv~~G~~~ 273 (306)
T 3nh6_A 264 GCIVERGRHE 273 (306)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999999854
No 63
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=3.1e-39 Score=342.26 Aligned_cols=188 Identities=20% Similarity=0.280 Sum_probs=160.4
Q ss_pred ccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCC
Q 001400 838 LEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 838 ~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
.+++ .+|+||||+|++||+++|+||||||||||+++|+|... +.+|+|.++|.+.. ..++.+||++|++.+++.+
T Consensus 19 ~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~ 93 (214)
T 1sgw_A 19 GYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK--PLKGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKI 93 (214)
T ss_dssp ESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEETTEEGG--GGGGGEEEECSSCCCCTTS
T ss_pred EeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCeEEEECCEEhh--hhcCcEEEEeCCCcCCCCC
Confidence 3455 79999999999999999999999999999999999876 56899999998765 3567799999999999999
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
||+||+.++...+.. .. . .+.++++++.+++.+. +... .+||||||||++|||||+.+|++|||||||+
T Consensus 94 tv~enl~~~~~~~~~-~~---~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqrv~laraL~~~p~lllLDEPts 162 (214)
T 1sgw_A 94 SVEDYLKAVASLYGV-KV---N-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRRVQLASTLLVNAEIYVLDDPVV 162 (214)
T ss_dssp BHHHHHHHHHHHTTC-CC---C-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHHHHHHHHTTSCCSEEEEESTTT
T ss_pred CHHHHHHHHHHhcCC-ch---H-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCCc
Confidence 999999987543221 11 1 3457889999999876 5543 5799999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 998 GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 998 gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
|||+.++..+++.|+++.++|+|||++||+++ .+...+|+++++
T Consensus 163 ~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~ 206 (214)
T 1sgw_A 163 AIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY 206 (214)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe
Confidence 99999999999999998766899999999987 466667777654
No 64
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.9e-38 Score=348.80 Aligned_cols=205 Identities=26% Similarity=0.387 Sum_probs=172.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC-CCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD-WQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 226 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.....++.++||+|++ ..++.+||
T Consensus 20 ~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~---~G~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~tv 96 (266)
T 2yz2_A 20 KKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT---SGDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAERV 96 (266)
T ss_dssp EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEECCHHHHGGGEEEECSSGGGGCCCSSH
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CcEEEECCEECchHHhhhhEEEEeccchhhcCCCcH
Confidence 46999999999999999999999999999999999999876 999999998875322246799999995 46778999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc--ccccccccCccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD--TCADTLVGDEML 304 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~--~~~dt~vg~~~~ 304 (1085)
+||+.|+.... ... .....+++++++.+||+ +..+..+
T Consensus 97 ~enl~~~~~~~-~~~----------------------------------~~~~~~~~~~l~~~gl~~~~~~~~~~----- 136 (266)
T 2yz2_A 97 FDEVAFAVKNF-YPD----------------------------------RDPVPLVKKAMEFVGLDFDSFKDRVP----- 136 (266)
T ss_dssp HHHHHHTTTTT-CTT----------------------------------SCSHHHHHHHHHHTTCCHHHHTTCCG-----
T ss_pred HHHHHHHHHhc-CCH----------------------------------HHHHHHHHHHHHHcCcCCcccccCCh-----
Confidence 99999864321 000 01123478899999998 7777655
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+. +++|+.++|+..++..+||++++|++|
T Consensus 137 ~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tii~vtHd~~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 137 FFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTL--GKTVILISHDIETVINHVDRVVVLEKG 214 (266)
T ss_dssp GGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCCTTTGGGCSEEEEEETT
T ss_pred hhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHc--CCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 469999999999999999999999999999999999999999999998764 445666888888999999999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
++++.|+.+++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999888754
No 65
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=3.4e-38 Score=348.27 Aligned_cols=209 Identities=24% Similarity=0.298 Sum_probs=169.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC--CCC---CCceEEEEccCCCCC-
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK--EFV---PPRTSAYVSQQDWQV- 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~--~~~---~~~~~~yv~Q~d~~~- 221 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ... .++.++||+|++.++
T Consensus 34 ~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (279)
T 2ihy_A 34 KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPAT---SGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKF 110 (279)
T ss_dssp EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTS
T ss_pred EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---CeEEEECCEEcccccCCHHHHcCcEEEEEcCccccc
Confidence 46999999999999999999999999999999999999876 999999998875 322 135799999997533
Q ss_pred -CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 222 -AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 222 -~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
+.+||+||+.|+..... . .+. .+. .+...+++++++.+||++..+..++
T Consensus 111 ~~~ltv~enl~~~~~~~~-~-~~~--------------~~~--------------~~~~~~~~~~l~~~gl~~~~~~~~~ 160 (279)
T 2ihy_A 111 QEGERVIDVVISGAFKSI-G-VYQ--------------DID--------------DEIRNEAHQLLKLVGMSAKAQQYIG 160 (279)
T ss_dssp CTTSBHHHHHHTTC-------------------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBGG
T ss_pred CCCCCHHHHHHhhhhhcc-c-ccc--------------CCc--------------HHHHHHHHHHHHHcCChhHhcCChh
Confidence 35699999988532100 0 000 000 0012347889999999887776654
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEE-EEEecChhHHHhhcCeEE
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTV-ISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~i-i~~~q~~~~~~~~~D~ii 379 (1085)
.|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++.+. +.|+. +.++|+..++..+||+|+
T Consensus 161 -----~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~~~~~~~~d~v~ 234 (279)
T 2ihy_A 161 -----YLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFIEEITANFSKIL 234 (279)
T ss_dssp -----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCGGGCCTTCCEEE
T ss_pred -----hCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCHHHHHHhCCEEE
Confidence 69999999999999999999999999999999999999999999998764 55550 557899999999999999
Q ss_pred EecCCeEEEecChhhH
Q 001400 380 LLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~ 395 (1085)
+|++|++++.|+++++
T Consensus 235 ~l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 235 LLKDGQSIQQGAVEDI 250 (279)
T ss_dssp EEETTEEEEEEEHHHH
T ss_pred EEECCEEEEECCHHHH
Confidence 9999999999998776
No 66
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=5.2e-38 Score=341.32 Aligned_cols=200 Identities=26% Similarity=0.396 Sum_probs=162.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+.+|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 22 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 97 (247)
T 2ff7_A 22 PVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPE---NGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R 97 (247)
T ss_dssp CEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999998865432 357999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc-------cc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA-------DT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-------dt 297 (1085)
||+||+.|+.. ... ...++.+++.+|+.+.. ++
T Consensus 98 tv~enl~~~~~----~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 137 (247)
T 2ff7_A 98 SIIDNISLANP----GMS------------------------------------VEKVIYAAKLAGAHDFISELREGYNT 137 (247)
T ss_dssp BHHHHHTTTCT----TCC------------------------------------HHHHHHHHHHHTCHHHHHTSTTGGGC
T ss_pred cHHHHHhccCC----CCC------------------------------------HHHHHHHHHHhChHHHHHhCcchhhh
Confidence 99999987521 000 01134445555554432 34
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . +. +|+.++|+...+. .||+
T Consensus 138 ~~~-~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-g~-tviivtH~~~~~~-~~d~ 212 (247)
T 2ff7_A 138 IVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-K-GR-TVIIIAHRLSTVK-NADR 212 (247)
T ss_dssp BCS-TTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-T-TS-EEEEECSSGGGGT-TSSE
T ss_pred hhh-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-C-CC-EEEEEeCCHHHHH-hCCE
Confidence 444 3456899999999999999999999999999999999999999999999984 2 44 5555778777664 5999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+++++.
T Consensus 213 v~~l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 213 IIVMEKGKIVEQGKHKELL 231 (247)
T ss_dssp EEEEETTEEEEEECHHHHH
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988774
No 67
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-38 Score=344.67 Aligned_cols=199 Identities=26% Similarity=0.403 Sum_probs=164.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|... +.+|+|.++|.++.. ..+++.+||++|++.+++ .
T Consensus 14 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 14 SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ--PTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC--CSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 4568999999999999999999999999999999999876 468999999987643 235667999999998877 5
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccccc-------CCCCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALI-------GLPGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-------~~~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
||+||+.|+.. + ... .+.++++++.+++.+..+... +. .+.+||||||||++|||||+.+|+||
T Consensus 91 tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-~~~~LSgGq~qrv~lAral~~~p~ll 161 (243)
T 1mv5_A 91 TIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGE-RGVKISGGQRQRLAIARAFLRNPKIL 161 (243)
T ss_dssp EHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEEST-TSBCCCHHHHHHHHHHHHHHHCCSEE
T ss_pred cHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhcc-CcCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999987521 1 111 134678888888877655431 11 23579999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
+|||||+|||+.++..+++.|+++. +|+|||++||+++ ..+.||++++|++ |++++.|+..
T Consensus 162 lLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~~ 222 (243)
T 1mv5_A 162 MLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS--TIVDADKIYFIEK-GQITGSGKHN 222 (243)
T ss_dssp EEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH--HHHHCSEEEEEET-TEECCCSCHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH--HHHhCCEEEEEEC-CEEEEeCCHH
Confidence 9999999999999999999999987 6999999999975 3356999999985 7888877653
No 68
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.6e-38 Score=345.60 Aligned_cols=209 Identities=22% Similarity=0.347 Sum_probs=165.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|||+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++..... ++.++||+|++.+++ .
T Consensus 32 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (271)
T 2ixe_A 32 VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT---GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R 107 (271)
T ss_dssp SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S
T ss_pred ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEcccCCHHHHhccEEEEecCCcccc-c
Confidence 46999999999999999999999999999999999999876 9999999988754322 356999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh--CCcccccccccCc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL--GLDTCADTLVGDE 302 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~dt~vg~~ 302 (1085)
||+|||.|+.... . ..+...+.. . ...++.+++.+ ||+...+.
T Consensus 108 tv~enl~~~~~~~--~-~~~~~~~~~---~------------------------~~~~~~~l~~l~~gl~~~~~~----- 152 (271)
T 2ixe_A 108 SFRENIAYGLTRT--P-TMEEITAVA---M------------------------ESGAHDFISGFPQGYDTEVGE----- 152 (271)
T ss_dssp BHHHHHHTTCSSC--C-CHHHHHHHH---H------------------------HHTCHHHHHHSTTGGGSBCCG-----
T ss_pred cHHHHHhhhcccC--C-hHHHHHHHH---H------------------------HHhHHHHHHhhhcchhhhhcC-----
Confidence 9999999864211 0 000000000 0 11245567777 66655443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++.+.. +++|+.++|+...+. .||+|++|+
T Consensus 153 ~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-g~tviivtHd~~~~~-~~d~v~~l~ 230 (271)
T 2ixe_A 153 TGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWA-SRTVLLITQQLSLAE-RAHHILFLK 230 (271)
T ss_dssp GGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTT-TSEEEEECSCHHHHT-TCSEEEEEE
T ss_pred CcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhc-CCEEEEEeCCHHHHH-hCCEEEEEE
Confidence 345799999999999999999999999999999999999999999999875433 445666788887775 599999999
Q ss_pred CCeEEEecChhhHHH
Q 001400 383 EGQIVYQGPRVSVLD 397 (1085)
Q Consensus 383 ~G~iv~~G~~~~~~~ 397 (1085)
+|++++.|+++++..
T Consensus 231 ~G~i~~~g~~~~l~~ 245 (271)
T 2ixe_A 231 EGSVCEQGTHLQLME 245 (271)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999988753
No 69
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=6.6e-38 Score=341.54 Aligned_cols=205 Identities=22% Similarity=0.259 Sum_probs=163.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh--hCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR--LGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQV 221 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~--l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~ 221 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|. ++| .+|+|.++|.++..... ++.++||+|++.++
T Consensus 16 ~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 92 (250)
T 2d2e_A 16 ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTV---ERGEILLDGENILELSPDERARKGLFLAFQYPVEV 92 (250)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEE---EEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-C
T ss_pred EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCC---CceEEEECCEECCCCCHHHHHhCcEEEeccCCccc
Confidence 4699999999999999999999999999999999997 444 49999999998765432 23489999999999
Q ss_pred CCCCHHHHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC-cccccccc
Q 001400 222 AEMTVRETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLV 299 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~v 299 (1085)
+.+||+||+.++... .+.. ... .+...+++++++.+|| .+..++.+
T Consensus 93 ~~~tv~e~l~~~~~~~~~~~-------------------~~~-------------~~~~~~~~~~l~~~gl~~~~~~~~~ 140 (250)
T 2d2e_A 93 PGVTIANFLRLALQAKLGRE-------------------VGV-------------AEFWTKVKKALELLDWDESYLSRYL 140 (250)
T ss_dssp CSCBHHHHHHHHHHHHHTSC-------------------CCH-------------HHHHHHHHHHHHHHTCCGGGGGSBT
T ss_pred cCCCHHHHHHHHHHhhcccc-------------------CCH-------------HHHHHHHHHHHHHcCCChhHhcCCc
Confidence 999999999886421 1100 000 0012247788999999 46676655
Q ss_pred cCccccc-CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh-cCe
Q 001400 300 GDEMLKG-ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDD 377 (1085)
Q Consensus 300 g~~~~~~-LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ 377 (1085)
+ . |||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ . +++|+.++|+..++..+ +|+
T Consensus 141 ~-----~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tvi~vtHd~~~~~~~~~d~ 213 (250)
T 2d2e_A 141 N-----EGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-P-NFGALVITHYQRILNYIQPDK 213 (250)
T ss_dssp T-----CC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-T-TCEEEEECSSSGGGGTSCCSE
T ss_pred c-----cCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-c-CCEEEEEecCHHHHHHhcCCE
Confidence 3 5 999999999999999999999999999999999999999999998854 2 45566678888888888 599
Q ss_pred EEEecCCeEEEecChhh
Q 001400 378 VILLSEGQIVYQGPRVS 394 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~ 394 (1085)
|++|++|++++.|+++.
T Consensus 214 v~~l~~G~i~~~g~~~~ 230 (250)
T 2d2e_A 214 VHVMMDGRVVATGGPEL 230 (250)
T ss_dssp EEEEETTEEEEEESHHH
T ss_pred EEEEECCEEEEEeCHHH
Confidence 99999999999999873
No 70
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.4e-37 Score=340.58 Aligned_cols=196 Identities=26% Similarity=0.383 Sum_probs=159.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+||||+|++||++||+||||||||||+++|+|... + +|+|.++|.++.. ..+++.+||++|++.+++ .|
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~t 108 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD--A-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-ET 108 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC--C-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC--C-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-cC
Confidence 358999999999999999999999999999999999875 3 7999999987642 335677999999998876 59
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
|+||+.|+.. . .. .+.+.++++.+++.+..+ ...+. .+.+|||||||||+|||||+.+|+|||
T Consensus 109 v~enl~~~~~---~--~~----~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lll 178 (260)
T 2ghi_A 109 IKYNILYGKL---D--AT----DEEVIKATKSAQLYDFIEALPKKWDTIVGN-KGMKLSGGERQRIAIARCLLKDPKIVI 178 (260)
T ss_dssp HHHHHHTTCT---T--CC----HHHHHHHHHHTTCHHHHHTSTTGGGCEESS-SSBCCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C--CC----HHHHHHHHHHhCCHHHHHhccccccccccC-CcCcCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999987521 1 11 123556777777654322 11221 235799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||||+|||+.++..+++.|+++. +|+|||++||+++. + +.||++++|++ |+++..|+..
T Consensus 179 LDEPts~LD~~~~~~i~~~l~~l~-~~~tviivtH~~~~-~-~~~d~i~~l~~-G~i~~~g~~~ 238 (260)
T 2ghi_A 179 FDEATSSLDSKTEYLFQKAVEDLR-KNRTLIIIAHRLST-I-SSAESIILLNK-GKIVEKGTHK 238 (260)
T ss_dssp EECCCCTTCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-S-TTCSEEEEEET-TEEEEEECHH
T ss_pred EECccccCCHHHHHHHHHHHHHhc-CCCEEEEEcCCHHH-H-HhCCEEEEEEC-CEEEEECCHH
Confidence 999999999999999999999985 48999999999863 3 56999999985 7899888753
No 71
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1e-37 Score=338.75 Aligned_cols=202 Identities=23% Similarity=0.314 Sum_probs=165.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 15 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~ 90 (243)
T 1mv5_A 15 EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPT---AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G 90 (243)
T ss_dssp SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCS---BSCEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E
T ss_pred CceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999876 999999999875432 3467999999998776 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc-------
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT------- 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt------- 297 (1085)
||+||+.|+... ... ...++++++.+|+.+..+.
T Consensus 91 tv~enl~~~~~~---~~~------------------------------------~~~~~~~l~~~~l~~~~~~~~~gl~~ 131 (243)
T 1mv5_A 91 TIRENLTYGLEG---DYT------------------------------------DEDLWQVLDLAFARSFVENMPDQLNT 131 (243)
T ss_dssp EHHHHTTSCTTS---CSC------------------------------------HHHHHHHHHHHTCTTTTTSSTTGGGC
T ss_pred cHHHHHhhhccC---CCC------------------------------------HHHHHHHHHHhChHHHHHhCccchhc
Confidence 999999875210 000 1125566777787665443
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++ +.+..|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++. . + ++|+.++|+...+ ..||+
T Consensus 132 ~~~-~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~-~-~tvi~vtH~~~~~-~~~d~ 206 (243)
T 1mv5_A 132 EVG-ERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-K-G-RTTLVIAHRLSTI-VDADK 206 (243)
T ss_dssp EES-TTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-T-T-SEEEEECCSHHHH-HHCSE
T ss_pred hhc-cCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-C-C-CEEEEEeCChHHH-HhCCE
Confidence 333 3456899999999999999999999999999999999999999999999885 2 4 4555577877766 46999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++..
T Consensus 207 v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 207 IYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EEEEETTEECCCSCHHHHHH
T ss_pred EEEEECCEEEEeCCHHHHHh
Confidence 99999999999999887753
No 72
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.9e-37 Score=336.54 Aligned_cols=197 Identities=24% Similarity=0.352 Sum_probs=169.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~lT 225 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++| . |+|.++|.++..... ++.++|++|++.+++.+|
T Consensus 14 ~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 89 (249)
T 2qi9_C 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSG---K-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATP 89 (249)
T ss_dssp TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC---E-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCB
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---C-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCc
Confidence 489999999999999999999999999999999999865 4 999999988754321 356999999998889999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|+||+.|+.. .. . . ...++++++.+||++..+..+ .
T Consensus 90 v~e~l~~~~~-~~--~--~----------------------------------~~~~~~~l~~~~l~~~~~~~~-----~ 125 (249)
T 2qi9_C 90 VWHYLTLHQH-DK--T--R----------------------------------TELLNDVAGALALDDKLGRST-----N 125 (249)
T ss_dssp HHHHHHTTCS-ST--T--C----------------------------------HHHHHHHHHHTTCGGGTTSBG-----G
T ss_pred HHHHHHHhhc-cC--C--c----------------------------------HHHHHHHHHHcCChhHhcCCh-----h
Confidence 9999987521 00 0 0 123678899999988777654 4
Q ss_pred cCchhhhhHHHHHHHHhCCCc-------EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 306 GISGGQKKRLTTGELLVGPAR-------VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~-------vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.|||||||||+|||||+.+|+ +|+|||||+|||+.++..+.+.|+++++. +++|+.++|+..++..++|++
T Consensus 126 ~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~--g~tviivtHd~~~~~~~~d~v 203 (249)
T 2qi9_C 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQ--GLAIVMSSHDLNHTLRHAHRA 203 (249)
T ss_dssp GCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHCSEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhCCEE
Confidence 699999999999999999999 99999999999999999999999998754 445666889999999999999
Q ss_pred EEecCCeEEEecChhhH
Q 001400 379 ILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~ 395 (1085)
++|++|++++.|+++++
T Consensus 204 ~~l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEV 220 (249)
T ss_dssp EEEETTEEEEEEEHHHH
T ss_pred EEEECCEEEEeCCHHHH
Confidence 99999999999998776
No 73
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.4e-37 Score=336.59 Aligned_cols=200 Identities=23% Similarity=0.319 Sum_probs=161.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+++ +|+|.++|.++.... .++.++||+|++.+++ .
T Consensus 33 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~----~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 107 (260)
T 2ghi_A 33 HRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA----EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E 107 (260)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC----EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E
T ss_pred CceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC----CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c
Confidence 4699999999999999999999999999999999998753 799999998875432 2357999999998776 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-------CCcccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-------GLDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-------gL~~~~dt 297 (1085)
||+||+.|+.. ....+ .+.++++.+ ++++..||
T Consensus 108 tv~enl~~~~~----~~~~~------------------------------------~~~~~l~~~~l~~~~~~l~~~~~~ 147 (260)
T 2ghi_A 108 TIKYNILYGKL----DATDE------------------------------------EVIKATKSAQLYDFIEALPKKWDT 147 (260)
T ss_dssp EHHHHHHTTCT----TCCHH------------------------------------HHHHHHHHTTCHHHHHTSTTGGGC
T ss_pred CHHHHHhccCC----CCCHH------------------------------------HHHHHHHHhCCHHHHHhccccccc
Confidence 99999988521 00000 122233333 34555677
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.++. .+..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+ +. +|+.++|+...+ ..||+
T Consensus 148 ~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~--~~-tviivtH~~~~~-~~~d~ 222 (260)
T 2ghi_A 148 IVGN-KGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK--NR-TLIIIAHRLSTI-SSAES 222 (260)
T ss_dssp EESS-SSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT--TS-EEEEECSSGGGS-TTCSE
T ss_pred cccC-CcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC--CC-EEEEEcCCHHHH-HhCCE
Confidence 6654 4678999999999999999999999999999999999999999999998853 44 555577777766 46999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++..
T Consensus 223 i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 223 IILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 74
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=1.1e-36 Score=331.87 Aligned_cols=197 Identities=18% Similarity=0.236 Sum_probs=165.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.+ ++.++||+|++.+++.+||+
T Consensus 18 ~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~----------~~~i~~v~q~~~~~~~~tv~ 84 (253)
T 2nq2_C 18 NFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPI---QGKIEV----------YQSIGFVPQFFSSPFAYSVL 84 (253)
T ss_dssp TEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCS---EEEEEE----------CSCEEEECSCCCCSSCCBHH
T ss_pred CeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEE----------eccEEEEcCCCccCCCCCHH
Confidence 36999999999999999999999999999999999999876 999983 34799999999888899999
Q ss_pred HHHHHhhhhc-CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 ETLDFAGQCQ-GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||+.|+.... +.... +. .....+++++++.+||.+..+..+ .+
T Consensus 85 enl~~~~~~~~~~~~~-----------------~~--------------~~~~~~~~~~l~~~~l~~~~~~~~-----~~ 128 (253)
T 2nq2_C 85 DIVLMGRSTHINTFAK-----------------PK--------------SHDYQVAMQALDYLNLTHLAKREF-----TS 128 (253)
T ss_dssp HHHHGGGGGGSCTTCC-----------------CC--------------HHHHHHHHHHHHHTTCGGGTTSBG-----GG
T ss_pred HHHHHhhhhhcccccC-----------------CC--------------HHHHHHHHHHHHHcCChHHhcCCh-----hh
Confidence 9999864321 10000 00 001224788999999998777654 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++.+.. +++|+.++|+..++..+||++++|++|+
T Consensus 129 LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~-g~tvi~vtHd~~~~~~~~d~v~~l~~G~- 206 (253)
T 2nq2_C 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQ-NMTVVFTTHQPNQVVAIANKTLLLNKQN- 206 (253)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTS-CCEEEEEESCHHHHHHHCSEEEEEETTE-
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc-CCEEEEEecCHHHHHHhCCEEEEEeCCe-
Confidence 99999999999999999999999999999999999999999999987643 4456668899999999999999999999
Q ss_pred EEecChhhH
Q 001400 387 VYQGPRVSV 395 (1085)
Q Consensus 387 v~~G~~~~~ 395 (1085)
++.|+++++
T Consensus 207 ~~~g~~~~~ 215 (253)
T 2nq2_C 207 FKFGETRNI 215 (253)
T ss_dssp EEEEEHHHH
T ss_pred EecCCHHHH
Confidence 999998776
No 75
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=8.2e-37 Score=335.81 Aligned_cols=223 Identities=22% Similarity=0.242 Sum_probs=172.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC----CceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP----PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~----~~~~~yv~Q~d~~~~~ 223 (1085)
+++|+|+|+.|++|++++|+|||||||||||++|+|.+.. .+.+|+|.++|.++..... ++.++||+|++.+++.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~-~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDY-EVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTC-EEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCCCeEEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 4699999999999999999999999999999999998421 1349999999988754332 2348999999999999
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDE 302 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~ 302 (1085)
+||+|++.+..... . ...+...... .+...+++++++.+||+ ...+..++
T Consensus 112 ~tv~e~~~~~~~~~------------~---~~~~~~~~~~------------~~~~~~~~~~l~~~gl~~~~~~~~~~-- 162 (267)
T 2zu0_C 112 VSNQFFLQTALNAV------------R---SYRGQETLDR------------FDFQDLMEEKIALLKMPEDLLTRSVN-- 162 (267)
T ss_dssp CBHHHHHHHHHHHH------------H---HGGGCCCCCH------------HHHHHHHHHHHHHTTCCTTTTTSBTT--
T ss_pred ccHHHHHHHHHHhh------------h---hhhccccCCH------------HHHHHHHHHHHHHcCCChhHhcCCcc--
Confidence 99999998753100 0 0000000000 00123478899999996 45555443
Q ss_pred ccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh-cCeEEEe
Q 001400 303 MLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL-FDDVILL 381 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~-~D~ii~L 381 (1085)
.+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ . +++|+.++|+..++..+ +|+|++|
T Consensus 163 --~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~-g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 163 --VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-G-KRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp --TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-S-SCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred --cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-c-CCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 14999999999999999999999999999999999999999999998753 2 45566688888888776 8999999
Q ss_pred cCCeEEEecChhhHHHHHHhCCCC
Q 001400 382 SEGQIVYQGPRVSVLDFFASMGFS 405 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~~~f~~~G~~ 405 (1085)
++|++++.|+++++.. ++..||.
T Consensus 239 ~~G~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 239 YQGRIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp ETTEEEEEECTTHHHH-HHTTTCT
T ss_pred ECCEEEEEcCHHHHhh-hhhcchh
Confidence 9999999999987753 4444443
No 76
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3e-37 Score=337.43 Aligned_cols=190 Identities=21% Similarity=0.254 Sum_probs=161.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEE-EEccCCCCCCCCCHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISG-YCEQNDIHSPGLTVL 920 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~g-y~~Q~~~~~~~~tv~ 920 (1085)
..+|+|+||+|+ ||+++|+||||||||||+++|+|.. + .+|+|.++|.+......++.+| |++|++.+ .+||+
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p--~~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~ 91 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-P--YSGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTVN 91 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-C--CEEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBHH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-C--CCcEEEECCEECcchHHhhheEEEeCCCCcc--CCcHH
Confidence 579999999999 9999999999999999999999986 4 5899999998754211256799 99999877 88999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
||+.+....+ .. ..+.++++++.+++. +..+... .+||||||||++|||||+.+|++|||||||+||
T Consensus 92 enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~-----~~LSgGqkqRv~lAraL~~~p~lllLDEPts~L 159 (263)
T 2pjz_A 92 DIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKL-----YKLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159 (263)
T ss_dssp HHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBG-----GGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTC
T ss_pred HHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEECCcccc
Confidence 9998865432 11 124578899999998 7766553 479999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcC-EEEEEecCcEEEEecCC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFD-ELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d-~il~l~~gG~~~~~g~~ 1054 (1085)
|+.++..+++.|+++.+ |||++|||++ .+...|| ++++|++ |++++.|+.
T Consensus 160 D~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~-G~i~~~g~~ 210 (263)
T 2pjz_A 160 DAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVG-NRLQGPISV 210 (263)
T ss_dssp CHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEET-TEEEEEEEH
T ss_pred CHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEEC-CEEEEecCH
Confidence 99999999999998742 9999999986 3667899 9999985 788888864
No 77
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1e-36 Score=333.24 Aligned_cols=194 Identities=20% Similarity=0.200 Sum_probs=165.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEE-EEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~~~~~lTV 226 (1085)
+.+|+|+|+.++ |++++|+|||||||||||++|+|.+ |+ +|+|.++|.++.....++.++ |++|++.+ .+||
T Consensus 18 ~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~---~G~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~tv 90 (263)
T 2pjz_A 18 RFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PY---SGNIFINGMEVRKIRNYIRYSTNLPEAYEI--GVTV 90 (263)
T ss_dssp EEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CC---EEEEEETTEEGGGCSCCTTEEECCGGGSCT--TSBH
T ss_pred ceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CC---CcEEEECCEECcchHHhhheEEEeCCCCcc--CCcH
Confidence 469999999999 9999999999999999999999999 86 999999998764321256799 99999875 8999
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCc-ccccccccCcccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLD-TCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~dt~vg~~~~~ 305 (1085)
+||+.|+..... ....+++++++.+||. +..+..+ .
T Consensus 91 ~enl~~~~~~~~--------------------------------------~~~~~~~~~l~~~gl~~~~~~~~~-----~ 127 (263)
T 2pjz_A 91 NDIVYLYEELKG--------------------------------------LDRDLFLEMLKALKLGEEILRRKL-----Y 127 (263)
T ss_dssp HHHHHHHHHHTC--------------------------------------CCHHHHHHHHHHTTCCGGGGGSBG-----G
T ss_pred HHHHHHhhhhcc--------------------------------------hHHHHHHHHHHHcCCChhHhcCCh-----h
Confidence 999988543210 0012377889999998 7766554 4
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcC-eEEEecCC
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFD-DVILLSEG 384 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D-~ii~L~~G 384 (1085)
.|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++. . +|+.++|+..++..+|| ++++|++|
T Consensus 128 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~----~-tviivtHd~~~~~~~~d~~i~~l~~G 202 (263)
T 2pjz_A 128 KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYG----K-EGILVTHELDMLNLYKEYKAYFLVGN 202 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSC----S-EEEEEESCGGGGGGCTTSEEEEEETT
T ss_pred hCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhc----C-cEEEEEcCHHHHHHhcCceEEEEECC
Confidence 699999999999999999999999999999999999999999998753 2 56668899899999999 99999999
Q ss_pred eEEEecChhhHH
Q 001400 385 QIVYQGPRVSVL 396 (1085)
Q Consensus 385 ~iv~~G~~~~~~ 396 (1085)
++++.|+++++.
T Consensus 203 ~i~~~g~~~~l~ 214 (263)
T 2pjz_A 203 RLQGPISVSELL 214 (263)
T ss_dssp EEEEEEEHHHHH
T ss_pred EEEEecCHHHHH
Confidence 999999988774
No 78
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-37 Score=354.45 Aligned_cols=200 Identities=24% Similarity=0.293 Sum_probs=163.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
..+|+|||++|++||+++|+|||||||||||++|+|+++ . +|+|.++|+++....+ ++.++||+|++.+|+ +
T Consensus 34 ~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~---~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~ 108 (390)
T 3gd7_A 34 NAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-T---EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G 108 (390)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-E---EEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E
T ss_pred eEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-C---CeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-c
Confidence 469999999999999999999999999999999999875 3 8999999999876543 368999999998887 6
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC---
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD--- 301 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~--- 301 (1085)
||+||+.+... . ...+++++++.+||.+..+.....
T Consensus 109 tv~enl~~~~~-----~------------------------------------~~~~v~~~l~~~~L~~~~~~~p~~l~~ 147 (390)
T 3gd7_A 109 TFRKNLDPNAA-----H------------------------------------SDQEIWKVADEVGLRSVIEQFPGKLDF 147 (390)
T ss_dssp EHHHHHCTTCC-----S------------------------------------CHHHHHHHHHHTTCHHHHTTSTTGGGC
T ss_pred CHHHHhhhccc-----c------------------------------------CHHHHHHHHHHhCCHHHHhhccccccc
Confidence 99999964211 0 011356677888887655544321
Q ss_pred ---cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 302 ---EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 302 ---~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+...+|||||||||+|||||+.+|++|||||||||||+.++.++.+.|+++. .+++++.++|+. +....+|+|
T Consensus 148 ~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~---~~~tvi~vtHd~-e~~~~aDri 223 (390)
T 3gd7_A 148 VLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF---ADCTVILCEARI-EAMLECDQF 223 (390)
T ss_dssp EECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT---TTSCEEEECSSS-GGGTTCSEE
T ss_pred ccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh---CCCEEEEEEcCH-HHHHhCCEE
Confidence 2234599999999999999999999999999999999999999999998753 234555677775 456779999
Q ss_pred EEecCCeEEEecChhhHHH
Q 001400 379 ILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 379 i~L~~G~iv~~G~~~~~~~ 397 (1085)
++|++|+++..|+++++..
T Consensus 224 ~vl~~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 224 LVIEENKVRQYDSILELYH 242 (390)
T ss_dssp EEEETTEEEEESSHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998854
No 79
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=3e-36 Score=324.02 Aligned_cols=196 Identities=22% Similarity=0.316 Sum_probs=151.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+++|+|+|++|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++|++|++.+++. ||+
T Consensus 21 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 21 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp CCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCC---ccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 46999999999999999999999999999999999999876 99999998 48999999988875 999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+.... . ....+. ++.. .++..++. ++...+|.++. ....|
T Consensus 87 enl~~~~~~~----~-~~~~~~------------------~~~~---------~l~~~~~~--~~~~~~~~~~~-~~~~L 131 (229)
T 2pze_A 87 ENIIFGVSYD----E-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITL 131 (229)
T ss_dssp HHHHTTSCCC----H-HHHHHH------------------HHHT---------TCHHHHTT--STTGGGSCBCT-TCTTS
T ss_pred HHhhccCCcC----h-HHHHHH------------------HHHh---------CcHHHHHh--CcccccccccC-CCCcC
Confidence 9998853210 0 000000 0000 01111222 22334455553 35689
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||||||||+|||||+.+|++++|||||+|||+.++..+++.+ +++.+ + ++|+.++|+..++. .||++++|++|++
T Consensus 132 SgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~--~-~tvi~vtH~~~~~~-~~d~v~~l~~G~i 207 (229)
T 2pze_A 132 SGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMA--N-KTRILVTSKMEHLK-KADKILILHEGSS 207 (229)
T ss_dssp CHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTT--T-SEEEEECCCHHHHH-HCSEEEEEETTEE
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhC--C-CEEEEEcCChHHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999964 44422 3 45566778877764 5999999999999
Q ss_pred EEecChhhHH
Q 001400 387 VYQGPRVSVL 396 (1085)
Q Consensus 387 v~~G~~~~~~ 396 (1085)
++.|+++++.
T Consensus 208 ~~~g~~~~~~ 217 (229)
T 2pze_A 208 YFYGTFSELQ 217 (229)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988774
No 80
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-37 Score=352.33 Aligned_cols=198 Identities=22% Similarity=0.278 Sum_probs=164.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~ 916 (1085)
++..+|+||||+|++||+++|+|||||||||||++|+|... .+|+|.++|.++.. ..+++.+||++|++.+++
T Consensus 32 ~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~- 107 (390)
T 3gd7_A 32 GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN---TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS- 107 (390)
T ss_dssp SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE---EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCc-
Confidence 34679999999999999999999999999999999999864 57999999988653 335678999999999887
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCC------CCCCCCCHHHHHHHHHHHHHhcCCCEE
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGL------PGINGLSTEQRKRLTIAVELVANPSIV 990 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~~~~~LS~Gqrqrl~iA~aL~~~p~il 990 (1085)
+||+||+.+.. ... ++.++++++.+++.++.+..... ....+|||||||||+|||||+.+|+||
T Consensus 108 ~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 108 GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 69999996431 111 23477899999998776654321 112349999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||||||||||+..+..+++.|+++. .+.|+|++|||++ ....+|++++|++ |+++..|+..
T Consensus 178 LLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e--~~~~aDri~vl~~-G~i~~~g~~~ 238 (390)
T 3gd7_A 178 LLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE--AMLECDQFLVIEE-NKVRQYDSIL 238 (390)
T ss_dssp EEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG--GGTTCSEEEEEET-TEEEEESSHH
T ss_pred EEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH--HHHhCCEEEEEEC-CEEEEECCHH
Confidence 9999999999999999999999863 5899999999975 4456999999985 7999998754
No 81
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=2.7e-36 Score=324.39 Aligned_cols=186 Identities=24% Similarity=0.378 Sum_probs=149.0
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+++. ||+
T Consensus 20 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g----------~i~~v~q~~~~~~~-tv~ 86 (229)
T 2pze_A 20 GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQFSWIMPG-TIK 86 (229)
T ss_dssp SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSEEEEEECS----------CEEEECSSCCCCSB-CHH
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc--CCccEEEECC----------EEEEEecCCcccCC-CHH
Confidence 4578999999999999999999999999999999999876 5689999998 38999999988875 999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGA-------LIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-------~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.|+... ... ..+++++.+++.+..+. ..+. .+.+||||||||++|||||+.+|++||||
T Consensus 87 enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqrv~lAral~~~p~lllLD 155 (229)
T 2pze_A 87 ENIIFGVSY------DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLD 155 (229)
T ss_dssp HHHHTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT-TCTTSCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred HHhhccCCc------ChH----HHHHHHHHhCcHHHHHhCcccccccccC-CCCcCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 999875311 111 12334444454332221 1121 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 994 EPTSGLDARAAAIVMRT-VRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~-l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
|||+|||+.++..+++. ++++. +|+|||++||+++ ..+.||++++|++ |++++.|+.
T Consensus 156 EPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~--~~~~~d~v~~l~~-G~i~~~g~~ 213 (229)
T 2pze_A 156 SPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTF 213 (229)
T ss_dssp STTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHCSEEEEEET-TEEEEEECH
T ss_pred CcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH--HHHhCCEEEEEEC-CEEEEECCH
Confidence 99999999999999997 45553 4899999999975 3356999999985 688888864
No 82
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=326.73 Aligned_cols=187 Identities=25% Similarity=0.368 Sum_probs=148.6
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+|+||||+|++||++||+||||||||||+++|+|..+ +.+|+|.++| .+||++|++.+ +..||+
T Consensus 17 ~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~~-~~~tv~ 83 (237)
T 2cbz_A 17 DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD--KVEGHVAIKG----------SVAYVPQQAWI-QNDSLR 83 (237)
T ss_dssp SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE--EEEEEEEECS----------CEEEECSSCCC-CSEEHH
T ss_pred CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCceEEECC----------EEEEEcCCCcC-CCcCHH
Confidence 3568999999999999999999999999999999999876 6799999998 28999999864 578999
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
||+.++... . . . ..+++++.+++.+..+ ...+. .+.+||||||||++|||||+.+|+|||||
T Consensus 84 enl~~~~~~--~-~---~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~LSgGqkqRv~lAraL~~~p~lllLD 152 (237)
T 2cbz_A 84 ENILFGCQL--E-E---P----YYRSVIQACALLPDLEILPSGDRTEIGE-KGVNLSGGQKQRVSLARAVYSNADIYLFD 152 (237)
T ss_dssp HHHHTTSCC--C-T---T----HHHHHHHHTTCHHHHTTSTTGGGSEEST-TSBCCCHHHHHHHHHHHHHHHCCSEEEEE
T ss_pred HHhhCcccc--C-H---H----HHHHHHHHHhhHHHHHhccccccccccC-CCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999875321 1 1 1 1223344443321111 11121 23579999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHH---HHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 994 EPTSGLDARAAAIVMRTVR---NIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~---~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
|||+|||+.++..+++.|+ ++ .+|+|||++||+++. + ..||++++|++ |++++.|+..
T Consensus 153 EPts~LD~~~~~~i~~~l~~~~~~-~~~~tviivtH~~~~-~-~~~d~v~~l~~-G~i~~~g~~~ 213 (237)
T 2cbz_A 153 DPLSAVDAHVGKHIFENVIGPKGM-LKNKTRILVTHSMSY-L-PQVDVIIVMSG-GKISEMGSYQ 213 (237)
T ss_dssp STTTTSCHHHHHHHHHHTTSTTST-TTTSEEEEECSCSTT-G-GGSSEEEEEET-TEEEEEECHH
T ss_pred CcccccCHHHHHHHHHHHHHHHhh-cCCCEEEEEecChHH-H-HhCCEEEEEeC-CEEEEeCCHH
Confidence 9999999999999999995 33 358999999999874 3 57999999985 7888888753
No 83
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.3e-36 Score=326.45 Aligned_cols=196 Identities=23% Similarity=0.347 Sum_probs=151.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++. ++.+||+
T Consensus 18 ~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~-~~~~tv~ 83 (237)
T 2cbz_A 18 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV---EGHVAIKG----------SVAYVPQQAW-IQNDSLR 83 (237)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEE---EEEEEECS----------CEEEECSSCC-CCSEEHH
T ss_pred CceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CceEEECC----------EEEEEcCCCc-CCCcCHH
Confidence 46999999999999999999999999999999999998765 99999998 4899999986 5688999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCC-cccccccccCccccc
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGL-DTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL-~~~~dt~vg~~~~~~ 306 (1085)
||+.|+.... ... ..+. .+ ...+++.+++ +...+|.++ +.+..
T Consensus 84 enl~~~~~~~--~~~---~~~~------------------~~------------~~~l~~~~~~~~~~~~~~~~-~~~~~ 127 (237)
T 2cbz_A 84 ENILFGCQLE--EPY---YRSV------------------IQ------------ACALLPDLEILPSGDRTEIG-EKGVN 127 (237)
T ss_dssp HHHHTTSCCC--TTH---HHHH------------------HH------------HTTCHHHHTTSTTGGGSEES-TTSBC
T ss_pred HHhhCccccC--HHH---HHHH------------------HH------------HHhhHHHHHhcccccccccc-CCCCC
Confidence 9998853211 000 0000 00 0001222333 222344444 44668
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHH---HHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLK---HSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~---~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+ .+. .+++|+.++|+...+ ..||+|++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~---~~~tviivtH~~~~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML---KNKTRILVTHSMSYL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT---TTSEEEEECSCSTTG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc---CCCEEEEEecChHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999985 332 244555577777765 57999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|++++.|+++++.+
T Consensus 204 G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 204 GKISEMGSYQELLA 217 (237)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CEEEEeCCHHHHhh
Confidence 99999999988753
No 84
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.4e-36 Score=368.60 Aligned_cols=208 Identities=25% Similarity=0.387 Sum_probs=166.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.++|+++.+... ++.++||+|++++++.
T Consensus 354 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~- 429 (578)
T 4a82_A 354 APILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVT---SGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD- 429 (578)
T ss_dssp CCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCS---EEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSS-
T ss_pred CcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCC---CcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcc-
Confidence 46999999999999999999999999999999999999886 9999999998876542 4579999999998875
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.|+... ...+.+.+.++. .+ .++. .-.+++..||.+|+. .
T Consensus 430 tv~eni~~~~~~----~~~~~~~~~~~~---~~------------------------~~~~--~~~lp~g~~t~~~~~-g 475 (578)
T 4a82_A 430 TVKENILLGRPT----ATDEEVVEAAKM---AN------------------------AHDF--IMNLPQGYDTEVGER-G 475 (578)
T ss_dssp BHHHHHGGGCSS----CCHHHHHHHHHH---TT------------------------CHHH--HHTSTTGGGCBCCGG-G
T ss_pred cHHHHHhcCCCC----CCHHHHHHHHHH---hC------------------------cHHH--HHhCcchhhhhhccC-C
Confidence 999999885311 111111111100 00 0111 224667889999864 5
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++++|||||||||+.++..+.+.++++.+ ++|+ +.++|+.+.+ ..||+|++|++|
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t~-i~itH~l~~~-~~~d~i~~l~~G 551 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTT-LIVAHRLSTI-THADKIVVIENG 551 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEE-EEECSSGGGT-TTCSEEEEEETT
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEE-EEEecCHHHH-HcCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998743 4454 5577877776 459999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 552 ~i~~~g~~~el~~ 564 (578)
T 4a82_A 552 HIVETGTHRELIA 564 (578)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 85
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=3.7e-36 Score=366.95 Aligned_cols=208 Identities=27% Similarity=0.383 Sum_probs=166.7
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|. +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 431 (587)
T 3qf4_A 356 DPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPE---RGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS-G 431 (587)
T ss_dssp CCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCS---EEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-E
T ss_pred CcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC---CcEEEECCEEcccCCHHHHHhheEEECCCCcCcC-c
Confidence 46999999999999999999999999999999999999886 9999999999876543 467999999999886 4
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++... ...+...+.+ +..+ .++. .-.+++..||.+|+. .
T Consensus 432 tv~eni~~~~~~----~~~~~~~~~~---~~~~------------------------~~~~--i~~l~~g~~~~~~~~-~ 477 (587)
T 3qf4_A 432 TIKENLKWGRED----ATDDEIVEAA---KIAQ------------------------IHDF--IISLPEGYDSRVERG-G 477 (587)
T ss_dssp EHHHHHTTTCSS----CCHHHHHHHH---HHTT------------------------CHHH--HHTSSSGGGCEECSS-S
T ss_pred cHHHHHhccCCC----CCHHHHHHHH---HHhC------------------------cHHH--HHhcccchhhHhcCC-C
Confidence 999999875321 0001111100 0000 1111 124667788999864 5
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++|+||||||+||+.++..|.+.++++.+ ++ +++.++|..+.+ ..||+|++|++|
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~-tvi~itH~l~~~-~~~d~i~vl~~G 553 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTK--GC-TTFIITQKIPTA-LLADKILVLHEG 553 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHST--TC-EEEEEESCHHHH-TTSSEEEEEETT
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCC--CC-EEEEEecChHHH-HhCCEEEEEECC
Confidence 67999999999999999999999999999999999999999999998742 44 455577777765 589999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 554 ~i~~~g~~~el~~ 566 (587)
T 3qf4_A 554 KVAGFGTHKELLE 566 (587)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999999864
No 86
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-36 Score=321.92 Aligned_cols=188 Identities=18% Similarity=0.243 Sum_probs=156.1
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|+ +|+|.++|.++. ..++.++||+|++.+++.+||+|
T Consensus 23 ~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g~~~~--~~~~~i~~v~q~~~~~~~~tv~e 97 (214)
T 1sgw_A 23 PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPL---KGEIIYNGVPIT--KVKGKIFFLPEEIIVPRKISVED 97 (214)
T ss_dssp EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCS---EEEEEETTEEGG--GGGGGEEEECSSCCCCTTSBHHH
T ss_pred eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CeEEEECCEEhh--hhcCcEEEEeCCCcCCCCCCHHH
Confidence 6999999999999999999999999999999999999876 999999998775 23567999999998899999999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+.|+....+. . .. ..+++++++.+||++. +.. +..||
T Consensus 98 nl~~~~~~~~~-~----------------------------------~~-~~~~~~~l~~~gl~~~-~~~-----~~~LS 135 (214)
T 1sgw_A 98 YLKAVASLYGV-K----------------------------------VN-KNEIMDALESVEVLDL-KKK-----LGELS 135 (214)
T ss_dssp HHHHHHHHTTC-C----------------------------------CC-HHHHHHHHHHTTCCCT-TSB-----GGGSC
T ss_pred HHHHHHHhcCC-c----------------------------------hH-HHHHHHHHHHcCCCcC-CCC-----hhhCC
Confidence 99886432210 0 00 2247788999999865 544 45799
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++.+. +. +|+.++|+..++..++|+|+++ .|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~-g~-tiiivtHd~~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKE-KG-IVIISSREELSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHH-HS-EEEEEESSCCTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhC-CC-EEEEEeCCHHHHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999999998753 34 4555778888888888887754 4443
No 87
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.6e-35 Score=362.71 Aligned_cols=203 Identities=24% Similarity=0.392 Sum_probs=166.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 357 ~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~ 432 (595)
T 2yl4_A 357 VPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPA---SGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS-C 432 (595)
T ss_dssp SEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCS---EEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CcEEEECCEEhhhCCHHHHHhceEEEccCCcccC-C
Confidence 46999999999999999999999999999999999999876 9999999999876543 357999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-------Ccccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1085)
||+||+.|+..... ... +..++++++.+| +++..||
T Consensus 433 tv~eni~~~~~~~~-~~~------------------------------------~~~~~~~~~~~~l~~~~~~l~~g~~~ 475 (595)
T 2yl4_A 433 SIAENIAYGADDPS-SVT------------------------------------AEEIQRVAEVANAVAFIRNFPQGFNT 475 (595)
T ss_dssp BHHHHHHTTSSSTT-TSC------------------------------------HHHHHHHHHHTTCHHHHHTSSSGGGC
T ss_pred CHHHHHhhcCCCcc-ccC------------------------------------HHHHHHHHHHcCCHHHHHhCcccccc
Confidence 99999998632100 000 011334444444 4567899
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++| ++.++|+...+ ..||+
T Consensus 476 ~~~~~-~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 550 (595)
T 2yl4_A 476 VVGEK-GVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--GRT-VLVIAHRLSTI-KNANM 550 (595)
T ss_dssp BCSSS-SCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT--TSE-EEEECCCHHHH-HHSSE
T ss_pred cccCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc--CCE-EEEEecCHHHH-HcCCE
Confidence 99864 567999999999999999999999999999999999999999999998864 444 55577777666 46999
Q ss_pred EEEecCCeEEEecChhhHH
Q 001400 378 VILLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~ 396 (1085)
|++|++|++++.|+++++.
T Consensus 551 i~~l~~G~i~~~g~~~~l~ 569 (595)
T 2yl4_A 551 VAVLDQGKITEYGKHEELL 569 (595)
T ss_dssp EEEEETTEEEEEECSCC--
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999998875
No 88
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.8e-35 Score=361.42 Aligned_cols=202 Identities=24% Similarity=0.368 Sum_probs=165.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+.. .++.++||+|++.+++ .
T Consensus 356 ~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b5x_A 356 KPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVD---SGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D 431 (582)
T ss_pred ccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCC---CCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c
Confidence 46999999999999999999999999999999999999886 999999999886543 2467999999998886 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-------Ccccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1085)
||+||+.++.. . ....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~~~~~~l~~~~~~~p~g~~t 472 (582)
T 3b5x_A 432 TIANNIAYAAE-G--EYTRE------------------------------------QIEQAARQAHAMEFIENMPQGLDT 472 (582)
T ss_pred cHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHCCCHHHHHhCcccccc
Confidence 99999988531 0 00000 1222333333 3456789
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+|+. ..+||||||||++|||||+.+|++|+|||||||||+.++..+.+.|+++.+ ++|+ +.++|+...+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tv-i~itH~~~~~-~~~d~ 547 (582)
T 3b5x_A 473 VIGEN-GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK--NKTV-LVIAHRLSTI-EQADE 547 (582)
T ss_pred hhcCC-CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC--CCEE-EEEecCHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998753 4554 4466776665 47999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b5x_A 548 ILVVDEGEIIERGRHADLLA 567 (582)
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999988753
No 89
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.7e-35 Score=361.60 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=165.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
+++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~---~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~ 431 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDID---EGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-D 431 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCS---EEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-S
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCC---CCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-C
Confidence 46999999999999999999999999999999999999886 9999999999876532 357999999998887 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhC-------Ccccccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILG-------LDTCADT 297 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lg-------L~~~~dt 297 (1085)
||+||+.|+.. . ....+ .++++++.+| +++..||
T Consensus 432 tv~eni~~~~~-~--~~~~~------------------------------------~~~~~l~~~~l~~~~~~~p~g~~~ 472 (582)
T 3b60_A 432 TVANNIAYART-E--EYSRE------------------------------------QIEEAARMAYAMDFINKMDNGLDT 472 (582)
T ss_dssp BHHHHHHTTTT-S--CCCHH------------------------------------HHHHHHHTTTCHHHHHHSTTGGGS
T ss_pred CHHHHHhccCC-C--CCCHH------------------------------------HHHHHHHHcCCHHHHHhccccccc
Confidence 99999998531 0 00000 1222333333 4456789
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
.+|+. ..+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+ ..||+
T Consensus 473 ~~~~~-~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-vi~itH~~~~~-~~~d~ 547 (582)
T 3b60_A 473 IIGEN-GVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRT-SLVIAHRLSTI-EQADE 547 (582)
T ss_dssp BCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSE-EEEECSCGGGT-TTCSE
T ss_pred cccCC-CCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCE-EEEEeccHHHH-HhCCE
Confidence 99864 568999999999999999999999999999999999999999999998853 455 44566776665 57999
Q ss_pred EEEecCCeEEEecChhhHHH
Q 001400 378 VILLSEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 378 ii~L~~G~iv~~G~~~~~~~ 397 (1085)
|++|++|++++.|+++++.+
T Consensus 548 i~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 548 IVVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEEETTEEEEEECHHHHHH
T ss_pred EEEEECCEEEEecCHHHHHH
Confidence 99999999999999998864
No 90
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=7.1e-36 Score=365.56 Aligned_cols=208 Identities=23% Similarity=0.317 Sum_probs=165.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAEM 224 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~l 224 (1085)
.++|+|+|+++++||+++|+||||||||||+++|+|.++|+ +|+|.+||+++.+... ++.++||+|++.+++ .
T Consensus 368 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~---~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~ 443 (598)
T 3qf4_B 368 KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVD---RGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-T 443 (598)
T ss_dssp SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-S
T ss_pred CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCC---CeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc-c
Confidence 46999999999999999999999999999999999999886 9999999998876543 467999999998775 5
Q ss_pred CHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccc
Q 001400 225 TVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEML 304 (1085)
Q Consensus 225 TV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~ 304 (1085)
||+||+.++... ...+.+.+.+ ...+ .+..+ -.+++..||.+|+. .
T Consensus 444 tv~eni~~~~~~----~~~~~~~~~~---------------------~~~~------~~~~~--~~~~~g~~t~~~~~-g 489 (598)
T 3qf4_B 444 TVKENLKYGNPG----ATDEEIKEAA---------------------KLTH------SDHFI--KHLPEGYETVLTDN-G 489 (598)
T ss_dssp BHHHHHHSSSTT----CCTTHHHHHT---------------------TTTT------CHHHH--HTSTTGGGCBCHHH-H
T ss_pred cHHHHHhcCCCC----CCHHHHHHHH---------------------HHhC------CHHHH--HhccccccchhcCC-C
Confidence 999999885321 0001111000 0000 11111 23566788999864 4
Q ss_pred ccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 305 KGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
.+|||||||||+|||||+.+|++|+|||||||||+.++..+.+.++++.+ ++| ++.++|....+. .||+|++|++|
T Consensus 490 ~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~t-~i~itH~l~~~~-~~d~i~~l~~G 565 (598)
T 3qf4_B 490 EDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLME--GKT-SIIIAHRLNTIK-NADLIIVLRDG 565 (598)
T ss_dssp TTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHT--TSE-EEEESCCTTHHH-HCSEEEEECSS
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcC--CCE-EEEEecCHHHHH-cCCEEEEEECC
Confidence 57999999999999999999999999999999999999999999998753 445 455777777664 49999999999
Q ss_pred eEEEecChhhHHH
Q 001400 385 QIVYQGPRVSVLD 397 (1085)
Q Consensus 385 ~iv~~G~~~~~~~ 397 (1085)
+++++|+++++.+
T Consensus 566 ~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 566 EIVEMGKHDELIQ 578 (598)
T ss_dssp SEEECSCHHHHHH
T ss_pred EEEEECCHHHHHh
Confidence 9999999998864
No 91
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=2.6e-35 Score=359.51 Aligned_cols=212 Identities=24% Similarity=0.399 Sum_probs=170.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++. ++..+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 339 ~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 405 (578)
T 4a82_A 339 RIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGHNI 405 (578)
T ss_dssp CEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC--CCCcEEEECCEEh
Confidence 4667777665421 23568999999999999999999999999999999999876 5699999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~ 965 (1085)
+. ..+++.+|||+|++.+++. ||+||+.++. +. .. ++.++++++..++.+.. +..++..
T Consensus 406 ~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~~-~~----~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~- 474 (578)
T 4a82_A 406 KDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----PT-AT----DEEVVEAAKMANAHDFIMNLPQGYDTEVGER- 474 (578)
T ss_dssp GGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----SS-CC----HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGG-
T ss_pred hhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----CC-CC----HHHHHHHHHHhCcHHHHHhCcchhhhhhccC-
Confidence 53 3467789999999998876 9999998763 11 11 12355666666664432 2223322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+|||||||||+.+++.+.+.++++. +++|+|++|||++. .+.||++++|++
T Consensus 475 g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~- 550 (578)
T 4a82_A 475 GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIEN- 550 (578)
T ss_dssp GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEET-
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-
Confidence 34799999999999999999999999999999999999999999999874 58999999999873 467999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 551 G~i~~~g~~~ 560 (578)
T 4a82_A 551 GHIVETGTHR 560 (578)
T ss_dssp TEEEEEECHH
T ss_pred CEEEEECCHH
Confidence 7999999854
No 92
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=5.9e-35 Score=357.76 Aligned_cols=216 Identities=25% Similarity=0.372 Sum_probs=174.5
Q ss_pred eeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC
Q 001400 817 MAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR 896 (1085)
Q Consensus 817 ~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~ 896 (1085)
+.++|+++.++. .++..+|+||||++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.
T Consensus 342 i~~~~v~~~y~~----------~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~i~ 409 (595)
T 2yl4_A 342 LEFKNVHFAYPA----------RPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD--PASGTISLDGHDIR 409 (595)
T ss_dssp EEEEEEEEECSS----------CTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSC--CSEEEEEETTEETT
T ss_pred EEEEEEEEEeCC----------CCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC--CCCcEEEECCEEhh
Confidence 667777665521 012469999999999999999999999999999999999876 56899999998865
Q ss_pred h---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCccc-------ccccCCCCC
Q 001400 897 Q---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLS-------GALIGLPGI 966 (1085)
Q Consensus 897 ~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~ 966 (1085)
. ..+++.+||++|++.+++. ||+||+.++...+ .... ++.++++++.+++.+.. +..++.. +
T Consensus 410 ~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~-~ 481 (595)
T 2yl4_A 410 QLNPVWLRSKIGTVSQEPILFSC-SIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVGEK-G 481 (595)
T ss_dssp TBCHHHHHHSEEEECSSCCCCSS-BHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCSSS-S
T ss_pred hCCHHHHHhceEEEccCCcccCC-CHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCcccccccccCC-C
Confidence 3 3456789999999998864 9999999863210 0111 24467888888875443 3333333 3
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++.+ |+|+|++||+++ ..+.||++++|++ |
T Consensus 482 ~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~--~~~~~d~i~~l~~-G 557 (595)
T 2yl4_A 482 VLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLS--TIKNANMVAVLDQ-G 557 (595)
T ss_dssp CCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHH--HHHHSSEEEEEET-T
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHcCCEEEEEEC-C
Confidence 57999999999999999999999999999999999999999999999865 899999999976 3467999999985 7
Q ss_pred EEEEecCCCC
Q 001400 1047 ELIYAGPLGS 1056 (1085)
Q Consensus 1047 ~~~~~g~~~~ 1056 (1085)
++++.|+..+
T Consensus 558 ~i~~~g~~~~ 567 (595)
T 2yl4_A 558 KITEYGKHEE 567 (595)
T ss_dssp EEEEEECSCC
T ss_pred EEEEECCHHH
Confidence 8999988654
No 93
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-35 Score=362.70 Aligned_cols=213 Identities=21% Similarity=0.302 Sum_probs=170.8
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ .++..+|+|+||+|++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~-----------~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~--~~~G~i~i~g~~i 407 (587)
T 3qf4_A 341 SVSFENVEFRYF-----------ENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID--PERGRVEVDELDV 407 (587)
T ss_dssp CEEEEEEEECSS-----------SSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC--CSEEEEEESSSBG
T ss_pred cEEEEEEEEEcC-----------CCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc--CCCcEEEECCEEc
Confidence 567777766552 123568999999999999999999999999999999999876 5699999999987
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcc-------cccccCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSL-------SGALIGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~ 965 (1085)
.. ..+++.+|||+|++.+++. |++||+.++.. .... +.++++++..++.+. .+..++..
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~- 476 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATD----DEIVEAAKIAQIHDFIISLPEGYDSRVERG- 476 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCH----HHHHHHHHHTTCHHHHHTSSSGGGCEECSS-
T ss_pred ccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCH----HHHHHHHHHhCcHHHHHhcccchhhHhcCC-
Confidence 53 3467789999999998865 99999987531 1111 224455555555332 22333333
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.++++. +|+|+|++|||++ ....||++++|++
T Consensus 477 ~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~--~~~~~d~i~vl~~- 552 (587)
T 3qf4_A 477 GRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIP--TALLADKILVLHE- 552 (587)
T ss_dssp SCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHH--HHTTSSEEEEEET-
T ss_pred CCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999974 5999999999976 4568999999985
Q ss_pred cEEEEecCCCC
Q 001400 1046 GELIYAGPLGS 1056 (1085)
Q Consensus 1046 G~~~~~g~~~~ 1056 (1085)
|++++.|+..+
T Consensus 553 G~i~~~g~~~e 563 (587)
T 3qf4_A 553 GKVAGFGTHKE 563 (587)
T ss_dssp TEEEEEECHHH
T ss_pred CEEEEECCHHH
Confidence 79999998643
No 94
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=2.6e-35 Score=359.95 Aligned_cols=197 Identities=26% Similarity=0.357 Sum_probs=164.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++.. ..+++.+||++|++.+++. |
T Consensus 356 ~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~--p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~-t 432 (582)
T 3b60_A 356 VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD--IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND-T 432 (582)
T ss_dssp CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC--CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-B
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC--CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCC-C
Confidence 568999999999999999999999999999999999876 568999999988653 3456789999999998875 9
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSG-------ALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
|+||+.++.. + +.. ++.++++++.+++.+..+ ..++.. +.+||||||||++|||||+++|+||+
T Consensus 433 v~eni~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~-~~~LSgGq~qrl~iAral~~~p~ill 503 (582)
T 3b60_A 433 VANNIAYART---E-EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGEN-GVLLSGGQRQRIAIARALLRDSPILI 503 (582)
T ss_dssp HHHHHHTTTT---S-CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCTT-SCSSCHHHHHHHHHHHHHHHCCSEEE
T ss_pred HHHHHhccCC---C-CCC----HHHHHHHHHHcCCHHHHHhccccccccccCC-CCCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999988531 1 111 234677888887765432 233333 35799999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
||||||+||+.+++.+++.++++. +|+|+|++||+++. .+.||++++|++ |++++.|+.
