Query 001401
Match_columns 1084
No_of_seqs 247 out of 439
Neff 6.0
Searched_HMMs 46136
Date Thu Mar 28 23:53:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001401.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001401hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08696 C2_Dock-C C2 domains f 100.0 2.1E-52 4.6E-57 430.9 17.6 168 466-636 1-179 (179)
2 cd08697 C2_Dock-D C2 domains f 100.0 1.9E-51 4.1E-56 425.4 17.3 169 466-636 1-185 (185)
3 KOG1997 PH domain-containing p 100.0 2.7E-46 5.8E-51 459.0 2.0 574 452-1036 17-805 (1518)
4 PF14429 DOCK-C2: C2 domain in 100.0 5.5E-43 1.2E-47 366.3 11.7 171 462-636 1-184 (184)
5 cd08679 C2_DOCK180_related C2 100.0 4.4E-39 9.4E-44 335.2 16.5 164 466-636 1-178 (178)
6 cd08694 C2_Dock-A C2 domains f 100.0 5.3E-38 1.2E-42 325.3 16.4 166 466-636 1-196 (196)
7 cd08695 C2_Dock-B C2 domains f 100.0 5.3E-38 1.2E-42 325.3 16.0 164 466-636 1-189 (189)
8 KOG1998 Signaling protein DOCK 100.0 4.1E-28 8.9E-33 303.9 16.3 560 464-1074 256-861 (1548)
9 KOG1997 PH domain-containing p 99.8 5.1E-22 1.1E-26 246.3 -9.8 617 172-973 191-950 (1518)
10 PF11878 DUF3398: Domain of un 99.3 4.8E-13 1E-17 126.4 3.7 57 19-75 28-98 (98)
11 PF00792 PI3K_C2: Phosphoinosi 93.5 0.22 4.8E-06 50.5 7.4 78 520-598 23-104 (142)
12 cd04013 C2_SynGAP_like C2 doma 88.3 3.3 7.1E-05 42.6 9.8 61 516-580 38-98 (146)
13 cd08408 C2B_Synaptotagmin-14_1 87.8 2.7 5.8E-05 42.5 8.8 97 464-582 11-113 (138)
14 cd08384 C2B_Rabphilin_Doc2 C2 87.4 3.7 8E-05 40.6 9.5 60 518-582 51-110 (133)
15 cd00276 C2B_Synaptotagmin C2 d 86.5 2.8 6.1E-05 41.2 8.0 57 519-580 53-109 (134)
16 cd08397 C2_PI3K_class_III C2 d 85.5 4.8 0.0001 41.9 9.4 68 528-600 58-128 (159)
17 cd08380 C2_PI3K_like C2 domain 82.6 2.8 6E-05 43.1 6.2 66 527-595 55-123 (156)
18 cd04016 C2_Tollip C2 domain pr 82.2 5 0.00011 39.8 7.5 54 518-579 34-88 (121)
19 cd08405 C2B_Synaptotagmin-7 C2 81.0 6.6 0.00014 39.1 8.1 59 519-582 54-112 (136)
20 cd08403 C2B_Synaptotagmin-3-5- 80.9 8 0.00017 38.4 8.6 58 519-581 53-110 (134)
21 cd08392 C2A_SLP-3 C2 domain fi 80.6 8.6 0.00019 38.3 8.7 57 518-579 54-110 (128)
22 cd08388 C2A_Synaptotagmin-4-11 79.4 14 0.0003 36.7 9.7 58 519-581 54-112 (128)
23 cd08382 C2_Smurf-like C2 domai 79.3 4.7 0.0001 39.6 6.3 56 518-580 34-89 (123)
24 cd08690 C2_Freud-1 C2 domain f 79.1 5.1 0.00011 41.6 6.7 60 517-580 41-106 (155)
25 cd08686 C2_ABR C2 domain in th 78.9 17 0.00037 36.1 10.0 59 516-578 30-90 (118)
26 cd08398 C2_PI3K_class_I_alpha 78.9 11 0.00025 39.2 9.2 66 528-594 53-121 (158)
27 cd04029 C2A_SLP-4_5 C2 domain 78.2 4.3 9.3E-05 40.2 5.6 58 518-580 54-111 (125)
28 cd08395 C2C_Munc13 C2 domain t 77.9 10 0.00022 37.6 8.2 57 518-579 39-96 (120)
29 cd08682 C2_Rab11-FIP_classI C2 77.3 6.4 0.00014 38.6 6.6 58 518-580 32-92 (126)
30 cd08393 C2A_SLP-1_2 C2 domain 77.0 10 0.00022 37.4 7.9 57 519-580 55-111 (125)
31 cd08693 C2_PI3K_class_I_beta_d 76.9 5.8 0.00013 41.9 6.5 71 527-597 54-138 (173)
32 cd08410 C2B_Synaptotagmin-17 C 76.5 3.6 7.8E-05 41.2 4.6 59 519-582 53-111 (135)
33 cd04044 C2A_Tricalbin-like C2 76.0 6.8 0.00015 37.9 6.4 55 517-579 37-91 (124)
34 smart00239 C2 Protein kinase C 75.9 8.1 0.00017 34.6 6.5 56 517-579 35-90 (101)
35 cd04030 C2C_KIAA1228 C2 domain 75.6 8.3 0.00018 37.6 6.8 61 517-580 53-113 (127)
36 cd08409 C2B_Synaptotagmin-15 C 74.7 17 0.00037 36.5 9.0 57 518-579 52-108 (137)
37 cd08390 C2A_Synaptotagmin-15-1 74.4 4.9 0.00011 39.0 4.8 57 519-580 52-108 (123)
38 cd08381 C2B_PI3K_class_II C2 d 73.6 13 0.00027 36.7 7.6 59 517-580 49-108 (122)
39 cd04032 C2_Perforin C2 domain 73.5 7 0.00015 39.1 5.8 56 518-579 60-115 (127)
40 cd04012 C2A_PI3K_class_II C2 d 73.3 8.1 0.00018 40.5 6.5 68 528-595 61-135 (171)
41 cd08373 C2A_Ferlin C2 domain f 73.3 8.1 0.00018 37.9 6.1 56 519-579 28-83 (127)
42 cd08404 C2B_Synaptotagmin-4 C2 73.3 4.5 9.8E-05 40.3 4.4 58 518-580 53-110 (136)
43 cd04009 C2B_Munc13-like C2 dom 73.3 6.2 0.00014 39.3 5.4 57 518-579 56-114 (133)
44 cd08385 C2A_Synaptotagmin-1-5- 72.9 4.2 9.2E-05 39.6 4.0 58 518-580 52-109 (124)
45 cd08402 C2B_Synaptotagmin-1 C2 72.7 6.3 0.00014 39.2 5.3 59 519-582 54-112 (136)
46 cd08689 C2_fungal_Pkc1p C2 dom 72.1 5 0.00011 39.2 4.1 45 526-580 41-85 (109)
47 cd04038 C2_ArfGAP C2 domain pr 71.9 9.1 0.0002 39.2 6.3 97 518-625 34-139 (145)
48 cd04042 C2A_MCTP_PRT C2 domain 70.8 11 0.00025 36.5 6.5 54 518-579 34-87 (121)
49 cd08399 C2_PI3K_class_I_gamma 70.4 14 0.0003 39.4 7.3 68 527-594 56-137 (178)
50 cd00030 C2 C2 domain. The C2 d 70.1 13 0.00028 32.9 6.3 57 517-580 32-88 (102)
51 PF14186 Aida_C2: Cytoskeletal 69.6 45 0.00097 34.5 10.5 107 468-595 13-124 (147)
52 cd08678 C2_C21orf25-like C2 do 69.5 15 0.00032 36.1 7.0 55 518-580 32-86 (126)
53 cd08521 C2A_SLP C2 domain firs 69.4 19 0.00041 34.8 7.7 58 518-580 53-110 (123)
54 cd04043 C2_Munc13_fungal C2 do 69.1 11 0.00024 36.7 6.1 55 518-579 37-91 (126)
55 cd08688 C2_KIAA0528-like C2 do 68.9 11 0.00025 36.0 5.9 58 517-579 32-90 (110)
56 cd04041 C2A_fungal C2 domain f 68.4 12 0.00027 35.8 6.1 57 518-579 38-95 (111)
57 cd04048 C2A_Copine C2 domain f 68.0 12 0.00026 36.4 6.0 62 516-580 38-99 (120)
58 cd04039 C2_PSD C2 domain prese 66.9 17 0.00037 35.0 6.7 56 518-579 38-93 (108)
59 cd04031 C2A_RIM1alpha C2 domai 66.8 22 0.00047 34.5 7.6 58 518-580 54-112 (125)
60 cd08680 C2_Kibra C2 domain fou 64.8 10 0.00023 37.7 4.9 58 518-580 53-110 (124)
61 cd00275 C2_PLC_like C2 domain 63.2 17 0.00036 35.3 6.0 54 518-579 43-97 (128)
62 cd08677 C2A_Synaptotagmin-13 C 62.8 15 0.00033 36.5 5.5 58 517-579 47-104 (118)
63 cd04040 C2D_Tricalbin-like C2 62.8 18 0.0004 34.5 6.1 55 519-580 34-88 (115)
64 cd04033 C2_NEDD4_NEDD4L C2 dom 62.3 19 0.00041 35.5 6.2 55 517-579 39-93 (133)
65 cd08685 C2_RGS-like C2 domain 61.8 27 0.00058 34.3 7.1 58 518-580 49-106 (119)
66 cd04021 C2_E3_ubiquitin_ligase 60.1 22 0.00048 35.0 6.2 53 518-579 35-87 (125)
67 cd08375 C2_Intersectin C2 doma 60.0 20 0.00044 36.1 6.0 55 518-579 48-102 (136)
68 cd08376 C2B_MCTP_PRT C2 domain 59.9 27 0.00059 33.4 6.7 55 518-579 33-87 (116)
69 cd04051 C2_SRC2_like C2 domain 59.8 15 0.00032 35.8 4.9 56 520-580 36-94 (125)
70 cd04036 C2_cPLA2 C2 domain pre 59.4 16 0.00034 35.5 5.0 54 518-579 36-89 (119)
71 cd04015 C2_plant_PLD C2 domain 59.3 29 0.00062 35.9 7.2 52 519-579 72-123 (158)
72 PF00168 C2: C2 domain; Inter 58.6 9.9 0.00021 33.4 3.2 51 517-574 34-84 (85)
73 cd08387 C2A_Synaptotagmin-8 C2 58.5 15 0.00034 35.7 4.8 57 519-580 53-109 (124)
74 cd04035 C2A_Rabphilin_Doc2 C2 58.2 23 0.00051 34.4 6.0 56 518-579 53-109 (123)
75 cd08406 C2B_Synaptotagmin-12 C 57.7 13 0.00029 37.5 4.3 58 520-582 55-112 (136)
76 cd08377 C2C_MCTP_PRT C2 domain 57.6 25 0.00054 33.8 6.0 54 519-580 35-88 (119)
77 cd08681 C2_fungal_Inn1p-like C 57.0 24 0.00051 34.0 5.8 53 519-579 35-88 (118)
78 cd08401 C2A_RasA2_RasA3 C2 dom 56.8 33 0.00071 33.7 6.8 53 519-579 36-88 (121)
79 cd04028 C2B_RIM1alpha C2 domai 56.6 28 0.00061 35.8 6.5 56 517-579 67-122 (146)
80 cd04025 C2B_RasA1_RasA4 C2 dom 56.5 31 0.00067 33.5 6.6 54 519-579 34-87 (123)
81 cd08386 C2A_Synaptotagmin-7 C2 56.3 19 0.00041 35.0 5.0 57 519-580 53-110 (125)
82 cd04018 C2C_Ferlin C2 domain t 54.8 34 0.00073 35.4 6.7 55 519-579 48-102 (151)
83 cd04014 C2_PKC_epsilon C2 doma 54.5 27 0.00058 34.5 5.8 52 519-579 49-100 (132)
84 cd04010 C2B_RasA3 C2 domain se 54.2 22 0.00047 36.6 5.2 58 518-580 36-106 (148)
85 cd04052 C2B_Tricalbin-like C2 53.1 36 0.00078 32.7 6.3 54 518-579 26-79 (111)
86 KOG1030 Predicted Ca2+-depende 50.9 36 0.00077 35.9 6.1 53 518-578 39-91 (168)
87 cd08389 C2A_Synaptotagmin-14_1 50.7 22 0.00047 35.1 4.4 56 519-580 53-109 (124)
88 cd04022 C2A_MCTP_PRT_plant C2 49.7 33 0.00072 33.6 5.5 58 518-579 33-91 (127)
89 KOG2023 Nuclear transport rece 49.4 6.9E+02 0.015 32.1 20.8 327 634-1029 177-588 (885)
90 cd08692 C2B_Tac2-N C2 domain s 48.6 42 0.0009 34.2 6.1 57 517-579 51-108 (135)
91 cd08676 C2A_Munc13-like C2 dom 48.0 39 0.00085 35.0 5.9 51 518-579 90-140 (153)
92 cd04026 C2_PKC_alpha_gamma C2 47.4 40 0.00087 33.1 5.8 56 518-579 51-106 (131)
93 cd04054 C2A_Rasal1_RasA4 C2 do 47.4 52 0.0011 32.1 6.5 52 519-578 35-86 (121)
94 cd08407 C2B_Synaptotagmin-13 C 47.3 29 0.00063 35.3 4.8 60 518-582 55-114 (138)
95 cd04047 C2B_Copine C2 domain s 46.6 1.4E+02 0.003 28.3 9.1 57 517-579 38-96 (110)
96 cd08378 C2B_MCTP_PRT_plant C2 45.7 36 0.00078 33.4 5.1 53 519-579 30-82 (121)
97 cd04050 C2B_Synaptotagmin-like 44.8 40 0.00087 31.9 5.1 53 517-579 32-84 (105)
98 cd04037 C2E_Ferlin C2 domain f 44.4 65 0.0014 31.7 6.7 54 519-579 36-89 (124)
99 cd04027 C2B_Munc13 C2 domain s 43.9 57 0.0012 32.1 6.2 59 519-580 35-99 (127)
100 cd08391 C2A_C2C_Synaptotagmin_ 43.3 59 0.0013 31.1 6.1 54 518-579 40-93 (121)
101 cd04046 C2_Calpain C2 domain p 42.1 87 0.0019 30.8 7.2 54 518-580 36-89 (126)
102 cd08394 C2A_Munc13 C2 domain f 38.1 78 0.0017 32.0 6.1 52 518-579 32-83 (127)
103 cd04049 C2_putative_Elicitor-r 37.5 94 0.002 30.2 6.6 56 519-579 35-92 (124)
104 PF08767 CRM1_C: CRM1 C termin 37.3 3.7E+02 0.008 31.2 12.4 150 837-998 89-247 (319)
105 cd04024 C2A_Synaptotagmin-like 37.2 83 0.0018 30.5 6.2 55 518-579 36-90 (128)
106 cd04045 C2C_Tricalbin-like C2 36.1 86 0.0019 30.7 6.1 54 518-579 35-88 (120)
107 cd04011 C2B_Ferlin C2 domain s 35.7 65 0.0014 30.8 5.0 57 518-579 33-91 (111)
108 cd08691 C2_NEDL1-like C2 domai 35.3 1.2E+02 0.0025 30.9 6.9 56 518-579 46-102 (137)
109 PLN03008 Phospholipase D delta 34.1 67 0.0015 41.7 6.0 37 518-557 90-126 (868)
110 PLN03076 ARF guanine nucleotid 34.0 2.8E+02 0.0061 39.6 12.2 110 914-1027 1347-1469(1780)
111 cd08383 C2A_RasGAP C2 domain ( 30.5 1.6E+02 0.0034 28.0 6.8 39 518-557 31-69 (117)
112 PF12755 Vac14_Fab1_bd: Vacuol 29.8 81 0.0018 30.2 4.5 42 658-699 47-88 (97)
113 cd08675 C2B_RasGAP C2 domain s 28.7 1.3E+02 0.0029 30.2 6.1 58 518-580 35-105 (137)
114 cd04020 C2B_SLP_1-2-3-4 C2 dom 28.2 74 0.0016 33.1 4.3 57 518-579 65-122 (162)
115 PLN02952 phosphoinositide phos 26.7 86 0.0019 39.5 5.1 39 517-557 513-551 (599)
116 PF13513 HEAT_EZ: HEAT-like re 26.2 1.4E+02 0.003 24.7 4.8 45 660-704 9-53 (55)
117 cd04019 C2C_MCTP_PRT_plant C2 26.2 1.7E+02 0.0037 30.0 6.5 56 518-580 33-89 (150)
118 PF11841 DUF3361: Domain of un 24.6 1.8E+02 0.0039 30.6 6.2 96 843-950 32-138 (160)
119 PLN03200 cellulose synthase-in 23.8 77 0.0017 45.2 4.3 61 520-589 2014-2079(2102)
120 PF14225 MOR2-PAG1_C: Cell mor 21.8 1.1E+03 0.024 26.7 12.3 93 854-972 144-238 (262)
121 cd08379 C2D_MCTP_PRT_plant C2 21.6 2.3E+02 0.005 28.3 6.2 59 518-579 36-95 (126)
122 PF02985 HEAT: HEAT repeat; I 21.1 1.8E+02 0.0039 21.5 4.0 27 916-942 2-28 (31)
No 1
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=100.00 E-value=2.1e-52 Score=430.89 Aligned_cols=168 Identities=32% Similarity=0.487 Sum_probs=155.1
Q ss_pred ceeeeEEecccccccC----ccceEEEEEEEeCCccccCCCceee-ecCCCCCCCceeEEEEEEEcCCCCcccceEEEec
Q 001401 466 LFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAI-HPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 540 (1084)
Q Consensus 466 yrN~LYVYP~~lnFsk----aRNI~V~Ve~r~~D~~~~~~~L~~I-ygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~L 540 (1084)
|||+|||||++++|++ +|||+|+|+||++|++ ..+++|| ||++++ .|+++++|+|+|||++|.|+|||||+|
T Consensus 1 yrN~LYVyp~~~~f~~~~~~~rNI~V~v~l~~~d~~--~~~l~~i~~g~~~~-~~~~~~~S~V~yHnk~P~f~DEiKi~L 77 (179)
T cd08696 1 YRNLLYVYPQSLNFSNRLGSARNIAVKVQLMSGEDE--SQALPVIFKGSSPE-EFLTEAYTAVTYHNKSPDFYDEIKIKL 77 (179)
T ss_pred CcccEEEeccEEEecCCCCCcCCEEEEEEEEeCCCC--CccceEEEeCCCCC-ccceeEEEEEEEeCCCCcccceEEEEc
Confidence 8999999999999965 7999999999998764 4689999 777666 799999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeeccccc-CCCCceeEEEEEeccccCCcccc-eeeEEEeeccCccccccc----cccccccccC
Q 001401 541 PAVWTPMHHLLFTFFHVDLQTKL-EAPKPVVIGYAALPLSTHAQLRS-EISLPIIKELVPHYLQET----GKERLDYLED 614 (1084)
Q Consensus 541 P~~L~~~hHLLFTFyHvs~~~K~-~~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~lpp~YL~~~----~~p~~kwvd~ 614 (1084)
|++++++||||||||||||++|+ +++.+++|||||+|||++|+|++ +|+|||++++||+|++.. ..|+++|+||
T Consensus 78 P~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~~g~L~~g~~~LpV~~~~~p~~~~~~~~~~~~~~~~~~d~ 157 (179)
T cd08696 78 PADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLRNGRLQSGEFNLPVSLEKPPSNYSPDSPEVKLPGTKWVDN 157 (179)
T ss_pred CCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeecCCEEecCCEEEEEEecCCCccccccCccccCCccEEeeC
Confidence 99999999999999999999986 56678999999999999999999 999999999999887653 2589999999
Q ss_pred CcCeEEEEEEeecccccCchHH
Q 001401 615 GKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 615 ~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
||++|+|++++||||||||+||
T Consensus 158 ~k~~f~v~~~~vSsv~~~d~~l 179 (179)
T cd08696 158 HKGVFSVSVEAVSSVHTQDSYL 179 (179)
T ss_pred CeeEEEEEEEEEeeEeecCCCC
Confidence 9999999999999999999885
No 2
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=100.00 E-value=1.9e-51 Score=425.44 Aligned_cols=169 Identities=30% Similarity=0.493 Sum_probs=153.2
Q ss_pred ceeeeEEeccccccc------CccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEe
Q 001401 466 LFHCLYVYPSSVSLS------RKRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVS 539 (1084)
Q Consensus 466 yrN~LYVYP~~lnFs------kaRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~ 539 (1084)
|+|+|||||++++|+ |+|||+|+||||++|++ ..++|+|||++.|++ |+++++|+|+|||++|.|+|||||+
T Consensus 1 y~N~LYVYP~~l~~~~~k~~~kaRNI~V~V~lrd~D~~-~~~~l~~I~~g~g~~-~~~~~~s~V~yh~k~P~f~dEiKI~ 78 (185)
T cd08697 1 YKNHLYVYPLHLKYDSQKTFAKARNIAVCIEFRDSDEE-DAKPLKCIYYGPGGG-FTTSAYAAVLHHNQNPEFYDEIKIE 78 (185)
T ss_pred CcceEEEcccEEEecccccccccccEEEEEEEEeCCCC-cCccceEEecCCCCC-cceEEEEEEEEcCCCCccceeEEEe
Confidence 799999999999965 58999999999999986 457899999988877 9999999999999999999999999
Q ss_pred cCCCCCCCceEEEEEEEeecccc----cCCCCceeEEEEEecccc-CCcccc-eeeEEEeeccCc---ccccccc-cccc
Q 001401 540 LPAVWTPMHHLLFTFFHVDLQTK----LEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKELVP---HYLQETG-KERL 609 (1084)
Q Consensus 540 LP~~L~~~hHLLFTFyHvs~~~K----~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~lpp---~YL~~~~-~p~~ 609 (1084)
||++++++||||||||||||+.. ++++.|++|||||+|||+ +|+|++ +|+|||++++|| +|++... .|++
T Consensus 79 LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~~~~~l~~g~~~LpV~~~~p~~~~~~~~~~~~~~~~ 158 (185)
T cd08697 79 LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLKDKGRLNSEEQTPPVANLLPNYPDGYLSIQPHGPEV 158 (185)
T ss_pred cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeecCCCEEecCCEeeeEEecCCCCCccccccccCCCCc
Confidence 99999999999999999999742 345578999999999999 667888 999999999964 6777654 7899
Q ss_pred ccccCCcCeEEEEEEeecccccCchHH
Q 001401 610 DYLEDGKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 610 kwvd~~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
+|+||+|++|+|++++||||||||+||
T Consensus 159 ~~~d~~k~~f~v~~~~vSsv~tqd~~l 185 (185)
T cd08697 159 KWVDGGKPLFKVSTHLVSTVYTQDQHL 185 (185)
T ss_pred EEecCCeeEEEEEEEEEcceecCCCCC
Confidence 999999999999999999999999985
No 3
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=100.00 E-value=2.7e-46 Score=458.98 Aligned_cols=574 Identities=17% Similarity=0.102 Sum_probs=454.8
Q ss_pred cccccCCCCCCcccceeeeEEecccccccC----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcC
Q 001401 452 FDFRTTTRNEPFLQLFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGA 527 (1084)
Q Consensus 452 ~ef~~~~~~~P~t~yrN~LYVYP~~lnFsk----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHn 527 (1084)
+||+..+++.|++.|||.||+||..++|.. ++||.++++.+-.+ +.+..+++++|++.++++....+|+|.||+
T Consensus 17 Lef~~~E~~~~~~~yR~~Ld~q~~~lqf~~~~n~a~ni~~~~~~~~~e--~~~~~~~v~~~~st~~~~lq~~~t~v~~~d 94 (1518)
T KOG1997|consen 17 LEFPAREVIFPHTFYRNLLDVQPACLQFQILVNSAENILTRDQTMPVE--DAGIRRPVIFGKSTLREFLQEPPTTVNYHD 94 (1518)
T ss_pred cccCCccccccchhhhhHHhhhhHHHHHHHHhhhhhhhhhhhhhchhh--hhccchhhhHHHhhhHHHhccCCccccccc
Confidence 677888999999999999999999999964 69999999666644 567888999999999999999999999999
Q ss_pred CCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCCcccc-eeeEEEeec-cCcccccc--
Q 001401 528 RMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS-EISLPIIKE-LVPHYLQE-- 603 (1084)
Q Consensus 528 k~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~-lpp~YL~~-- 603 (1084)
++|+|+++.++.+|+....+||++|+|||.+|+++.++-.+++.|+.|+|++...++.. ..+++++.. .++.|...
