Query 001401
Match_columns 1084
No_of_seqs 247 out of 439
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 02:12:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001401.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001401hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l4c_A Dedicator of cytokinesi 100.0 2.2E-39 7.6E-44 340.8 13.7 172 459-636 19-220 (220)
2 1wfm_A Synaptotagmin XIII; C2 86.3 2 6.9E-05 41.3 8.3 58 518-580 60-117 (138)
3 3f04_A Synaptotagmin-1; C2A, c 79.6 2.5 8.6E-05 40.6 6.0 57 518-579 70-126 (143)
4 3n5a_A Synaptotagmin-7; calciu 76.4 5.2 0.00018 37.8 7.1 59 517-580 53-111 (138)
5 2chd_A Rabphilin-3A, exophilin 73.4 5.8 0.0002 37.9 6.6 59 517-580 66-125 (142)
6 1w15_A Synaptotagmin IV; metal 70.8 4.6 0.00016 39.3 5.3 58 518-580 68-125 (153)
7 1ugk_A Synaptotagmin IV, KIAA1 69.7 3.7 0.00013 39.2 4.2 59 517-580 58-117 (138)
8 1rlw_A Phospholipase A2, CALB 66.8 5.9 0.0002 36.9 4.9 55 517-579 41-95 (126)
9 3b7y_A E3 ubiquitin-protein li 66.5 7.1 0.00024 37.8 5.6 55 517-579 58-112 (153)
10 1rsy_A Synaptotagmin I; calciu 66.2 2.4 8.4E-05 41.3 2.2 57 519-580 79-135 (152)
11 3fdw_A Synaptotagmin-like prot 65.3 5.2 0.00018 38.6 4.4 58 517-579 61-118 (148)
12 2q3x_A Regulating synaptic mem 65.1 6.4 0.00022 39.3 5.1 56 517-580 68-124 (171)
13 2dmh_A Myoferlin; beta-sandwic 65.0 6.4 0.00022 37.4 4.9 58 518-580 39-97 (140)
14 1tjx_A Similar to synaptotagmi 65.0 4.6 0.00016 39.6 3.9 59 517-580 62-120 (159)
15 3kwu_A MUNC13-1; calcium bindi 63.6 9 0.00031 36.8 5.7 60 518-580 50-115 (148)
16 2bwq_A Regulating synaptic mem 62.9 4.5 0.00016 37.9 3.3 61 517-580 55-116 (129)
17 2d8k_A Synaptotagmin VII; exoc 61.8 4.2 0.00014 38.9 2.9 58 518-580 62-120 (141)
18 2cm5_A Rabphilin-3A; protein t 60.7 6 0.00021 39.1 3.9 59 517-580 74-132 (166)
19 3fbk_A RGS3, RGP3, regulator o 59.8 6.1 0.00021 38.5 3.7 58 517-579 63-120 (153)
20 1v27_A Regulating synaptic mem 59.2 6.1 0.00021 37.5 3.6 60 518-580 59-119 (141)
21 2dmg_A KIAA1228 protein; beta- 59.1 2.4 8.2E-05 40.7 0.6 61 517-580 60-120 (142)
22 1wfj_A Putative elicitor-respo 56.9 5.7 0.0002 37.6 2.9 53 519-579 44-97 (136)
23 2enp_A B/K protein; C2 type 1, 56.6 2.6 9E-05 40.7 0.4 58 518-580 69-126 (147)
24 2ep6_A MCTP2 protein; beta san 56.6 7.1 0.00024 36.9 3.5 55 518-580 46-100 (133)
25 2b3r_A Phosphatidylinositol-4- 56.5 5.6 0.00019 38.0 2.8 59 517-580 56-115 (134)
26 2z0u_A WW domain-containing pr 56.5 4.1 0.00014 40.3 1.8 58 518-580 82-139 (155)
27 1a25_A CALB, protein kinase C 55.6 8.1 0.00028 37.3 3.8 57 517-579 68-124 (149)
28 3gjx_A Exportin-1; transport, 55.5 2.4E+02 0.0083 36.4 18.3 86 910-1003 804-890 (1073)
29 3m7f_B E3 ubiquitin-protein li 53.6 12 0.00041 37.2 4.8 56 517-580 46-101 (176)
30 2cjt_A UNC-13 homolog A, MUNC1 52.2 17 0.0006 34.6 5.5 51 521-580 36-87 (131)