T Consensus 504 lDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~~--~~~~d~i~~l~~-G~i~~~g~~ 562 (582)
T 3b60_A 504 LDEATSALDTESERAIQAALDELQ-KNRTSLVIAHRLST--IEQADEIVVVED-GIIVERGTH 562 (582)
T ss_dssp EETTTSSCCHHHHHHHHHHHHHHH-TTSEEEEECSCGGG--TTTCSEEEEEET-TEEEEEECH
T ss_pred EECccccCCHHHHHHHHHHHHHHh-CCCEEEEEeccHHH--HHhCCEEEEEEC-CEEEEecCH
Confidence 999999999999999999999986 49999999999863 467999999985 789988874
No 95
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=2.9e-35 Score=359.58 Aligned_cols=213 Identities=24% Similarity=0.349 Sum_probs=172.7
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++. ++..+|+|+|+++++||++||+||||||||||+++|+|..+ +.+|+|.+||.++
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~~ 407 (582)
T 3b5x_A 341 EVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD--VDSGSICLDGHDV 407 (582)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC--CCCCEEEECCEEh
Confidence 4666666665420 12569999999999999999999999999999999999876 5689999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~ 965 (1085)
.. ..+++.+||++|++.+++. ||+||+.++.. + +.. ++.++++++.+++.+..+.. ++..
T Consensus 408 ~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~- 477 (582)
T 3b5x_A 408 RDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGEN- 477 (582)
T ss_pred hhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcCC-
Confidence 43 3467789999999998875 99999987531 1 111 23467888888876554332 2322
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.+++.+++.|+++. +|+|+|++||+++ ..+.||++++|++
T Consensus 478 ~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~~~--~~~~~d~i~~l~~- 553 (582)
T 3b5x_A 478 GTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ-KNKTVLVIAHRLS--TIEQADEILVVDE- 553 (582)
T ss_pred CCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHH--HHHhCCEEEEEEC-
Confidence 35799999999999999999999999999999999999999999999985 4999999999976 4467999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 554 G~i~~~g~~~ 563 (582)
T 3b5x_A 554 GEIIERGRHA 563 (582)
T ss_pred CEEEEECCHH
Confidence 7899888753
No 96
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-34 Score=355.05 Aligned_cols=211 Identities=25% Similarity=0.391 Sum_probs=167.9
Q ss_pred eeeeccceeeeeccccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 816 SMAFGNINYFVDVPVELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 816 ~~~~~~~~y~v~~~~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+.++|+++.++ ++..+|+|||+++++||++||+||||||||||+++|+|..+ +.+|+|.++|.++
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~~i 419 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD--VDRGQILVDGIDI 419 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC--CSEEEEEETTEEG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC--CCCeEEEECCEEh
Confidence 466666665542 23468999999999999999999999999999999999876 5699999999886
Q ss_pred Ch---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCC
Q 001400 896 RQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPG 965 (1085)
Q Consensus 896 ~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~ 965 (1085)
.. ..+++.+||++|++.+++ .||+||+.++.. ... ++.++++++.+++.+..+.+ ++. .
T Consensus 420 ~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~----~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~-~ 488 (598)
T 3qf4_B 420 RKIKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GAT----DEEIKEAAKLTHSDHFIKHLPEGYETVLTD-N 488 (598)
T ss_dssp GGSCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCC----TTHHHHHTTTTTCHHHHHTSTTGGGCBCHH-H
T ss_pred hhCCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCC----HHHHHHHHHHhCCHHHHHhccccccchhcC-C
Confidence 53 346778999999998886 599999987521 111 12244555555554332222 111 1
Q ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 966 INGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
+.+||||||||++|||||+++|+||+||||||+||+.++..+++.++++. +|+|+|++||+++. .+.||++++|++
T Consensus 489 g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~~- 564 (598)
T 3qf4_B 489 GEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT--IKNADLIIVLRD- 564 (598)
T ss_dssp HTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH--HHHCSEEEEECS-
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH--HHcCCEEEEEEC-
Confidence 24799999999999999999999999999999999999999999999985 69999999999873 456999999985
Q ss_pred cEEEEecCCC
Q 001400 1046 GELIYAGPLG 1055 (1085)
Q Consensus 1046 G~~~~~g~~~ 1055 (1085)
|++++.|+..
T Consensus 565 G~i~~~g~~~ 574 (598)
T 3qf4_B 565 GEIVEMGKHD 574 (598)
T ss_dssp SSEEECSCHH
T ss_pred CEEEEECCHH
Confidence 7899998754
No 97
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.5e-35 Score=386.35 Aligned_cols=213 Identities=25% Similarity=0.370 Sum_probs=169.8
Q ss_pred CcceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCC
Q 001400 145 RSKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQV 221 (1085)
Q Consensus 145 ~~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~ 221 (1085)
+.+.++|+|+|++|+|||.++|+||+|||||||+++|.|+++|. +|+|.+||.++.+... ++.++||||++.+|
T Consensus 1089 ~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~---~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF 1165 (1321)
T 4f4c_A 1089 RPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTL---GGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLF 1165 (1321)
T ss_dssp SCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCS---SSEEEETTEETTTBCHHHHHTTEEEECSSCCCC
T ss_pred CCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCC---CCEEEECCEEhhhCCHHHHHhheEEECCCCEee
Confidence 34557999999999999999999999999999999999999886 9999999999988753 57899999999877
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
. .||||||.|+..-. ....+.+.++++. ++ ..+. +-.|++..||.||+
T Consensus 1166 ~-gTIreNI~~gld~~--~~sd~ei~~Al~~---a~------------------------l~~~--I~~Lp~GldT~vge 1213 (1321)
T 4f4c_A 1166 D-CSIAENIIYGLDPS--SVTMAQVEEAARL---AN------------------------IHNF--IAELPEGFETRVGD 1213 (1321)
T ss_dssp S-EEHHHHHSSSSCTT--TSCHHHHHHHHHH---TT------------------------CHHH--HHTSTTTTCSEETT
T ss_pred C-ccHHHHHhccCCCC--CCCHHHHHHHHHH---hC------------------------ChHH--HHcCcCCCCCEecC
Confidence 6 59999998863211 0011111111110 00 0111 23578899999997
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
.+ .+||||||||++|||||+.+|+||+||||||+||+.|...|.+.|++..+ ++ |++++.|... +...||+|+||
T Consensus 1214 ~G-~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~--~~-TvI~IAHRLs-Ti~~aD~I~Vl 1288 (1321)
T 4f4c_A 1214 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRARE--GR-TCIVIAHRLN-TVMNADCIAVV 1288 (1321)
T ss_dssp TS-CSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSS--SS-EEEEECSSSS-TTTTCSEEEEE
T ss_pred CC-cccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcC--CC-EEEEeccCHH-HHHhCCEEEEE
Confidence 54 57999999999999999999999999999999999999999999987532 34 4555667654 45679999999
Q ss_pred cCCeEEEecChhhHHH
Q 001400 382 SEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~~~ 397 (1085)
++|+|+++|+++++++
T Consensus 1289 d~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1289 SNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp SSSSEEEEECHHHHHH
T ss_pred ECCEEEEECCHHHHHh
Confidence 9999999999999985
No 98
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=1.3e-34 Score=320.86 Aligned_cols=185 Identities=23% Similarity=0.383 Sum_probs=147.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+|+||||+|++|+++||+||||||||||+++|+|... +.+|+|.++| .+||++|++.+++. ||+|
T Consensus 51 ~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 51 TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE--PSEGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC--EEEEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC--CCCcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 358999999999999999999999999999999999876 6799999998 38999999988875 9999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccc-------cCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGAL-------IGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-------~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
|+. +. .. .. ...+++++.+++.+..+.. .+. .+.+||||||||++|||||+.+|++|||||
T Consensus 118 nl~-~~--~~----~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~LSgGq~QRv~lAraL~~~p~lllLDE 185 (290)
T 2bbs_A 118 NII-GV--SY----DE----YRYRSVIKACQLEEDISKFAEKDNIVLGE-GGITLSGGQRARISLARAVYKDADLYLLDS 185 (290)
T ss_dssp HHH-TT--CC----CH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCHHHHHHHHHHHHHHSCCSEEEEES
T ss_pred Hhh-Cc--cc----ch----HHHHHHHHHhChHHHHHhccccccchhcC-ccCcCCHHHHHHHHHHHHHHCCCCEEEEEC
Confidence 997 32 11 11 1123445555554322211 111 135799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHH-HHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCC
Q 001400 995 PTSGLDARAAAIVMRTV-RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLG 1055 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l-~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~ 1055 (1085)
||+|||+.++..+++.+ +++. +|+|||++||+++ ....||++++|++ |++++.|+..
T Consensus 186 Pts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~--~~~~~d~i~~l~~-G~i~~~g~~~ 243 (290)
T 2bbs_A 186 PFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME--HLKKADKILILHE-GSSYFYGTFS 243 (290)
T ss_dssp TTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH--HHHHSSEEEEEET-TEEEEEECHH
T ss_pred CcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH--HHHcCCEEEEEEC-CeEEEeCCHH
Confidence 99999999999999974 4543 5899999999975 3456999999985 7888888754
No 99
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.8e-34 Score=317.09 Aligned_cols=194 Identities=22% Similarity=0.316 Sum_probs=147.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+|+|+.|++|++++|+|||||||||||++|+|.++|. +|+|.++| .++||+|++.+++. ||+|
T Consensus 52 ~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~~g----------~i~~v~Q~~~l~~~-tv~e 117 (290)
T 2bbs_A 52 PVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS---EGKIKHSG----------RISFCSQNSWIMPG-TIKE 117 (290)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEE---EEEEECCS----------CEEEECSSCCCCSS-BHHH
T ss_pred eEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCC---CcEEEECC----------EEEEEeCCCccCcc-cHHH
Confidence 5999999999999999999999999999999999998765 99999998 48999999987774 9999
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|+. +... .. ....+. ++.. .++..++. ++...++.++. .+..||
T Consensus 118 nl~-~~~~----~~-~~~~~~------------------~~~~---------~l~~~l~~--~~~~~~~~~~~-~~~~LS 161 (290)
T 2bbs_A 118 NII-GVSY----DE-YRYRSV------------------IKAC---------QLEEDISK--FAEKDNIVLGE-GGITLS 161 (290)
T ss_dssp HHH-TTCC----CH-HHHHHH------------------HHHT---------TCHHHHHT--STTGGGCBC-----CCCC
T ss_pred Hhh-Cccc----ch-HHHHHH------------------HHHh---------ChHHHHHh--ccccccchhcC-ccCcCC
Confidence 997 3210 00 000000 0000 01112222 22233455553 356899
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHH-HHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEE
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYL-KHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIV 387 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l-~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv 387 (1085)
|||||||+|||||+.+|++|+|||||+|||+.++..+++.+ +++. . +++|+.++|+...+ ..||++++|++|+++
T Consensus 162 gGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~-~~tviivtHd~~~~-~~~d~i~~l~~G~i~ 237 (290)
T 2bbs_A 162 GGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--A-NKTRILVTSKMEHL-KKADKILILHEGSSY 237 (290)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--T-TSEEEEECCCHHHH-HHSSEEEEEETTEEE
T ss_pred HHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--C-CCEEEEEecCHHHH-HcCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999864 4432 2 34566677887776 469999999999999
Q ss_pred EecChhhHH
Q 001400 388 YQGPRVSVL 396 (1085)
Q Consensus 388 ~~G~~~~~~ 396 (1085)
+.|+++++.
T Consensus 238 ~~g~~~~l~ 246 (290)
T 2bbs_A 238 FYGTFSELQ 246 (290)
T ss_dssp EEECHHHHH
T ss_pred EeCCHHHHh
Confidence 999998874
No 100
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.1e-32 Score=362.78 Aligned_cols=211 Identities=22% Similarity=0.370 Sum_probs=168.2
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~~~~~ 223 (1085)
+.++|+|+|++|+|||+++|+||||||||||+++|+|+++|. +|+|.++|+++..... ++.++||+|++.++ +
T Consensus 1045 ~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~---~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~ 1120 (1284)
T 3g5u_A 1045 SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPM---AGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-D 1120 (1284)
T ss_dssp GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCS---EEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-S
T ss_pred CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCC---CCEEEECCEEcccCCHHHHHhceEEECCCCccc-c
Confidence 346999999999999999999999999999999999999886 9999999999876542 56799999999765 5
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|||.++..... ...+.+.+.++. .+ ++.. .-.+++..||.||+.
T Consensus 1121 ~ti~eNi~~~~~~~~--~~~~~i~~~~~~---~~------------------------~~~~--i~~l~~gldt~vge~- 1168 (1284)
T 3g5u_A 1121 CSIAENIAYGDNSRV--VSYEEIVRAAKE---AN------------------------IHQF--IDSLPDKYNTRVGDK- 1168 (1284)
T ss_dssp SBHHHHHTCCCSSCC--CCHHHHHHHHHH---HT------------------------CHHH--HSSTTTGGGCBCSTT-
T ss_pred ccHHHHHhccCCCCC--CCHHHHHHHHHH---hC------------------------cHHH--HHhCccccccccCCC-
Confidence 799999987532111 011111111100 00 1111 224677889999964
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
+.+|||||||||+|||||+.+|+||+|||||+|||+.+...|.+.|++.. ++.+++.++|..+.+ ..||+|++|++
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~---~~~tvi~isH~l~~i-~~~dri~vl~~ 1244 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR---EGRTCIVIAHRLSTI-QNADLIVVIQN 1244 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS---SSSCEEEECSCTTGG-GSCSEEEEEET
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC---CCCEEEEEecCHHHH-HcCCEEEEEEC
Confidence 55799999999999999999999999999999999999999999998753 244555688888877 55999999999
Q ss_pred CeEEEecChhhHHH
Q 001400 384 GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 G~iv~~G~~~~~~~ 397 (1085)
|+++++|+++++++
T Consensus 1245 G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1245 GKVKEHGTHQQLLA 1258 (1284)
T ss_dssp BEEEEEECHHHHHH
T ss_pred CEEEEECCHHHHHh
Confidence 99999999999874
No 101
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.97 E-value=1.3e-30 Score=316.55 Aligned_cols=191 Identities=24% Similarity=0.282 Sum_probs=160.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.+++||+++|+|||||||||||++|+|.++|. +|+|.+ .+.++|++|+....+.+||.|+
T Consensus 371 ~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~ 437 (607)
T 3bk7_A 371 KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKVEW----------DLTVAYKPQYIKAEYEGTVYEL 437 (607)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BSCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCC---ceEEEE----------eeEEEEEecCccCCCCCcHHHH
Confidence 467777889999999999999999999999999999876 899875 2469999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+.+..... + . ...+++++++.+||.+.++..+ ..|||
T Consensus 438 ~~~~~~~~-----~--------~-------------------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 474 (607)
T 3bk7_A 438 LSKIDSSK-----L--------N-------------------------SNFYKTELLKPLGIIDLYDRNV-----EDLSG 474 (607)
T ss_dssp HHHHHHHH-----H--------H-------------------------CHHHHHHTHHHHTCTTTTTSBG-----GGCCH
T ss_pred HHhhhccC-----C--------C-------------------------HHHHHHHHHHHcCCchHhcCCh-----hhCCH
Confidence 86521000 0 0 0123677899999988777665 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+||+||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+|+.++|+..++..++|+|++|++ |+++
T Consensus 475 Ge~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g-~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~ 553 (607)
T 3bk7_A 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLIVFEGEPGRHG 553 (607)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEcCCcceEE
Confidence 999999999999999999999999999999999999999999875434 4566688999999999999999986 8889
Q ss_pred EecChhhHHH
Q 001400 388 YQGPRVSVLD 397 (1085)
Q Consensus 388 ~~G~~~~~~~ 397 (1085)
..|+++++..
T Consensus 554 ~~g~p~~~~~ 563 (607)
T 3bk7_A 554 RALPPMGMRE 563 (607)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 102
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.97 E-value=1.6e-30 Score=312.83 Aligned_cols=191 Identities=24% Similarity=0.273 Sum_probs=158.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.|++||+++|+|||||||||||++|+|.++|. +|+|.+ ...++|++|+....+.+||.|+
T Consensus 301 ~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~---~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~ 367 (538)
T 1yqt_A 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPT---EGKIEW----------DLTVAYKPQYIKADYEGTVYEL 367 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCS---BCCCCC----------CCCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CeEEEE----------CceEEEEecCCcCCCCCcHHHH
Confidence 466777778999999999999999999999999998876 899875 2369999999877788999998
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+....... + . ....++.+++.+||.+..+..+ ..|||
T Consensus 368 ~~~~~~~~-----~----------------~-----------------~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 404 (538)
T 1yqt_A 368 LSKIDASK-----L----------------N-----------------SNFYKTELLKPLGIIDLYDREV-----NELSG 404 (538)
T ss_dssp HHHHHHHH-----H----------------T-----------------CHHHHHHTTTTTTCGGGTTSBG-----GGCCH
T ss_pred HHhhhccC-----C----------------C-----------------HHHHHHHHHHHcCChhhhcCCh-----hhCCH
Confidence 75421000 0 0 0123677888999987776655 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+||++|+.+|++|+|||||+|||..++..|.+.|+++++..+ .+|+.++|+.+++..+||+|++|++ |+++
T Consensus 405 Ge~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g-~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~ 483 (538)
T 1yqt_A 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNE-KTALVVEHDVLMIDYVSDRLMVFEGEPGKYG 483 (538)
T ss_dssp HHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeCCcceEe
Confidence 999999999999999999999999999999999999999999875434 4566688999999999999999986 8899
Q ss_pred EecChhhHHH
Q 001400 388 YQGPRVSVLD 397 (1085)
Q Consensus 388 ~~G~~~~~~~ 397 (1085)
..|+++++..
T Consensus 484 ~~g~~~~~~~ 493 (538)
T 1yqt_A 484 RALPPMGMRE 493 (538)
T ss_dssp EECCCEEHHH
T ss_pred ecCCHHHHHh
Confidence 9999988765
No 103
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.9e-30 Score=309.64 Aligned_cols=192 Identities=22% Similarity=0.256 Sum_probs=158.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
.|+++|+.|++||+++|+|||||||||||++|+|.++|+ +|+|.++| +.++|++|+......+||+||
T Consensus 283 ~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~---~G~i~~~~---------~~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 283 QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD---EGSVTPEK---------QILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCS---BCCEESSC---------CCEEEECSSCCCCCSSBHHHH
T ss_pred EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CcEEEECC---------eeeEeechhcccccCCCHHHH
Confidence 456667789999999999999999999999999999886 99998775 358999999776678999999
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+.+..... . . .....++++++.+||.+..+..+ ..|||
T Consensus 351 l~~~~~~~--~------------------~-----------------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSG 388 (538)
T 3ozx_A 351 LENASKDA--L------------------S-----------------TSSWFFEEVTKRLNLHRLLESNV-----NDLSG 388 (538)
T ss_dssp HHHHCSST--T------------------C-----------------TTSHHHHHTTTTTTGGGCTTSBG-----GGCCH
T ss_pred HHHhhhhc--c------------------c-----------------hhHHHHHHHHHHcCCHHHhcCCh-----hhCCH
Confidence 97632100 0 0 00123667788899988777655 46999
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC--CeEE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE--GQIV 387 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~--G~iv 387 (1085)
||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++.. +++|+.++|+.+++..+||+|++|++ |...
T Consensus 389 Gq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~ 467 (538)
T 3ozx_A 389 GELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-KAVTFIIDHDLSIHDYIADRIIVFKGEPEKAG 467 (538)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHCSEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHhCCEEEEEeCCcceec
Confidence 99999999999999999999999999999999999999999997654 45566689999999999999999986 6677
Q ss_pred EecChhhHH
Q 001400 388 YQGPRVSVL 396 (1085)
Q Consensus 388 ~~G~~~~~~ 396 (1085)
..+++.++.
T Consensus 468 ~~~~~~~~~ 476 (538)
T 3ozx_A 468 LATSPVTLK 476 (538)
T ss_dssp EECCCEEHH
T ss_pred cCCChHHHH
Confidence 777766554
No 104
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.96 E-value=6.5e-32 Score=326.20 Aligned_cols=154 Identities=18% Similarity=0.178 Sum_probs=113.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW 928 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~ 928 (1085)
++.+++|++++|+|+||||||||++.++|.... .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~---~G~--------------~vi~~~~ee~~----~~l~~~~~---- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA---NKE--------------RAILFAYEESR----AQLLRNAY---- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT---TTC--------------CEEEEESSSCH----HHHHHHHH----
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh---CCC--------------CEEEEEEeCCH----HHHHHHHH----
Confidence 448999999999999999999999999985431 132 12455666531 12223221
Q ss_pred hcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH-----H
Q 001400 929 LRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR-----A 1003 (1085)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~-----~ 1003 (1085)
+.. .. +++ +...++..+.+.. +..||+||+||+++|+++..+|++|++| ||++||.. .
T Consensus 330 -~~g--~~-------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~ 392 (525)
T 1tf7_A 330 -SWG--MD-------FEE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAF 392 (525)
T ss_dssp -TTS--CC-------HHH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHH
T ss_pred -HcC--CC-------HHH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHH
Confidence 111 11 112 2234554444432 2479999999999999999999999999 99999999 9
Q ss_pred HHHHHHHHHHHHHCCceEEEEecCc----------cHHHHHhcCEEEEEecC
Q 001400 1004 AAIVMRTVRNIVNTGRTIVCTIHQP----------SIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~g~tvi~~~H~~----------~~~~~~~~d~il~l~~g 1045 (1085)
+..+.++++.+++.|.|||+|+|+. . .+...+|++++|.+|
T Consensus 393 ~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~-~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 393 RQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDS-HISTITDTIILLQYV 443 (525)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSS-CCTTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEEECcccccCcccccCc-ccceeeeEEEEEEEE
Confidence 9999999999988899999999997 3 355678999999864
No 105
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.2e-29 Score=307.42 Aligned_cols=192 Identities=23% Similarity=0.197 Sum_probs=159.3
Q ss_pred eecccceeeEeCC-----eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 149 TILDDLSGIIRPS-----RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 149 ~iL~~vs~~i~~G-----~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
.+++|+|+.+++| |+++|+|||||||||||++|+|.++|+ +|+. + ....++|++|+......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~---~G~~------~----~~~~i~~~~q~~~~~~~ 427 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD---EGQD------I----PKLNVSMKPQKIAPKFP 427 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS---BCCC------C----CSCCEEEECSSCCCCCC
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCC---CCcC------c----cCCcEEEecccccccCC
Confidence 5789999999999 779999999999999999999999886 7752 1 23468999999766667
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
.||+|++.... .+.. .....++.+++.+||.+.++..+
T Consensus 428 ~tv~e~~~~~~--~~~~------------------------------------~~~~~~~~~l~~l~l~~~~~~~~---- 465 (608)
T 3j16_B 428 GTVRQLFFKKI--RGQF------------------------------------LNPQFQTDVVKPLRIDDIIDQEV---- 465 (608)
T ss_dssp SBHHHHHHHHC--SSTT------------------------------------TSHHHHHHTHHHHTSTTTSSSBS----
T ss_pred ccHHHHHHHHh--hccc------------------------------------ccHHHHHHHHHHcCChhhhcCCh----
Confidence 89999875321 1000 00123567889999988777665
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
..|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++..+ .+|+.++|+.+++..++|+|++|++
T Consensus 466 -~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g-~tviivtHdl~~~~~~aDrvivl~~ 543 (608)
T 3j16_B 466 -QHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNK-KTAFIVEHDFIMATYLADKVIVFEG 543 (608)
T ss_dssp -SSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHT-CEEEEECSCHHHHHHHCSEEEECEE
T ss_pred -hhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCC-CEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 46999999999999999999999999999999999999999999999865444 4566689999999999999999986
Q ss_pred --CeEEEecChhhHHH
Q 001400 384 --GQIVYQGPRVSVLD 397 (1085)
Q Consensus 384 --G~iv~~G~~~~~~~ 397 (1085)
|+++..|++++++.
T Consensus 544 ~~g~~~~~g~p~~~~~ 559 (608)
T 3j16_B 544 IPSKNAHARAPESLLT 559 (608)
T ss_dssp ETTTEEECCCCEEHHH
T ss_pred CCCeEEecCChHHHhh
Confidence 99999999998875
No 106
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.96 E-value=3.7e-29 Score=312.79 Aligned_cols=183 Identities=21% Similarity=0.290 Sum_probs=149.3
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCC-CCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQND-IHSPGL 917 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~-~~~~~~ 917 (1085)
++++.+|+|+||+|++|+++||+||||||||||+++|+| |.| +|.+... ...++|++|+. ..++.+
T Consensus 445 yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag--------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~l 511 (986)
T 2iw3_A 445 YGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN--------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDT 511 (986)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH--------TCS--TTCCCTT---TSCEEETTCCCCCCCTTS
T ss_pred ECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC--------CCc--CCCcccc---ceeEEEEcccccccccCC
Confidence 356789999999999999999999999999999999995 222 4443221 12368999874 567889
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-cccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPT 996 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPt 996 (1085)
||.|++.+ ... .. .+.++++++.+++. +..+..+ .+||||||||++|||||+.+|+||||||||
T Consensus 512 tv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~-----~~LSGGqkQRvaLArAL~~~P~lLLLDEPT 576 (986)
T 2iw3_A 512 SVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPI-----SALSGGWKMKLALARAVLRNADILLLDEPT 576 (986)
T ss_dssp BHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBG-----GGCCHHHHHHHHHHHHHHTTCSEEEEESTT
T ss_pred cHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence 99999975 111 11 34578899999994 4555544 479999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEE-EecCC
Q 001400 997 SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELI-YAGPL 1054 (1085)
Q Consensus 997 sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~-~~g~~ 1054 (1085)
+|||+.++..+++.|++ .|.|||++|||++ .+...||++++|++ |+++ +.|+.
T Consensus 577 s~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~-G~iv~~~G~~ 630 (986)
T 2iw3_A 577 NHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEG-LKLRKYKGNF 630 (986)
T ss_dssp TTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEET-TEEEEEESCH
T ss_pred cCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEEC-CeeecCCCCH
Confidence 99999999999999998 5899999999986 47788999999985 6765 67765
No 107
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.96 E-value=2.3e-29 Score=312.71 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=132.5
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHH---------------------hhhhCCCCCC--ee---eeEEEEcCccC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLM---------------------DVLAGRKTGG--II---EGDIYISGYPK 895 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl---------------------~~l~g~~~~~--~~---~G~i~i~g~~~ 895 (1085)
..+|+||||+|++||++||+||||||||||+ +++.|...++ .+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4579999999999999999999999999997 5666643321 11 45677777654
Q ss_pred ChhcccceEEEEccCCC-------------------CCCCCCHHHHHHHhhhhcCCCcccHHHHH------HHHHHHHHH
Q 001400 896 RQETFARISGYCEQNDI-------------------HSPGLTVLESLLFSAWLRLPSEIELETQR------AFVEEVMEL 950 (1085)
Q Consensus 896 ~~~~~~~~~gy~~Q~~~-------------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~------~~~~~~l~~ 950 (1085)
... .++.+||++|... .++.+||+||+.+...+..... ...... ....++++.
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hcc-chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 321 1233444444322 2357899999987432211110 000000 011235777
Q ss_pred cCCCcc-cccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecC
Q 001400 951 VELTSL-SGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 951 ~~l~~~-~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1027 (1085)
+++.+. .+... .+|||||||||+|||||+.+|+ ||||||||+|||+.++..+++.|+++.++|.|||+||||
T Consensus 189 ~gL~~~~~~~~~-----~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSA-----GTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBG-----GGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCc-----ccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 888654 34433 4799999999999999999998 999999999999999999999999998889999999999
Q ss_pred ccHHHHHhcCEEEEEe-----cCcEEEEecCCCC
Q 001400 1028 PSIDIFESFDELLFMK-----RGGELIYAGPLGS 1056 (1085)
Q Consensus 1028 ~~~~~~~~~d~il~l~-----~gG~~~~~g~~~~ 1056 (1085)
++ ....||++++|. ++|++++.|+..+
T Consensus 264 ~~--~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~ 295 (670)
T 3ux8_A 264 ED--TMLAADYLIDIGPGAGIHGGEVVAAGTPEE 295 (670)
T ss_dssp HH--HHHHCSEEEEECSSSGGGCCSEEEEECHHH
T ss_pred HH--HHhhCCEEEEecccccccCCEEEEecCHHH
Confidence 75 456799999993 3578999997643
No 108
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=7.2e-25 Score=274.36 Aligned_cols=109 Identities=21% Similarity=0.278 Sum_probs=91.9
Q ss_pred HHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001400 281 VVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1085)
Q Consensus 281 ~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1085)
++.++|+.+||... .+| +...+|||||||||+|||+|+.+| ++|+|||||+|||+.+...+++.|++++.. +
T Consensus 784 ~~~~~L~~vGL~~~---~lg-q~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~-G 858 (916)
T 3pih_A 784 RTLQVLHDVGLGYV---KLG-QPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR-G 858 (916)
T ss_dssp HHHHHHHHTTGGGS---BTT-CCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHcCCchh---hcc-CCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-C
Confidence 46788999999652 122 345679999999999999999865 799999999999999999999999998753 4
Q ss_pred CEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
. +||.+.|+.+.+ ..+|+|++| ++|+|++.|+++++.
T Consensus 859 ~-TVIvI~HdL~~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 859 N-TVIVIEHNLDVI-KNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp C-EEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred C-EEEEEeCCHHHH-HhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 4 556688888776 459999999 899999999999986
No 109
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.92 E-value=2.7e-25 Score=275.41 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=91.8
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCchhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001400 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1085)
Q Consensus 282 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1085)
+.++|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|+|||||+|||+.+...+++.|++++..
T Consensus 825 ~~~~L~~~gL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 897 (972)
T 2r6f_A 825 KLETLYDVGLGYMKLGQP-----ATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN-- 897 (972)
T ss_dssp HHHHHHHTTCSSSBTTCC-----GGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCc-----hhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 44544 4579999999999999999764 999999999999999999999999998753
Q ss_pred CEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++.
T Consensus 898 G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 898 GDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 45566688888876 689999999 789999999998875
No 110
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=6.5e-25 Score=272.64 Aligned_cols=108 Identities=23% Similarity=0.290 Sum_probs=93.8
Q ss_pred HHHHHHHHhCCccc-ccccccCcccccCchhhhhHHHHHHHHhCC---CcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001400 281 VVEYIMKILGLDTC-ADTLVGDEMLKGISGGQKKRLTTGELLVGP---ARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1085)
Q Consensus 281 ~~~~~l~~lgL~~~-~dt~vg~~~~~~LSGGqkqRvsia~al~~~---p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1085)
+++++|+.+||... .+. .+..|||||||||+||++|+.+ |++|+|||||+|||..+...|.+.|++++..
T Consensus 709 ~~~~~L~~~gL~~~~l~~-----~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~- 782 (842)
T 2vf7_A 709 RALDTLREVGLGYLRLGQ-----PATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA- 782 (842)
T ss_dssp HHHHHHHHTTCTTSBTTC-----CGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHcCCCcccccC-----CcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC-
Confidence 47889999999763 343 3457999999999999999996 7999999999999999999999999998753
Q ss_pred CCEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHH
Q 001400 357 DGTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVL 396 (1085)
Q Consensus 357 ~~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~ 396 (1085)
+.+|+.++|+.+++ ..||+|++| ++|++++.|+++++.
T Consensus 783 -G~tVIvisHdl~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 783 -GNTVIAVEHKMQVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp -TCEEEEECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred -CCEEEEEcCCHHHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 45566688999888 889999999 799999999998874
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.92 E-value=9.2e-25 Score=271.79 Aligned_cols=108 Identities=22% Similarity=0.252 Sum_probs=92.2
Q ss_pred HHHHHHHhCCcc-cccccccCcccccCchhhhhHHHHHHHHhCCC---cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccC
Q 001400 282 VEYIMKILGLDT-CADTLVGDEMLKGISGGQKKRLTTGELLVGPA---RVLFMDEISNGLDSSTTYQIIKYLKHSTRALD 357 (1085)
Q Consensus 282 ~~~~l~~lgL~~-~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p---~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~ 357 (1085)
+.++|+.+||.. ..+.. +..|||||||||+||++|+.+| ++|+|||||+|||..+...|++.|++++..
T Consensus 843 ~~~~L~~lgL~~~~l~~~-----~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~-- 915 (993)
T 2ygr_A 843 YLRTLVDVGLGYVRLGQP-----APTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK-- 915 (993)
T ss_dssp HHHHHHHTTGGGSBTTCC-----GGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHcCCCcccccCc-----cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--
Confidence 567899999976 44443 4579999999999999999865 999999999999999999999999998753
Q ss_pred CEEEEEEecChhHHHhhcCeEEEe------cCCeEEEecChhhHHH
Q 001400 358 GTTVISLLQPAPEAYELFDDVILL------SEGQIVYQGPRVSVLD 397 (1085)
Q Consensus 358 ~t~ii~~~q~~~~~~~~~D~ii~L------~~G~iv~~G~~~~~~~ 397 (1085)
+.+|+.++|+.+++ ..+|+|++| ++|++++.|+++++..
T Consensus 916 G~TVIvisHdl~~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 916 GNTVIVIEHNLDVI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp TCEEEEECCCHHHH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCEEEEEcCCHHHH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 45566688888876 689999999 7899999999988754
No 112
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.91 E-value=9.5e-25 Score=256.59 Aligned_cols=204 Identities=18% Similarity=0.162 Sum_probs=139.1
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCC------------------------------------Ceee
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTG------------------------------------GIIE 885 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~------------------------------------~~~~ 885 (1085)
..+++++|+++.+| +++|+|+|||||||||++|.+...+ ....
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 34688999999999 9999999999999999999653221 0125
Q ss_pred eEEEEcCccCChh---cc-cceEEEEccCCCCCCCCCHHHHHHHhhhhc-----------------------CCCcc---
Q 001400 886 GDIYISGYPKRQE---TF-ARISGYCEQNDIHSPGLTVLESLLFSAWLR-----------------------LPSEI--- 935 (1085)
Q Consensus 886 G~i~i~g~~~~~~---~~-~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~-----------------------~~~~~--- 935 (1085)
|.+.+||.+.+.. .+ ...+++++|++.++.. +..+...|.-+.. .....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~ 205 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSK 205 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 7899999987642 22 3348999998776543 4444333211100 00000
Q ss_pred -------------------------------cHHHHHHHHHHHHHHcCCCccc----------------cc---ccCCC-
Q 001400 936 -------------------------------ELETQRAFVEEVMELVELTSLS----------------GA---LIGLP- 964 (1085)
Q Consensus 936 -------------------------------~~~~~~~~~~~~l~~~~l~~~~----------------~~---~~~~~- 964 (1085)
........+.+.++.+++.... +. .....
T Consensus 206 ~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 285 (415)
T 4aby_A 206 HPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANP 285 (415)
T ss_dssp ----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSS
T ss_pred cCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCC
Confidence 0000112334445555443210 00 01000
Q ss_pred -----CCCC-CCHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhc
Q 001400 965 -----GING-LSTEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESF 1036 (1085)
Q Consensus 965 -----~~~~-LS~Gqrqrl~iA~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~ 1036 (1085)
.... ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++. +|+|||+|||+++ +...|
T Consensus 286 ~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~ 362 (415)
T 4aby_A 286 GEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARA 362 (415)
T ss_dssp SCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTC
T ss_pred CCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhc
Confidence 0111 7999999999999999999 9999999999999999999999999987 6999999999974 56789
Q ss_pred CEEEEE----ecCcEEEEe
Q 001400 1037 DELLFM----KRGGELIYA 1051 (1085)
Q Consensus 1037 d~il~l----~~gG~~~~~ 1051 (1085)
|++++| .+ |+++..
T Consensus 363 d~i~~l~k~~~~-G~~~~~ 380 (415)
T 4aby_A 363 HHHYKVEKQVED-GRTVSH 380 (415)
T ss_dssp SEEEEEEEEEET-TEEEEE
T ss_pred CeEEEEEEeccC-CceEEE
Confidence 999999 75 566544
No 113
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=8.8e-27 Score=273.93 Aligned_cols=184 Identities=13% Similarity=0.060 Sum_probs=141.1
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-E-EEECCccCCCCCCCceEEEEccCCC---CCCCCCHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-K-ITYNGHGFKEFVPPRTSAYVSQQDW---QVAEMTVR 227 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~-i~~~G~~~~~~~~~~~~~yv~Q~d~---~~~~lTV~ 227 (1085)
++|+.+++|++++|+||||||||||+|+|+|.+.+. +| + |.++|. +++.++|++|+.. +...+||+
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~---~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKF---NAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHH---HCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccccc---CCceeEEEcCC------ccCCeeeeccchhhcccccccchh
Confidence 799999999999999999999999999999998664 89 8 999982 3567899999874 45568999
Q ss_pred HHHHHhhhh-cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 ETLDFAGQC-QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E~l~f~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
||+ |+... .+... ..++..+++.+||++..+ ...
T Consensus 201 eni-~~~~~~~~~~~-------------------------------------~~~~~~ll~~~gl~~~~~-------~~~ 235 (460)
T 2npi_A 201 LPT-WGQSLTSGATL-------------------------------------LHNKQPMVKNFGLERINE-------NKD 235 (460)
T ss_dssp CTT-CSCBCBSSCCS-------------------------------------SCCBCCEECCCCSSSGGG-------CHH
T ss_pred hhh-cccccccCcch-------------------------------------HHHHHHHHHHhCCCcccc-------hhh
Confidence 998 75432 11000 001223455678876554 347
Q ss_pred CchhhhhHHHHHHH--HhCCCcE----eEEeC-CCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh-----HHHhh
Q 001400 307 ISGGQKKRLTTGEL--LVGPARV----LFMDE-ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP-----EAYEL 374 (1085)
Q Consensus 307 LSGGqkqRvsia~a--l~~~p~v----lllDE-ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~-----~~~~~ 374 (1085)
|||||||||+||++ |+.+|++ |+||| ||++||.. ...|.+.+++ .+.++|+++|++.+ ++..+
T Consensus 236 LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~----~~~tviiVth~~~~~l~~~~~~~~ 310 (460)
T 2npi_A 236 LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEK----LNVNIMLVLCSETDPLWEKVKKTF 310 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHH----TTCCEEEEECCSSCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHH----hCCCEEEEEccCchhhhHHHHHHh
Confidence 99999999999999 9999999 99999 99999999 5555555543 34565554444331 66789
Q ss_pred cCe-----EEEec-CCeEEEecChhhHH
Q 001400 375 FDD-----VILLS-EGQIVYQGPRVSVL 396 (1085)
Q Consensus 375 ~D~-----ii~L~-~G~iv~~G~~~~~~ 396 (1085)
+|+ |++|+ +|+++ .|+++++.
T Consensus 311 ~dr~~~~~vi~l~k~G~iv-~g~~~~~~ 337 (460)
T 2npi_A 311 GPELGNNNIFFIPKLDGVS-AVDDVYKR 337 (460)
T ss_dssp HHHHCGGGEEEECCCTTCC-CCCHHHHH
T ss_pred cccccCCEEEEEeCCCcEE-ECCHHHHh
Confidence 999 99999 99999 99887653
No 114
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.5e-27 Score=278.50 Aligned_cols=196 Identities=17% Similarity=0.090 Sum_probs=147.2
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-E-EEEcCccCChhcccceEEEEccCCC---CCCCCCHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-D-IYISGYPKRQETFARISGYCEQNDI---HSPGLTVLE 921 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~-i~i~g~~~~~~~~~~~~gy~~Q~~~---~~~~~tv~e 921 (1085)
++|+++++|++++|+||||||||||+++|+|... +.+| + |.++|. .++.++|++|+.. +.+.+|++|
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~--p~~G~~pI~vdg~------~~~~i~~vpq~~~l~~~~~~~tv~e 201 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL--KFNAYQPLYINLD------PQQPIFTVPGCISATPISDILDAQL 201 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH--HHHCCCCEEEECC------TTSCSSSCSSCCEEEECCSCCCTTC
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc--ccCCceeEEEcCC------ccCCeeeeccchhhcccccccchhh
Confidence 7999999999999999999999999999999865 4679 8 999983 2567899999874 445679999
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH--HhcCCCE----EEEeC-
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE--LVANPSI----VFMDE- 994 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a--L~~~p~i----lllDE- 994 (1085)
|+ |+........ ..+.+.++++.+++.+..+ +.+|||||||||+|||| |+.+|++ |||||
T Consensus 202 ni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~~~-------~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEp 268 (460)
T 2npi_A 202 PT-WGQSLTSGAT-----LLHNKQPMVKNFGLERINE-------NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTP 268 (460)
T ss_dssp TT-CSCBCBSSCC-----SSCCBCCEECCCCSSSGGG-------CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECC
T ss_pred hh-cccccccCcc-----hHHHHHHHHHHhCCCcccc-------hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCC
Confidence 98 6543211100 0112345566666665543 24799999999999999 9999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc--H---HHHHhcCE-----EEEEecCcEEEEecCCCCc----hHH
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS--I---DIFESFDE-----LLFMKRGGELIYAGPLGSK----SCE 1060 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~--~---~~~~~~d~-----il~l~~gG~~~~~g~~~~~----~~~ 1060 (1085)
||++||+. ...+.+.+++ .+.|+|+++|+.+ . .....+|+ +++|++.|+++ .|+.... ...
T Consensus 269 Pts~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~~~~~~~~ 343 (460)
T 2npi_A 269 SISQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYKRSLQRTS 343 (460)
T ss_dssp CGGGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHHHHHHHHH
T ss_pred cccccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHHhhhhHHH
Confidence 99999999 6666666555 3889999999976 3 24467899 99998345666 7765432 234
Q ss_pred HHHHHHhc
Q 001400 1061 LIKYFEVE 1068 (1085)
Q Consensus 1061 ~~~~~~~~ 1068 (1085)
+.+||...
T Consensus 344 i~~~f~g~ 351 (460)
T 2npi_A 344 IREYFYGS 351 (460)
T ss_dssp HHHHHHCC
T ss_pred HHHHhCCC
Confidence 66787543
No 115
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.89 E-value=2.5e-23 Score=244.48 Aligned_cols=236 Identities=13% Similarity=0.101 Sum_probs=148.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC-----------------------------------Ccee
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH-----------------------------------LQVS 192 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~-----------------------------------~~~~ 192 (1085)
..+++++++.+.+| +++|+|||||||||||++|++.+... ..-+
T Consensus 48 f~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~ 126 (415)
T 4aby_A 48 LATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGR 126 (415)
T ss_dssp ETTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSC
T ss_pred ccceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCc
Confidence 45899999999999 99999999999999999998887531 0126
Q ss_pred eEEEECCccCCCCC----CCceEEEEccCCCCCCCCCHHHHHHHhhhhcCC-CCc----hhhhHHHHHHHHHhCCCCC--
Q 001400 193 GKITYNGHGFKEFV----PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV-GSK----YDMITELARREKIAGIKPD-- 261 (1085)
Q Consensus 193 G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~-~~~----~~~~~~~~~~e~~~~~~~~-- 261 (1085)
|++.+||.+++... ....+++++|++.++. .+..+...|.-..... ... +....+.. .+...-....
T Consensus 127 ~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l-~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~-~~~~~l~~~~~~ 204 (415)
T 4aby_A 127 GAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSL-LSPANQRGLLDRRVTKEAQAYAAAHAAWREAV-SRLERLQASESS 204 (415)
T ss_dssp EEEEETTEEECHHHHHHHHTTTEEEETTTCTTTT-SSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-HHHHHC------
T ss_pred eEEEECCEECCHHHHHHHHhhceEEecCcccccc-cCHHHHHHHHHHHhccChHHHHHHHHHHHHHH-HHHHHHHhhhhh
Confidence 88999998875321 1234899999976544 3666555543221100 000 00000000 0000000000
Q ss_pred ---------chHHHHHHHhh-----------hcCcchhHHHHHHHHHhCCcccc----------------cc---cccC-
Q 001400 262 ---------EDLDIFMKSFA-----------LGGQKTSLVVEYIMKILGLDTCA----------------DT---LVGD- 301 (1085)
Q Consensus 262 ---------~d~~~~~~~~~-----------~~~~~~~~~~~~~l~~lgL~~~~----------------dt---~vg~- 301 (1085)
..++.+.+... ......+..++..++.++++... +. .++.
T Consensus 205 ~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 284 (415)
T 4aby_A 205 KHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSAN 284 (415)
T ss_dssp -----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESS
T ss_pred hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcC
Confidence 00000000000 00111234466777788775410 00 1111
Q ss_pred -----ccccc-CchhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHh
Q 001400 302 -----EMLKG-ISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYE 373 (1085)
Q Consensus 302 -----~~~~~-LSGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~ 373 (1085)
..++. |||||||||+||++|+.+| ++|+|||||+|||+.+...+.+.|+++++ +.+ |+.++|.. ++.+
T Consensus 285 ~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~--~~~-vi~itH~~-~~~~ 360 (415)
T 4aby_A 285 PGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQ-VLVVTHLA-QIAA 360 (415)
T ss_dssp SSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSCH-HHHT
T ss_pred CCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC--CCE-EEEEeCcH-HHHh
Confidence 11222 6999999999999999999 99999999999999999999999999862 444 45567775 5678
Q ss_pred hcCeEEEe----cCCeEEEec
Q 001400 374 LFDDVILL----SEGQIVYQG 390 (1085)
Q Consensus 374 ~~D~ii~L----~~G~iv~~G 390 (1085)
.+|++++| .+|+++...
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEEE
T ss_pred hcCeEEEEEEeccCCceEEEE
Confidence 99999999 999987654
No 116
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.88 E-value=4.3e-26 Score=240.62 Aligned_cols=144 Identities=15% Similarity=0.141 Sum_probs=97.9
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
+++.+|+|| ++||+++|+||||||||||+++|+|. . +.+|+|............++.+||++|++
T Consensus 11 g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~--p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 11 GQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A--LQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H--HHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred hHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C--CcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 345677785 89999999999999999999999998 5 34566532101111123456799999976
Q ss_pred HHHH-HHhh----hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 920 LESL-LFSA----WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 920 ~e~l-~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
+||+ .+.. .+.... . .+.++++++. + | |||||++|||||+.+|+||||||
T Consensus 76 ~enl~~~~~~~~~~~~~~~--~----~~~~~~~l~~-g----------------l--Gq~qrv~lAraL~~~p~lllLDE 130 (208)
T 3b85_A 76 NEKIDPYLRPLHDALRDMV--E----PEVIPKLMEA-G----------------I--VEVAPLAYMRGRTLNDAFVILDE 130 (208)
T ss_dssp ----CTTTHHHHHHHTTTS--C----TTHHHHHHHT-T----------------S--EEEEEGGGGTTCCBCSEEEEECS
T ss_pred HHHHHHHHHHHHHHHHHhc--c----HHHHHHHHHh-C----------------C--chHHHHHHHHHHhcCCCEEEEeC
Confidence 4454 2211 011000 0 1123444432 1 2 99999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 995 PTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
||+| ++..+++.|+++ ++|.||| +|||++
T Consensus 131 Pts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 131 AQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp GGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred Cccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999 888899999988 6689999 999975
No 117
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.87 E-value=5.2e-22 Score=228.04 Aligned_cols=82 Identities=23% Similarity=0.386 Sum_probs=74.1
Q ss_pred CCCCCHHHHHHHHHHHHHh------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRKRLTIAVELV------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA~aL~------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.+||||||||++||+||+ .+|++|||||||+|||+.+...+++.|+++.+.|.|||+|||+++ ..+.+|++
T Consensus 277 ~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~--~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE--FSEAFDRK 354 (365)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH--HHTTCSCE
T ss_pred chhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH--HHHhCCEE
Confidence 3579999999999999999 799999999999999999999999999999878999999999975 46789999
Q ss_pred EEEecCcEEEE
Q 001400 1040 LFMKRGGELIY 1050 (1085)
Q Consensus 1040 l~l~~gG~~~~ 1050 (1085)
++|++ |+++.
T Consensus 355 ~~l~~-G~i~~ 364 (365)
T 3qf7_A 355 LRITG-GVVVN 364 (365)
T ss_dssp EEEET-TEEC-
T ss_pred EEEEC-CEEEe
Confidence 99985 67653
No 118
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.87 E-value=2e-23 Score=214.14 Aligned_cols=150 Identities=16% Similarity=0.189 Sum_probs=102.9
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCC-CCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP-GLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~-~~tv~e~l~~ 925 (1085)
||||++++||+++|+||||||||||++++.+... .+++ .. ..|+++|++.... .-++++.+.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~--------~~~~-----d~---~~g~~~~~~~~~~~~~~~~~~~~- 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE--------VISS-----DF---CRGLMSDDENDQTVTGAAFDVLH- 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG--------EEEH-----HH---HHHHHCSSTTCGGGHHHHHHHHH-
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe--------EEcc-----HH---HHHHhcCcccchhhHHHHHHHHH-
Confidence 6899999999999999999999999999764211 1111 11 1256666543110 001111111
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH---
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR--- 1002 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~--- 1002 (1085)
... +.....+.....+.. ...|+|||||++||+|++.+|++|+|||||++||+.
T Consensus 64 ----------------~~~-~~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~ 120 (171)
T 4gp7_A 64 ----------------YIV-SKRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKN 120 (171)
T ss_dssp ----------------HHH-HHHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHT
T ss_pred ----------------HHH-HHHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhc
Confidence 111 112223443333322 246999999999999999999999999999999999
Q ss_pred -------------HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCE
Q 001400 1003 -------------AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1085)
Q Consensus 1003 -------------~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1085)
....+++.++++.++|.|+|++||+++ ..+.+++
T Consensus 121 R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~--~~~~~~~ 167 (171)
T 4gp7_A 121 RTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPE--EVEEVVF 167 (171)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHH--HHHHEEE
T ss_pred ccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHH--Hhhhhhh
Confidence 668899999988777999999999975 3344443
No 119
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.86 E-value=7.3e-22 Score=223.58 Aligned_cols=86 Identities=20% Similarity=0.207 Sum_probs=74.7
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE--E
Q 001400 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL--L 1040 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i--l 1040 (1085)
..||+|||||++||++|+ .+|++|+|||||++||+.....+.+.|+++. .|.|||+|||+++ +.+.+|++ +
T Consensus 218 ~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~v 294 (322)
T 1e69_A 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHGV 294 (322)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEEE
T ss_pred hhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEEE
Confidence 579999999999999997 6889999999999999999999999999984 5889999999964 56789986 8
Q ss_pred EEecCcEEEEecCCC
Q 001400 1041 FMKRGGELIYAGPLG 1055 (1085)
Q Consensus 1041 ~l~~gG~~~~~g~~~ 1055 (1085)
+|.+|...+....++
T Consensus 295 ~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 295 TMVNGVSAIVPVEVE 309 (322)
T ss_dssp EESSSCEEEEECCC-
T ss_pred EEeCCEEEEEEEEcc
Confidence 888877777766654
No 120
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.85 E-value=1.6e-23 Score=221.05 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=95.8
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
++.+|+|+ ++|++++|+|||||||||||++|+|. +|+ +|+|............++.++|++|++
T Consensus 12 ~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~---~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 12 QKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQ---SKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp HHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHH---TTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred HHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCc---CCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 35688986 89999999999999999999999999 764 677732111111112356799999976
Q ss_pred HHHH-HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 227 RETL-DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l-~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+||+ .+..... + ...... ....++++++. |
T Consensus 76 ~enl~~~~~~~~------~---------~~~~~~------------------~~~~~~~~l~~-g--------------- 106 (208)
T 3b85_A 76 NEKIDPYLRPLH------D---------ALRDMV------------------EPEVIPKLMEA-G--------------- 106 (208)
T ss_dssp ----CTTTHHHH------H---------HHTTTS------------------CTTHHHHHHHT-T---------------
T ss_pred HHHHHHHHHHHH------H---------HHHHhc------------------cHHHHHHHHHh-C---------------
Confidence 5666 3321000 0 000000 01124444443 2
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHH
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1085)
+ ||||||+|||||+.+|++|+|||||+| ++..+.+.|+++ + .+++|+ ++|+..++
T Consensus 107 -l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~--~g~tii-vtHd~~~~ 161 (208)
T 3b85_A 107 -I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G--FGSKMV-VTGDITQV 161 (208)
T ss_dssp -S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C--TTCEEE-EEEC----
T ss_pred -C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c--CCCEEE-EECCHHHH
Confidence 2 999999999999999999999999999 888899999876 3 245666 77877655
No 121
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.85 E-value=3.1e-21 Score=221.62 Aligned_cols=84 Identities=24% Similarity=0.391 Sum_probs=72.7
Q ss_pred cccccCchhhhhHHHHHHHHh------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 302 EMLKGISGGQKKRLTTGELLV------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
+.+.+|||||||||+||+||+ .+|++|||||||+|||+.+...+++.|+++.+ .+. +|+.++|+... ...+
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~-tvi~itH~~~~-~~~~ 351 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNK-VIVFITHDREF-SEAF 351 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSS-EEEEEESCHHH-HTTC
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCC-EEEEEecchHH-HHhC
Confidence 455679999999999999999 79999999999999999999999999999865 344 55557788766 7889
Q ss_pred CeEEEecCCeEEE
Q 001400 376 DDVILLSEGQIVY 388 (1085)
Q Consensus 376 D~ii~L~~G~iv~ 388 (1085)
|++++|++|+++.
T Consensus 352 d~~~~l~~G~i~~ 364 (365)
T 3qf7_A 352 DRKLRITGGVVVN 364 (365)
T ss_dssp SCEEEEETTEEC-
T ss_pred CEEEEEECCEEEe
Confidence 9999999999874
No 122
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.83 E-value=2e-23 Score=231.36 Aligned_cols=158 Identities=13% Similarity=0.213 Sum_probs=118.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++|+|+|+.|++|++++|+||||||||||+++|+|++ +|+| ++|++|++.++. .|++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I---------------~~~v~q~~~lf~-~ti~ 170 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSV---------------LSFANHKSHFWL-ASLA 170 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEE---------------ECGGGTTSGGGG-GGGT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceE---------------EEEecCcccccc-ccHH
Confidence 36999999999999999999999999999999999987 6887 357888887666 4888
Q ss_pred H-HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 228 E-TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 228 E-~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
| ||.|.... . + .+...++.+ |++..| | ..
T Consensus 171 ~~ni~~~~~~-------~---~--------------------------------~~~~~i~~~-L~~gld---g----~~ 200 (305)
T 2v9p_A 171 DTRAALVDDA-------T---H--------------------------------ACWRYFDTY-LRNALD---G----YP 200 (305)
T ss_dssp TCSCEEEEEE-------C---H--------------------------------HHHHHHHHT-TTGGGG---T----CC
T ss_pred HHhhccCccc-------c---H--------------------------------HHHHHHHHH-hHccCC---c----cC
Confidence 7 77663110 0 0 022233333 444444 3 46
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|||||||| |||++.+|+||+ ||+||+.+...|.. + +|. .++...+|+| +|++|++
T Consensus 201 LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~----l------------tH~-~~~~~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 201 VSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY----L------------HSR-VQTFRFEQPC-TDESGEQ 255 (305)
T ss_dssp EECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----G------------TTT-EEEEECCCCC-CCC---C
T ss_pred cCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----H------------hCC-HHHHHhCCEE-EEeCCEE
Confidence 99999999 999999999999 99999999887752 1 233 2345678999 9999999
Q ss_pred EEecChhhHHHHHHhC
Q 001400 387 VYQGPRVSVLDFFASM 402 (1085)
Q Consensus 387 v~~G~~~~~~~~f~~~ 402 (1085)
++.|+++++..+|.++
T Consensus 256 v~~g~~~el~~~y~~l 271 (305)
T 2v9p_A 256 PFNITDADWKSFFVRL 271 (305)
T ss_dssp CCCCCHHHHHHHHHHS
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999999987666543
No 123
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.82 E-value=8.8e-23 Score=235.64 Aligned_cols=172 Identities=10% Similarity=0.097 Sum_probs=133.0
Q ss_pred eeecccceeeEeCCe--------------------EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC
Q 001400 148 LTILDDLSGIIRPSR--------------------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP 207 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~--------------------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~ 207 (1085)
..+|++||+.+++|+ +++|+||||||||||+|+|+|++++. +|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~---~GsI~~~g~~~t---- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEE---EGAAKTGVVEVT---- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTS---TTSCCCCC--------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCcc---CceEEECCeecc----
Confidence 568999999999999 99999999999999999999998876 899999987643
Q ss_pred CceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHH
Q 001400 208 PRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMK 287 (1085)
Q Consensus 208 ~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~ 287 (1085)
+ .+|++|++ .++.+|+.||+.++.. +..++++++
T Consensus 109 -~-~~~v~q~~-~~~~ltv~D~~g~~~~-------------------------------------------~~~~~~~L~ 142 (413)
T 1tq4_A 109 -M-ERHPYKHP-NIPNVVFWDLPGIGST-------------------------------------------NFPPDTYLE 142 (413)
T ss_dssp -C-CCEEEECS-SCTTEEEEECCCGGGS-------------------------------------------SCCHHHHHH
T ss_pred -e-eEEecccc-ccCCeeehHhhcccch-------------------------------------------HHHHHHHHH
Confidence 1 27899986 4778899888754210 011566788
Q ss_pred HhCCcccccccccCcccccCchh--hhhHHHHHHHHhC----------CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh-
Q 001400 288 ILGLDTCADTLVGDEMLKGISGG--QKKRLTTGELLVG----------PARVLFMDEISNGLDSSTTYQIIKYLKHSTR- 354 (1085)
Q Consensus 288 ~lgL~~~~dt~vg~~~~~~LSGG--qkqRvsia~al~~----------~p~vlllDEptsgLD~~~~~~i~~~l~~~~~- 354 (1085)
.++|.+.. .. .. |||| ||||+.||++|.. +|++++|||||+|||+.++.++.+.++++..
T Consensus 143 ~~~L~~~~-~~-----~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~ 215 (413)
T 1tq4_A 143 KMKFYEYD-FF-----II-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVN 215 (413)
T ss_dssp HTTGGGCS-EE-----EE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHH
T ss_pred HcCCCccC-Ce-----EE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 88887642 21 22 9999 9999999999999 9999999999999999999999999998752
Q ss_pred ---cc---CCEEEEEEecChhH--HHhhcCeEE
Q 001400 355 ---AL---DGTTVISLLQPAPE--AYELFDDVI 379 (1085)
Q Consensus 355 ---~~---~~t~ii~~~q~~~~--~~~~~D~ii 379 (1085)
.. ..++++...|...+ +.+++|+|.
T Consensus 216 ~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 216 TFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp HHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 21 23555545565555 667777664
No 124
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.82 E-value=2.8e-21 Score=199.06 Aligned_cols=149 Identities=17% Similarity=0.171 Sum_probs=100.2
Q ss_pred EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 933 (1085)
+++|+||||||||||+++|+|... |.++|++... ...++.+||++|+. ++.+++ +. .+..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-------i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~~~-- 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-------KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-FS-SKFF-- 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-------GGEEEEEEEEEC------CCEEEEEET------TCCEEE-EE-ETTC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-------CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-HH-hhcC--
Confidence 589999999999999999999653 2233332211 12356789999975 222222 11 0000
Q ss_pred cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHH-----HhcCCCEEEEeC--CCCCCCHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVE-----LVANPSIVFMDE--PTSGLDARAAAI 1006 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~a-----L~~~p~illlDE--PtsgLD~~~~~~ 1006 (1085)
.-.+..+.. +..||+|||||++||+| |+.+|++|+||| ||++||+.....
T Consensus 65 ------------------~~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~ 121 (178)
T 1ye8_A 65 ------------------TSKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDL 121 (178)
T ss_dssp ------------------CCSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHH
T ss_pred ------------------Ccccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHH
Confidence 000122222 24699999999999996 999999999999 999999999999
Q ss_pred HHHHHHHHHHCCceEEEEec---CccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1007 VMRTVRNIVNTGRTIVCTIH---QPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~~~H---~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
+.+.+++ .+.|+|+++| +.. .+...+|+ .+|+++...+.
T Consensus 122 l~~~l~~---~~~~~i~~~H~~h~~~-~~~~i~~r-----~~~~i~~~~~~ 163 (178)
T 1ye8_A 122 VRQIMHD---PNVNVVATIPIRDVHP-LVKEIRRL-----PGAVLIELTPE 163 (178)
T ss_dssp HHHHHTC---TTSEEEEECCSSCCSH-HHHHHHTC-----TTCEEEECCTT
T ss_pred HHHHHhc---CCCeEEEEEccCCCch-HHHHHHhc-----CCcEEEEecCc
Confidence 9988876 4677888886 544 35566776 45677765443
No 125
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.81 E-value=2.3e-20 Score=211.22 Aligned_cols=81 Identities=22% Similarity=0.328 Sum_probs=67.5
Q ss_pred ccccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 303 MLKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.+..||||||||++||++|+ .+|++|+|||||++||+.....+.+.++++.+ + ++++.++|. .++.+.+|++
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~-~~vi~~tH~-~~~~~~~d~~ 291 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--H-TQFIVITHN-KIVMEAADLL 291 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--T-SEEEEECCC-TTGGGGCSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcC--C-CeEEEEECC-HHHHhhCceE
Confidence 34579999999999999997 78999999999999999999999999998742 3 445556676 5678899987
Q ss_pred --EEecCCeEE
Q 001400 379 --ILLSEGQIV 387 (1085)
Q Consensus 379 --i~L~~G~iv 387 (1085)
++|.+|...