T Consensus 95 ~S~~~~~s~l~~lda~sl~nlh~~fv~yl~~sq~~~~~~~et~~~n~~~~~~i~~el~~q~~~~k~~lfn~k~~ys~mi~ 174 (1518)
T KOG1997|consen 95 KSIEFYESRLLSLDAKSLAKLHLLFVFYLTSSQQHPGAIAETPKPNLWLLLLIRHELSLQSDNLKVKLFNCKDRYSKMII 174 (1518)
T ss_pred ccHHHHhhhhhcCCchHHHHHHHHHHhhccccccchhhhhhcccccccchhhHHHHhhhcccCCCccccCCChhhhhhcc
Confidence 99999999999999999999999999999999999888889999999999997666655 677776654 55777433
Q ss_pred -ccccccccccCCcCeEEEEEEeecccccCchHHHHHHhhhhhccccCC-C-----------CChhHHHHHHHhhcCCCh
Q 001401 604 -TGKERLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTS-P-----------PWGSELLEAINSLKNVDS 670 (1084)
Q Consensus 604 -~~~p~~kwvd~~K~~F~V~t~lvSTv~tQD~~L~~ff~~~~~~~~~~~-~-----------~~~~eL~~~l~~L~~v~~ 670 (1084)
...+.+.|+ |+.|++....+|+|++||+++.+||..++... ... | +.+.++.-+.........
T Consensus 175 ~~~~~~~~~~---r~~f~~~~~~l~sV~~~D~~~sk~f~~~~~~~-~~a~p~~ll~~~~se~~d~~e~~lS~~~~~~g~p 250 (1518)
T KOG1997|consen 175 PVYNSVGTWA---RGPFNPELIPLSSVHPQDPYLSKFFTALHSLE-QNAFPHRLLTNLLSELPDANELRLSFARTREGIP 250 (1518)
T ss_pred ccccccccee---ccccccccccceecCcCCcccCcceeeeeecc-CccchhhhhhhhhhhhccccccccchhhhhccCc
Confidence 123678898 89999999999999999999999999986543 211 0 012233344455566778
Q ss_pred hhHHHhHHHHHHHHHHHHhcC----C--cchhHHHHHHHHHHHhhhcc---cCcchhccchhhhhhhhccccCCCCCC--
Q 001401 671 TALLQFLHPVLNMLLHLIGNG----G--ETLQVAAFRAMVNILTRVQQ---ESVDDAERNRFLVNYVDYAFDDFGGRQ-- 739 (1084)
Q Consensus 671 ~~lv~FLp~ILd~Lf~ll~~~----~--~~~~~~aF~~Lv~Iv~~v~e---~~~~~~~r~~vL~sYI~y~F~~~~~~~-- 739 (1084)
+..++|++..++++..+..+. + ...+.++|.+...+++..+. .+++.++.++....|.+|.|..+....
T Consensus 251 Er~~~f~~~~lfav~~l~~~pv~Ia~~e~~l~~n~t~~~e~lik~~h~sK~as~n~k~~~c~~s~ig~Y~~plaw~ar~l 330 (1518)
T KOG1997|consen 251 ERLLKFLHQDLFAVVHLHFRPVLIAGIEAVLQGNITESDEPLIKLSHNSKAASSNLKGSKCTESPIGHYRMPLAWAARPL 330 (1518)
T ss_pred hhhhhccchhhhhcccccccceEEEeeeeecccccccccchhhccCchhhhhhhhcccccccCCcccceecccccccCCC
Confidence 999999999999998876542 2 23456778777777776654 445678889999999999997654221
Q ss_pred -----CCC---------CC----CchhHHHHHHHhh----c---------------------------------------
Q 001401 740 -----PPV---------YP----GLSTVWGSLARSK----A--------------------------------------- 758 (1084)
Q Consensus 740 -----~~~---------y~----~l~~~~~~L~rs~----~--------------------------------------- 758 (1084)
+++ ++ ..+.....+.+.. .
T Consensus 331 ~~D~ap~~~~~a~~~hLls~~ssn~~s~~is~~~~d~~SPp~~~~~~~~sde~ls~V~~~kll~~t~~~ms~~l~~~sn~ 410 (1518)
T KOG1997|consen 331 PVDGAPPALLDARNMHLLAFLSSNFASLCISLSNKDEQSPPKGYGVGIASDDLLSMVEFFLLLIVTPFALSRALYYDSNA 410 (1518)
T ss_pred CcCCCCccccccchhhhhhhcchhHHHHHHHHHhccccCCcccccCCccchhhhhhhhhHHHHhhhhHHHHHHHhccCCC
Confidence 111 10 0000000111100 0
Q ss_pred ---------------ccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccchhHHHHHHHHHHHH
Q 001401 759 ---------------KGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCL 823 (1084)
Q Consensus 759 ---------------~~~~~~~~~~~~Lk~sWFfFelIvKSMal~~~~~~~~~~pr~~rfp~~~f~d~F~~~i~~Lv~~l 823 (1084)
........++...|++|+|++...+||+.+.......+.|+.-| +.+++++++.+++...
T Consensus 411 Pte~~~~~~~~~~~qn~~~~~~~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~r-----~~~~~~~~~~~~v~~~ 485 (1518)
T KOG1997|consen 411 PTEEDKKIVERCIMQNVDCLLTERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKLR-----ELVSLLDDKTSEVLES 485 (1518)
T ss_pred CcchHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhcc-----cchhhhhhhhHHHHHH
Confidence 00012234677889999999999999999776655557888755 4478889999888877
Q ss_pred HHHHHhhhccchHHHHHHHhhHHHHHHhhhcccChhHHHHHHHHHHhhccCC-----CcchhhHhHHHHHHHHhcCcccc
Q 001401 824 LTEVHERCKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGV-----CQSVLHDCKLIFLQIVCDHDLYV 898 (1084)
Q Consensus 824 ~~~I~~r~~k~~~~a~~lN~slA~FlrdLlsimDRgfVf~LI~~Y~~~~~~~-----~~~~L~~~KldFLriIc~hehfv 898 (1084)
+.++..+..+..+.+...|.+.|+|++|+++.++++|||.+++.+...+..+ ...++..++++|++|+|.|+|++
T Consensus 486 ~~~l~~~~i~l~~~~~~~~~~~a~~~~~~~s~~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~ 565 (1518)
T KOG1997|consen 486 TLKLGFKQIILDHDLEVEMPRRAFSLRNYLSSILIQFVFLSLRHDESPLRAKGARILVILSLLDEFFLRLEILCGHEHIV 565 (1518)
T ss_pred HhhhcccccccHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhhcchh
Confidence 7666666666777888999999999999999999999999999999998642 23478999999999999999999
Q ss_pred ccCCC----------------CC----------------------CCccccHHHHHHHHHHhccCC---CHHHHHHHHHH
Q 001401 899 EMPGR----------------DP----------------------SDRNYLSSVLIQEVFLTWDHD---DLSQRAKAARI 937 (1084)
Q Consensus 899 ~lp~~----------------~p----------------------~~rhFL~glLl~el~~~L~~~---~~~lr~~Ai~~ 937 (1084)
+++.+ .+ ..+|+++|..+.|+..+++.. ...++.++.+.
T Consensus 566 ~l~lp~~~~~~~~~~~~~s~~~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l~~~~~~~~~~e~~~~~~ils~s~ 645 (1518)
T KOG1997|consen 566 QLNLPFVNQILKEMPVSNSLGATESREVLTGVLKIVRNLDDTSLVKAQQQSIGSTFLEFKLMEEPFEEKKSLDSILSDSN 645 (1518)
T ss_pred hcccccccccchhcccCccccccceeccccchHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHhhccc
Confidence 86210 00 157899999999998887622 24577788889
Q ss_pred HHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHHhhcccccc-------------------------------------
Q 001401 938 LVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYN------------------------------------- 980 (1084)
Q Consensus 938 L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~illd~~~~l~~------------------------------------- 980 (1084)
.++++++|++|+||.+...|++||.||.|.+..+.++.+.+..
T Consensus 646 ~~~~l~~~a~~pry~~~~~k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l~~~~~~~~~~~g~~~~~va~~~~ 725 (1518)
T KOG1997|consen 646 SRGLLSGHALDPRYVERTSKARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSLDSHELKLRDVNGSMPPEVALQLE 725 (1518)
T ss_pred cccccccCCCCchhhhccccccchhhhhhHHhhhhhcchhhhhhhcccccccccccccchhhhhcccccccChhhhhccC
Confidence 9999999999999999999999999999999999999987641
Q ss_pred -----------------------CChhhHhhHHHHHHHHHHhCChHHHHHHHHHhh-hhHHHHHHHHHHHHHhccccCCC
Q 001401 981 -----------------------LNAVEKREVLIVVMEIVRNLDDASLVKAWQQSI-ARTRLFFKLMEECLILFEHRKPA 1036 (1084)
Q Consensus 981 -----------------------l~~~e~r~LL~CfLwILKnl~~~~ll~~W~~~~-~~~~~fl~lL~~cl~~FeY~g~~ 1036 (1084)
++.++++++++|.|||+|+++++.+.+||.+.. .....++.||+.|+-+|+|+|+.
T Consensus 726 ~~~~~~~~~~~~~~~~~~~~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~ll~l~v~~f~~~~~~ 805 (1518)
T KOG1997|consen 726 GTPLNGYLWQASGKSLPVPSSNYLLREEIRQLLICRLGISKQALRRSLHRIWTQKLELDLENLLALLELCVLVFRYNGKK 805 (1518)
T ss_pred CCCcCCCchhhhcCCCCCCCcchhhHHHHHHHHHHHHHHHHhcchhhccchhhccChhhHHHHHHHHHHHHhhhhhcchh
Confidence 345899999999999999999998888887755 46888999999999999999985
No 4
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=100.00 E-value=5.5e-43 Score=366.27 Aligned_cols=171 Identities=37% Similarity=0.610 Sum_probs=111.8
Q ss_pred CcccceeeeEEeccccccc---C--ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceE
Q 001401 462 PFLQLFHCLYVYPSSVSLS---R--KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEI 536 (1084)
Q Consensus 462 P~t~yrN~LYVYP~~lnFs---k--aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEI 536 (1084)
|+++|||+|||||++++|+ + +|||+|+|++|++|+.. .+++|||++++++.+.++++|+|.||+++|.|+|||
T Consensus 1 ~~~~~rN~LYv~~~s~~f~k~~k~~~rNi~v~v~lr~~d~~~--~~~~~i~~~~~~~~~~~~~~S~v~yh~k~P~f~dei 78 (184)
T PF14429_consen 1 PPTDYRNDLYVYPKSGNFSKSKKSSARNIEVTVELRDSDGNI--KPLPCIYSRSSGPSFVTSYYSSVYYHNKNPQFNDEI 78 (184)
T ss_dssp ------EEEEEEEEEEE-SSSSSSS---EEEEEEEEETTS----B--S-EE-TTS--S-BS-EE----TT-SS-EEEEEE
T ss_pred CCCceeeeEEEEeCEEEECCCCCCCcccEEEEEEEEeCCCCc--cccceEECCCCCCCcceEEEEEEEecCCCCCccEEE
Confidence 7899999999999999994 3 79999999999999753 588999999998789999999999999999999999
Q ss_pred EEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCCcccc--eeeEEEee------ccCccccccccccc
Q 001401 537 KVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS--EISLPIIK------ELVPHYLQETGKER 608 (1084)
Q Consensus 537 KI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g~l~~--e~~LpV~~------~lpp~YL~~~~~p~ 608 (1084)
||+||.+++++|||+||||||+|+++++.. ++||||||||+++|+++. +|+|||++ .+|++||+......
T Consensus 79 Ki~LP~~l~~~~HLlFtf~h~s~~~~~~~~--~~~g~a~lpL~~~g~~i~dg~~~L~v~~~~~~~~~~~~~Yl~~~~~~~ 156 (184)
T PF14429_consen 79 KIQLPPDLFPKHHLLFTFYHVSCKESKEKS--KPFGYAFLPLMDNGTIIQDGEHELPVYKYDKKSKELPSNYLSLPSEAR 156 (184)
T ss_dssp EEEE-CCCCTTEEEEEEEEE---SSSS-SS---EEEEEEEESB-TS-B--SEEEEEEEEE--HHHHT-HHHHTTS--BHH
T ss_pred EEEcCchhcccEEEEEEEEeeccccccCcc--ceeEEEEEEeeeCCeEecCCCEEEEEEEcccccccCchhhccCCcccc
Confidence 999999999999999999999998765432 899999999999999554 99999983 45679998765544
Q ss_pred cccccCCcCeEEEEEEeecccccCchHH
Q 001401 609 LDYLEDGKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 609 ~kwvd~~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
.+|++++|++|+|+|++|||+||||++|
T Consensus 157 ~~~~~~~k~~~~v~t~l~ST~~tqd~~L 184 (184)
T PF14429_consen 157 GKWLDNKKPTFTVRTRLCSTVYTQDPNL 184 (184)
T ss_dssp HTTEEEECEEEEEEEEEE----------
T ss_pred cccccCCCCEEEEEEEEEcCccCCCCCC
Confidence 5899999999999999999999999886
No 5
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=100.00 E-value=4.4e-39 Score=335.23 Aligned_cols=164 Identities=35% Similarity=0.508 Sum_probs=139.9
Q ss_pred ceeeeEEecccccccC----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEecC
Q 001401 466 LFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLP 541 (1084)
Q Consensus 466 yrN~LYVYP~~lnFsk----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~LP 541 (1084)
|||+|||||++++|++ +|||+|+|++|++|++. ..+||++ ++...+..++|++|+||+++|.|+|||||+||
T Consensus 1 ~rN~LYi~p~~~~~~~~~~~~rNi~v~v~~r~~d~~~---~~~~i~~-~~~~~~~~s~~~sv~~~~k~p~f~deiKi~LP 76 (178)
T cd08679 1 LRNDLYVYPQSGELSKAKSKGRNIEITVEVRDDDGDI---IEPCISA-PGSGSELRSEYTSVVYYHKNPVFNDEIKIQLP 76 (178)
T ss_pred CCccEEEEeeEEEEcCCCCccccEEEEEEEEcCCCCc---ccccEEE-cCCCCccceeEEEEEEcCCCCCCceeEEEecC
Confidence 6999999999999997 79999999999998753 3368884 22223577788888888899999999999999
Q ss_pred CCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCccc-c-eeeEEEeecc------Cccccccccccccccc
Q 001401 542 AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLR-S-EISLPIIKEL------VPHYLQETGKERLDYL 612 (1084)
Q Consensus 542 ~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l~-~-e~~LpV~~~l------pp~YL~~~~~p~~kwv 612 (1084)
++++++|||+||||||+|+++++++.+++|||||||||+ +|+++ + +|+|||+++. +++|++ .|..+|.
T Consensus 77 ~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~~~g~~i~dg~~~L~v~k~~~~~~~~~~~yl~---~~~~~~~ 153 (178)
T cd08679 77 ADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMDKDGAFIKDGDHTLPVYKYDKRPDVGPSGYLS---LPSTLAN 153 (178)
T ss_pred CccCCCeEEEEEEEccccccccCCCccceEEEEEEeccccCCcEEcCCCEEEEEEecCCccccCcccccc---Chhhhcc
Confidence 999999999999999999987555678999999999998 88754 5 9999999987 467876 3556777
Q ss_pred cCCc-CeEEEEEEeecccccCchHH
Q 001401 613 EDGK-NAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 613 d~~K-~~F~V~t~lvSTv~tQD~~L 636 (1084)
++++ +.|+|+|++|||+||||.+|
T Consensus 154 ~~~~~~~f~v~t~l~ST~~tqd~~l 178 (178)
T cd08679 154 GKSSKDTFKIKTRLCSTILTQDKSL 178 (178)
T ss_pred cccCCceEEEEEEEEccccccCCCC
Confidence 6664 99999999999999999864
No 6
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=100.00 E-value=5.3e-38 Score=325.32 Aligned_cols=166 Identities=17% Similarity=0.216 Sum_probs=140.7
Q ss_pred ceeeeEEecccccccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEec
Q 001401 466 LFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 540 (1084)
Q Consensus 466 yrN~LYVYP~~lnFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~L 540 (1084)
.||+|||||.+++|++ +|||+|+|+||+.|| +.+++++++++|.++.++++|.|+|||++|.|+|||||.|
T Consensus 1 vRNdLYvtl~~~~f~~~~~s~~rNIeVtv~vr~~~G----~~i~~~i~~gsg~~~~se~~S~V~Yh~~~P~W~EtIKl~l 76 (196)
T cd08694 1 VRNDLYLTLVQGDFDKGSKTSDKNVEVTVSVCNEDG----KIIPGVISLGAGEEPIDEYKSVIYYQVDKPKWFETFKVAI 76 (196)
T ss_pred CCccEEEEeeeeEEcCCCCCCcceEEEEEEEECCCC----CCCceeEEcCCCCCcceeEEEEEEeecCCCCCceeEEEec
Confidence 4999999999999985 599999999999876 3577777778888899999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CC-cccc-eeeEEEeecc-------Cccccccc--c---
Q 001401 541 PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HA-QLRS-EISLPIIKEL-------VPHYLQET--G--- 605 (1084)
Q Consensus 541 P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g-~l~~-e~~LpV~~~l-------pp~YL~~~--~--- 605 (1084)
|++++++|||+|||||+||++++++ .|+||||||+|||+ +| +|.+ .|+|+|||.- +..||+.. .