31 2cjs_A UNC-13 homolog A, MUNC1 52.2 20 0.00068 35.9 6.1 52 520-580 44-96 (167)
32 2qzq_A Axin interactor, dorsal 50.4 65 0.0022 32.1 9.2 106 469-595 15-125 (152)
33 3rdl_A Protein kinase C alpha 50.0 14 0.00047 34.8 4.3 56 518-579 54-109 (137)
34 2fk9_A Protein kinase C, ETA t 49.6 8 0.00027 38.6 2.7 52 519-579 74-125 (157)
35 2r83_A Synaptotagmin-1; C2A-C2 49.4 13 0.00044 39.8 4.5 56 519-579 56-111 (284)
36 1gmi_A Protein kinase C, epsil 48.6 9.6 0.00033 36.2 3.0 51 520-579 53-103 (136)
37 2r83_A Synaptotagmin-1; C2A-C2 45.9 16 0.00056 38.9 4.6 59 517-580 187-245 (284)
38 3pyc_A E3 ubiquitin-protein li 45.0 18 0.00063 33.9 4.3 57 517-579 39-95 (132)
39 2nq3_A Itchy homolog E3 ubiqui 40.6 25 0.00087 35.2 4.8 54 517-579 68-121 (173)
40 2wxf_A Phosphatidylinositol-4, 36.2 41 0.0014 42.8 6.6 69 527-595 262-340 (940)
41 1rh8_A Piccolo protein; beta-s 35.6 5.3 0.00018 38.1 -1.2 56 520-580 67-123 (142)
42 1dqv_A Synaptotagmin III; beta 34.3 23 0.00078 38.4 3.5 55 518-577 56-110 (296)
43 1djx_A PLC-D1, phosphoinositid 31.0 31 0.0011 41.9 4.2 56 517-579 536-592 (624)
44 1dqv_A Synaptotagmin III; beta 24.6 17 0.00059 39.3 0.3 62 516-582 188-249 (296)
45 2x1g_F Cadmus; transport prote 21.5 1.2E+03 0.042 28.7 20.2 55 656-710 561-617 (971)
46 1e7u_A Phosphatidylinositol 3- 21.2 85 0.0029 40.1 5.6 69 527-595 264-346 (961)
No 1
>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}
Probab=100.00 E-value=2.2e-39 Score=340.84 Aligned_cols=172 Identities=20% Similarity=0.253 Sum_probs=129.8
Q ss_pred CCCCcccceeeeEEecccccccC-----ccceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCccc
Q 001401 459 RNEPFLQLFHCLYVYPSSVSLSR-----KRNLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYH 533 (1084)
Q Consensus 459 ~~~P~t~yrN~LYVYP~~lnFsk-----aRNI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~ 533 (1084)
+-.| ++|||+|||||.+++|++ +|||+|+||||++||+ ....|||+++|.+ +.++++|+|+|||++|.|+
T Consensus 19 vI~P-gd~RNdLYVtl~~g~F~~~~k~~aRNIeV~vevr~~~G~---~i~~~I~~~sg~~-~~se~~S~V~YHnk~P~w~ 93 (220)
T 3l4c_A 19 SHMP-GDVRNDIYVTLVQGDFDKGSKTTAKNVEVTVSVYDEDGK---RLEHVIFPGAGDE-AISEYKSVIYYQVKQPRWF 93 (220)
T ss_dssp --------CEEEEEEEEEEECCCSSSSSCCCEEEEEEEEETTSC---BCCSCEECTTCCS-CBSCEECCCCTTCSSCCCC
T ss_pred cccC-CCCcccEEEEeeEeEECCCCCCCcceEEEEEEEEcCCCC---CcccCEEcCCCCC-CceeEEEEEEEcCCCCCce
Confidence 3344 479999999999999975 7999999999998874 2456999987655 6899999999999999999
Q ss_pred ceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccC-Cc-ccc-eeeEEEeecc------Cccccccc
Q 001401 534 DEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTH-AQ-LRS-EISLPIIKEL------VPHYLQET 604 (1084)
Q Consensus 534 DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~-g~-l~~-e~~LpV~~~l------pp~YL~~~ 604 (1084)
|||||+||++++++|||+||||||||++|++ +.|++|||||+|||++ |+ |.+ +|+|+||+.- +..||+..