T Consensus 292 ~~v~~~~g~s~ 302 (322)
T 1e69_A 292 HGVTMVNGVSA 302 (322)
T ss_dssp EEEEESSSCEE
T ss_pred EEEEEeCCEEE
Confidence 788887654
No 126
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.81 E-value=4.9e-23 Score=237.71 Aligned_cols=171 Identities=14% Similarity=0.148 Sum_probs=133.8
Q ss_pred eEEeeeeeEEEeCCe--------------------EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhccc
Q 001400 842 LQLLVNVTGAFRPGV--------------------LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFA 901 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge--------------------~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~ 901 (1085)
..+|++||+++++|+ ++||+|+||||||||+++|+|... +.+|+|.++|.+.+
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~--p~~GsI~~~g~~~t----- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN--EEEGAAKTGVVEVT----- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT--TSTTSCCCCC---------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC--ccCceEEECCeecc-----
Confidence 357889999999999 999999999999999999999766 45789988887542
Q ss_pred ceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHH
Q 001400 902 RISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTI 979 (1085)
Q Consensus 902 ~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~i 979 (1085)
+ .+|++|++ .++.+|+.|++.++. + +..++++++.+++.+..... .||+| ||||+.|
T Consensus 109 ~-~~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~~~~-------~lS~G~~~kqrv~l 167 (413)
T 1tq4_A 109 M-ERHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYDFFI-------IISATRFKKNDIDI 167 (413)
T ss_dssp C-CCEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCSEEE-------EEESSCCCHHHHHH
T ss_pred e-eEEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccCCeE-------EeCCCCccHHHHHH
Confidence 1 27899975 467888888875532 1 11357888888876542221 28999 9999999
Q ss_pred HHHHhc----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----HCC----ceEEEEecCccH-HHHHhcCEE
Q 001400 980 AVELVA----------NPSIVFMDEPTSGLDARAAAIVMRTVRNIV-----NTG----RTIVCTIHQPSI-DIFESFDEL 1039 (1085)
Q Consensus 980 A~aL~~----------~p~illlDEPtsgLD~~~~~~i~~~l~~~~-----~~g----~tvi~~~H~~~~-~~~~~~d~i 1039 (1085)
|++|+. +|++++|||||+|||+.++..+++.|+++. +.| .+|++++|+.+. ++-+.+|++
T Consensus 168 a~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 168 AKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999999 999999999999999999999999999984 222 578899998762 255667777
Q ss_pred E
Q 001400 1040 L 1040 (1085)
Q Consensus 1040 l 1040 (1085)
.
T Consensus 248 ~ 248 (413)
T 1tq4_A 248 I 248 (413)
T ss_dssp H
T ss_pred H
Confidence 5
No 127
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.81 E-value=4.4e-21 Score=197.53 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=101.8
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1085)
.++|+||||||||||+++|+|.+. ....|... .+......++.++|++|+. |+.+++ ++ +.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~~-~~------ 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--KRAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-FS-SK------ 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--GGEEEEEE---EEEC------CCEEEEEET------TCCEEE-EE-ET------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--CcCCCEEh---hhhccccccceeEEEeecC------cHHHHH-HH-hh------
Confidence 589999999999999999999985 23344321 1111102345789999975 222222 10 00
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHH--
Q 001400 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGEL-- 320 (1085)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~a-- 320 (1085)
+... +..+ ++.+..||||||||++||++
T Consensus 63 -----------------------------------------------~~~~--~~~~-~~~~~~lSgG~~qr~~la~aa~ 92 (178)
T 1ye8_A 63 -----------------------------------------------FFTS--KKLV-GSYGVNVQYFEELAIPILERAY 92 (178)
T ss_dssp -----------------------------------------------TCCC--SSEE-TTEEECHHHHHHHHHHHHHHHH
T ss_pred -----------------------------------------------cCCc--cccc-cccccCcCHHHHHHHHHHhhcc
Confidence 0000 0111 12345699999999999996
Q ss_pred ---HhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe--cChhHHHhhcCeEEEecCCeEEE
Q 001400 321 ---LVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL--QPAPEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 321 ---l~~~p~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~--q~~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
++.+|++++||| ||++||+.....+.+.+++ .+.++++++| |+.+.+..++|+ .+|+++.
T Consensus 93 ~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~----~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 93 REAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD----PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC----TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred ccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc----CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 999999999999 9999999999999988874 2455777664 788888888998 5566655
No 128
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.81 E-value=4.7e-21 Score=196.41 Aligned_cols=66 Identities=14% Similarity=0.042 Sum_probs=55.7
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH----------------HHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS----------------TTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~----------------~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
..|||||||++||+++..+|++++|||||++||+. ...++.+.++++.+. | .+++.++|+.+
T Consensus 83 ~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~-g-~tvi~vtH~~~ 160 (171)
T 4gp7_A 83 VQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQRE-G-FRYVYILNSPE 160 (171)
T ss_dssp CSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHH-T-CSEEEEECSHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhc-C-CcEEEEeCCHH
Confidence 36999999999999999999999999999999999 568889988887654 4 44555778887
Q ss_pred HHHh
Q 001400 370 EAYE 373 (1085)
Q Consensus 370 ~~~~ 373 (1085)
++..
T Consensus 161 ~~~~ 164 (171)
T 4gp7_A 161 EVEE 164 (171)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7743
No 129
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.81 E-value=1e-23 Score=223.35 Aligned_cols=184 Identities=15% Similarity=0.048 Sum_probs=115.5
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
...+++| .+|++|++++|+||||||||||+++|+|... .+.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~--~i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP--NLHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHST--TCEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC--ceEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 3456777 6899999999999999999999999999754 123333333332221 2245689999998777777777
Q ss_pred HHHHHhhhhcC---CCcccHHHHHHHHHHH------HHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Q 001400 921 ESLLFSAWLRL---PSEIELETQRAFVEEV------MELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVF 991 (1085)
Q Consensus 921 e~l~~~~~~~~---~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~ill 991 (1085)
+++.+...... .......+.++.+++. ++.+++....+... ..|| +|+.+|++++
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~ 146 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQD 146 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHH
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHH
Confidence 76542211110 0012233333334443 33333333333321 3466 8899999999
Q ss_pred EeCCCCCC----CHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 992 MDEPTSGL----DARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 992 lDEPtsgL----D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
|||||+++ |+..+..+++.++++.+ .|.|||++|||++ ++...||++++|.+.|
T Consensus 147 LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~~p~ 205 (207)
T 1znw_A 147 LQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGTAPG 205 (207)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC-----
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhccCC
Confidence 99999998 78899999999999874 5899999999987 5788899999986554
No 130
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=1.6e-20 Score=209.42 Aligned_cols=171 Identities=15% Similarity=0.137 Sum_probs=124.5
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCC-CCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSP 915 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~-~~~ 915 (1085)
+++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH--HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 46888899999999999999999999999999754 3469999999876421 22 346899999988 888
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEe
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMD 993 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlD 993 (1085)
..|++|++.+... +. .+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 169 ~~~v~e~l~~~~~-~~-~d----------~~lldt~gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD 228 (302)
T 3b9q_A 169 ATVLSKAVKRGKE-EG-YD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD 228 (302)
T ss_dssp HHHHHHHHHHHHH-TT-CS----------EEEECCCCCSSCCHHHH-----HHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred HHHHHHHHHHHHH-cC-Cc----------chHHhcCCCCcchhHHH-----HHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence 8999999987532 11 00 12344555554444332 3688 999999999999999 99999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-HCCceEEEEecCcc-------HH-HHHhcCEEEEEecC
Q 001400 994 EPTSGLDARAAAIVMRTVRNIV-NTGRTIVCTIHQPS-------ID-IFESFDELLFMKRG 1045 (1085)
Q Consensus 994 EPtsgLD~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~-------~~-~~~~~d~il~l~~g 1045 (1085)
||+|||+..+. +++. ..|.|+|++||... +. .....+.+.++..|
T Consensus 229 -ptsglD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~G 282 (302)
T 3b9q_A 229 -GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 282 (302)
T ss_dssp -GGGGGGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred -CCCCcCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCC
Confidence 99999988552 4444 35899999999321 11 22345677877754
No 131
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.77 E-value=2.1e-20 Score=208.49 Aligned_cols=174 Identities=19% Similarity=0.188 Sum_probs=126.7
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------C--CceEEEEccCCC-C
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P--PRTSAYVSQQDW-Q 220 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~--~~~~~yv~Q~d~-~ 220 (1085)
++++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... . ++.++|++|++. .
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~ 166 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKA 166 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CC
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCcc
Confidence 46789999999999999999999999999999999765 899999998764321 1 235899999988 8
Q ss_pred CCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccccc
Q 001400 221 VAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVG 300 (1085)
Q Consensus 221 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg 300 (1085)
++.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 167 ~~~~~v~e~l~~~~~~-~----~d--------------------------------------~~lldt~gl~~~~~~~~- 202 (302)
T 3b9q_A 167 KAATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM- 202 (302)
T ss_dssp CHHHHHHHHHHHHHHT-T----CS--------------------------------------EEEECCCCCSSCCHHHH-
T ss_pred CHHHHHHHHHHHHHHc-C----Cc--------------------------------------chHHhcCCCCcchhHHH-
Confidence 8999999999875321 0 00 00223456655544443
Q ss_pred CcccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEec---------Chh
Q 001400 301 DEMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ---------PAP 369 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q---------~~~ 369 (1085)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +++.+..+.+.++ ++| ...
T Consensus 203 ----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~~g~~l~ 267 (302)
T 3b9q_A 203 ----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVS 267 (302)
T ss_dssp ----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EECCSSCSCTHHHHH
T ss_pred ----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH------HHHHHhcCCCEEE-EeCCCCCCccChhee
Confidence 4599 999999999999999 99999 99999998642 3343333445555 555 223
Q ss_pred HHHhhcCeEEEecCCeE
Q 001400 370 EAYELFDDVILLSEGQI 386 (1085)
Q Consensus 370 ~~~~~~D~ii~L~~G~i 386 (1085)
.+....+.|..+..|+.
T Consensus 268 ~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 268 VVEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHHCCCEEEEECSSS
T ss_pred hHHHHCCCEEEEeCCCC
Confidence 44456678888888865
No 132
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.76 E-value=1.2e-22 Score=225.20 Aligned_cols=147 Identities=13% Similarity=0.118 Sum_probs=109.5
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH-
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE- 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e- 921 (1085)
.+|++||++|++|++++|+||||||||||+++|+|.. +|+|. +|++|++.++.. |++|
T Consensus 114 ~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~-----~G~I~---------------~~v~q~~~lf~~-ti~~~ 172 (305)
T 2v9p_A 114 NALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL-----GGSVL---------------SFANHKSHFWLA-SLADT 172 (305)
T ss_dssp HHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH-----TCEEE---------------CGGGTTSGGGGG-GGTTC
T ss_pred hhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc-----CceEE---------------EEecCccccccc-cHHHH
Confidence 4789999999999999999999999999999999965 46663 456777766653 7776
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
|+.|.. +... .+++.++.+ +.+..+ +..|||||||| ||||+++|+||| ||+||+
T Consensus 173 ni~~~~------~~~~-----~~~~~i~~~-L~~gld-------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 173 RAALVD------DATH-----ACWRYFDTY-LRNALD-------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp SCEEEE------EECH-----HHHHHHHHT-TTGGGG-------TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred hhccCc------cccH-----HHHHHHHHH-hHccCC-------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 775531 1111 234455543 322222 24799999999 999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCC
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPL 1054 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~ 1054 (1085)
.++..++. ++|+++ .++.+|++ +|+ +|++++.|+.
T Consensus 227 ~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~-~G~iv~~g~~ 261 (305)
T 2v9p_A 227 QAEDRYLY--------------LHSRVQ--TFRFEQPC-TDE-SGEQPFNITD 261 (305)
T ss_dssp TTCGGGGG--------------GTTTEE--EEECCCCC-CCC----CCCCCCH
T ss_pred HHHHHHHH--------------HhCCHH--HHHhCCEE-EEe-CCEEEEeCCH
Confidence 99988762 189876 45789999 887 4788888764
No 133
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=4e-20 Score=203.14 Aligned_cols=147 Identities=16% Similarity=0.223 Sum_probs=89.6
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCCc
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGSK 242 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~ 242 (1085)
.++|+||||||||||+|+|+|...+. +|+|.++|.++......+.++|++|++.+++.+||.||+.|+........
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~---~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSR---KASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCC---CCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHH-
Confidence 47999999999999999999999876 89999999887655556789999999998999999999988654321100
Q ss_pred hhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHh
Q 001400 243 YDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLV 322 (1085)
Q Consensus 243 ~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~ 322 (1085)
.+ . +...+. ....+... ..||||||||+++||+++
T Consensus 80 ~~------------------~------------------i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~ 114 (270)
T 3sop_A 80 WE------------------P------------------IEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHC 114 (270)
T ss_dssp SH------------------H------------------HHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCE
T ss_pred HH------------------H------------------HHHHHH----HHHHhhhH-----HhcCcccchhhhhheeee
Confidence 00 0 111111 11122222 359999999999999987
Q ss_pred CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecCh
Q 001400 323 GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1085)
. ++|+|||++|||+.. .+.++.+.+. .++|+++ +..
T Consensus 115 ~---lllldep~~gL~~lD----~~~l~~L~~~--~~vI~Vi-~K~ 150 (270)
T 3sop_A 115 C---LYFISPTGHSLRPLD----LEFMKHLSKV--VNIIPVI-AKA 150 (270)
T ss_dssp E---EEEECCCSSSCCHHH----HHHHHHHHTT--SEEEEEE-TTG
T ss_pred e---eEEEecCCCcCCHHH----HHHHHHHHhc--CcEEEEE-ecc
Confidence 5 999999999999987 3444444432 4555544 444
No 134
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.76 E-value=1.4e-20 Score=206.76 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=95.7
Q ss_pred EEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCccc
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIE 936 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~ 936 (1085)
.+||+||||||||||+++|+|... +.+|+|.++|.++.....++.+||++|++.+++.+||.|++.|+...... . .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~--~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~-~-~ 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV--SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNE-N-C 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC--------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCT-T-C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC--CCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccH-H-H
Confidence 479999999999999999999765 46899999998775555567899999999999999999999887543211 1 1
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 937 LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 937 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
.+ .+.+.++ ....+... ..||+|||||+++||+++. +++|||||+|||+.. .++++.+.+
T Consensus 80 ~~----~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~ 139 (270)
T 3sop_A 80 WE----PIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSK 139 (270)
T ss_dssp SH----HHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHT
T ss_pred HH----HHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHh
Confidence 11 1222222 12222222 3699999999999999886 999999999999987 445555554
Q ss_pred CCceEEEEecCcc
Q 001400 1017 TGRTIVCTIHQPS 1029 (1085)
Q Consensus 1017 ~g~tvi~~~H~~~ 1029 (1085)
. .+||+++|..+
T Consensus 140 ~-~~vI~Vi~K~D 151 (270)
T 3sop_A 140 V-VNIIPVIAKAD 151 (270)
T ss_dssp T-SEEEEEETTGG
T ss_pred c-CcEEEEEeccc
Confidence 5 89999998643
No 135
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.74 E-value=1.2e-19 Score=205.14 Aligned_cols=131 Identities=17% Similarity=0.132 Sum_probs=102.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+++++|+.+++|++++|+|+||||||||+++|+|... +.+|.|.++|.+... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~--~~~g~i~i~~~~e~~~~~~~~~i~~~~-------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP--KEERIISIEDTEEIVFKHHKNYTQLFF-------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC--TTSCEEEEESSCCCCCSSCSSEEEEEC--------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc--CCCcEEEECCeeccccccchhEEEEEe--------------
Confidence 6889999999999999999999999999999999876 358999999864110 00111122211
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+ +||+||++||+||..+|++|+|||||+.
T Consensus 224 ---------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~~---- 252 (330)
T 2pt7_A 224 ---------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRSS---- 252 (330)
T ss_dssp ---------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCST----
T ss_pred ---------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCChH----
Confidence 1 7999999999999999999999999982
Q ss_pred HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecCc
Q 001400 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRGG 1046 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG 1046 (1085)
.+++.|+.+...+.|+|+|+|+++ ..+.+||+++|.+|+
T Consensus 253 ---e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 253 ---EAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---HHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCC
Confidence 356777776533358999999987 567889999998753
No 136
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=9.9e-20 Score=206.59 Aligned_cols=170 Identities=15% Similarity=0.150 Sum_probs=125.0
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCC-CCCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDI-HSPG 916 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~-~~~~ 916 (1085)
++|+++++|++++|+||||||||||++.|+|... +..|+|.++|.+.... .+ ++.++|++|++. ..|.
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~--~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK--NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc--ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 5788889999999999999999999999999754 3469999999876421 12 346899999988 8888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDE 994 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDE 994 (1085)
.|++|++.+... + ..+ ..+++.+++.+..+... .+|| |||++|||+|+.+|+ +|+||
T Consensus 227 ~tv~e~l~~~~~-~-~~d----------~~lldt~Gl~~~~~~~~-----~eLS---kqr~~iaral~~~P~e~lLvLD- 285 (359)
T 2og2_A 227 TVLSKAVKRGKE-E-GYD----------VVLCDTSGRLHTNYSLM-----EELI---ACKKAVGKIVSGAPNEILLVLD- 285 (359)
T ss_dssp HHHHHHHHHHHH-T-TCS----------EEEEECCCCSSCCHHHH-----HHHH---HHHHHHHHHSTTCCSEEEEEEE-
T ss_pred hhHHHHHHHHHh-C-CCH----------HHHHHhcCCChhhhhHH-----HHHH---HHHHHHHHHHhcCCCceEEEEc-
Confidence 999999987532 1 101 12344556555444332 3688 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEecCcc-------HH-HHHhcCEEEEEecC
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------ID-IFESFDELLFMKRG 1045 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~-~~~~~d~il~l~~g 1045 (1085)
||+|||+..+. +++.+ .|.|+|++||... +. .....+.|.++..|
T Consensus 286 pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~G 339 (359)
T 2og2_A 286 GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVG 339 (359)
T ss_dssp GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECS
T ss_pred CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCC
Confidence 99999988653 34443 5899999999311 11 22344677777654
No 137
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=8.8e-22 Score=210.08 Aligned_cols=156 Identities=12% Similarity=0.074 Sum_probs=98.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC----CCceEEEEccCCCCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV----PPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~----~~~~~~yv~Q~d~~~~~ 223 (1085)
..-|+|||+.+++|++++|+||||||||||+++|+|.+ | |+|.+ |.+..... ..+.++|++|++..|+.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 82 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFED 82 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHH
Confidence 34799999999999999999999999999999999987 3 88888 76653322 23568999998765554
Q ss_pred CCH-HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCc
Q 001400 224 MTV-RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDE 302 (1085)
Q Consensus 224 lTV-~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~ 302 (1085)
++. .+++.+. ...+ ..|.. ....++++++...+ ..+.
T Consensus 83 ~~~~~~~l~~~-~~~~--~~~g~--------------------------------~~~~i~~~l~~~~~-----~il~-- 120 (218)
T 1z6g_A 83 KLKNEDFLEYD-NYAN--NFYGT--------------------------------LKSEYDKAKEQNKI-----CLFE-- 120 (218)
T ss_dssp HHHTTCEEEEE-EETT--EEEEE--------------------------------EHHHHHHHHHTTCE-----EEEE--
T ss_pred hhhccchhhhh-hccc--ccCCC--------------------------------cHHHHHHHHhCCCc-----EEEE--
Confidence 321 1111110 0000 00000 01123444443221 1221
Q ss_pred ccccCchhhhhHHHH-----HHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 303 MLKGISGGQKKRLTT-----GELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsi-----a~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
..+|||||||+++ +++++.+|++++|||||+++|..+...|.+.+.....
T Consensus 121 --~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 121 --MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp --ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred --ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 3699999999999 8899999999999999999999999999988887644
No 138
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.74 E-value=3.1e-22 Score=213.59 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=108.7
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----hcccceEEEEccCCCCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----ETFARISGYCEQNDIHSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----~~~~~~~gy~~Q~~~~~~~~ 917 (1085)
..-|+||||+|++|++++|+||||||||||+++|+|..+ |+|.+ |.+... ...++.++|++|++..++.+
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p-----G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP-----NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHST-----TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhCC-----CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346889999999999999999999999999999999652 77887 665321 11345678999986654432
Q ss_pred CH-HHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH-----HHHHhcCCCEE
Q 001400 918 TV-LESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI-----AVELVANPSIV 990 (1085)
Q Consensus 918 tv-~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i-----A~aL~~~p~il 990 (1085)
+. .+++.+ ..+... .... ...++++++...+. +.+ ..||||||||++| |++++.+|+++
T Consensus 84 ~~~~~~l~~-~~~~~~~~g~~----~~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 84 LKNEDFLEY-DNYANNFYGTL----KSEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp HHTTCEEEE-EEETTEEEEEE----HHHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred hhccchhhh-hhcccccCCCc----HHHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 21 111110 001100 0111 12356666654321 111 2589999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHH-------CCceEEEEecCccHHHHHhcCEE
Q 001400 991 FMDEPTSGLDARAAAIVMRTVRNIVN-------TGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i~~~l~~~~~-------~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+|||||+++|..+...|.+.+.+... .+.+.|+++|+++ +.+..++++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~-ea~~~~~~i 204 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLT-LTYQQLKNY 204 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHH-HHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHH-HHHHHHHHH
Confidence 99999999999999999988887642 3455566666654 344444443
No 139
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.74 E-value=1.9e-19 Score=204.31 Aligned_cols=173 Identities=19% Similarity=0.200 Sum_probs=127.1
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---------CCceEEEEccCCC-CC
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---------PPRTSAYVSQQDW-QV 221 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---------~~~~~~yv~Q~d~-~~ 221 (1085)
+++|+.+++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+..... .++.++|++|++. .+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~---~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNE---GTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcccc---CCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 4689999999999999999999999999999999765 899999998764321 1236899999987 88
Q ss_pred CCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC
Q 001400 222 AEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD 301 (1085)
Q Consensus 222 ~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~ 301 (1085)
+.+||+|++.++... + ++ ..+++.+|+.+..+..+
T Consensus 225 p~~tv~e~l~~~~~~-~----~d--------------------------------------~~lldt~Gl~~~~~~~~-- 259 (359)
T 2og2_A 225 AATVLSKAVKRGKEE-G----YD--------------------------------------VVLCDTSGRLHTNYSLM-- 259 (359)
T ss_dssp HHHHHHHHHHHHHHT-T----CS--------------------------------------EEEEECCCCSSCCHHHH--
T ss_pred hhhhHHHHHHHHHhC-C----CH--------------------------------------HHHHHhcCCChhhhhHH--
Confidence 999999999875321 0 00 00123456655444433
Q ss_pred cccccCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC---------hhH
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPAR--VLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP---------APE 370 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~--vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~---------~~~ 370 (1085)
..|| |||++||++++.+|+ +|+|| ||+|||+.... +.+.+..+.+.|+ ++|. ...
T Consensus 260 ---~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~------~~~~~~~g~t~ii-iThlD~~~~gG~~lsi 325 (359)
T 2og2_A 260 ---EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA------REFNEVVGITGLI-LTKLDGSARGGCVVSV 325 (359)
T ss_dssp ---HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH------HHHHHHTCCCEEE-EESCTTCSCTHHHHHH
T ss_pred ---HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH------HHHHHhcCCeEEE-EecCcccccccHHHHH
Confidence 4599 999999999999999 99999 99999998653 3333333445555 5552 234
Q ss_pred HHhhcCeEEEecCCeE
Q 001400 371 AYELFDDVILLSEGQI 386 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~i 386 (1085)
.....+.|..+..|+.
T Consensus 326 ~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 326 VEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHhCCCEEEEeCCCC
Confidence 4456678888887764
No 140
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.74 E-value=1.1e-17 Score=190.31 Aligned_cols=86 Identities=12% Similarity=0.090 Sum_probs=74.7
Q ss_pred Ccccc-cCchhhhhHHHHHHHHh---------CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 301 DEMLK-GISGGQKKRLTTGELLV---------GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 301 ~~~~~-~LSGGqkqRvsia~al~---------~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
+..++ .+|||||||++||++|+ ++|+||+|||||++||+..+..+++.++++. .++|+++|. ++
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----qt~i~~th~-~~ 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----QAIVTGTEL-AP 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----EEEEEESSC-CT
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----cEEEEEEec-cc
Confidence 44566 69999999999999999 8999999999999999999999999998642 566667774 33
Q ss_pred HHhhcCeEEEecCCeEEEecChhhH
Q 001400 371 AYELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 371 ~~~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
.+|++++|++|+++..|+++++
T Consensus 333 ---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 ---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp ---TCSEEEEEETTEEEECCCTTTS
T ss_pred ---cCCEEEEEECCEEEecCCHHHH
Confidence 8999999999999999988764
No 141
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.73 E-value=2.4e-17 Score=187.79 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=68.6
Q ss_pred CCCCCHHHHH------HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRK------RLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrq------rl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+..||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+.|.|||+|||+++ +...||++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~~ 323 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 323 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCEE
Confidence 3579999999 677888888999999999999999999999999999998777899999999964 56889999
Q ss_pred EEEe
Q 001400 1040 LFMK 1043 (1085)
Q Consensus 1040 l~l~ 1043 (1085)
++|.
T Consensus 324 ~~l~ 327 (339)
T 3qkt_A 324 IRIS 327 (339)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9986
No 142
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.72 E-value=1e-20 Score=200.34 Aligned_cols=184 Identities=10% Similarity=0.054 Sum_probs=113.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
.++++| ..+++|++++|+||||||||||+++|+|.++. +.+.+.+.+.+... ..++.++|++|++..++.+|+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~-~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN---LHFSVSATTRAPRP-GEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT---CEECCCEESSCCCT-TCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc---eEEcccccccCCcc-cccCCCeeEecCHHHHHHHHhc
Confidence 467888 68999999999999999999999999999852 23332233322111 1235689999998888888888
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH------HHHhCCcccccccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI------MKILGLDTCADTLVGD 301 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~------l~~lgL~~~~dt~vg~ 301 (1085)
+++.+.....+....+....+ .. +.++++. ++.+|+...++..+
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~-~~---------------------------~~~~~~~~~~~~~l~~~gl~~~~~~~~-- 132 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQ-PV---------------------------RAAAATGVPVLIEVDLAGARAIKKTMP-- 132 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHH-HH---------------------------HHHHHHTCCEEEECCHHHHHHHHHHCT--
T ss_pred CCceeehhhcCchhhcCCcHH-HH---------------------------HHHHHcCCeEEEEeCHHHHHHHHHhcC--
Confidence 876432211110000000000 00 0112221 23344443333332
Q ss_pred cccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCC----CHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 302 EMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGL----DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 302 ~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgL----D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
+.|| +|+.+|++++|||||+|| |+..+..+.+.++++.+..+. +++.++|+.+++..++|+
T Consensus 133 ---~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~-tvi~vtHdl~~~~~~~d~ 197 (207)
T 1znw_A 133 ---EAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDF-DKVVVNRRLESACAELVS 197 (207)
T ss_dssp ---TSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGS-SEEEECSSHHHHHHHHHH
T ss_pred ---CcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccC-cEEEECCCHHHHHHHHHH
Confidence 3466 889999999999999998 788999999999998754444 455678999999999999
Q ss_pred EEEec
Q 001400 378 VILLS 382 (1085)
Q Consensus 378 ii~L~ 382 (1085)
|++|.
T Consensus 198 i~~l~ 202 (207)
T 1znw_A 198 LLVGT 202 (207)
T ss_dssp HHC--
T ss_pred HHHhc
Confidence 99984
No 143
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.72 E-value=3e-19 Score=200.14 Aligned_cols=128 Identities=9% Similarity=0.045 Sum_probs=96.9
Q ss_pred cceee-EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 153 DLSGI-IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 153 ~vs~~-i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|++.. +++|++++|+||||||||||+++|+|.+.+. .|. +.++||+|++.+++. |++||+.
T Consensus 81 ~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~---~G~--------------~~v~~v~qd~~~~~~-t~~e~~~ 142 (312)
T 3aez_A 81 PQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARW---DHH--------------PRVDLVTTDGFLYPN-AELQRRN 142 (312)
T ss_dssp CCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTS---TTC--------------CCEEEEEGGGGBCCH-HHHHHTT
T ss_pred cccccCCCCCEEEEEECCCCchHHHHHHHHHhhcccc---CCC--------------CeEEEEecCccCCcc-cHHHHHH
Confidence 45443 8999999999999999999999999999763 231 368999999998888 9999985
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
+... .+.... .+ ...+.++|+.++ ....++.+ ..+||||
T Consensus 143 ~~~~-~g~~~~-------------------~d---------------~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~ 181 (312)
T 3aez_A 143 LMHR-KGFPES-------------------YN---------------RRALMRFVTSVK-SGSDYACA-----PVYSHLH 181 (312)
T ss_dssp CTTC-TTSGGG-------------------BC---------------HHHHHHHHHHHH-TTCSCEEE-----EEEETTT
T ss_pred HHHh-cCCChH-------------------HH---------------HHHHHHHHHHhC-CCcccCCc-----ccCChhh
Confidence 4211 111000 00 123556677777 44333433 4699999
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCH
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDS 339 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~ 339 (1085)
+||+++|++++.+|+||++|||+..+|+
T Consensus 182 ~qRv~~a~al~~~p~ilIlDep~~~~d~ 209 (312)
T 3aez_A 182 YDIIPGAEQVVRHPDILILEGLNVLQTG 209 (312)
T ss_dssp TEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhhhHHHhccCCCEEEECCccccCCc
Confidence 9999999999999999999999999986
No 144
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.6e-19 Score=211.18 Aligned_cols=179 Identities=15% Similarity=0.136 Sum_probs=137.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc---cCCCC--------CCCceEEEEcc
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH---GFKEF--------VPPRTSAYVSQ 216 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~---~~~~~--------~~~~~~~yv~Q 216 (1085)
..+|+++ +.|.+|++++|+|||||||||||++|+|..+++ .|.|.++|. ++.++ ..++.++|++|
T Consensus 145 ~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~---~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q 220 (438)
T 2dpy_A 145 VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRAD---VIVVGLIGERGREVKDFIENILGPDGRARSVVIAAP 220 (438)
T ss_dssp CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEEC
T ss_pred ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCC---eEEEEEeceecHHHHHHHHhhccccccCceEEEEEC
Confidence 5699999 999999999999999999999999999998876 899999997 44321 12467999999
Q ss_pred C-CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccc
Q 001400 217 Q-DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCA 295 (1085)
Q Consensus 217 ~-d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~ 295 (1085)
+ +..++.+||.+|+.+.++.... . + .+. ....
T Consensus 221 ~~~~~~~~~~v~~~~~~~ae~~~~--------------~--~----~~v---------------------------~~~l 253 (438)
T 2dpy_A 221 ADVSPLLRMQGAAYATRIAEDFRD--------------R--G----QHV---------------------------LLIM 253 (438)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHT--------------T--T----CEE---------------------------EEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHh--------------C--C----CCH---------------------------HHHH
Confidence 5 5567788999999876432100 0 0 000 0001
Q ss_pred cccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCE-----EEEEEecCh
Q 001400 296 DTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGT-----TVISLLQPA 368 (1085)
Q Consensus 296 dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t-----~ii~~~q~~ 368 (1085)
| .+..+|||| |||+|| +++|++ |+|||+.+...+.+.+.++.+. .+++ +|+..+|+.
T Consensus 254 d------~l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl 317 (438)
T 2dpy_A 254 D------SLTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQ 317 (438)
T ss_dssp E------CHHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCS
T ss_pred H------hHHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCc
Confidence 1 134599999 999999 888887 9999999999999999887542 1243 566677777
Q ss_pred hHHHhhcCeEEEecCCeEEEecChhhH
Q 001400 369 PEAYELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 369 ~~~~~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
. ..++|++++|.+|+++..|+..++
T Consensus 318 ~--~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 318 Q--DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp C--CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred c--chhhceEEEEeCcEEEEeCCHHHc
Confidence 6 678999999999999999987654
No 145
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=1.4e-19 Score=211.65 Aligned_cols=186 Identities=15% Similarity=0.081 Sum_probs=141.0
Q ss_pred ccccccccccC-CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCc---cCCh--------
Q 001400 830 VELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGY---PKRQ-------- 897 (1085)
Q Consensus 830 ~~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~---~~~~-------- 897 (1085)
.+.++..+.++ +..+|+++ +.|.+|++++|+|+||||||||+++|+|... +..|.|.++|. +...
T Consensus 132 l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~--~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 132 LQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR--ADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp TTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred eEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC--CCeEEEEEeceecHHHHHHHHhhccc
Confidence 44555555555 56799999 9999999999999999999999999999766 45899999998 3322
Q ss_pred hcccceEEEEccC-CCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001400 898 ETFARISGYCEQN-DIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1085)
Q Consensus 898 ~~~~~~~gy~~Q~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqr 976 (1085)
...++.++|++|+ +..++.+|+.+|+.+.+....... .++ ..+.+. ...||+|| ||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~----------~~v------~~~ld~------l~~lS~g~-qr 265 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRG----------QHV------LLIMDS------LTRYAMAQ-RE 265 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTT----------CEE------EEEEEC------HHHHHHHH-HH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCC----------CCH------HHHHHh------HHHHHHHH-HH
Confidence 2356789999995 444567889999877543210000 000 111121 24699999 99
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---C-Cc-----eEEEEecCccHHHHHhcCEEEEEecCcE
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---T-GR-----TIVCTIHQPSIDIFESFDELLFMKRGGE 1047 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~---~-g~-----tvi~~~H~~~~~~~~~~d~il~l~~gG~ 1047 (1085)
++|| +.+|++ |+|||+.....+.++++++.+ + |. ||++++||++ ...+|++++|.+ |+
T Consensus 266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~iad~v~~l~d-G~ 332 (438)
T 2dpy_A 266 IALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIADSARAILD-GH 332 (438)
T ss_dssp HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHHHHHHHHSS-EE
T ss_pred HHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhhceEEEEeC-cE
Confidence 9999 888988 999999999999999999865 3 64 9999999987 356899999974 78
Q ss_pred EEEecCC
Q 001400 1048 LIYAGPL 1054 (1085)
Q Consensus 1048 ~~~~g~~ 1054 (1085)
++..|+.
T Consensus 333 Ivl~~~~ 339 (438)
T 2dpy_A 333 IVLSRRL 339 (438)
T ss_dssp EEECHHH
T ss_pred EEEeCCH
Confidence 9888754
No 146
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.70 E-value=3.1e-17 Score=186.51 Aligned_cols=80 Identities=13% Similarity=0.159 Sum_probs=71.5
Q ss_pred CCCHHHHHHHHHHHHHh---------cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCE
Q 001400 968 GLSTEQRKRLTIAVELV---------ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDE 1038 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~---------~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~ 1038 (1085)
.||+|||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. + . .+|+
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~-~---~~~~ 336 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-A-P---GAAL 336 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-C-T---TCSE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-c-c---cCCE
Confidence 59999999999999999 8999999999999999999999999998863 799999994 4 2 7899
Q ss_pred EEEEecCcEEEEecCCCC
Q 001400 1039 LLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1039 il~l~~gG~~~~~g~~~~ 1056 (1085)
+++|++ |+++..|+..+
T Consensus 337 i~~l~~-G~i~~~g~~~~ 353 (359)
T 2o5v_A 337 TLRAQA-GRFTPVADEEM 353 (359)
T ss_dssp EEEEET-TEEEECCCTTT
T ss_pred EEEEEC-CEEEecCCHHH
Confidence 999985 78999887653
No 147
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.69 E-value=4e-18 Score=192.78 Aligned_cols=133 Identities=14% Similarity=0.167 Sum_probs=99.7
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
+++++|+.+++|++++|+|||||||||||++|+|.+++. +|.|+++|.+ +.. .+..
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~---~g~i~i~~~~--e~~--------------~~~~----- 215 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKE---ERIISIEDTE--EIV--------------FKHH----- 215 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTT---SCEEEEESSC--CCC--------------CSSC-----
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCC---CcEEEECCee--ccc--------------cccc-----
Confidence 899999999999999999999999999999999999876 8999999853 110 0000
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCch
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISG 309 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSG 309 (1085)
+ .. . ..+ .+ |
T Consensus 216 -----~-----~~----------------------------------------------i-------~~~-----~g--g 225 (330)
T 2pt7_A 216 -----K-----NY----------------------------------------------T-------QLF-----FG--G 225 (330)
T ss_dssp -----S-----SE----------------------------------------------E-------EEE-----CB--T
T ss_pred -----h-----hE----------------------------------------------E-------EEE-----eC--C
Confidence 0 00 0 000 01 8
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
||+||++||+||..+|+++++||||+. ++.+.|+.+.. +++++++++|... +.+.+|++++|.+|+.
T Consensus 226 g~~~r~~la~aL~~~p~ilildE~~~~-------e~~~~l~~~~~--g~~tvi~t~H~~~-~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 226 NITSADCLKSCLRMRPDRIILGELRSS-------EAYDFYNVLCS--GHKGTLTTLHAGS-SEEAFIRLANMSSSNS 292 (330)
T ss_dssp TBCHHHHHHHHTTSCCSEEEECCCCST-------HHHHHHHHHHT--TCCCEEEEEECSS-HHHHHHHHHHHHHTSG
T ss_pred ChhHHHHHHHHhhhCCCEEEEcCCChH-------HHHHHHHHHhc--CCCEEEEEEcccH-HHHHhhhheehhcCCc
Confidence 999999999999999999999999982 35566666542 4433344445544 7889999999988864
No 148
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.69 E-value=6.1e-18 Score=189.20 Aligned_cols=182 Identities=15% Similarity=0.133 Sum_probs=113.1
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
.+|+++++.+++|++++|+|+||||||||++.|+|... +..| .+.+.+.........+++.++.|... +++.+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~--~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG--TAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH--HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH--HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhcc
Confidence 35789999999999999999999999999999999643 1235 55443333222222223333333221 12223
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH-HHHHHHHHHHhcCCCEEEEeCCCC---
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ-RKRLTIAVELVANPSIVFMDEPTS--- 997 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq-rqrl~iA~aL~~~p~illlDEPts--- 997 (1085)
++.... + ...+..+.++++++...+. +.+. +..+|.+| +||+. |+++..+|++||+||||+
T Consensus 97 ~l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~~------~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~ 161 (296)
T 1cr0_A 97 SLKREI-I------ENGKFDQWFDELFGNDTFH-LYDS------FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVS 161 (296)
T ss_dssp HHHHHH-H------HHTHHHHHHHHHHSSSCEE-EECC------CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC----
T ss_pred ccccCC-C------CHHHHHHHHHHHhccCCEE-EECC------CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCC
Confidence 333221 0 1111122233333211221 1111 13589998 66666 999999999999999999
Q ss_pred C---CCH-HHHHHHHHHHHHHHHC-CceEEEEecCc--cH-------------------HHHHhcCEEEEEecC
Q 001400 998 G---LDA-RAAAIVMRTVRNIVNT-GRTIVCTIHQP--SI-------------------DIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 g---LD~-~~~~~i~~~l~~~~~~-g~tvi~~~H~~--~~-------------------~~~~~~d~il~l~~g 1045 (1085)
+ +|. .....+++.|++++++ |.|||+++|+. +. .+...||++++|.+|
T Consensus 162 ~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~ 235 (296)
T 1cr0_A 162 ASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERN 235 (296)
T ss_dssp -------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecC
Confidence 5 555 6778899999999754 99999999995 20 356689999999875
No 149
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.66 E-value=7.7e-16 Score=175.30 Aligned_cols=78 Identities=27% Similarity=0.333 Sum_probs=65.9
Q ss_pred cccccCchhhhh------HHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 302 EMLKGISGGQKK------RLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 302 ~~~~~LSGGqkq------Rvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
..+..||||||| |+++|++++.+|++|+|||||+|||+..+..+++.|+++... +.+ |+.++|+ +++.+.+
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~-~~~-vi~~sH~-~~~~~~~ 320 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHD-EELKDAA 320 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG-SSE-EEEEESC-GGGGGGC
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc-CCE-EEEEECh-HHHHHhC
Confidence 345679999999 677888899999999999999999999999999999987653 444 5556677 5688999
Q ss_pred CeEEEec
Q 001400 376 DDVILLS 382 (1085)
Q Consensus 376 D~ii~L~ 382 (1085)
|++++|.
T Consensus 321 d~~~~l~ 327 (339)
T 3qkt_A 321 DHVIRIS 327 (339)
T ss_dssp SEEEEEE
T ss_pred CEEEEEE
Confidence 9999985
No 150
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.66 E-value=2.3e-16 Score=156.54 Aligned_cols=76 Identities=20% Similarity=0.303 Sum_probs=69.3
Q ss_pred CCCCCHHHHHHHHHH------HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 966 INGLSTEQRKRLTIA------VELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 966 ~~~LS~Gqrqrl~iA------~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+..||||||||++|| |+|+.+|++|||||||+|||+.++..+.+.|+++.+.|.|||++||++. +...+|++
T Consensus 55 ~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~--~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADHV 132 (148)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSEE
T ss_pred hhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH--HHHhCCEE
Confidence 357999999999876 8999999999999999999999999999999998767899999999973 56789999
Q ss_pred EEEe
Q 001400 1040 LFMK 1043 (1085)
Q Consensus 1040 l~l~ 1043 (1085)
++|+
T Consensus 133 i~l~ 136 (148)
T 1f2t_B 133 IRIS 136 (148)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.65 E-value=2.7e-17 Score=183.97 Aligned_cols=186 Identities=15% Similarity=0.068 Sum_probs=110.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-EEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
...+|+++++.+++|++++|+||||||||||++.|+|.+.+. +| .|.|.+.+.......+.+.++.|+.. ++
T Consensus 21 g~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~ 93 (296)
T 1cr0_A 21 GCTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNRVR----LR 93 (296)
T ss_dssp SCTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTTCC----GG
T ss_pred CHHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hh
Confidence 456899999999999999999999999999999999998653 46 55443322110000000011111000 01
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+.+++... . +...+....++.+++..++.. .+ ...
T Consensus 94 ~~~~l~~~--------------~------------------------~~~~~~~~~~~~~l~~~~l~i-~~------~~~ 128 (296)
T 1cr0_A 94 QSDSLKRE--------------I------------------------IENGKFDQWFDELFGNDTFHL-YD------SFA 128 (296)
T ss_dssp GCHHHHHH--------------H------------------------HHHTHHHHHHHHHHSSSCEEE-EC------CCC
T ss_pred hccccccC--------------C------------------------CCHHHHHHHHHHHhccCCEEE-EC------CCC
Confidence 11111100 0 000011112333333222211 11 113
Q ss_pred cCchhh-hhHHHHHHHHhCCCcEeEEeCCCC---C---CCH-HHHHHHHHHHHHHHhccCCEEEEEEecCh--h------
Q 001400 306 GISGGQ-KKRLTTGELLVGPARVLFMDEISN---G---LDS-STTYQIIKYLKHSTRALDGTTVISLLQPA--P------ 369 (1085)
Q Consensus 306 ~LSGGq-kqRvsia~al~~~p~vlllDEpts---g---LD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--~------ 369 (1085)
.+|.+| +||+. |+++..+|+++++||||+ + +|. .....+.+.|+++++..+.++|+ ++|.. .
T Consensus 129 ~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~-vsh~~r~~~~~~~~ 206 (296)
T 1cr0_A 129 EAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVV-ICHLKNPDKGKAHE 206 (296)
T ss_dssp SCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEE-EEECC---------
T ss_pred CCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EEecCccccccccc
Confidence 588888 67777 999999999999999999 5 455 66788999999998766555555 55653 3
Q ss_pred --------------HHHhhcCeEEEecCCeE
Q 001400 370 --------------EAYELFDDVILLSEGQI 386 (1085)
Q Consensus 370 --------------~~~~~~D~ii~L~~G~i 386 (1085)
.+.+.||+|++|++|+.
T Consensus 207 ~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 207 EGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp --------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 67889999999998874
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.65 E-value=2.4e-17 Score=179.01 Aligned_cols=140 Identities=16% Similarity=0.057 Sum_probs=87.1
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
..+.+|+|+|+.+++|++++|+||||||||||+++|+|.++ .+.++ ...+.++|++|++ +++.+|
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-------~~~~~i~~v~~d~-~~~~l~ 74 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-------QRQRKVVILSQDR-FYKVLT 74 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-------GGGCSEEEEEGGG-GBCCCC
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-------ccCCceEEEeCCc-CccccC
Confidence 34579999999999999999999999999999999999873 22222 1245789999996 577899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
+.|++.+.......... + ..+ ...+...|+.+ .+..+.. ..
T Consensus 75 ~~~~~~~~~~~~~~~~~-~----------------~~~---------------~~~~~~~L~~l--~~~~~~~-----~~ 115 (245)
T 2jeo_A 75 AEQKAKALKGQYNFDHP-D----------------AFD---------------NDLMHRTLKNI--VEGKTVE-----VP 115 (245)
T ss_dssp HHHHHHHHTTCCCTTSG-G----------------GBC---------------HHHHHHHHHHH--HTTCCEE-----EC
T ss_pred HhHhhhhhccCCCCCCc-c----------------ccc---------------HHHHHHHHHHH--HCCCCee-----cc
Confidence 99998765332111000 0 000 01122233322 3333333 34
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHH
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNGLDSS 340 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~ 340 (1085)
.+|+||+||+.+ ++++.+|+++++|||...+|..
T Consensus 116 ~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 116 TYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp CEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred cccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 699999999988 5888899999999998888764
No 153
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.65 E-value=2.5e-16 Score=189.55 Aligned_cols=78 Identities=17% Similarity=0.195 Sum_probs=66.9
Q ss_pred ccccC-chhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 303 MLKGI-SGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 303 ~~~~L-SGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
.+..| ||||||||+||++|+.+| ++|+|||||+|||..++..|.+.|+++++ +. +|+.++|... +...+|+++
T Consensus 393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~-~vi~itH~~~-~~~~~d~~~ 468 (517)
T 4ad8_A 393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TR-QVLVVTHLAQ-IAARAHHHY 468 (517)
T ss_dssp BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HS-EEEEECCCHH-HHHHSSEEE
T ss_pred cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CC-EEEEEecCHH-HHHhCCEEE
Confidence 34567 999999999999999999 99999999999999999999999999875 34 4555777755 556799999
Q ss_pred EecCC
Q 001400 380 LLSEG 384 (1085)
Q Consensus 380 ~L~~G 384 (1085)
+|++|
T Consensus 469 ~~~~~ 473 (517)
T 4ad8_A 469 KVEKQ 473 (517)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99655
No 154
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.64 E-value=9.2e-18 Score=214.14 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=113.1
Q ss_pred CCeEEeeeeeEEEeC-------CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC
Q 001400 840 DRLQLLVNVTGAFRP-------GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~-------Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~ 912 (1085)
++..+++||++.+.+ |++++|+|||||||||||++| |... + .++..+||||+..
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~--~----------------~aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA--V----------------MAQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH--H----------------HHTTTCCEESSEE
T ss_pred CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH--H----------------HhheeEEeccCcC
Confidence 345689999999987 999999999999999999999 8543 1 1222238999753
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
.+|+.|++.. +. ++.+.... +.+.+|+|+++ +++|++++.+|+++||
T Consensus 828 ---~l~v~d~I~~----ri--------------------g~~d~~~~-----~~stf~~em~~-~a~al~la~~~sLlLL 874 (1022)
T 2o8b_B 828 ---RLTPIDRVFT----RL--------------------GASDRIMS-----GESTFFVELSE-TASILMHATAHSLVLV 874 (1022)
T ss_dssp ---EECCCSBEEE----EC--------------------C--------------CHHHHHHHH-HHHHHHHCCTTCEEEE
T ss_pred ---CCCHHHHHHH----Hc--------------------CCHHHHhh-----chhhhHHHHHH-HHHHHHhCCCCcEEEE
Confidence 3455554421 11 11110000 12357777765 9999999999999999
Q ss_pred eCCCCCCCHHH-HHHHHHHHHHHHHC-CceEEEEecCccHHHHHhcCEEEEEecCcEEE
Q 001400 993 DEPTSGLDARA-AAIVMRTVRNIVNT-GRTIVCTIHQPSIDIFESFDELLFMKRGGELI 1049 (1085)
Q Consensus 993 DEPtsgLD~~~-~~~i~~~l~~~~~~-g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~ 1049 (1085)
||||+|+|+.. ...++.+++.+.++ |.++|++||+++. ....+|++.++. |++.
T Consensus 875 DEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el-~~~~~d~~~v~~--g~~~ 930 (1022)
T 2o8b_B 875 DELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSL-VEDYSQNVAVRL--GHMA 930 (1022)
T ss_dssp ECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHH-HHHTSSCSSEEE--EEEE
T ss_pred ECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHH-HHHhCCcceeec--CeEE
Confidence 99999999987 46688999999876 9999999999763 556689888874 5666
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=2.7e-17 Score=178.81 Aligned_cols=161 Identities=16% Similarity=0.181 Sum_probs=101.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhh--CC-CCCCeeeeEEEEcCccCChh--cccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLA--GR-KTGGIIEGDIYISGYPKRQE--TFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~--g~-~~~~~~~G~i~i~g~~~~~~--~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
.|++|++++|+||||||||||+++|+ |. .. ..|.+++++...... ...+.+||.+|+....+.+++.++...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 102 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY---GEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSS 102 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH---CCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC----
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhC---CCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccc
Confidence 68999999999999999999999999 55 33 246677776543221 122334555554322222222222111
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC-----
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD----- 1000 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD----- 1000 (1085)
.. . ....+.. .. ....+.++......+..-..+|+++++||||++||
T Consensus 103 ~~------------~-~~~~~~~----------~~-----~~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~ 154 (251)
T 2ehv_A 103 VV------------G-LPSEEKF----------VL-----EDRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEE 154 (251)
T ss_dssp -------------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSG
T ss_pred cc------------c-cccccce----------ec-----cCcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCH
Confidence 00 0 0000000 00 01234555555555555568999999999999998
Q ss_pred HHHHHHHHHHHHHHHHCCceEEEEecCccHHH---------HHhc-CEEEEEe
Q 001400 1001 ARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDI---------FESF-DELLFMK 1043 (1085)
Q Consensus 1001 ~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~---------~~~~-d~il~l~ 1043 (1085)
+..+..+.++++.+++.|+|||++||+++. . ...| |++++|+
T Consensus 155 ~~~~~~l~~l~~~l~~~g~tii~vtH~~~~-~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 155 RKIREVLLKLNTILLEMGVTTILTTEAPDP-QHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp GGHHHHHHHHHHHHHHHCCEEEEEECCC-----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEECCCCC-CcccccccChhhEeeeEEEEEe
Confidence 777777999999988789999999999763 4 4677 9999996
No 156
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.63 E-value=4.5e-17 Score=177.93 Aligned_cols=131 Identities=16% Similarity=0.264 Sum_probs=94.0
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
.+|+++| +++|++++|+||||||||||+++|+|... +. +|+|.++|.++. |++|....+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~--~~~~G~I~~~g~~i~---------~~~~~~~~~------- 74 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE---------YVFKHKKSI------- 74 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH--HHCCCEEEEEESSCC---------SCCCCSSSE-------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC--CCCCCEEEEcCCcce---------eecCCccee-------
Confidence 3678998 99999999999999999999999999754 34 799999987642 333321100
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
.. . +.+++.. ..| |++||++|..+|++|++|||| |+
T Consensus 75 -------v~---q--------------~~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~ 110 (261)
T 2eyu_A 75 -------VN---Q--------------REVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DL 110 (261)
T ss_dssp -------EE---E--------------EEBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SH
T ss_pred -------ee---H--------------HHhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CH
Confidence 00 0 0111110 123 899999999999999999999 98
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
++...+ ++. +..|.+|++|+|+.+ ....+|+++.|.
T Consensus 111 ~~~~~~---l~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~ 146 (261)
T 2eyu_A 111 ETVETA---LRA-AETGHLVFGTLHTNT--AIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHH---HHH-HHTTCEEEEEECCSS--HHHHHHHHHHTS
T ss_pred HHHHHH---HHH-HccCCEEEEEeCcch--HHHHHHHHhhhc
Confidence 886544 443 357999999999976 456677765553
No 157
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.62 E-value=3.9e-18 Score=191.04 Aligned_cols=158 Identities=12% Similarity=0.030 Sum_probs=108.7
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~ 931 (1085)
+++|+++||+|+||||||||+++|+|...+ ..| . +.++|++|++.+++. |++||+.+... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~--~~G------~--------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~- 147 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLAR--WDH------H--------PRVDLVTTDGFLYPN-AELQRRNLMHR-K- 147 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHT--STT------C--------CCEEEEEGGGGBCCH-HHHHHTTCTTC-T-
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccc--cCC------C--------CeEEEEecCccCCcc-cHHHHHHHHHh-c-
Confidence 789999999999999999999999996542 112 1 357999999988888 99999864221 1
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 001400 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTV 1011 (1085)
Q Consensus 932 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l 1011 (1085)
........+.+.++++.++ .+..+... ..||+||+||+++|++++.+|+|||||||++.+|+.. ..+
T Consensus 148 --g~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l 214 (312)
T 3aez_A 148 --GFPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMV 214 (312)
T ss_dssp --TSGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCG
T ss_pred --CCChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHH
Confidence 1111122344567777776 43332222 3699999999999999999999999999999998521 112
Q ss_pred HHHHHCCceEEEEecCccHHHHHhcCEEEEEec
Q 001400 1012 RNIVNTGRTIVCTIHQPSIDIFESFDELLFMKR 1044 (1085)
Q Consensus 1012 ~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~ 1044 (1085)
.++ -+ .+|+++|+.+.......+|.+.+.+
T Consensus 215 ~~~--~D-~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 215 SDL--FD-FSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp GGG--CS-EEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HHh--cC-cEEEEECCHHHHHHHHHHHHHHHHh
Confidence 222 13 3466677655433344556555543
No 158
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.62 E-value=2.8e-17 Score=178.58 Aligned_cols=155 Identities=10% Similarity=-0.008 Sum_probs=97.0
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
++..+|+||||++++|+++||+||||||||||+++|+|.. |.+.++ ..++.++|++|++ +++.+|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l------G~~~~~-------~~~~~i~~v~~d~-~~~~l~~ 75 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL------GQNEVE-------QRQRKVVILSQDR-FYKVLTA 75 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH------TGGGSC-------GGGCSEEEEEGGG-GBCCCCH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh------chhccc-------ccCCceEEEeCCc-CccccCH
Confidence 4567999999999999999999999999999999999843 222222 2356789999985 6678899
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCC
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGL 999 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgL 999 (1085)
.+++.+......... ......+.+.+.++.+ .+..+.. +..||+||+||+.+ ++++.+|+++|||||....
T Consensus 76 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~-----~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~ 146 (245)
T 2jeo_A 76 EQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVE-----VPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFY 146 (245)
T ss_dssp HHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEE-----ECCEETTTTEECSS-CEEECCCSEEEEECTTTTT
T ss_pred hHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCee-----cccccccccCccCc-eEEecCCCEEEEeCccccc
Confidence 999876432211111 1111112233444432 2222222 24699999999988 5888899999999999888
Q ss_pred CHHHHHHHHHHHHHHHHCCceEEEEecC
Q 001400 1000 DARAAAIVMRTVRNIVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 1000 D~~~~~~i~~~l~~~~~~g~tvi~~~H~ 1027 (1085)
|.. +.++ .+.+|++++|+
T Consensus 147 ~~~--------l~~~--~~~~i~v~th~ 164 (245)
T 2jeo_A 147 SQE--------IRDM--FHLRLFVDTDS 164 (245)
T ss_dssp SHH--------HHTT--CSEEEEEECCH
T ss_pred cHH--------HHHh--cCeEEEEECCH
Confidence 864 2222 37899999997
No 159
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=6.8e-16 Score=194.50 Aligned_cols=148 Identities=15% Similarity=0.080 Sum_probs=103.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh--------CCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA--------GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI 912 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~--------g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~ 912 (1085)
...+++|+++.+.+|++++|+|||||||||||++++ |..- +..+. .++.+ +.
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v--pa~~~---------------~~~~~---d~ 707 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV--PCESA---------------EVSIV---DC 707 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB--SEEEE---------------EEECC---SE
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc--ccccc---------------cchHH---HH
Confidence 456899999999999999999999999999999994 3211 01110 01100 00
Q ss_pred CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEE
Q 001400 913 HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIV 990 (1085)
Q Consensus 913 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~il 990 (1085)
.+ ..+++. +.. ..++|++++++..+|++| +.+|+++
T Consensus 708 i~----------------------------------~~ig~~---d~l-----~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 708 IL----------------------------------ARVGAG---DSQ-----LKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp EE----------------------------------EECC-----------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred HH----------------------------------HhcCch---hhH-----HHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 00 001111 111 135788888888888888 9999999
Q ss_pred EEeCCCCCCCHHHHHHH-HHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecC
Q 001400 991 FMDEPTSGLDARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGP 1053 (1085)
Q Consensus 991 llDEPtsgLD~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~ 1053 (1085)
||||||+|+|+.....+ +.+++.+.+ .|.|+|++||+.+ +.+.+|++..+.+ |++.+.++
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~n-g~v~~~~~ 807 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNN-LHVTALTT 807 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEE-EEEEEEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEe-eEEEEEec
Confidence 99999999999988777 777787776 4999999999964 5678899888875 56665443
No 160
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.60 E-value=4e-17 Score=185.28 Aligned_cols=186 Identities=12% Similarity=0.113 Sum_probs=126.9
Q ss_pred cccccccccC-CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh----------hc
Q 001400 831 ELKQEGVLED-RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ----------ET 899 (1085)
Q Consensus 831 ~~~~~~~~~~-~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~----------~~ 899 (1085)
+.++..+.++ +..+|+++ +.|.+|+++||+|+||||||||+++|+|... +..|.|.+.|.+... ..