T Consensus 77 P~~~~~~~HL~FtfrH~S~~~~kd~-~e~pfg~s~lpL~~~~gt~l~dG~H~L~vYK~d~~~~~~~~~~Yl~lP~~~~~~ 155 (196)
T cd08694 77 PIEDFKSSHLRFTFKHRSSNEAKDK-SEKPFALSFVKLMQENGTTLTDGEHDLIVYKVDAKKKLEDAKAYLSLPSTRAEL 155 (196)
T ss_pred ChhhCCCeEEEEEEEeeccccccCC-CCCceEEEEEeeeccCCcEEccCCEEEEEEEeccccccccccceeeCCcchhhc
Confidence 9999999999999999999987764 68999999999996 46 4667 9999999931 14698642 0
Q ss_pred ---ccc-------cccccCCcCeEEEEEEeecccccCchHH
Q 001401 606 ---KER-------LDYLEDGKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 606 ---~p~-------~kwvd~~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
++. .......|+.|.|+|.+|||++|||.+|
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lcSTklTQn~dl 196 (196)
T cd08694 156 EARKSSPSGSASNLGLSLSSKDSFQISTLVCSTKLTQNVDL 196 (196)
T ss_pred cccCCCCcccccccccccCCcceEEEEEEEecceecccCCC
Confidence 111 1134456999999999999999999764
No 7
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=100.00 E-value=5.3e-38 Score=325.32 Aligned_cols=164 Identities=19% Similarity=0.210 Sum_probs=142.3
Q ss_pred ceeeeEEecccccccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEec
Q 001401 466 LFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSL 540 (1084)
Q Consensus 466 yrN~LYVYP~~lnFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~L 540 (1084)
.||+|||||.+++|++ +|||+|+|+||++||+. .-.|||+.+|.+. .++++|+|+|||++|.|+|||||.|
T Consensus 1 vRNdlYvtl~~g~f~~~~k~~~rNIeV~v~v~~~~G~~---~~~cI~~~~g~~~-~se~~S~V~yH~~~P~W~EtiKi~l 76 (189)
T cd08695 1 VRNDLYLTLERGEFEKGGKSTAKNIEVTMVVLDADGQV---LKDCISLGSGEPP-CSEYRSFVLYHNNSPRWNETIKLPI 76 (189)
T ss_pred CcccEEEEeeeeEEcCCCCCCcceEEEEEEEEcCCCCC---ccCCEEcCCCCCc-cceEEEEEEEcCCCCCCceeEEEec
Confidence 4999999999999986 79999999999999864 2379999888876 7899999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccC-Cccc-c-eeeEEEeecc-------Cccccccc----c-
Q 001401 541 PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH-AQLR-S-EISLPIIKEL-------VPHYLQET----G- 605 (1084)
Q Consensus 541 P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~-g~l~-~-e~~LpV~~~l-------pp~YL~~~----~- 605 (1084)
|++++++|||+|||||+||++|++ ++||||||||||++ |+++ + .|+|.||+.. |.+||+.. +
T Consensus 77 P~~~~~~~HL~FtfrH~S~~~k~~---~~pfg~s~lpL~~~~gt~l~Dg~H~L~vyk~d~~~~~~~~~~YL~lp~~~~~~ 153 (189)
T cd08695 77 PIDKFRGSHLRFEFRHCSTKDKGE---KKLFGFSFVPLMREDGTTLPDGSHELYVYKCDENATFLDPALYLGLPCSKEDF 153 (189)
T ss_pred ChhhCCCeeEEEEEEEeeeccCCC---CCceEEEEEeecccCCcEEcCCcEEEEEEeccccccccCccceEECCcccccc
Confidence 999999999999999999998653 47999999999985 6655 4 9999999943 25798742 1
Q ss_pred -----ccccccccCCcCeEEEEEEeecccccCchHH
Q 001401 606 -----KERLDYLEDGKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 606 -----~p~~kwvd~~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
.++.+|..+.|+.|+|+|.+|||+||||.+|
T Consensus 154 ~~~~~~~~~~~~~~~k~~~~I~T~LcSTklTQn~~l 189 (189)
T cd08695 154 QGCPNSPSPLFSRSSKESFWIRTLLCSTKLTQNVDL 189 (189)
T ss_pred cccCCCCccccccCCcceEEEEEEEEcceEeecCCC
Confidence 1334799999999999999999999999764
No 8
>KOG1998 consensus Signaling protein DOCK180 [Signal transduction mechanisms]
Probab=99.95 E-value=4.1e-28 Score=303.91 Aligned_cols=560 Identities=16% Similarity=0.169 Sum_probs=375.8
Q ss_pred ccceeeeEEecccccccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEE
Q 001401 464 LQLFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKV 538 (1084)
Q Consensus 464 t~yrN~LYVYP~~lnFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI 538 (1084)
.+.||+|||++.+++|++ .|||.|+|.+.+.+|.. --.|+.+.+|.+. .+++++.|.||.+.|.|.|-+|+
T Consensus 256 gDvRNdlyitL~~gdf~~ggK~t~kNi~vtV~V~ev~G~~---l~d~~~~~sG~~~-i~~y~s~v~yh~~~p~w~E~~kv 331 (1548)
T KOG1998|consen 256 GDVRNDIYITLIQGDFSKGGKTTFINVEVTVSVLEVDGKQ---LFDKTESGSGEPY-IPEYHSVVLYHQKAPRWTETIKV 331 (1548)
T ss_pred cccccceeeeeeehhhhccccccceeEEEEEEEeecccce---ehhheeccCCCcc-cceeeeeeeeccCCcchhhceee
Confidence 789999999999999986 59999999999988742 3369999988875 88999999999999999999999
Q ss_pred ecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCcc-cc-eeeEEEeeccCcc------cccccc----
Q 001401 539 SLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQL-RS-EISLPIIKELVPH------YLQETG---- 605 (1084)
Q Consensus 539 ~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l-~~-e~~LpV~~~lpp~------YL~~~~---- 605 (1084)
.||..-+...|+.|.|+|++...|.. +.+..++++++-+|+ +|+. .+ .|.|-|++..-++ |+....
T Consensus 332 ~lp~~~~~~~~lR~~frf~ss~dk~~-~~~k~f~~~~v~lmrd~G~~l~dg~h~L~v~k~d~~~~~d~~n~~~~~~~e~~ 410 (1548)
T KOG1998|consen 332 ALPIDDFLDSHLRFLFRHCSTKDKTD-KEKKLFAFAFVKLMRDDGTTLEDGIHDLRVYKCDNPSLEDASNYLKLPSMEAS 410 (1548)
T ss_pred eccchhhhhhhhHHHHHhhccccccC-ccCCceeeeEEEEeccCCccccCCceeEEEEecccchhhhhhhhhhcccchHH
Confidence 99999999999999999998887754 345789999999997 5644 45 9999999975443 332210
Q ss_pred -----------cc-ccccccCCcCeEEEEEEeecccccCchHHHHHHhhhhhccccCCCCChhHHHHHHHhhcCCChhhH
Q 001401 606 -----------KE-RLDYLEDGKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTAL 673 (1084)
Q Consensus 606 -----------~p-~~kwvd~~K~~F~V~t~lvSTv~tQD~~L~~ff~~~~~~~~~~~~~~~~eL~~~l~~L~~v~~~~l 673 (1084)
.| .....-..|..|-++++.|||..|||.+++.+++|.+ ....+..++.++..++++++
T Consensus 411 ~~~k~~~~q~~s~~s~~~s~s~ke~~~ist~~~st~ltqN~dlL~ll~wr~---------~~e~~~~~L~ql~~v~~eev 481 (1548)
T KOG1998|consen 411 LYDKGMDAQRKSPSSGGFSRSSKEFFFISTLLCSTKLTQNVDLLGLLKWRM---------LPELLQDSLMQLANVSGEEL 481 (1548)
T ss_pred HHhccccccccCccccceeeeccccceeeehhhcccccccHHHHHHHHHHh---------hHHHHHHHHHHhcCCChHHH
Confidence 01 1334456789999999999999999999999999953 14568889999999999999
Q ss_pred HHhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHhhhcccCcchhccchhhhhhhhccccCCCCCCCCCCCCchhHHH
Q 001401 674 LQFLHPVLNMLLHLIGNG--GETLQVAAFRAMVNILTRVQQESVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWG 751 (1084)
Q Consensus 674 v~FLp~ILd~Lf~ll~~~--~~~~~~~aF~~Lv~Iv~~v~e~~~~~~~r~~vL~sYI~y~F~~~~~~~~~~y~~l~~~~~ 751 (1084)
++||.+||+.||.++... +++.+..||.++|.|++.+++.+ ++|. ++++..|++.||.. +..|.++.+...
T Consensus 482 ~k~l~~iL~~L~~~~~~~~~s~~~~~lVfd~lv~i~~l~~~~k-f~~~-rp~~~~~~~k~fs~-----~l~~~~l~~~l~ 554 (1548)
T KOG1998|consen 482 VKFLQDILDALFVLLEEESQSETYDELVFDVLVSILSLLADRK-FQHF-RPVMNTYIKKHFSA-----TLAYKKLTKVLK 554 (1548)
T ss_pred HHHHHHHHHHHHHhcccccchhhccchhHHHHHHHHHHHHhhc-cccc-ccccHHHHHhHHHH-----HHHHhhhHHHHH
Confidence 999999999999999775 45567789999999999998743 4554 69999999999984 445555555444
Q ss_pred HHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHhhh
Q 001401 752 SLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHERC 831 (1084)
Q Consensus 752 ~L~rs~~~~~~~~~~~~~~Lk~sWFfFelIvKSMal~~~~~~~~~~pr~~rfp~~~f~d~F~~~i~~Lv~~l~~~I~~r~ 831 (1084)
..+....+. ....-+.++++.+-++|.+||.|..+.....+ ..+++.|......++..+.+.+..-.
T Consensus 555 ~~~~~~~~~-~~~~~~r~~~~~~~~ifkiiV~S~~~~~~~~e------------~~~~~~f~~~~~~lft~~~~~l~~~~ 621 (1548)
T KOG1998|consen 555 VHMDTSISR-EHNEEIREAFKVLEYIFKIIVLSRKLFSRATE------------PSEEEEFRRQLKSLFTKILGGLASQS 621 (1548)
T ss_pred hhhcccccc-cccHHHHHHHHhhhhceEEEEeecccccchhc------------cchhHHHHHHHhhhhhhcchhhhhhh
Confidence 332222211 12224788999999999999999988765442 23557788899999999888776544
Q ss_pred cc--chHHHHHHHhhHHHHHHhhh--cccChhHHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhcCccccccCCCCCCC
Q 001401 832 KK--GLSLAKRLNSSLGFFCYDLL--SIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGRDPSD 907 (1084)
Q Consensus 832 ~k--~~~~a~~lN~slA~FlrdLl--simDRgfVf~LI~~Y~~~~~~~~~~~L~~~KldFLriIc~hehfv~lp~~~p~~ 907 (1084)
.. ....+..+-.+.+....++. .+.+....+.++-..+..+. +..+..-|+.++..|.+...|-. +-+.
T Consensus 622 ~n~~ii~~qea~l~~~~~i~~~~~~~~~~~~~el~~~i~~~~~~v~---~~~~~~~kl~~~~kiV~~~lf~~----s~~R 694 (1548)
T KOG1998|consen 622 KNKEIIRVQEAALKSIPTIDHDLLDELLFDPKELSLLILEFILNVP---EKFLTQQKLNCLKKLVDSRLFSS----SDCR 694 (1548)
T ss_pred hcccccchHHHHHhhcchhhhhhhhhcchhhHHHHHHHHHHhhccc---hhhhhHHHHHHHHHHHHhhhhhH----HHHH
Confidence 33 35566666666666655555 44454444554444444332 44577888888888888776652 1122
Q ss_pred ccccHHHHHHHHHHhccCCCHHHHHHH------HHHHHHH-HhhcCCCccCCChhhHHHHHHHHHHHHHHHHhhcccccc
Q 001401 908 RNYLSSVLIQEVFLTWDHDDLSQRAKA------ARILVVL-LCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFYN 980 (1084)
Q Consensus 908 rhFL~glLl~el~~~L~~~~~~lr~~A------i~~L~~L-L~khd~D~Ryq~~~~k~rIA~LYlPLl~illd~~~~l~~ 980 (1084)
+-||. .+.-++...+. +..+++.-| +.++-.+ .-..+-+.||. +..+-.+.--+++++-........
T Consensus 695 ~~ll~-~~~~~l~~~l~-r~~~~~~~as~~~~~~~~i~~i~~~~~~~~~~~~----~~~l~~l~~~~l~~~~~~~~~~~r 768 (1548)
T KOG1998|consen 695 EQLLP-VITKHLKNHLP-RVDELSAPASVSPECTVLISSILEVLFEKVNRYL----QSLLDSLCSALLRIVRRTVISMGR 768 (1548)
T ss_pred HHHHH-HHHHHhhccCc-chhhhhchhhccccchhhhhhhHHHHHHHHhhhh----hhhHHHHHHHHHHHHhHHHHhhhh
Confidence 22333 33333333331 111222111 1111110 11223334442 222223333344444443322211
Q ss_pred CChhhHhhHHHHHHHHHHhCChHHHHHHHHHhhh--hHH-HHHHHHHHHHHhccccCCCCccccccccCCCCCCCCCCcC
Q 001401 981 LNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIA--RTR-LFFKLMEECLILFEHRKPADGMLLGASSRSPVGEGPSSPK 1057 (1084)
Q Consensus 981 l~~~e~r~LL~CfLwILKnl~~~~ll~~W~~~~~--~~~-~fl~lL~~cl~~FeY~g~~~~~l~~~~~~~~~~~~~~~~~ 1057 (1084)
......-.++.|++.++..+++.++..+|..--. ... .+++...+-...+-+.--..+|+.+.+=.|++.....
T Consensus 769 ~~~~~~~~lvsc~la~l~~ms~~~ys~~~e~~k~~~~~~efl~e~~~m~~~L~~k~v~P~~wm~m~~l~n~v~l~~l--- 845 (1548)
T KOG1998|consen 769 VSNLILSHFVSCLLALLNQMSDQHYSHYIEEFKSDTDLKDFLMETFIMFRDLLGKNVFPSDWMVMNMLQNKVLLRSL--- 845 (1548)
T ss_pred HhhccchhhHHHhhhhhhhhhhhhHHHHHHhhcChHHHHHHHHhHHHHHHHHccCcCCchHHHHHHHhhhHHHHHHH---
Confidence 1111111899999999999999877777765321 122 2444444333333333334455555555566665555
Q ss_pred cccccchHHHhhhhhhc
Q 001401 1058 YSDRLSPSINNYLSEAS 1074 (1084)
Q Consensus 1058 ~~~~~~~~~~~~~~~~~ 1074 (1084)
.+-+.+++.+|++..+
T Consensus 846 -~~~~~~~~~~~ls~~~ 861 (1548)
T KOG1998|consen 846 -NQYAKSANQKFLSSTS 861 (1548)
T ss_pred -HHHHHhhccccCCccc
Confidence 5556677777777665
No 9
>KOG1997 consensus PH domain-containing protein [Signal transduction mechanisms]
Probab=99.79 E-value=5.1e-22 Score=246.27 Aligned_cols=617 Identities=14% Similarity=0.016 Sum_probs=359.1
Q ss_pred cceEEEEEEEeecccCcccccccccccCchh---h-------------------------hhhhhccCCeEEEEeeCCCC
Q 001401 172 VEPFYGTICLYNRERREKLSEDFYFRVLPAE---M-------------------------QDAKISYEPRGIFYLDAPSA 223 (1084)
Q Consensus 172 vEP~F~slaLyD~k~~~KISE~F~fdln~~~---~-------------------------~~~~~~~~r~aIFSvt~Ps~ 223 (1084)
.|+++.+.+++|-...|+++..+|++ ++.. + .+.+..+..+++|+|.+||.
T Consensus 191 ~~~~l~sV~~~D~~~sk~f~~~~~~~-~~a~p~~ll~~~~se~~d~~e~~lS~~~~~~g~pEr~~~f~~~~lfav~~l~~ 269 (1518)
T KOG1997|consen 191 ELIPLSSVHPQDPYLSKFFTALHSLE-QNAFPHRLLTNLLSELPDANELRLSFARTREGIPERLLKFLHQDLFAVVHLHF 269 (1518)
T ss_pred ccccceecCcCCcccCcceeeeeecc-CccchhhhhhhhhhhhccccccccchhhhhccCchhhhhccchhhhhcccccc
Confidence 68999999999999999999999999 6542 1 02455677899999999999
Q ss_pred CeEEEEEecccccCCCCCCcccc--cC--CCccchhHHHHHHHHHHhhhCCcccceeeeecccccccccccCCCCCCCCC
Q 001401 224 SVCLLIQLERPATEESGVTPSVY--SR--KEPVHLTEREKQKLQVWSRIMPYRESFAWAIVPLFDNSIGAVSGGSASPSS 299 (1084)
Q Consensus 224 dI~LViklEKvLq~qg~i~~~~y--~~--ke~~~~~~~~K~~~~~c~RLg~yRmPFAWaa~~lf~~~~~~~~~~~~~~~~ 299 (1084)
.+++|.++|++|| |+++++.| .. -+.+...+..|..++.|+++|+|||||||+++|+.++......
T Consensus 270 ~pv~Ia~~e~~l~--~n~t~~~e~lik~~h~sK~as~n~k~~~c~~s~ig~Y~~plaw~ar~l~~D~ap~~~-------- 339 (1518)
T KOG1997|consen 270 RPVLIAGIEAVLQ--GNITESDEPLIKLSHNSKAASSNLKGSKCTESPIGHYRMPLAWAARPLPVDGAPPAL-------- 339 (1518)
T ss_pred cceEEEeeeeecc--cccccccchhhccCchhhhhhhhcccccccCCcccceecccccccCCCCcCCCCccc--------
Confidence 9999999999997 78888742 11 1111112334666689999999999999999998866532100
Q ss_pred CCCCCCCCCCCCCCccccccccccccCccccCCCceEEEeecccccccccccccccCccccccCccceeEeEeeeccCCc
Q 001401 300 PLAPSVSGSSSHEGVFEPISKITLDGKLGYSGGSSVIVEISNLNKVKECYTEESLQDPKRKVHKPVKGVLRLDIEKHQTA 379 (1084)
Q Consensus 300 ~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~k~~~~~~Ed~L~d~krk~~k~i~g~l~~~i~~~~~~ 379 (1084)
. .++....
T Consensus 340 ---------------~--~a~~~hL------------------------------------------------------- 347 (1518)
T KOG1997|consen 340 ---------------L--DARNMHL------------------------------------------------------- 347 (1518)
T ss_pred ---------------c--ccchhhh-------------------------------------------------------
Confidence 0 0000000
Q ss_pred ccccccccccCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCCCcCCCCCccCCCCCCCCCCCCccccccccccCCC
Q 001401 380 HADLENISESGSVTNDSIDPGDRATDLTFSKCPSNGSDVPQTSNSKWSYGDGKEISGNGSNAPDFSADDFQAFDFRTTTR 459 (1084)
Q Consensus 380 ~~~~~~~~~~~s~~~~~~~~~~~~~~~t~s~~p~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ef~~~ef~~~~~ 459 (1084)
++|.....