T Consensus 94 EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~d-k~E~pfg~a~lPL~~~dG~~L~DG~H~L~vyk~d~~~~~~~~~yl~lp 172 (220)
T 3l4c_A 94 ETVKVAIPIEDVNRSHLRFTFRHRSSQDSKD-KSEKIFALAFVKLMRYDGTTLRDGEHDLIVYKAEAKKLEDAATYLSLP 172 (220)
T ss_dssp EEEEEEECTTSSTTEEEEEEEEECCCCSSCC-CCCCEEEEEEEESBCTTSCBCCSEEEEEEEEECCHHHHTCHHHHTTSC
T ss_pred EeEEEeeChhhcCCeEEEEEEEEeccccccc-ccCCeeEEEEEEcccCCCcEEccCCEEEEEEEcccccccchhhhccCC
Confidence 9999999999999999999999999998765 3679999999999976 66 667 9999999942 13587642
Q ss_pred c-------c---c------ccccccCCcCeEEEEEEeecccccCchHH
Q 001401 605 G-------K---E------RLDYLEDGKNAFKLRLRLCSSLYPINERI 636 (1084)
Q Consensus 605 ~-------~---p------~~kwvd~~K~~F~V~t~lvSTv~tQD~~L 636 (1084)
. + + ........|+.|.|+|.+|||++|||..|
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~kd~f~i~t~lCSTkLTQNvdl 220 (220)
T 3l4c_A 173 STKAELEEKGHSATGKSMQSLGSCTISKDSFQISTLVCSTKLTQNVDL 220 (220)
T ss_dssp CBHHHHHTC-------CCCEETTEEEEEEEEEEEEEEC----------
T ss_pred CchhhhccccccccccccccccccCCCcCeEEEEeEEEecccccCCCC
Confidence 0 0 0 01123457999999999999999999865
No 2
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=86.25 E-value=2 Score=41.33 Aligned_cols=58 Identities=19% Similarity=0.151 Sum_probs=45.3
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|++.+.+|..-.....|.|+.|+.+--. ....+|.+.+||-.
T Consensus 60 ~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~dd~lG~~~i~l~~ 117 (138)
T 1wfm_A 60 EAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDRFS-----RHSVAGELRLGLDG 117 (138)
T ss_dssp EEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCSSC-----TTSCSEEEEEESSS
T ss_pred cEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECCCCC-----CCcEEEEEEEEccc
Confidence 45677888899999999999999876656778999999864321 23568999999754
No 3
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Probab=79.64 E-value=2.5 Score=40.58 Aligned_cols=57 Identities=16% Similarity=0.218 Sum_probs=43.6
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|..++.+|.|+|++.+.++..-..+..|.|+.|+.+.-. ....+|.+.+||-
T Consensus 70 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~l~ 126 (143)
T 3f04_A 70 KFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRFS-----KHDIIGEFKVPMN 126 (143)
T ss_dssp CEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSSS-----CCEEEEEEEEEGG
T ss_pred cEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCCCC-----CCceEEEEEEEHH
Confidence 34577888889999999999998865444578999999864321 2368999999985
No 4
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}
Probab=76.42 E-value=5.2 Score=37.80 Aligned_cols=59 Identities=14% Similarity=0.155 Sum_probs=45.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++.+.+|...-.+..|.|+.|+.+.-. ....+|-+.+||-.
T Consensus 53 ~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d~~~~~-----~~~~lG~~~i~l~~ 111 (138)
T 3n5a_A 53 EKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMDKDKLS-----RNDVIGKIYLSWKS 111 (138)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEECCSSS-----CCEEEEEEEESSSS
T ss_pred ceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEECCCCC-----CCcEEEEEEEcccc
Confidence 345677888889999999999998876545578999999864321 23679999999854
No 5
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Probab=73.39 E-value=5.8 Score=37.91 Aligned_cols=59 Identities=12% Similarity=0.102 Sum_probs=43.7
Q ss_pred eeEEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+. +|..-.....|.|+.|+.+.- .....+|.+.+||-.