T Consensus 47 ~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~--~~~g~i~~~G~~~~ev~~~i~~~~~~~ 123 (347)
T 2obl_A 47 LRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS--ADIIVLALIGERGREVNEFLALLPQST 123 (347)
T ss_dssp TCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC--CSEEEEEEESCCHHHHHHHHTTSCHHH
T ss_pred eecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC--CCEEEEEEecccHHHHHHHHHhhhhhh
Confidence 3444444444 56789999 9999999999999999999999999999766 347899888864211 12
Q ss_pred ccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHH
Q 001400 900 FARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTI 979 (1085)
Q Consensus 900 ~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~i 979 (1085)
+.+.+.++.|.+. ...+.+.-.. ....+.+.....+ .+..... ..+..||+|| ||+++
T Consensus 124 ~~~~v~~~~~~~~-----~~~~r~~~~~------------~~~~~ae~~~~~~-~~vl~~l---d~~~~lS~g~-r~v~l 181 (347)
T 2obl_A 124 LSKCVLVVTTSDR-----PALERMKAAF------------TATTIAEYFRDQG-KNVLLMM---DSVTRYARAA-RDVGL 181 (347)
T ss_dssp HTTEEEEEECTTS-----CHHHHHHHHH------------HHHHHHHHHHTTT-CEEEEEE---ETHHHHHHHH-HHHHH
T ss_pred hhceEEEEECCCC-----CHHHHHHHHH------------HHHHHHHHHHhcc-ccHHHHH---hhHHHHHHHH-HHHHH
Confidence 3456778877532 2222221100 0000111111001 0000000 1124699999 89999
Q ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCc-----eEEEEecCccHHHHHhcCEEEEEecCcEEEEec
Q 001400 980 AVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGR-----TIVCTIHQPSIDIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 980 A~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~--~g~-----tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
| +.+|++ |+|||+.....+.++++++.+ .|. ||++++||++ ...||+++++.+ |+++..+
T Consensus 182 a---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v~~i~d-G~Ivl~~ 248 (347)
T 2obl_A 182 A---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEVRSILD-GHIVLTR 248 (347)
T ss_dssp H---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHHHHHCS-EEEEBCH
T ss_pred H---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---ChhhhheEEeeC-cEEEEeC
Confidence 9 688887 999999999999999999864 477 9999999987 346899999974 7999887
Q ss_pred CC
Q 001400 1053 PL 1054 (1085)
Q Consensus 1053 ~~ 1054 (1085)
++
T Consensus 249 ~l 250 (347)
T 2obl_A 249 EL 250 (347)
T ss_dssp HH
T ss_pred CH
Confidence 64
No 161
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.60 E-value=1.2e-15 Score=183.97 Aligned_cols=155 Identities=14% Similarity=0.102 Sum_probs=111.7
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhh
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAG 234 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~ 234 (1085)
++.+++|++++|+||||||||||++.++|...+ .|+ +.+.|++|++. .++.++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~----~G~--------------~vi~~~~ee~~----~~l~~~~~--- 329 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACA----NKE--------------RAILFAYEESR----AQLLRNAY--- 329 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHT----TTC--------------CEEEEESSSCH----HHHHHHHH---
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHh----CCC--------------CEEEEEEeCCH----HHHHHHHH---
Confidence 669999999999999999999999999998765 232 12455566542 12222211
Q ss_pred hhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhH
Q 001400 235 QCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKR 314 (1085)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR 314 (1085)
++ +. + ++. +...|+....+.. ...|||||+||
T Consensus 330 ~~--------------------g~----~------------------~~~-~~~~g~~~~~~~~-----p~~LS~g~~q~ 361 (525)
T 1tf7_A 330 SW--------------------GM----D------------------FEE-MERQNLLKIVCAY-----PESAGLEDHLQ 361 (525)
T ss_dssp TT--------------------SC----C------------------HHH-HHHTTSEEECCCC-----GGGSCHHHHHH
T ss_pred Hc--------------------CC----C------------------HHH-HHhCCCEEEEEec-----cccCCHHHHHH
Confidence 00 00 0 111 1234554444432 35699999999
Q ss_pred HHHHHHHhCCCcEeEEeCCCCCCCHH-----HHHHHHHHHHHHHhccCCEEEEEEecCh----------hHHHhhcCeEE
Q 001400 315 LTTGELLVGPARVLFMDEISNGLDSS-----TTYQIIKYLKHSTRALDGTTVISLLQPA----------PEAYELFDDVI 379 (1085)
Q Consensus 315 vsia~al~~~p~vlllDEptsgLD~~-----~~~~i~~~l~~~~~~~~~t~ii~~~q~~----------~~~~~~~D~ii 379 (1085)
+.+|+++..+|+++++| ||+|||.. .+..+.+.++.+.+ .+.|+++ +.|.. ..+..++|+|+
T Consensus 362 ~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-~g~tvil-vsh~~~~~~~~~~~~~~l~~~~D~vi 438 (525)
T 1tf7_A 362 IIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-EEITGLF-TNTSDQFMGAHSITDSHISTITDTII 438 (525)
T ss_dssp HHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH-TTCEEEE-EEECSSSSCCCSSCSSCCTTTCSEEE
T ss_pred HHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh-CCCEEEE-EECcccccCcccccCcccceeeeEEE
Confidence 99999999999999999 99999999 99999999988765 3555555 55555 66778999999
Q ss_pred EecCCe
Q 001400 380 LLSEGQ 385 (1085)
Q Consensus 380 ~L~~G~ 385 (1085)
+|++|+
T Consensus 439 ~L~~ge 444 (525)
T 1tf7_A 439 LLQYVE 444 (525)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999886
No 162
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.59 E-value=1.3e-15 Score=191.92 Aligned_cols=89 Identities=12% Similarity=0.156 Sum_probs=70.3
Q ss_pred ccCchhhhhHHHHHHHH--hCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEe
Q 001400 305 KGISGGQKKRLTTGELL--VGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILL 381 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al--~~~p~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L 381 (1085)
+++|+|+++++.+|+++ +.+|++++|||||+|||+.....+ +..++.+.+..+.++ +.++|+ .++..++|++..+
T Consensus 720 ~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~v-l~aTH~-~el~~lad~~~~v 797 (934)
T 3thx_A 720 KGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFC-MFATHF-HELTALANQIPTV 797 (934)
T ss_dssp ---CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEE-EEEESC-GGGGGGGGTCTTE
T ss_pred HhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEE-EEEcCc-HHHHHHhccccee
Confidence 46888888888888888 999999999999999999999888 566676665334454 446676 5677899999999
Q ss_pred cCCeEEEecChhhH
Q 001400 382 SEGQIVYQGPRVSV 395 (1085)
Q Consensus 382 ~~G~iv~~G~~~~~ 395 (1085)
.+|++.+.++.+++
T Consensus 798 ~ng~v~~~~~~~~l 811 (934)
T 3thx_A 798 NNLHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEEEETTEE
T ss_pred EeeEEEEEecCCcE
Confidence 99999998876554
No 163
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.58 E-value=2.6e-16 Score=178.64 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=124.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC----------CCCceEEEEccC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF----------VPPRTSAYVSQQ 217 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~----------~~~~~~~yv~Q~ 217 (1085)
..+|+++ +.|.+|++++|+||||||||||+++|+|...++ .|.|.+.|++..+. ..++.+.+++|.
T Consensus 59 ~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~---~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 59 VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASAD---IIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCS---EEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCC---EEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 4699999 999999999999999999999999999998876 89999988642110 123567788775
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+. ...+.+.-.... ..++ + .....| .|.
T Consensus 135 ~~-----~~~~r~~~~~~~----------~~~a--e-------------------------------~~~~~~----~~v 162 (347)
T 2obl_A 135 DR-----PALERMKAAFTA----------TTIA--E-------------------------------YFRDQG----KNV 162 (347)
T ss_dssp TS-----CHHHHHHHHHHH----------HHHH--H-------------------------------HHHTTT----CEE
T ss_pred CC-----CHHHHHHHHHHH----------HHHH--H-------------------------------HHHhcc----ccH
Confidence 42 222222111000 0000 0 000001 010
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCE-----EEEEEecChhHHH
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGT-----TVISLLQPAPEAY 372 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t-----~ii~~~q~~~~~~ 372 (1085)
.+--+.+..+|+|| |||++| +++|++ |+|||+.....+.+.++++.+..+++ +|++.+|+.. .
T Consensus 163 l~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~ 230 (347)
T 2obl_A 163 LLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--D 230 (347)
T ss_dssp EEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--C
T ss_pred HHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--C
Confidence 00001245699999 899999 678877 99999999999999998875312355 5666778776 6
Q ss_pred hhcCeEEEecCCeEEEecChhhH
Q 001400 373 ELFDDVILLSEGQIVYQGPRVSV 395 (1085)
Q Consensus 373 ~~~D~ii~L~~G~iv~~G~~~~~ 395 (1085)
.++|+++++.+|+++..|+..+.
T Consensus 231 ~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 231 PIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHHHHHHHCSEEEEBCHHHHTT
T ss_pred hhhhheEEeeCcEEEEeCCHHHc
Confidence 78999999999999999987654
No 164
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.58 E-value=1.7e-16 Score=170.16 Aligned_cols=152 Identities=19% Similarity=0.224 Sum_probs=93.1
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCC--CCC---CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+.|++|++++|+||||||||||+++|+|. .++ +...+.+++++..... .+.+++++|...+.+. |+.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~---~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR---PERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC---HHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC---HHHHHHHHHHcCCCHH-HHhhcEE
Confidence 36899999999999999999999999983 221 1123577777653210 1112233333222221 2333221
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHhc-------CCCEEEEeCCC
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELVA-------NPSIVFMDEPT 996 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~~-------~p~illlDEPt 996 (1085)
+. ...+. .+++.+..+.+++. +|++|++||||
T Consensus 96 ~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 135 (231)
T 4a74_A 96 VA----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 135 (231)
T ss_dssp EE----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSS
T ss_pred EE----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChH
Confidence 11 01222 33334555555555 89999999999
Q ss_pred CCCCHH-------H-----HHHHHHHHHHHHH-CCceEEEEecCccH---HHHHhcCEEEEEecC
Q 001400 997 SGLDAR-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSI---DIFESFDELLFMKRG 1045 (1085)
Q Consensus 997 sgLD~~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~---~~~~~~d~il~l~~g 1045 (1085)
+++|+. . ...+++.|+++++ .|.|||+++|..+. .+...+|++++|++|
T Consensus 136 ~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 136 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 999984 2 2367777777764 49999999994431 255678999999864
No 165
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.57 E-value=6.8e-16 Score=193.85 Aligned_cols=138 Identities=14% Similarity=0.130 Sum_probs=93.8
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|||+++++|++++|+|||||||||||+++++..... .. |...... ...++++ +.++..+.+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a-q~------g~~vpa~--~~~i~~~---d~i~~~ig~~ 726 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA-QI------GSYVPAE--EATIGIV---DGIFTRMGAA 726 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH-HH------TCCBSSS--EEEEECC---SEEEEEC---
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh-hc------Cccccch--hhhhhHH---HHHHHhCChH
Confidence 456899999999999999999999999999999997631100 00 1000000 0011111 1111111111
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
+++ .. +.+.+|+|++|++.|+++ +.+|+++||||||+|||
T Consensus 727 d~l----------------------------------~~-----~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD 766 (918)
T 3thx_B 727 DNI----------------------------------YK-----GRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTS 766 (918)
T ss_dssp ----------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSC
T ss_pred HHH----------------------------------HH-----hHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCC
Confidence 111 00 124689999999999999 89999999999999999
Q ss_pred HHHHHHHH-HHHHHHHH-CCceEEEEecCccH
Q 001400 1001 ARAAAIVM-RTVRNIVN-TGRTIVCTIHQPSI 1030 (1085)
Q Consensus 1001 ~~~~~~i~-~~l~~~~~-~g~tvi~~~H~~~~ 1030 (1085)
+.....+. .+++.+.+ .|.|||++||+++.
T Consensus 767 ~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el 798 (918)
T 3thx_B 767 THDGIAIAYATLEYFIRDVKSLTLFVTHYPPV 798 (918)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCEEEEECSCGGG
T ss_pred HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHH
Confidence 99888886 77777765 59999999999753
No 166
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.56 E-value=5.3e-16 Score=192.27 Aligned_cols=129 Identities=21% Similarity=0.143 Sum_probs=95.2
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|+|++ |++++|+|||||||||||++|+|.... ...|.+. + ..+..+|+++| +++.+++.
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~-~~~G~~v----p----a~~~~i~~v~~---i~~~~~~~ 629 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL-AQVGSFV----P----AEEAHLPLFDG---IYTRIGAS 629 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH-HTTTCCB----S----SSEEEECCCSE---EEEECCC-
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh-cccCcee----e----hhccceeeHHH---hhccCCHH
Confidence 45789999999 999999999999999999999995310 0123321 1 11234677665 33444444
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH--hcCCCEEEEeCC---
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL--VANPSIVFMDEP--- 995 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL--~~~p~illlDEP--- 995 (1085)
|++. .++|+|+++++.+|+++ +.+|+++|||||
T Consensus 630 d~l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrG 667 (765)
T 1ewq_A 630 DDLA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRG 667 (765)
T ss_dssp -----------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTT
T ss_pred HHHH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCC
Confidence 4331 14799999999999999 999999999999
Q ss_pred CCCCCHHHH-HHHHHHHHHHHHCCceEEEEecCcc
Q 001400 996 TSGLDARAA-AIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 996 tsgLD~~~~-~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
|++||+.+. ..+.+.+.+ .|.|+|++||+.+
T Consensus 668 Ts~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 668 TSSLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp SCHHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CCCcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 999999875 467777765 5899999999964
No 167
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.55 E-value=5e-16 Score=166.45 Aligned_cols=154 Identities=18% Similarity=0.156 Sum_probs=92.8
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCC----ceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHL----QVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~----~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
+-+++|++++|+||||||||||+++|+|.+.+.. ...|.|.+++.+. ...+.+++++|...+.+. ||.||+.
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~---~~~~~i~~~~~~~~~~~~-~~~~~~~ 95 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD-EVLKHIY 95 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC---CCHHHHHHHHHHTTSCHH-HHHHTEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC---CCHHHHHHHHHHcCCCHH-HHhhcEE
Confidence 5799999999999999999999999999654420 1234666665321 011223344443332222 3333332
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh-
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG- 310 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG- 310 (1085)
+. ...+++
T Consensus 96 ~~-----------------------------------------------------------------------~~~~~~~ 104 (231)
T 4a74_A 96 VA-----------------------------------------------------------------------RAFNSNH 104 (231)
T ss_dssp EE-----------------------------------------------------------------------ECCSHHH
T ss_pred EE-----------------------------------------------------------------------ecCChHH
Confidence 21 112222
Q ss_pred hhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhccCCEEEEEEecChh--
Q 001400 311 QKKRLTTGELLV-------GPARVLFMDEISNGLDSS-------T-----TYQIIKYLKHSTRALDGTTVISLLQPAP-- 369 (1085)
Q Consensus 311 qkqRvsia~al~-------~~p~vlllDEptsgLD~~-------~-----~~~i~~~l~~~~~~~~~t~ii~~~q~~~-- 369 (1085)
+++.+..+++++ .+|+++++||||++||+. . ..++++.|+++++..+ .+|+.++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g-~tvi~vtH~~~~~ 183 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVTNQVQANG 183 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHT-CEEEEEEECC---
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCC-CeEEEEeecccCc
Confidence 222244444443 489999999999999983 1 2367888888776554 45555777444
Q ss_pred --HHHhhcCeEEEecCCe
Q 001400 370 --EAYELFDDVILLSEGQ 385 (1085)
Q Consensus 370 --~~~~~~D~ii~L~~G~ 385 (1085)
.+...+|+++.|++|+
T Consensus 184 g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 184 GHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ------CCSEEEEEEECT
T ss_pred chhhHhhceEEEEEEecC
Confidence 4888999999998753
No 168
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.55 E-value=1.9e-16 Score=177.03 Aligned_cols=160 Identities=14% Similarity=0.042 Sum_probs=84.5
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC-CCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR-KTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSP 915 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~-~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~ 915 (1085)
+.++++.++++++|+| +|+|+||||||||++.|+|. .. +.+| +.++|.+.......+.++|++|.+....
T Consensus 6 ~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~--~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~ 76 (301)
T 2qnr_A 6 NQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY--PERV-ISGAAEKIERTVQIEASTVEIEERGVKL 76 (301)
T ss_dssp ------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEEEC---CCE
T ss_pred ceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc--CCCC-cccCCcccCCcceEeeEEEEecCCCccc
Confidence 3456678999999998 99999999999999999996 43 3467 8777766543222355789999888777
Q ss_pred CCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Q 001400 916 GLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP 995 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP 995 (1085)
.+|+.|+..++.... .. +.....++.+.+. .+... .++|+|||||+.+||+++ +|++|||
T Consensus 77 ~ltv~Dt~g~~~~~~-~~----e~~~~l~~~l~~~------~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldeP 136 (301)
T 2qnr_A 77 RLTVVDTPGYGDAIN-CR----DCFKTIISYIDEQ------FERYL-----HDESGLNRRHIIDNRVHC----CFYFISP 136 (301)
T ss_dssp EEEEEEEC----------------CTTHHHHHHHH------HHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECS
T ss_pred CcchhhhhhhhhhcC-cH----HHHHHHHHHHHHH------HHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecC
Confidence 888888876643221 00 0000111111111 11222 369999999999998885 9999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHC-CceEEEEecCcc
Q 001400 996 TSG-LDARAAAIVMRTVRNIVNT-GRTIVCTIHQPS 1029 (1085)
Q Consensus 996 tsg-LD~~~~~~i~~~l~~~~~~-g~tvi~~~H~~~ 1029 (1085)
|++ ||+... +.++++.+. +.++|++.||+.
T Consensus 137 t~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 137 FGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp SSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred cccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 985 999873 556665443 789999999964
No 169
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.55 E-value=7.9e-16 Score=196.42 Aligned_cols=159 Identities=14% Similarity=0.084 Sum_probs=111.7
Q ss_pred eeecccceeeEeC-------CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEE-EEccCCC
Q 001400 148 LTILDDLSGIIRP-------SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSA-YVSQQDW 219 (1085)
Q Consensus 148 ~~iL~~vs~~i~~-------G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~-yv~Q~d~ 219 (1085)
..+++|+++.+++ |++++|+|||||||||||+++ |.+... ..+| ||||+..
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------------------aqiG~~Vpq~~~ 827 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------------------AQMGCYVPAEVC 827 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH--------------------HTTTCCEESSEE
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH--------------------hheeEEeccCcC
Confidence 4689999999987 999999999999999999999 987421 1234 9999763
Q ss_pred CCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccc
Q 001400 220 QVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLV 299 (1085)
Q Consensus 220 ~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~v 299 (1085)
.+||.|+|.. + +|+.+...
T Consensus 828 ---~l~v~d~I~~--r-----------------------------------------------------ig~~d~~~--- 846 (1022)
T 2o8b_B 828 ---RLTPIDRVFT--R-----------------------------------------------------LGASDRIM--- 846 (1022)
T ss_dssp ---EECCCSBEEE--E-----------------------------------------------------CC---------
T ss_pred ---CCCHHHHHHH--H-----------------------------------------------------cCCHHHHh---
Confidence 4566555411 0 01110000
Q ss_pred cCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHH-HHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 300 GDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 300 g~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
.....+|++++ ++++|++++.+|++++||||++|+|+... ..++..|+.+.+..+ .+++.++|+.+.+..++|++
T Consensus 847 --~~~stf~~em~-~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g-~~vl~~TH~~el~~~~~d~~ 922 (1022)
T 2o8b_B 847 --SGESTFFVELS-ETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIK-CRTLFSTHYHSLVEDYSQNV 922 (1022)
T ss_dssp -----CHHHHHHH-HHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSC-CEEEEECCCHHHHHHTSSCS
T ss_pred --hchhhhHHHHH-HHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCC-CEEEEEeCCHHHHHHhCCcc
Confidence 01234677666 49999999999999999999999999885 446788888865434 45556788888888899999
Q ss_pred EEecCCeEE--EecChh
Q 001400 379 ILLSEGQIV--YQGPRV 393 (1085)
Q Consensus 379 i~L~~G~iv--~~G~~~ 393 (1085)
.++ +|++. +.|+.+
T Consensus 923 ~v~-~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 923 AVR-LGHMACMVENECE 938 (1022)
T ss_dssp SEE-EEEEEEC------
T ss_pred eee-cCeEEEEEecCcc
Confidence 887 58887 455543
No 170
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.55 E-value=9.2e-17 Score=170.16 Aligned_cols=144 Identities=14% Similarity=0.095 Sum_probs=105.2
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCC--CCCCHHHHHHHhhh
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQV--AEMTVRETLDFAGQ 235 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~--~~lTV~E~l~f~~~ 235 (1085)
.++|++++|+||||||||||+++|+|.+++ .++|++|++.++ ..+|+++++.+...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999998753 479999998766 56899988765321
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh----
Q 001400 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ---- 311 (1085)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq---- 311 (1085)
.. . . .....+.++++.+++.+..+.. ...+|+||
T Consensus 61 ~~--~-~----------------------------------~~~~~~~~~l~~~~~~~~~~~~-----~~~~s~g~~~~~ 98 (211)
T 3asz_A 61 HP--D-A----------------------------------FDLALYLEHAQALLRGLPVEMP-----VYDFRAYTRSPR 98 (211)
T ss_dssp SG--G-G----------------------------------BCHHHHHHHHHHHHTTCCEEEC-----CEETTTTEECSS
T ss_pred Ch--h-h----------------------------------hhHHHHHHHHHHHHcCCCcCCC-----cccCcccCCCCC
Confidence 00 0 0 0011245566777776554433 34589986
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCC-------CCHHHHHHHHHHHHHHHhccCCEEEEEEe
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNG-------LDSSTTYQIIKYLKHSTRALDGTTVISLL 365 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsg-------LD~~~~~~i~~~l~~~~~~~~~t~ii~~~ 365 (1085)
+||+++|++++.+|+++++||||++ ||+....++.+.+++.....+.+++.+.|
T Consensus 99 ~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~ 159 (211)
T 3asz_A 99 RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVA 159 (211)
T ss_dssp CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 4789999999999999999999999 99999999999888764333445444333
No 171
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.53 E-value=3.1e-15 Score=163.38 Aligned_cols=133 Identities=20% Similarity=0.232 Sum_probs=93.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
++|+++| +++|++++|+|||||||||||++|+|.+++. .+|+|.++|.++... .+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~--~~G~I~~~g~~i~~~-~~~~~~~v~q~----------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIEYV-FKHKKSIVNQR----------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHH--CCCEEEEEESSCCSC-CCCSSSEEEEE-----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCC--CCCEEEEcCCcceee-cCCcceeeeHH-----------
Confidence 4899999 9999999999999999999999999998642 279999998764211 11111111110
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
.+|++. ..+
T Consensus 79 -----------------------------------------------------------~~gl~~-----------~~l- 87 (261)
T 2eyu_A 79 -----------------------------------------------------------EVGEDT-----------KSF- 87 (261)
T ss_dssp -----------------------------------------------------------EBTTTB-----------SCH-
T ss_pred -----------------------------------------------------------HhCCCH-----------HHH-
Confidence 011110 112
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
|++||++|..+|+++++|||| |..+...+++ . +. .+.+ |++++|... +...+|+++.|..
T Consensus 88 -----~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~-~~-~g~~-vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 -----ADALRAALREDPDVIFVGEMR---DLETVETALR---A-AE-TGHL-VFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -----HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---H-HH-TTCE-EEEEECCSS-HHHHHHHHHHTSC
T ss_pred -----HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---H-Hc-cCCE-EEEEeCcch-HHHHHHHHhhhcC
Confidence 899999999999999999999 9888665443 2 22 3445 455556654 6788999988864
No 172
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.53 E-value=1.8e-14 Score=142.84 Aligned_cols=83 Identities=24% Similarity=0.311 Sum_probs=69.1
Q ss_pred CcccccCchhhhhHHHHH------HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 301 DEMLKGISGGQKKRLTTG------ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 301 ~~~~~~LSGGqkqRvsia------~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
+..+..||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.++++.+. +.+ |+.++|+. ++...
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~-~~t-iiivsH~~-~~~~~ 128 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQ-VILVSHDE-ELKDA 128 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG-SSE-EEEEESCG-GGGGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc-CCE-EEEEEChH-HHHHh
Confidence 345678999999999876 8999999999999999999999999999999987653 445 55566776 67889
Q ss_pred cCeEEEe--cCCeE
Q 001400 375 FDDVILL--SEGQI 386 (1085)
Q Consensus 375 ~D~ii~L--~~G~i 386 (1085)
+|++++| .+|..
T Consensus 129 ~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 129 ADHVIRISLENGSS 142 (148)
T ss_dssp CSEEEEEEEETTEE
T ss_pred CCEEEEEEcCCCeE
Confidence 9999999 45643
No 173
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.52 E-value=5.2e-16 Score=172.99 Aligned_cols=148 Identities=15% Similarity=0.098 Sum_probs=101.2
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cc--cceEEEEccCCCCCCCCCHHHHHH
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TF--ARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~--~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+|++++|+||||||||||+++|+|... +..|+|.+.|.+.... .+ ++.++|++|++...|..+++|++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~--~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ--NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH--TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH--hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHH
Confidence 699999999999999999999999755 3479999999875321 11 345899999998888889999987
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
+... +.. + ..+++..++.+..+ ..++..++||++||||++.+|+.++| .||+.+.
T Consensus 179 ~~~~-~~~-d----------~~llDt~G~~~~~~--------~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~ 233 (304)
T 1rj9_A 179 AMKA-RGY-D----------LLFVDTAGRLHTKH--------NLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTG 233 (304)
T ss_dssp HHHH-HTC-S----------EEEECCCCCCTTCH--------HHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBC
T ss_pred HHHh-CCC-C----------EEEecCCCCCCchH--------HHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHH
Confidence 5421 100 0 00111122221111 12455668999999999999994333 3444444
Q ss_pred HHHHHHHHHHHHC-CceEEEEecCc
Q 001400 1005 AIVMRTVRNIVNT-GRTIVCTIHQP 1028 (1085)
Q Consensus 1005 ~~i~~~l~~~~~~-g~tvi~~~H~~ 1028 (1085)
..+++.++++.+. |.|+|++||+.
T Consensus 234 ~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 234 QNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp THHHHHHHHHHHHHCCSEEEEECTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEECCc
Confidence 4566666766544 89999999974
No 174
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.52 E-value=1.1e-15 Score=166.03 Aligned_cols=71 Identities=17% Similarity=0.071 Sum_probs=49.7
Q ss_pred hhhhHHHHHHHHhCCCcEeEEeCCCCCCC-----HHHHHHHHHHHHHHHhccCCEEEEEEecChhHH---------Hhhc
Q 001400 310 GQKKRLTTGELLVGPARVLFMDEISNGLD-----SSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA---------YELF 375 (1085)
Q Consensus 310 GqkqRvsia~al~~~p~vlllDEptsgLD-----~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~---------~~~~ 375 (1085)
++..+...+..-..+|+++++||||++|| ...+..+.+.++.+.+ .+. +|+.++|...++ ..++
T Consensus 121 ~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~-~g~-tii~vtH~~~~~~~~~~~~~i~~~~ 198 (251)
T 2ehv_A 121 DNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLE-MGV-TTILTTEAPDPQHGKLSRYGIEEFI 198 (251)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHH-HCC-EEEEEECCC----CCSSSSSCGGGG
T ss_pred HHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHH-CCC-eEEEEECCCCCCcccccccChhhEe
Confidence 34333344444457999999999999998 6777778888888765 344 455577877777 6788
Q ss_pred -CeEEEec
Q 001400 376 -DDVILLS 382 (1085)
Q Consensus 376 -D~ii~L~ 382 (1085)
|+|++|+
T Consensus 199 aD~vi~l~ 206 (251)
T 2ehv_A 199 ARGVIVLD 206 (251)
T ss_dssp CSEEEEEE
T ss_pred eeEEEEEe
Confidence 9999995
No 175
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.52 E-value=4.2e-17 Score=172.77 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=109.1
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC--CCCCHHHHHHHhhhh
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS--PGLTVLESLLFSAWL 929 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~--~~~tv~e~l~~~~~~ 929 (1085)
.++|+++||+|+||||||||+++|+|...+ .++|++|++.++ ..+|+.+++.+..
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~-- 59 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRVNY-- 59 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCCCC--
Confidence 468999999999999999999999985431 368999987765 5678988875431
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHH----HHHHHHHHHHhcCCCEEEEeCCCCC-------
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQ----RKRLTIAVELVANPSIVFMDEPTSG------- 998 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gq----rqrl~iA~aL~~~p~illlDEPtsg------- 998 (1085)
..+... ..+.+.++++.+++.+..+. | ...+|+|| +||+++|++++.+|.++++||||++
T Consensus 60 ~~~~~~----~~~~~~~~l~~~~~~~~~~~----~-~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ 130 (211)
T 3asz_A 60 DHPDAF----DLALYLEHAQALLRGLPVEM----P-VYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVF 130 (211)
T ss_dssp TSGGGB----CHHHHHHHHHHHHTTCCEEE----C-CEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEE
T ss_pred CChhhh----hHHHHHHHHHHHHcCCCcCC----C-cccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEE
Confidence 111111 12345666777766554333 2 24689996 4788999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH-HHCCceEEEEecCc
Q 001400 999 LDARAAAIVMRTVRNI-VNTGRTIVCTIHQP 1028 (1085)
Q Consensus 999 LD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~ 1028 (1085)
||+.....+.+.+++. .+.|+|++.++|+.
T Consensus 131 ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 131 VDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999875 45699999999974
No 176
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.52 E-value=1.3e-16 Score=165.55 Aligned_cols=159 Identities=19% Similarity=0.224 Sum_probs=105.4
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGV 239 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~ 239 (1085)
|++++|+||||||||||+++|+|.+. . +| |.++|....+. ...+.++|++|+.. .. ++++ ++...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~---~~~l---~~~~~- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GT---RGPL---SRVGL- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEETT--SC---EEEE---EECCC-
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEecc--cc---eehh---hcccc-
Confidence 78999999999999999999999986 4 78 88888766433 23578899999741 11 1111 01000
Q ss_pred CCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHH-HHH
Q 001400 240 GSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL-TTG 318 (1085)
Q Consensus 240 ~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv-sia 318 (1085)
.+. +...+..+|. ....+|||||+++ +++
T Consensus 67 -------------------~~~------------------------------~~~~~~~v~~-~~~~ls~~er~~~~~l~ 96 (189)
T 2i3b_A 67 -------------------EPP------------------------------PGKRECRVGQ-YVVDLTSFEQLALPVLR 96 (189)
T ss_dssp -------------------CCC------------------------------SSSCCEESSS-SEECHHHHHTTTTTTTC
T ss_pred -------------------cCC------------------------------ccccccccce-EEEcchHHHHHHHHHHh
Confidence 000 0001124443 3346999999998 444
Q ss_pred H---HHhCCCcEeEEeC--CCCCCCHHHHHHHHHHHHHHHhccCCEEEE---EEecChhHHHhhcCeEEEecCCeEEEec
Q 001400 319 E---LLVGPARVLFMDE--ISNGLDSSTTYQIIKYLKHSTRALDGTTVI---SLLQPAPEAYELFDDVILLSEGQIVYQG 390 (1085)
Q Consensus 319 ~---al~~~p~vlllDE--ptsgLD~~~~~~i~~~l~~~~~~~~~t~ii---~~~q~~~~~~~~~D~ii~L~~G~iv~~G 390 (1085)
+ |+..+|++++||| |+..+|......|.+.++ . ..++|+ +++|..+ ..+.|+|..+.+|+++...
T Consensus 97 ~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~----~-~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 97 NADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLS----T-PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHH----C-SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEECC
T ss_pred hhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHh----C-CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEEeC
Confidence 4 5789999999999 899999987666665554 2 234443 3336553 3566888888888888643
No 177
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=1.4e-15 Score=173.40 Aligned_cols=168 Identities=21% Similarity=0.202 Sum_probs=99.3
Q ss_pred eecccc-eeeEeCCeEEEEeCCCCCChhHHHHHHHhhh--CCCC-ceeeE-EEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 149 TILDDL-SGIIRPSRLTLLLGPPSSGKTTLLLALAGRL--GHHL-QVSGK-ITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 149 ~iL~~v-s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l--~~~~-~~~G~-i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
..|+++ .+.+++|++++|+||||||||||++.|++.. ++.. ...|. |++++.+. ..++.+++++|...+++.
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~---~~~~~i~~i~q~~~~~~~ 194 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT---FRPERIREIAQNRGLDPD 194 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSC---CCHHHHHHHHHTTTCCHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCC---CCHHHHHHHHHHcCCCHH
Confidence 456665 6899999999999999999999999999987 3320 11367 78887543 112345666666543333
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
++.+|+.+....
T Consensus 195 -~v~~ni~~~~~~------------------------------------------------------------------- 206 (349)
T 1pzn_A 195 -EVLKHIYVARAF------------------------------------------------------------------- 206 (349)
T ss_dssp -HHGGGEEEEECC-------------------------------------------------------------------
T ss_pred -HHhhCEEEEecC-------------------------------------------------------------------
Confidence 555554332100
Q ss_pred cccCchhhhhHHHHHHHHh-------CCCcEeEEeCCCCCCCHHH------------HHHHHHHHHHHHhccCCEEEEEE
Q 001400 304 LKGISGGQKKRLTTGELLV-------GPARVLFMDEISNGLDSST------------TYQIIKYLKHSTRALDGTTVISL 364 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~-------~~p~vlllDEptsgLD~~~------------~~~i~~~l~~~~~~~~~t~ii~~ 364 (1085)
-|++|++++.++++++ .+|+++++||||++||+.. ..+++..|+++++..+ ++++.+
T Consensus 207 ---~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~-~tvii~ 282 (349)
T 1pzn_A 207 ---NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYD-IAVFVT 282 (349)
T ss_dssp ---SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTT-CEEEEE
T ss_pred ---ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcC-cEEEEE
Confidence 1233444444444444 7899999999999999852 3566677777776544 445556
Q ss_pred ecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 365 LQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 365 ~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
.|........|++......|+++.++.
T Consensus 283 ~h~~~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 283 NQVQARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EECC---------------CCCCCTTC
T ss_pred cccccccccccCCccccCCcceEeecC
Confidence 676666655666677777787766654
No 178
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.51 E-value=1e-15 Score=174.54 Aligned_cols=138 Identities=20% Similarity=0.161 Sum_probs=93.5
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee----eeE-EEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII----EGD-IYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~----~G~-i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
++.|++|++++|+||||||||||++.|++.....+. .|. |+|++.+.. ..+.+++++|...+.+. ++.+|+
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~---~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF---RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC---CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC---CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 578999999999999999999999999985411112 267 889886531 12234455554433222 333332
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-------cCCCEEEEeCCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-------ANPSIVFMDEPT 996 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-------~~p~illlDEPt 996 (1085)
.+. .. .-|.+|+|++.++++++ .+|++|++||||
T Consensus 201 ~~~-------------------------------~~--------~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~t 241 (349)
T 1pzn_A 201 YVA-------------------------------RA--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLT 241 (349)
T ss_dssp EEE-------------------------------EC--------CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSS
T ss_pred EEE-------------------------------ec--------CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCch
Confidence 211 00 01466777777777777 689999999999
Q ss_pred CCCCHHH------------HHHHHHHHHHHHH-CCceEEEEecCcc
Q 001400 997 SGLDARA------------AAIVMRTVRNIVN-TGRTIVCTIHQPS 1029 (1085)
Q Consensus 997 sgLD~~~------------~~~i~~~l~~~~~-~g~tvi~~~H~~~ 1029 (1085)
+++|+.. ...+++.|+++++ .|.|||+|+|...
T Consensus 242 a~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~ 287 (349)
T 1pzn_A 242 SHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA 287 (349)
T ss_dssp TTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC-
T ss_pred HhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc
Confidence 9999852 3556666777664 5899999999864
No 179
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.50 E-value=1.3e-16 Score=165.44 Aligned_cols=171 Identities=16% Similarity=0.132 Sum_probs=106.4
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-hcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-ETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPS 933 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 933 (1085)
|++++|+|+||||||||+++|+|... .+| |.++|++..+ ...++.+||++|+.. ... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~---~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~--g~~---~~l---~~~~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK---SSG-VPVDGFYTEEVRQGGRRIGFDVVTLS--GTR---GPL---SRVGL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH---HTT-CCCEEEECCEEETTSSEEEEEEEETT--SCE---EEE---EECCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc---cCC-EEEcCEecchhHhhhceEEEEEEecc--cce---ehh---hcccc--
Confidence 78999999999999999999999653 257 8888876543 235678999999751 111 111 00000
Q ss_pred cccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHH-HHHH---HHhcCCCEEEEeC--CCCCCCHHHHHH
Q 001400 934 EIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRL-TIAV---ELVANPSIVFMDE--PTSGLDARAAAI 1006 (1085)
Q Consensus 934 ~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl-~iA~---aL~~~p~illlDE--PtsgLD~~~~~~ 1006 (1085)
...+ ..+..++..+ ..+|+|||+++ ++++ |++.+|+|||||| ||..+|......
T Consensus 67 ------------------~~~~~~~~~~v~~~~-~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 67 ------------------EPPPGKRECRVGQYV-VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp ------------------CCCSSSCCEESSSSE-ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred ------------------cCCccccccccceEE-EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0000 0011222221 35899999888 4454 6789999999999 899999876555
Q ss_pred HHHHHHHHHHCCceEEE----EecCccHHHHHhcCEEEEEecCcEEEEecCCCCc--hHHHHHHHH
Q 001400 1007 VMRTVRNIVNTGRTIVC----TIHQPSIDIFESFDELLFMKRGGELIYAGPLGSK--SCELIKYFE 1066 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~----~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~--~~~~~~~~~ 1066 (1085)
+.++++ ...++|+ ++|+.+. ...|++..+. +|+++...+-..+ .++++++.+
T Consensus 128 l~~~l~----~~~~~ilgti~vsh~~~~---~~vd~i~~~~-~~~i~~~~~~nr~~~~~~i~~~~~ 185 (189)
T 2i3b_A 128 VRQTLS----TPGTIILGTIPVPKGKPL---ALVEEIRNRK-DVKVFNVTKENRNHLLPDIVTCVQ 185 (189)
T ss_dssp HHHHHH----CSSCCEEEECCCCCSSCC---TTHHHHHTTC-CSEEEECCSSSGGGHHHHHHHHHT
T ss_pred HHHHHh----CCCcEEEEEeecCCCCch---HHHHHHeecC-CcEEEEeChHhHHHHHHHHHHHHH
Confidence 555544 4445553 3398642 2346665554 5788876654432 344555443
No 180
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.50 E-value=1.3e-13 Score=162.32 Aligned_cols=75 Identities=20% Similarity=0.340 Sum_probs=64.2
Q ss_pred ccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE
Q 001400 305 KGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL 380 (1085)
Q Consensus 305 ~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~ 380 (1085)
..||||||||++||++|+ .+|++++||||+++||+..+..+.+.|+++.. .++++++++|. .+....+|+++.
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~~~ii~th~-~~~~~~~d~~~~ 408 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN--PDLQFIVISLK-NTMFEKSDALVG 408 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB--TTBEEEEECSC-HHHHTTCSEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc--CCCEEEEEECC-HHHHHhCCEEEE
Confidence 459999999999999999 68999999999999999999999999998753 24455556676 567889999999
Q ss_pred ec
Q 001400 381 LS 382 (1085)
Q Consensus 381 L~ 382 (1085)
|.
T Consensus 409 ~~ 410 (430)
T 1w1w_A 409 VY 410 (430)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 181
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.49 E-value=2.1e-14 Score=180.42 Aligned_cols=155 Identities=13% Similarity=0.133 Sum_probs=99.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..|++|+|+.+++|++++|+|||||||||||+++++..-.. ..| . +.+.. .+.++.-+..+..+.+.
T Consensus 660 ~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~a--q~g------~----~vpa~-~~~i~~~d~i~~~ig~~ 726 (918)
T 3thx_B 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMA--QIG------S----YVPAE-EATIGIVDGIFTRMGAA 726 (918)
T ss_dssp SSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHH--HHT------C----CBSSS-EEEEECCSEEEEEC---
T ss_pred ceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHh--hcC------c----cccch-hhhhhHHHHHHHhCChH
Confidence 46899999999999999999999999999999998753110 011 0 00111 11111111122222222
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
+++. ....++
T Consensus 727 d~l~----------------------------------------------------------------------~~~stf 736 (918)
T 3thx_B 727 DNIY----------------------------------------------------------------------KGRSTF 736 (918)
T ss_dssp -----------------------------------------------------------------------------CCH
T ss_pred HHHH----------------------------------------------------------------------HhHHHh
Confidence 2110 123469
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHH-HHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE-ecCCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQII-KYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQ 385 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~-~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~-L~~G~ 385 (1085)
|+|++|++.|+++ +.+|+++||||||+|||+.....+. ..++.+.+..+.+ ++.++|+. ++.+++|+.-- +.+++
T Consensus 737 s~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~t-vl~vTH~~-el~~l~~~~~~~v~n~~ 813 (918)
T 3thx_B 737 MEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL-TLFVTHYP-PVCELEKNYSHQVGNYH 813 (918)
T ss_dssp HHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCE-EEEECSCG-GGGGHHHHTTTTEEEEE
T ss_pred hHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCe-EEEEeCcH-HHHHHHhhcccceEEEE
Confidence 9999999999999 8999999999999999999999987 6677765543444 45566764 45566665421 34444
Q ss_pred EEE
Q 001400 386 IVY 388 (1085)
Q Consensus 386 iv~ 388 (1085)
+.+
T Consensus 814 ~~~ 816 (918)
T 3thx_B 814 MGF 816 (918)
T ss_dssp EEE
T ss_pred EEE
Confidence 443
No 182
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.49 E-value=2.4e-15 Score=167.61 Aligned_cols=148 Identities=14% Similarity=0.108 Sum_probs=101.5
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---------CceEEEEccCCCCCCCCCHHHHH
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
+|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... ++.++|++|++..+|.+||+|++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~---~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNL---GKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTT---TCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhc---CCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 79999999999999999999999999876 8999999988654321 23589999998888889999999
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1085)
.++... +. +. .+++..|+.+..+ +-++..
T Consensus 178 ~~~~~~-~~----d~--------------------------------------~llDt~G~~~~~~--------~~~~eL 206 (304)
T 1rj9_A 178 QAMKAR-GY----DL--------------------------------------LFVDTAGRLHTKH--------NLMEEL 206 (304)
T ss_dssp HHHHHH-TC----SE--------------------------------------EEECCCCCCTTCH--------HHHHHH
T ss_pred HHHHhC-CC----CE--------------------------------------EEecCCCCCCchH--------HHHHHH
Confidence 764211 00 00 0011122222111 124455
Q ss_pred hhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC
Q 001400 311 QKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1085)
+|||++|||+++.+|+.++| .||+.+..++++.++.+.+..+.+.|+ ++|.
T Consensus 207 s~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~~~~~~~~~~~~~t~ii-vTh~ 257 (304)
T 1rj9_A 207 KKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGLEQAKKFHEAVGLTGVI-VTKL 257 (304)
T ss_dssp HHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHHHHHHHHHHHHCCSEEE-EECT
T ss_pred HHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHHHHHHHHHHHcCCcEEE-EECC
Confidence 58999999999999994444 455555556666677665544555555 5554
No 183
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.48 E-value=6.3e-15 Score=183.71 Aligned_cols=144 Identities=13% Similarity=0.051 Sum_probs=95.1
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHH
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+..+++|+|++ ++|++++|+|||||||||||++|+|.... +. .|..+... ...++++.| +++.+++.
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q---~G~~vpa~--~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AY---IGSYVPAQ--KVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HT---TTCCBSSS--EEEECCCCE---EEEEEC--
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----Hh---cCcccchh--cccceeHHH---HHhhCCHH
Confidence 45689999999 99999999999999999999999984210 00 11111111 123455544 33344444
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD 1000 (1085)
|++..+ .+.+|+|+++ ++.+..++.+|+++|||||++|+|
T Consensus 661 d~l~~~---------------------------------------~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd 700 (800)
T 1wb9_A 661 DDLASG---------------------------------------RSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTS 700 (800)
T ss_dssp ------------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSS
T ss_pred HHHHhh---------------------------------------hhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCC
Confidence 443210 1246777664 455556789999999999999999
Q ss_pred HHHHHHH-HHHHHHHHH-CCceEEEEecCccHHHHHhcCEE
Q 001400 1001 ARAAAIV-MRTVRNIVN-TGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 1001 ~~~~~~i-~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.....+ +.+++.+.+ .|.++|++||+++. .+.+|++
T Consensus 701 ~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el--~~l~d~~ 739 (800)
T 1wb9_A 701 TYDGLSLAWACAENLANKIKALTLFATHYFEL--TQLPEKM 739 (800)
T ss_dssp SSHHHHHHHHHHHHHHHTTCCEEEEECSCGGG--GGHHHHS
T ss_pred hhHHHHHHHHHHHHHHhccCCeEEEEeCCHHH--HHHhhhh
Confidence 8776665 788888877 49999999999753 4556654
No 184
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.48 E-value=2e-15 Score=168.67 Aligned_cols=156 Identities=13% Similarity=0.149 Sum_probs=80.7
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh-hCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR-LGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~-l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lT 225 (1085)
++.+++|+++.| +|+||||||||||+++|+|. +.+. +| |.++|.+.......+.++|++|.+.....+|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~---~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~lt 79 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPE---RV-ISGAAEKIERTVQIEASTVEIEERGVKLRLT 79 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCC---CC-cccCCcccCCcceEeeEEEEecCCCcccCcc
Confidence 346999999998 99999999999999999996 5543 78 8888876543222345789999887788899
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
|.||..++..... ..+++ ..++++.+. .+ ...+
T Consensus 80 v~Dt~g~~~~~~~-~e~~~-----------------------------------~l~~~l~~~------~~-----~~~~ 112 (301)
T 2qnr_A 80 VVDTPGYGDAINC-RDCFK-----------------------------------TIISYIDEQ------FE-----RYLH 112 (301)
T ss_dssp EEEEC------------CT-----------------------------------THHHHHHHH------HH-----HHHH
T ss_pred hhhhhhhhhhcCc-HHHHH-----------------------------------HHHHHHHHH------HH-----HHHH
Confidence 9999877432100 00000 011111111 11 2345
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEeCCCCC-CCHHHHHHHHHHHHHHHhccCCEEEEEEecCh
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMDEISNG-LDSSTTYQIIKYLKHSTRALDGTTVISLLQPA 368 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllDEptsg-LD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~ 368 (1085)
++|||||||+.+||+++ ++++||||++ ||+... +.++++... ...+++...|+.
T Consensus 113 ~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~-~~iilV~~K~Dl 167 (301)
T 2qnr_A 113 DESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNK-VNIVPVIAKADT 167 (301)
T ss_dssp HHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTT-SCEEEEECCGGG
T ss_pred HhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhc-CCEEEEEEeCCC
Confidence 79999999999998875 9999999985 999873 455555432 245555555654
No 185
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.48 E-value=1.3e-14 Score=179.91 Aligned_cols=132 Identities=17% Similarity=0.140 Sum_probs=94.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC-CCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
..+++|+|+. |++++|+|||||||||||++|+|... +. .|.+. + .....++|++| +++.+|+
T Consensus 566 ~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~---~G~~v----p----a~~~~i~~v~~---i~~~~~~ 628 (765)
T 1ewq_A 566 EFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQ---VGSFV----P----AEEAHLPLFDG---IYTRIGA 628 (765)
T ss_dssp CCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHT---TTCCB----S----SSEEEECCCSE---EEEECCC
T ss_pred ceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcc---cCcee----e----hhccceeeHHH---hhccCCH
Confidence 4678899998 99999999999999999999999753 22 34321 0 01235677766 4555666
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
.|++. .+
T Consensus 629 ~d~l~-------------------------------------------------------------------------~g 635 (765)
T 1ewq_A 629 SDDLA-------------------------------------------------------------------------GG 635 (765)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHH-------------------------------------------------------------------------hc
Confidence 65542 14
Q ss_pred CchhhhhHHHHHHHH--hCCCcEeEEeCC---CCCCCHHHH-HHHHHHHHHHHhccCCEEEEEEecChhHHHhhc
Q 001400 307 ISGGQKKRLTTGELL--VGPARVLFMDEI---SNGLDSSTT-YQIIKYLKHSTRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 307 LSGGqkqRvsia~al--~~~p~vlllDEp---tsgLD~~~~-~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
+|+|+++++.+++++ +.+|++++|||| |++||..+. ..+.+.|++ .+.++ +.++|+.+. .+++
T Consensus 636 ~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~v-l~~TH~~~l-~~~~ 704 (765)
T 1ewq_A 636 KSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYT-LFATHYFEL-TALG 704 (765)
T ss_dssp CSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEE-EEECCCHHH-HTCC
T ss_pred ccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEE-EEEeCCHHH-HHhh
Confidence 899999999999999 999999999999 999998875 568888875 23444 446676544 3444
No 186
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.46 E-value=4.9e-14 Score=156.01 Aligned_cols=151 Identities=22% Similarity=0.198 Sum_probs=100.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLR 930 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~ 930 (1085)
.+++|++++|+|+||||||||++.+++... .|.+ +.|.+... ...+.|+..++.. ..+.+.+. .+.
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~----~g~~-~~g~~~~~---~~~v~~~~~e~~~---~~~~~r~~---~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA----GGPD-LLEVGELP---TGPVIYLPAEDPP---TAIHHRLH---ALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH----TCCC-TTCCCCCC---CCCEEEEESSSCH---HHHHHHHH---HHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh----cCCC-cCCCccCC---CccEEEEECCCCH---HHHHHHHH---HHH
Confidence 478999999999999999999999997432 2443 23443211 2346676654321 01111111 011
Q ss_pred CCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC--CCCHHH---HH
Q 001400 931 LPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS--GLDARA---AA 1005 (1085)
Q Consensus 931 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts--gLD~~~---~~ 1005 (1085)
. .... ...+++++.+.+.+..+.. +..||+||+|++ ++++.+|++|++||||+ ++|... ..
T Consensus 92 ~--~~~~----~~~~~~~~~l~l~~~~~~~-----~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 A--HLSA----EERQAVADGLLIQPLIGSL-----PNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp T--TSCH----HHHHHHHHHEEECCCTTSC-----CCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHH
T ss_pred h--hcCh----hhhhhccCceEEeecCCCC-----cccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHH
Confidence 1 1111 2245667777776655432 356999998765 68889999999999999 999744 47
Q ss_pred HHHHHHHHHH-HCCceEEEEecCcc
Q 001400 1006 IVMRTVRNIV-NTGRTIVCTIHQPS 1029 (1085)
Q Consensus 1006 ~i~~~l~~~~-~~g~tvi~~~H~~~ 1029 (1085)
.+++.|++++ +.|+|||+++|+..
T Consensus 158 ~~~~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 158 QVIGRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHHHHcCCEEEEEecCCC
Confidence 8888898886 45999999999864
No 187
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.46 E-value=1.4e-15 Score=185.74 Aligned_cols=165 Identities=19% Similarity=0.161 Sum_probs=108.0
Q ss_pred EEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCC------CCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 164 TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFK------EFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~------~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1085)
++|+|||||||||||++|+|.+.| ..+|.|+++|.++. ....++.++|++|++.+++.+||+|++.++....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P--~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~ 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP--RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC---------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH
T ss_pred EEEECCCCChHHHHHHHHhCCCCC--CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999998755 13899999998742 1134568999999999899999999998754321
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHH
Q 001400 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1085)
+... .++| ++++.+
T Consensus 126 ~~~~---------------------------------------------------------------~~~s---~~~i~l 139 (608)
T 3szr_A 126 AGEG---------------------------------------------------------------MGIS---HELITL 139 (608)
T ss_dssp HCSS---------------------------------------------------------------SCCC---SCCEEE
T ss_pred cCCc---------------------------------------------------------------cccc---hHHHHH
Confidence 1000 0011 111222
Q ss_pred HHHHhCCCcEeEEeCC------CCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh----HHHhh--------cCeEE
Q 001400 318 GELLVGPARVLFMDEI------SNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP----EAYEL--------FDDVI 379 (1085)
Q Consensus 318 a~al~~~p~vlllDEp------tsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~----~~~~~--------~D~ii 379 (1085)
+.+....|+++++||| |+|||+....++.+.++++.......+++.++|+.+ ++..+ ...|+
T Consensus 140 ~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~ 219 (608)
T 3szr_A 140 EISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIG 219 (608)
T ss_dssp EEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEE
T ss_pred HhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEE
Confidence 2222357999999999 999999999999999999765444566666666654 22222 23578
Q ss_pred EecCCeEEEecChhhHH
Q 001400 380 LLSEGQIVYQGPRVSVL 396 (1085)
Q Consensus 380 ~L~~G~iv~~G~~~~~~ 396 (1085)
++..+.++..|+.+++.
T Consensus 220 VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 220 ILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp EEECGGGSSSSSTTCCC
T ss_pred EecchhhcCcccHHHHH
Confidence 88888888777765444
No 188
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.46 E-value=1.1e-14 Score=156.08 Aligned_cols=167 Identities=14% Similarity=0.143 Sum_probs=103.9
Q ss_pred EEeeeeeE-EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccc---eEEEEccCCCCCCCCC
Q 001400 843 QLLVNVTG-AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFAR---ISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 843 ~~L~~vs~-~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~---~~gy~~Q~~~~~~~~t 918 (1085)
..|+++.+ .+++|++++|+|+||||||||++.|++... ...|.+.+.+.+.......+ ..++.+|....
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 82 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL--RDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIE----- 82 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH--HHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBT-----
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH--HCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhh-----
Confidence 34566765 789999999999999999999999997432 12344544333221111000 01111110000
Q ss_pred HHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC--EEEEeCCC
Q 001400 919 VLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS--IVFMDEPT 996 (1085)
Q Consensus 919 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~--illlDEPt 996 (1085)
+++. .++......+ .... ....|.++.++...+.+...+|+ +|++||||
T Consensus 83 --~~~~------------------~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 --KKLI------------------IIDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp --TTEE------------------EEECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred --CCEE------------------EEeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 0000 0000000000 0000 12358999998888888888999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHHHH-CCceEEEEecCcc-------HHHHHhcCEEEEEecC
Q 001400 997 SGL--DARAAAIVMRTVRNIVN-TGRTIVCTIHQPS-------IDIFESFDELLFMKRG 1045 (1085)
Q Consensus 997 sgL--D~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~-------~~~~~~~d~il~l~~g 1045 (1085)
+++ |+.....+++.|+++++ .|.|||+++|+.. ..+...+|++++|++.
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 99999999999999864 5999999999972 1366779999999853
No 189
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=1.6e-14 Score=164.34 Aligned_cols=125 Identities=18% Similarity=0.261 Sum_probs=82.4
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
.+.+|++++|+||||||||||+++|+|... +. .|.|...+.+.. .......+++.|.....
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~--~~~~~~i~t~ed~~e-~~~~~~~~~v~q~~~~~--------------- 180 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLN--NTKYHHILTIEDPIE-FVHESKKCLVNQREVHR--------------- 180 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHH--HHCCCEEEEEESSCC-SCCCCSSSEEEEEEBTT---------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhccc--CCCCcEEEEccCcHH-hhhhccccceeeeeecc---------------
Confidence 678999999999999999999999999654 22 345543332221 01111112222211100
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
..++..+ +||+||..+|++|++|||| |.++...
T Consensus 181 -------------------------------------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~--- 213 (356)
T 3jvv_A 181 -------------------------------------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRL--- 213 (356)
T ss_dssp -------------------------------------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHH---
T ss_pred -------------------------------------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHH---
Confidence 1123322 8999999999999999999 6665443
Q ss_pred HHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 1010 TVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 1010 ~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
+.+.+.+|.|||+|+|+.+. . ..+||++.|.
T Consensus 214 -~~~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~ 244 (356)
T 3jvv_A 214 -ALTAAETGHLVFGTLHTTSA-A-KTIDRVVDVF 244 (356)
T ss_dssp -HHHHHHTTCEEEEEESCSSH-H-HHHHHHHHTS
T ss_pred -HHHHHhcCCEEEEEEccChH-H-HHHHHHhhhc
Confidence 33445679999999999873 3 6788887774
No 190
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.42 E-value=5.7e-13 Score=142.64 Aligned_cols=78 Identities=15% Similarity=0.057 Sum_probs=62.9
Q ss_pred cCchhhhhHHHHHHHHhCCCc--EeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCEEEEEEecCh--------hHHHh
Q 001400 306 GISGGQKKRLTTGELLVGPAR--VLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPA--------PEAYE 373 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~--vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~--------~~~~~ 373 (1085)
..|.+|.++...+.+...+|+ ++++||||+++ |+.....+++.|+++++.. +.+++.++|.. +.+.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~-~~~vi~~~h~~~~~~~~~~~~~~~ 181 (235)
T 2w0m_A 103 NLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKW-NFTIYATSQYAITTSQAFGFGVEH 181 (235)
T ss_dssp SCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHT-TEEEEEEEC-----------CHHH
T ss_pred CCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhC-CCeEEEEeccCcccccccccchhe
Confidence 358999988888877778999 99999999888 9999999999999987654 45566677777 55888
Q ss_pred hcCeEEEecCC
Q 001400 374 LFDDVILLSEG 384 (1085)
Q Consensus 374 ~~D~ii~L~~G 384 (1085)
++|+|++|+..
T Consensus 182 ~~d~vi~l~~~ 192 (235)
T 2w0m_A 182 VADGIIRFRRM 192 (235)
T ss_dssp HCSEEEEEEEE
T ss_pred eeeEEEEEEEE
Confidence 99999999754
No 191
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.41 E-value=3.5e-13 Score=149.09 Aligned_cols=154 Identities=15% Similarity=0.182 Sum_probs=99.1
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1085)
-+++|++++|+||||||||||++.+++.+. .|.+ +.|.+.. ....+.|+..++.. ..+.+.+. ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~-~~g~~~~---~~~~v~~~~~e~~~---~~~~~r~~---~~ 90 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPD-LLEVGEL---PTGPVIYLPAEDPP---TAIHHRLH---AL 90 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCC-TTCCCCC---CCCCEEEEESSSCH---HHHHHHHH---HH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCC-cCCCccC---CCccEEEEECCCCH---HHHHHHHH---HH
Confidence 589999999999999999999999998664 3554 2343321 13467888766531 01111110 00
Q ss_pred cCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHH
Q 001400 237 QGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLT 316 (1085)
Q Consensus 237 ~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvs 316 (1085)
+.. ......+.+++.+++.+..+. .+..+|+||++++
T Consensus 91 --------------------g~~-----------------~~~~~~~~~~~~l~l~~~~~~-----~~~~ls~g~~~~i- 127 (279)
T 1nlf_A 91 --------------------GAH-----------------LSAEERQAVADGLLIQPLIGS-----LPNIMAPEWFDGL- 127 (279)
T ss_dssp --------------------HTT-----------------SCHHHHHHHHHHEEECCCTTS-----CCCTTSHHHHHHH-
T ss_pred --------------------Hhh-----------------cChhhhhhccCceEEeecCCC-----CcccCCHHHHHHH-
Confidence 000 001124556777777665443 3456999998875
Q ss_pred HHHHHhCCCcEeEEeCCCC--CCCHHHH---HHHHHHHHHHHhccCCEEEEEEecChhHH
Q 001400 317 TGELLVGPARVLFMDEISN--GLDSSTT---YQIIKYLKHSTRALDGTTVISLLQPAPEA 371 (1085)
Q Consensus 317 ia~al~~~p~vlllDEpts--gLD~~~~---~~i~~~l~~~~~~~~~t~ii~~~q~~~~~ 371 (1085)
++++.+|+++++||||+ ++|.... .++++.|+++++..+.+ |+.++|.....
T Consensus 128 --~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~t-vi~i~H~~~~~ 184 (279)
T 1nlf_A 128 --KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCS-IVFLHHASKGA 184 (279)
T ss_dssp --HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCE-EEEEEEC----
T ss_pred --HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCE-EEEEecCCCcc
Confidence 67888999999999999 9997544 78888999887655555 45566665443
No 192
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.41 E-value=6.8e-14 Score=174.43 Aligned_cols=156 Identities=11% Similarity=0.030 Sum_probs=101.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++|+++. ++|++++|+|||||||||||++|+|..... .. |..+.. ....++++.| +++.+++.
T Consensus 595 ~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~--q~------G~~vpa--~~~~i~~~~~---i~~~~~~~ 660 (800)
T 1wb9_A 595 PFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMA--YI------GSYVPA--QKVEIGPIDR---IFTRVGAA 660 (800)
T ss_dssp CCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHH--TT------TCCBSS--SEEEECCCCE---EEEEEC--
T ss_pred ceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHH--hc------Ccccch--hcccceeHHH---HHhhCCHH
Confidence 4689999999 999999999999999999999999974211 01 111110 0123455544 45555665
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
|++..+ ..++
T Consensus 661 d~l~~~----------------------------------------------------------------------~stf 670 (800)
T 1wb9_A 661 DDLASG----------------------------------------------------------------------RSTF 670 (800)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHHhh----------------------------------------------------------------------hhhh
Confidence 555321 1135
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHH-HHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQI-IKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i-~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~i 386 (1085)
|+++++ ++.+...+.+|++++||||++|+|+.....+ +..++.+.+..+.+ ++.++|+.+ ...++|++..+.+|++
T Consensus 671 ~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~-vl~~TH~~e-l~~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 671 MVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKAL-TLFATHYFE-LTQLPEKMEGVANVHL 747 (800)
T ss_dssp HHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCE-EEEECSCGG-GGGHHHHSTTEEEEEE
T ss_pred hHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCe-EEEEeCCHH-HHHHhhhhhceEEEEE
Confidence 666654 4444556899999999999999999877775 67777776533444 444667654 4568898877888888
Q ss_pred EEec
Q 001400 387 VYQG 390 (1085)
Q Consensus 387 v~~G 390 (1085)
.+..
T Consensus 748 ~~~~ 751 (800)
T 1wb9_A 748 DALE 751 (800)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7654
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.40 E-value=2.3e-14 Score=174.99 Aligned_cols=136 Identities=13% Similarity=0.165 Sum_probs=93.2
Q ss_pred EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCC------hhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 858 TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKR------QETFARISGYCEQNDIHSPGLTVLESLLFSAWLRL 931 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~------~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~ 931 (1085)
+||+|+||||||||+++|+|...+ ..+|.|.++|.++. ...+++.+||++|++.+++..||+|++.+.....
T Consensus 48 iaIvG~nGsGKSTLL~~I~Gl~~P-~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~- 125 (608)
T 3szr_A 48 IAVIGDQSSGKSSVLEALSGVALP-RGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI- 125 (608)
T ss_dssp EECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH-
T ss_pred EEEECCCCChHHHHHHHHhCCCCC-CCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh-
Confidence 999999999999999999998642 14899999998741 1346778999999999999999999987642111
Q ss_pred CCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC------CCCCCHHHHH
Q 001400 932 PSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP------TSGLDARAAA 1005 (1085)
Q Consensus 932 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP------tsgLD~~~~~ 1005 (1085)
+... .++| ++++.++++...+|+++++||| |+|||+..+.
T Consensus 126 --------------------~~~~-----------~~~s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~ 171 (608)
T 3szr_A 126 --------------------AGEG-----------MGIS---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGY 171 (608)
T ss_dssp --------------------HCSS-----------SCCC---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHH
T ss_pred --------------------cCCc-----------cccc---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHH
Confidence 0000 0011 1112223333458999999999 9999999999
Q ss_pred HHHHHHHHHHHC--CceEEEEecCcc
Q 001400 1006 IVMRTVRNIVNT--GRTIVCTIHQPS 1029 (1085)
Q Consensus 1006 ~i~~~l~~~~~~--g~tvi~~~H~~~ 1029 (1085)
.+.++++++.++ +.++++++|+.+
T Consensus 172 ~i~~li~~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 172 KIKTLIKKYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHHHHHHHHTTSSSCCEEEEEESSSC
T ss_pred HHHHHHHHHHhcCCCCceEEEeccch
Confidence 999999997543 677889999876
No 194
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.39 E-value=6.5e-13 Score=135.17 Aligned_cols=74 Identities=11% Similarity=0.171 Sum_probs=65.0
Q ss_pred CCCCHHHHHHHHHHHHHhc----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 967 NGLSTEQRKRLTIAVELVA----NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~----~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
..||||||||++||++|+. +|+++||||||+|||+.+...+.+.|+++. .+.++|++||+. ...+.+|+++.+
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~-~~~~~ivith~~--~~~~~ad~i~~v 139 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESS-KESQFIVITLRD--VMMANADKIIGV 139 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhc-cCCEEEEEEecH--HHHHhCCEEEEE
Confidence 4699999999999999974 469999999999999999999999999975 457899999995 467889999865
Q ss_pred e
Q 001400 1043 K 1043 (1085)
Q Consensus 1043 ~ 1043 (1085)
.