T Consensus 348 ------------------------------------------------------------------------ls~~ssn~ 355 (1518)
T KOG1997|consen 348 ------------------------------------------------------------------------LAFLSSNF 355 (1518)
T ss_pred ------------------------------------------------------------------------hhhcchhH
Confidence 01111122
Q ss_pred CCCcccceeeeEEecccccccC----ccceEEEEEEEeCCccccCCCc-eeeecCCCCC----CCceeEEEEEEEcCCCC
Q 001401 460 NEPFLQLFHCLYVYPSSVSLSR----KRNLFIRVELRKDDADVRRQPL-EAIHPREPGV----SLQKWAHTQVAVGARMA 530 (1084)
Q Consensus 460 ~~P~t~yrN~LYVYP~~lnFsk----aRNI~V~Ve~r~~D~~~~~~~L-~~Iygks~~~----~f~s~~~SsV~yHnk~P 530 (1084)
+.+++.++|..|..|..+++.. ..|+.|....+.... .-.+ ..+||.+.+| .+..+..+.+.+|++.+
T Consensus 356 ~s~~is~~~~d~~SPp~~~~~~~~sde~ls~V~~~kll~~t---~~~ms~~l~~~sn~Pte~~~~~~~~~~~qn~~~~~~ 432 (1518)
T KOG1997|consen 356 ASLCISLSNKDEQSPPKGYGVGIASDDLLSMVEFFLLLIVT---PFALSRALYYDSNAPTEEDKKIVERCIMQNVDCLLT 432 (1518)
T ss_pred HHHHHHHHhccccCCcccccCCccchhhhhhhhhHHHHhhh---hHHHHHHHhccCCCCcchHHHHHHHHHHHhccccch
Confidence 3345556666666666666543 466766666665321 1122 4788888888 33455567788999999
Q ss_pred cccceEEEecCCCCCCCceEEEEEEEeecccccC---CCCceeEEEEEeccccCCcccc-eeeEEEeec--------cCc
Q 001401 531 YYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLE---APKPVVIGYAALPLSTHAQLRS-EISLPIIKE--------LVP 598 (1084)
Q Consensus 531 ~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~---~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~--------lpp 598 (1084)
++++++|+.++.-.-.++|+.||.||.+|+.+.- ...+.+++|.|+++...+.+.. ++.|+...+ .++
T Consensus 433 ~~~~~~k~a~s~~~~~~~s~~~~iy~~~~r~~p~~~r~~~~~~~~~~~~v~~~~~~l~~~~i~l~~~~~~~~~~~a~~~~ 512 (1518)
T KOG1997|consen 433 ERHERCKKALSFAKRQNSSLAFTIYHLLCRIEPCKLRELVSLLDDKTSEVLESTLKLGFKQIILDHDLEVEMPRRAFSLR 512 (1518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhcccchhhhhhhhHHHHHHHhhhcccccccHHHHhccccccccchH
Confidence 9999999999999999999999999999987632 2356899999999998877766 666665543 223
Q ss_pred cccccccccccccccC--CcCeEEEEEEeecccccCchHHHHHHhhhhhccccCC------CCChhHHHHHHHhhcCCCh
Q 001401 599 HYLQETGKERLDYLED--GKNAFKLRLRLCSSLYPINERIRDFFLEYDRHTLRTS------PPWGSELLEAINSLKNVDS 670 (1084)
Q Consensus 599 ~YL~~~~~p~~kwvd~--~K~~F~V~t~lvSTv~tQD~~L~~ff~~~~~~~~~~~------~~~~~eL~~~l~~L~~v~~ 670 (1084)
+|+.. ...|... .+-.+..-+...+.+++-+.-++.||.-|+.+..+.. +-.+..+.+... ...+.
T Consensus 513 ~~~s~----~~~~~v~~~~r~~~~~l~~~~~~~~~~~s~~~~~~~~~~~l~~~~~~~~l~lp~~~~~~~~~~~-~~s~~- 586 (1518)
T KOG1997|consen 513 NYLSS----ILIQFVFLSLRHDESPLRAKGARILVILSLLDEFFLRLEILCGHEHIVQLNLPFVNQILKEMPV-SNSLG- 586 (1518)
T ss_pred HHHHH----HHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhhcchhhcccccccccchhccc-Ccccc-
Confidence 45432 2233322 3333322233334445555666666665542211110 000111111110 01111
Q ss_pred hhHHHhHHHHHHHHHHHHhcCCc------chhHHHH------H------HHHHHHhhhcccCcchhccchhhhhhhhccc
Q 001401 671 TALLQFLHPVLNMLLHLIGNGGE------TLQVAAF------R------AMVNILTRVQQESVDDAERNRFLVNYVDYAF 732 (1084)
Q Consensus 671 ~~lv~FLp~ILd~Lf~ll~~~~~------~~~~~aF------~------~Lv~Iv~~v~e~~~~~~~r~~vL~sYI~y~F 732 (1084)
+....-.+..+.++...+...+. ..+...+ + .+++|.+..... +.-++..+.-.|++.--
T Consensus 587 ~~~~~~~~~~~~kiv~~l~~ts~v~~q~~~~g~~~l~~~~~~~~~~e~~~~~~ils~s~~~--~~l~~~a~~pry~~~~~ 664 (1518)
T KOG1997|consen 587 ATESREVLTGVLKIVRNLDDTSLVKAQQQSIGSTFLEFKLMEEPFEEKKSLDSILSDSNSR--GLLSGHALDPRYVERTS 664 (1518)
T ss_pred ccceeccccchHHHHHHHHhhhHHHHHHHHhhhHHHHHHHHhhhhhhhHHHHHHhhccccc--cccccCCCCchhhhccc
Confidence 44555566667777777654321 1111222 2 334444321111 11222344455554332
Q ss_pred cCCCC------------------------CCCCCCCCchh---HHH----HHHHhhcccCCC----CccHHH------HH
Q 001401 733 DDFGG------------------------RQPPVYPGLST---VWG----SLARSKAKGYRV----GPVYDD------VL 771 (1084)
Q Consensus 733 ~~~~~------------------------~~~~~y~~l~~---~~~----~L~rs~~~~~~~----~~~~~~------~L 771 (1084)
..+.. .+...++.+-. .|. ++..+.+..... +..... .=
T Consensus 665 k~~~~~ls~~~l~~~~~~t~~l~~~~~~~~k~~~~~~l~~~~~~~~~~~g~~~~~va~~~~~~~~~~~~~~~~~~~~~~~ 744 (1518)
T KOG1997|consen 665 KARIAYLSAPRLTFARDTTHTLLLSFLGDLKDTLTGSLDSHELKLRDVNGSMPPEVALQLEGTPLNGYLWQASGKSLPVP 744 (1518)
T ss_pred cccchhhhhhHHhhhhhcchhhhhhhcccccccccccccchhhhhcccccccChhhhhccCCCCcCCCchhhhcCCCCCC
Confidence 21110 00000000000 000 000000000000 000000 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCccchhHHHHHHHHHHHHHHHHHh-hhccchHHHHHHHhhHHHHHH
Q 001401 772 AMAWFFLELIVKSMALEQTRLFFHGLPLGEDIPPMQLRDGVFRCVMQLYDCLLTEVHE-RCKKGLSLAKRLNSSLGFFCY 850 (1084)
Q Consensus 772 k~sWFfFelIvKSMal~~~~~~~~~~pr~~rfp~~~f~d~F~~~i~~Lv~~l~~~I~~-r~~k~~~~a~~lN~slA~Flr 850 (1084)
.+.|+.++.|.++|+.++.-....+.++-.+++ .++.. .++..++..+...+.. |+ ++.. +...|.++.++.-
T Consensus 745 ~s~~l~~e~i~~~l~c~l~~~~~~~~~~l~~~~-~~~~~---~~l~~~~~ll~l~v~~f~~-~~~~-a~~~~~s~~~~k~ 818 (1518)
T KOG1997|consen 745 SSNYLLREEIRQLLICRLGISKQALRRSLHRIW-TQKLE---LDLENLLALLELCVLVFRY-NGKK-AASRNISLDFGKL 818 (1518)
T ss_pred CcchhhHHHHHHHHHHHHHHHHhcchhhccchh-hccCh---hhHHHHHHHHHHHHhhhhh-cchh-hhhHHHhhhhHHH
Confidence 234999999999999866544322333334444 22222 3444444444332221 33 2333 7899999999999
Q ss_pred hhhcccChhHHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhcCccccccCCC--CC----------------CC----c
Q 001401 851 DLLSIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHDLYVEMPGR--DP----------------SD----R 908 (1084)
Q Consensus 851 dLlsimDRgfVf~LI~~Y~~~~~~~~~~~L~~~KldFLriIc~hehfv~lp~~--~p----------------~~----r 908 (1084)
+++..++||+++.++..+-+.... +..+-|++++|...+.. .+ ++ .
T Consensus 819 ~~l~~~l~~~~~~~~~~~~~~~~r------------~~~~~~~~~~~~~~~~~~~~~~t~~~~~~e~~~~~~ls~E~~~~ 886 (1518)
T KOG1997|consen 819 DCLKTRLRGFFSRLIRTRAEMKRR------------NEPLRFSKEFFPAFNATFDLHGTKGTTLLEALQATNLSQEVLLI 886 (1518)
T ss_pred HHHHHHHHHHHHhhhhcchhhhhc------------cccchhHHHHHHHhcCCcCCccchhhhhHHHHHHhHHHHHHHHH
Confidence 999999999999999888765321 55666777777654311 11 01 1
Q ss_pred cccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHHh
Q 001401 909 NYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILD 973 (1084)
Q Consensus 909 hFL~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~illd 973 (1084)
++.++..+..++.. ...+..++++|+.++.++|..|+.|.++.+--...|.+.++||.+...++
T Consensus 887 v~~v~~~~~~~a~~-~~~~~~l~~~~~~~~~~ll~~~~se~~l~h~fA~~r~~~~kfp~l~fe~~ 950 (1518)
T KOG1997|consen 887 VLDVAQNLIRLAAY-CDANDSLLGKALRILLNLLKSHQSETVLDHVFATLRLFALKFPDLLFEMD 950 (1518)
T ss_pred HHHHHHHHHHHHhc-cCccHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHhHHHHHcCC
Confidence 22233323222222 23356899999999999999999999999888888999999998776664
No 10
>PF11878 DUF3398: Domain of unknown function (DUF3398); InterPro: IPR021816 This domain is functionally uncharacterised. This domain is found in eukaryotes. This presumed domain is about 100 amino acids in length.
Probab=99.34 E-value=4.8e-13 Score=126.36 Aligned_cols=57 Identities=23% Similarity=0.392 Sum_probs=50.6
Q ss_pred ccccccccCcCccccC-CC--CchHHHHHHhhccceEEEecccccccCCCC-----------CCcccceec
Q 001401 19 QSLAHLKLDPLIDENL-EQ--WPHLNELVQCYRADWVKDENKYGHYESVSP-----------PSFQNQIFE 75 (1084)
Q Consensus 19 ~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~y~~~w~~~~~ky~~~~~~~~-----------~~~~~q~fe 75 (1084)
..++.+|++|.||+|. ++ |+||||||++||+||.+|+|||++||+.+. ++||+|+||
T Consensus 28 ~pRe~RT~~~~vPe~~~~~a~~~~Vreci~~Yt~dW~vV~~ky~~yS~~~~~~~~~~~~~~~k~l~~qvFE 98 (98)
T PF11878_consen 28 IPRECRTVQPSVPEEAEELAEDLFVRECIKSYTSDWHVVNRKYQQYSGSYRPLLPEKRREPEKGLPKQVFE 98 (98)
T ss_pred ccccccccCCCCCchHhhhccChHHHHHHHHhCcCcEEEeeehhhcCccccccCchhhcccccCCcccccC
Confidence 3456789999999985 77 999999999999999999999999999852 369999998
No 11
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.50 E-value=0.22 Score=50.46 Aligned_cols=78 Identities=24% Similarity=0.341 Sum_probs=56.0
Q ss_pred EEEEEEcC-CCCcccceEEEecCC-CCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 001401 520 HTQVAVGA-RMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 595 (1084)
Q Consensus 520 ~SsV~yHn-k~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~ 595 (1084)
.|.+...+ ..+.|.|.+...|+. +|.....|-|++|.+....+.+... +++|++-+||+. +|.|+. .+.|++...
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~-~~lgw~n~~lFd~~~~L~~G~~~L~lW~~ 101 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKK-VPLGWVNLPLFDYRGQLRQGPQKLSLWPD 101 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EE-EEEEEEEEESB-TTSBBEEEEEEEE-EET
T ss_pred eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccce-eEEEEEEEEeECCCCcccCCCEEEEEEcC
Confidence 45555555 899999999988874 5778889999999986544332223 899999999995 788998 999999886
Q ss_pred cCc
Q 001401 596 LVP 598 (1084)
Q Consensus 596 lpp 598 (1084)
.++
T Consensus 102 ~~~ 104 (142)
T PF00792_consen 102 EEP 104 (142)
T ss_dssp -TT
T ss_pred CCC
Confidence 543
No 12
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=88.30 E-value=3.3 Score=42.58 Aligned_cols=61 Identities=15% Similarity=0.331 Sum_probs=43.9
Q ss_pred ceeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 516 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 516 ~s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
+..+.|.|.-.+.+|.|.|||.+. .+++-.+|-|+.|+.+-..+ .......||..-+|+-.
T Consensus 38 ~~vaRT~v~~~~~nP~W~E~F~f~---~~~~~~~l~v~v~k~~~~~~-~~~~~~~IG~V~Ip~~~ 98 (146)
T cd04013 38 TLYARTTSKLKTDTLFWGEHFEFS---NLPPVSVITVNLYRESDKKK-KKDKSQLIGTVNIPVTD 98 (146)
T ss_pred EEEEEEEEEcCCCCCcceeeEEec---CCCcccEEEEEEEEccCccc-cccCCcEEEEEEEEHHH
Confidence 456789999888999999999994 33344689999987632221 11134789999999753
No 13
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=87.83 E-value=2.7 Score=42.51 Aligned_cols=97 Identities=13% Similarity=0.190 Sum_probs=65.5
Q ss_pred ccceeeeEEecccc-cccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEE
Q 001401 464 LQLFHCLYVYPSSV-SLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIK 537 (1084)
Q Consensus 464 t~yrN~LYVYP~~l-nFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIK 537 (1084)
....+.|-|...++ |+.. .-+..|+|++..+++. ......|.|.-++.+|.|+|++.
T Consensus 11 ~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~-----------------~~~~~kT~v~~~t~nPvfnEtF~ 73 (138)
T cd08408 11 NALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQ-----------------EISKSKTSIRRGQPDPEFKETFV 73 (138)
T ss_pred cCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCc-----------------ceeeccceeecCCCCCcEeeeEE
Confidence 34466777766554 2221 2344566666543320 11234677888999999999999
Q ss_pred EecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 538 VSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 538 I~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
..+|..--+..-|.|+.+|.+.-. ....+|-..+++...|
T Consensus 74 f~i~~~~l~~~~L~~~V~~~~~~~-----~~~~iG~v~l~~~~~~ 113 (138)
T cd08408 74 FQVALFQLSEVTLMFSVYNKRKMK-----RKEMIGWFSLGLNSSG 113 (138)
T ss_pred EECCHHHhCccEEEEEEEECCCCC-----CCcEEEEEEECCcCCC
Confidence 999987667778999999975421 3467999999987655
No 14
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=87.39 E-value=3.7 Score=40.63 Aligned_cols=60 Identities=17% Similarity=0.111 Sum_probs=46.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
...|.|...+.+|.|+|++.+.++..-.....|.|+.++-+.. .....+|.+.++|-..|
T Consensus 51 ~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d~d~~-----~~~~~lG~~~i~l~~~~ 110 (133)
T cd08384 51 KHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWDKDIG-----KSNDYIGGLQLGINAKG 110 (133)
T ss_pred CceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEeCCCC-----CCccEEEEEEEecCCCC
Confidence 3568888899999999999999986544567899999985432 12357999999986544
No 15
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=86.46 E-value=2.8 Score=41.17 Aligned_cols=57 Identities=21% Similarity=0.237 Sum_probs=44.8
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
+.|.|...+.+|.|+|++.+.++....+..+|.|+.||.+-. .....+|.+.+||-.
T Consensus 53 ~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~~~-----~~~~~lG~~~i~l~~ 109 (134)
T cd00276 53 KKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKDSV-----GRNEVIGQVVLGPDS 109 (134)
T ss_pred ecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecCCC-----CCCceeEEEEECCCC
Confidence 456677788999999999999887655678999999987432 134679999999865
No 16
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=85.53 E-value=4.8 Score=41.95 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=51.2
Q ss_pred CCCcccceEEEecC-CCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCcccc-eeeEEEeeccCccc
Q 001401 528 RMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKELVPHY 600 (1084)
Q Consensus 528 k~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~lpp~Y 600 (1084)
..+.|+|-|+..+- -+|..+..|-||+|.++... .+.+||.+-+||+. +|.|+. .+.|.|.....+++
T Consensus 58 ~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~-----~~~~vg~~~~~lFd~~g~Lr~G~~~l~lw~~~~~d~ 128 (159)
T cd08397 58 NRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTG-----KAVPFGGTTLSLFNKDGTLRRGRQKLRVWPDVEADG 128 (159)
T ss_pred CCcccceeEEcccchhcCChhheEEEEEEEecCCC-----CceEEEEEEEeeECCCCcEecCCEEEEEEeCCCCCC
Confidence 45779886554332 23667889999999986432 35789999999995 789998 99999998766543
No 17
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=82.56 E-value=2.8 Score=43.12 Aligned_cols=66 Identities=17% Similarity=0.286 Sum_probs=51.0
Q ss_pred CCCCcccceEEEecC-CCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 001401 527 ARMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 595 (1084)
Q Consensus 527 nk~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~ 595 (1084)
..++.|+|-+...+. .+|.....|-||.|.++.... +.+.+||.+-+||+. +|.|+. .+.|.+...
T Consensus 55 ~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~~~~~---~~~~~iG~~~~~lFd~~~~L~~G~~~l~lW~~ 123 (156)
T cd08380 55 STSVTWNEWLTFDILISDLPREARLCLSIYAVSEPGS---KKEVPLGWVNVPLFDYKGKLRQGMITLNLWPG 123 (156)
T ss_pred CCCCcccceeEccchhhcCChhheEEEEEEEEecCCC---CcceEEEEEeEEeEcccCcEecCCEEEeccCC
Confidence 356889887766544 347778899999999865432 246899999999995 788988 999998764
No 18
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=82.16 E-value=5 Score=39.82 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=40.4
Q ss_pred eEEEEEEEc-CCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|... +.+|.|+|++.+.++.. ..+|.|+.|+-+.-. ....+|.+-+||-
T Consensus 34 ~~kT~v~~~~~~nP~WNe~F~f~v~~~---~~~l~~~V~d~d~~~-----~dd~iG~~~i~l~ 88 (121)
T cd04016 34 VYETPTAYNGAKNPRWNKTIQCTLPEG---VDSIYIEIFDERAFT-----MDERIAWTHITIP 88 (121)
T ss_pred EEEeEEccCCCCCCccCeEEEEEecCC---CcEEEEEEEeCCCCc-----CCceEEEEEEECc
Confidence 446788776 58999999999988753 357999999853211 2357999999984
No 19
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=81.03 E-value=6.6 Score=39.09 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=45.5
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
..|.|..++.+|.|+|++...+|..-.....|.|+.++.+-.. ....+|.+.+|+-..|
T Consensus 54 ~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~~~~~-----~~~~lG~~~i~~~~~~ 112 (136)
T cd08405 54 KKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDKDRLS-----RNDLIGKIYLGWKSGG 112 (136)
T ss_pred ccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEECCCCC-----CCcEeEEEEECCccCC
Confidence 4577888899999999999999865445678999999874321 2357999999987654
No 20
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=80.89 E-value=8 Score=38.40 Aligned_cols=58 Identities=14% Similarity=0.165 Sum_probs=44.0
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccC
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH 581 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~ 581 (1084)
..|.|.-.+.+|.|+|++.+.+|..-.....|.|+.++-+... ....+|...+|+...
T Consensus 53 ~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d~~~~~-----~~~~IG~~~l~~~~~ 110 (134)
T cd08403 53 KKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVDYDRVG-----HNELIGVCRVGPNAD 110 (134)
T ss_pred ecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC-----CCceeEEEEECCCCC
Confidence 3466666778999999999999876556678999999864321 235799999998743
No 21
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=80.61 E-value=8.6 Score=38.33 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=45.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|.-++.+|.|+|++...+|..--+.+-|.|+.+|.+-- .....+|-+-+||-
T Consensus 54 k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~~~~~-----~~~~~lG~~~i~L~ 110 (128)
T cd08392 54 KRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWHSRTL-----KRRVFLGEVLIPLA 110 (128)
T ss_pred eeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEeCCCC-----cCcceEEEEEEEcC
Confidence 4468888889999999999999988666678899999985321 12357999999984
No 22
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=79.43 E-value=14 Score=36.72 Aligned_cols=58 Identities=22% Similarity=0.277 Sum_probs=43.7
Q ss_pred EEEEEEEcCCCCcccceEEE-ecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccC
Q 001401 519 AHTQVAVGARMAYYHDEIKV-SLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH 581 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI-~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~ 581 (1084)
..|.|..++.+|.|+|++.+ .+|..-.....|.|+.++.+.- .....+|-+.+||-.-
T Consensus 54 ~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~d~~-----~~d~~lG~~~i~L~~l 112 (128)
T cd08388 54 VKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSFDRY-----SRDDVIGEVVCPLAGA 112 (128)
T ss_pred eeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEcCCC-----CCCceeEEEEEecccc
Confidence 45778888999999999999 6775544456799999886421 1345799999999643
No 23
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=79.32 E-value=4.7 Score=39.57 Aligned_cols=56 Identities=11% Similarity=0.122 Sum_probs=42.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.++. ..+|.|+.|+-....+ .....+|.+.+|+-+
T Consensus 34 ~~kT~v~~~t~nP~Wne~f~~~~~~----~~~l~i~V~d~~~~~~---~~d~~lG~~~i~l~~ 89 (123)
T cd08382 34 THSTDVAKKTLDPKWNEHFDLTVGP----SSIITIQVFDQKKFKK---KDQGFLGCVRIRANA 89 (123)
T ss_pred ceEccEEcCCCCCcccceEEEEeCC----CCEEEEEEEECCCCCC---CCCceEeEEEEEHHH
Confidence 4567788888999999999999875 5799999998633211 113579999998754
No 24
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=79.11 E-value=5.1 Score=41.61 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=46.6
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCC------CCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAV------WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~------L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++++.++.. ..+++.|-|+.||-.---+ ....+|-+.+||-.