T Consensus 140 ~ 140 (173)
T 3kta_B 140 S 140 (173)
T ss_dssp E
T ss_pred E
Confidence 3
No 195
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=1.2e-14 Score=168.48 Aligned_cols=156 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred cccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001400 837 VLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 837 ~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
..+++..+++|+||+| +|+|+||||||||+++|+|........|.+.+++.+ ....+.++|++|.+...+.
T Consensus 19 ~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~ 89 (418)
T 2qag_C 19 NQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK---TVQVEQSKVLIKEGGVQLL 89 (418)
T ss_dssp CCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC--------CCEEEEEECC------CEE
T ss_pred eeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc---ceeeeeEEEEEecCCcccc
Confidence 3345567899999998 999999999999999999965411112322222211 1123568999998888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCC---EEEEe
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPS---IVFMD 993 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~---illlD 993 (1085)
+|+.|++.++..... .. ....+.+.++ ..++.+++||++|||+++.+|+ +|++|
T Consensus 90 Ltv~Dt~g~~~~~~~------~~---~~~~i~~~i~--------------~~~~~~l~qr~~IaRal~~d~~~~vlL~ld 146 (418)
T 2qag_C 90 LTIVDTPGFGDAVDN------SN---CWQPVIDYID--------------SKFEDYLNAESRVNRRQMPDNRVQCCLYFI 146 (418)
T ss_dssp EEEEECC--------------------CHHHHHHHH--------------HHHHHHTTTSCC-CCCCCCCC-CCEEEEEC
T ss_pred eeeeechhhhhhccc------hh---hHHHHHHHHH--------------HHHHHHHHHHHHHHHHhccCCCeeEEEEEe
Confidence 899998876532110 00 0111111110 1356677889999999999999 99999
Q ss_pred CCC-CCCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 994 EPT-SGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 994 EPt-sgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
||| ++||+... ++++.+. .+.+||+++|..+
T Consensus 147 ePt~~~L~~~d~----~~lk~L~-~~v~iIlVinK~D 178 (418)
T 2qag_C 147 APSGHGLKPLDI----EFMKRLH-EKVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCSCCHHHH----HHHHHHT-TTSEEEEEEESTT
T ss_pred cCcccCCCHHHH----HHHHHHh-ccCcEEEEEEccc
Confidence 999 69998773 3444543 3778888888543
No 196
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.39 E-value=2.1e-14 Score=165.37 Aligned_cols=176 Identities=19% Similarity=0.168 Sum_probs=111.3
Q ss_pred cCCeEEeeeeeEEEeCCeE--EEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPG 916 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~ 916 (1085)
+++.+ |++||+++++|++ +||+|+||||||||+++|+|..- .|.- +... .....++.++|++|++.+++.
T Consensus 25 y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l----~g~~-~~~~--~~~~~~~~i~~v~Q~~~l~~~ 96 (427)
T 2qag_B 25 FDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF----EGEP-ATHT--QPGVQLQSNTYDLQESNVRLK 96 (427)
T ss_dssp CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------C--CSSCEEEEEEEEEEC--CEEE
T ss_pred ECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc----cCCc-CCCC--CccceEeeEEEEeecCccccc
Confidence 34445 8999999999999 99999999999999999999742 1211 1111 112234578999999888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHH----HHHHHHHHHHHHc-CCC----cccccc----c--CCCCCCCCCHHHHHHHHHHH
Q 001400 917 LTVLESLLFSAWLRLPSEIELE----TQRAFVEEVMELV-ELT----SLSGAL----I--GLPGINGLSTEQRKRLTIAV 981 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~----~~~~~~~~~l~~~-~l~----~~~~~~----~--~~~~~~~LS~Gqrqrl~iA~ 981 (1085)
+||.|++.|+... ....... ......++.++.. ++. ...+.. + -.+...+|+..+ +.|++
T Consensus 97 ltv~D~~~~g~~~--~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk 171 (427)
T 2qag_B 97 LTIVSTVGFGDQI--NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMK 171 (427)
T ss_dssp EEEEEEECCCC-C--CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HHHHH
T ss_pred cchhhhhhhhhcc--ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HHHHH
Confidence 9999998765321 0000000 1122334444443 332 111211 1 012223577666 78999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHHCCceEEEEecC
Q 001400 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRN-IVNTGRTIVCTIHQ 1027 (1085)
Q Consensus 982 aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~-~~~~g~tvi~~~H~ 1027 (1085)
+|..+++||++||||..|.+.....+.+.|++ +...|.+|+.++.+
T Consensus 172 ~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 172 KLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999997 76779999998865
No 197
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.37 E-value=5.5e-13 Score=160.46 Aligned_cols=76 Identities=20% Similarity=0.287 Sum_probs=69.9
Q ss_pred CCC-CHHHHHHHHHHHHHhcCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 967 NGL-STEQRKRLTIAVELVANP--SIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 967 ~~L-S~Gqrqrl~iA~aL~~~p--~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
..| |||||||++||++|+.+| ++|||||||+|||+.++..|.+.|+++.+ |.|||+|||+++ +...||++++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~--~~~~~d~~~~~~ 471 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ--IAARAHHHYKVE 471 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH--HHHHSSEEEEEE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEe
Confidence 357 999999999999999999 99999999999999999999999999986 899999999975 456799999996
Q ss_pred cC
Q 001400 1044 RG 1045 (1085)
Q Consensus 1044 ~g 1045 (1085)
++
T Consensus 472 ~~ 473 (517)
T 4ad8_A 472 KQ 473 (517)
T ss_dssp CC
T ss_pred cc
Confidence 53
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.36 E-value=8.6e-14 Score=147.81 Aligned_cols=148 Identities=16% Similarity=0.166 Sum_probs=98.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH----HHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV----RETLD 231 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV----~E~l~ 231 (1085)
-..++|++++|+||||||||||+++|+|.+++. ...|.|.+.+.+.... .++.++|++|++..|+.+|+ .|++.
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~ 88 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAE 88 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHH
Confidence 357899999999999999999999999998752 4689999998765432 23467899998765554444 22221
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
+. |+ +.|-.
T Consensus 89 ~~------------------------------------------------------------------~~-----~yg~~ 97 (219)
T 1s96_A 89 VF------------------------------------------------------------------GN-----YYGTS 97 (219)
T ss_dssp ET------------------------------------------------------------------TE-----EEEEE
T ss_pred HH------------------------------------------------------------------hc-----cCCCC
Confidence 11 10 11111
Q ss_pred hhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCCeEEEecC
Q 001400 312 KKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEGQIVYQGP 391 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G~iv~~G~ 391 (1085)
+++ .+.++..+++++|| ||+.++.++.+.+. .+.+|+.+.|+..++.. |+ +..| .++
T Consensus 98 ~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~------~~~tI~i~th~~~~l~~---Rl--~~rG----~~~ 154 (219)
T 1s96_A 98 REA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP------HARSIFILPPSKIELDR---RL--RGRG----QDS 154 (219)
T ss_dssp HHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT------TCEEEEEECSSHHHHHH---HH--HTTS----CSC
T ss_pred HHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc------CCEEEEEECCCHHHHHH---HH--HHcC----CCC
Confidence 221 33444557999999 99999999998775 25667767787777655 43 6777 677
Q ss_pred hhhHHHHH
Q 001400 392 RVSVLDFF 399 (1085)
Q Consensus 392 ~~~~~~~f 399 (1085)
.+++..-+
T Consensus 155 ~e~i~~rl 162 (219)
T 1s96_A 155 EEVIAKRM 162 (219)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776544
No 199
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.35 E-value=1.5e-14 Score=152.61 Aligned_cols=164 Identities=15% Similarity=0.039 Sum_probs=88.7
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCC---CCeeeeEEEEcCccCChhcccceEEEEccCCCCC----CC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKT---GGIIEGDIYISGYPKRQETFARISGYCEQNDIHS----PG 916 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~----~~ 916 (1085)
++++ +.+.+|.+++|+|+||||||||++.|+|... ..+..|.+.+.+.-. .....- +.+.+.+. +.
T Consensus 17 ~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~----~~~~~~-l~Dt~G~~~~~~~~ 89 (210)
T 1pui_A 17 DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFE----VADGKR-LVDLPGYGYAEVPE 89 (210)
T ss_dssp SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEE----EETTEE-EEECCCCC------
T ss_pred CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEE----ecCCEE-EEECcCCcccccCH
Confidence 4455 7789999999999999999999999999651 013345443211100 000000 00111110 00
Q ss_pred CC---HHHHHHHhhhh-cC--------CCcccHHHHHHHHHHHHHHcCCCcc--cccccCCCCCCCCCHHHHHH-HHHHH
Q 001400 917 LT---VLESLLFSAWL-RL--------PSEIELETQRAFVEEVMELVELTSL--SGALIGLPGINGLSTEQRKR-LTIAV 981 (1085)
Q Consensus 917 ~t---v~e~l~~~~~~-~~--------~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~~~~~LS~Gqrqr-l~iA~ 981 (1085)
.. .+..+...... +. ............+.+.++..++..+ .++ ...+|+||||| +..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK------~D~~s~~~~~~~~~~~~ 163 (210)
T 1pui_A 90 EMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTK------ADKLASGARKAQLNMVR 163 (210)
T ss_dssp CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEEC------GGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEec------ccCCCchhHHHHHHHHH
Confidence 00 11111111000 00 0000001112233445555555432 222 23589999999 89999
Q ss_pred HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCce
Q 001400 982 ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT 1020 (1085)
Q Consensus 982 aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t 1020 (1085)
+++.+|.++++|||||++|......+++.|.++..+|.|
T Consensus 164 ~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 164 EAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp HHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred HHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999998755544
No 200
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.34 E-value=4.1e-13 Score=152.73 Aligned_cols=59 Identities=15% Similarity=0.193 Sum_probs=43.4
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecCC
Q 001400 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSEG 384 (1085)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~G 384 (1085)
+||++|..+|+++++|||+ |..+...+.+ .+. .|.+ +++++|..+.+ +.+||++.|..|
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~----~~~-~G~~-vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALT----AAE-TGHL-VFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHH----HHH-TTCE-EEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHH----HHh-cCCE-EEEEEccChHH-HHHHHHhhhcCc
Confidence 8999999999999999999 6666444433 333 3455 55566666655 889999998654
No 201
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.34 E-value=2.8e-15 Score=172.57 Aligned_cols=164 Identities=16% Similarity=0.064 Sum_probs=97.2
Q ss_pred ecccceeeEeC--CeEEEEeCCCCCChhHHHHHHHhhhCCCCcee----eEEEEC----CccCCCCCCC--ceEEEEccC
Q 001400 150 ILDDLSGIIRP--SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVS----GKITYN----GHGFKEFVPP--RTSAYVSQQ 217 (1085)
Q Consensus 150 iL~~vs~~i~~--G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~----G~i~~~----G~~~~~~~~~--~~~~yv~Q~ 217 (1085)
+.+.|+..+++ |+.++|+||||||||||+++|+|.+++. + |+|.++ |.+. ..... +.++|++|+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~---~~~e~G~i~i~~~~~~~~~-~~~~~~~~~I~~~~q~ 232 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTT---SAWEYGREFVFEKLGGDEQ-AMQYSDYPQMALGHQR 232 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCE---EECCTTHHHHHHSSSSCTT-SSCTTTHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCC---cchhhHHHHHHhhcCCCcc-cCChhHHHHHHHHHHH
Confidence 46789999999 9999999999999999999999998774 6 776653 2221 00000 112222222
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
... ...|++|||.|. ..+..++
T Consensus 233 ~~~-~~~t~~~nl~~~---------------------------------------------------------~~~~~~~ 254 (365)
T 1lw7_A 233 YID-YAVRHSHKIAFI---------------------------------------------------------DTDFITT 254 (365)
T ss_dssp HHH-HHHHHCSSEEEE---------------------------------------------------------SSCHHHH
T ss_pred HHH-HHHhccCCEEEE---------------------------------------------------------eCCchHH
Confidence 110 011111111110 0000011
Q ss_pred cccCcccccCchhhhhHHHHHHHHh-CCCcEeEEeC---CC------CCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLV-GPARVLFMDE---IS------NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP 367 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~-~~p~vlllDE---pt------sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~ 367 (1085)
....+|+|+++|..+++++. .+|+++|||| |+ .++|...+..+.+.|+++.+..+.++++ +.++
T Consensus 255 -----~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ili-lde~ 328 (365)
T 1lw7_A 255 -----QAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIE-IESP 328 (365)
T ss_dssp -----HHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEE-EECS
T ss_pred -----HHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEE-eCCC
Confidence 11236677788888888775 5899999999 65 5899999999999998876543444444 5555
Q ss_pred hhHHHhhcCeEEEec
Q 001400 368 APEAYELFDDVILLS 382 (1085)
Q Consensus 368 ~~~~~~~~D~ii~L~ 382 (1085)
.+...++|.+.+++
T Consensus 329 -~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 329 -SYLDRYNQVKAVIE 342 (365)
T ss_dssp -SHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHH
Confidence 35555666655554
No 202
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.33 E-value=3.5e-14 Score=150.80 Aligned_cols=126 Identities=20% Similarity=0.164 Sum_probs=85.2
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCH----HHHHHHh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTV----LESLLFS 926 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv----~e~l~~~ 926 (1085)
..++|++++|+||||||||||+++|+|..++....|.|.+.+.+.+.. .++.++|++|++..++.+++ .|++.+.
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~-e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~ 90 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPG-EVHGEHYFFVNHDEFKEMISRDAFLEHAEVF 90 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTT-CCBTTTBEECCHHHHHHHHHTTCEEEEEEET
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcc-cccCceEEECCHHHHHHHHhcCHHHHHHHHH
Confidence 457999999999999999999999999754213678999988765432 24457889886544333222 1211110
Q ss_pred hhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHH
Q 001400 927 AWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAI 1006 (1085)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~ 1006 (1085)
. ... +.| ++. +.+++..++++||| ||+.++..
T Consensus 91 ~-------------------------------~~y------g~~---~~~---v~~~l~~G~illLD-----LD~~~~~~ 122 (219)
T 1s96_A 91 G-------------------------------NYY------GTS---REA---IEQVLATGVDVFLD-----IDWQGAQQ 122 (219)
T ss_dssp T-------------------------------EEE------EEE---HHH---HHHHHTTTCEEEEE-----CCHHHHHH
T ss_pred h-------------------------------ccC------CCC---HHH---HHHHHhcCCeEEEE-----ECHHHHHH
Confidence 0 000 111 111 34455668999999 99999999
Q ss_pred HHHHHHHHHHCCceEEEEecCcc
Q 001400 1007 VMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 1007 i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
+++.+. .+.||++++|+++
T Consensus 123 i~~~l~----~~~tI~i~th~~~ 141 (219)
T 1s96_A 123 IRQKMP----HARSIFILPPSKI 141 (219)
T ss_dssp HHHHCT----TCEEEEEECSSHH
T ss_pred HHHHcc----CCEEEEEECCCHH
Confidence 998876 5899999999975
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.32 E-value=1.3e-11 Score=130.93 Aligned_cols=152 Identities=20% Similarity=0.182 Sum_probs=95.8
Q ss_pred eeeee-EEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 845 LVNVT-GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 845 L~~vs-~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
|+++. +.+++|++++|+|+||||||||++.|++ ..+ .+-++++.. .. .+. +.+
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~~---~~v~~i~~~-----------------~~----~~~-~~~ 62 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LSG---KKVAYVDTE-----------------GG----FSP-ERL 62 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HHC---SEEEEEESS-----------------CC----CCH-HHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-HcC---CcEEEEECC-----------------CC----CCH-HHH
Confidence 34444 3689999999999999999999999998 221 233444332 11 111 111
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHH--HHHHHHHHHHHhcC-CCEEEEeCCCCCCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTE--QRKRLTIAVELVAN-PSIVFMDEPTSGLD 1000 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~G--qrqrl~iA~aL~~~-p~illlDEPtsgLD 1000 (1085)
.- .... ..... +++++.+.+ ..+|++ +++++..+++++.+ |+++++||||+.+|
T Consensus 63 ~~--~~~~-~~~~~-------~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 63 VQ--MAET-RGLNP-------EEALSRFIL-------------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HH--HHHT-TTCCH-------HHHHHHEEE-------------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HH--HHHh-cCCCh-------HHHhhcEEE-------------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 10 0000 00111 122222211 123333 46788999999986 99999999999999
Q ss_pred HHH--------HHHHHHHHHHHHHC-CceEEEEecCccH------------HHHHhcCEEEEEecC
Q 001400 1001 ARA--------AAIVMRTVRNIVNT-GRTIVCTIHQPSI------------DIFESFDELLFMKRG 1045 (1085)
Q Consensus 1001 ~~~--------~~~i~~~l~~~~~~-g~tvi~~~H~~~~------------~~~~~~d~il~l~~g 1045 (1085)
+.. ...+++.|++++++ |.|||+++|.... .+...+|.+++|.+.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 733 34566667777654 8999999997541 355679999999864
No 204
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.31 E-value=4.4e-12 Score=134.61 Aligned_cols=77 Identities=12% Similarity=0.059 Sum_probs=57.5
Q ss_pred Cchhh--hhHHHHHHHHhCC-CcEeEEeCCCCCCCHHH--------HHHHHHHHHHHHhccCCEEEEEEecChh------
Q 001400 307 ISGGQ--KKRLTTGELLVGP-ARVLFMDEISNGLDSST--------TYQIIKYLKHSTRALDGTTVISLLQPAP------ 369 (1085)
Q Consensus 307 LSGGq--kqRvsia~al~~~-p~vlllDEptsgLD~~~--------~~~i~~~l~~~~~~~~~t~ii~~~q~~~------ 369 (1085)
.|+++ ++++..+++++.+ |+++++||||+++|... ..++++.|+++++..+.++++ ++|...
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~-~~h~~~~~~~~~ 163 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIV-INQVHFDSRTEM 163 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEE-EECSSSSCTTSS
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EeeEEEcCCCCc
Confidence 55554 5678888899986 99999999999999732 355667788887765656554 556543
Q ss_pred -------HHHhhcCeEEEecCC
Q 001400 370 -------EAYELFDDVILLSEG 384 (1085)
Q Consensus 370 -------~~~~~~D~ii~L~~G 384 (1085)
.+...+|.|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 567899999999754
No 205
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.31 E-value=4.6e-12 Score=128.89 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=64.6
Q ss_pred cccCchhhhhHHHHHHHHh----CCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEE
Q 001400 304 LKGISGGQKKRLTTGELLV----GPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVI 379 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~----~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii 379 (1085)
+..||||||||++||++++ .+|++++|||||+|||+.+...+.+.|+++.. +.+ +++++|+ ..+...+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~-~ivith~-~~~~~~ad~i~ 137 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQ-FIVITLR-DVMMANADKII 137 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSE-EEEECSC-HHHHTTCSEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCE-EEEEEec-HHHHHhCCEEE
Confidence 4579999999999999996 66899999999999999999999999998754 344 4445555 45778999998
Q ss_pred Ee--cCCeE
Q 001400 380 LL--SEGQI 386 (1085)
Q Consensus 380 ~L--~~G~i 386 (1085)
.+ .+|..
T Consensus 138 ~v~~~~g~s 146 (173)
T 3kta_B 138 GVSMRDGVS 146 (173)
T ss_dssp EEEEETTEE
T ss_pred EEEecCCEE
Confidence 66 45643
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.30 E-value=8.2e-15 Score=152.28 Aligned_cols=169 Identities=11% Similarity=0.064 Sum_probs=108.1
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVG 240 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~ 240 (1085)
|++++|+||||||||||+++|++.. +|.+.++|.++... ...++++|.....+.+|+++++.+.++...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~------~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL------DNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL-- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS------SSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc------CCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH--
Confidence 6899999999999999999999732 68899998765332 234677776654556788888876432110
Q ss_pred CchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccC---cccccC--chhhhhHH
Q 001400 241 SKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGD---EMLKGI--SGGQKKRL 315 (1085)
Q Consensus 241 ~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~---~~~~~L--SGGqkqRv 315 (1085)
..+ -....+...+. +..+.+ |+|+++++
T Consensus 71 --------------~~~---------------------------------~~~ild~~~~~~~~~~~~~~~~s~g~~~~~ 103 (189)
T 2bdt_A 71 --------------LAQ---------------------------------NDVVLDYIAFPDEAEALAQTVQAKVDDVEI 103 (189)
T ss_dssp --------------HTT---------------------------------CEEEEESCCCHHHHHHHHHHHHHHCSSEEE
T ss_pred --------------hcC---------------------------------CcEEEeeccCHHHHHHHHHHHHhcccCCCe
Confidence 000 00000000000 011234 89999998
Q ss_pred HHHH------HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecC-hhHHHhhcCeEEEecCCeEEE
Q 001400 316 TTGE------LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQP-APEAYELFDDVILLSEGQIVY 388 (1085)
Q Consensus 316 sia~------al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~-~~~~~~~~D~ii~L~~G~iv~ 388 (1085)
.++. +++.+++...+|+ +||+..... ++.++.+.. .+.+ ++..+|. .+++.+++|+|+ .+|+++.
T Consensus 104 ~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~-~~~~-ii~tsh~~~~~~e~~~~~i~--~~g~~~~ 175 (189)
T 2bdt_A 104 RFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGI-DERY-FYNTSHLQPTNLNDIVKNLK--TNPRFIF 175 (189)
T ss_dssp EEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTC-CTTS-EEECSSSCGGGHHHHHHHHH--HCGGGSC
T ss_pred EEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCC-CccE-EEeCCCCChhhHHHHHHHHh--hCCcEEE
Confidence 8877 8899998888884 899988777 777776643 2334 4445566 788999999999 9999999
Q ss_pred ecChhhH
Q 001400 389 QGPRVSV 395 (1085)
Q Consensus 389 ~G~~~~~ 395 (1085)
.|+++-+
T Consensus 176 ~~~~~~~ 182 (189)
T 2bdt_A 176 CMAGDPL 182 (189)
T ss_dssp C------
T ss_pred eecCCch
Confidence 9987644
No 207
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.28 E-value=2e-13 Score=137.18 Aligned_cols=78 Identities=18% Similarity=0.055 Sum_probs=65.6
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++++|+.+++|++++|+||||||||||+++|+|.+ +. +|+|.++|.++......+ .|++|+..++ .+||.
T Consensus 20 ~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~---~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~ltv~ 92 (158)
T 1htw_A 20 KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GH---QGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLADP 92 (158)
T ss_dssp HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TC---CSCCCCCTTTCEEEEEET--TEEEEEEECT-TCSCT
T ss_pred HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CC---CCeEEECCEeeeeeccCC--Ccceeccccc-cCCcH
Confidence 35899999999999999999999999999999999998 65 899999998764211111 2899998777 89999
Q ss_pred HHHHH
Q 001400 228 ETLDF 232 (1085)
Q Consensus 228 E~l~f 232 (1085)
|++.+
T Consensus 93 e~l~~ 97 (158)
T 1htw_A 93 EELEF 97 (158)
T ss_dssp THHHH
T ss_pred HHHHH
Confidence 99965
No 208
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.27 E-value=5.2e-13 Score=153.34 Aligned_cols=126 Identities=17% Similarity=0.290 Sum_probs=88.9
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCee-eeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGII-EGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~-~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
+|++++ +++|++++|+||||||||||+++|+|... +. +|.|.+.|.+.. ...+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~--~~~~g~I~~~e~~~e-~~~~~~~~~v~Q~~----------- 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN--QTKSYHIITIEDPIE-YVFKHKKSIVNQRE----------- 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH--HHSCCEEEEEESSCC-SCCCCSSSEEEEEE-----------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC--cCCCcEEEEecccHh-hhhccCceEEEeee-----------
Confidence 566665 78999999999999999999999999654 23 688877665543 12334456666631
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDAR 1002 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~ 1002 (1085)
+++. +..| +.+|+++|..+|++|++|||+ |++
T Consensus 191 ----------------------------~g~~-----------~~~~------~~~l~~~L~~~pd~illdE~~---d~e 222 (372)
T 2ewv_A 191 ----------------------------VGED-----------TKSF------ADALRAALREDPDVIFVGEMR---DLE 222 (372)
T ss_dssp ----------------------------BTTT-----------BSCS------HHHHHHHTTSCCSEEEESCCC---SHH
T ss_pred ----------------------------cCCC-----------HHHH------HHHHHHHhhhCcCEEEECCCC---CHH
Confidence 1111 0134 458999999999999999999 776
Q ss_pred HHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 1003 AAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 1003 ~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
+.. .+++. +..|.+|++|+|+.+ ..+.+||+
T Consensus 223 ~~~---~~l~~-~~~g~~vi~t~H~~~--~~~~~~rl 253 (372)
T 2ewv_A 223 TVE---TALRA-AETGHLVFGTLHTNT--AIDTIHRI 253 (372)
T ss_dssp HHH---HHHHH-HTTTCEEEECCCCCS--HHHHHHHH
T ss_pred HHH---HHHHH-HhcCCEEEEEECcch--HHHHHHHH
Confidence 643 34444 356999999999865 34445554
No 209
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.26 E-value=7.5e-13 Score=153.38 Aligned_cols=149 Identities=13% Similarity=0.114 Sum_probs=84.2
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
+.+++|+|+.| +|+||||||||||+++|+|...+... .|.+.+++.+ ....+.++|++|++..++.+||.
T Consensus 24 ~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~-~~~~~~~~~~---t~~~~~i~~v~q~~~~~~~Ltv~ 93 (418)
T 2qag_C 24 KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE-YPGPSHRIKK---TVQVEQSKVLIKEGGVQLLLTIV 93 (418)
T ss_dssp TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC-CCSCC--------CCEEEEEECC------CEEEEEE
T ss_pred EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC-CCCcccCCcc---ceeeeeEEEEEecCCcccceeee
Confidence 46999999998 99999999999999999998653211 2222221110 01124578999998888889999
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
||+.|+..... .. .. ...++++ + ..+
T Consensus 94 Dt~g~~~~~~~-~~---------------------~~--------------~~i~~~i-~-----------------~~~ 119 (418)
T 2qag_C 94 DTPGFGDAVDN-SN---------------------CW--------------QPVIDYI-D-----------------SKF 119 (418)
T ss_dssp ECC---------------------------------C--------------HHHHHHH-H-----------------HHH
T ss_pred echhhhhhccc-hh---------------------hH--------------HHHHHHH-H-----------------HHH
Confidence 99877532110 00 00 0001111 0 136
Q ss_pred chhhhhHHHHHHHHhCCCc---EeEEeCCC-CCCCHHHHHHHHHHHHHHHhccCCEEEEEEec
Q 001400 308 SGGQKKRLTTGELLVGPAR---VLFMDEIS-NGLDSSTTYQIIKYLKHSTRALDGTTVISLLQ 366 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~---vlllDEpt-sgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q 366 (1085)
+.++++|++|||+++.+|+ ++++|||| +|||+... +.++.+.. +..+|+++++
T Consensus 120 ~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 120 EDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp HHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 6778899999999999999 99999999 69998873 33344332 3455554443
No 210
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.26 E-value=6.4e-13 Score=138.01 Aligned_cols=141 Identities=14% Similarity=0.060 Sum_probs=88.6
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-CCCceEEEEccCCCCCCCCCHHHHHHHhhh
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-VPPRTSAYVSQQDWQVAEMTVRETLDFAGQ 235 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~ 235 (1085)
.+++|++++|+||||||||||+++|+|. +. .|.|.++|.++... ...+.++|++|+.. +.+||.|++.+.+.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~---~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PG---VPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SS---SCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cC---CCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH
Confidence 3679999999999999999999999997 22 79999999764322 12234578888654 45789999876532
Q ss_pred hcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHH
Q 001400 236 CQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRL 315 (1085)
Q Consensus 236 ~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRv 315 (1085)
....+.. .. . ++.++..+++...... +..+..+|+|++||+
T Consensus 78 ~~~~~~~-~~-------------~----------------------~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v 118 (191)
T 1zp6_A 78 RYAKEGY-FV-------------I----------------------LDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAE 118 (191)
T ss_dssp HHHHTSC-EE-------------E----------------------ECSCCCTTTTHHHHTT---CSCEEEEEEECCHHH
T ss_pred HHhccCC-eE-------------E----------------------EeccCcHHHHHHHHhc---CCCeEEEEecCCHHH
Confidence 1100000 00 0 0000000111111100 111235999999999
Q ss_pred HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 316 TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 316 sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
.++|++..+|+++ +|+.....+.+.++.
T Consensus 119 ~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~ 146 (191)
T 1zp6_A 119 AIERCLDRGGDSL--------SDPLVVADLHSQFAD 146 (191)
T ss_dssp HHHHHHTTCTTSC--------CCHHHHHHHHHHTTC
T ss_pred HHHHHHhcCCCcc--------CCHHHHHHHHHHHhc
Confidence 9999999999876 688777666665543
No 211
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.26 E-value=5.8e-14 Score=142.97 Aligned_cols=112 Identities=21% Similarity=0.147 Sum_probs=71.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC------CC-ceEE----EEccCCCCCCCCCHHHHH
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV------PP-RTSA----YVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~------~~-~~~~----yv~Q~d~~~~~lTV~E~l 230 (1085)
++++|+|+||||||||++.|+|.+.+.....|.|.++|+++.+.. .+ +.++ +++|+..++ +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998764233799999998854432 11 2355 788877654 000
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchh
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGG 310 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGG 310 (1085)
+ . .+. . ...+++++. .|+ ..||.+++ +||||
T Consensus 77 -------~--~-----~~~-----~------------------------a~l~~~i~~-~l~-g~dt~i~E----glSgG 107 (171)
T 2f1r_A 77 -------V--S-----EEE-----G------------------------NDLDWIYER-YLS-DYDLVITE----GFSKA 107 (171)
T ss_dssp -------C--C-----HHH-----H------------------------TCHHHHHHH-HTT-TCSEEEEE----SCGGG
T ss_pred -------C--C-----hhh-----h------------------------hCHHHHHHh-hCC-CCCEEEEC----CcCCC
Confidence 0 0 000 0 002333433 133 57899987 59999
Q ss_pred hhhHHHHHHHHhCCCcEe
Q 001400 311 QKKRLTTGELLVGPARVL 328 (1085)
Q Consensus 311 qkqRvsia~al~~~p~vl 328 (1085)
||||++|||+++++|++.
T Consensus 108 q~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 108 GKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp CCCEEEECSSGGGGGGGC
T ss_pred CCcEEEEEecccCCCccC
Confidence 999999999999999863
No 212
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.25 E-value=4.3e-14 Score=146.91 Aligned_cols=154 Identities=12% Similarity=0.027 Sum_probs=92.7
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
.+++|++++|+|+||||||||+++|+|.. ..|.|.++|.+.... ...+.++|++|... +..++.+++.+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~~----~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~ 78 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANLP----GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGR 78 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTCS----SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhcc----CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHH
Confidence 36789999999999999999999999973 258899998653221 11233566666533 356788888664321
Q ss_pred cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHH
Q 001400 930 RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMR 1009 (1085)
Q Consensus 930 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~ 1009 (1085)
....... ..++.+++..++..+... .. .+..+|+|++|+++++|++.++|+++ +|+...+.+++
T Consensus 79 ~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~-~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 79 YAKEGYF-----VILDGVVRPDWLPAFTAL--AR-PLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp HHHTSCE-----EEECSCCCTTTTHHHHTT--CS-CEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred HhccCCe-----EEEeccCcHHHHHHHHhc--CC-CeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 1000000 000000000111111100 00 12359999999999999999999876 68888877777
Q ss_pred HHHHHHHCCceEEEEec
Q 001400 1010 TVRNIVNTGRTIVCTIH 1026 (1085)
Q Consensus 1010 ~l~~~~~~g~tvi~~~H 1026 (1085)
.++.+...+..+|.++|
T Consensus 143 ~~~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 143 QFADLGAFEHHVLPVSG 159 (191)
T ss_dssp HTTCCGGGGGGEEECTT
T ss_pred HHhccCcccccEEECCC
Confidence 77665333334444443
No 213
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.25 E-value=2.4e-12 Score=147.34 Aligned_cols=78 Identities=22% Similarity=0.194 Sum_probs=55.9
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-CCceEEEEc-cCCCC--CCCCC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVS-QQDWQ--VAEMT 225 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~-Q~d~~--~~~lT 225 (1085)
+++++|+.+++|++++|+||||||||||+++|+|.+++. +|.|+++|..--... .++.++|++ |++.. ++..|
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~---~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t 240 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD---QRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVT 240 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT---SCEEEEESSSCCCCTTCSSEEEEECC----------CC
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC---ceEEEECCccccCccccCCEEEEeecCccccccccccC
Confidence 459999999999999999999999999999999999876 899999985311111 345688888 65432 23444
Q ss_pred HHHHH
Q 001400 226 VRETL 230 (1085)
Q Consensus 226 V~E~l 230 (1085)
++++|
T Consensus 241 ~~~~i 245 (361)
T 2gza_A 241 AATLL 245 (361)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44444
No 214
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.24 E-value=1.2e-12 Score=149.79 Aligned_cols=137 Identities=15% Similarity=0.123 Sum_probs=98.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC-ChhcccceEEEEc-cCCCCCCCCCHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK-RQETFARISGYCE-QNDIHSPGLTVLE 921 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~-~~~~~~~~~gy~~-Q~~~~~~~~tv~e 921 (1085)
+++++|+.+++|++++|+||||||||||+++|+|... +.+|.|.++|... .....++.++|++ |++..
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~--~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP--FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE-------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC--TTSCEEEEESSSCCCCTTCSSEEEEECC-------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC--CCceEEEECCccccCccccCCEEEEeecCcccc--------
Confidence 3489999999999999999999999999999999876 3589999998532 1122456678887 54321
Q ss_pred HHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Q 001400 922 SLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 922 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~ 1001 (1085)
+++.+..++-.|+.++..+|+.+++|||+.
T Consensus 234 ----------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~---- 263 (361)
T 2gza_A 234 ----------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG---- 263 (361)
T ss_dssp ---------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS----
T ss_pred ----------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH----
Confidence 011222355667777778899999999986
Q ss_pred HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEecC
Q 001400 1002 RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMKRG 1045 (1085)
Q Consensus 1002 ~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~~g 1045 (1085)
..+.+.++.+.....|++.++|..+ ....+||+..+..+
T Consensus 264 ---~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 264 ---GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQ 302 (361)
T ss_dssp ---THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTT
T ss_pred ---HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhc
Confidence 2355667766433457899999965 55678998888765
No 215
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.24 E-value=8.3e-15 Score=152.24 Aligned_cols=168 Identities=15% Similarity=0.153 Sum_probs=104.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCc
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSE 934 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 934 (1085)
|++++|+||||||||||+++|++. ..|.+.++|.+.... ...|+++|.....+..++++++.+.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~-----~~g~~~i~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--- 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQ-----LDNSAYIEGDIINHM---VVGGYRPPWESDELLALTWKNITDLTVNFL--- 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH-----SSSEEEEEHHHHHTT---CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH---
T ss_pred CeEEEEECCCCCcHHHHHHHHhcc-----cCCeEEEcccchhhh---hccccccCccchhHHHHHHHHHHHHHHHHH---
Confidence 689999999999999999999972 347888988643211 124566665433344577777765432110
Q ss_pred ccHHHHHHHHHHHHHHcCCCcccccccCC---CCCCCC--CHHHHHHHHHHH------HHhcCCCEEEEeCCCCCCCHHH
Q 001400 935 IELETQRAFVEEVMELVELTSLSGALIGL---PGINGL--STEQRKRLTIAV------ELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 935 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---~~~~~L--S~Gqrqrl~iA~------aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
. -+...+.+..... .....+ |+|++|++.++. +++.+|+...+|+ ++|+..
T Consensus 71 --------------~-~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~ 132 (189)
T 2bdt_A 71 --------------L-AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERC 132 (189)
T ss_dssp --------------H-TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGG
T ss_pred --------------h-cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHH
Confidence 0 0000000000000 000123 777777877777 8888898888884 899988
Q ss_pred HHHHHHHHHHHHHCCceEEEEecC-ccHHHHHhcCEEEEEecCcEEEEecCCCC
Q 001400 1004 AAIVMRTVRNIVNTGRTIVCTIHQ-PSIDIFESFDELLFMKRGGELIYAGPLGS 1056 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~g~tvi~~~H~-~~~~~~~~~d~il~l~~gG~~~~~g~~~~ 1056 (1085)
... ++.++.+...+.+||.++|. ++ ++.+.+|+|+ +.|+++..|+...
T Consensus 133 ~~~-~~~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~---~~g~~~~~~~~~~ 181 (189)
T 2bdt_A 133 LEL-VEEFESKGIDERYFYNTSHLQPT-NLNDIVKNLK---TNPRFIFCMAGDP 181 (189)
T ss_dssp GHH-HHHHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH---HCGGGSCC-----
T ss_pred HHH-HHHHhhcCCCccEEEeCCCCChh-hHHHHHHHHh---hCCcEEEeecCCc
Confidence 888 88888775567899999998 76 5778899998 4688988887643
No 216
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.24 E-value=3.5e-15 Score=168.16 Aligned_cols=155 Identities=16% Similarity=0.135 Sum_probs=96.1
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCCC------CeeeeEEEEcCccCChh------------------cccceEEEE---c
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKTG------GIIEGDIYISGYPKRQE------------------TFARISGYC---E 908 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~~------~~~~G~i~i~g~~~~~~------------------~~~~~~gy~---~ 908 (1085)
++++|+|+||||||||++.|.|...+ .+..|+|.|||.++... .+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 58999999999999999999986521 13578999998765321 233445555 4
Q ss_pred cCCCCCCCCCHHHHHHHhhhhcCCCcc---cHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 909 QNDIHSPGLTVLESLLFSAWLRLPSEI---ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 909 Q~~~~~~~~tv~e~l~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
|+....+..++.|+..++......... ........++.++..+++.+..+... ++|+||+||+..+++++.
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill~ 158 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILLT 158 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEEE
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEEE
Confidence 655545566666665432100000000 00000000111222223333322221 589999999999899999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCc
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1028 (1085)
+|+++ ||| ..+.+.|+++. .+.||++++|++
T Consensus 159 k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~ 189 (318)
T 1nij_A 159 KTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGD 189 (318)
T ss_dssp CTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSC
T ss_pred CcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccC
Confidence 99987 998 67888888864 689999999975
No 217
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.20 E-value=2.8e-12 Score=142.02 Aligned_cols=135 Identities=16% Similarity=0.230 Sum_probs=84.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1085)
+++.+++|.||+|||||||.+.|++.+.+ .| .. .+.+.+|+|++.+++. ++++|+.++..-.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~----~g------~~------~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~ 91 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME----KY------GG------EKSIGYASIDDFYLTH-EDQLKLNEQFKNNK 91 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH----HH------GG------GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh----cC------CC------CceEEEeccccccCCh-HHHHHHhccccccc
Confidence 46889999999999999999999999864 22 00 2345666999988764 89999987531000
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc----cccccccCcccccCchhhhhH
Q 001400 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT----CADTLVGDEMLKGISGGQKKR 314 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~----~~dt~vg~~~~~~LSGGqkqR 314 (1085)
.-.. .+....-|.+ .....++.+.-.. .....+. .....+||||+||
T Consensus 92 l~~~-------------~g~p~a~d~~---------------~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R 142 (290)
T 1odf_A 92 LLQG-------------RGLPGTHDMK---------------LLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDR 142 (290)
T ss_dssp GGSS-------------SCSTTSBCHH---------------HHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEE
T ss_pred hhhh-------------ccCcchhHHH---------------HHHHHHHHhhccCccccCcceeec-cCccccCCccccc
Confidence 0000 0000001111 1233444443220 0111122 2335799999999
Q ss_pred HHHH--HHHhCCCcEeEEeCCCCCCCHHH
Q 001400 315 LTTG--ELLVGPARVLFMDEISNGLDSST 341 (1085)
Q Consensus 315 vsia--~al~~~p~vlllDEptsgLD~~~ 341 (1085)
+++| +++ +|+|+|+|||++++|+..
T Consensus 143 ~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 143 CPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cccccceEc--CCCEEEEeCccccCCccc
Confidence 9997 555 999999999999999853
No 218
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.19 E-value=5e-14 Score=162.08 Aligned_cols=165 Identities=8% Similarity=0.023 Sum_probs=94.0
Q ss_pred eeeeEEEeC--CeEEEEEccCCCChhHHHhhhhCCCCCCeee----eEEEEcCccCChhcccceEEEEccCCCCCCCCCH
Q 001400 846 VNVTGAFRP--GVLTALVGVSGAGKTTLMDVLAGRKTGGIIE----GDIYISGYPKRQETFARISGYCEQNDIHSPGLTV 919 (1085)
Q Consensus 846 ~~vs~~i~~--Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~----G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv 919 (1085)
+.|++.|++ |++++|+|+||||||||+++|+|... +.. |.|++++... ..+........
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~--~~~~~e~G~i~i~~~~~-------------~~~~~~~~~~~ 223 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN--TTSAWEYGREFVFEKLG-------------GDEQAMQYSDY 223 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT--CEEECCTTHHHHHHSSS-------------SCTTSSCTTTH
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC--CCcchhhHHHHHHhhcC-------------CCcccCChhHH
Confidence 368888999 99999999999999999999999765 345 6655532100 00000111112
Q ss_pred HHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCC--CcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCCEEEEeC--
Q 001400 920 LESLLFSAWLRLPSEIELETQRAFVEEVMELVEL--TSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPSIVFMDE-- 994 (1085)
Q Consensus 920 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~illlDE-- 994 (1085)
+++.+... . .......+.+.+.+ .+..+.. ...+|+|++|+..+++++. .+|+++||||
T Consensus 224 -~~I~~~~q---------~-~~~~~~t~~~nl~~~~~~~~~~~-----~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~ 287 (365)
T 1lw7_A 224 -PQMALGHQ---------R-YIDYAVRHSHKIAFIDTDFITTQ-----AFCIQYEGKAHPFLDSMIKEYPFDVTILLKNN 287 (365)
T ss_dssp -HHHHHHHH---------H-HHHHHHHHCSSEEEESSCHHHHH-----HHHHHHHSCCCHHHHHHHHHSCCSEEEEEECC
T ss_pred -HHHHHHHH---------H-HHHHHHhccCCEEEEeCCchHHH-----HHHHHHcCCCCHHHHHHHhhcCCCEEEECCCC
Confidence 33332210 0 00000000000000 0000000 0135667777888888774 5999999999
Q ss_pred -CC------CCCCHHHHHHHHHHHHHHHH-CCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 995 -PT------SGLDARAAAIVMRTVRNIVN-TGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 995 -Pt------sgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
|+ +++|+..+..+.+.++++.+ .|.+||+++|. + .....++++.+++
T Consensus 288 ~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 288 TEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp CC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 65 68999999999999988754 48999999985 2 2344455555443
No 219
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.19 E-value=2.9e-12 Score=147.60 Aligned_cols=158 Identities=15% Similarity=0.122 Sum_probs=97.9
Q ss_pred cccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC---CCCceEEEEccCCCCCCCCC
Q 001400 151 LDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF---VPPRTSAYVSQQDWQVAEMT 225 (1085)
Q Consensus 151 L~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~d~~~~~lT 225 (1085)
|+++|+.+++|++ ++|+||||||||||+++|+|.. ..| .++... ...+.++|++|++.+++.+|
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~-----l~g------~~~~~~~~~~~~~~i~~v~Q~~~l~~~lt 98 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK-----FEG------EPATHTQPGVQLQSNTYDLQESNVRLKLT 98 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC-----C-------------CCSSCEEEEEEEEEEC--CEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc-----ccC------CcCCCCCccceEeeEEEEeecCccccccc
Confidence 9999999999999 9999999999999999999973 122 222111 11346899999988888999
Q ss_pred HHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHh-CCcc----ccccc--
Q 001400 226 VRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKIL-GLDT----CADTL-- 298 (1085)
Q Consensus 226 V~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l-gL~~----~~dt~-- 298 (1085)
|.||+.|+.... . ..+.. .+..++ ....+..|... ++.. ..|+.
T Consensus 99 v~D~~~~g~~~~----~-----~~~~~----------~i~~~i----------~~q~~~~L~e~~~i~r~l~~~~d~rVh 149 (427)
T 2qag_B 99 IVSTVGFGDQIN----K-----EDSYK----------PIVEFI----------DAQFEAYLQEELKIRRVLHTYHDSRIH 149 (427)
T ss_dssp EEEEECCCC-CC----H-----HHHSH----------HHHHHH----------HHHHHHHHHHC--CCCCCCCSCC--CC
T ss_pred hhhhhhhhhccc----c-----chhhh----------HHHHHH----------HHHHHHHHHHHHhhhhhhccccccccc
Confidence 999997753211 0 00000 000011 11233344433 4431 12222
Q ss_pred --cc--CcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 299 --VG--DEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 299 --vg--~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
+. .+...+|+-.+ +.|+++|..+++|+++|||+..|.......+.+.+++
T Consensus 150 ~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~ 203 (427)
T 2qag_B 150 VCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITS 203 (427)
T ss_dssp EEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHH
Confidence 11 01113566655 7899999999999999999999999988888888886
No 220
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.19 E-value=1.3e-11 Score=133.20 Aligned_cols=152 Identities=18% Similarity=0.234 Sum_probs=84.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCC--CCC---CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGR--KTG---GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~--~~~---~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
+-+++|++++|+||||||||||++.|++. ... +...|.+++++.... ...+-..
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~---------------------~~~~~~~ 77 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTF---------------------RPERLLA 77 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC---------------------CHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCc---------------------CHHHHHH
Confidence 35789999999999999999999999982 321 113567777765310 0000000
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH-HHHHHHHHh--cCCCEEEEeCCCCCCCH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK-RLTIAVELV--ANPSIVFMDEPTSGLDA 1001 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq-rl~iA~aL~--~~p~illlDEPtsgLD~ 1001 (1085)
....+. ... +++++.+.+ . ...+..+.. .+.-+.+++ .+|+++++|||++.+|+
T Consensus 78 ~~~~~g----~~~-------~~~~~~~~~-------~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 78 VAERYG----LSG-------SDVLDNVAY-------A-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp HHHHTT----CCH-------HHHHHTEEE-------E-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred HHHHcC----CCH-------HHHhhCeEE-------E-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 000000 000 112221100 0 124444433 233333443 58999999999999998
Q ss_pred H-------H-----HHHHHHHHHHHHH-CCceEEEEecCccHH------------------HHHhcCEEEEEecC
Q 001400 1002 R-------A-----AAIVMRTVRNIVN-TGRTIVCTIHQPSID------------------IFESFDELLFMKRG 1045 (1085)
Q Consensus 1002 ~-------~-----~~~i~~~l~~~~~-~g~tvi~~~H~~~~~------------------~~~~~d~il~l~~g 1045 (1085)
. + ...+++.|+++++ .|.|||+++|..... +...+|.+++|.++
T Consensus 135 ~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 135 DYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 5 3 3445566666654 499999999964311 11168999999864
No 221
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.18 E-value=3.9e-13 Score=141.65 Aligned_cols=69 Identities=10% Similarity=-0.070 Sum_probs=54.3
Q ss_pred HHHHHHHhCCcccccccccCcccccCchhhhhH-HHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 282 VEYIMKILGLDTCADTLVGDEMLKGISGGQKKR-LTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 282 ~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqR-vsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
+...++..+++.. .+++ ....+|+||||| +..+++++.+|+.+++|||||++|.....++++.|.+...
T Consensus 129 ~~~~~~~~~~~~~---~v~n-K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 129 MIEWAVDSNIAVL---VLLT-KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp HHHHHHHTTCCEE---EEEE-CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCCeE---EEEe-cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 3444556666542 2232 234699999999 8999999999999999999999999999999999988764
No 222
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.17 E-value=1.2e-12 Score=147.90 Aligned_cols=122 Identities=17% Similarity=0.101 Sum_probs=80.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC-CCCceeeEEEEC-CccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG-HHLQVSGKITYN-GHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~-~~~~~~G~i~~~-G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
-+++++.. .+|++++|+||||||||||+|+|+|... +. +|+|.++ |.+... ...+.++|++|+..++++.||+
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~---~G~I~~~~G~g~~t-t~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEIL---TNDVSNVSGLGQHT-TTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCC---CC--------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccc---cCCccccCCCCccc-eEEEEEEEECCCCEecCcccHH
Confidence 35666664 4799999999999999999999999887 65 8999987 755432 2346789999999889999998
Q ss_pred HHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 228 ETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 228 E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
|+ .. .+.. ..+ ....++++++.+|+.+..|... .++
T Consensus 280 e~---~l--~~l~----------~~e------------------------~~~~~~e~l~~~gl~~f~~~~~-----~~l 315 (358)
T 2rcn_A 280 EF---GL--WHLE----------PEQ------------------------ITQGFVEFHDYLGHCKYRDCKH-----DAD 315 (358)
T ss_dssp TC---CC--CCCC----------HHH------------------------HHHTSGGGGGGTTCSSSTTCCS-----SSC
T ss_pred Hh---hh--cCCC----------HHH------------------------HHHHHHHHHHHcCCchhcCCCc-----ccC
Confidence 83 11 1100 000 0112445667788877666544 469
Q ss_pred chhhhhHHHHHHHH
Q 001400 308 SGGQKKRLTTGELL 321 (1085)
Q Consensus 308 SGGqkqRvsia~al 321 (1085)
| ||+||++||+++
T Consensus 316 S-G~~~r~ala~gl 328 (358)
T 2rcn_A 316 P-GCAIREAVENGA 328 (358)
T ss_dssp T-TCHHHHHHHHTS
T ss_pred C-HHHHHHHHHhcC
Confidence 9 999999999864
No 223
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.17 E-value=2.7e-13 Score=147.15 Aligned_cols=156 Identities=19% Similarity=0.191 Sum_probs=94.0
Q ss_pred CCeEEEEeCCCCCChhHHHHHHH---hhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALA---GRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQC 236 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~---G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~ 236 (1085)
++++++|+||||||||||+++|+ |...+ .+|+|.++|.+... ...+.+.+++|+...++..|+.+++......
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999 76544 37888887754211 0112345566777778888999999764321
Q ss_pred --------cCCCCchhhhHHHHHHHHHhC-CCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 237 --------QGVGSKYDMITELARREKIAG-IKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 237 --------~~~~~~~~~~~~~~~~e~~~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
.+..... . ..+.... ..++ .-.+ + +.-.+.++ .... ++.+..|
T Consensus 102 ~~~~~~il~g~~~~~---~---~~~~l~~~~~~~--~vi~-----L-----~~~~~~~l-----~r~~-----~r~~~~l 153 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTL---G---QAEALDKICEVD--LVIS-----L-----NIPFETLK-----DRLS-----RRWIHPP 153 (246)
T ss_dssp CTTSCEEEESCCCSH---H---HHHHHHTTCCCC--EEEE-----E-----ECCHHHHH-----HHHH-----TEEEETT
T ss_pred cCCCeEEEECCCCCH---H---HHHHHHhhcCCC--EEEE-----E-----ECCHHHHH-----HHHH-----cCCCcCC
Confidence 1110000 0 0000000 0000 0000 0 00000001 1111 2234469
Q ss_pred chhhhhHHHHHHHH-hCCCcEeEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q 001400 308 SGGQKKRLTTGELL-VGPARVLFMD----EISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 308 SGGqkqRvsia~al-~~~p~vlllD----EptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
|| |+ +++ +.+|++++|| |||++||..+...+.+.++.+.+
T Consensus 154 Sg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 154 SG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 99 66 677 9999999999 99999999999999999987754
No 224
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.17 E-value=3.4e-11 Score=138.62 Aligned_cols=77 Identities=23% Similarity=0.359 Sum_probs=67.2
Q ss_pred CCCCHHHHHHH------HHHHHHhcC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEE
Q 001400 967 NGLSTEQRKRL------TIAVELVAN-PSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDEL 1039 (1085)
Q Consensus 967 ~~LS~Gqrqrl------~iA~aL~~~-p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~i 1039 (1085)
..||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++. .+.+||+|||++. +...+|++
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~th~~~--~~~~~d~~ 355 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK-SIPQMIIITHHRE--LEDVADVI 355 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCC-SCSEEEEEESCGG--GGGGCSEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhc-cCCeEEEEEChHH--HHhhCCEE
Confidence 36999999988 567899999 99999999999999999999999999863 4579999999975 46789999
Q ss_pred EEEecCc
Q 001400 1040 LFMKRGG 1046 (1085)
Q Consensus 1040 l~l~~gG 1046 (1085)
++|.+.|
T Consensus 356 ~~l~k~~ 362 (371)
T 3auy_A 356 INVKKDG 362 (371)
T ss_dssp EEEEESS
T ss_pred EEEEecC
Confidence 9997544
No 225
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.16 E-value=1e-11 Score=142.50 Aligned_cols=132 Identities=22% Similarity=0.264 Sum_probs=92.8
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHH
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRE 228 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E 228 (1085)
.+|++++ +++|++++|+|||||||||||++|+|.+++. .+|+|.+.|.++. ...+..++||+|...
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e-~~~~~~~~~v~Q~~~--------- 191 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQT--KSYHIITIEDPIE-YVFKHKKSIVNQREV--------- 191 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHH--SCCEEEEEESSCC-SCCCCSSSEEEEEEB---------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcC--CCcEEEEecccHh-hhhccCceEEEeeec---------
Confidence 3678876 8999999999999999999999999998652 1699987776553 233455677777420
Q ss_pred HHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 229 TLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 229 ~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
|++ . ..+
T Consensus 192 -------------------------------------------------------------g~~----~-------~~~- 198 (372)
T 2ewv_A 192 -------------------------------------------------------------GED----T-------KSF- 198 (372)
T ss_dssp -------------------------------------------------------------TTT----B-------SCS-
T ss_pred -------------------------------------------------------------CCC----H-------HHH-
Confidence 000 0 123
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
+.+|+++|..+|+++++|||+ |..+... .++. +. .+.+ +++++|.. ++.+.+|+++.|.
T Consensus 199 -----~~~l~~~L~~~pd~illdE~~---d~e~~~~---~l~~-~~-~g~~-vi~t~H~~-~~~~~~~rl~~l~ 257 (372)
T 2ewv_A 199 -----ADALRAALREDPDVIFVGEMR---DLETVET---ALRA-AE-TGHL-VFGTLHTN-TAIDTIHRIVDIF 257 (372)
T ss_dssp -----HHHHHHHTTSCCSEEEESCCC---SHHHHHH---HHHH-HT-TTCE-EEECCCCC-SHHHHHHHHHHTS
T ss_pred -----HHHHHHHhhhCcCEEEECCCC---CHHHHHH---HHHH-Hh-cCCE-EEEEECcc-hHHHHHHHHHHhc
Confidence 468999999999999999999 7766443 3443 22 3444 55566664 4778888887764
No 226
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.16 E-value=7.1e-14 Score=151.71 Aligned_cols=144 Identities=17% Similarity=0.251 Sum_probs=95.7
Q ss_pred CCeEEEEEccCCCChhHHHhhhh---CCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh--
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW-- 928 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~-- 928 (1085)
++++++|+|+||||||||+++|+ |... +..|+|.++|.+... ...+.+++++|+..+.+..++.+++.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~--~~~G~i~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~ 102 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH--LSSGHFLRENIKAST-EVGEMAKQYIEKSLLVPDHVITRLMMSELENR 102 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC--EEHHHHHHHHHHTTC-HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE--ecHHHHHHHHHhcCC-hHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence 47899999999999999999999 8765 567888777654321 122334556777777788899999875321
Q ss_pred ------hc-CCCcccHHHHHHHHHHHHHHcCC--------------CcccccccCCCCCCCCCHHHHHHHHHHHHH-hcC
Q 001400 929 ------LR-LPSEIELETQRAFVEEVMELVEL--------------TSLSGALIGLPGINGLSTEQRKRLTIAVEL-VAN 986 (1085)
Q Consensus 929 ------~~-~~~~~~~~~~~~~~~~~l~~~~l--------------~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL-~~~ 986 (1085)
+. .+.. . ..++.+.+.... ..+.+.. +..||| |+ ++| +.+
T Consensus 103 ~~~~~il~g~~~~---~---~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~-----~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 103 RGQHWLLDGFPRT---L---GQAEALDKICEVDLVISLNIPFETLKDRLSRRW-----IHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp TTSCEEEESCCCS---H---HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE-----EETTTT----EE---EETTTSC
T ss_pred CCCeEEEECCCCC---H---HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCC-----CcCCCC----Cc---cccccCC
Confidence 11 1111 1 111222111111 1111111 235888 55 677 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHHHHCC
Q 001400 987 PSIVFMD----EPTSGLDARAAAIVMRTVRNIVNTG 1018 (1085)
Q Consensus 987 p~illlD----EPtsgLD~~~~~~i~~~l~~~~~~g 1018 (1085)
|++++|| |||++||..+...+.+.++++.+.+
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~~~ 200 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKDVA 200 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHHhH
Confidence 9999999 9999999999999999999886543
No 227
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.15 E-value=5.1e-13 Score=134.21 Aligned_cols=81 Identities=22% Similarity=0.118 Sum_probs=66.0
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLT 918 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~t 918 (1085)
+++..++++|||++++|++++|+||||||||||+++|+|.. + .+|+|.++|+++......+ .|++|+..++ .+|
T Consensus 17 ~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~--~~G~V~~~g~~i~~~~~~~--~~~~q~~~l~-~lt 90 (158)
T 1htw_A 17 FGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-G--HQGNVKSPTYTLVEEYNIA--GKMIYHFDLY-RLA 90 (158)
T ss_dssp HHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-T--CCSCCCCCTTTCEEEEEET--TEEEEEEECT-TCS
T ss_pred HHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-C--CCCeEEECCEeeeeeccCC--Ccceeccccc-cCC
Confidence 34456889999999999999999999999999999999976 3 4799999998764221111 2789988888 899
Q ss_pred HHHHHHH
Q 001400 919 VLESLLF 925 (1085)
Q Consensus 919 v~e~l~~ 925 (1085)
+.|++.+
T Consensus 91 v~e~l~~ 97 (158)
T 1htw_A 91 DPEELEF 97 (158)
T ss_dssp CTTHHHH
T ss_pred cHHHHHH
Confidence 9999965
No 228
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.15 E-value=4.4e-12 Score=147.74 Aligned_cols=152 Identities=13% Similarity=0.129 Sum_probs=100.4
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hc--ccceEEEEccCCCCCCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ET--FARISGYCEQNDIHSPG 916 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~--~~~~~gy~~Q~~~~~~~ 916 (1085)
+++||++++|++++|+|+||||||||+++|+|... +..|+|.++|.+... .. .++.++|++|+....+.
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~--~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~ 361 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE--QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSA 361 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh--hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHH
Confidence 37889999999999999999999999999999754 346899998766432 11 24568999999888888
Q ss_pred CCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh-cCCC-EEEEeC
Q 001400 917 LTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV-ANPS-IVFMDE 994 (1085)
Q Consensus 917 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~-~~p~-illlDE 994 (1085)
.++++++.+..... .+. -+++..|+.+.. ..+-..-+|++.+++++. ..|. +||...
T Consensus 362 ~tV~e~l~~a~~~~--~Dv----------VLIDTaGrl~~~---------~~lm~EL~kiv~iar~l~~~~P~evLLvLD 420 (503)
T 2yhs_A 362 SVIFDAIQAAKARN--IDV----------LIADTAGRLQNK---------SHLMEELKKIVRVMKKLDVEAPHEVMLTID 420 (503)
T ss_dssp HHHHHHHHHHHHTT--CSE----------EEECCCCSCCCH---------HHHHHHHHHHHHHHHTTCTTCSSEEEEEEE
T ss_pred HHHHHHHHHHHhcC--CCE----------EEEeCCCccchh---------hhHHHHHHHHHHHHHHhccCCCCeeEEEec
Confidence 89999998753211 000 001111111100 012223457788888663 4574 555555
Q ss_pred CCCCCCHHHHHHHHHHHHHHHH-CCceEEEEec
Q 001400 995 PTSGLDARAAAIVMRTVRNIVN-TGRTIVCTIH 1026 (1085)
Q Consensus 995 PtsgLD~~~~~~i~~~l~~~~~-~g~tvi~~~H 1026 (1085)
||+|.|.. +.++.+.+ -|.|.|++||
T Consensus 421 attGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 421 ASTGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred CcccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 88886654 33444433 4899999999
No 229
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.13 E-value=2.3e-11 Score=131.12 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=27.5
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+-+++|++++|+||||||||||++.|++.