T Consensus 41 ~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~V~d~~~f~~----~D~~iG~~~i~L~~ 106 (155)
T cd08690 41 QSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFEVYHKGGFLR----SDKLLGTAQVKLEP 106 (155)
T ss_pred ceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEEEEeCCCccc----CCCeeEEEEEEccc
Confidence 456799999999999999999999866 4557889999998632101 23578999998864
No 25
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=78.92 E-value=17 Score=36.11 Aligned_cols=59 Identities=17% Similarity=0.216 Sum_probs=43.5
Q ss_pred ceeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeeccc-c-cCCCCceeEEEEEecc
Q 001401 516 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQT-K-LEAPKPVVIGYAALPL 578 (1084)
Q Consensus 516 ~s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~-K-~~~~~e~~vGyAwLPL 578 (1084)
...+.|-+..++.+|.|+||+.+.|+ ...-|.|+.|+..+.. + .......++|=|.+.|
T Consensus 30 ~~~~KTk~i~~TlnPvWnE~F~i~l~----~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~L 90 (118)
T cd08686 30 VKKAKTRVCRDTTEPNWNEEFEIELE----GSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQL 90 (118)
T ss_pred ceeeeeeeecCCCCCccceEEEEEeC----CCCEEEEEEEEcccccccccccCcccEEEEEEEEE
Confidence 34577889999999999999999998 2447999999985332 1 1112346788888877
No 26
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=78.87 E-value=11 Score=39.16 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=49.4
Q ss_pred CCCcccceEEEecC-CCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc-CCcccc-eeeEEEee
Q 001401 528 RMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST-HAQLRS-EISLPIIK 594 (1084)
Q Consensus 528 k~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~ 594 (1084)
.++.|+|-++..|. .+|....-|-||+|-++.+.+ .+....+||.+-++|+. +|.|+. .+.|.+..
T Consensus 53 ~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~~~~~~-~k~~~~~iG~~ni~LFd~~~~Lr~G~~~L~lW~ 121 (158)
T cd08398 53 SNPRWNEWLDYDIYIPDLPRSARLCLSICSVKGRKG-AKEEHCPLAWGNINLFDYTDTLVSGKMALNLWP 121 (158)
T ss_pred CCCccceeEEcccchhcCChhheEEEEEEEEecccC-CCCceEEEEEEEEEEECCCChhhCCCEEEEEEc
Confidence 45889987665444 246678899999999865321 12245789999999995 788988 99999886
No 27
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=78.16 E-value=4.3 Score=40.18 Aligned_cols=58 Identities=17% Similarity=0.297 Sum_probs=44.8
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|.-++.+|.|+|++.+.+|..--..+.|.|+.+|-+--. +...+|-+-+||-.
T Consensus 54 ~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~d~~~~~-----~~~~lG~~~i~l~~ 111 (125)
T cd04029 54 KRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVWHYDRFG-----RNTFLGEVEIPLDS 111 (125)
T ss_pred ceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEEECCCCC-----CCcEEEEEEEeCCc
Confidence 34678888889999999999999876556778999999864211 23578999998853
No 28
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=77.95 E-value=10 Score=37.61 Aligned_cols=57 Identities=12% Similarity=0.040 Sum_probs=42.5
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCC-CCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAV-WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~-L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|...+.||.|+|++...+|.. .-+...|.|+.|+-+...+ ...+|-+-+||-
T Consensus 39 k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d~~~~-----dd~IG~~~l~l~ 96 (120)
T cd08395 39 KFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYCFARD-----DRLVGVTVLQLR 96 (120)
T ss_pred EeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEecccCC-----CCEEEEEEEEHH
Confidence 45677776667999999999999965 3455689999988643221 247999999875
No 29
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=77.27 E-value=6.4 Score=38.63 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=43.4
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCC---CCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVW---TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L---~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++-..+|... .....|-|+.||-+--. ....+|.+.+||-.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~-----~d~~iG~~~i~l~~ 92 (126)
T cd08682 32 KYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLG-----LDKFLGQVSIPLND 92 (126)
T ss_pred eeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccC-----CCceeEEEEEEHHH
Confidence 457889999999999999988888732 24567999999864211 12469999999853
No 30
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=76.96 E-value=10 Score=37.40 Aligned_cols=57 Identities=14% Similarity=0.217 Sum_probs=44.0
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..|.|..++.+|.|+|++...++..--...-|.|+.|+-+-- .....+|-+-+||-.
T Consensus 55 ~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d~~~~-----~~~~~iG~~~i~L~~ 111 (125)
T cd08393 55 RKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWHRDSL-----GRNSFLGEVEVDLGS 111 (125)
T ss_pred ccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEeCCCC-----CCCcEeEEEEEecCc
Confidence 468889999999999999999886544556799999986321 123579999999854
No 31
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=76.93 E-value=5.8 Score=41.86 Aligned_cols=71 Identities=13% Similarity=0.186 Sum_probs=52.6
Q ss_pred CCCCcccceEEEecCC-CCCCCceEEEEEEEeeccccc-----------CCCCceeEEEEEecccc-CCcccc-eeeEEE
Q 001401 527 ARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTKL-----------EAPKPVVIGYAALPLST-HAQLRS-EISLPI 592 (1084)
Q Consensus 527 nk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K~-----------~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV 592 (1084)
+..+.|+|.+...++. +|....-|-|++|-++...+. ....+.++|++=++|+. +|.|+. .+.|.+
T Consensus 54 ~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~~Lr~G~~~L~l 133 (173)
T cd08693 54 KNDPVWNETLEFDINVCDLPRMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKGQLKTGDHTLYM 133 (173)
T ss_pred CCccccceeEEcccchhcCChhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcccchhhcCCeEEEe
Confidence 4568899987766653 467788999999998643211 11235899999999995 788888 999998
Q ss_pred eeccC
Q 001401 593 IKELV 597 (1084)
Q Consensus 593 ~~~lp 597 (1084)
.....
T Consensus 134 W~~~~ 138 (173)
T cd08693 134 WTYAE 138 (173)
T ss_pred cCCCc
Confidence 76533
No 32
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=76.46 E-value=3.6 Score=41.18 Aligned_cols=59 Identities=15% Similarity=0.259 Sum_probs=45.4
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
..|.|..++.+|.|+|++...+|..-.....|.|+.|+-+... ....+|...|..+..|
T Consensus 53 ~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~d~~~-----~~~~iG~~~l~~~~~~ 111 (135)
T cd08410 53 KKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGHNVKS-----SNDFIGRIVIGQYSSG 111 (135)
T ss_pred EcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeCCCCC-----CCcEEEEEEEcCccCC
Confidence 4577888889999999999999876555668999999864322 2357999988877543
No 33
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=76.04 E-value=6.8 Score=37.86 Aligned_cols=55 Identities=20% Similarity=0.250 Sum_probs=42.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|..++.+|.|+|++.+.++ ....+|.|+.++-+-. .....+|.+.+||-
T Consensus 37 ~~~kT~~~~~~~~P~Wne~~~~~v~---~~~~~l~~~v~d~~~~-----~~d~~iG~~~~~l~ 91 (124)
T cd04044 37 ELARTKVKKDTSNPVWNETKYILVN---SLTEPLNLTVYDFNDK-----RKDKLIGTAEFDLS 91 (124)
T ss_pred cceEeeeecCCCCCcceEEEEEEeC---CCCCEEEEEEEecCCC-----CCCceeEEEEEEHH
Confidence 3456778888999999999999887 3466899998886321 12367999999975
No 34
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=75.95 E-value=8.1 Score=34.65 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=41.8
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.+..++.+|.|.|++.+.++... ..+|.|+.|+.+... ....+|.+.+||.
T Consensus 35 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~--~~~l~i~v~~~~~~~-----~~~~~G~~~~~l~ 90 (101)
T smart00239 35 EKKKTKVVKNTLNPVWNETFEFEVPPPE--LAELEIEVYDKDRFG-----RDDFIGQVTIPLS 90 (101)
T ss_pred ceEeeeEecCCCCCcccceEEEEecCcc--cCEEEEEEEecCCcc-----CCceeEEEEEEHH
Confidence 3456777777779999999988776554 779999988864321 3468999999964
No 35
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=75.57 E-value=8.3 Score=37.62 Aligned_cols=61 Identities=10% Similarity=0.043 Sum_probs=45.2
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+.++..-....+|.|+.++.+--- ......+|.+-+||-+
T Consensus 53 ~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~~~~~---~~~~~~iG~~~i~l~~ 113 (127)
T cd04030 53 TRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNSKSFL---SREKKLLGQVLIDLSD 113 (127)
T ss_pred ceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEECCccc---CCCCceEEEEEEeccc
Confidence 345688888999999999999999865445678999988753210 0134679999999854
No 36
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=74.75 E-value=17 Score=36.47 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=44.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|.-++.+|.|+|++...+|..--+..-|.|+.+|.+-.. ....+|-.-++..
T Consensus 52 ~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~~~~-----~~~~lG~v~ig~~ 108 (137)
T cd08409 52 TKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSGGVR-----KSKLLGRVVLGPF 108 (137)
T ss_pred eeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCCCCC-----CcceEEEEEECCc
Confidence 34677888899999999999999976666688999999975422 2356888888753
No 37
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=74.40 E-value=4.9 Score=39.02 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=44.8
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..|.|..++.+|.|+|++.+.+|......+.|.|+.||.+-. .....+|.+-+||-.
T Consensus 52 ~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~i~L~~ 108 (123)
T cd08390 52 LQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDVDRF-----SRHCIIGHVLFPLKD 108 (123)
T ss_pred eEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEECCcC-----CCCcEEEEEEEeccc
Confidence 457888899999999999999987665667899999985321 124679999999853
No 38
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=73.61 E-value=13 Score=36.67 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=44.3
Q ss_pred eeEEEEEEEcCCCCcccceEEEec-CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|.-++.+|.|+|+|...+ |...-...-|.|+.++-+... ....+|-..+||-.
T Consensus 49 ~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d~~~-----~~~~lG~~~i~l~~ 108 (122)
T cd08381 49 TKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHDSLV-----ENEFLGGVCIPLKK 108 (122)
T ss_pred CceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCCCCc-----CCcEEEEEEEeccc
Confidence 345677888899999999999998 766556678999999864321 23568988888843
No 39
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=73.48 E-value=7 Score=39.13 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=41.7
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|+|.+.+ ..+.....|.|+.++-+... ....+|.+.++|-
T Consensus 60 ~~kT~vi~~t~nPvWNE~F~f~~-~~~~~~~~L~v~V~D~d~~s-----~dd~IG~~~i~l~ 115 (127)
T cd04032 60 EKRTEVIWNNNNPRWNATFDFGS-VELSPGGKLRFEVWDRDNGW-----DDDLLGTCSVVPE 115 (127)
T ss_pred cccCceecCCCCCcCCCEEEEec-ccCCCCCEEEEEEEeCCCCC-----CCCeeEEEEEEec
Confidence 45677888899999999998863 22345678999999864422 2357999999985
No 40
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=73.34 E-value=8.1 Score=40.54 Aligned_cols=68 Identities=18% Similarity=0.318 Sum_probs=50.1
Q ss_pred CCCcccceEEEecC-CCCCCCceEEEEEEEeecccc----cCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 001401 528 RMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQTK----LEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 595 (1084)
Q Consensus 528 k~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~K----~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~ 595 (1084)
+++.|+|-+...+. .+|....-|-||.|-++.... .....+.++|++-+||+. +|.|+. .+.|.+...
T Consensus 61 ~~~~Wnewl~F~i~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~~L~~G~~~L~lW~~ 135 (171)
T cd04012 61 PRVVWDEWIEFPIPVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRGVLRQGSLLLGLWPP 135 (171)
T ss_pred ccccccceEECccchhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcchhhhccCCEEEEeccC
Confidence 56889887665554 346677899999999865431 111246899999999996 688988 999998764
No 41
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=73.33 E-value=8.1 Score=37.93 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=43.4
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|...+.+|.|.|++.+.++.......+|.|+.|+-+-.. ....+|.+-++|-
T Consensus 28 ~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~-----~d~~iG~~~~~l~ 83 (127)
T cd08373 28 KKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVG-----RNRLIGSATVSLQ 83 (127)
T ss_pred eecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCC-----CCceEEEEEEEhh
Confidence 5677888889999999999999765567789999999863321 2257899888874
No 42
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=73.32 E-value=4.5 Score=40.33 Aligned_cols=58 Identities=19% Similarity=0.142 Sum_probs=45.6
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|.-++.+|.|+|++.+.+|..-.++.+|.|+.|+-+--. ....+|.+.+++..
T Consensus 53 ~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~d~~~-----~~~~iG~~~~~~~~ 110 (136)
T cd08404 53 KKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDSDRVT-----KNEVIGRLVLGPKA 110 (136)
T ss_pred eEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEECCCCC-----CCccEEEEEECCcC
Confidence 34577777889999999999999976667789999999864311 23579999999865
No 43
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=73.27 E-value=6.2 Score=39.26 Aligned_cols=57 Identities=26% Similarity=0.272 Sum_probs=43.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCC--CCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAV--WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~--L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|..++-+|.|+|++.+.++.. .....+|.|+.++-+.-. ....+|.+.+||-
T Consensus 56 ~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~V~d~d~~~-----~d~~iG~~~i~l~ 114 (133)
T cd04009 56 TPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFTVKDYDLLG-----SNDFEGEAFLPLN 114 (133)
T ss_pred ccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEEEEecCCCC-----CCcEeEEEEEeHH
Confidence 45678888999999999999998753 234678999999864321 2357999999974
No 44
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=72.91 E-value=4.2 Score=39.63 Aligned_cols=58 Identities=21% Similarity=0.251 Sum_probs=43.9
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.+|..-..+..|.|+.++-+.- .....+|-+.+||-.
T Consensus 52 ~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~~-----~~~~~lG~~~i~l~~ 109 (124)
T cd08385 52 KFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDRF-----SKHDLIGEVRVPLLT 109 (124)
T ss_pred ceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCCC-----CCCceeEEEEEecCc
Confidence 3457788889999999999999986444456899999986421 123579999999864
No 45
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=72.71 E-value=6.3 Score=39.22 Aligned_cols=59 Identities=20% Similarity=0.249 Sum_probs=45.0
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
..|.|.-++.+|.|+|++.+.+|..-....+|.|+.++.+... ....+|.+.+|+-..|
T Consensus 54 ~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d~~~~~-----~~~~iG~~~i~~~~~~ 112 (136)
T cd08402 54 KKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLDYDRIG-----KNDPIGKVVLGCNATG 112 (136)
T ss_pred eeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEeCCCCC-----CCceeEEEEECCccCC
Confidence 3466778889999999999999876555679999999875321 2357999999986533
No 46
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=72.07 E-value=5 Score=39.18 Aligned_cols=45 Identities=16% Similarity=0.271 Sum_probs=35.3
Q ss_pred cCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 526 GARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 526 Hnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+||.|+||+.|.+ + ..+-+-+++|..+ + ....|||.-|++|-.
T Consensus 41 ~srnd~WnE~F~i~V--d--k~nEiel~VyDk~-----~-~~~~Pi~llW~~~sd 85 (109)
T cd08689 41 PSRNDRWNEDFEIPV--E--KNNEEEVIVYDKG-----G-DQPVPVGLLWLRLSD 85 (109)
T ss_pred CCCCCcccceEEEEe--c--CCcEEEEEEEeCC-----C-CeecceeeehhhHHH
Confidence 359999999999888 2 4678999999751 1 245799999999863
No 47
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=71.89 E-value=9.1 Score=39.15 Aligned_cols=97 Identities=26% Similarity=0.321 Sum_probs=59.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc---cCCc---ccc-eeeE
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS---THAQ---LRS-EISL 590 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl---~~g~---l~~-e~~L 590 (1084)
.+.|.|..++.+|.|+|++.+.+|.. ..+|-|+.|+-+.-. ....+|.+.++|- ...+ +.. .-.-
T Consensus 34 ~~kT~vvk~t~nP~WnE~f~f~i~~~---~~~l~~~V~D~d~~~-----~dd~iG~a~i~l~~l~~~~~~~~~~~~~~~~ 105 (145)
T cd04038 34 KVKTRVIKKNLNPVWNEELTLSVPNP---MAPLKLEVFDKDTFS-----KDDSMGEAEIDLEPLVEAAKLDHLRDTPGGT 105 (145)
T ss_pred EEEeeeEcCCCCCeecccEEEEecCC---CCEEEEEEEECCCCC-----CCCEEEEEEEEHHHhhhhhhhhccccCCCCE
Confidence 46788999999999999999999854 568999999864211 2357999998663 2222 222 1112
Q ss_pred EEeeccCc--cccccccccccccccCCcCeEEEEEEe
Q 001401 591 PIIKELVP--HYLQETGKERLDYLEDGKNAFKLRLRL 625 (1084)
Q Consensus 591 pV~~~lpp--~YL~~~~~p~~kwvd~~K~~F~V~t~l 625 (1084)
.+.+-+|. ++|.. ...+-|.| ||-.=.+.++|
T Consensus 106 ~~~~~~~~~~~~~~~--~~~~~~~~-g~~~~~~~l~l 139 (145)
T cd04038 106 QIKKVLPSVENCLAS--ESHITWKD-GKIVQDLVLKL 139 (145)
T ss_pred EEEEEecCCCceEec--cceEEEEC-CEEEEEEEEEe
Confidence 33344442 56543 12366775 45444444443
No 48
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=70.77 E-value=11 Score=36.52 Aligned_cols=54 Identities=13% Similarity=0.154 Sum_probs=41.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.+...+.+|.|+|++.+.++- ...+|.|+.|+-+... ....+|.+-+||-
T Consensus 34 ~~kT~~~~~t~nP~Wne~f~f~v~~---~~~~l~~~v~D~d~~~-----~~~~iG~~~~~l~ 87 (121)
T cd04042 34 VYKSKTIYKNLNPVWDEKFTLPIED---VTQPLYIKVFDYDRGL-----TDDFMGSAFVDLS 87 (121)
T ss_pred EEEeeeccCCCCCccceeEEEEecC---CCCeEEEEEEeCCCCC-----CCcceEEEEEEHH
Confidence 4567788889999999999998763 2468999999863321 2357999999984
No 49
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=70.43 E-value=14 Score=39.40 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=48.8
Q ss_pred CCCCcccceEEEecC-CCCCCCceEEEEEEEeeccc-----------ccCCCCceeEEEEEecccc-CCcccc-eeeEEE
Q 001401 527 ARMAYYHDEIKVSLP-AVWTPMHHLLFTFFHVDLQT-----------KLEAPKPVVIGYAALPLST-HAQLRS-EISLPI 592 (1084)
Q Consensus 527 nk~P~F~DEIKI~LP-~~L~~~hHLLFTFyHvs~~~-----------K~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV 592 (1084)
+.++.|+|-++..|- .+|.....|-|++|-+.-+. +....++.++|++-++|+. +|.|++ .+.|.+
T Consensus 56 ~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~~Lr~G~~~L~~ 135 (178)
T cd08399 56 TEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKAPALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRFLLRTGEYVLHM 135 (178)
T ss_pred CCCccccccEECccccccCChhhEEEEEEEEEecCcccccccccccccccccccceEEEEEEEEEcCCCceecCCEEEEE
Confidence 356889986554333 23667889999999984321 1112246899999999995 789998 999988
Q ss_pred ee
Q 001401 593 IK 594 (1084)
Q Consensus 593 ~~ 594 (1084)
..
T Consensus 136 W~ 137 (178)
T cd08399 136 WQ 137 (178)
T ss_pred ec
Confidence 76
No 50
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=70.06 E-value=13 Score=32.93 Aligned_cols=57 Identities=16% Similarity=0.198 Sum_probs=43.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.+...+.+|.|.+++.+.++.. ...+|.|.+||.+-.. ....+|-+.+++-.
T Consensus 32 ~~~~T~~~~~~~~P~w~~~~~~~~~~~--~~~~l~i~v~~~~~~~-----~~~~ig~~~~~l~~ 88 (102)
T cd00030 32 QKFKTKVVKNTLNPVWNETFEFPVLDP--ESDTLTVEVWDKDRFS-----KDDFLGEVEIPLSE 88 (102)
T ss_pred ceEecceeCCCCCCcccceEEEEccCC--CCCEEEEEEEecCCCC-----CCceeEEEEEeHHH
Confidence 344566666678999999999999875 5678999999864321 24679999988754
No 51
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=69.58 E-value=45 Score=34.52 Aligned_cols=107 Identities=15% Similarity=0.292 Sum_probs=55.4
Q ss_pred eeeEEecccccccCccc---eEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEecCC-C
Q 001401 468 HCLYVYPSSVSLSRKRN---LFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPA-V 543 (1084)
Q Consensus 468 N~LYVYP~~lnFskaRN---I~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~LP~-~ 543 (1084)
..|.|...++.+..+.+ =.++|.++|.+|.+ ++..--.+-+.... ...-.|+-.|.|+-|. +
T Consensus 13 t~l~v~Iekiglkda~~~~~P~~tVSV~D~~G~~----ve~~QdTpv~~~~~----------~~yv~f~~~v~lqtple~ 78 (147)
T PF14186_consen 13 TYLSVFIEKIGLKDASQYIDPYFTVSVKDGNGKD----VEPPQDTPVGSRRE----------DNYVHFNNTVHLQTPLEK 78 (147)
T ss_dssp -EEEEEEEEEE-TTGGG-EEEEEEEEEE-TTS-B----SS--EE--S-SEEE----------TTEEEEEEEEE-SS-GGG
T ss_pred ceEEEEEEEEEECChHHccCCeEEEEEECCCCCC----ccccccCCCccccc----------CCEEEEcccEEEcCCHHH
Confidence 34567777777665544 46999999998743 22221111111000 1122355567777774 5
Q ss_pred CCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCCcccc-eeeEEEeec
Q 001401 544 WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS-EISLPIIKE 595 (1084)
Q Consensus 544 L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~ 595 (1084)
|.++.=++|+|.|..-+++ +...-+|||+++ +.+.. ...|++|+.
T Consensus 79 lp~Gaai~fE~kH~K~kk~----k~S~kcw~fme~---dei~~g~~~lely~K 124 (147)
T PF14186_consen 79 LPKGAAIFFEFKHYKPKKK----KTSTKCWAFMEL---DEIKPGPVVLELYKK 124 (147)
T ss_dssp S-TT-EEEEEEEEEETTTT----CEEEEEEEEEEG---GG--SEEEEE--EES
T ss_pred CCCceEEEEEEEeeeccce----eeeeeEEEEEEh---hhccCCceeeehhcC
Confidence 8889999999999844332 334569999998 23434 667777763
No 52
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=69.47 E-value=15 Score=36.15 Aligned_cols=55 Identities=13% Similarity=0.310 Sum_probs=42.1
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|...+.+|.|+|++.+.++. .+..|.|+.|+-+-.. ....+|.+-+||-.
T Consensus 32 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~~~v~d~~~~~-----~~~~lG~~~i~l~~ 86 (126)
T cd08678 32 KYQSSTQKNTSNPFWDEHFLFELSP---NSKELLFEVYDNGKKS-----DSKFLGLAIVPFDE 86 (126)
T ss_pred EEEeEEEecCCCCccCceEEEEeCC---CCCEEEEEEEECCCCC-----CCceEEEEEEeHHH
Confidence 4678899889999999999988863 2567999999864321 23578999999853
No 53
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=69.41 E-value=19 Score=34.84 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=43.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|.-++.+|.|+|++...++..--....|.|+.+|-+-- .....+|-+.+||-.
T Consensus 53 ~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~d~~~~-----~~~~~iG~~~i~l~~ 110 (123)
T cd08521 53 KRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVWHHDRF-----GRNTFLGEVEIPLDS 110 (123)
T ss_pred eeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEEeCCCC-----cCCceeeEEEEeccc
Confidence 3567777788999999999999886544567899998875321 123579999999853
No 54
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=69.11 E-value=11 Score=36.69 Aligned_cols=55 Identities=20% Similarity=0.214 Sum_probs=42.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.++.. ...+|.|+.|+-+-.. ....+|-+-++|-
T Consensus 37 ~~kT~~~~~t~~P~Wne~f~f~i~~~--~~~~L~i~v~d~d~~~-----~~~~iG~~~i~l~ 91 (126)
T cd04043 37 IAKTRTIYDTLNPRWDEEFELEVPAG--EPLWISATVWDRSFVG-----KHDLCGRASLKLD 91 (126)
T ss_pred eecccEecCCCCCcccceEEEEcCCC--CCCEEEEEEEECCCCC-----CCceEEEEEEecC
Confidence 35677888899999999999998875 4568999988764221 2457899888863
No 55
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=68.90 E-value=11 Score=36.05 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=43.7
Q ss_pred eeEEEEEEEcCCCCcc-cceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYY-HDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F-~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|...+.+|.| .|++.+.+|.......+|.|+.|+-+--. ....+|-+.++|-
T Consensus 32 ~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~-----~~~~iG~~~~~l~ 90 (110)
T cd08688 32 TTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYS-----ANDAIGKVYIDLN 90 (110)
T ss_pred eeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCC-----CCCceEEEEEeHH
Confidence 4456888888899999 99999999876544568999999864321 2356898888874
No 56
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=68.38 E-value=12 Score=35.84 Aligned_cols=57 Identities=12% Similarity=0.059 Sum_probs=42.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCC-CCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.+.. ++....+|.|+.++-+--. ....+|.+-+||-
T Consensus 38 ~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~-----~dd~lG~~~i~l~ 95 (111)
T cd04041 38 LYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDRFT-----ADDRLGRVEIDLK 95 (111)
T ss_pred cEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCCCC-----CCCcceEEEEEHH
Confidence 3568899999999999999987654 3445678999999864321 2246899888874
No 57
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=68.04 E-value=12 Score=36.39 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=44.8
Q ss_pred ceeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 516 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 516 ~s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...+.|.|...+.+|.|.|++.+.++.. ...+|.|++|+.+...+. ......+|.+-+|+-+
T Consensus 38 ~~~~kT~vi~~t~nP~wne~f~f~~~~~--~~~~l~~~V~d~d~~~~~-~~~~d~iG~~~i~l~~ 99 (120)
T cd04048 38 VEIGRTEVIKNNLNPDFVTTFTVDYYFE--EVQKLRFEVYDVDSKSKD-LSDHDFLGEAECTLGE 99 (120)
T ss_pred EEeccEeEeCCCCCCCceEEEEEEEEeE--eeeEEEEEEEEecCCcCC-CCCCcEEEEEEEEHHH
Confidence 3456788999999999999999886543 445899999997542100 1134679999998753
No 58
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=66.88 E-value=17 Score=35.04 Aligned_cols=56 Identities=7% Similarity=0.012 Sum_probs=41.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.+.... ...-|.|+.|+-+... ....+|-+-+||-
T Consensus 38 ~~kT~v~~~t~nPvWne~f~f~v~~~~-~~~~L~~~V~D~d~~~-----~dd~IG~~~l~L~ 93 (108)
T cd04039 38 VFRTSWRRHTLNPVFNERLAFEVYPHE-KNFDIQFKVLDKDKFS-----FNDYVATGSLSVQ 93 (108)
T ss_pred eEeeeeecCCCCCcccceEEEEEeCcc-CCCEEEEEEEECCCCC-----CCcceEEEEEEHH
Confidence 457889999999999999988775332 2346889998864321 2357999999884
No 59
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=66.76 E-value=22 Score=34.48 Aligned_cols=58 Identities=12% Similarity=0.047 Sum_probs=41.7
Q ss_pred eEEEEEEEcCCCCcccceEEEec-CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|.|++-+.+ +..-.....|.|+.++-+.. .....+|.+.+||-.
T Consensus 54 ~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l~~ 112 (125)
T cd04031 54 KRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWDYDRD-----GENDFLGEVVIDLAD 112 (125)
T ss_pred cccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEeCCCC-----CCCcEeeEEEEeccc
Confidence 34577888899999999998874 42223456899999986321 123579999999854
No 60
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=64.75 E-value=10 Score=37.66 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=46.6
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|.+...+|..--.+..|.|+.+|.+-- .....+|-+-++|-+
T Consensus 53 ~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~~~~~~-----~~~~~lG~~~i~L~~ 110 (124)
T cd08680 53 LFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVCSVGPD-----QQEECLGGAQISLAD 110 (124)
T ss_pred eEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEEeCCCC-----CceeEEEEEEEEhhh
Confidence 4568888899999999999999998877889999999997421 123578888888753
No 61
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=63.19 E-value=17 Score=35.34 Aligned_cols=54 Identities=19% Similarity=0.290 Sum_probs=38.2
Q ss_pred eEEEEEEEcCC-CCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGAR-MAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk-~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.+..++- +|.|.|++.+.++.. +...|.|++|+-+-. ....+|.+.+||-
T Consensus 43 ~~kT~~~~~~~~~P~w~e~f~f~~~~~--~~~~l~~~V~d~~~~------~~~~iG~~~~~l~ 97 (128)
T cd00275 43 KFKTKVVKNNGFNPVWNETFEFDVTVP--ELAFLRFVVYDEDSG------DDDFLGQACLPLD 97 (128)
T ss_pred cEeeeeecCCCcCCccCCcEEEEEeCC--CeEEEEEEEEeCCCC------CCcEeEEEEEEhH
Confidence 34566766775 999999999988732 235788888875321 2357888888875
No 62
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=62.77 E-value=15 Score=36.49 Aligned_cols=58 Identities=22% Similarity=0.176 Sum_probs=47.6
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|...+.||.|+|++...+|..--++-.|.|+.++-+--.+ ..+||=.-+||-
T Consensus 47 ~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~Drfs~-----~d~IG~v~l~l~ 104 (118)
T cd08677 47 KEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCDRFSR-----HSTLGELRLKLA 104 (118)
T ss_pred cEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCCCCCC-----CceEEEEEEccc
Confidence 3557999999999999999999999988888999999998753222 246898888875
No 63
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=62.75 E-value=18 Score=34.51 Aligned_cols=55 Identities=18% Similarity=0.200 Sum_probs=41.7
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
+.|.|..++.+|.|++++-+.++.. ...+|.|+.||-+.. .....+|.+-+|+-.
T Consensus 34 ~~T~v~~~~~~P~Wne~f~~~~~~~--~~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~~ 88 (115)
T cd04040 34 FKTKTIKKTLNPVWNESFEVPVPSR--VRAVLKVEVYDWDRG-----GKDDLLGSAYIDLSD 88 (115)
T ss_pred eeeceecCCCCCcccccEEEEeccC--CCCEEEEEEEeCCCC-----CCCCceEEEEEEHHH
Confidence 5677888889999999999998854 467899998886421 123568999988753
No 64
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=62.34 E-value=19 Score=35.46 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=41.0
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+...|.|...+-+|.|++++.+.++.. ..+|.|+.++-+-- .....+|.+.+|+-
T Consensus 39 ~~~kT~v~~~t~nP~Wne~f~f~~~~~---~~~l~~~v~d~~~~-----~~~~~iG~~~i~l~ 93 (133)
T cd04033 39 DSVQTKTIKKTLNPKWNEEFFFRVNPR---EHRLLFEVFDENRL-----TRDDFLGQVEVPLN 93 (133)
T ss_pred cceeeeEEcCCCCCcEeeEEEEEEcCC---CCEEEEEEEECCCC-----CCCCeeEEEEEEHH
Confidence 355788888889999999999988753 46899998875321 12357999999964
No 65
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=61.84 E-value=27 Score=34.28 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=42.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|.-++.+|.|+|++...+|.... .+.|.|+.++-.-. ......+|-+-+||-+
T Consensus 49 ~~kT~v~~~t~~P~~nE~F~f~v~~~~~-~~~l~v~V~~~~~~----~~~~~~lG~~~i~l~~ 106 (119)
T cd08685 49 RQKTSTVPDSANPLFHETFSFDVNERDY-QKRLLVTVWNKLSK----SRDSGLLGCMSFGVKS 106 (119)
T ss_pred eEeCccccCCCCCccccEEEEEcChHHh-CCEEEEEEECCCCC----cCCCEEEEEEEecHHH
Confidence 4467788788999999999999986543 34688888875321 1123689999999853
No 66
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=60.07 E-value=22 Score=35.01 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=40.5
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|++++.+.++ +..+|-|+.|+-+-. .....+|.+-++|-
T Consensus 35 ~~kT~v~~~t~~P~Wne~f~~~~~----~~~~l~~~V~d~~~~-----~~~~~iG~~~i~l~ 87 (125)
T cd04021 35 PKKTEVSKKTSNPKWNEHFTVLVT----PQSTLEFKVWSHHTL-----KADVLLGEASLDLS 87 (125)
T ss_pred cEEeeeeCCCCCCccccEEEEEeC----CCCEEEEEEEeCCCC-----CCCcEEEEEEEEHH
Confidence 456778888999999999998875 457899998885321 12367999999863
No 67
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=60.01 E-value=20 Score=36.05 Aligned_cols=55 Identities=13% Similarity=0.161 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.++. ....+|.|+.|+-+-.. ....+|.+.+||-
T Consensus 48 ~~kT~vi~~t~nP~Wne~f~f~v~~--~~~~~l~i~V~D~d~~~-----~d~~lG~~~i~l~ 102 (136)
T cd08375 48 EHKTKVVSDTLNPKWNSSMQFFVKD--LEQDVLCITVFDRDFFS-----PDDFLGRTEIRVA 102 (136)
T ss_pred eeeccccCCCCCCccCceEEEEecC--ccCCEEEEEEEECCCCC-----CCCeeEEEEEEHH
Confidence 3568889999999999999887753 23568999998754211 2357999999984
No 68
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=59.90 E-value=27 Score=33.45 Aligned_cols=55 Identities=16% Similarity=0.143 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.++.. ...+|-|+.|+-+-. .....+|.+-++|-
T Consensus 33 ~~kT~v~~~t~nP~Wne~f~f~~~~~--~~~~l~v~v~d~~~~-----~~~~~iG~~~~~l~ 87 (116)
T cd08376 33 KYKSKVCSKTLNPQWLEQFDLHLFDD--QSQILEIEVWDKDTG-----KKDEFIGRCEIDLS 87 (116)
T ss_pred eEecccccCCCCCceeEEEEEEecCC--CCCEEEEEEEECCCC-----CCCCeEEEEEEeHH
Confidence 35677888899999999999888743 356899998875321 12357999999974
No 69
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=59.76 E-value=15 Score=35.84 Aligned_cols=56 Identities=14% Similarity=0.170 Sum_probs=39.7
Q ss_pred EEEEEEc-CCCCcccceEEEecCCCC--CCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 520 HTQVAVG-ARMAYYHDEIKVSLPAVW--TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 520 ~SsV~yH-nk~P~F~DEIKI~LP~~L--~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.|.|..+ +.+|.|+|++.+.++... ....+|.|+.|+-.- . .....+|.+.+||-+
T Consensus 36 ~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~--~---~~~~~lG~~~i~l~~ 94 (125)
T cd04051 36 STPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERP--S---LGDKLIGEVRVPLKD 94 (125)
T ss_pred ccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCC--C---CCCCcEEEEEEEHHH
Confidence 4555544 589999999999998653 345789999987421 1 123579999999864
No 70
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=59.40 E-value=16 Score=35.46 Aligned_cols=54 Identities=11% Similarity=0.103 Sum_probs=40.6
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|...+.+|.|+|++.+.++.. ....|.|+.|+-+-. ....+|.+-+||-
T Consensus 36 ~~kT~vv~~t~nP~Wne~f~f~i~~~--~~~~l~v~v~d~d~~------~~~~iG~~~~~l~ 89 (119)
T cd04036 36 KKRTKTIKNSINPVWNETFEFRIQSQ--VKNVLELTVMDEDYV------MDDHLGTVLFDVS 89 (119)
T ss_pred cCccceecCCCCCccceEEEEEeCcc--cCCEEEEEEEECCCC------CCcccEEEEEEHH
Confidence 34677888899999999999988765 345799999985321 2346899988884
No 71
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=59.30 E-value=29 Score=35.91 Aligned_cols=52 Identities=21% Similarity=0.326 Sum_probs=38.8
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|..++.+|.|+|++.+.++- ...+|.|+.++-+. .+ ...+|-+.+||-
T Consensus 72 ~rT~v~~~~~nP~WnE~F~~~~~~---~~~~l~~~V~d~d~---~~---~~~IG~~~i~l~ 123 (158)
T cd04015 72 ARTRVIENSENPVWNESFHIYCAH---YASHVEFTVKDNDV---VG---AQLIGRAYIPVE 123 (158)
T ss_pred eEEEEeCCCCCCccceEEEEEccC---CCCEEEEEEEeCCC---cC---CcEEEEEEEEhH
Confidence 467788889999999999987753 34589998887432 11 257999999974
No 72
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=58.63 E-value=9.9 Score=33.43 Aligned_cols=51 Identities=20% Similarity=0.169 Sum_probs=37.9
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEE
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYA 574 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyA 574 (1084)
..+.|.+..+..+|.|+|++.+.++....+. |.|+.|+..... ....+|.+
T Consensus 34 ~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~--l~~~V~~~~~~~-----~~~~iG~~ 84 (85)
T PF00168_consen 34 TKYKTKVKKNTSNPVWNEEFEFPLDDPDLDS--LSFEVWDKDSFG-----KDELIGEV 84 (85)
T ss_dssp EEEEECCBSSBSSEEEEEEEEEEESHGCGTE--EEEEEEEETSSS-----SEEEEEEE
T ss_pred eeeeeeeeeccccceeeeeeeeeeecccccc--eEEEEEECCCCC-----CCCEEEEE
Confidence 4467788888899999999999977655554 999999864322 24677864
No 73
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=58.52 E-value=15 Score=35.72 Aligned_cols=57 Identities=16% Similarity=0.288 Sum_probs=43.6
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..|.|..++.+|.|.|++.+.+|..-....+|.|+.++.+-- .....+|.+-+||-.