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 57999999999999999999999999994
No 230
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.13 E-value=1.1e-11 Score=140.02 Aligned_cols=120 Identities=18% Similarity=0.125 Sum_probs=81.7
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc-CccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS-GYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~-g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++++. .+|++++|+|+||||||||+++|+|.... +..|+|.++ |.+.. .+..+.++|++|+..+++..+++|+
T Consensus 208 ~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~-~~~G~I~~~~G~g~~-tt~~~~i~~v~q~~~l~dtpgv~e~--- 281 (358)
T 2rcn_A 208 PLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE-ILTNDVSNVSGLGQH-TTTAARLYHFPHGGDVIDSPGVREF--- 281 (358)
T ss_dssp HHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC-CCCC--------------CCCEEEECTTSCEEEECHHHHTC---
T ss_pred HHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc-cccCCccccCCCCcc-ceEEEEEEEECCCCEecCcccHHHh---
Confidence 34433 37999999999999999999999996541 357999887 65542 2345678999999888888888884
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVEL 983 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL 983 (1085)
.. . .....+....+.++++.+++..+.+... .+|| ||+||++||+++
T Consensus 282 ~l--~---~l~~~e~~~~~~e~l~~~gl~~f~~~~~-----~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 GL--W---HLEPEQITQGFVEFHDYLGHCKYRDCKH-----DADP-GCAIREAVENGA 328 (358)
T ss_dssp CC--C---CCCHHHHHHTSGGGGGGTTCSSSTTCCS-----SSCT-TCHHHHHHHHTS
T ss_pred hh--c---CCCHHHHHHHHHHHHHHcCCchhcCCCc-----ccCC-HHHHHHHHHhcC
Confidence 11 1 2233444556778888888887777654 4799 999999999875
No 231
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.12 E-value=1.1e-13 Score=156.99 Aligned_cols=166 Identities=14% Similarity=0.157 Sum_probs=105.7
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cccceEEEEccCCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARISGYCEQNDIH 913 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~~gy~~Q~~~~ 913 (1085)
...+|+++|+++++|++++|+|+||||||||+++|+|... +..|+|.+.|.+.... ..++.++|++|++..
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~--~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT--AAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH--HTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh--hCCCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 3457889999999999999999999999999999999654 3468899988765321 235568999998877
Q ss_pred CCCC------------CHHHHHHHh-----------------------------hhhcCCCcccHHHHHHHHHHHHHHcC
Q 001400 914 SPGL------------TVLESLLFS-----------------------------AWLRLPSEIELETQRAFVEEVMELVE 952 (1085)
Q Consensus 914 ~~~~------------tv~e~l~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 952 (1085)
++.. +++|.+... ..+..+.. ..........+++...
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~--~~~~~~i~~~i~~~~~ 196 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGA--GDELQGIKKGIFELAD 196 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC--------CCTTHHHHCS
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCC--cccHHHHHHHHhcccc
Confidence 6431 233332110 00000000 0000000001122222
Q ss_pred CCcccccccCCCCCCCCCHHHHHHHHHHHHHhc------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 953 LTSLSGALIGLPGINGLSTEQRKRLTIAVELVA------NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 953 l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~------~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
+.-+ ++.... ....+|+|++|++..|++++. +|++++ ||++|......+++.|.++..
T Consensus 197 ivvl-NK~Dl~-~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 197 MIAV-NKADDG-DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EEEE-ECCSTT-CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EEEE-Echhcc-CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 2111 221100 113479999999999999987 688887 999999999999999988753
No 232
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.11 E-value=9.1e-11 Score=137.89 Aligned_cols=76 Identities=18% Similarity=0.230 Sum_probs=68.5
Q ss_pred CCCCHHHHHHHHHHHHHh----cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEE
Q 001400 967 NGLSTEQRKRLTIAVELV----ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~----~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l 1042 (1085)
..||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+.+.++|+|||++ ...+.||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 469999999999999999 58999999999999999999999999999865578999999995 467789999998
Q ss_pred ec
Q 001400 1043 KR 1044 (1085)
Q Consensus 1043 ~~ 1044 (1085)
..
T Consensus 410 ~~ 411 (430)
T 1w1w_A 410 YR 411 (430)
T ss_dssp EE
T ss_pred EE
Confidence 64
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.11 E-value=1.4e-11 Score=143.64 Aligned_cols=81 Identities=15% Similarity=0.118 Sum_probs=68.3
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------C--CCceEEEEccCCCCC
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------V--PPRTSAYVSQQDWQV 221 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~--~~~~~~yv~Q~d~~~ 221 (1085)
-+++|+.+++|++++|+||||||||||+++|+|++.+. +|+|.++|.+.... . .++.++|++|+...+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~---~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQ---GKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhc---CCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 46899999999999999999999999999999998765 89999987665321 0 134689999998878
Q ss_pred CCCCHHHHHHHhh
Q 001400 222 AEMTVRETLDFAG 234 (1085)
Q Consensus 222 ~~lTV~E~l~f~~ 234 (1085)
+.+||++++.++.
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8899999998864
No 234
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.11 E-value=5.5e-11 Score=118.33 Aligned_cols=44 Identities=11% Similarity=0.215 Sum_probs=36.9
Q ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCce-EEEEecCc
Q 001400 984 VANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRT-IVCTIHQP 1028 (1085)
Q Consensus 984 ~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~t-vi~~~H~~ 1028 (1085)
+.+|++|++|||++ +|...+..+.++++.+.++|++ +|+++|.+
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~~ 125 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEYT 125 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESSC
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCCC
Confidence 45799999999998 6655588899999998877888 88899854
No 235
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=1.6e-12 Score=147.44 Aligned_cols=182 Identities=13% Similarity=0.067 Sum_probs=109.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCC-------CCCceEEEEccCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEF-------VPPRTSAYVSQQDWQ 220 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~-------~~~~~~~yv~Q~d~~ 220 (1085)
..+|+++|+.+++|++++|+||||||||||+++|+|.+.+. +|+|.+.|.+.... ..++.++|++|++..
T Consensus 42 ~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~---~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~ 118 (337)
T 2qm8_A 42 RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAA---GHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNA 118 (337)
T ss_dssp HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTE
T ss_pred HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhC---CCEEEEEEEcCcccccccchHHHhhhheeeccCccc
Confidence 35899999999999999999999999999999999998765 89999998776322 224568999999877
Q ss_pred CCCC------------CHHHHHHHh-h-h-----hcCCCCchhhhHHHHHHHHHhCC----CCCchHHHHHHHhhhcCcc
Q 001400 221 VAEM------------TVRETLDFA-G-Q-----CQGVGSKYDMITELARREKIAGI----KPDEDLDIFMKSFALGGQK 277 (1085)
Q Consensus 221 ~~~l------------TV~E~l~f~-~-~-----~~~~~~~~~~~~~~~~~e~~~~~----~~~~d~~~~~~~~~~~~~~ 277 (1085)
+... +++|.+... . . ...+|-... +.. .+...+. .....-+. .+ .
T Consensus 119 ~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~---~~~-v~~~~d~vl~v~d~~~~~~-~~-------~ 186 (337)
T 2qm8_A 119 FIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQS---ETA-VADLTDFFLVLMLPGAGDE-LQ-------G 186 (337)
T ss_dssp EEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSC---HHH-HHTTSSEEEEEECSCC--------------
T ss_pred ccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcc---hhh-HHhhCCEEEEEEcCCCccc-HH-------H
Confidence 6532 233333110 0 0 001111100 000 0000000 00000000 00 0
Q ss_pred hhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHHhC------CCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 278 TSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVG------PARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 278 ~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~------~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
....+..+...+.+ +..|.. ....+|+|++|++..+.+++. .|++++ +|++|......+++.|.+
T Consensus 187 i~~~i~~~~~ivvl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~ 257 (337)
T 2qm8_A 187 IKKGIFELADMIAV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIED 257 (337)
T ss_dssp CCTTHHHHCSEEEE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHH
T ss_pred HHHHHhccccEEEE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHH
Confidence 00011122222223 222211 113589999999999999887 588877 999999999999999987
Q ss_pred HH
Q 001400 352 ST 353 (1085)
Q Consensus 352 ~~ 353 (1085)
..
T Consensus 258 ~~ 259 (337)
T 2qm8_A 258 HR 259 (337)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 236
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.09 E-value=7.6e-12 Score=140.64 Aligned_cols=142 Identities=13% Similarity=0.082 Sum_probs=94.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh-------cccce--EEEEccCCCCCCCCCHHHHH
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE-------TFARI--SGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~-------~~~~~--~gy~~Q~~~~~~~~tv~e~l 923 (1085)
++|++++|+||||||||||++.|+|... +..|+|.+.|.+.... .+++. +.|++|.....|..+++|++
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~--~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLK--NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH--hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 6899999999999999999999999654 3468999999875321 12233 55999998888999999999
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
.+...... +. -+++..++.+... .=.++.-.+++++..++.+++||.+|. .
T Consensus 205 ~~~~~~~~--d~----------vliDtaG~~~~~~------------~l~~eL~~i~ral~~de~llvLDa~t~-~---- 255 (328)
T 3e70_C 205 QHAKARGI--DV----------VLIDTAGRSETNR------------NLMDEMKKIARVTKPNLVIFVGDALAG-N---- 255 (328)
T ss_dssp HHHHHHTC--SE----------EEEEECCSCCTTT------------CHHHHHHHHHHHHCCSEEEEEEEGGGT-T----
T ss_pred HHHHhccc--hh----------hHHhhccchhHHH------------HHHHHHHHHHHHhcCCCCEEEEecHHH-H----
Confidence 76432110 00 0011112111111 112333458899998888888885554 3
Q ss_pred HHHHHHHHHHHHH-CCceEEEEecC
Q 001400 1004 AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~-~g~tvi~~~H~ 1027 (1085)
.+++.++.+.+ .+.|+|++||.
T Consensus 256 --~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 256 --AIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp --HHHHHHHHHHHHSCCCEEEEECG
T ss_pred --HHHHHHHHHHHhcCCCEEEEeCc
Confidence 44555566653 58999999995
No 237
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.08 E-value=4.2e-12 Score=146.99 Aligned_cols=156 Identities=17% Similarity=0.184 Sum_probs=89.2
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++|+++++.|+.++|+|+||||||||+++|+|... .+.+++.. +....+|++.+++. ..+++.|..-+
T Consensus 148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~--------~i~~~~ft--Tl~p~~G~V~~~~~--~~~~l~DtpGl 215 (416)
T 1udx_A 148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP--------KIAPYPFT--TLSPNLGVVEVSEE--ERFTLADIPGI 215 (416)
T ss_dssp EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC--------EECCCTTC--SSCCEEEEEECSSS--CEEEEEECCCC
T ss_pred eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc--------cccCcccc--eecceeeEEEecCc--ceEEEEecccc
Confidence 69999999999999999999999999999998642 23344321 12233555555431 00111111000
Q ss_pred hhhhcCCCcccHHHHH--HHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 926 SAWLRLPSEIELETQR--AFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
...............+ +.++.++..+++. +. ....||+|++|++.+|++|+.+|.||++ +.+|...
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~vvDls---~~-----~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYVLDAA---DE-----PLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEEEETT---SC-----HHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEEeCCc---cC-----CHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000000001111000 0011112222221 11 1246999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHHH-HCCceEEEEec
Q 001400 1004 AAIVMRTVRNIV-NTGRTIVCTIH 1026 (1085)
Q Consensus 1004 ~~~i~~~l~~~~-~~g~tvi~~~H 1026 (1085)
. ..++.+++.. +.|.+++.+|.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCT
T ss_pred H-HHHHHHHHHHHhcCCeEEEEEC
Confidence 6 4444444443 45777776664
No 238
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.08 E-value=1.1e-11 Score=139.33 Aligned_cols=75 Identities=15% Similarity=0.087 Sum_probs=62.0
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---------CceEEEEccCCCCCCCCCHH
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---------PRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---------~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..++|++++|+||||||||||++.|+|.+.+. +|+|.++|.+...... +..+.|++|+....|.+||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~---~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~ 201 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNH---GFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAY 201 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhc---CCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHH
Confidence 34789999999999999999999999999775 8999999987643221 12356999998889999999
Q ss_pred HHHHHhh
Q 001400 228 ETLDFAG 234 (1085)
Q Consensus 228 E~l~f~~ 234 (1085)
|++.++.
T Consensus 202 e~l~~~~ 208 (328)
T 3e70_C 202 DAIQHAK 208 (328)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998753
No 239
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.05 E-value=7e-12 Score=145.40 Aligned_cols=137 Identities=19% Similarity=0.130 Sum_probs=90.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC-------CceEEEEc-----
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP-------PRTSAYVS----- 215 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~-------~~~~~yv~----- 215 (1085)
..+|+++ + .++|++++|+|||||||||||++|+|.+.+. +|+|.+.|.++..... .+.++|.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~---~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr 230 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSS---ERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLR 230 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCT---TSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHH
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCC---CCEEEEecccchhccCCcceEEEccccCcCHHHHHH
Confidence 3578888 4 4899999999999999999999999999875 8999999987642111 12334443
Q ss_pred ----cCCCC--CCC----CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH
Q 001400 216 ----QQDWQ--VAE----MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1085)
Q Consensus 216 ----Q~d~~--~~~----lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 285 (1085)
|++.. +++ .|+++++.++..-+..-.. +........++ .
T Consensus 231 ~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~t------------------------------lh~~~~~~~i~-r 279 (418)
T 1p9r_A 231 AILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMST------------------------------LHTNTAVGAVT-R 279 (418)
T ss_dssp HHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEE------------------------------ECCSSSHHHHH-H
T ss_pred HHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccc------------------------------cchhhHHHHHH-H
Confidence 77654 344 5788887764311100000 00000011122 4
Q ss_pred HHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeE
Q 001400 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLF 329 (1085)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vll 329 (1085)
|..+|++... ....|||||+|| ||++|+.+|++..
T Consensus 280 L~~lgl~~~~-------~~~~LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 280 LRDMGIEPFL-------ISSSLLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp HHHHTCCHHH-------HHHHEEEEEEEE--EEEEECTTTCEEE
T ss_pred HHHcCCcHHH-------HHHHHHHHHHHH--hhhhhcCCCCccC
Confidence 5677886542 224699999999 9999999999876
No 240
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.05 E-value=9.7e-13 Score=133.89 Aligned_cols=139 Identities=15% Similarity=0.198 Sum_probs=81.5
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCCC-CeeeeEEEEcCccCCh------hccc-ceEE----EEccCCCCCCCCCHHHHH
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPKRQ------ETFA-RISG----YCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~~~------~~~~-~~~g----y~~Q~~~~~~~~tv~e~l 923 (1085)
++++|+|+||||||||+++|+|...+ +...|.|.++|.++.. ..++ +.+| +++|+..++.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i-------- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI-------- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE--------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE--------
Confidence 57999999999999999999996442 2337999999987321 2333 3456 7888765440
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHH-cCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEE-------EEeCC
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMEL-VELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIV-------FMDEP 995 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~il-------llDEP 995 (1085)
+.. .. +....+++.++. +. + .|..++ .+||+|||||++||||++.+|++. .=|.|
T Consensus 75 ------~~~---~~-~~~a~l~~~i~~~l~--g-~dt~i~----EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 75 ------RRV---SE-EEGNDLDWIYERYLS--D-YDLVIT----EGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp ------EEC---CH-HHHTCHHHHHHHHTT--T-CSEEEE----ESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred ------ecC---Ch-hhhhCHHHHHHhhCC--C-CCEEEE----CCcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 000 00 001124445544 43 2 344443 359999999999999999998762 22444
Q ss_pred CCC---CCHHHHHHHHHHHHHHHHCCc
Q 001400 996 TSG---LDARAAAIVMRTVRNIVNTGR 1019 (1085)
Q Consensus 996 tsg---LD~~~~~~i~~~l~~~~~~g~ 1019 (1085)
..+ +|......+.+.|.+...+|.
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~~ 164 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREGG 164 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC--
T ss_pred cccCcccCcccHHHHHHHHHHHHhccC
Confidence 322 334445667777766555554
No 241
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.05 E-value=1.3e-13 Score=155.44 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=93.3
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCC-----CceeeEEEECCccCCCCCC------------------CceEEEE---
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHH-----LQVSGKITYNGHGFKEFVP------------------PRTSAYV--- 214 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~-----~~~~G~i~~~G~~~~~~~~------------------~~~~~yv--- 214 (1085)
=++++|+|+|||||||||+.|+|..... .+..|+|.++|.++..... .+.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999975210 1238999999987654311 1234555
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccc
Q 001400 215 SQQDWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTC 294 (1085)
Q Consensus 215 ~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~ 294 (1085)
+|+...+++.+|.||..++... .......... ... . ...++.++..+++.+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~-------~~~~~~~~~~---------~~~---~---------~~~l~~~l~~vd~~~~ 135 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG-------PIIQTFFSHE---------VLC---Q---------RYLLDGVIALVDAVHA 135 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH-------HHHHHHHHSH---------HHH---H---------HEEEEEEEEEEETTTH
T ss_pred HhcCCCCCCEEEEeCCCCCCHH-------HHHHHHhcCc---------ccc---C---------eEEECCEEEEEEHHHH
Confidence 4554444556666665442100 0000000000 000 0 0001112223333333
Q ss_pred ccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhh
Q 001400 295 ADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYEL 374 (1085)
Q Consensus 295 ~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~ 374 (1085)
.+.. ..+|||||||+..+++++.+|+++ ||| ..+.+.++++. . +++|+.++|...+...+
T Consensus 136 ~~~~------~~ls~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~-~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 136 DEQM------NQFTIAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARIN--A-RAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HHHH------HHCHHHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--S-SSCEEECCSSCCCGGGG
T ss_pred HHHH------hhchHHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--C-CCeEEEecccCCCHHHH
Confidence 3222 158999999998888888888877 888 67777887764 2 34455555643333333
Q ss_pred c
Q 001400 375 F 375 (1085)
Q Consensus 375 ~ 375 (1085)
+
T Consensus 196 ~ 196 (318)
T 1nij_A 196 F 196 (318)
T ss_dssp S
T ss_pred h
Confidence 3
No 242
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=1.3e-10 Score=119.48 Aligned_cols=46 Identities=15% Similarity=0.197 Sum_probs=41.6
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEEecCcc
Q 001400 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQPS 1029 (1085)
Q Consensus 984 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~ 1029 (1085)
+.+|++|+||||++ ++|+..+..+.+++....+.|+++|++||.+.
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 45899999999995 99999999999999988778999999999864
No 243
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.05 E-value=2.1e-12 Score=153.81 Aligned_cols=85 Identities=19% Similarity=0.105 Sum_probs=66.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHH
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVR 227 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~ 227 (1085)
..+++++++.+++|+.++|+|||||||||||++|+|.+++. +|.|+++|.+--.......++++.|........|..
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~---~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~ 323 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPD---AKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTT---CCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCC---CCEEEEcCcccccCCCCCeEEEEeecccccCCcCHH
Confidence 45889999999999999999999999999999999999876 899999986522222234567777765533456888
Q ss_pred HHHHHhhh
Q 001400 228 ETLDFAGQ 235 (1085)
Q Consensus 228 E~l~f~~~ 235 (1085)
+.+..+.+
T Consensus 324 ~~l~~~LR 331 (511)
T 2oap_1 324 DLLRAALR 331 (511)
T ss_dssp HHHHTTGG
T ss_pred HHHHHhhc
Confidence 88876554
No 244
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.04 E-value=3.8e-10 Score=129.90 Aligned_cols=98 Identities=14% Similarity=0.208 Sum_probs=74.1
Q ss_pred HHHHHHHHhCCcc-------cccccccC----cccccCchhhhhHH------HHHHHHhCC-CcEeEEeCCCCCCCHHHH
Q 001400 281 VVEYIMKILGLDT-------CADTLVGD----EMLKGISGGQKKRL------TTGELLVGP-ARVLFMDEISNGLDSSTT 342 (1085)
Q Consensus 281 ~~~~~l~~lgL~~-------~~dt~vg~----~~~~~LSGGqkqRv------sia~al~~~-p~vlllDEptsgLD~~~~ 342 (1085)
.++..++.+++++ ..+..+.+ ..+..+|||||||+ ++|++++.+ |++|+|||||+|||+.++
T Consensus 244 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~ 323 (371)
T 3auy_A 244 YLNEAFSEFDLPYSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRR 323 (371)
T ss_dssp HHHHHHHHTTCSCSCEEECTTCCEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHH
T ss_pred HHHHHHHHhcCcceEEEEccceeEEEEcCCCccchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHH
Confidence 3456777787765 11222222 34567999999988 567899999 999999999999999999
Q ss_pred HHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEec
Q 001400 343 YQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLS 382 (1085)
Q Consensus 343 ~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~ 382 (1085)
..+.+.|+++.. +++++ .++|.. ++...+|++++|+
T Consensus 324 ~~l~~~l~~~~~--~~~vi-~~th~~-~~~~~~d~~~~l~ 359 (371)
T 3auy_A 324 AKLAEIFRKVKS--IPQMI-IITHHR-ELEDVADVIINVK 359 (371)
T ss_dssp HHHHHHHHHCCS--CSEEE-EEESCG-GGGGGCSEEEEEE
T ss_pred HHHHHHHHHhcc--CCeEE-EEEChH-HHHhhCCEEEEEE
Confidence 999999987532 34544 455664 4788999999996
No 245
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.02 E-value=8.1e-11 Score=120.96 Aligned_cols=48 Identities=17% Similarity=0.089 Sum_probs=36.9
Q ss_pred hCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhH
Q 001400 322 VGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE 370 (1085)
Q Consensus 322 ~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~ 370 (1085)
+.+|++|+||||++ ++|......+.+.+..... .+.++|++.+++..+
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 44899999999985 9999999999998887653 356777766555443
No 246
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.00 E-value=5.9e-11 Score=132.48 Aligned_cols=124 Identities=13% Similarity=0.093 Sum_probs=79.4
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC--C-ceEEEEccCCCCC-----CCCCH
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP--P-RTSAYVSQQDWQV-----AEMTV 226 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~--~-~~~~yv~Q~d~~~-----~~lTV 226 (1085)
+.+|++++|+||||||||||+|+|+ .+.+. +|+|.+ +|.+.+.... . +.++|++|++.+. +.+|+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~---~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELR---TQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCC---CSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCc---ccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH
Confidence 3468999999999999999999999 87765 899999 8877654321 1 2579999998543 78899
Q ss_pred HHHH--HHhhhhcCCCCchhhhHHH-HHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcc-cccccccCc
Q 001400 227 RETL--DFAGQCQGVGSKYDMITEL-ARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDT-CADTLVGDE 302 (1085)
Q Consensus 227 ~E~l--~f~~~~~~~~~~~~~~~~~-~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~-~~dt~vg~~ 302 (1085)
|++ .|+. . .+. |+ ..+..+ ..+....++++++.+||+. .++...
T Consensus 238 -e~l~~~f~~-~----------~~~~c~---~~~~~~--------------~~e~~~~v~~~l~~~~L~~~~~~~~~--- 285 (302)
T 2yv5_A 238 -REVRNYFRE-F----------LRYQCK---YPDCTH--------------TNEPGCAVKEAVKNGEISCERYKSYL--- 285 (302)
T ss_dssp -GGGGGGCGG-G----------HHHHHH---STTCCS--------------SSCTTCHHHHHHHTTSSCHHHHHHHH---
T ss_pred -HHHHHHHHH-H----------HHccCC---CCCCCC--------------CCCCCCHHHHHHHcCCCCHHHHHHHH---
Confidence 888 4431 0 000 00 000000 0111234888999999975 555443
Q ss_pred ccccCchhhhhHHHHHH
Q 001400 303 MLKGISGGQKKRLTTGE 319 (1085)
Q Consensus 303 ~~~~LSGGqkqRvsia~ 319 (1085)
+.|||.++|++.|||
T Consensus 286 --~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 286 --KIIKVYLEEIKELCR 300 (302)
T ss_dssp --HHTTCCCTTHHHHSS
T ss_pred --HHHHHHHHHHHHHhc
Confidence 469999999999986
No 247
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.00 E-value=2.4e-10 Score=131.74 Aligned_cols=148 Identities=22% Similarity=0.267 Sum_probs=86.4
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhh--hCCCC---CCeeeeEEEEcCccC-Chhc---ccceEEEEccCCCCCCCCCHH
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVL--AGRKT---GGIIEGDIYISGYPK-RQET---FARISGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l--~g~~~---~~~~~G~i~i~g~~~-~~~~---~~~~~gy~~Q~~~~~~~~tv~ 920 (1085)
+-|++|++++|+||||||||||++.| .+..+ ++...+.+++++... .... +++.+|+.+
T Consensus 173 GGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~------------ 240 (400)
T 3lda_A 173 GGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDP------------ 240 (400)
T ss_dssp TSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCH------------
T ss_pred CCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCCh------------
Confidence 45789999999999999999999954 45432 112235777777532 1100 011111110
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCH-HHHHHHHHHHHHh--cCCCEEEEeCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLST-EQRKRLTIAVELV--ANPSIVFMDEPTS 997 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~-Gqrqrl~iA~aL~--~~p~illlDEPts 997 (1085)
+++++.+.+ . ...+. .+.+.+.-+.+++ .+|+++++||||+
T Consensus 241 ------------------------~~vleni~~--------~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 241 ------------------------DDALNNVAY--------A----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp ------------------------HHHHHTEEE--------E----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred ------------------------HhHhhcEEE--------e----ccCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 112211100 0 01222 2334444444433 4699999999999
Q ss_pred CCCHHHH------------HHHHHHHHHHHHC-CceEEEEecCcc------------------HHHHHhcCEEEEEecC
Q 001400 998 GLDARAA------------AIVMRTVRNIVNT-GRTIVCTIHQPS------------------IDIFESFDELLFMKRG 1045 (1085)
Q Consensus 998 gLD~~~~------------~~i~~~l~~~~~~-g~tvi~~~H~~~------------------~~~~~~~d~il~l~~g 1045 (1085)
.+|.... ..+++.|++++++ |.|||+|+|... ..+...+|.++.|.++
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9996533 5678888888754 999999999721 1134557999999864
No 248
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.98 E-value=4.3e-11 Score=138.56 Aligned_cols=170 Identities=17% Similarity=0.157 Sum_probs=98.9
Q ss_pred cccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 001400 151 LDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 151 L~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
-+++++.+++|+.++|+|+|||||||||++|+|..+ .+.+.+.... ...+++|.+++. ..+++.++.
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~---------~i~~~~ftTl--~p~~G~V~~~~~--~~~~l~Dtp 213 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP---------KIAPYPFTTL--SPNLGVVEVSEE--ERFTLADIP 213 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC---------EECCCTTCSS--CCEEEEEECSSS--CEEEEEECC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc---------cccCccccee--cceeeEEEecCc--ceEEEEecc
Confidence 378999999999999999999999999999998632 2334333322 234566666541 111221111
Q ss_pred HH---hhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccC
Q 001400 231 DF---AGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGI 307 (1085)
Q Consensus 231 ~f---~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~L 307 (1085)
-+ +....+.+. . +.+. ..+++.++..+++. +.....+
T Consensus 214 Gli~~a~~~~~L~~------~------------------fl~~--------~era~~lL~vvDls--------~~~~~~l 253 (416)
T 1udx_A 214 GIIEGASEGKGLGL------E------------------FLRH--------IARTRVLLYVLDAA--------DEPLKTL 253 (416)
T ss_dssp CCCCCGGGSCCSCH------H------------------HHHH--------HTSSSEEEEEEETT--------SCHHHHH
T ss_pred ccccchhhhhhhhH------H------------------HHHH--------HHHHHhhhEEeCCc--------cCCHHHH
Confidence 10 000000000 0 0000 00011122233332 2334569
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
|+||+||+.+|++|...|.++++ +.+|.... ..++.+++..+..+.+++.+..+....+.++++.+
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i 319 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEAL 319 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHH
Confidence 99999999999999999999999 99999876 55555555444334455555545555555555543
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.97 E-value=9.6e-13 Score=152.61 Aligned_cols=149 Identities=15% Similarity=0.067 Sum_probs=96.6
Q ss_pred ccccccccccCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcccc
Q 001400 830 VELKQEGVLEDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETFAR 902 (1085)
Q Consensus 830 ~~~~~~~~~~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~~~ 902 (1085)
+.+++++..++...+|+++ + .++|++++|+|||||||||||++|+|... +..|.|.+.|.++.. ....+
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~--~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN--SSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC--CTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHHHHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC--CCCCEEEEecccchhccCCcceEEEcc
Confidence 3455666655556678888 4 48999999999999999999999999654 236899998876531 12233
Q ss_pred eEEEEc---------cCCCCC--CC----CCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 001400 903 ISGYCE---------QNDIHS--PG----LTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGI 966 (1085)
Q Consensus 903 ~~gy~~---------Q~~~~~--~~----~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 966 (1085)
.+|+.+ |++... .. .|+.+++.+...-... ...........+ +.+..+++.... . +
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~~--~-----~ 291 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPFL--I-----S 291 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHHH--H-----H
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHHH--H-----H
Confidence 445554 877652 22 5888988765321100 000000011122 345666776543 2 2
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEE
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFM 992 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illl 992 (1085)
..|||||+|| ||++|+.+|++..-
T Consensus 292 ~~LSgg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 292 SSLLGVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp HHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHHHHHH--hhhhhcCCCCccCC
Confidence 4699999999 99999999998763
No 250
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.96 E-value=3.1e-11 Score=133.62 Aligned_cols=128 Identities=15% Similarity=0.111 Sum_probs=81.9
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhh----
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAW---- 928 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~---- 928 (1085)
+++.++||+|++|||||||.+.|.+.... .| . -.+.+.+|+|++.+++. +.++++.++..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~---~g------~------~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME---KY------G------GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH---HH------G------GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh---cC------C------CCceEEEeccccccCCh-HHHHHHhccccccch
Confidence 46889999999999999999999985431 11 0 02345566998887754 88899877521
Q ss_pred hc---CCCcccHHHHHHHHHHHHHHcCCCc--ccccccCCC-CCCCCCHHHHHHHHHH--HHHhcCCCEEEEeCCCCCCC
Q 001400 929 LR---LPSEIELETQRAFVEEVMELVELTS--LSGALIGLP-GINGLSTEQRKRLTIA--VELVANPSIVFMDEPTSGLD 1000 (1085)
Q Consensus 929 ~~---~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~-~~~~LS~Gqrqrl~iA--~aL~~~p~illlDEPtsgLD 1000 (1085)
+. .|.... .+...+.++.+.... .....+..| ....+||||+||+.+| +++ +|+|||+||||+++|
T Consensus 93 ~~~~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld 166 (290)
T 1odf_A 93 LQGRGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFN 166 (290)
T ss_dssp GSSSCSTTSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCC
T ss_pred hhhccCcchhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCC
Confidence 11 122222 223445555543220 000000001 1246999999999987 555 899999999999999
Q ss_pred HH
Q 001400 1001 AR 1002 (1085)
Q Consensus 1001 ~~ 1002 (1085)
+.
T Consensus 167 ~~ 168 (290)
T 1odf_A 167 PI 168 (290)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 251
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.94 E-value=2.1e-11 Score=128.61 Aligned_cols=121 Identities=18% Similarity=0.223 Sum_probs=70.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhc
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQ 237 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~ 237 (1085)
.++|++++|+||||||||||+++|+|.+++. | ..+++|++++.++.. +..+++.... .+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~----g---------------~~~g~v~~d~~~~~~-~~~~~~~~~~-~~ 77 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ----G---------------LPAEVVPMDGFHLDN-RLLEPRGLLP-RK 77 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT----T---------------CCEEEEESGGGBCCH-HHHGGGTCGG-GT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc----C---------------CceEEEecCCCcCCH-HHHHHhcccc-cC
Confidence 5789999999999999999999999998642 2 146777777654432 2222221000 00
Q ss_pred CCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHH
Q 001400 238 GVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTT 317 (1085)
Q Consensus 238 ~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsi 317 (1085)
+.+..+ +.. .....+..+......++.+.+.. .++||||+||+++
T Consensus 78 ~~~~~~-------------------~~~---------------~~~~~l~~l~~~~~i~~p~~d~~-~~~~~g~~~~v~~ 122 (208)
T 3c8u_A 78 GAPETF-------------------DFE---------------GFQRLCHALKHQERVIYPLFDRA-RDIAIAGAAEVGP 122 (208)
T ss_dssp TSGGGB-------------------CHH---------------HHHHHHHHHHHCSCEEEEEEETT-TTEEEEEEEEECT
T ss_pred CCCchh-------------------hHH---------------HHHHHHHHHhcCCceecccCCcc-ccCCCCCceEEcC
Confidence 000000 000 01112222211122233444433 3589999999998
Q ss_pred H-HHHhCCCcEeEEeCCC
Q 001400 318 G-ELLVGPARVLFMDEIS 334 (1085)
Q Consensus 318 a-~al~~~p~vlllDEpt 334 (1085)
| ++++.++.++++|||.
T Consensus 123 ~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 123 ECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp TCCEEEEEESSTTBCSTT
T ss_pred CCcEEEECCceeccCCch
Confidence 8 7777777777788873
No 252
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.93 E-value=5.5e-13 Score=158.72 Aligned_cols=180 Identities=12% Similarity=0.071 Sum_probs=106.0
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE 921 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e 921 (1085)
..+++++++.+++|+.++|+||||||||||+++|+|..+ +..|.|.++|.+.-.......+++..|........|..+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~--~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP--PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC--TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC--CCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHH
Confidence 346789999999999999999999999999999999776 357999998865211111234555555433222344444
Q ss_pred HHHHhhhhcCCC-----cccHHHHH------------------HHHHHHHHHcCCCc--ccccccC-CC----CCCCCCH
Q 001400 922 SLLFSAWLRLPS-----EIELETQR------------------AFVEEVMELVELTS--LSGALIG-LP----GINGLST 971 (1085)
Q Consensus 922 ~l~~~~~~~~~~-----~~~~~~~~------------------~~~~~~l~~~~l~~--~~~~~~~-~~----~~~~LS~ 971 (1085)
.+...... .|. +....+.. ..+.++++.+.... +...+.. .. ....+|+
T Consensus 325 ~l~~~LR~-~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 325 LLRAALRQ-RPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHTTGGG-CCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHhhcc-CCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 44321110 010 00000000 01223333332211 1000000 00 0124799
Q ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEE--EecCccHHHHHhcC
Q 001400 972 EQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVC--TIHQPSIDIFESFD 1037 (1085)
Q Consensus 972 Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~--~~H~~~~~~~~~~d 1037 (1085)
||+||+++|. + | |+|||+.....+++.|.++...|+|+++ +||+++ ++...++
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~-ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLE-KMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHH-HHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHH-HHHHHcC
Confidence 9999877652 1 7 9999999888888888777666889985 899876 4555553
No 253
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.93 E-value=5.7e-12 Score=138.73 Aligned_cols=142 Identities=17% Similarity=0.159 Sum_probs=94.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCC-CCCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQD-WQVAE 223 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d-~~~~~ 223 (1085)
..+++++++.+++| ++|+||||||||||+++|+|.+.+ |.|.++|.++..... .+.+++++|.. ...|.
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~ 105 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPC 105 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCC
Confidence 35899999999999 999999999999999999998753 789999977643321 13456666653 34455
Q ss_pred CCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcc
Q 001400 224 MTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEM 303 (1085)
Q Consensus 224 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~ 303 (1085)
+++.|++.+.+..++. .. .+ .+.... +..
T Consensus 106 i~~~Deid~~~~~r~~--------------~~--------------------------~~------~~~~~~-----~~~ 134 (274)
T 2x8a_A 106 VIFFDEVDALCPRRSD--------------RE--------------------------TG------ASVRVV-----NQL 134 (274)
T ss_dssp EEEEETCTTTCC-------------------------------------------------------CTTHH-----HHH
T ss_pred eEeeehhhhhhcccCC--------------Cc--------------------------ch------HHHHHH-----HHH
Confidence 5555555432110000 00 00 000111 122
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCC------------CCCHHHHHHHHHHH
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISN------------GLDSSTTYQIIKYL 349 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEpts------------gLD~~~~~~i~~~l 349 (1085)
...|||||+||+.+++|+..+|++| ||++. -.|...+.+|++.+
T Consensus 135 l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 135 LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 3469999999999999999999985 88864 23677777776654
No 254
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.91 E-value=2.1e-12 Score=147.99 Aligned_cols=171 Identities=16% Similarity=0.150 Sum_probs=115.1
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC----C-----CCceeeEEEECCccCCC----CCCCceE---EEEccCCCC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG----H-----HLQVSGKITYNGHGFKE----FVPPRTS---AYVSQQDWQ 220 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~----~-----~~~~~G~i~~~G~~~~~----~~~~~~~---~yv~Q~d~~ 220 (1085)
.+++|..++|+|+||||||||+|+|+|.-. + ..+..|.|.++|..+.. ..+++.+ .++.+.+-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 668899999999999999999999999321 1 12458999999843211 1233333 477777777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccccc
Q 001400 221 VAEMTVRETL--DFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTL 298 (1085)
Q Consensus 221 ~~~lTV~E~l--~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~ 298 (1085)
...++..|++ .|...++.. +.++..+...
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~-------------------------------------------d~il~Vvd~~------ 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV-------------------------------------------DAIYQVVRAF------ 126 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC-------------------------------------------SEEEEEEECC------
T ss_pred ccCCcHHHHHHHHHHHHHHHH-------------------------------------------HHHHHHHhcc------
Confidence 7777766655 332221110 0011111111
Q ss_pred ccCcccccCchhhhhHHHHHHHHhCCC--cEeEEeCCCCCCCHHHHHHHHHHHHHH-HhccCCEEEEEEecChhHHHhhc
Q 001400 299 VGDEMLKGISGGQKKRLTTGELLVGPA--RVLFMDEISNGLDSSTTYQIIKYLKHS-TRALDGTTVISLLQPAPEAYELF 375 (1085)
Q Consensus 299 vg~~~~~~LSGGqkqRvsia~al~~~p--~vlllDEptsgLD~~~~~~i~~~l~~~-~~~~~~t~ii~~~q~~~~~~~~~ 375 (1085)
++..+..+||+. +| +++++|||+.++|.......++.++.. .. .+.| ++ .|...++.++|
T Consensus 127 -~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~t-i~--sh~~~~~~~l~ 189 (392)
T 1ni3_A 127 -DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANT-LE--MKAKKEEQAII 189 (392)
T ss_dssp -CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCS-SS--HHHHHHHHHHH
T ss_pred -ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCc-cc--cccHHHHHHHH
Confidence 122233467654 88 999999999999999999999988876 43 2333 32 78888999999
Q ss_pred CeEE-EecCC-eEEEecChh
Q 001400 376 DDVI-LLSEG-QIVYQGPRV 393 (1085)
Q Consensus 376 D~ii-~L~~G-~iv~~G~~~ 393 (1085)
|++. +|.+| ++++.|+.+
T Consensus 190 ~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 190 EKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHhccCCceeecCCCC
Confidence 9999 99999 988877643
No 255
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.89 E-value=9.7e-10 Score=125.55 Aligned_cols=162 Identities=15% Similarity=0.013 Sum_probs=83.1
Q ss_pred EEEEccCCCChhHHHhhhhC-CCCCCeeeeEEEEcCccCChh-cccceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCcc
Q 001400 858 TALVGVSGAGKTTLMDVLAG-RKTGGIIEGDIYISGYPKRQE-TFARISGYCEQNDIHSPGLTVLESLLFSAWLRLPSEI 935 (1085)
Q Consensus 858 ~al~G~nGaGKSTLl~~l~g-~~~~~~~~G~i~i~g~~~~~~-~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~ 935 (1085)
+.|.||||+|||||+++|++ ... +..|.+.++|.+.... ...+.+++++|.+.+....+ + .. ..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~--~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--------~~--~~ 104 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFG--PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D--------MG--NN 104 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSC--TTCCC------------------CCEECSSEEEECCC----------------C
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC--CCCCeEEecceeecccccccceeeeecccceEEecHh--h--------cC--Cc
Confidence 89999999999999999998 333 3468888888654321 12345677877654321110 0 00 00
Q ss_pred cHHHHHHHHHHHHHHcC-CCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001400 936 ELETQRAFVEEVMELVE-LTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1085)
Q Consensus 936 ~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~ 1014 (1085)
... .+.+.++.+. ...+.+.. .||+ +..+|+|+|+|||++ ||+.++..+.+.+.+.
T Consensus 105 ~~~----~~~~~i~~~~~~~~~~~~~-------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 105 DRI----VIQELLKEVAQMEQVDFQD-------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKY 161 (354)
T ss_dssp CHH----HHHHHHHHHTTTTC------------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHS
T ss_pred chH----HHHHHHHHHHHhccccccc-------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhh
Confidence 000 1223333221 11111100 2455 788999999999999 9999999999999885
Q ss_pred HHCCceEEEEecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHH
Q 001400 1015 VNTGRTIVCTIHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFE 1066 (1085)
Q Consensus 1015 ~~~g~tvi~~~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~ 1066 (1085)
. .+.++|+++|+++...-...+| ...+...++.. +++.++.+
T Consensus 162 ~-~~~~~Il~t~~~~~l~~~l~sR-------~~~~~~~~~~~--~~~~~~l~ 203 (354)
T 1sxj_E 162 S-KNIRLIMVCDSMSPIIAPIKSQ-------CLLIRCPAPSD--SEISTILS 203 (354)
T ss_dssp T-TTEEEEEEESCSCSSCHHHHTT-------SEEEECCCCCH--HHHHHHHH
T ss_pred c-CCCEEEEEeCCHHHHHHHHHhh-------ceEEecCCcCH--HHHHHHHH
Confidence 3 4789999999976311111122 24556666653 34444444
No 256
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.88 E-value=9.3e-11 Score=130.86 Aligned_cols=121 Identities=13% Similarity=0.181 Sum_probs=78.7
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh--ccc-ceEEEEccCCCCC-----CCCCHHH
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TFA-RISGYCEQNDIHS-----PGLTVLE 921 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~~-~~~gy~~Q~~~~~-----~~~tv~e 921 (1085)
.+|++++|+|+||||||||+++|+ ... +.+|+|.+ +|.+.+.. .+. +.+||++|.|.+. +.+|+ |
T Consensus 163 l~G~i~~l~G~sG~GKSTLln~l~-~~~--~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 163 LEGFICILAGPSGVGKSSILSRLT-GEE--LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp TTTCEEEEECSTTSSHHHHHHHHH-SCC--CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred ccCcEEEEECCCCCCHHHHHHHHH-Hhh--CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 469999999999999999999999 765 46899999 88765432 122 2579999998654 67899 8
Q ss_pred HH--HHhh---h-hcCCCcccHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCCCCHHHHHHHHHHHH
Q 001400 922 SL--LFSA---W-LRLPSEIELETQRAFVEEVMELVELTS-LSGALIGLPGINGLSTEQRKRLTIAVE 982 (1085)
Q Consensus 922 ~l--~~~~---~-~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~~~~LS~Gqrqrl~iA~a 982 (1085)
++ .|.. . .+...-....+....++++++.+++.+ ..+... ..||+.++|++.|||+
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 88 4431 0 011100011122345788999999975 445443 3689988999999873
No 257
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.88 E-value=5.7e-13 Score=139.55 Aligned_cols=57 Identities=18% Similarity=0.216 Sum_probs=42.7
Q ss_pred HHH-HHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 317 TGE-LLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 317 ia~-al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
.++ +++.+|++++|||+|+++|..+...|.+.|....+.. .+.| . . ..||.|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~------~~a~-~--~-~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDM------ESSK-E--P-GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHT------TGGG-S--T-TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH------HHhh-c--c-CCceEEEECCC
Confidence 455 6788888999999999999999999999888765532 1223 1 1 67899988764
No 258
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.87 E-value=4.4e-09 Score=104.50 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=29.7
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+|+++ +|+.++|+||||||||||+++|+|.+.+
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 355665 8999999999999999999999998754
No 259
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.83 E-value=1.1e-10 Score=130.69 Aligned_cols=73 Identities=12% Similarity=0.162 Sum_probs=58.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC--CCCceeeEEEE---CCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG--HHLQVSGKITY---NGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~--~~~~~~G~i~~---~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1085)
++|++++|+||||||||||+++|+|.+. +. +|+|.+ +|...... ..+.++++ |+..+++.+|+.+++.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~---~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~ 152 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPE---HRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFV 152 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT---CCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC---CCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHH
Confidence 8999999999999999999999999987 65 899999 88664211 12346788 776677889999999876
Q ss_pred hhh
Q 001400 234 GQC 236 (1085)
Q Consensus 234 ~~~ 236 (1085)
..+
T Consensus 153 ~~l 155 (308)
T 1sq5_A 153 SDL 155 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 260
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.81 E-value=2.9e-11 Score=127.53 Aligned_cols=44 Identities=30% Similarity=0.412 Sum_probs=33.7
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCC-CeeeeEEEEcCccC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTG-GIIEGDIYISGYPK 895 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~-~~~~G~i~i~g~~~ 895 (1085)
.++|+++||+||||||||||+++|+|...+ |...|.|.++|+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 368999999999999999999999996431 22356666666543
No 261
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.80 E-value=1.6e-08 Score=116.47 Aligned_cols=62 Identities=8% Similarity=0.056 Sum_probs=43.4
Q ss_pred CCCcEeEEeCCCCCCCHHHH------------HHHHHHHHHHHhccCCEEEEEEecCh-------------------hHH
Q 001400 323 GPARVLFMDEISNGLDSSTT------------YQIIKYLKHSTRALDGTTVISLLQPA-------------------PEA 371 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~~~~------------~~i~~~l~~~~~~~~~t~ii~~~q~~-------------------~~~ 371 (1085)
.+|+++++|||++.+|+... .++++.|+++++..+.++|+ ++|.. ..+
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIl-v~Hv~~~~~g~~~~~g~~~~p~gg~~l 350 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVV-TNQVVAQVDGGMAFNPDPKKPIGGNIM 350 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEEC--------------------CHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEE-EEeecccCCccccccCCCccCCchhHH
Confidence 57999999999999996533 56888888888776656555 45541 224
Q ss_pred HhhcCeEEEecCCe
Q 001400 372 YELFDDVILLSEGQ 385 (1085)
Q Consensus 372 ~~~~D~ii~L~~G~ 385 (1085)
.+.+|.++.|+.++
T Consensus 351 ~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 351 AYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHCSEEEEEEECS
T ss_pred HHhcceEEEEEecC
Confidence 56789999997653
No 262
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.79 E-value=6.4e-11 Score=134.38 Aligned_cols=154 Identities=19% Similarity=0.205 Sum_probs=96.0
Q ss_pred eecccceeeEeCC-------eEEEEeCCCCCChhHHHHHHHhhhCCCC-ceeeEEEECCccCCCC---CCCceEEEEccC
Q 001400 149 TILDDLSGIIRPS-------RLTLLLGPPSSGKTTLLLALAGRLGHHL-QVSGKITYNGHGFKEF---VPPRTSAYVSQQ 217 (1085)
Q Consensus 149 ~iL~~vs~~i~~G-------~~~~llGp~GsGKSTLL~~L~G~l~~~~-~~~G~i~~~G~~~~~~---~~~~~~~yv~Q~ 217 (1085)
.++++++..+++| +.++|.||||+|||||+++|+|.+.... ..+|.+..++.++... ..++.+.|+.|.
T Consensus 32 ~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~ 111 (334)
T 1in4_A 32 NVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEI 111 (334)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETG
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcch
Confidence 4677777777766 8899999999999999999999984321 2467666655443211 124578999998
Q ss_pred CCCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccc
Q 001400 218 DWQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADT 297 (1085)
Q Consensus 218 d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt 297 (1085)
+.+.+ ++.|++.......+. +.+. . . ......++..+..++|.. +++
T Consensus 112 ~~l~~--~~~e~L~~~~~~~~~----~i~~--~----------~--------------~~~~~~i~~~l~~~~li~-at~ 158 (334)
T 1in4_A 112 HRLNK--AVEELLYSAIEDFQI----DIMI--G----------K--------------GPSAKSIRIDIQPFTLVG-ATT 158 (334)
T ss_dssp GGCCH--HHHHHHHHHHHTSCC----CC-----------------------------------------CCCEEEE-EES
T ss_pred hhcCH--HHHHHHHHHHHhccc----ceee--c----------c--------------CcccccccccCCCeEEEE-ecC
Confidence 76554 788888543221110 0000 0 0 000111333344455543 455
Q ss_pred cccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhcc
Q 001400 298 LVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRAL 356 (1085)
Q Consensus 298 ~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~ 356 (1085)
.+ ..||+|+|||+.++ .+||+.+..++.+.|++.++..
T Consensus 159 ~~-----~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~ 196 (334)
T 1in4_A 159 RS-----GLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLM 196 (334)
T ss_dssp CG-----GGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT
T ss_pred Cc-----ccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc
Confidence 44 35999999998654 7888888999999998877644
No 263
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.78 E-value=1.1e-11 Score=142.11 Aligned_cols=171 Identities=13% Similarity=0.118 Sum_probs=112.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC----------CCCeeeeEEEEcCccCCh----hcccce---EEEEccCCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK----------TGGIIEGDIYISGYPKRQ----ETFARI---SGYCEQNDIH 913 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~----------~~~~~~G~i~i~g~~~~~----~~~~~~---~gy~~Q~~~~ 913 (1085)
.+++|..+||+|+||||||||+++|+|.. +-.+..|.+.++|..... ....+. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 45689999999999999999999999932 123567999998843211 011122 2467777777
Q ss_pred CCCCCHHHHH--HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCC--CE
Q 001400 914 SPGLTVLESL--LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANP--SI 989 (1085)
Q Consensus 914 ~~~~tv~e~l--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p--~i 989 (1085)
.+..+..|++ .|...++.. +.++..++..+ +. .+..+|++. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~------------d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAV------------DAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTC------------SEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHH------------HHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 7776665544 333222211 11111111111 11 112245442 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HHCCceEEEEecCccHHHHHhcCEEE-EEecCc-EEEEecCCCC
Q 001400 990 VFMDEPTSGLDARAAAIVMRTVRNI-VNTGRTIVCTIHQPSIDIFESFDELL-FMKRGG-ELIYAGPLGS 1056 (1085)
Q Consensus 990 lllDEPtsgLD~~~~~~i~~~l~~~-~~~g~tvi~~~H~~~~~~~~~~d~il-~l~~gG-~~~~~g~~~~ 1056 (1085)
+++|||+.++|+......++.+++. .+.|.||+ +|... ++.+.||++. +|.+ | +.++.|+..+
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~-G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTE-TKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHT-TCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhcc-CCceeecCCCCH
Confidence 9999999999999999999999987 66677764 99875 5778899998 7765 6 6777776654
No 264
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.78 E-value=5.2e-10 Score=124.82 Aligned_cols=74 Identities=16% Similarity=0.154 Sum_probs=50.6
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC---CceEEEEccCCC----------
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP---PRTSAYVSQQDW---------- 219 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~---~~~~~yv~Q~d~---------- 219 (1085)
+.+.+|++++|+|||||||||||++|+|+..+. +|+|.+ +|+++..... .+.++||+|++.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~---~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~ 240 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLR---VSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIE 240 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSC
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccccc---ccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCC
Confidence 345679999999999999999999999998876 999999 8887654321 135799999874
Q ss_pred ------CCCCCCHHHHHHHh
Q 001400 220 ------QVAEMTVRETLDFA 233 (1085)
Q Consensus 220 ------~~~~lTV~E~l~f~ 233 (1085)
++|++|+ ||+.|+
T Consensus 241 ~~~~~~l~~~~~~-~n~~~~ 259 (301)
T 1u0l_A 241 PEELKHYFKEFGD-KQCFFS 259 (301)
T ss_dssp HHHHGGGSTTSSS-CCCSST
T ss_pred HHHHHHHHHhccc-ccCcCC
Confidence 4788888 888774
No 265
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.77 E-value=6.2e-09 Score=118.83 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=67.7
Q ss_pred EEEeCCCCCChhHHHHHHHh-hhCCCCceeeEEEECCccCCCCC-CCceEEEEccCCCCCCCCCHHHHHHHhhhhcCCCC
Q 001400 164 TLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFV-PPRTSAYVSQQDWQVAEMTVRETLDFAGQCQGVGS 241 (1085)
Q Consensus 164 ~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~-~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~ 241 (1085)
++|.||||+|||||+++|+| .+.+. .|.+.++|.+..... ....++|++|.+.+....+- .+...
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~---~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~ 105 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPG---VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD----------MGNND 105 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTT---CCC------------------CCEECSSEEEECCC--------------CC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCC---CCeEEecceeecccccccceeeeecccceEEecHhh----------cCCcc
Confidence 89999999999999999999 45554 799999987654321 23567888887643111100 00000
Q ss_pred chhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHHHHH
Q 001400 242 KYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELL 321 (1085)
Q Consensus 242 ~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al 321 (1085)
+ ..++..++.+.-....+.. . .+|| +
T Consensus 106 ~-------------------------------------~~~~~~i~~~~~~~~~~~~-----~-~ls~-----------l 131 (354)
T 1sxj_E 106 R-------------------------------------IVIQELLKEVAQMEQVDFQ-----D-SKDG-----------L 131 (354)
T ss_dssp H-------------------------------------HHHHHHHHHHTTTTC---------------------------
T ss_pred h-------------------------------------HHHHHHHHHHHHhcccccc-----c-cccc-----------c
Confidence 0 0011112211111000111 0 3566 7
Q ss_pred hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChh
Q 001400 322 VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAP 369 (1085)
Q Consensus 322 ~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~ 369 (1085)
.++|+++++|||++ ||..+...+.+.+.+.. .++++|.++|..+
T Consensus 132 ~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~---~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 132 AHRYKCVIINEANS-LTKDAQAALRRTMEKYS---KNIRLIMVCDSMS 175 (354)
T ss_dssp --CCEEEEEECTTS-SCHHHHHHHHHHHHHST---TTEEEEEEESCSC
T ss_pred CCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc---CCCEEEEEeCCHH
Confidence 88999999999999 99999999999998753 2455555556543
No 266
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.74 E-value=1.5e-09 Score=120.47 Aligned_cols=72 Identities=22% Similarity=0.262 Sum_probs=44.5
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE---CCccCCCCCC-Cce-EEEEccCCCCCC----CCCH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY---NGHGFKEFVP-PRT-SAYVSQQDWQVA----EMTV 226 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~---~G~~~~~~~~-~~~-~~yv~Q~d~~~~----~lTV 226 (1085)
+.+.+|++++|+||||||||||+|+|+|...+. +|+|.+ +|...+.... .+. .+|++|.+.+.. .+|+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~---~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~ 244 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLR---TNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE 244 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccccc---ccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH
Confidence 556789999999999999999999999988765 899998 8876543221 112 699999987654 6899
Q ss_pred HHHHH
Q 001400 227 RETLD 231 (1085)
Q Consensus 227 ~E~l~ 231 (1085)
|+|.
T Consensus 245 -e~l~ 248 (307)
T 1t9h_A 245 -EELG 248 (307)
T ss_dssp -HHHG
T ss_pred -HHHH
Confidence 8883
No 267
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.71 E-value=4.3e-12 Score=132.85 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=42.3
Q ss_pred HHH-HHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEEEe
Q 001400 979 IAV-ELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLFMK 1043 (1085)
Q Consensus 979 iA~-aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~l~ 1043 (1085)
.|+ +++.+|++++|||+|+++|..+.+.|.+.|.+..+. +.++|.+ ..||.+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECC
Confidence 455 678888888999999999999999999998886532 2345621 4689887765
No 268
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.70 E-value=1.2e-10 Score=130.43 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=57.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhh
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWL 929 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~ 929 (1085)
++|+++||+|+||||||||+++|+|.....+..|+|.+ ||+..... .++.+|++ |...+.+.+++.+++.+...+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~~-~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQ-VLKERGLM-KKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHH-HHHHHTCT-TCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcHH-HHHhCCEe-ecCCCCCCccHHHHHHHHHHH
Confidence 89999999999999999999999995331124688999 98875432 23456788 777777788999998765443
No 269
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.65 E-value=3e-08 Score=110.27 Aligned_cols=114 Identities=17% Similarity=0.200 Sum_probs=78.5
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHh
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~ 233 (1085)
+++..++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+.. |. ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~-----r~--------------~a~eq---- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE---GKSVVLAAADTF-----RA--------------AAIEQ---- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEEECTT-----CH--------------HHHHH----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhc---CCEEEEEccccc-----cH--------------HHHHH----
Confidence 45667899999999999999999999999998653 567766543210 00 00111
Q ss_pred hhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhh
Q 001400 234 GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKK 313 (1085)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkq 313 (1085)
....++.+|++. ....|||+.+
T Consensus 151 ------------------------------------------------L~~~~~~~gl~~----------~~~~s~~~~~ 172 (306)
T 1vma_A 151 ------------------------------------------------LKIWGERVGATV----------ISHSEGADPA 172 (306)
T ss_dssp ------------------------------------------------HHHHHHHHTCEE----------ECCSTTCCHH
T ss_pred ------------------------------------------------HHHHHHHcCCcE----------EecCCccCHH
Confidence 112233455542 1247899999
Q ss_pred HH---HHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 314 RL---TTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 314 Rv---sia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
++ ++++++..+|+++++|+|.. ......+++.|+.+.+
T Consensus 173 ~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 173 AVAFDAVAHALARNKDVVIIDTAGR---LHTKKNLMEELRKVHR 213 (306)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHHHHHHHHHHH
Confidence 99 89999999999999999974 3444556666665543
No 270
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.64 E-value=1.8e-11 Score=134.78 Aligned_cols=142 Identities=14% Similarity=0.125 Sum_probs=92.4
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---cccceEEEEccCC-CCCCCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQND-IHSPGL 917 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gy~~Q~~-~~~~~~ 917 (1085)
..+++++++.+++| ++|+||||+|||||+++|+|... .|.|.++|.++... ...+.+++++|.. ...|.+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i 106 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----LNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCV 106 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----CEEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEE
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----CCEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCe
Confidence 34677888999999 99999999999999999999654 26899999765321 2234466777753 344555
Q ss_pred CHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Q 001400 918 TVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTS 997 (1085)
Q Consensus 918 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPts 997 (1085)
++.|++.+.+..+.. . . .. ......+... ..|||||+||+.|++|+..+|++| |||+.
T Consensus 107 ~~~Deid~~~~~r~~-----~-~---~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 107 IFFDEVDALCPRRSD-----R-E---TG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred EeeehhhhhhcccCC-----C-c---ch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666665432211100 0 0 00 0111222222 359999999999999999999975 99874
Q ss_pred ------------CCCHHHHHHHHHHH
Q 001400 998 ------------GLDARAAAIVMRTV 1011 (1085)
Q Consensus 998 ------------gLD~~~~~~i~~~l 1011 (1085)
--|...+..|++.+
T Consensus 165 r~gRfd~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 165 RPGRLDKTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp STTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CcccCCeEEEeCCcCHHHHHHHHHHH
Confidence 23666666666554
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=1.9e-09 Score=119.51 Aligned_cols=117 Identities=18% Similarity=0.219 Sum_probs=63.9
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh-cccce-EEEEccCCCCCC----CCCHHH
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE-TFARI-SGYCEQNDIHSP----GLTVLE 921 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~-~~~~~-~gy~~Q~~~~~~----~~tv~e 921 (1085)
++.+|++++|+|+||||||||+++|+|... +..|+|.+ +|...+.. ...+. .||++|.|.+.+ .+|+ |
T Consensus 169 ~~~~G~~~~lvG~sG~GKSTLln~L~g~~~--~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 169 PHFQDKTTVFAGQSGVGKSSLLNAISPELG--LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGTTSEEEEEESHHHHHHHHHHHHCC---------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred hhcCCCEEEEECCCCCCHHHHHHHhccccc--ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-H
Confidence 345799999999999999999999999765 45799988 77654321 12222 799999987764 6789 8
Q ss_pred HHH--Hhhh--h----cCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHH
Q 001400 922 SLL--FSAW--L----RLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRK 975 (1085)
Q Consensus 922 ~l~--~~~~--~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrq 975 (1085)
++. |... + +...-....+....++++++.+++.+.+.... ..|+.|++|
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~ 302 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKD 302 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHT
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhh
Confidence 883 3211 1 11100001112245788999999876432221 146667766
No 272
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.62 E-value=1.7e-10 Score=130.82 Aligned_cols=152 Identities=15% Similarity=0.086 Sum_probs=90.1
Q ss_pred CCeEEeeeeeEEEeCC-------eEEEEEccCCCChhHHHhhhhCCCCC--CeeeeEEEEcCccCCh---hcccceEEEE
Q 001400 840 DRLQLLVNVTGAFRPG-------VLTALVGVSGAGKTTLMDVLAGRKTG--GIIEGDIYISGYPKRQ---ETFARISGYC 907 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~G-------e~~al~G~nGaGKSTLl~~l~g~~~~--~~~~G~i~i~g~~~~~---~~~~~~~gy~ 907 (1085)
++..+++++++.+++| +.++|+||||+|||||+++|+|.... .+.+|.+..++.+... ....+.++|+
T Consensus 29 g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~i 108 (334)
T 1in4_A 29 GQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFI 108 (334)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEE
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEE
Confidence 4455777888888776 88999999999999999999985411 1345555544433221 1124568999
Q ss_pred ccCCCCCCCCCHHHHHHHhhhhcCCCcc--cHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhc
Q 001400 908 EQNDIHSPGLTVLESLLFSAWLRLPSEI--ELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVA 985 (1085)
Q Consensus 908 ~Q~~~~~~~~tv~e~l~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~ 985 (1085)
.|.+.+.+ ++.|++........ .+. ........+++.++.+++.. .... +..||+|+|||+.++
T Consensus 109 DE~~~l~~--~~~e~L~~~~~~~~-~~i~~~~~~~~~~i~~~l~~~~li~-at~~-----~~~Ls~~l~sR~~l~----- 174 (334)
T 1in4_A 109 DEIHRLNK--AVEELLYSAIEDFQ-IDIMIGKGPSAKSIRIDIQPFTLVG-ATTR-----SGLLSSPLRSRFGII----- 174 (334)
T ss_dssp ETGGGCCH--HHHHHHHHHHHTSC-CCC---------------CCCEEEE-EESC-----GGGSCHHHHTTCSEE-----
T ss_pred cchhhcCH--HHHHHHHHHHHhcc-cceeeccCcccccccccCCCeEEEE-ecCC-----cccCCHHHHHhcCce-----
Confidence 99877654 78888753321111 010 01111122333333333322 1211 246999999998654
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
.+||+.+...+.++|++.++
T Consensus 175 -----------~~Ld~~~~~~l~~iL~~~~~ 194 (334)
T 1in4_A 175 -----------LELDFYTVKELKEIIKRAAS 194 (334)
T ss_dssp -----------EECCCCCHHHHHHHHHHHHH
T ss_pred -----------eeCCCCCHHHHHHHHHHHHH
Confidence 77888888888888888764
No 273
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.61 E-value=1.1e-08 Score=119.71 Aligned_cols=53 Identities=13% Similarity=0.018 Sum_probs=48.9
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1085)
..+|+|+|+.|++ ++++|+|||||||||||++|+|.++|. +|+|.++|.++..
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~I~~~g~~~~~ 69 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPD---LTLLNFRNTTEAG 69 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCC---TTTCCCCCTTSCS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCC---CCEEEECCEEccc
Confidence 4589999999999 999999999999999999999999886 8999999987654
No 274
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.60 E-value=1.9e-08 Score=111.88 Aligned_cols=112 Identities=20% Similarity=0.223 Sum_probs=73.5
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSA 927 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~ 927 (1085)
+++..++|++++|+|+|||||||++..|++... ...|+|.+.+.+.... ...|.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~--~~g~kV~lv~~D~~r~-------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV--DEGKSVVLAAADTFRA-------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH--HTTCCEEEEEECTTCH-------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH--hcCCEEEEEccccccH-------------------HHHHH-----
Confidence 344567899999999999999999999998643 1235666655432100 00111
Q ss_pred hhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH---HHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 928 WLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL---TIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl---~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
...+.+.+++.-+ ...|+|+.+++ ++++++..+|+++|+|||.. ....
T Consensus 151 ----------------L~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~ 201 (306)
T 1vma_A 151 ----------------LKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTK 201 (306)
T ss_dssp ----------------HHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCH
T ss_pred ----------------HHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhH
Confidence 1223334444321 24689999999 89999999999999999974 3344
Q ss_pred HHHHHHHHHH
Q 001400 1005 AIVMRTVRNI 1014 (1085)
Q Consensus 1005 ~~i~~~l~~~ 1014 (1085)
..+++.++++
T Consensus 202 ~~l~~eL~~l 211 (306)
T 1vma_A 202 KNLMEELRKV 211 (306)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4555555544
No 275
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.60 E-value=4.4e-09 Score=113.34 Aligned_cols=68 Identities=13% Similarity=0.202 Sum_probs=46.1
Q ss_pred HHHHHHHh--cCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-HCCceEEEEecCccHH-------HHHhcCEEEEEec
Q 001400 977 LTIAVELV--ANPSIVFMDEPTSGL--DARAAAIVMRTVRNIV-NTGRTIVCTIHQPSID-------IFESFDELLFMKR 1044 (1085)
Q Consensus 977 l~iA~aL~--~~p~illlDEPtsgL--D~~~~~~i~~~l~~~~-~~g~tvi~~~H~~~~~-------~~~~~d~il~l~~ 1044 (1085)
+..++.++ .+|+++++|+|++.+ |+......+..+.+++ +.|.|||+++|..... +...+|.++.|.+
T Consensus 117 ~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 117 IEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 33344443 579999999999988 5544444555555554 5699999999976421 3466899999974
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.59 E-value=7.9e-08 Score=113.52 Aligned_cols=179 Identities=11% Similarity=0.119 Sum_probs=103.7
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEEEcCccCChhcccce-EEEEccCCCCCCCCCHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIYISGYPKRQETFARI-SGYCEQNDIHSPGLTVL 920 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~i~g~~~~~~~~~~~-~gy~~Q~~~~~~~~tv~ 920 (1085)
..|+++++-+++|+++.|.|++|+|||||+..+++.... ..| .+.+.+.........++ .+... +...
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~--~~g~~Vl~~s~E~s~~~l~~r~~~~~~-------~~~~- 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVAT--KTNENVAIFSLEMSAQQLVMRMLCAEG-------NINA- 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHH--HSSCCEEEEESSSCHHHHHHHHHHHHH-------TCCH-
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH--hCCCcEEEEECCCCHHHHHHHHHHHHc-------CCCH-
Confidence 346677777999999999999999999999999874320 112 23222221111110000 00000 0000
Q ss_pred HHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCC
Q 001400 921 ESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELV--ANPSIVFMDEPTSG 998 (1085)
Q Consensus 921 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~--~~p~illlDEPtsg 998 (1085)
+.+ +.. ... ......+.++++.++..++.-. . ..++|.+|.+ ..++.++ .+|+++++|+++.-
T Consensus 261 ~~l------~~g-~l~-~~~~~~~~~a~~~l~~~~l~i~---d--~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~ 325 (454)
T 2r6a_A 261 QNL------RTG-KLT-PEDWGKLTMAMGSLSNAGIYID---D--TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLI 325 (454)
T ss_dssp HHH------HTS-CCC-HHHHHHHHHHHHHHHSSCEEEE---C--CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGS
T ss_pred HHH------hcC-CCC-HHHHHHHHHHHHHHhcCCEEEE---C--CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHh
Confidence 001 100 111 1122334455555543332211 1 1368999886 5667776 67999999999987
Q ss_pred CC--------HHHHHHHHHHHHHHHHC-CceEEEEec---------C--ccH-------HHHHhcCEEEEEecCc
Q 001400 999 LD--------ARAAAIVMRTVRNIVNT-GRTIVCTIH---------Q--PSI-------DIFESFDELLFMKRGG 1046 (1085)
Q Consensus 999 LD--------~~~~~~i~~~l~~~~~~-g~tvi~~~H---------~--~~~-------~~~~~~d~il~l~~gG 1046 (1085)
.+ ......+.+.|+.++++ |.+||+++| + |.. .+...+|.+++|.++.
T Consensus 326 ~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 326 QGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 73 33446777888888754 999999999 2 431 2455799999998653
No 277
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.58 E-value=4.9e-09 Score=128.40 Aligned_cols=159 Identities=18% Similarity=0.172 Sum_probs=100.1
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCC---------
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQD--------- 218 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d--------- 218 (1085)
..++++++..+++|+.++|+||||+|||||+++|+|.+++. .-|.+.+++.+.+.. ...++|+++..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~~--~p~i~~~p~g~~~~~~e~~~ 122 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTE--TLEDILVFPNPEDEN--MPRIKTVPACQGRRIVEKYR 122 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCTT--SCEEEEEETTHHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcc--cCCeEEEeCCccccc--CCcEEEEecchHHHHHHHHH
Confidence 35889999999999999999999999999999999998764 248899988776543 34588887753
Q ss_pred -------------CCCCCCCHHHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHH
Q 001400 219 -------------WQVAEMTVRETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYI 285 (1085)
Q Consensus 219 -------------~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 285 (1085)
+.+..+++.+|+... .+...+ .+-+ .. . ....
T Consensus 123 ~~~~~~~~~r~~~~~~~~~~~~~nl~v~-~~~~~~--------------------~~~v---------~~--~---~~~~ 167 (604)
T 3k1j_A 123 EKAKSQESVKSSNMRLKSTVLVPKLLVD-NCGRTK--------------------APFI---------DA--T---GAHA 167 (604)
T ss_dssp HHHHHHTCC-----------CCCEEEEC-CTTCSS--------------------CCEE---------EC--T---TCCH
T ss_pred Hhhccchhhhhhcccccccccccceeec-cccCCC--------------------CCEE---------Ec--C---CCCH
Confidence 222233333332111 000000 0000 00 0 0001
Q ss_pred HHHhCCcccccccccCcccccCchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 286 MKILGLDTCADTLVGDEMLKGISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 286 l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
-+.+|.-.... ....++|+|++|++..+.....++.+||+||+.. |++.....+.+.|.+
T Consensus 168 ~~L~G~~~~~~-----~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 168 GALLGDVRHDP-----FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHCEECCCC-----C----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred HhcCceEEech-----hhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 11223211111 1124699999999999999999999999999998 898888877777764
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.58 E-value=3.1e-07 Score=98.76 Aligned_cols=60 Identities=18% Similarity=0.145 Sum_probs=42.4
Q ss_pred CCCcEeEEeCCCCCC--CHHHHHHHHHHHHHHHhccCCEEEEEEecChhH--------HHhhcCeEEEecC
Q 001400 323 GPARVLFMDEISNGL--DSSTTYQIIKYLKHSTRALDGTTVISLLQPAPE--------AYELFDDVILLSE 383 (1085)
Q Consensus 323 ~~p~vlllDEptsgL--D~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~--------~~~~~D~ii~L~~ 383 (1085)
.+|+++++|+|++.+ |.....+++..+.+.++..+.++++ ++|...+ +.+.+|.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~-~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIF-VSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEE-EEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEE-EecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 6655566667777776665555555 5555544 4678899999964
No 279
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.57 E-value=1.1e-07 Score=105.31 Aligned_cols=142 Identities=14% Similarity=0.149 Sum_probs=87.7
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHHHhhhhcC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLDFAGQCQG 238 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~f~~~~~~ 238 (1085)
++|++++++|||||||||++..|++.+.+. +| +.+.++.++.. ..++.|.+...+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~---~G---------------~~V~lv~~D~~---r~~a~eqL~~~~~--- 158 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLE---KH---------------KKIAFITTDTY---RIAAVEQLKTYAE--- 158 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHT---TC---------------CCEEEEECCCS---STTHHHHHHHHHT---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHh---cC---------------CEEEEEecCcc---cchHHHHHHHHHH---
Confidence 579999999999999999999999998642 34 24667776652 3456666543221
Q ss_pred CCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhhhhHHHHH
Q 001400 239 VGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQKKRLTTG 318 (1085)
Q Consensus 239 ~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGqkqRvsia 318 (1085)
.+|++.. . ..+ ++.-+.+++
T Consensus 159 -------------------------------------------------~~gl~~~----~------~~~-~~~l~~al~ 178 (296)
T 2px0_A 159 -------------------------------------------------LLQAPLE----V------CYT-KEEFQQAKE 178 (296)
T ss_dssp -------------------------------------------------TTTCCCC----B------CSS-HHHHHHHHH
T ss_pred -------------------------------------------------hcCCCeE----e------cCC-HHHHHHHHH
Confidence 1122110 0 011 222355555
Q ss_pred HHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhc--cCCEEEEE-EecChhHHHhhcCeEEEecCCeEEEe
Q 001400 319 ELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRA--LDGTTVIS-LLQPAPEAYELFDDVILLSEGQIVYQ 389 (1085)
Q Consensus 319 ~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~--~~~t~ii~-~~q~~~~~~~~~D~ii~L~~G~iv~~ 389 (1085)
+ +.+++++++| |+|+|+.....+.+..+ .... ...++++. .+|...++.+.+|++..+..+.++..
T Consensus 179 ~--~~~~dlvIiD--T~G~~~~~~~~~~el~~-~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 179 L--FSEYDHVFVD--TAGRNFKDPQYIDELKE-TIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp H--GGGSSEEEEE--CCCCCTTSHHHHHHHHH-HSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred H--hcCCCEEEEe--CCCCChhhHHHHHHHHH-HHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 4 4899999999 99999876654444333 2211 11223332 35666778787887766777777763
No 280
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=1.9e-08 Score=112.20 Aligned_cols=99 Identities=17% Similarity=0.241 Sum_probs=62.4
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEE---cCccCChh--cc-cceEEEEccCCC-------------
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYI---SGYPKRQE--TF-ARISGYCEQNDI------------- 912 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i---~g~~~~~~--~~-~~~~gy~~Q~~~------------- 912 (1085)
+.+|++++|+||||||||||+++|+|... +..|+|.+ +|.++... .+ .+.+||++|.+.
T Consensus 166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~--~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 166 YLKGKISTMAGLSGVGKSSLLNAINPGLK--LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHSSSEEEEECSTTSSHHHHHHHHSTTCC--CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HhcCCeEEEECCCCCcHHHHHHHhccccc--ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 34699999999999999999999999876 46899999 88765421 11 235799999975
Q ss_pred ---CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCC-ccccc
Q 001400 913 ---HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELT-SLSGA 959 (1085)
Q Consensus 913 ---~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~ 959 (1085)
++|.+|+ ||+.|... ... .+....+.++++.++|. +..+.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~-~~~-----~e~~~~v~~~l~~~~L~~~~~~~ 287 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDC-NHV-----DEPECGVKEAVENGEIAESRYEN 287 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTC-CSS-----SCSSCHHHHHHHHTSSCHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCC-cCC-----CCCCcHHHHHHHcCCCCHHHHHH
Confidence 4678888 88877531 111 11224578899999984 44443
No 281
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.54 E-value=1.8e-07 Score=103.73 Aligned_cols=129 Identities=18% Similarity=0.097 Sum_probs=85.1
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
++++++ +|++++++|+||+||||++..|++... ...|++.+.+.+..... + .+.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~--~~~~~v~l~~~d~~~~~------------------~-~~ql-- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK--GKGRRPLLVAADTQRPA------------------A-REQL-- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH--HTTCCEEEEECCSSCHH------------------H-HHHH--
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH--HcCCeEEEecCCcccHh------------------H-HHHH--
Confidence 477887 899999999999999999999999643 22467777665432100 0 0000
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC-CCCCCHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEP-TSGLDARAA 1004 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEP-tsgLD~~~~ 1004 (1085)
..+.+..++.-+... ...+-.+.+|.+|+.+...+++++|+||| ++++|....
T Consensus 146 -------------------~~~~~~~~l~~~~~~-------~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~ 199 (295)
T 1ls1_A 146 -------------------RLLGEKVGVPVLEVM-------DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLM 199 (295)
T ss_dssp -------------------HHHHHHHTCCEEECC-------TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHH
T ss_pred -------------------HHhcccCCeEEEEcC-------CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHH
Confidence 011223344322110 11244456788999988899999999999 999999888
Q ss_pred HHHHHHHHHHHHCCceEEEEec
Q 001400 1005 AIVMRTVRNIVNTGRTIVCTIH 1026 (1085)
Q Consensus 1005 ~~i~~~l~~~~~~g~tvi~~~H 1026 (1085)
..+.+..+.+. ...+++++..
T Consensus 200 ~~l~~~~~~~~-~~~~~lv~~~ 220 (295)
T 1ls1_A 200 GELARLKEVLG-PDEVLLVLDA 220 (295)
T ss_dssp HHHHHHHHHHC-CSEEEEEEEG
T ss_pred HHHHHHhhhcC-CCEEEEEEeC
Confidence 88888777653 4555555543
No 282
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.52 E-value=7.3e-09 Score=108.38 Aligned_cols=71 Identities=18% Similarity=0.182 Sum_probs=49.6
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC---CCceEEEEccCCCCCCCCCHHHHHH
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV---PPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~---~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
|+.+++|++++|+||||||||||+++|+|.++ .+.+++....... ....++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56778999999999999999999999999863 2455554433221 2345789999887777777766654
Q ss_pred H
Q 001400 232 F 232 (1085)
Q Consensus 232 f 232 (1085)
+
T Consensus 74 ~ 74 (205)
T 3tr0_A 74 E 74 (205)
T ss_dssp E
T ss_pred e
Confidence 3
No 283
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.51 E-value=2.9e-07 Score=108.74 Aligned_cols=183 Identities=20% Similarity=0.194 Sum_probs=109.0
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
....|+++.+-+++|++++|.|+||+|||||+..+++...+. .| ..+.|++-+ ++.
T Consensus 189 G~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~---~g---------------~~Vl~~s~E------~s~ 244 (454)
T 2r6a_A 189 GFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATK---TN---------------ENVAIFSLE------MSA 244 (454)
T ss_dssp SCHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHH---SS---------------CCEEEEESS------SCH
T ss_pred CcHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh---CC---------------CcEEEEECC------CCH
Confidence 356799999999999999999999999999999999875321 22 134555432 343
Q ss_pred HHHHHHh-hhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccc
Q 001400 227 RETLDFA-GQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLK 305 (1085)
Q Consensus 227 ~E~l~f~-~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~ 305 (1085)
.+...-. +...+.. .. .+ ..+...+.+.+ ++...++.++..+.. +-+ ..
T Consensus 245 ~~l~~r~~~~~~~~~--~~---~l-----~~g~l~~~~~~---------------~~~~a~~~l~~~~l~---i~d--~~ 294 (454)
T 2r6a_A 245 QQLVMRMLCAEGNIN--AQ---NL-----RTGKLTPEDWG---------------KLTMAMGSLSNAGIY---IDD--TP 294 (454)
T ss_dssp HHHHHHHHHHHHTCC--HH---HH-----HTSCCCHHHHH---------------HHHHHHHHHHSSCEE---EEC--CT
T ss_pred HHHHHHHHHHHcCCC--HH---HH-----hcCCCCHHHHH---------------HHHHHHHHHhcCCEE---EEC--CC
Confidence 3322110 0000100 00 00 00111111111 233334444332221 111 23
Q ss_pred cCchhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCH--------HHHHHHHHHHHHHHhccCCEEEEEEec---------
Q 001400 306 GISGGQKKRLTTGELLV--GPARVLFMDEISNGLDS--------STTYQIIKYLKHSTRALDGTTVISLLQ--------- 366 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~--~~p~vlllDEptsgLD~--------~~~~~i~~~l~~~~~~~~~t~ii~~~q--------- 366 (1085)
++|++|.+ +.++.+. .+|+++++|+++...++ .....+.+.|+.+++..+.++|+ ++|
T Consensus 295 ~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~-~sql~r~~e~~~ 371 (454)
T 2r6a_A 295 SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIA-LSQLSRSVEQRQ 371 (454)
T ss_dssp TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEE-EECCCTTSTTC-
T ss_pred CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE-EecCCcccccCC
Confidence 58999986 5666666 68999999999998743 23467888899988876555554 556
Q ss_pred ---Ch-------hHHHhhcCeEEEecCCeE
Q 001400 367 ---PA-------PEAYELFDDVILLSEGQI 386 (1085)
Q Consensus 367 ---~~-------~~~~~~~D~ii~L~~G~i 386 (1085)
|. ..+...+|.|++|+.++.
T Consensus 372 ~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 372 DKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp --CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 21 146778999999987654
No 284
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.51 E-value=1.5e-07 Score=104.46 Aligned_cols=162 Identities=14% Similarity=0.120 Sum_probs=89.7
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHHHhhhhcCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLLFSAWLRLP 932 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~~~~~~~~~ 932 (1085)
++|++++|+|+||+||||++..|++... +..| +.++++.++.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~--~~~G---------------~~V~lv~~D~~---r~~a~eqL~~~~----- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM--LEKH---------------KKIAFITTDTY---RIAAVEQLKTYA----- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH--HTTC---------------CCEEEEECCCS---STTHHHHHHHHH-----
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH--HhcC---------------CEEEEEecCcc---cchHHHHHHHHH-----
Confidence 4689999999999999999999998543 1123 13455655442 234455543211
Q ss_pred CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 001400 933 SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVR 1012 (1085)
Q Consensus 933 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~ 1012 (1085)
+..++... ...+. ..-+.+|+ .+.+|+++|+| |+|+|+.....+.++.+
T Consensus 158 ----------------~~~gl~~~----------~~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~ 206 (296)
T 2px0_A 158 ----------------ELLQAPLE----------VCYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKE 206 (296)
T ss_dssp ----------------TTTTCCCC----------BCSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHH
T ss_pred ----------------HhcCCCeE----------ecCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHH
Confidence 11122110 01222 23344555 45999999999 99999876655554443
Q ss_pred HHH--HCCceEEEE--ecCccHHHHHhcCEEEEEecCcEEEEecCCCCchHHHHHHHHhccccc
Q 001400 1013 NIV--NTGRTIVCT--IHQPSIDIFESFDELLFMKRGGELIYAGPLGSKSCELIKYFEVESFMF 1072 (1085)
Q Consensus 1013 ~~~--~~g~tvi~~--~H~~~~~~~~~~d~il~l~~gG~~~~~g~~~~~~~~~~~~~~~~~g~~ 1072 (1085)
-+. ....+++++ +|..+ ++.+.++++..+..+|.+.-.-+.......+++..... |+|
T Consensus 207 ~l~~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~-~~p 268 (296)
T 2px0_A 207 TIPFESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAES-KIG 268 (296)
T ss_dssp HSCCCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTC-SCC
T ss_pred HHhhcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHH-CcC
Confidence 322 122234444 78754 46666676655555554432222222334566655543 555
No 285
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.49 E-value=2.9e-07 Score=104.40 Aligned_cols=77 Identities=22% Similarity=0.223 Sum_probs=49.4
Q ss_pred HHHHHHHHHhcC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHH----HHCCceEEEEecCccH-----
Q 001400 975 KRLTIAVELVAN--PSIVFMDEPTSGL----------DA---RAAAIVMRTVRNI----VNTGRTIVCTIHQPSI----- 1030 (1085)
Q Consensus 975 qrl~iA~aL~~~--p~illlDEPtsgL----------D~---~~~~~i~~~l~~~----~~~g~tvi~~~H~~~~----- 1030 (1085)
+.+.++++++.+ |+++++||+++.+ |+ ...+.+.+.++++ .+.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888765 9999999999998 33 1222444555554 3459999999996431
Q ss_pred ----------HHHHhcCEEEEEecCcEEEEec
Q 001400 1031 ----------DIFESFDELLFMKRGGELIYAG 1052 (1085)
Q Consensus 1031 ----------~~~~~~d~il~l~~gG~~~~~g 1052 (1085)
.+...+|.++.+.++ +++..|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~-~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRI-ETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEE-EEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEe-eeeecC
Confidence 134567888888753 444334
No 286
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.45 E-value=1.2e-06 Score=97.11 Aligned_cols=118 Identities=15% Similarity=0.079 Sum_probs=79.3
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHHH
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETLD 231 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l~ 231 (1085)
+++++. +|++++++|+||+||||++..|+|.+.+. .|+|.+.+.+... . .++ +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~---~~~v~l~~~d~~~-----~-------------~~~-~ql- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAADTQR-----P-------------AAR-EQL- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHT---TCCEEEEECCSSC-----H-------------HHH-HHH-
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEecCCccc-----H-------------hHH-HHH-
Confidence 678888 99999999999999999999999998654 6788776643210 0 000 000
Q ss_pred HhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCchhh
Q 001400 232 FAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGISGGQ 311 (1085)
Q Consensus 232 f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LSGGq 311 (1085)
..+.+..|++.... + .+-.-.+
T Consensus 146 ---------------------------------------------------~~~~~~~~l~~~~~---~----~~~~p~~ 167 (295)
T 1ls1_A 146 ---------------------------------------------------RLLGEKVGVPVLEV---M----DGESPES 167 (295)
T ss_dssp ---------------------------------------------------HHHHHHHTCCEEEC---C----TTCCHHH
T ss_pred ---------------------------------------------------HHhcccCCeEEEEc---C----CCCCHHH
Confidence 00112234432110 0 0122234
Q ss_pred hhHHHHHHHHhCCCcEeEEeCC-CCCCCHHHHHHHHHHHHHH
Q 001400 312 KKRLTTGELLVGPARVLFMDEI-SNGLDSSTTYQIIKYLKHS 352 (1085)
Q Consensus 312 kqRvsia~al~~~p~vlllDEp-tsgLD~~~~~~i~~~l~~~ 352 (1085)
-+|.+++++...+++++++|+| ++++|......+.+..+..
T Consensus 168 l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 168 IRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp HHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhc
Confidence 5688999988899999999999 9999988877777766643
No 287
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.42 E-value=9.1e-11 Score=129.58 Aligned_cols=131 Identities=16% Similarity=0.159 Sum_probs=82.8
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CC
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HS 914 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~ 914 (1085)
+.+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.+++.+... ....+.+++++|... ..
T Consensus 59 ~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 132 (278)
T 1iy2_A 59 LKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHA 132 (278)
T ss_dssp HHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSC
T ss_pred HHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcC
Confidence 34456788999999999 89999999999999999998653 5788888764321 111233556666543 45
Q ss_pred CCCCHHHHHHHhhhhcCCC-cccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEe
Q 001400 915 PGLTVLESLLFSAWLRLPS-EIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMD 993 (1085)
Q Consensus 915 ~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlD 993 (1085)
+.+++.|++......+... ..........+.+++ ..|||||+||+.+++++..+|++ +|
T Consensus 133 ~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~--ld 192 (278)
T 1iy2_A 133 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI--LD 192 (278)
T ss_dssp SEEEEEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS--SC
T ss_pred CcEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh--CC
Confidence 6677777774322111100 000111122222222 24799999999999999999986 56
Q ss_pred CC
Q 001400 994 EP 995 (1085)
Q Consensus 994 EP 995 (1085)
++
T Consensus 193 ~~ 194 (278)
T 1iy2_A 193 PA 194 (278)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 288
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.42 E-value=2.1e-08 Score=118.34 Aligned_cols=166 Identities=12% Similarity=0.080 Sum_probs=92.7
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhC--CCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCC-C-CCCHHHH
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAG--RKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHS-P-GLTVLES 922 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g--~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~-~-~~tv~e~ 922 (1085)
.+++.+..+..+.|.|.|||||||++++|.. ... ...|++.+.+.+.+...+... ..-+.+. + -..+.+.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~--~~p~~v~l~liDpK~~el~~~----~~lPhl~~~Vvtd~~~a 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK--AQPEDVRFIMIDPKMLELSVY----EGIPHLLTEVVTDMKDA 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT--CCTTTEEEEEECCSSSGGGGG----TTCTTBSSSCBCSHHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh--CCCceEEEEEECCchhhhhhh----ccCCcccceeecCHHHH
Confidence 4778888999999999999999999999875 121 112444444443322111110 0001111 0 0112221
Q ss_pred HHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHH----------HHHHHHhcCCC-EEE
Q 001400 923 LLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRL----------TIAVELVANPS-IVF 991 (1085)
Q Consensus 923 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl----------~iA~aL~~~p~-ill 991 (1085)
...-.++ ..+..++ .+.++..++.++.+..... ...+|+||+|+. ++|+++...|. +++
T Consensus 233 ~~~L~~~-------~~EmerR-~~ll~~~Gv~~i~~yn~~~--~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlv 302 (512)
T 2ius_A 233 ANALRWC-------VNEMERR-YKLMSALGVRNLAGYNEKI--AEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVL 302 (512)
T ss_dssp HHHHHHH-------HHHHHHH-HHHHHHTTCSSHHHHHHHH--HHHHHTTCCCBCTTC---------CCBCCCCCEEEEE
T ss_pred HHHHHHH-------HHHHHHH-HHHHHHcCCccHHHHHHHH--HHHhhcCCcccccccccccchhccccccccCCcEEEE
Confidence 2111111 1222222 3667777776654321000 013677776642 35666777898 789
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHH----CCceEEEEecCcc
Q 001400 992 MDEPTSGLDARAAAIVMRTVRNIVN----TGRTIVCTIHQPS 1029 (1085)
Q Consensus 992 lDEPtsgLD~~~~~~i~~~l~~~~~----~g~tvi~~~H~~~ 1029 (1085)
+||+++-+|.. ...+.+.+.++++ .|.++|++||+|+
T Consensus 303 IDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 303 VDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99999999843 3455666666543 3779999999997
No 289
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.41 E-value=9.9e-11 Score=127.40 Aligned_cols=132 Identities=16% Similarity=0.154 Sum_probs=82.7
Q ss_pred CCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCC-CCC
Q 001400 840 DRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDI-HSP 915 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~-~~~ 915 (1085)
.+..+++++++.+++| ++|+||||+|||||+++|++... .|.+.++|.+... ....+.+++++|... ..+
T Consensus 36 ~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 109 (254)
T 1ixz_A 36 KNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP 109 (254)
T ss_dssp HCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT----CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS
T ss_pred HCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC----CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC
Confidence 3445788999999999 99999999999999999998653 5778888764321 111233456666532 456
Q ss_pred CCCHHHHHHHhhhhcCC-CcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Q 001400 916 GLTVLESLLFSAWLRLP-SEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDE 994 (1085)
Q Consensus 916 ~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDE 994 (1085)
.+++.|++......+.. ...........+.+++. .|||||+||+.+++++..+|++ +|+
T Consensus 110 ~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~ 169 (254)
T 1ixz_A 110 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDP 169 (254)
T ss_dssp EEEEEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCG
T ss_pred eEEEehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCH
Confidence 66777777322211110 00011111222222221 4789999999999999999986 677
Q ss_pred CCC
Q 001400 995 PTS 997 (1085)
Q Consensus 995 Pts 997 (1085)
+.-
T Consensus 170 ~l~ 172 (254)
T 1ixz_A 170 ALL 172 (254)
T ss_dssp GGG
T ss_pred HHc
Confidence 653
No 290
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.40 E-value=5.6e-08 Score=100.59 Aligned_cols=43 Identities=9% Similarity=0.142 Sum_probs=36.6
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKH 351 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~ 351 (1085)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4443445688999999999999999 999999999999998865
No 291
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.39 E-value=3.6e-08 Score=115.48 Aligned_cols=51 Identities=22% Similarity=0.134 Sum_probs=45.2
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
..+|++|||+|++ +++||+||||||||||+++|+|... +.+|+|.++|.++
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI--PDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC--CCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC--CCCCEEEECCEEc
Confidence 3468899999999 9999999999999999999999765 4579999999764
No 292
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.38 E-value=1.5e-09 Score=118.11 Aligned_cols=47 Identities=36% Similarity=0.541 Sum_probs=42.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++
T Consensus 39 ~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 39 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 5899999999999 99999999999999999999874 68888888654
No 293
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.38 E-value=1.9e-09 Score=118.84 Aligned_cols=76 Identities=25% Similarity=0.347 Sum_probs=54.0
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCC---CceEEEEccCCC-CCCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVP---PRTSAYVSQQDW-QVAEM 224 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~---~~~~~yv~Q~d~-~~~~l 224 (1085)
.+++++++.+++| ++|+||||||||||+++|++.+. .|.|.++|.++..... .+.+++++|... ..+.+
T Consensus 63 ~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i 135 (278)
T 1iy2_A 63 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCI 135 (278)
T ss_dssp HHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEE
T ss_pred HHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-----CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcE
Confidence 5899999999999 99999999999999999999874 6889888865432211 123445555432 34445
Q ss_pred CHHHHHH
Q 001400 225 TVRETLD 231 (1085)
Q Consensus 225 TV~E~l~ 231 (1085)
++.|++.
T Consensus 136 ~~iDeid 142 (278)
T 1iy2_A 136 VFIDEID 142 (278)
T ss_dssp EEEETHH
T ss_pred EehhhhH
Confidence 5555553
No 294
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.35 E-value=7.9e-09 Score=126.51 Aligned_cols=162 Identities=15% Similarity=0.106 Sum_probs=99.5
Q ss_pred cCCeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCC------
Q 001400 839 EDRLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDI------ 912 (1085)
Q Consensus 839 ~~~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~------ 912 (1085)
++...+++++++.+++|+.++|+||||+|||||+++|++.... ...|.+.+++.+... ....++||++...
T Consensus 44 ~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~~~~~~~~~~~~--~~p~i~~~p~g~~~~~~e~ 120 (604)
T 3k1j_A 44 IGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPT-ETLEDILVFPNPEDE--NMPRIKTVPACQGRRIVEK 120 (604)
T ss_dssp CSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCC-SSCEEEEEECCTTCT--TSCEEEEEETTHHHHHHHH
T ss_pred ECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCc-ccCCeEEEeCCcccc--cCCcEEEEecchHHHHHHH
Confidence 3556788899999999999999999999999999999996543 123788888766432 3445788876431
Q ss_pred ----------------CCCCCCHHHHHHHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHH
Q 001400 913 ----------------HSPGLTVLESLLFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKR 976 (1085)
Q Consensus 913 ----------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqr 976 (1085)
.+..+++.+|+.....-..+...... . .....++++........ ..++|+|++|+
T Consensus 121 ~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~---~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~ 191 (604)
T 3k1j_A 121 YREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-T---GAHAGALLGDVRHDPFQ-----SGGLGTPAHER 191 (604)
T ss_dssp HHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-T---TCCHHHHHCEECCCCC---------CCCCGGGG
T ss_pred HHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-C---CCCHHhcCceEEechhh-----cCCcccccccc
Confidence 11111221221110000000000000 0 00011122221111111 13689999999
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRN 1013 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~ 1013 (1085)
+..++...+++.+|||||... |++..+..+.+.|.+
T Consensus 192 i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 192 VEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp EECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999999988 899999888888875
No 295
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.34 E-value=3.8e-07 Score=103.12 Aligned_cols=32 Identities=34% Similarity=0.396 Sum_probs=28.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+-+++|+++.|.||||||||||+..+++...+
T Consensus 56 GGi~~G~i~~I~GppGsGKSTLal~la~~~~~ 87 (356)
T 3hr8_A 56 GGYPRGRIVEIFGQESSGKTTLALHAIAEAQK 87 (356)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 46899999999999999999999999987643
No 296
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.32 E-value=2e-08 Score=105.06 Aligned_cols=70 Identities=21% Similarity=0.184 Sum_probs=46.4
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
|+++++|++++|+||||||||||+++|+|..+ .+.+++..... ....+.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56678999999999999999999999999642 24445433221 112445789999876666656555543
No 297
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.30 E-value=1.8e-07 Score=96.72 Aligned_cols=38 Identities=18% Similarity=0.251 Sum_probs=33.8
Q ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001400 975 KRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNI 1014 (1085)
Q Consensus 975 qrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~ 1014 (1085)
+...+|++++.+|+++++| ||++|......+++.|.+.
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 3467899999999999999 9999999999999988763
No 298
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.28 E-value=1.8e-07 Score=110.37 Aligned_cols=167 Identities=12% Similarity=0.055 Sum_probs=87.7
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHh-hhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCC--CHHHH
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAG-RLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEM--TVRET 229 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G-~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~l--TV~E~ 229 (1085)
.+++.+.++..++|.|++||||||+|++|.. ++... ..|+|.+.+.+.+... .+.-..+|++ +|.++
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~--~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKA--QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTD 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTC--CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhC--CCceEEEEEECCchhh--------hhhhccCCcccceeecC
Confidence 3778888999999999999999999999875 33221 1466655554432210 0100012221 22222
Q ss_pred HHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCccccc--ccccCcccccC
Q 001400 230 LDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCAD--TLVGDEMLKGI 307 (1085)
Q Consensus 230 l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~d--t~vg~~~~~~L 307 (1085)
...+.... .....++ +.+ ...++..|+.+..+ ..+. ..+
T Consensus 229 ~~~a~~~L-----~~~~~Em-----------------------------erR-~~ll~~~Gv~~i~~yn~~~~----~~~ 269 (512)
T 2ius_A 229 MKDAANAL-----RWCVNEM-----------------------------ERR-YKLMSALGVRNLAGYNEKIA----EAD 269 (512)
T ss_dssp HHHHHHHH-----HHHHHHH-----------------------------HHH-HHHHHHTTCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHH-----HHHHHHH-----------------------------HHH-HHHHHHcCCccHHHHHHHHH----HHh
Confidence 22111100 0000111 112 24566667655322 1111 248
Q ss_pred chhhhhHH----------HHHHHHhCCCc-EeEEeCCCCCCCHHHHHHHHHHHHHHHhccC--CEEEEEEecChh
Q 001400 308 SGGQKKRL----------TTGELLVGPAR-VLFMDEISNGLDSSTTYQIIKYLKHSTRALD--GTTVISLLQPAP 369 (1085)
Q Consensus 308 SGGqkqRv----------sia~al~~~p~-vlllDEptsgLD~~~~~~i~~~l~~~~~~~~--~t~ii~~~q~~~ 369 (1085)
||||+||. .+++++...|. ++++||++.-+|.. ...+.+.+.++++... +..++..+|...
T Consensus 270 s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 270 RMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 99998863 34556677887 89999999998843 3445555555543221 334444555543
No 299
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.27 E-value=1e-06 Score=99.89 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=26.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+-+++|+++.|.||||||||||+..++...
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988888654
No 300
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.24 E-value=5.2e-08 Score=103.38 Aligned_cols=59 Identities=15% Similarity=0.072 Sum_probs=40.3
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-----------CCceEEEEccC
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-----------PPRTSAYVSQQ 217 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-----------~~~~~~yv~Q~ 217 (1085)
++.+.+ ++++|+|||||||||||++|+|.+.|. +|+|.++|.++.... .++.++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~---~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPD---LTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCC---TTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccC---CCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 455666 899999999999999999999999886 899999998762211 13567888874
No 301
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.22 E-value=3.1e-07 Score=98.07 Aligned_cols=40 Identities=20% Similarity=0.137 Sum_probs=23.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHH-hhhCC
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALA-GRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~-G~l~~ 187 (1085)
.+..+++|+.+++|++++|+||||||||||+++|+ |.+++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35789999999999999999999999999999999 98743
No 302
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.15 E-value=1.2e-06 Score=91.12 Aligned_cols=37 Identities=16% Similarity=0.289 Sum_probs=32.3
Q ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001400 977 LTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIV 1015 (1085)
Q Consensus 977 l~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~ 1015 (1085)
...|++++.+|+++++| ||++|......+++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 35689999999999999 99999999999998887653
No 303
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.11 E-value=7.3e-06 Score=96.35 Aligned_cols=61 Identities=16% Similarity=0.221 Sum_probs=39.2
Q ss_pred hhhhhHHHHHHHHhCCCcEeEEeCC----------CCCCCHHHHHHHHHHHHHHHh--ccCCEEEEEEecChh
Q 001400 309 GGQKKRLTTGELLVGPARVLFMDEI----------SNGLDSSTTYQIIKYLKHSTR--ALDGTTVISLLQPAP 369 (1085)
Q Consensus 309 GGqkqRvsia~al~~~p~vlllDEp----------tsgLD~~~~~~i~~~l~~~~~--~~~~t~ii~~~q~~~ 369 (1085)
|+++.|..+++|....|.|||+||+ +.|.|......+.+.|..+-. ...+.+||..++...
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5678888899999999999999999 346676665556666655432 123456666666543
No 304
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.09 E-value=1.6e-06 Score=98.86 Aligned_cols=161 Identities=17% Similarity=0.061 Sum_probs=87.4
Q ss_pred CCeE-EEEeCCCCCChhHHHHHHHhhhCCC--------CceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCHHHHH
Q 001400 160 PSRL-TLLLGPPSSGKTTLLLALAGRLGHH--------LQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTVRETL 230 (1085)
Q Consensus 160 ~G~~-~~llGp~GsGKSTLL~~L~G~l~~~--------~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV~E~l 230 (1085)
+|-. ++|+|+||||||||+++|+|..... ...+|.|.++|.++. ...+.|++.|.+...-+ ..+.++
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~~lve-~f~~tl 252 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPPQIVD-AFFVTL 252 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCGGGHH-HHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCHHHHH-HHHHHH
Confidence 3444 9999999999999999999975310 135789999885431 11233444442211000 011122
Q ss_pred HHhhhhcCCCCchhhhHHHHHHHHHhCCCCCch--HHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCcccccCc
Q 001400 231 DFAGQCQGVGSKYDMITELARREKIAGIKPDED--LDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKGIS 308 (1085)
Q Consensus 231 ~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d--~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~LS 308 (1085)
.........-.-++ . .+++ .+. ....+..+++.+++.+..--.|++. ..-+|
T Consensus 253 ~~~~~aD~il~VvD-------------~-s~~~~~~~~-----------~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~ 306 (364)
T 2qtf_A 253 SEAKYSDALILVID-------------S-TFSENLLIE-----------TLQSSFEILREIGVSGKPILVTLNK-IDKIN 306 (364)
T ss_dssp HGGGGSSEEEEEEE-------------T-TSCHHHHHH-----------HHHHHHHHHHHHTCCSCCEEEEEEC-GGGCC
T ss_pred HHHHhCCEEEEEEE-------------C-CCCcchHHH-----------HHHHHHHHHHHhCcCCCCEEEEEEC-CCCCC
Confidence 11100000000000 0 0010 000 0123566788888765543444543 34578
Q ss_pred hhhhhHHHHH----HHH-hCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHh
Q 001400 309 GGQKKRLTTG----ELL-VGPARVLFMDEISNGLDSSTTYQIIKYLKHSTR 354 (1085)
Q Consensus 309 GGqkqRvsia----~al-~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~ 354 (1085)
+|+++|+.++ +++ ..+|++ +|+|++|......+++.|.+...
T Consensus 307 ~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 307 GDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp SCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 8888988887 555 334444 89999999999999998887654
No 305
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.08 E-value=1.9e-07 Score=97.43 Aligned_cols=70 Identities=16% Similarity=0.083 Sum_probs=48.9
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC--CCceEEEEccCCCCCCCCCHHHHHHH
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV--PPRTSAYVSQQDWQVAEMTVRETLDF 232 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~--~~~~~~yv~Q~d~~~~~lTV~E~l~f 232 (1085)
...++|++++|+||||||||||+++|+|.+ |.+.++|.++.... .....++++|++...+.+++.+++..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHH
Confidence 455789999999999999999999999976 77888887653210 01235778887655555666666654
No 306
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.04 E-value=1.5e-07 Score=99.86 Aligned_cols=59 Identities=19% Similarity=0.115 Sum_probs=39.7
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-----------hcccceEEEEccC
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-----------ETFARISGYCEQN 910 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-----------~~~~~~~gy~~Q~ 910 (1085)
++++.+ ++++|+||||||||||+++|+|... +.+|+|.++|.+... ...++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~--~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI--PDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS--CCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc--cCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 8999999999999999999999765 347889888876521 1234568999974
No 307
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.04 E-value=1.1e-06 Score=93.90 Aligned_cols=38 Identities=32% Similarity=0.261 Sum_probs=22.9
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhh-CCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLA-GRKT 880 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~-g~~~ 880 (1085)
+..+++||++++|++++|+||||||||||+++|+ |...
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4567999999999999999999999999999999 8753
No 308
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.02 E-value=1.2e-06 Score=99.11 Aligned_cols=28 Identities=25% Similarity=0.381 Sum_probs=26.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
-+++|+++.|.||+|+|||||+..+++.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999999874
No 309
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.01 E-value=4.4e-06 Score=98.21 Aligned_cols=59 Identities=20% Similarity=0.290 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----HCCceEEEEecCcc
Q 001400 971 TEQRKRLTIAVELVANPSIVFMDEP----------TSGLDARAAAIVMRTVRNIV----NTGRTIVCTIHQPS 1029 (1085)
Q Consensus 971 ~Gqrqrl~iA~aL~~~p~illlDEP----------tsgLD~~~~~~i~~~l~~~~----~~g~tvi~~~H~~~ 1029 (1085)
+++++|-.+++|....|.|||+||+ ++|.|......+.+++..+- ..+..||.+||+++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 5778888899999999999999999 34677777777777777653 24678999999975
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.98 E-value=6.9e-06 Score=85.17 Aligned_cols=39 Identities=13% Similarity=0.216 Sum_probs=33.3
Q ss_pred hHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001400 313 KRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHST 353 (1085)
Q Consensus 313 qRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~ 353 (1085)
.....|++++.+|+++++| ||++|......+++.|.+..
T Consensus 128 ~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 128 VPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999 99999999999998887543
No 311
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.97 E-value=3.7e-06 Score=85.97 Aligned_cols=36 Identities=22% Similarity=0.206 Sum_probs=33.1
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCC
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHH 188 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~ 188 (1085)
+++++.+.+| +++|+||||||||||+++|.+.+.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~ 53 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGL 53 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCC
Confidence 7889999999 99999999999999999999988653
No 312
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.96 E-value=3.2e-07 Score=95.71 Aligned_cols=55 Identities=22% Similarity=0.199 Sum_probs=37.4
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh--cccceEEEEccC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE--TFARISGYCEQN 910 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~--~~~~~~gy~~Q~ 910 (1085)
...++|++++|+|+||||||||+++|++.. |.+.++|.+.... ......|+++|+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~------g~~~i~~d~~~~~~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET------GLEFAEADAFHSPENIATMQRGIPLTD 80 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH------CCEEEEGGGGSCHHHHHHHHTTCCCCH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh------CCeEEcccccccHHHHHHHhcCCCCCC
Confidence 455789999999999999999999999743 7788888664321 111234566654
No 313
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.95 E-value=8.3e-06 Score=91.52 Aligned_cols=139 Identities=17% Similarity=0.179 Sum_probs=88.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCCCCH
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAEMTV 226 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~lTV 226 (1085)
...-|+.+.+-++||+++.|.|+||+|||||+.-++..... +| ..+.|++= +++.
T Consensus 32 G~~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~----------~g---------~~Vl~fSl------Ems~ 86 (338)
T 4a1f_A 32 GFVQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALN----------DD---------RGVAVFSL------EMSA 86 (338)
T ss_dssp SCHHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHH----------TT---------CEEEEEES------SSCH
T ss_pred CChHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH----------cC---------CeEEEEeC------CCCH
Confidence 34567888888999999999999999999999999865421 11 13455442 3455
Q ss_pred HHHHHHhhhhcCCCCchhhhHHHHHHHHHhCCCCCchHHHHHHHhhhcCcchhHHHHHHHHHhCCcccccccccCccccc
Q 001400 227 RETLDFAGQCQGVGSKYDMITELARREKIAGIKPDEDLDIFMKSFALGGQKTSLVVEYIMKILGLDTCADTLVGDEMLKG 306 (1085)
Q Consensus 227 ~E~l~f~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~dt~vg~~~~~~ 306 (1085)
.+...= + ... ..+ +.+....+ ..
T Consensus 87 ~ql~~R---l-------------ls~--~~~-------------------------------v~~~~l~~--------g~ 109 (338)
T 4a1f_A 87 EQLALR---A-------------LSD--LTS-------------------------------INMHDLES--------GR 109 (338)
T ss_dssp HHHHHH---H-------------HHH--HHC-------------------------------CCHHHHHH--------TC
T ss_pred HHHHHH---H-------------HHH--hhC-------------------------------CCHHHHhc--------CC
Confidence 443310 0 000 000 00110000 14
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEEecC
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~L~~ 383 (1085)
||+++.+|++.|...+.++++++.|+|... ..+|...++.+.+..++..+|++ |.+-+|..
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVI-----------DyLqlm~~ 170 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFI-----------DYLQLMSG 170 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEE-----------EEEECCCT
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEE-----------echHHhcC
Confidence 999999999999999999999999998643 33566666666554424555555 77777754
No 314
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.94 E-value=7.3e-06 Score=93.43 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=83.5
Q ss_pred CeE-EEEEccCCCChhHHHhhhhCCCCC---------CeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHH---
Q 001400 855 GVL-TALVGVSGAGKTTLMDVLAGRKTG---------GIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLE--- 921 (1085)
Q Consensus 855 Ge~-~al~G~nGaGKSTLl~~l~g~~~~---------~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e--- 921 (1085)
|-. ++|+|++|||||||++.|+|.... ++..|.+.++|.+.. +....|++.+.+. ..+..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~---l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM---LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE---EEECCCBCSSCCG----GGHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE---EEeCCCchhcCCH----HHHHHHHH
Confidence 444 899999999999999999995421 145688988885431 1122344443221 11111
Q ss_pred HHHHh--hh--h--cCCCccc--HHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHH----HHH-hcCCC
Q 001400 922 SLLFS--AW--L--RLPSEIE--LETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIA----VEL-VANPS 988 (1085)
Q Consensus 922 ~l~~~--~~--~--~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA----~aL-~~~p~ 988 (1085)
.+... +. + ....+.. .......+.++++.+++.+..--.+.. ....+|+++++++.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~N-K~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLN-KIDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEE-CGGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEE-CCCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 11100 00 0 0001111 122333456677777654432101110 1234687888888877 555 43445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001400 989 IVFMDEPTSGLDARAAAIVMRTVRNIVN 1016 (1085)
Q Consensus 989 illlDEPtsgLD~~~~~~i~~~l~~~~~ 1016 (1085)
+ +|+|++|......+.+.|.+...
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988653
No 315
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.88 E-value=4.2e-06 Score=87.26 Aligned_cols=31 Identities=23% Similarity=0.193 Sum_probs=27.3
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+++|++++|+|||||||||++++|++.+.+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST 32 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 5789999999999999999999999998854
No 316
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.88 E-value=3e-06 Score=94.87 Aligned_cols=81 Identities=15% Similarity=0.003 Sum_probs=61.0
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCC-------C-----CceEEEE-cc
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFV-------P-----PRTSAYV-SQ 216 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~-------~-----~~~~~yv-~Q 216 (1085)
+++++++.+++|++++|+|||||||||++..|++.+.+. .|+|.+.+.+..... . +..+.++ +|
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~---g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~ 170 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAEL---GYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKAN 170 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHT---TCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCS
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCC
Confidence 457899999999999999999999999999999998654 789998876653210 1 4467888 77
Q ss_pred CCCCCCCCCHHHHHHHh
Q 001400 217 QDWQVAEMTVRETLDFA 233 (1085)
Q Consensus 217 ~d~~~~~lTV~E~l~f~ 233 (1085)
.....|..++.+++..+
T Consensus 171 ~~~~~p~~~~~~~l~~~ 187 (320)
T 1zu4_A 171 KLNADPASVVFDAIKKA 187 (320)
T ss_dssp STTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 65555555677777553
No 317
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.87 E-value=6.9e-06 Score=102.89 Aligned_cols=74 Identities=11% Similarity=0.111 Sum_probs=56.2
Q ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEE-ecCccHHHHHhcCEEEEE
Q 001400 968 GLSTEQRKRLTIAVELVANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCT-IHQPSIDIFESFDELLFM 1042 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~-~H~~~~~~~~~~d~il~l 1042 (1085)
-+|.|+.+|..++..++.++++|++|||.. +||......+++.+.......++|+++ ||+++ .+.+.++..-++
T Consensus 190 v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~~~vi 265 (773)
T 2xau_A 190 YMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFNDAPLL 265 (773)
T ss_dssp EEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTSCCEE
T ss_pred EECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcCCCcc
Confidence 479999999999999999999999999997 999877666666665544345677775 88765 466666643333
No 318
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.85 E-value=6.4e-06 Score=85.69 Aligned_cols=41 Identities=27% Similarity=0.105 Sum_probs=25.8
Q ss_pred cceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 146 SKLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 146 ~~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
....+++|||+.+++|+.++|+|||||||||+.+.|++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 10 GVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp --------------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34579999999999999999999999999999999998874
No 319
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.84 E-value=3.4e-07 Score=108.26 Aligned_cols=49 Identities=37% Similarity=0.532 Sum_probs=42.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKE 204 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~ 204 (1085)
.+++++++.+++| ++|+||||+|||||+++|+|... .|.+.++|.++.+
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-----~~~i~i~g~~~~~ 102 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-----VPFITASGSDFVE 102 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-----CCEEEEEGGGGTS
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-----CCEEEEehhHHHH
Confidence 4789999999999 99999999999999999999874 6788899876543
No 320
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.79 E-value=6.4e-06 Score=84.72 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=24.8
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
|++++|+||||||||||+++|+|.+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 578999999999999999999998864
No 321
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.77 E-value=4.4e-05 Score=86.97 Aligned_cols=61 Identities=11% Similarity=0.177 Sum_probs=48.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHHCCceEEEEe--cCcc
Q 001400 967 NGLSTEQRKRLTIAVELVANPSIVFMD-EPTSGLDARAAAIVMRTVRNIVNTGRTIVCTI--HQPS 1029 (1085)
Q Consensus 967 ~~LS~Gqrqrl~iA~aL~~~p~illlD-EPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~--H~~~ 1029 (1085)
..+|++++|++. +.+...++-++++| +|++++|......+.+.+..... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 358999998776 55555677788999 99999999988888877776543 78888888 8864
No 322
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.74 E-value=2.1e-05 Score=98.52 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=57.2
Q ss_pred cccCchhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeE
Q 001400 304 LKGISGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDV 378 (1085)
Q Consensus 304 ~~~LSGGqkqRvsia~al~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~i 378 (1085)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+..... ...+++++.+++...+.+++++.
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCCHHHHHHTTSC
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccHHHHHHHhcCC
Confidence 34589999999999999999999999999996 9998877777776664432 12355566677877777888753
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.73 E-value=3.4e-06 Score=87.84 Aligned_cols=52 Identities=25% Similarity=0.307 Sum_probs=42.9
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEE--EECCccC
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKI--TYNGHGF 202 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i--~~~G~~~ 202 (1085)
.....+.++...++|++++|+|||||||||++++|++.+. . .|.+ .++|.++
T Consensus 11 ~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~---~G~~~~~~d~d~~ 64 (200)
T 3uie_A 11 SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-Q---KGKLCYILDGDNV 64 (200)
T ss_dssp CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-H---TTCCEEEEEHHHH
T ss_pred ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-h---cCceEEEecCchh
Confidence 3456677788889999999999999999999999999985 2 5766 7777554
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.73 E-value=1.5e-05 Score=89.33 Aligned_cols=127 Identities=16% Similarity=0.162 Sum_probs=77.4
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHHH
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESLL 924 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l~ 924 (1085)
|+.+..-+++|+++.|.|++|+|||||+.-++.... . .|. .+.|+. ..++..+-..
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a---~------~g~---------~Vl~fS------lEms~~ql~~ 91 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL---N------DDR---------GVAVFS------LEMSAEQLAL 91 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH---H------TTC---------EEEEEE------SSSCHHHHHH
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---H------cCC---------eEEEEe------CCCCHHHHHH
Confidence 344555689999999999999999999988875321 0 111 122322 1233332211
Q ss_pred HhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Q 001400 925 FSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAA 1004 (1085)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~ 1004 (1085)
++......+++..+.+ ..||.++++|++.|...+.++++++.|+|...+|
T Consensus 92 ------------------Rlls~~~~v~~~~l~~--------g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~---- 141 (338)
T 4a1f_A 92 ------------------RALSDLTSINMHDLES--------GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE---- 141 (338)
T ss_dssp ------------------HHHHHHHCCCHHHHHH--------TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH----
T ss_pred ------------------HHHHHhhCCCHHHHhc--------CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH----
Confidence 0111111111111111 2599999999999999999999999999876543
Q ss_pred HHHHHHHHHHHH-C-CceEEEEec
Q 001400 1005 AIVMRTVRNIVN-T-GRTIVCTIH 1026 (1085)
Q Consensus 1005 ~~i~~~l~~~~~-~-g~tvi~~~H 1026 (1085)
.|...++++.+ . |..+|+|-|
T Consensus 142 -~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -HHHHHHHHHHHhcCCCCEEEEec
Confidence 45555666543 3 677777754
No 325
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.69 E-value=5.3e-06 Score=89.42 Aligned_cols=40 Identities=35% Similarity=0.423 Sum_probs=37.2
Q ss_pred eeecccceeeEeC---CeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 148 LTILDDLSGIIRP---SRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~---G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.++|+|+|+.|++ |+.++|+|++||||||+.++|++.+..
T Consensus 32 ~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~ 74 (250)
T 3nwj_A 32 QQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGY 74 (250)
T ss_dssp CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred chhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 4699999999999 999999999999999999999998753
No 326
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.66 E-value=3.4e-06 Score=91.34 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=44.5
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEE--------ECCccCCCCC----CCceEEEEccC
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKIT--------YNGHGFKEFV----PPRTSAYVSQQ 217 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~--------~~G~~~~~~~----~~~~~~yv~Q~ 217 (1085)
++++.+ ++|++++|+|||||||||++++|+.+++-....+|.|. .+|.++.... ..+.+++++|.
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 78999999999999999999999933322223489988 8887764321 12456778765
Q ss_pred C
Q 001400 218 D 218 (1085)
Q Consensus 218 d 218 (1085)
+
T Consensus 96 ~ 96 (252)
T 4e22_A 96 Q 96 (252)
T ss_dssp E
T ss_pred C
Confidence 3
No 327
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.62 E-value=1.2e-05 Score=83.62 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=25.8
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++++|++++|+|+||||||||+++|++..
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 57899999999999999999999999865
No 328
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.60 E-value=3e-06 Score=91.30 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=34.8
Q ss_pred CCeEEeeeeeEEEeC---CeEEEEEccCCCChhHHHhhhhCC
Q 001400 840 DRLQLLVNVTGAFRP---GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 840 ~~~~~L~~vs~~i~~---Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+...+|+|+|++|++ |++++|+|++||||||+.++|++.
T Consensus 30 ~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~ 71 (250)
T 3nwj_A 30 EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71 (250)
T ss_dssp --CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHH
T ss_pred CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 345689999999999 999999999999999999999974
No 329
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.59 E-value=1.1e-07 Score=112.46 Aligned_cols=75 Identities=23% Similarity=0.228 Sum_probs=50.9
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChh---cccceEEEEccCCC-CCCCCC
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQE---TFARISGYCEQNDI-HSPGLT 918 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~---~~~~~~gy~~Q~~~-~~~~~t 918 (1085)
.+++++++.+++| +.|+||||+|||||+++|++... .+-+.++|.+.... ...+.+.+++|... ..|.+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il 127 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 127 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEE
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEE
Confidence 4567888889888 89999999999999999998643 46788888654221 11223445566543 345555
Q ss_pred HHHHH
Q 001400 919 VLESL 923 (1085)
Q Consensus 919 v~e~l 923 (1085)
+.|++
T Consensus 128 ~IDEI 132 (499)
T 2dhr_A 128 FIDEI 132 (499)
T ss_dssp EEECG
T ss_pred EEehH
Confidence 55555
No 330
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.59 E-value=1.6e-05 Score=90.68 Aligned_cols=44 Identities=36% Similarity=0.328 Sum_probs=39.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
..+|+++++.+++|++++|+||||||||||+++|+|.+ .|.+..
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~------~g~~~~ 199 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC------GGKALN 199 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH------CCEEEC
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc------CCcEEE
Confidence 46899999999999999999999999999999999975 566654
No 331
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.58 E-value=3e-05 Score=79.18 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=30.6
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEEC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYN 198 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~ 198 (1085)
.+|++++|+||||||||||+++|++.+++ ...|.|.+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~--~~~~~i~~t 40 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPD--RFAYPIPHT 40 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTT--TEECCCCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCc--cEEEeeecc
Confidence 36899999999999999999999998753 235666543
No 332
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.57 E-value=1.9e-05 Score=97.31 Aligned_cols=133 Identities=17% Similarity=0.101 Sum_probs=71.2
Q ss_pred eEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHHHHH
Q 001400 849 TGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLESLLF 925 (1085)
Q Consensus 849 s~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~l~~ 925 (1085)
|+.+++|..++|+|++|+|||||++.|++....-...|+| .+|..... ....+.+++..|...+... +
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~------- 73 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-G------- 73 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-T-------
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-C-------
Confidence 3456789999999999999999999999643211134655 44443221 1122233333332111100 0
Q ss_pred hhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Q 001400 926 SAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAA 1005 (1085)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~ 1005 (1085)
....++-.||-..++ .......-..+.-++++| |+.|+++.+..
T Consensus 74 ------------------------------~~~nliDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~~ 117 (665)
T 2dy1_A 74 ------------------------------HRVFLLDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTER 117 (665)
T ss_dssp ------------------------------EEEEEEECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHHH
T ss_pred ------------------------------EEEEEEeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHHH
Confidence 000011112111121 112223335677888999 99999988774
Q ss_pred HHHHHHHHHHHCCceEEEEecCccH
Q 001400 1006 IVMRTVRNIVNTGRTIVCTIHQPSI 1030 (1085)
Q Consensus 1006 ~i~~~l~~~~~~g~tvi~~~H~~~~ 1030 (1085)
. ++.+ .+.+.++|++.|..+.
T Consensus 118 ~-~~~~---~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 118 A-WTVA---ERLGLPRMVVVTKLDK 138 (665)
T ss_dssp H-HHHH---HHTTCCEEEEEECGGG
T ss_pred H-HHHH---HHccCCEEEEecCCch
Confidence 3 3333 3358889999997653
No 333
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.56 E-value=0.00013 Score=81.50 Aligned_cols=38 Identities=29% Similarity=0.378 Sum_probs=32.8
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+++.+-++||+++.|.|+||+|||||+.-++...
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45677777889999999999999999999998888543
No 334
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.53 E-value=1.9e-05 Score=84.08 Aligned_cols=42 Identities=21% Similarity=0.065 Sum_probs=35.2
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
-++..++|++++|.|++|||||||+++|+|. .|+|.+.+.+.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 3445689999999999999999999999986 47788877653
No 335
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.53 E-value=9.6e-06 Score=87.76 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=45.2
Q ss_pred eCCeEEEEEccCCCChhHHHhhhh---CCCCCCeeeeEEE--------EcCccCCh----hcccceEEEEccCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLA---GRKTGGIIEGDIY--------ISGYPKRQ----ETFARISGYCEQND 911 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~---g~~~~~~~~G~i~--------i~g~~~~~----~~~~~~~gy~~Q~~ 911 (1085)
++|++++|+|+|||||||++++|+ |... +.+|.++ .+|.+... ..+++.+++++|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~--~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL--LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE--EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc--CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 689999999999999999999999 8655 5678888 78876532 23556678888753
No 336
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.52 E-value=1.3e-05 Score=89.54 Aligned_cols=77 Identities=18% Similarity=0.180 Sum_probs=52.3
Q ss_pred eeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCCh-------hcc-----cceEEEE-ccCC
Q 001400 845 LVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQ-------ETF-----ARISGYC-EQND 911 (1085)
Q Consensus 845 L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~-------~~~-----~~~~gy~-~Q~~ 911 (1085)
+++++|.+++|++++|+|+||+||||++..|++... ...|+|.+.+.+... ..+ +..++++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~--~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA--ELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH--HTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH--HCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 358888999999999999999999999999998543 224778887766532 112 3457778 5654
Q ss_pred CCCCCCCHHHHH
Q 001400 912 IHSPGLTVLESL 923 (1085)
Q Consensus 912 ~~~~~~tv~e~l 923 (1085)
...|..++.+++
T Consensus 173 ~~~p~~~~~~~l 184 (320)
T 1zu4_A 173 NADPASVVFDAI 184 (320)
T ss_dssp TCCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 333333334443
No 337
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.51 E-value=3.5e-05 Score=78.63 Aligned_cols=32 Identities=34% Similarity=0.519 Sum_probs=29.3
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++++.+.+| +++|+|+||||||||+++|.+.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHH
Confidence 4788999999 9999999999999999999874
No 338
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.49 E-value=3.8e-05 Score=79.77 Aligned_cols=38 Identities=32% Similarity=0.132 Sum_probs=23.9
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
....++||||++++|++++|+|++||||||+.+.|++.