T Consensus 53 ~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~~~-----~~~~~iG~~~i~l~~ 109 (124)
T cd08387 53 KQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFDQF-----SRDECIGVVELPLAE 109 (124)
T ss_pred EeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECCCC-----CCCceeEEEEEeccc
Confidence 457788889999999999999987655667899999886321 123578999888753
No 74
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=58.16 E-value=23 Score=34.40 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=41.9
Q ss_pred eEEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|..++.+|.|++++... ++..-..+.+|.|+.|+-+.. ....+|.+.+||-
T Consensus 53 ~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d~~~~------~~~~iG~~~i~l~ 109 (123)
T cd04035 53 KLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLDEDRF------GNDFLGETRIPLK 109 (123)
T ss_pred ceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEEcCCc------CCeeEEEEEEEcc
Confidence 4567788889999999999984 554333456899999886432 2357999999984
No 75
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=57.72 E-value=13 Score=37.48 Aligned_cols=58 Identities=16% Similarity=0.142 Sum_probs=45.7
Q ss_pred EEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 520 HTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 520 ~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
.|.|..++.+|.|+|++...+|..--+...|.|+.++.+--. ....+|-..|+....|
T Consensus 55 kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~d~~~-----~~~~iG~v~lg~~~~g 112 (136)
T cd08406 55 KTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAESTEDG-----KTPNVGHVIIGPAASG 112 (136)
T ss_pred CCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeCCCCC-----CCCeeEEEEECCCCCC
Confidence 477888899999999999999987777889999999964321 2346899888876544
No 76
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=57.60 E-value=25 Score=33.76 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=39.9
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
+.|.+..++.+|.|.+++.+.++. ...+|.|+.|+-+.. .....+|.+.+||-+
T Consensus 35 ~~T~~~~~t~nP~W~e~f~~~~~~---~~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~~ 88 (119)
T cd08377 35 LQTHTIYKTLNPEWNKIFTFPIKD---IHDVLEVTVYDEDKD-----KKPEFLGKVAIPLLS 88 (119)
T ss_pred eecceecCCcCCccCcEEEEEecC---cCCEEEEEEEECCCC-----CCCceeeEEEEEHHH
Confidence 467788889999999999988763 246888888865321 123579999999854
No 77
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=56.95 E-value=24 Score=33.99 Aligned_cols=53 Identities=19% Similarity=0.265 Sum_probs=39.1
Q ss_pred EEEEEEEc-CCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.+..+ +.+|.|+|++.+.++.. ....|.|+.|+-+- . . ...+|.+-++|-
T Consensus 35 ~kT~~~~~~~~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~---~--~-~~~iG~~~~~l~ 88 (118)
T cd08681 35 KKTKTDFRGGQHPEWDEELRFEITED--KKPILKVAVFDDDK---R--K-PDLIGDTEVDLS 88 (118)
T ss_pred cccccccCCCCCCccCceEEEEecCC--CCCEEEEEEEeCCC---C--C-CcceEEEEEecH
Confidence 34666655 57999999999998875 45689999998522 1 1 357999999875
No 78
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=56.81 E-value=33 Score=33.72 Aligned_cols=53 Identities=19% Similarity=0.380 Sum_probs=40.6
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|..++.+|.|+|++-+.+|-. .-+|.|+.+|-+-- .....+|.+-+||-
T Consensus 36 ~kT~v~~kt~~P~WnE~F~f~v~~~---~~~l~~~v~d~~~~-----~~~~~iG~~~i~l~ 88 (121)
T cd08401 36 FRTKTVEKSLCPFFGEDFYFEIPRT---FRHLSFYIYDRDVL-----RRDSVIGKVAIKKE 88 (121)
T ss_pred EEeeEEECCCCCccCCeEEEEcCCC---CCEEEEEEEECCCC-----CCCceEEEEEEEHH
Confidence 5688888999999999999999843 35899998876421 12357999988864
No 79
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=56.63 E-value=28 Score=35.77 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|..++.+|.|+|++...++ + .++-|.|+.+|- .... .....+|-+-+||-
T Consensus 67 ~k~KT~v~kktlnPvfNE~F~f~v~--l-~~~~L~v~V~~d-~~~~---~~~~~iG~~~i~L~ 122 (146)
T cd04028 67 AKKKTKIARKTLDPLYQQQLVFDVS--P-TGKTLQVIVWGD-YGRM---DKKVFMGVAQILLD 122 (146)
T ss_pred cceeceecCCCCCCccCCeEEEEEc--C-CCCEEEEEEEeC-CCCC---CCCceEEEEEEEcc
Confidence 4556888899999999999999998 3 566788999962 1111 12246898888874
No 80
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=56.48 E-value=31 Score=33.52 Aligned_cols=54 Identities=15% Similarity=0.139 Sum_probs=40.9
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|...+.+|.|.|++.+.++... ...|.|+.++-+.. .....+|.+-+||-
T Consensus 34 ~kT~v~~~t~nP~Wne~f~f~~~~~~--~~~l~~~v~d~~~~-----~~~~~iG~~~~~l~ 87 (123)
T cd04025 34 LETSVVKKSCYPRWNEVFEFELMEGA--DSPLSVEVWDWDLV-----SKNDFLGKVVFSIQ 87 (123)
T ss_pred EeceeecCCCCCccCcEEEEEcCCCC--CCEEEEEEEECCCC-----CCCcEeEEEEEEHH
Confidence 46778888999999999999988643 56799998875321 12357899999874
No 81
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=56.29 E-value=19 Score=35.03 Aligned_cols=57 Identities=18% Similarity=0.197 Sum_probs=42.2
Q ss_pred EEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..|.|...+.+|.|+|++.+. .|..--....|.|+.++-+-.. ....+|.+-+||-+
T Consensus 53 ~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d~~~-----~~~~iG~~~i~l~~ 110 (125)
T cd08386 53 LETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYDRFS-----RNDPIGEVSLPLNK 110 (125)
T ss_pred eeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCCCCc-----CCcEeeEEEEeccc
Confidence 568888899999999999986 5654444567999998764211 23578999999864
No 82
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=54.84 E-value=34 Score=35.37 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=39.7
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.|..++.+|.|+|++.+.+...- ...+|.|+.++-+-- .....+|.+-+||-
T Consensus 48 ~kT~v~~~t~nPvWNE~f~f~v~~p~-~~~~l~~~v~D~d~~-----~~dd~iG~~~l~l~ 102 (151)
T cd04018 48 VKTSVKKNSYNPEWNEQIVFPEMFPP-LCERIKIQIRDWDRV-----GNDDVIGTHFIDLS 102 (151)
T ss_pred eecceEcCCCCCCcceEEEEEeeCCC-cCCEEEEEEEECCCC-----CCCCEEEEEEEeHH
Confidence 35778889999999999998764321 235888988875321 12357999999975
No 83
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=54.48 E-value=27 Score=34.52 Aligned_cols=52 Identities=12% Similarity=0.170 Sum_probs=38.4
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.+..++.+|.|+|++.+.++ +...|.|+.++-+--. ....+|-+.+||-
T Consensus 49 ~kT~~~~~t~~P~Wne~f~~~v~----~~~~l~~~v~d~~~~~-----~~~~iG~~~i~l~ 100 (132)
T cd04014 49 GKTSTKPKTNSPVWNEEFTTEVH----NGRNLELTVFHDAAIG-----PDDFVANCTISFE 100 (132)
T ss_pred eEEeEcCCCCCCCcceeEEEEcC----CCCEEEEEEEeCCCCC-----CCceEEEEEEEhH
Confidence 35677778899999999998886 5678999988742111 2246898888874
No 84
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=54.19 E-value=22 Score=36.57 Aligned_cols=58 Identities=14% Similarity=0.188 Sum_probs=41.4
Q ss_pred eEEEEEEEcCCCCcccceEEEecCC-------------CCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPA-------------VWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~-------------~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|+|...++. .-.+...|.|+.+|.+-- .....+|-+-+||-.
T Consensus 36 ~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~-----~~ddfLG~v~i~l~~ 106 (148)
T cd04010 36 TKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG-----GGDVFLGEVRIPLRG 106 (148)
T ss_pred ccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC-----CCCceeEEEEEeccc
Confidence 3457788999999999999999852 222346788888875331 123579999999763
No 85
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=53.08 E-value=36 Score=32.69 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=39.9
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|++.+.+.++-. ...+|-|+.++-..- ....+|...+||-
T Consensus 26 ~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~i~v~d~~~~------~d~~iG~~~v~L~ 79 (111)
T cd04052 26 VYTTRVKKKTNNPSWNASTEFLVTDR--RKSRVTVVVKDDRDR------HDPVLGSVSISLN 79 (111)
T ss_pred EEEEeeeccCCCCccCCceEEEecCc--CCCEEEEEEEECCCC------CCCeEEEEEecHH
Confidence 35677888899999999998877632 467899998774321 2357899999874
No 86
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=50.94 E-value=36 Score=35.91 Aligned_cols=53 Identities=19% Similarity=0.248 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 578 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPL 578 (1084)
...|.|.|+|.||+|+||+-..++-. +.+|-.|.|.-+.-...+ .+|=|-+||
T Consensus 39 ~lkT~~v~~n~NPeWNe~ltf~v~d~---~~~lkv~VyD~D~fs~dD-----~mG~A~I~l 91 (168)
T KOG1030|consen 39 KLKTRVVYKNLNPEWNEELTFTVKDP---NTPLKVTVYDKDTFSSDD-----FMGEATIPL 91 (168)
T ss_pred eeeeeeecCCCCCcccceEEEEecCC---CceEEEEEEeCCCCCccc-----ccceeeecc
Confidence 44577999999999999999888743 347999999875543322 256666655
No 87
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=50.75 E-value=22 Score=35.06 Aligned_cols=56 Identities=25% Similarity=0.323 Sum_probs=42.3
Q ss_pred EEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..|.|.-. .+|.|+|++... ++...-.+.-|.|+++|-+-- .....+|-+-+||-.
T Consensus 53 ~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~~~~-----~~~~~lG~~~i~L~~ 109 (124)
T cd08389 53 AKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGVERM-----RKERLIGEKVVPLSQ 109 (124)
T ss_pred eecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEECCCc-----ccCceEEEEEEeccc
Confidence 35666544 899999999998 776666678899999997421 124579999999854
No 88
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=49.66 E-value=33 Score=33.65 Aligned_cols=58 Identities=5% Similarity=0.002 Sum_probs=41.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCC-CCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVW-TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L-~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|..++.+|.|+|++.+.++-.- .....|-|+.|+..... .....+|-..+||-
T Consensus 33 ~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~----~~d~~lG~v~i~l~ 91 (127)
T cd04022 33 KKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSG----RRRSFLGRVRISGT 91 (127)
T ss_pred EecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCc----CCCCeeeEEEEcHH
Confidence 356888888999999999999987432 22468999999853211 02356888888874
No 89
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.45 E-value=6.9e+02 Score=32.12 Aligned_cols=327 Identities=18% Similarity=0.237 Sum_probs=0.0
Q ss_pred hHHHHHHhhhhhccccCCCCChhHHHHHHHhhcCCChhhHHHhHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHhhhccc
Q 001401 634 ERIRDFFLEYDRHTLRTSPPWGSELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMVNILTRVQQE 713 (1084)
Q Consensus 634 ~~L~~ff~~~~~~~~~~~~~~~~eL~~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~~~~~~aF~~Lv~Iv~~v~e~ 713 (1084)
|.+..||+++ +|..-+.-..+++.+--+....+...+-..|..||.+-.+...++..++.++++.++.---+
T Consensus 177 pkfl~f~~h~-------spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d- 248 (885)
T KOG2023|consen 177 PKFLQFFKHP-------SPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPD- 248 (885)
T ss_pred HHHHHHHhCC-------ChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH-
Q ss_pred CcchhccchhhhhhhhccccCCCCCCCCCCCCchhHHHHHHHhhcccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 001401 714 SVDDAERNRFLVNYVDYAFDDFGGRQPPVYPGLSTVWGSLARSKAKGYRVGPVYDDVLAMAWFFLELIVKSMALEQTRLF 793 (1084)
Q Consensus 714 ~~~~~~r~~vL~sYI~y~F~~~~~~~~~~y~~l~~~~~~L~rs~~~~~~~~~~~~~~Lk~sWFfFelIvKSMal~~~~~~ 793 (1084)
+. -+-|..-|+|+..-..+....+--+-|.-|..++.+.- ..+....|.-=+.-+++.+|+-.-...-
T Consensus 249 kl-----~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi-------~~~~L~p~l~kliPvLl~~M~Ysd~D~~ 316 (885)
T KOG2023|consen 249 KL-----VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPI-------CKEVLQPYLDKLIPVLLSGMVYSDDDII 316 (885)
T ss_pred hc-----ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcC-------cHHHHHHHHHHHHHHHHccCccccccHH
Q ss_pred cCCCCCCCCCCCCccchhHHHHHH-----------------------------------------------------HHH
Q 001401 794 FHGLPLGEDIPPMQLRDGVFRCVM-----------------------------------------------------QLY 820 (1084)
Q Consensus 794 ~~~~pr~~rfp~~~f~d~F~~~i~-----------------------------------------------------~Lv 820 (1084)
.++ ...++-. .+|+ -+||+ +++
T Consensus 317 LL~-~~eeD~~---vpDr-eeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL 391 (885)
T KOG2023|consen 317 LLK-NNEEDES---VPDR-EEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL 391 (885)
T ss_pred Hhc-Ccccccc---CCch-hhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH
Q ss_pred HHHHHHHHhh-hccchHHHHHHHhhHHHHHHhhhcccChhHHHHHHHHHHhhccCCCcc-------hhhHhHHHHHHHHh
Q 001401 821 DCLLTEVHER-CKKGLSLAKRLNSSLGFFCYDLLSIIEPRQVFELVSLYLDKFSGVCQS-------VLHDCKLIFLQIVC 892 (1084)
Q Consensus 821 ~~l~~~I~~r-~~k~~~~a~~lN~slA~FlrdLlsimDRgfVf~LI~~Y~~~~~~~~~~-------~L~~~KldFLriIc 892 (1084)
..+.+.+... .++.-...+.....|+..-..|+..|-.+-- .||-..+..++.+.+- +|-
T Consensus 392 ~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~Lp-eLip~l~~~L~DKkplVRsITCWTLs----------- 459 (885)
T KOG2023|consen 392 PILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLP-ELIPFLLSLLDDKKPLVRSITCWTLS----------- 459 (885)
T ss_pred HHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchH-HHHHHHHHHhccCccceeeeeeeeHh-----------
Q ss_pred cCccccccCCCCCCCccccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHH
Q 001401 893 DHDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQIL 972 (1084)
Q Consensus 893 ~hehfv~lp~~~p~~rhFL~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~ill 972 (1084)
.+-+|+. .-....|+..+|-.=+..+|| .+..++..|++.+ +..-+.-+.-..|+++.++
T Consensus 460 Rys~wv~----~~~~~~~f~pvL~~ll~~llD-~NK~VQEAAcsAf---------------AtleE~A~~eLVp~l~~IL 519 (885)
T KOG2023|consen 460 RYSKWVV----QDSRDEYFKPVLEGLLRRLLD-SNKKVQEAACSAF---------------ATLEEEAGEELVPYLEYIL 519 (885)
T ss_pred hhhhhHh----cCChHhhhHHHHHHHHHHHhc-ccHHHHHHHHHHH---------------HHHHHhccchhHHHHHHHH
Q ss_pred hhcccccc------------------------CChhhHhhHHHHHHHHHHhCChHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 001401 973 DEMPVFYN------------------------LNAVEKREVLIVVMEIVRNLDDASLVKAWQQSIARTRLFFKLMEECLI 1028 (1084)
Q Consensus 973 d~~~~l~~------------------------l~~~e~r~LL~CfLwILKnl~~~~ll~~W~~~~~~~~~fl~lL~~cl~ 1028 (1084)
+++-.-.. ++..+--++| |.+ |++.|..-...=..+|-||+ |++
T Consensus 520 ~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~YiqiL---------mPP--Li~KW~~lsd~DKdLfPLLE-ClS 587 (885)
T KOG2023|consen 520 DQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQIL---------MPP--LIEKWELLSDSDKDLFPLLE-CLS 587 (885)
T ss_pred HHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHHh---------ccH--HHHHHHhcCcccchHHHHHH-HHH
Q ss_pred h
Q 001401 1029 L 1029 (1084)
Q Consensus 1029 ~ 1029 (1084)
+
T Consensus 588 s 588 (885)
T KOG2023|consen 588 S 588 (885)
T ss_pred H
No 90
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=48.57 E-value=42 Score=34.20 Aligned_cols=57 Identities=5% Similarity=0.051 Sum_probs=38.7
Q ss_pred eeEEEEEEEcC-CCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGA-RMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHn-k~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+...|.|...+ .+|.|+|+|-..+|.++. +-.|.++.|+-+.-.+ ...||--.|+.-
T Consensus 51 ~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~-~v~l~v~v~d~~~~~~-----n~~IG~v~lG~~ 108 (135)
T cd08692 51 YKKKTRLVKSSNGQVKWGETMIFPVTQQEH-GIQFLIKLYSRSSVRR-----KHFLGQVWISSD 108 (135)
T ss_pred eeecCccEECCCCCceecceEEEeCCchhh-eeEEEEEEEeCCCCcC-----CceEEEEEECCc
Confidence 34457788877 469999999999998764 4577777776543111 235777666653
No 91
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=48.00 E-value=39 Score=34.98 Aligned_cols=51 Identities=16% Similarity=0.284 Sum_probs=40.4
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|...+.+|.|.|++.+.++.. ....|.|+.|+-+ ...+|.+.+||-
T Consensus 90 ~~kT~v~~~tlnP~WnE~F~f~v~~~--~~~~L~i~V~D~d---------d~~IG~v~i~l~ 140 (153)
T cd08676 90 IKVTEVKPQTLNPVWNETFRFEVEDV--SNDQLHLDIWDHD---------DDFLGCVNIPLK 140 (153)
T ss_pred cEecceecCCCCCccccEEEEEeccC--CCCEEEEEEEecC---------CCeEEEEEEEHH
Confidence 45678888899999999999987532 4568999999764 246899999874
No 92
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=47.42 E-value=40 Score=33.15 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=41.1
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|.-++.+|.|.+++.+.++... ...+|.|+.|+-+.. .....+|-+-+||-
T Consensus 51 ~~rT~v~~~~~~P~wne~f~~~~~~~~-~~~~l~v~v~d~~~~-----~~~~~iG~~~~~l~ 106 (131)
T cd04026 51 KQKTKTIKKTLNPVWNETFTFDLKPAD-KDRRLSIEVWDWDRT-----TRNDFMGSLSFGVS 106 (131)
T ss_pred eecceeecCCCCCCccceEEEeCCchh-cCCEEEEEEEECCCC-----CCcceeEEEEEeHH
Confidence 356778888999999999999987543 346899999875321 12357888888864
No 93
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=47.36 E-value=52 Score=32.09 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=38.7
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPL 578 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPL 578 (1084)
+.|.|...+.+|.|+|++.+.++. ...+|.|+.++-+-- .....+|.+.+++
T Consensus 35 ~kT~v~~~t~nP~Wne~f~~~~~~---~~~~l~v~v~d~~~~-----~~d~~iG~~~~~~ 86 (121)
T cd04054 35 IRTATVWKTLNPFWGEEYTVHLPP---GFHTVSFYVLDEDTL-----SRDDVIGKVSLTR 86 (121)
T ss_pred eeeeeEcCCCCCcccceEEEeeCC---CCCEEEEEEEECCCC-----CCCCEEEEEEEcH
Confidence 467788889999999999998863 236899988875321 1235689988885
No 94
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=47.25 E-value=29 Score=35.26 Aligned_cols=60 Identities=17% Similarity=0.190 Sum_probs=46.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
...|.|..++.+|.|+|.+...+|...-+..-|.|+.++-+.-. ....+|=.-|++...|
T Consensus 55 kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~d~d~~~-----~~d~iG~v~lg~~~~g 114 (138)
T cd08407 55 KKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVLNQDSPG-----QSLPLGRCSLGLHTSG 114 (138)
T ss_pred eeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEEeCCCCc-----CcceeceEEecCcCCC
Confidence 44688999999999999999999977666667999999875422 1246888888876544
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=46.60 E-value=1.4e+02 Score=28.31 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=39.9
Q ss_pred eeEEEEEEEcCCCCcccceEEEecC-CCCC-CCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLP-AVWT-PMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP-~~L~-~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|...+.+|.|. |+.+.+. ..-. ...+|.|+.++-+... ....+|.+-+||-
T Consensus 38 ~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~~-----~d~~iG~~~~~l~ 96 (110)
T cd04047 38 LVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSSG-----KHDLIGEFETTLD 96 (110)
T ss_pred EEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCCC-----CCcEEEEEEEEHH
Confidence 45788899999999999 7665542 1111 2579999999764321 2357999999874
No 96
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=45.67 E-value=36 Score=33.42 Aligned_cols=53 Identities=15% Similarity=0.100 Sum_probs=39.1
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.|...+.+|.|+|++-+.+.. ....+|-|+.|+-+-. ....+|-+.+||-
T Consensus 30 ~kT~v~~~t~nP~Wne~F~f~~~~--~~~~~L~~~v~d~d~~------~~~~lG~~~i~l~ 82 (121)
T cd08378 30 GSTKAIERTSNPEWNQVFAFSKDR--LQGSTLEVSVWDKDKA------KDDFLGGVCFDLS 82 (121)
T ss_pred ccccccCCCCCCccceEEEEEcCC--CcCCEEEEEEEeCCCC------cCceeeeEEEEhH
Confidence 457788888999999999988643 2567899999986421 2346788887764
No 97
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=44.77 E-value=40 Score=31.91 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=38.4
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|..++.+|.|+|++.+.++.. ....|-|+.++-.- ...+|.+.+||-
T Consensus 32 ~~~kT~v~~~t~nP~Wne~f~f~v~~~--~~~~l~v~v~d~~~--------~~~iG~~~i~l~ 84 (105)
T cd04050 32 TTQKSKVKERTNNPVWEEGFTFLVRNP--ENQELEIEVKDDKT--------GKSLGSLTLPLS 84 (105)
T ss_pred EEEeCccccCCCCCcccceEEEEeCCC--CCCEEEEEEEECCC--------CCccEEEEEEHH
Confidence 345677888899999999999998753 24578887776421 245888888874
No 98
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=44.40 E-value=65 Score=31.67 Aligned_cols=54 Identities=11% Similarity=0.099 Sum_probs=39.2
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.+..++.+|.|+|++-+.+ .......|.|+.++-+.- .....+|.+.++|-
T Consensus 36 ~kT~~v~~t~nP~Wne~f~f~~--~~~~~~~L~~~V~d~d~~-----~~dd~iG~~~i~l~ 89 (124)
T cd04037 36 DRDNYIPNTLNPVFGKMFELEA--TLPGNSILKISVMDYDLL-----GSDDLIGETVIDLE 89 (124)
T ss_pred ceeeEEECCCCCccceEEEEEe--cCCCCCEEEEEEEECCCC-----CCCceeEEEEEeec
Confidence 3466777889999999988764 334567899999986321 12357999999985
No 99
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=43.94 E-value=57 Score=32.12 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=40.6
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeeccccc------CCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKL------EAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~------~~~~e~~vGyAwLPLl~ 580 (1084)
..|.+...+.+|.|+|++-+.+.. +..+|.|++|+-+...+. .......+|.+.+||-.
T Consensus 35 ~kT~~v~~t~~P~Wne~f~f~~~~---~~~~l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~ 99 (127)
T cd04027 35 KRTKTIPQNLNPVWNEKFHFECHN---SSDRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRT 99 (127)
T ss_pred eecceecCCCCCccceEEEEEecC---CCCEEEEEEEECCCCcccccceeccccCCCcceEEEEEhHH
Confidence 467777888999999999887642 245899999986542110 00124578998888753
No 100
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=43.26 E-value=59 Score=31.14 Aligned_cols=54 Identities=17% Similarity=0.211 Sum_probs=39.7
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.++.. ...+|-|+.|+-+.. ....+|.+-++|-
T Consensus 40 ~~kT~~~~~t~~P~W~e~f~~~v~~~--~~~~l~i~v~d~~~~------~~~~iG~~~i~l~ 93 (121)
T cd08391 40 TFKSKVIKENLNPKWNEVYEAVVDEV--PGQELEIELFDEDPD------KDDFLGRLSIDLG 93 (121)
T ss_pred eEEccccCCCCCCcccceEEEEeCCC--CCCEEEEEEEecCCC------CCCcEEEEEEEHH
Confidence 45677888899999999998776532 456899998875432 2246888888863
No 101
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=42.09 E-value=87 Score=30.76 Aligned_cols=54 Identities=13% Similarity=0.149 Sum_probs=41.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+...- ...+|.|+.|+-+- . ....+|.+-+++-.