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~ 48 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARK 48 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999999999999999964
No 339
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.47 E-value=3.4e-05 Score=85.97 Aligned_cols=57 Identities=12% Similarity=0.097 Sum_probs=43.1
Q ss_pred eecccceeeEeCCe------EEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCC
Q 001400 149 TILDDLSGIIRPSR------LTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVA 222 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~------~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~ 222 (1085)
..|++++..+..++ +++|+||||||||||+++|++.+... ...| .++++++++.+.+
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~-~~~~----------------~v~~i~~D~f~~~ 136 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRW-PDHP----------------NVEVITTDGFLYS 136 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTS-TTCC----------------CEEEEEGGGGBCC
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhccc-CCCC----------------eEEEEeecccccc
Confidence 46777777776665 99999999999999999999998631 0122 4677888876554
No 340
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.46 E-value=2e-05 Score=82.20 Aligned_cols=71 Identities=7% Similarity=0.020 Sum_probs=42.2
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEecCccHH-HHHhcCEEEEEec
Q 001400 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIHQPSID-IFESFDELLFMKR 1044 (1085)
Q Consensus 970 S~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~-~~~~~d~il~l~~ 1044 (1085)
+.|+.+|..++..+..+|..+..+ ++.++|.....+.+.++.. .+.+||+.+|.+... ....||.++++.-
T Consensus 61 ~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 61 EQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp -----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred cCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 578888888888888877643222 3455666666665555432 356888888875321 2456899888853
No 341
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.45 E-value=0.00057 Score=78.22 Aligned_cols=44 Identities=9% Similarity=0.025 Sum_probs=35.8
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH---CCceEEEEecCcc
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN---TGRTIVCTIHQPS 1029 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~---~g~tvi~~~H~~~ 1029 (1085)
.+|.+|++||+... |......+.+.+.+... .+.++|+++|+++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888876655 5788999999874
No 342
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.43 E-value=6e-05 Score=76.31 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=29.7
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
.+|++++|+|||||||||++++|++.+ |.+.+++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~-------g~~~i~~d 40 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL-------HAAFLDGD 40 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH-------TCEEEEGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh-------CcEEEeCc
Confidence 468999999999999999999999875 55666653
No 343
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.41 E-value=6.7e-05 Score=78.52 Aligned_cols=29 Identities=28% Similarity=0.276 Sum_probs=27.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++|++++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 58999999999999999999999998765
No 344
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.40 E-value=4.5e-05 Score=79.34 Aligned_cols=40 Identities=23% Similarity=0.094 Sum_probs=33.2
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
.++|++++|+|+||||||||+++|++.+.+. .|.|.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~---~~~v~~~~~ 58 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQ---GISVCVFHM 58 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHT---TCCEEEEEG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhc---CCeEEEecc
Confidence 5689999999999999999999999988653 566665543
No 345
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.40 E-value=0.00021 Score=81.38 Aligned_cols=57 Identities=11% Similarity=0.187 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC-ceEEEEec
Q 001400 969 LSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTG-RTIVCTIH 1026 (1085)
Q Consensus 969 LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g-~tvi~~~H 1026 (1085)
.+..++++..+++..+.+|+++++.-..+..|... ....++++.+...| .+|+++++
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 46788899999999999999777774334445443 34566666665445 57777776
No 346
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.40 E-value=5e-05 Score=80.83 Aligned_cols=39 Identities=23% Similarity=0.267 Sum_probs=33.1
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
..++|++++|+|+||||||||+++|+|. .|+|.+.+.|.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~------~g~v~~~~~~~ 54 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY------KNDICLLTEPV 54 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG------TTTEEEECCTH
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc------cCCeEEEecCH
Confidence 3478999999999999999999999986 36688887763
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.38 E-value=9.2e-05 Score=77.21 Aligned_cols=45 Identities=29% Similarity=0.252 Sum_probs=37.3
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccCCCCCCCceEEEEccCCCCCCC
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGFKEFVPPRTSAYVSQQDWQVAE 223 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~~~~~~~~~~~yv~Q~d~~~~~ 223 (1085)
-.+++|++++|+|+|||||||+++.|++.++ .+.+++|++.+++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 4578899999999999999999999998652 26788888876543
No 348
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=97.38 E-value=4.6e-05 Score=78.22 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKT 880 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~ 880 (1085)
|++++|+||||||||||+++|+|...
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999653
No 349
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.36 E-value=8.7e-05 Score=82.41 Aligned_cols=64 Identities=8% Similarity=0.080 Sum_probs=44.0
Q ss_pred CCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCHHH-HHHHHHHHHHHHHC-Cc--eEEEEecCccHHHHHhcCEEE
Q 001400 969 LSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDARA-AAIVMRTVRNIVNT-GR--TIVCTIHQPSIDIFESFDELL 1040 (1085)
Q Consensus 969 LS~Gqrqrl~iA~aL~--~~p~illlDEPtsgLD~~~-~~~i~~~l~~~~~~-g~--tvi~~~H~~~~~~~~~~d~il 1040 (1085)
+|.|++ .+++.+. ..|.|+++ +.+|... ...+.+.+.++.+. |. .+.+++|+-. .+.+.+|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGL-NVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHHH
Confidence 888886 4566666 67999998 8999876 66777888887653 43 5666677644 3555555543
No 350
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.35 E-value=0.0008 Score=76.05 Aligned_cols=28 Identities=29% Similarity=0.331 Sum_probs=25.6
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|+++.|.|++|+|||||+..++.
T Consensus 117 GGl~~G~i~~I~G~~GsGKTtla~~la~ 144 (343)
T 1v5w_A 117 GGIESMAITEAFGEFRTGKTQLSHTLCV 144 (343)
T ss_dssp SSBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999998886
No 351
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.33 E-value=8.5e-05 Score=76.71 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=26.4
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..+|++++|+||||||||||++.|++.++
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999999865
No 352
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.32 E-value=7.1e-05 Score=76.36 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=28.5
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEc
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYIS 891 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~ 891 (1085)
+|++++|+||||||||||++.|++.... ...|.|...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~-~~~~~i~~t 40 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPD-RFAYPIPHT 40 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTT-TEECCCCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCc-cEEEeeecc
Confidence 6899999999999999999999985431 134555443
No 353
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.32 E-value=6.7e-05 Score=78.18 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=37.5
Q ss_pred CchhhhhHHHHHHHHhCCCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHH--HhhcCeEEEec
Q 001400 307 ISGGQKKRLTTGELLVGPARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEA--YELFDDVILLS 382 (1085)
Q Consensus 307 LSGGqkqRvsia~al~~~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~--~~~~D~ii~L~ 382 (1085)
.+.|+.+|..+++.++.+|+.+.++ .+.+++.....+.+.++.. .++.+|+ -.+...+. ...||.+++|+
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~-~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLF-VVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEE-ECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEE-EechhhhcCcHhhCCEEEEEE
Confidence 3678999999999998888654433 2345555555555444321 2344443 33444443 56788888774
No 354
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.29 E-value=0.0019 Score=71.08 Aligned_cols=27 Identities=44% Similarity=0.669 Sum_probs=24.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++.-++|.||||+|||||++++++.+
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 467789999999999999999999865
No 355
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.27 E-value=0.00035 Score=79.59 Aligned_cols=34 Identities=26% Similarity=0.410 Sum_probs=27.5
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
..+|+++++.++ .++|+|++|||||||+++|.|.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence 458999999998 9999999999999999999994
No 356
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.25 E-value=2.7e-05 Score=80.94 Aligned_cols=47 Identities=23% Similarity=0.248 Sum_probs=36.6
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEE--EEcCccC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDI--YISGYPK 895 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i--~i~g~~~ 895 (1085)
+.+++..++|++++|+|+||||||||++.|++... ..|.+ +++|.+.
T Consensus 16 ~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~---~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 16 DRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY---QKGKLCYILDGDNV 64 (200)
T ss_dssp HHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH---HTTCCEEEEEHHHH
T ss_pred HHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCceEEEecCchh
Confidence 34555668899999999999999999999998542 23555 7887543
No 357
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.22 E-value=7.7e-05 Score=91.91 Aligned_cols=46 Identities=30% Similarity=0.292 Sum_probs=34.0
Q ss_pred eeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCccC
Q 001400 155 SGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHGF 202 (1085)
Q Consensus 155 s~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~~ 202 (1085)
|+.+++|+.++|+|++|+|||||++.|++..... ...|+| .+|...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~ 48 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK-ERRGRV-EEGTTT 48 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC-Ccccee-cCCccc
Confidence 3457889999999999999999999999876541 236777 555443
No 358
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.21 E-value=0.00085 Score=75.21 Aligned_cols=55 Identities=16% Similarity=0.151 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHh---cCCCEEEEeCCCCCCCH--------HH----HHHHHHHHHHHHH-CCceEEEEecC
Q 001400 973 QRKRLTIAVELV---ANPSIVFMDEPTSGLDA--------RA----AAIVMRTVRNIVN-TGRTIVCTIHQ 1027 (1085)
Q Consensus 973 qrqrl~iA~aL~---~~p~illlDEPtsgLD~--------~~----~~~i~~~l~~~~~-~g~tvi~~~H~ 1027 (1085)
+.+.+..+++++ .+|+++++|+.++-.+. .. ...+++.|+++++ .+.+||++.|-
T Consensus 187 ~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 187 QIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 446777788887 57999999999986542 11 2344555555554 48999999884
No 359
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.21 E-value=0.00049 Score=78.27 Aligned_cols=56 Identities=9% Similarity=0.123 Sum_probs=41.7
Q ss_pred cCchhhhhHHHHHHHHhCCCcEeEEe-CCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEE
Q 001400 306 GISGGQKKRLTTGELLVGPARVLFMD-EISNGLDSSTTYQIIKYLKHSTRALDGTTVISL 364 (1085)
Q Consensus 306 ~LSGGqkqRvsia~al~~~p~vlllD-EptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~ 364 (1085)
.+|+|++|++. +.+...++-++++| ++.+++|......+++.+..... +..+++..
T Consensus 231 ~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~ 287 (357)
T 2e87_A 231 ERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVI 287 (357)
T ss_dssp TSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEE
T ss_pred hhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEE
Confidence 58999988876 55556778889999 99999999988888877776532 34444433
No 360
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.20 E-value=0.0019 Score=72.40 Aligned_cols=36 Identities=36% Similarity=0.409 Sum_probs=30.3
Q ss_pred ecccce-eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
-|+.+- +-+++|+++.|.||||||||||+..++...
T Consensus 95 ~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 95 ALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred hHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 455543 679999999999999999999999998753
No 361
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.20 E-value=0.0014 Score=72.13 Aligned_cols=71 Identities=21% Similarity=0.296 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH----------HHHHHHHHHHHHHH----CCceEEEEecCcc---HHH
Q 001400 970 STEQRKRLTIAVELVANPSIVFMDEPTSGLDAR----------AAAIVMRTVRNIVN----TGRTIVCTIHQPS---IDI 1032 (1085)
Q Consensus 970 S~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~----------~~~~i~~~l~~~~~----~g~tvi~~~H~~~---~~~ 1032 (1085)
+++++.+..++.+...+|.+|++||+.+-++.. ....+...+..... .+..||++|+++. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777888888899999999998776532 22233344433211 2356788888753 223
Q ss_pred HHhcCEEE
Q 001400 1033 FESFDELL 1040 (1085)
Q Consensus 1033 ~~~~d~il 1040 (1085)
...|++.+
T Consensus 177 ~~R~~~~i 184 (297)
T 3b9p_A 177 LRRFTKRV 184 (297)
T ss_dssp HHHCCEEE
T ss_pred HhhCCeEE
Confidence 34455443
No 362
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.19 E-value=0.00016 Score=72.83 Aligned_cols=27 Identities=37% Similarity=0.530 Sum_probs=24.7
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.|++++|+|||||||||++++|++.++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999874
No 363
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.18 E-value=0.0015 Score=73.77 Aligned_cols=35 Identities=31% Similarity=0.307 Sum_probs=29.9
Q ss_pred ecccce-eeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 150 ILDDLS-GIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 150 iL~~vs-~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
-|+.+- +-+++|+++.|.||||||||||+..++..
T Consensus 110 ~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 110 EFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred hHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 345443 57999999999999999999999999875
No 364
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.17 E-value=0.0001 Score=88.14 Aligned_cols=42 Identities=33% Similarity=0.372 Sum_probs=35.7
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee-EEE-ECCcc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG-KIT-YNGHG 201 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G-~i~-~~G~~ 201 (1085)
.+++|++++|+|+||||||||+++|+|++.+. +| +|. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~---~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEM---GGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTT---CSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhccc---CCceEEEECCcH
Confidence 57899999999999999999999999999764 54 674 77643
No 365
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.12 E-value=0.00034 Score=78.12 Aligned_cols=130 Identities=13% Similarity=0.136 Sum_probs=74.0
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCCCCCCCHHHHH
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIHSPGLTVLESL 923 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~~~~~tv~e~l 923 (1085)
-|+++.+-+++|+++.|.|++|+|||||+..++.... ..| ..+.|+.- .++..+-.
T Consensus 57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a---~~g---------------~~vl~~sl------E~s~~~l~ 112 (315)
T 3bh0_A 57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS---DND---------------DVVNLHSL------EMGKKENI 112 (315)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH---TTT---------------CEEEEEES------SSCHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---HcC---------------CeEEEEEC------CCCHHHHH
Confidence 3455556689999999999999999999888874211 001 11233321 12332221
Q ss_pred HHhhhhcCCCcccHHHHHHHHHHHHHHcCCCcccccccCCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Q 001400 924 LFSAWLRLPSEIELETQRAFVEEVMELVELTSLSGALIGLPGINGLSTEQRKRLTIAVELVANPSIVFMDEPTSGLDARA 1003 (1085)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS~Gqrqrl~iA~aL~~~p~illlDEPtsgLD~~~ 1003 (1085)
. ++......+++..+.+.. ..||.++++|+..|...+.++++++.|+|...+
T Consensus 113 ~------------------R~~~~~~~i~~~~l~~~~------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~~---- 164 (315)
T 3bh0_A 113 K------------------RLIVTAGSINAQKIKAAR------RDFASEDWGKLSMAIGEISNSNINIFDKAGQSV---- 164 (315)
T ss_dssp H------------------HHHHHHTTCCHHHHHSCH------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCBH----
T ss_pred H------------------HHHHHHcCCCHHHHhcCC------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCCH----
Confidence 1 000000001111111100 027888899999988888888888888886443
Q ss_pred HHHHHHHHHHHHHC-Cce--EEEEec
Q 001400 1004 AAIVMRTVRNIVNT-GRT--IVCTIH 1026 (1085)
Q Consensus 1004 ~~~i~~~l~~~~~~-g~t--vi~~~H 1026 (1085)
..+...++++.++ |.. +|++-|
T Consensus 165 -~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 -NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp -HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred -HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2355555665443 666 777755
No 366
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.11 E-value=0.003 Score=72.11 Aligned_cols=28 Identities=32% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCe--EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSR--LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~--~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++. .++|.||+|+|||||++.+++.+.+
T Consensus 41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence 445 8999999999999999999998765
No 367
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.09 E-value=0.00028 Score=82.64 Aligned_cols=68 Identities=12% Similarity=0.187 Sum_probs=40.4
Q ss_pred CCCcEeEEeCCCCCCCH-HHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCeEEE-ecCCeEEEecC
Q 001400 323 GPARVLFMDEISNGLDS-STTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDDVIL-LSEGQIVYQGP 391 (1085)
Q Consensus 323 ~~p~vlllDEptsgLD~-~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ii~-L~~G~iv~~G~ 391 (1085)
.++++||+||+..-.+. .+...++..+..+.. .+..+|++.+.+..++..+.+++.- +..|.++..++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~ 262 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEP 262 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCC
Confidence 38899999999887764 667778888877653 3456666554444433222222222 34455544443
No 368
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.06 E-value=0.00019 Score=75.00 Aligned_cols=28 Identities=32% Similarity=0.472 Sum_probs=25.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKT 880 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~ 880 (1085)
++|++++|+||||||||||++.|++...
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 5799999999999999999999998654
No 369
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.06 E-value=0.0003 Score=69.43 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.8
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.++.+.+| +++|+|||||||||+|.+|.-.+
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 344556555 99999999999999999998544
No 370
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.05 E-value=6.7e-05 Score=85.58 Aligned_cols=142 Identities=13% Similarity=0.076 Sum_probs=77.7
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccCChhcccceEEEEccCCCC-CCCCCHHH
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPKRQETFARISGYCEQNDIH-SPGLTVLE 921 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~~~~~~~~~~gy~~Q~~~~-~~~~tv~e 921 (1085)
.+|+++++.+++|++++|+||||||||||+++|+|.. .|.+.....+. ..+...+|+++|...+ +...+...
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~-----~g~~~~~~~~~--~~~~~~lg~~~q~~~~l~dd~~~~~ 229 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC-----GGKALNVNLPL--DRLNFELGVAIDQFLVVFEDVKGTG 229 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH-----CCEEECCSSCT--TTHHHHHGGGTTCSCEEETTCCCST
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc-----CCcEEEEeccc--hhHHHHHHHhcchhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999843 35554412111 1111124556665432 12222111
Q ss_pred HHHHhhhhc-CCCcccHHHHHHHHHHHHHH---cCCCc-cc---ccccC----CCCCCCCCHHHHHHHHHHHHHhcCCCE
Q 001400 922 SLLFSAWLR-LPSEIELETQRAFVEEVMEL---VELTS-LS---GALIG----LPGINGLSTEQRKRLTIAVELVANPSI 989 (1085)
Q Consensus 922 ~l~~~~~~~-~~~~~~~~~~~~~~~~~l~~---~~l~~-~~---~~~~~----~~~~~~LS~Gqrqrl~iA~aL~~~p~i 989 (1085)
++ .+ .... ........+...++- +.+.. .. +.+.. ......+++|.++|+..+++++.+|++
T Consensus 230 ~~-----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDL 303 (377)
T 1svm_A 230 GE-----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL 303 (377)
T ss_dssp TT-----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHH
T ss_pred HH-----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCe
Confidence 10 01 0000 000001112223320 00110 00 11000 001245889999999998888899998
Q ss_pred EE-EeCCCC
Q 001400 990 VF-MDEPTS 997 (1085)
Q Consensus 990 ll-lDEPts 997 (1085)
++ ||+|+.
T Consensus 304 liyLd~~~~ 312 (377)
T 1svm_A 304 KHCLERSEF 312 (377)
T ss_dssp HHHHHTCTH
T ss_pred EEEEeCCHH
Confidence 76 999987
No 371
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.98 E-value=0.0003 Score=69.41 Aligned_cols=28 Identities=29% Similarity=0.717 Sum_probs=23.0
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
.++.+.+| +++|+|||||||||++++|.
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455554 89999999999999999986
No 372
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.94 E-value=0.00015 Score=81.96 Aligned_cols=47 Identities=23% Similarity=0.230 Sum_probs=39.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
..+++++++.+++|.+++|+|+||||||||++.|+|.+.+. .|+|.+
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~---~~~v~v 89 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE---GLKVAV 89 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHT---TCCEEE
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhc---CCeEEE
Confidence 35788888889999999999999999999999999987543 455544
No 373
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.89 E-value=0.0044 Score=68.56 Aligned_cols=28 Identities=43% Similarity=0.520 Sum_probs=24.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
|...++|.||||+||||+.++|++.+..
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 4568999999999999999999998754
No 374
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.88 E-value=0.00049 Score=73.08 Aligned_cols=37 Identities=30% Similarity=0.277 Sum_probs=27.4
Q ss_pred ecccceeeEe---CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 150 ILDDLSGIIR---PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 150 iL~~vs~~i~---~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
=|.++++.+. +|.+++|.||+||||||+++.|+..+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4677777776 999999999999999999999999885
No 375
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.88 E-value=0.00065 Score=79.48 Aligned_cols=71 Identities=15% Similarity=0.215 Sum_probs=47.9
Q ss_pred cCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHHCCceEEEEecCccHHHHHhcCEEEE-EecCcEEEEecCCCC
Q 001400 985 ANPSIVFMDEPTSGLDA-RAAAIVMRTVRNIVNTGRTIVCTIHQPSIDIFESFDELLF-MKRGGELIYAGPLGS 1056 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~-~~~~~i~~~l~~~~~~g~tvi~~~H~~~~~~~~~~d~il~-l~~gG~~~~~g~~~~ 1056 (1085)
.+|++||+||+..-.+. .++..+...+..+.+.|+.||+++|++..++....+++.- +. .|.++...++..
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~-~g~~i~l~~p~~ 265 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQ-MGLVAKLEPPDE 265 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHH-SSBCCBCCCCCH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhcc-CCeEEEeCCCCH
Confidence 38999999999887664 6778888999888778899999999854221111122211 22 356666666653
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.86 E-value=0.00019 Score=74.58 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=31.1
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
.++|++++|+|+||||||||++.|++... ...|.+.+.+.+
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~--~~~~~v~~~~~d 59 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLR--EQGISVCVFHMD 59 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHH--HTTCCEEEEEGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHh--hcCCeEEEeccC
Confidence 36799999999999999999999998542 123566655443
No 377
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.84 E-value=0.0002 Score=75.71 Aligned_cols=37 Identities=38% Similarity=0.444 Sum_probs=29.8
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEE
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITY 197 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~ 197 (1085)
+.+++|+|||||||||+.+.|++.++-....+|++..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 4689999999999999999999987532234677765
No 378
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.83 E-value=0.00038 Score=71.78 Aligned_cols=27 Identities=22% Similarity=0.459 Sum_probs=24.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+|++++|+||||||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 479999999999999999999999753
No 379
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.002 Score=74.44 Aligned_cols=28 Identities=32% Similarity=0.229 Sum_probs=25.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
++.+++++||+||||||++..|++.+.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998854
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.82 E-value=0.00041 Score=78.58 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=32.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
+++..++|+|+||||||||++.|+|.+.+. .|+|.+.+.+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~---~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTER---GHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHT---TCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhc---CCeEEEEeec
Confidence 467899999999999999999999987654 5666665543
No 381
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.79 E-value=0.00032 Score=80.12 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.0
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++..+.|.||+|+|||||++.+++.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~ 68 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSK 68 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999874
No 382
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.77 E-value=0.0005 Score=69.39 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=30.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
.+|++++|+|+|||||||+.+.|++.. |.+.+++.+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~------g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL------HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH------TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh------CcEEEeCccc
Confidence 468999999999999999999998742 5667776543
No 383
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.76 E-value=0.00042 Score=83.35 Aligned_cols=47 Identities=30% Similarity=0.496 Sum_probs=39.2
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECC
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1085)
.+++++++.+ +|+.++|+||||+|||||+++|++.+.+. .|.|.++|
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~---~~~i~~~~ 143 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRK---FVRISLGG 143 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCE---EEEECCCC
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCC---eEEEEecc
Confidence 4667777777 89999999999999999999999998653 67776555
No 384
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.73 E-value=0.0022 Score=74.21 Aligned_cols=25 Identities=44% Similarity=0.446 Sum_probs=22.9
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++.+++++|++|+||||++..|++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~ 120 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYF 120 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999974
No 385
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.73 E-value=6.4e-05 Score=83.74 Aligned_cols=38 Identities=26% Similarity=0.229 Sum_probs=29.8
Q ss_pred eEEeeeeeEEEeCCe------EEEEEccCCCChhHHHhhhhCCC
Q 001400 842 LQLLVNVTGAFRPGV------LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge------~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+.|++++..+..++ ++||+|+||||||||+++|.+..
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555666665555 99999999999999999999854
No 386
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.72 E-value=0.001 Score=83.81 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=26.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+++|+.+.|+||||+|||||+++|++..
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l 262 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANET 262 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHc
Confidence 46789999999999999999999999864
No 387
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.67 E-value=0.0005 Score=71.89 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=33.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceee--EEEECCc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSG--KITYNGH 200 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G--~i~~~G~ 200 (1085)
.+++|.+++|+|++||||||+.+.|++.+++. .| .+.++|.
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~---~g~~~~~~~~d 63 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRD---RRVHAYRLDGD 63 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHH---HCCCEEEECHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccc---cCCcEEEECCh
Confidence 35689999999999999999999999988632 56 6666653
No 388
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.63 E-value=0.00057 Score=68.70 Aligned_cols=26 Identities=38% Similarity=0.340 Sum_probs=23.3
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.|++++|+|+||||||||.++|++..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999999854
No 389
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.60 E-value=0.0011 Score=67.31 Aligned_cols=28 Identities=32% Similarity=0.291 Sum_probs=25.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|++++|+|++||||||+++.|++.+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999999999874
No 390
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.60 E-value=0.00032 Score=83.91 Aligned_cols=42 Identities=36% Similarity=0.481 Sum_probs=33.4
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee-EEE-EcCcc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG-DIY-ISGYP 894 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G-~i~-i~g~~ 894 (1085)
.+++|++++|+|+||||||||+++|+|.... ..| .+. ++|.+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~--~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLME--MGGRCVTLLDGDI 408 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHT--TCSSCEEEESSHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcc--cCCceEEEECCcH
Confidence 3578999999999999999999999996542 234 574 88854
No 391
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.59 E-value=0.00082 Score=69.91 Aligned_cols=29 Identities=28% Similarity=0.318 Sum_probs=26.3
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+++|.+++|+|++|||||||.+.|++..
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999999999854
No 392
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.52 E-value=0.0022 Score=64.44 Aligned_cols=27 Identities=37% Similarity=0.697 Sum_probs=23.3
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999853
No 393
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.51 E-value=0.0022 Score=70.94 Aligned_cols=28 Identities=29% Similarity=0.399 Sum_probs=24.8
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++++..+.|.||+|+|||||.++|++..
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 4678889999999999999999999743
No 394
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.50 E-value=0.002 Score=64.82 Aligned_cols=27 Identities=41% Similarity=0.607 Sum_probs=23.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++|..++|+|+||+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
No 395
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.49 E-value=0.0019 Score=75.57 Aligned_cols=71 Identities=17% Similarity=0.208 Sum_probs=39.5
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC---------CCceeeEEEECCccCC---CCCCCceEEEEccCCCCCCCCCHHHH
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH---------HLQVSGKITYNGHGFK---EFVPPRTSAYVSQQDWQVAEMTVRET 229 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~---------~~~~~G~i~~~G~~~~---~~~~~~~~~yv~Q~d~~~~~lTV~E~ 229 (1085)
-.++|+|+||+|||||++.|+|.... .....|.+.++|.++. ....++...+.+|....+..+++.++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 47999999999999999999997421 0134789999997542 22222333444444333444444555
Q ss_pred HHH
Q 001400 230 LDF 232 (1085)
Q Consensus 230 l~f 232 (1085)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 396
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.49 E-value=0.0011 Score=68.78 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=26.3
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46899999999999999999999998764
No 397
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.49 E-value=0.014 Score=61.86 Aligned_cols=42 Identities=7% Similarity=0.106 Sum_probs=29.5
Q ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH--CCceEEEEec
Q 001400 985 ANPSIVFMDEPTSGLDARAAAIVMRTVRNIVN--TGRTIVCTIH 1026 (1085)
Q Consensus 985 ~~p~illlDEPtsgLD~~~~~~i~~~l~~~~~--~g~tvi~~~H 1026 (1085)
.+|+++|+..+.+.++......+..+++.+.. ...++|+.+|
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 46899999999888888766666555544322 1258888898
No 398
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.47 E-value=0.0017 Score=65.69 Aligned_cols=40 Identities=30% Similarity=0.218 Sum_probs=30.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
.+++|+|++|||||||++.|.+.+......-|.|..++++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 5889999999999999999999865422234777776654
No 399
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.47 E-value=0.00085 Score=76.50 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=25.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++.++|.||+|+|||||++.+++.+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998774
No 400
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.46 E-value=0.0015 Score=67.96 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=25.5
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+.++.+.|| +++|+|||||||||++.+|.-.+
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 344555564 99999999999999999997544
No 401
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.43 E-value=0.0014 Score=66.75 Aligned_cols=32 Identities=25% Similarity=0.227 Sum_probs=26.6
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
++|+..++|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788889999999999999999999999976
No 402
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.39 E-value=0.00062 Score=76.18 Aligned_cols=37 Identities=30% Similarity=0.450 Sum_probs=32.9
Q ss_pred ecccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhC
Q 001400 150 ILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 150 iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++.++..+++|+. ++|+|++||||||+.++|++.+.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 67777777888888 99999999999999999999874
No 403
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=96.38 E-value=0.0032 Score=72.66 Aligned_cols=44 Identities=23% Similarity=0.040 Sum_probs=37.2
Q ss_pred ccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 152 DDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 152 ~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
+++++. +|++++++|++||||||++..|++.+.+. .|+|.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~---g~~Vllvd~ 134 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGK---GRRPLLVAA 134 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEEC
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEeec
Confidence 677887 89999999999999999999999998764 567766553
No 404
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.35 E-value=0.0015 Score=67.94 Aligned_cols=28 Identities=25% Similarity=0.599 Sum_probs=22.7
Q ss_pred eeEEEeCCeEEEEEccCCCChhHHHhhhh
Q 001400 848 VTGAFRPGVLTALVGVSGAGKTTLMDVLA 876 (1085)
Q Consensus 848 vs~~i~~Ge~~al~G~nGaGKSTLl~~l~ 876 (1085)
.++.+.+ .+++|+|||||||||++++|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3445555 489999999999999999875
No 405
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.31 E-value=0.0016 Score=66.42 Aligned_cols=30 Identities=40% Similarity=0.473 Sum_probs=26.9
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.++|.+++|+|++||||||+.+.|++.+..
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 357899999999999999999999998754
No 406
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.31 E-value=0.0013 Score=69.90 Aligned_cols=67 Identities=13% Similarity=0.113 Sum_probs=39.1
Q ss_pred chhhhhHHHHHHHHhCCCcEeEEeCCCC-CCCHHHHHHHHHHHHHHHhccCCEEEEEEecChhHHHhhcCe
Q 001400 308 SGGQKKRLTTGELLVGPARVLFMDEISN-GLDSSTTYQIIKYLKHSTRALDGTTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 308 SGGqkqRvsia~al~~~p~vlllDEpts-gLD~~~~~~i~~~l~~~~~~~~~t~ii~~~q~~~~~~~~~D~ 377 (1085)
+.|.-.+.. ...+.+.+++++||.-. ++|.......++.+...... -.+++++.+.+.+...++|++
T Consensus 162 Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~-~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 162 TVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPE-VRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp EHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTT-SEEEEEECSSCCHHHHHHTTS
T ss_pred CHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCC-CeEEEEecCCCHHHHHHHcCC
Confidence 334444442 23478899999999976 68877665555554443221 134555555665555555553
No 407
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.30 E-value=0.0024 Score=65.22 Aligned_cols=35 Identities=34% Similarity=0.390 Sum_probs=20.9
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.+++++++..++. .++|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 3788999988887 6699999999999999999974
No 408
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.023 Score=60.21 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.4
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++|+|++|+|||||++.|+|...
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999998643
No 409
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.26 E-value=0.003 Score=64.54 Aligned_cols=50 Identities=24% Similarity=0.315 Sum_probs=28.3
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC------CCCeeeeEEEEcCc
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISGY 893 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g~ 893 (1085)
.+++++++..++. .++++|++|+|||||++.+.+.. +.+...+.+.++|.
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 4678899888777 78999999999999999999732 22334566666653
No 410
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.26 E-value=0.015 Score=63.36 Aligned_cols=29 Identities=45% Similarity=0.673 Sum_probs=25.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.++.-++|.||||+|||||+++++..+.
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 45666799999999999999999998763
No 411
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.25 E-value=0.0016 Score=70.25 Aligned_cols=39 Identities=21% Similarity=0.221 Sum_probs=31.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCc
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGH 200 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~ 200 (1085)
..+++.+++|+|+|||||||+.+.|+..++. |.+.++|-
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~-----~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-----NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTT-----CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCC-----CcEEEecH
Confidence 4667899999999999999999999988742 34556653
No 412
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.25 E-value=0.0033 Score=69.30 Aligned_cols=44 Identities=23% Similarity=0.143 Sum_probs=35.7
Q ss_pred cc-ceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECC
Q 001400 152 DD-LSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNG 199 (1085)
Q Consensus 152 ~~-vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G 199 (1085)
++ +++..+ |++++++|++|+||||++..|++.+.+. .|+|.+.+
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~---g~~v~l~~ 133 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKK---GFKVGLVG 133 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHT---TCCEEEEE
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHC---CCeEEEEe
Confidence 45 777776 9999999999999999999999988643 45665544
No 413
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.0012 Score=70.37 Aligned_cols=25 Identities=24% Similarity=0.341 Sum_probs=21.5
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
..|+.+.++|+|||||||++..+..
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 4689999999999999998877653
No 414
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.24 E-value=0.023 Score=66.24 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=33.1
Q ss_pred ceeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 147 KLTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 147 ~~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
...-|+.+.+-++||+++.|.|+||+|||||+.-++...
T Consensus 183 G~~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 183 GFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCHHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcHHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 345677777789999999999999999999988887543
No 415
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.24 E-value=0.0029 Score=74.12 Aligned_cols=75 Identities=19% Similarity=0.261 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHh--cCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHHC-CceEEEEecC-------
Q 001400 968 GLSTEQRKRLTIAVELV--ANPSIVFMDEPTSGLDA----------RAAAIVMRTVRNIVNT-GRTIVCTIHQ------- 1027 (1085)
Q Consensus 968 ~LS~Gqrqrl~iA~aL~--~~p~illlDEPtsgLD~----------~~~~~i~~~l~~~~~~-g~tvi~~~H~------- 1027 (1085)
++|..+- .+.++.+. .+|+++++|..+.-.+. .....+.+.|+.++++ +.+||+++|-
T Consensus 292 ~~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r 369 (444)
T 2q6t_A 292 DLTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEAR 369 (444)
T ss_dssp TCBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSS
T ss_pred CCCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccC
Confidence 4677664 34566665 47999999998764332 1234677778887754 8999999982
Q ss_pred ----ccH-------HHHHhcCEEEEEec
Q 001400 1028 ----PSI-------DIFESFDELLFMKR 1044 (1085)
Q Consensus 1028 ----~~~-------~~~~~~d~il~l~~ 1044 (1085)
|.. .+...+|.++.|.+
T Consensus 370 ~~~~p~l~dlr~Sg~ie~~aD~vi~L~r 397 (444)
T 2q6t_A 370 PNKRPMLSDLRESGSIEQDADLVMFIYR 397 (444)
T ss_dssp SSCSCCGGGGGGGCTTGGGCSEEEEEEE
T ss_pred CCCCCChHHhcchhHHHHhCCEEEEEec
Confidence 211 13346899998864
No 416
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.24 E-value=0.05 Score=61.43 Aligned_cols=30 Identities=40% Similarity=0.541 Sum_probs=26.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+-+++|+++.|.||||+|||||...++...
T Consensus 58 GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 58 GGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999999999888654
No 417
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.19 E-value=0.0062 Score=67.99 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++..++|.||+|+|||||++++++.+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 356789999999999999999998764
No 418
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.16 E-value=0.0021 Score=68.21 Aligned_cols=35 Identities=26% Similarity=0.333 Sum_probs=25.5
Q ss_pred eeeeeEEEe---CCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 845 LVNVTGAFR---PGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 845 L~~vs~~i~---~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
|.++|+.+. +|.+++|.|++||||||+++.|+...
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 446666665 89999999999999999999999754
No 419
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.16 E-value=0.0003 Score=79.53 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=32.8
Q ss_pred eEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 842 LQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 842 ~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..+++++++.+.+|.+++|+|++|||||||++.|++.
T Consensus 43 ~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 43 TQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHH
T ss_pred HHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3466788888899999999999999999999999874
No 420
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.14 E-value=0.0012 Score=67.97 Aligned_cols=34 Identities=32% Similarity=0.433 Sum_probs=30.3
Q ss_pred eecccceeeEeCCeEEEEeCCCCCChhHHHHHHHh
Q 001400 149 TILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 149 ~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+++++|+..++++ ++|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 57888998888885 68999999999999999986
No 421
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.07 E-value=0.019 Score=67.21 Aligned_cols=38 Identities=32% Similarity=0.564 Sum_probs=33.4
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++...
T Consensus 187 ~~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 187 FKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CHHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CHhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45678888889999999999999999999999988654
No 422
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.04 E-value=0.0013 Score=74.35 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++.+++|+|++|||||||++.|+|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999984
No 423
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.03 E-value=0.0039 Score=67.07 Aligned_cols=45 Identities=36% Similarity=0.541 Sum_probs=30.3
Q ss_pred ecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhhCCCCceeeEEEECCcc
Q 001400 150 ILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRLGHHLQVSGKITYNGHG 201 (1085)
Q Consensus 150 iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~~~~~~G~i~~~G~~ 201 (1085)
.++++++.+++| ++|.||||+|||||+++|++.+... -+.+++.+
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~-----~~~i~~~~ 80 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP-----FFTISGSD 80 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC-----EEEECSCS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC-----EEEEeHHH
Confidence 456666666665 8999999999999999999987531 25556543
No 424
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.02 E-value=0.0032 Score=63.94 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+|.+++|+|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999999765
No 425
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.01 E-value=0.0023 Score=72.01 Aligned_cols=33 Identities=36% Similarity=0.590 Sum_probs=31.6
Q ss_pred cceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 153 DLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 153 ~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999875
No 426
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.00 E-value=0.003 Score=65.32 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+++|+|+|||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 427
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.99 E-value=0.019 Score=64.06 Aligned_cols=28 Identities=32% Similarity=0.508 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 850 GAFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 850 ~~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
+-+++|+++.|.|++|+|||||...++.
T Consensus 93 GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 93 GGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4578999999999999999999987774
No 428
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.98 E-value=0.013 Score=66.31 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=24.5
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhC
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
-+++|+++.|.|++|+|||||...++.
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~ 85 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIA 85 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999887774
No 429
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=95.97 E-value=0.0034 Score=71.61 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=26.3
Q ss_pred ceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 154 LSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 154 vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+-+.++.|..++|+|+||+|||||+++|+|.
T Consensus 15 l~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 15 IIGRFGTSLKIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp -CCCSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred HHhhccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4456778889999999999999999999985
No 430
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.95 E-value=0.0029 Score=64.06 Aligned_cols=39 Identities=33% Similarity=0.341 Sum_probs=29.1
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee--EEEEcCcc
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISGYP 894 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G--~i~i~g~~ 894 (1085)
++|++++|+|++||||||+.+.|++.... .| .+.+++..
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~---~g~~~i~~d~~~ 43 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC---HGIPCYTLDGDN 43 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH---TTCCEEEEEHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh---CCCcEEEECChH
Confidence 47999999999999999999999975321 23 45566543
No 431
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.92 E-value=0.0015 Score=73.53 Aligned_cols=32 Identities=25% Similarity=0.343 Sum_probs=30.2
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
|+++.+.+|+.++|+|++|+|||||++.|++.
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 78999999999999999999999999999873
No 432
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.92 E-value=0.0037 Score=62.41 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+..++
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998764
No 433
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.88 E-value=0.0059 Score=71.33 Aligned_cols=69 Identities=19% Similarity=0.306 Sum_probs=37.4
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCC----------CCeeeeEEEEcCccCCh---hcccceEEEEccCCCCCCCCCHHHH
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKT----------GGIIEGDIYISGYPKRQ---ETFARISGYCEQNDIHSPGLTVLES 922 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~----------~~~~~G~i~i~g~~~~~---~~~~~~~gy~~Q~~~~~~~~tv~e~ 922 (1085)
-.++|+|+||+|||||++.|+|... ..+..|.+.++|.+..- ...++..++.+|....+...+..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 3689999999999999999999632 11346888899874311 1122333344344333444444555
Q ss_pred HH
Q 001400 923 LL 924 (1085)
Q Consensus 923 l~ 924 (1085)
+.
T Consensus 261 i~ 262 (439)
T 1mky_A 261 IE 262 (439)
T ss_dssp HH
T ss_pred Hh
Confidence 54
No 434
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.87 E-value=0.0014 Score=78.64 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=38.1
Q ss_pred EEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCcc
Q 001400 843 QLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYP 894 (1085)
Q Consensus 843 ~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~ 894 (1085)
.+++++++.+ +|+.++|+||||+|||||+++|++... ...|.|.++|..
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~--~~~~~i~~~~~~ 145 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG--RKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT--CEEEEECCCC--
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC--CCeEEEEecccc
Confidence 3556777777 899999999999999999999998643 346777777643
No 435
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.87 E-value=0.0043 Score=62.44 Aligned_cols=26 Identities=31% Similarity=0.496 Sum_probs=23.7
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|.++.|.|+|||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999998764
No 436
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.85 E-value=0.043 Score=57.58 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=38.3
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEec
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~ 382 (1085)
+++++++||.-. |+.. +++.++.+++. +..+|++=+ .+++++..++|.|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~-gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAEN-GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHT-TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhC-CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999964 6643 45555666653 556666554 56788999999999986
No 437
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.83 E-value=0.003 Score=66.41 Aligned_cols=57 Identities=23% Similarity=0.160 Sum_probs=38.7
Q ss_pred CeEEEEEccCCCChhHHHhhhhCCCC-CCeeeeEEEE--------cCccCCh----hcccceEEEEccCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYI--------SGYPKRQ----ETFARISGYCEQND 911 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i--------~g~~~~~----~~~~~~~gy~~Q~~ 911 (1085)
+.+++|+|++||||||+.++|++... .-+..|++.. +|.++.. ...++.+|+++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 56899999999999999999997431 1144577766 5655431 12445567777753
No 438
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.82 E-value=0.008 Score=67.05 Aligned_cols=45 Identities=7% Similarity=0.117 Sum_probs=34.4
Q ss_pred hcCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHHCCceEEEEecCc
Q 001400 984 VANPSIVFMDEPTS-GLDARAAAIVMRTVRNIVNTGRTIVCTIHQP 1028 (1085)
Q Consensus 984 ~~~p~illlDEPts-gLD~~~~~~i~~~l~~~~~~g~tvi~~~H~~ 1028 (1085)
..+|.+||+||+.. .-+..++..+...+..+.+.|..+|++++.+
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~ 141 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 141 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 35799999999866 2344778888889888777777788877754
No 439
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.82 E-value=0.0037 Score=64.61 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=20.1
Q ss_pred EEEEeCCCCCChhHHHHHHHh
Q 001400 163 LTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G 183 (1085)
.++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 440
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.79 E-value=0.00083 Score=76.42 Aligned_cols=31 Identities=19% Similarity=0.294 Sum_probs=27.3
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
+.+++++++.| +|+|++|+|||||++.|.|.
T Consensus 30 k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 30 KSVKKGFEFTL------MVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp HHHHHCCEECE------EECCCTTSCHHHHHHHHTTC
T ss_pred eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCC
Confidence 35788888877 99999999999999999875
No 441
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.75 E-value=0.0019 Score=72.78 Aligned_cols=40 Identities=28% Similarity=0.541 Sum_probs=34.8
Q ss_pred eeecccceeeEeCCeE--EEEeCCCCCChhHHHHHHHhhhCC
Q 001400 148 LTILDDLSGIIRPSRL--TLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~--~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
..+++.++..++.|++ +++.||||+||||+++++++.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3477778888888988 999999999999999999998754
No 442
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.74 E-value=0.00053 Score=78.02 Aligned_cols=33 Identities=30% Similarity=0.350 Sum_probs=27.3
Q ss_pred CeEEeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 841 RLQLLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 841 ~~~~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
++.+++++++.| +|+|++|+|||||++.|.|..
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~ 61 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTD 61 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence 344667888877 999999999999999998753
No 443
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.72 E-value=0.0039 Score=63.45 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=25.9
Q ss_pred eeeEEEeCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 847 NVTGAFRPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 847 ~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57778888999999999999999999999853
No 444
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.70 E-value=0.012 Score=64.30 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.6
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++.-+.|.||+|+|||||.+.|+..
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH
Confidence 45667899999999999999999864
No 445
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.70 E-value=0.0051 Score=65.11 Aligned_cols=25 Identities=32% Similarity=0.518 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++|.||+||||||+.+.|+..++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999998763
No 446
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.70 E-value=0.0038 Score=64.73 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.6
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
..+|.+++|+|++|||||||.+.|+...
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3578999999999999999999998643
No 447
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=95.65 E-value=0.0057 Score=64.99 Aligned_cols=29 Identities=31% Similarity=0.379 Sum_probs=25.5
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-++|.+++|+|++||||||+.+.|++.++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45788999999999999999999998764
No 448
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.63 E-value=0.0041 Score=68.77 Aligned_cols=64 Identities=9% Similarity=0.021 Sum_probs=39.7
Q ss_pred CchhhhhHHHHHHHHh--CCCcEeEEeCCCCCCCHHH-HHHHHHHHHHHHhccCC-EEEEEEecChhHHHhhcCe
Q 001400 307 ISGGQKKRLTTGELLV--GPARVLFMDEISNGLDSST-TYQIIKYLKHSTRALDG-TTVISLLQPAPEAYELFDD 377 (1085)
Q Consensus 307 LSGGqkqRvsia~al~--~~p~vlllDEptsgLD~~~-~~~i~~~l~~~~~~~~~-t~ii~~~q~~~~~~~~~D~ 377 (1085)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+.+++...+. .++.+..+....+.+++|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~ 168 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAI 168 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHH
Confidence 888886 5667776 78999998 7888876 56677777777654332 2333233333344444443
No 449
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.61 E-value=0.0023 Score=65.97 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=34.4
Q ss_pred EeeeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCC------CCCeeeeEEEEcC
Q 001400 844 LLVNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRK------TGGIIEGDIYISG 892 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~------~~~~~~G~i~i~g 892 (1085)
+++++|+..+++ .++|+|++|+|||||++.+.+.. +.+...+.+.++|
T Consensus 15 ~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 15 VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 566777777766 57999999999999999998732 1123345666655
No 450
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.60 E-value=0.0058 Score=62.31 Aligned_cols=27 Identities=44% Similarity=0.613 Sum_probs=24.4
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998766
No 451
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.59 E-value=0.09 Score=59.42 Aligned_cols=27 Identities=37% Similarity=0.632 Sum_probs=23.9
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++..-++|.||+|+|||||.++|+..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456679999999999999999999875
No 452
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.48 E-value=0.007 Score=65.12 Aligned_cols=25 Identities=40% Similarity=0.684 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.+++|+||||||||||.+.|++.++
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC
Confidence 3789999999999999999998764
No 453
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.46 E-value=0.0049 Score=63.70 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHhhhhC
Q 001400 857 LTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g 877 (1085)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999997
No 454
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.45 E-value=0.0065 Score=60.34 Aligned_cols=23 Identities=39% Similarity=0.609 Sum_probs=20.9
Q ss_pred EEEEeCCCCCChhHHHHHHHhhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++|+|+||+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
No 455
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.44 E-value=0.0084 Score=65.77 Aligned_cols=27 Identities=37% Similarity=0.402 Sum_probs=24.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+.++.|.|||||||||+.+.|+..+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999998765
No 456
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.44 E-value=0.0066 Score=67.12 Aligned_cols=30 Identities=40% Similarity=0.576 Sum_probs=26.9
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++++.-++|.||||+|||||.++|++.+.
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 467888999999999999999999998763
No 457
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.43 E-value=0.0074 Score=61.34 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=23.6
Q ss_pred CeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 161 SRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 161 G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
|.+++|.|++||||||+.+.|+-.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999998764
No 458
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=95.42 E-value=0.012 Score=59.34 Aligned_cols=22 Identities=36% Similarity=0.659 Sum_probs=20.6
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 459
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.41 E-value=0.015 Score=61.00 Aligned_cols=52 Identities=15% Similarity=0.286 Sum_probs=40.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCceEEEEec---------CccHHHHHhcCEEEEE
Q 001400 986 NPSIVFMDEPTSGLDARAAAIVMRTVRNIVNTGRTIVCTIH---------QPSIDIFESFDELLFM 1042 (1085)
Q Consensus 986 ~p~illlDEPtsgLD~~~~~~i~~~l~~~~~~g~tvi~~~H---------~~~~~~~~~~d~il~l 1042 (1085)
+|+++++||.-. |+.. +.+.++.+++.|.+||++-| ..+..+...+|+|.-|
T Consensus 89 ~~dvViIDEaQ~-l~~~----~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDR----ICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHH----HHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999964 6643 45566777777999999999 4556788889998874
No 460
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.38 E-value=0.0081 Score=60.88 Aligned_cols=27 Identities=26% Similarity=0.162 Sum_probs=23.4
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++..++|+|++||||||+.+.|+..++
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 466899999999999999999998763
No 461
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=95.34 E-value=0.0034 Score=65.50 Aligned_cols=40 Identities=25% Similarity=0.238 Sum_probs=30.9
Q ss_pred EeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeee--EEEEcCc
Q 001400 852 FRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEG--DIYISGY 893 (1085)
Q Consensus 852 i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G--~i~i~g~ 893 (1085)
+++|.+++|+|++||||||+.+.|++... +..| .+.++|.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~--~~~g~~~~~~~~d 63 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV--RDRRVHAYRLDGD 63 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH--HHHCCCEEEECHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc--cccCCcEEEECCh
Confidence 46799999999999999999999997542 1235 6667653
No 462
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.31 E-value=0.0095 Score=61.62 Aligned_cols=28 Identities=21% Similarity=0.178 Sum_probs=25.1
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+|.+++|.|++||||||+.+.|+..++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5778999999999999999999988754
No 463
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=95.31 E-value=0.0074 Score=59.92 Aligned_cols=23 Identities=35% Similarity=0.642 Sum_probs=21.1
Q ss_pred EEEEEccCCCChhHHHhhhhCCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
+++|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 464
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.28 E-value=0.062 Score=60.74 Aligned_cols=25 Identities=32% Similarity=0.434 Sum_probs=21.8
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+..-+.|.||+|+|||||.+.|+..
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~ 140 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ 140 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH
Confidence 4556899999999999999999864
No 465
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.27 E-value=0.061 Score=60.77 Aligned_cols=28 Identities=39% Similarity=0.604 Sum_probs=24.3
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.++..-++|.||+|+|||||.++++..+
T Consensus 81 ~~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 81 RKPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 3556678999999999999999999876
No 466
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.25 E-value=0.0087 Score=60.19 Aligned_cols=24 Identities=42% Similarity=0.444 Sum_probs=21.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
.++|+|+|||||||+.+.|+..++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 488999999999999999998763
No 467
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.24 E-value=0.0092 Score=61.32 Aligned_cols=24 Identities=25% Similarity=0.511 Sum_probs=22.1
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998874
No 468
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.15 E-value=0.0098 Score=61.20 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999999765
No 469
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.14 E-value=0.0098 Score=60.07 Aligned_cols=27 Identities=41% Similarity=0.366 Sum_probs=23.8
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..+..++|.|++||||||+.+.|+-.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999765
No 470
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.10 E-value=0.024 Score=64.32 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCeEEEEEccCCCChhHHHhhhhCC
Q 001400 854 PGVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 854 ~Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
.+..+.|.||+|+|||||++.++..
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999864
No 471
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.10 E-value=0.01 Score=60.60 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.2
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
+++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 457799999999999999999999766
No 472
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.08 E-value=0.0096 Score=60.74 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.6
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+.+.|+||||||||||++.|....+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 3578999999999999999987654
No 473
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.05 E-value=0.012 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.249 Sum_probs=23.1
Q ss_pred eEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 162 RLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
.+++|+|++|||||||+..|+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 37899999999999999999988753
No 474
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.04 E-value=0.0055 Score=62.84 Aligned_cols=29 Identities=31% Similarity=0.600 Sum_probs=25.0
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++++.+++|.|++||||||+.+.|+..++
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34567899999999999999999997763
No 475
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.00 E-value=0.0091 Score=75.08 Aligned_cols=32 Identities=41% Similarity=0.610 Sum_probs=28.7
Q ss_pred eeEeCCeEEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 156 GIIRPSRLTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 156 ~~i~~G~~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+.+++|+.++|.||||||||||+++|+|.++.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 35789999999999999999999999998743
No 476
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.00 E-value=0.013 Score=61.42 Aligned_cols=28 Identities=36% Similarity=0.504 Sum_probs=24.1
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|..++|+|++||||||+.+.|+..+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4577899999999999999999997763
No 477
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.98 E-value=0.011 Score=59.74 Aligned_cols=38 Identities=37% Similarity=0.338 Sum_probs=27.7
Q ss_pred eEEEEEccCCCChhHHHhhhhCCCC-CCeeeeEEEEcCc
Q 001400 856 VLTALVGVSGAGKTTLMDVLAGRKT-GGIIEGDIYISGY 893 (1085)
Q Consensus 856 e~~al~G~nGaGKSTLl~~l~g~~~-~~~~~G~i~i~g~ 893 (1085)
.+++|+|++|||||||++.|.+... .+...|.|..++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 4789999999999999999987421 1223466666543
No 478
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.97 E-value=0.29 Score=57.94 Aligned_cols=38 Identities=13% Similarity=0.006 Sum_probs=32.0
Q ss_pred eeecccceeeEeCCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 148 LTILDDLSGIIRPSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 148 ~~iL~~vs~~i~~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
..-|+.+.+-+++|+++.|.|+||+|||||+.-++-..
T Consensus 229 ~~~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 229 CTGINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CTTHHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred hhhhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 45577776679999999999999999999988887544
No 479
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.96 E-value=0.0089 Score=68.16 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=32.0
Q ss_pred EEeCCeEEEEEccCCCChhHHHhhhhCCCC---------CCeeeeEEEEcCc
Q 001400 851 AFRPGVLTALVGVSGAGKTTLMDVLAGRKT---------GGIIEGDIYISGY 893 (1085)
Q Consensus 851 ~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~---------~~~~~G~i~i~g~ 893 (1085)
.++.|..++|+|++|+|||||++.|+|... -.+..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 456788999999999999999999998521 1244677776653
No 480
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.92 E-value=0.012 Score=58.69 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=18.3
Q ss_pred EEEEeCCCCCChhHHHHHH
Q 001400 163 LTLLLGPPSSGKTTLLLAL 181 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L 181 (1085)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 7899999999999999999
No 481
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.91 E-value=0.012 Score=59.41 Aligned_cols=22 Identities=41% Similarity=0.682 Sum_probs=20.5
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 482
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.89 E-value=0.013 Score=60.75 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=25.0
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|.+++|.|++||||||+.+.|+-.++
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997653
No 483
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.88 E-value=0.01 Score=60.04 Aligned_cols=22 Identities=41% Similarity=0.537 Sum_probs=20.3
Q ss_pred EEEEeCCCCCChhHHHHHHHhh
Q 001400 163 LTLLLGPPSSGKTTLLLALAGR 184 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~ 184 (1085)
.++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999875
No 484
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.88 E-value=0.013 Score=58.79 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEeCCCCCChhHHHHHHHh
Q 001400 162 RLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 162 ~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+++|.|+|||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 485
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=94.86 E-value=0.0024 Score=71.44 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=30.2
Q ss_pred EeeeeeEEEeCCeE--EEEEccCCCChhHHHhhhhCC
Q 001400 844 LLVNVTGAFRPGVL--TALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 844 ~L~~vs~~i~~Ge~--~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++.+++.+++|+. ++|+|++||||||+.++|++.
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 45677777888888 999999999999999999873
No 486
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.84 E-value=0.012 Score=59.69 Aligned_cols=27 Identities=37% Similarity=0.560 Sum_probs=24.4
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhCCC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAGRK 879 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g~~ 879 (1085)
.+|.++.|+|++||||||+.+.|++..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 578999999999999999999998743
No 487
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.83 E-value=0.016 Score=59.04 Aligned_cols=26 Identities=23% Similarity=0.416 Sum_probs=22.6
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRL 185 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l 185 (1085)
++.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998765
No 488
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.81 E-value=0.043 Score=73.12 Aligned_cols=30 Identities=37% Similarity=0.456 Sum_probs=27.5
Q ss_pred eEeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 157 IIRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 157 ~i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
-+++|+++.|.||||+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 599999999999999999999999987653
No 489
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.79 E-value=0.012 Score=59.26 Aligned_cols=27 Identities=33% Similarity=0.362 Sum_probs=19.3
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++.++.|.|++||||||+.+.|+..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 467899999999999999999987653
No 490
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.76 E-value=0.0091 Score=61.59 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHhhhhCC
Q 001400 855 GVLTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 855 Ge~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
..+++|+|++||||||+.+.|++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999864
No 491
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.75 E-value=0.012 Score=59.59 Aligned_cols=25 Identities=36% Similarity=0.425 Sum_probs=22.2
Q ss_pred eCCeEEEEEccCCCChhHHHhhhhC
Q 001400 853 RPGVLTALVGVSGAGKTTLMDVLAG 877 (1085)
Q Consensus 853 ~~Ge~~al~G~nGaGKSTLl~~l~g 877 (1085)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3578999999999999999999984
No 492
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.74 E-value=0.013 Score=59.22 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHhhhhCC
Q 001400 857 LTALVGVSGAGKTTLMDVLAGR 878 (1085)
Q Consensus 857 ~~al~G~nGaGKSTLl~~l~g~ 878 (1085)
+++|+|++|+|||||++.++|.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999984
No 493
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.74 E-value=0.016 Score=60.53 Aligned_cols=24 Identities=33% Similarity=0.325 Sum_probs=21.8
Q ss_pred CCeEEEEeCCCCCChhHHHHHHHh
Q 001400 160 PSRLTLLLGPPSSGKTTLLLALAG 183 (1085)
Q Consensus 160 ~G~~~~llGp~GsGKSTLL~~L~G 183 (1085)
.+.+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999986
No 494
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.71 E-value=0.015 Score=60.37 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.1
Q ss_pred eCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 159 RPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 159 ~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++|.+++|.|++||||||+.+.|+-.++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999999997763
No 495
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.69 E-value=0.0061 Score=70.33 Aligned_cols=46 Identities=26% Similarity=0.109 Sum_probs=35.6
Q ss_pred eeeeEEEeCCeEEEEEccCCCChhHHHhhhhCCCCCCeeeeEEEEcCccC
Q 001400 846 VNVTGAFRPGVLTALVGVSGAGKTTLMDVLAGRKTGGIIEGDIYISGYPK 895 (1085)
Q Consensus 846 ~~vs~~i~~Ge~~al~G~nGaGKSTLl~~l~g~~~~~~~~G~i~i~g~~~ 895 (1085)
+++++. +|++++++|+||+||||++..|++.... ..+.+.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~--~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKG--KGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHT--TTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHH--cCCeEEEeeccc
Confidence 467777 8999999999999999999999985431 235676665543
No 496
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.65 E-value=0.0075 Score=62.63 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.7
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhCC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLGH 187 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~~ 187 (1085)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999988753
No 497
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=94.62 E-value=0.016 Score=58.84 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=22.0
Q ss_pred EEEEeCCCCCChhHHHHHHHhhhC
Q 001400 163 LTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 163 ~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
+++|.|++||||||+.+.|+-.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998774
No 498
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.60 E-value=0.076 Score=54.29 Aligned_cols=53 Identities=17% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEec
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLS 382 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~ 382 (1085)
+.+++++||.-- +|... ++.++.++.. +..+|++-+ .+++++.+++|.|.-|.
T Consensus 81 ~~dvViIDEaqf-l~~~~----v~~l~~l~~~-~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDEI----VEIVNKIAES-GRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTHH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHHH----HHHHHHHHhC-CCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 579999999644 66442 5566666654 567777655 67789999999998876
No 499
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.58 E-value=0.17 Score=52.33 Aligned_cols=54 Identities=15% Similarity=0.256 Sum_probs=41.2
Q ss_pred CCcEeEEeCCCCCCCHHHHHHHHHHHHHHHhccCCEEEEEEe---------cChhHHHhhcCeEEEecC
Q 001400 324 PARVLFMDEISNGLDSSTTYQIIKYLKHSTRALDGTTVISLL---------QPAPEAYELFDDVILLSE 383 (1085)
Q Consensus 324 ~p~vlllDEptsgLD~~~~~~i~~~l~~~~~~~~~t~ii~~~---------q~~~~~~~~~D~ii~L~~ 383 (1085)
+.+++++||.-- +|... ++.++.++.. +..+|++=+ .+++++.+++|.|.-|..
T Consensus 101 ~~dvViIDEaQF-~~~~~----V~~l~~l~~~-~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~a 163 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGDI----VEVVQVLANR-GYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQA 163 (214)
T ss_dssp SCCEEEECCGGG-SCTTH----HHHHHHHHHT-TCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECCC
T ss_pred CCCEEEEECccc-CCHHH----HHHHHHHhhC-CCEEEEEecccccccCccccHHHHHHhcccEEeeee
Confidence 579999999876 66442 3666666553 667777777 789999999999999863
No 500
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.55 E-value=0.017 Score=60.34 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=24.9
Q ss_pred EeCCeEEEEeCCCCCChhHHHHHHHhhhC
Q 001400 158 IRPSRLTLLLGPPSSGKTTLLLALAGRLG 186 (1085)
Q Consensus 158 i~~G~~~~llGp~GsGKSTLL~~L~G~l~ 186 (1085)
++...++.|+|||||||+|..+.|+-.+.
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 45567899999999999999999997763
Done!