T Consensus 36 ~~kT~v~~~t~nP~Wne~f~f~~~~---~~~~l~i~V~d~~~---~---~d~~lG~~~~~l~~ 89 (126)
T cd04046 36 SVRSPVQKDTLSPEFDTQAIFYRKK---PRSPIKIQVWNSNL---L---CDEFLGQATLSADP 89 (126)
T ss_pred EEEeCccCCCCCCcccceEEEEecC---CCCEEEEEEEECCC---C---CCCceEEEEEeccc
Confidence 4678899999999999999886642 35689999998531 1 13579999999854
No 102
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=38.10 E-value=78 Score=31.97 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=37.1
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|.- ..+|.|+||+...+.- .+.+|.+.++.-+. -....+|.+++||-
T Consensus 32 k~kT~v~~-~~nP~WnE~F~F~~~~---~~~~L~v~V~dkd~------~~DD~lG~v~i~L~ 83 (127)
T cd08394 32 KSTTIAVR-GSQPCWEQDFMFEINR---LDLGLVIELWNKGL------IWDTLVGTVWIPLS 83 (127)
T ss_pred EeEeeECC-CCCCceeeEEEEEEcC---CCCEEEEEEEeCCC------cCCCceEEEEEEhH
Confidence 34566654 4699999999999853 44459998887431 12357999999985
No 103
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=37.52 E-value=94 Score=30.18 Aligned_cols=56 Identities=20% Similarity=0.227 Sum_probs=39.5
Q ss_pred EEEEEEEc-CCCCcccceEEEecCCCCC-CCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVG-ARMAYYHDEIKVSLPAVWT-PMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yH-nk~P~F~DEIKI~LP~~L~-~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.|... +.+|.|+|++-+.++..-. ..-+|.|..|+-.-. .....+|.+.+||-
T Consensus 35 ~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~-----~~d~~iG~~~i~l~ 92 (124)
T cd04049 35 RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNF-----SDDDFIGEATIHLK 92 (124)
T ss_pred eeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccC-----CCCCeEEEEEEEhH
Confidence 45666653 6899999999998886532 345899988875321 12357999999963
No 104
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=37.30 E-value=3.7e+02 Score=31.19 Aligned_cols=150 Identities=14% Similarity=0.188 Sum_probs=82.8
Q ss_pred HHHHHHhhHHHHHHhhhcccChhHHHHHHHHH----HhhccCCC--cchhhHhHHHHHHHHhcC--ccccccCCCCCCCc
Q 001401 837 LAKRLNSSLGFFCYDLLSIIEPRQVFELVSLY----LDKFSGVC--QSVLHDCKLIFLQIVCDH--DLYVEMPGRDPSDR 908 (1084)
Q Consensus 837 ~a~~lN~slA~FlrdLlsimDRgfVf~LI~~Y----~~~~~~~~--~~~L~~~KldFLriIc~h--ehfv~lp~~~p~~r 908 (1084)
..+.+| -+|..++.+-..+.. .|-.++..- +..+.... ...+..-=+.+|+-++.| +-+..+|. +
T Consensus 89 ~~evL~-l~~~ii~kl~~~~~~-~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~----~- 161 (319)
T PF08767_consen 89 EPEVLS-LMATIINKLGELIQP-QVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPP----E- 161 (319)
T ss_dssp -HHHHH-HHHHHHHHHGGGCCC-CHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-H----H-
T ss_pred ChhHHH-HHHHHHHHHHHhhhh-hHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCH----H-
Confidence 333444 356667766665542 222222222 22222211 112222223566666654 23333331 1
Q ss_pred cccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHHhhc-cccccCChhhHh
Q 001401 909 NYLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEM-PVFYNLNAVEKR 987 (1084)
Q Consensus 909 hFL~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~illd~~-~~l~~l~~~e~r 987 (1084)
.-.+++.-+.-++.+..+++...++.+|.+++.+... -.....++-..+-|++++.-++.-+ +..|...-....
T Consensus 162 --~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~---~~~~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~ 236 (319)
T PF08767_consen 162 --QFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK---TNPEFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQS 236 (319)
T ss_dssp --HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH----SHHHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHH
T ss_pred --HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence 2345667777788888999999999999999999887 2234456666777788777666443 223333345556
Q ss_pred hHHHHHHHHHH
Q 001401 988 EVLIVVMEIVR 998 (1084)
Q Consensus 988 ~LL~CfLwILK 998 (1084)
.+|..++.+..
T Consensus 237 ~iL~~Lf~~ve 247 (319)
T PF08767_consen 237 QILSNLFRLVE 247 (319)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 67777776654
No 105
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=37.22 E-value=83 Score=30.48 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=40.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|++++.+.++. ....+|.|+.|+-+... ....+|-+-++|-
T Consensus 36 ~~kT~~~~~t~~P~Wne~f~~~~~~--~~~~~l~i~v~d~~~~~-----~~~~lG~~~i~l~ 90 (128)
T cd04024 36 RFKTQTIPNTLNPKWNYWCEFPIFS--AQNQLLKLILWDKDRFA-----GKDYLGEFDIALE 90 (128)
T ss_pred EEecceecCCcCCccCCcEEEEecC--CCCCEEEEEEEECCCCC-----CCCcceEEEEEHH
Confidence 3567788889999999999887764 34568999988754211 2246888888863
No 106
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=36.13 E-value=86 Score=30.68 Aligned_cols=54 Identities=9% Similarity=0.117 Sum_probs=38.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.+.-++.+|.|++++-+.++.. ...|.|+.++-+-.. ....+|.+-+||-
T Consensus 35 ~~kT~~~~~t~~P~Wne~f~~~v~~~---~~~L~v~v~d~~~~~-----~d~~IG~~~~~l~ 88 (120)
T cd04045 35 KGRTVTISNTLNPVWDEVLYVPVTSP---NQKITLEVMDYEKVG-----KDRSLGSVEINVS 88 (120)
T ss_pred eeceeEECCCcCCccCceEEEEecCC---CCEEEEEEEECCCCC-----CCCeeeEEEEeHH
Confidence 34566777789999999998766542 358999988753211 2357999999864
No 107
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=35.66 E-value=65 Score=30.77 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=39.7
Q ss_pred eEEEEEEEcCCCCcccceEEEec--CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSL--PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~L--P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.+..++.+|.|+|++.+.+ |..--.+.+|-|+.++-..-. ....+|-+-+||-
T Consensus 33 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~-----~~~~iG~~~i~l~ 91 (111)
T cd04011 33 KKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR-----SDTLIGSFKLDVG 91 (111)
T ss_pred eeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc-----cCCccEEEEECCc
Confidence 34688888889999999997764 433233568999999853211 1356888888874
No 108
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=35.27 E-value=1.2e+02 Score=30.87 Aligned_cols=56 Identities=7% Similarity=0.034 Sum_probs=40.7
Q ss_pred eEEEEEEEcCCCCcc-cceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYY-HDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F-~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|...+.+|.| +|++...++. +.+|.|+.|+-....+ ......+|..-+||-
T Consensus 46 ~~kT~v~~~tlnP~W~nE~f~f~v~~----~~~L~v~V~D~~~~~~--~~~~d~lG~~~i~l~ 102 (137)
T cd08691 46 ECRTSIVENTINPVWHREQFVFVGLP----TDVLEIEVKDKFAKSR--PIIRRFLGKLSIPVQ 102 (137)
T ss_pred eeeeeeEcCCCCCceEceEEEEEcCC----CCEEEEEEEecCCCCC--ccCCceEEEEEEEHH
Confidence 567888888899999 9999998863 3589999987422111 111367999999874
No 109
>PLN03008 Phospholipase D delta
Probab=34.12 E-value=67 Score=41.72 Aligned_cols=37 Identities=19% Similarity=0.313 Sum_probs=30.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEe
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHV 557 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHv 557 (1084)
.+.|.|..++.||.|+|++.+.++- ...+|.|++|.-
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~vah---~~s~L~f~VkD~ 126 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISIAH---PFAYLEFQVKDD 126 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEecC---CCceEEEEEEcC
Confidence 4468888889999999999999874 345899999873
No 110
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=34.03 E-value=2.8e+02 Score=39.55 Aligned_cols=110 Identities=12% Similarity=0.103 Sum_probs=62.6
Q ss_pred HHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHHhhccccc-----------cCC
Q 001401 914 VLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDEMPVFY-----------NLN 982 (1084)
Q Consensus 914 lLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~illd~~~~l~-----------~l~ 982 (1084)
.||..+..+...+..+||..|+.+|-.+|..|+-+ +...-=..-.-.+-||++..+-..+.... +-+
T Consensus 1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~--Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~ 1424 (1780)
T PLN03076 1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL--FSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQG 1424 (1780)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccccc
Confidence 34555544443467899999999999999887544 32222223334578898887653322111 001
Q ss_pred hhhHhhHH-HHHHHHHHhCChHHHHHHHHHhhh-hHHHHHHHHHHHH
Q 001401 983 AVEKREVL-IVVMEIVRNLDDASLVKAWQQSIA-RTRLFFKLMEECL 1027 (1084)
Q Consensus 983 ~~e~r~LL-~CfLwILKnl~~~~ll~~W~~~~~-~~~~fl~lL~~cl 1027 (1084)
..+...|+ -.+...|+++-+ |......... -+..||+||..|+
T Consensus 1425 ~~e~~~Wl~eT~~~AL~~lvd--Lft~fFd~L~~~L~~~l~ll~~ci 1469 (1780)
T PLN03076 1425 ELDQDAWLYETCTLALQLVVD--LFVKFYPTVNPLLKKVLMLLVSFI 1469 (1780)
T ss_pred chhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22445554 666777777764 3333433333 2445666666654
No 111
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=30.50 E-value=1.6e+02 Score=28.00 Aligned_cols=39 Identities=15% Similarity=0.078 Sum_probs=28.8
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEe
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHV 557 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHv 557 (1084)
.+.|.+.-+ .+|.|+|++.+.+|........|-|..++-
T Consensus 31 ~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~ 69 (117)
T cd08383 31 VARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDK 69 (117)
T ss_pred eEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEec
Confidence 356777778 999999999999986544455666665553
No 112
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.77 E-value=81 Score=30.21 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=33.0
Q ss_pred HHHHHHhhcCCChhhHHHhHHHHHHHHHHHHhcCCcchhHHH
Q 001401 658 LLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAA 699 (1084)
Q Consensus 658 L~~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~~~~~~a 699 (1084)
-+++|-++.++-..+++.+++.|++.|+.++.+..+.+...|
T Consensus 47 AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a 88 (97)
T PF12755_consen 47 ACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA 88 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH
Confidence 356677777777789999999999999999988766665544
No 113
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=28.72 E-value=1.3e+02 Score=30.17 Aligned_cols=58 Identities=14% Similarity=0.214 Sum_probs=41.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCC-------------CCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVW-------------TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L-------------~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|++.+.++..- -.+.-|.|+.|+-+-. .....+|-+.+||-.
T Consensus 35 ~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~-----~~~~~IG~~~i~l~~ 105 (137)
T cd08675 35 TKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV-----SGDDFLGEVRIPLQG 105 (137)
T ss_pred eeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEEEEEEEcCCcC-----cCCcEEEEEEEehhh
Confidence 356778888999999999999887642 1456788887765321 124678999998653
No 114
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=28.20 E-value=74 Score=33.07 Aligned_cols=57 Identities=14% Similarity=0.025 Sum_probs=40.6
Q ss_pred eEEEEEEEcCCCCcccceEEEec-CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++.+.+ +..-.....|.|+.|+-+.-. ....+|-+.++|-
T Consensus 65 ~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~V~d~d~~~-----~d~~lG~v~i~l~ 122 (162)
T cd04020 65 KQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELTVWDHDKLS-----SNDFLGGVRLGLG 122 (162)
T ss_pred ceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEEEEeCCCCC-----CCceEEEEEEeCC
Confidence 35688999999999999999874 332224457999999854311 2357898888874
No 115
>PLN02952 phosphoinositide phospholipase C
Probab=26.75 E-value=86 Score=39.51 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=27.5
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEe
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHV 557 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHv 557 (1084)
....|.|..+|-+|.|.||+...+. ..+-.-|.|+.+.-
T Consensus 513 ~~~kTkvi~nN~nPvWnE~F~F~i~--~PELAllrf~V~D~ 551 (599)
T PLN02952 513 AKKKTKIIEDNWYPAWNEEFSFPLT--VPELALLRIEVREY 551 (599)
T ss_pred cceeeeeccCCCCcccCCeeEEEEE--cCCccEEEEEEEec
Confidence 3446778888899999999876444 34445677777764
No 116
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=26.25 E-value=1.4e+02 Score=24.75 Aligned_cols=45 Identities=22% Similarity=0.271 Sum_probs=34.8
Q ss_pred HHHHhhcCCChhhHHHhHHHHHHHHHHHHhcCCcchhHHHHHHHH
Q 001401 660 EAINSLKNVDSTALLQFLHPVLNMLLHLIGNGGETLQVAAFRAMV 704 (1084)
Q Consensus 660 ~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~~~~~~~~aF~~Lv 704 (1084)
..|..+.......+-.+++.++..|+.+|.+....+...|..+|-
T Consensus 9 ~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 9 WALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred HHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 345556667778899999999999999998776677667776664
No 117
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=26.18 E-value=1.7e+02 Score=30.02 Aligned_cols=56 Identities=16% Similarity=0.183 Sum_probs=37.9
Q ss_pred eEEEEEEEc-CCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVG-ARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yH-nk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.+.-. +.+|.|+|++.+.++... ..+|.|++++-.-- .....+|.+-+||-.
T Consensus 33 ~~kTk~~~~~t~nP~WNE~F~f~v~~~~--~~~l~v~V~d~~~~-----~~dd~lG~v~i~L~~ 89 (150)
T cd04019 33 VLRTRPSQTRNGNPSWNEELMFVAAEPF--EDHLILSVEDRVGP-----NKDEPLGRAVIPLND 89 (150)
T ss_pred EeeeEeccCCCCCCcccCcEEEEecCcc--CCeEEEEEEEecCC-----CCCCeEEEEEEEHHH
Confidence 344555544 589999999999876432 35898998864321 123579999999753
No 118
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=24.64 E-value=1.8e+02 Score=30.64 Aligned_cols=96 Identities=17% Similarity=0.241 Sum_probs=56.0
Q ss_pred hhHHHHHHhhhcccChhHHH---------HHHHHHHhhccCCCcchhhHhHHHHHHHHhcCc--cccccCCCCCCCcccc
Q 001401 843 SSLGFFCYDLLSIIEPRQVF---------ELVSLYLDKFSGVCQSVLHDCKLIFLQIVCDHD--LYVEMPGRDPSDRNYL 911 (1084)
Q Consensus 843 ~slA~FlrdLlsimDRgfVf---------~LI~~Y~~~~~~~~~~~L~~~KldFLriIc~he--hfv~lp~~~p~~rhFL 911 (1084)
..||+.|.-+..+||.|.|. +=|..|++. +..++..+ +.=+..|.-++... .|-.. .+.--
T Consensus 32 ~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~-~~~d~~i~-q~sLaILEs~Vl~S~~ly~~V------~~evt 103 (160)
T PF11841_consen 32 EILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNS-SAMDASIL-QRSLAILESIVLNSPKLYQLV------EQEVT 103 (160)
T ss_pred HHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHcc-ccccchHH-HHHHHHHHHHHhCCHHHHHHH------hccCC
Confidence 34788888888899988632 224455552 22344333 33344555444332 23221 12222
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCcc
Q 001401 912 SSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDAR 950 (1084)
Q Consensus 912 ~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~R 950 (1084)
.+-| ..+|+..+++++..|+..+..|+.|-+-+.|
T Consensus 104 ~~~L----i~hLq~~~~~iq~naiaLinAL~~kA~~~~r 138 (160)
T PF11841_consen 104 LESL----IRHLQVSNQEIQTNAIALINALFLKADDSKR 138 (160)
T ss_pred HHHH----HHHHHcCCHHHHHHHHHHHHHHHhcCChHHH
Confidence 3333 3455556789999999999999998876654
No 119
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=23.78 E-value=77 Score=45.23 Aligned_cols=61 Identities=13% Similarity=0.185 Sum_probs=42.4
Q ss_pred EEEEEEcCCCCcccceEE--EecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc---CCcccceee
Q 001401 520 HTQVAVGARMAYYHDEIK--VSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST---HAQLRSEIS 589 (1084)
Q Consensus 520 ~SsV~yHnk~P~F~DEIK--I~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~---~g~l~~e~~ 589 (1084)
.|-|..+|.||.|+||+- ++-|. .+..|.|+.|.-+.-. ++ .+|++-++|-+ +|++...|+
T Consensus 2014 kTkvvk~~~nP~Wne~f~~~~~~p~---~~~~l~iev~d~d~f~-----kd-~~G~~~i~l~~vv~~~~~~~~~~ 2079 (2102)
T PLN03200 2014 QTKVVSHSSSPEWKEGFTWAFDSPP---KGQKLHISCKSKNTFG-----KS-SLGKVTIQIDRVVMEGTYSGEYS 2079 (2102)
T ss_pred cccccCCCCCCCcccceeeeecCCC---CCCceEEEEEecCccC-----CC-CCceEEEEHHHHhcCceeeeeee
Confidence 578999999999999999 66663 3345888887754321 22 59999999853 444444443
No 120
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=21.79 E-value=1.1e+03 Score=26.75 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=60.2
Q ss_pred cccChhHHHHHHHHHHhhccCCCcchhhHhHHHHHHHHhc--CccccccCCCCCCCccccHHHHHHHHHHhccCCCHHHH
Q 001401 854 SIIEPRQVFELVSLYLDKFSGVCQSVLHDCKLIFLQIVCD--HDLYVEMPGRDPSDRNYLSSVLIQEVFLTWDHDDLSQR 931 (1084)
Q Consensus 854 simDRgfVf~LI~~Y~~~~~~~~~~~L~~~KldFLriIc~--hehfv~lp~~~p~~rhFL~glLl~el~~~L~~~~~~lr 931 (1084)
.--+.+-+.++...|-+. .. .=+-+|++.+|. +|+|.| . ....++.-+...|+.+...+|
T Consensus 144 ~~~~~~~La~il~~ya~~----~f----r~~~dfl~~v~~~l~~~f~P------~----~~~~~l~~Ll~lL~n~~~w~~ 205 (262)
T PF14225_consen 144 EAQGLPNLARILSSYAKG----RF----RDKDDFLSQVVSYLREAFFP------D----HEFQILTFLLGLLENGPPWLR 205 (262)
T ss_pred HhCCCccHHHHHHHHHhc----CC----CCHHHHHHHHHHHHHHHhCc------h----hHHHHHHHHHHHHhCCcHHHH
Confidence 333444566666667653 11 224478888887 377765 1 111223334555566778999
Q ss_pred HHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHH
Q 001401 932 AKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQIL 972 (1084)
Q Consensus 932 ~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~ill 972 (1084)
.+++.+|+.++.--|+..- ..+.++-|+++.+-
T Consensus 206 ~~~L~iL~~ll~~~d~~~~--------~~~dlispllrlL~ 238 (262)
T PF14225_consen 206 RKTLQILKVLLPHVDMRSP--------HGADLISPLLRLLQ 238 (262)
T ss_pred HHHHHHHHHHhccccCCCC--------cchHHHHHHHHHhC
Confidence 9999999999998887732 66778888888764
No 121
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=21.65 E-value=2.3e+02 Score=28.34 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=40.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeeccc-ccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQT-KLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~-K~~~~~e~~vGyAwLPLl 579 (1084)
.+.|.|..++.+|.|+|++-+.+.- ....|-|+.|.-+--. |..-.....+|-+-+||-
T Consensus 36 ~~rTk~~~~~~nP~WnE~f~f~v~~---~~~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~ 95 (126)
T cd08379 36 WVRTRTVEDSSNPRWNEQYTWPVYD---PCTVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLS 95 (126)
T ss_pred EeEcCcccCCCCCcceeEEEEEecC---CCCEEEEEEEECCCccccccCCCCceEEEEEEEHH
Confidence 4578888889999999999998753 2337899888743210 001113467899999864
No 122
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=21.13 E-value=1.8e+02 Score=21.53 Aligned_cols=27 Identities=15% Similarity=0.120 Sum_probs=20.1
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHHHHH
Q 001401 916 IQEVFLTWDHDDLSQRAKAARILVVLL 942 (1084)
Q Consensus 916 l~el~~~L~~~~~~lr~~Ai~~L~~LL 942 (1084)
+.-+...+..+++++|..|+..|.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 344556676778999999999998764
Done!