T Consensus 66 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~-----~~d~~iG~~~i~l~~ 125 (142)
T 2chd_A 66 NKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCDEDKF-----GHNEFIGETRFSLKK 125 (142)
T ss_dssp GEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEEECTT-----SCEEEEEEEEEEGGG
T ss_pred ceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEECCCC-----CCCcEEEEEEEEHHH
Confidence 45678888889999999999987 654332245899999986432 124689999999864
No 6
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Probab=70.81 E-value=4.6 Score=39.25 Aligned_cols=58 Identities=16% Similarity=0.143 Sum_probs=45.8
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|++.+.++........|.|+.|+.+.- .....+|-+.+||-.
T Consensus 68 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~d~~-----~~~~~lG~~~i~l~~ 125 (153)
T 1w15_A 68 KKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDSERG-----SRNEVIGRLVLGATA 125 (153)
T ss_dssp EEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEECCTT-----SCCEEEEEEEESTTC
T ss_pred eEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeCCCC-----CCCcEEEEEEECCCC
Confidence 4567788888999999999999987666678899999986421 123589999999865
No 7
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=69.66 E-value=3.7 Score=39.18 Aligned_cols=59 Identities=20% Similarity=0.240 Sum_probs=44.5
Q ss_pred eeEEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+. +|..-.....|.|+.|+-+.-. ....+|.+.+||-.
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~d~~~-----~~~~lG~~~i~l~~ 117 (138)
T 1ugk_A 58 HKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSFDRFS-----RDDIIGEVLIPLSG 117 (138)
T ss_dssp SEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEECSSC-----CCCCCEEEEEECTT
T ss_pred ceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEECCCCC-----CCcEEEEEEEehhH
Confidence 35667788888999999999994 8866555678999999864311 23479999999853
No 8
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1
Probab=66.81 E-value=5.9 Score=36.89 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=42.7
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|..++.+|.|+|++.+.++.. +...|.|+.|+-+.- ....+|.+.+||-
T Consensus 41 ~~~kT~v~~~t~nP~wne~f~f~v~~~--~~~~l~i~V~d~d~~------~~~~iG~~~i~l~ 95 (126)
T 1rlw_A 41 SRKRTRHFNNDINPVWNETFEFILDPN--QENVLEITLMDANYV------MDETLGTATFTVS 95 (126)
T ss_dssp CCEECCCCTTCSSCEEEEEEEEEECTT--SCCEEEEEEEECCSS------CCEEEEEEEEEGG
T ss_pred ceEEccccCCCCCCcccceEEEEecCC--CCCEEEEEEEECCCC------CCceeEEEEEEHH
Confidence 456688888889999999999998643 356899999986421 1358999999984
No 9
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A
Probab=66.50 E-value=7.1 Score=37.79 Aligned_cols=55 Identities=20% Similarity=0.307 Sum_probs=42.6
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|..++.+|.|+|++.+.++. ....|.|+.|+.+.- .....+|.+.+||-
T Consensus 58 ~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~l~~~V~d~d~~-----~~d~~iG~~~i~l~ 112 (153)
T 3b7y_A 58 TSVQTKTIKKSLNPKWNEEILFRVHP---QQHRLLFEVFDENRL-----TRDDFLGQVDVPLY 112 (153)
T ss_dssp EEEECCCCSSCSSCCCCEEEEEEECT---TTCEEEEEEEECCSS-----SCCEEEEEEEEECC
T ss_pred eeeeCccccCCCCCCCCCEEEEEecC---CCCEEEEEEEECCCC-----cCCCeeEEEEEEHH
Confidence 45567788888999999999998874 357899999986421 12468999999985
No 10
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2
Probab=66.22 E-value=2.4 Score=41.30 Aligned_cols=57 Identities=18% Similarity=0.247 Sum_probs=43.0
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
+.|.|..++.+|.|+|++.+.++..-.....|.|+.|+.+.- .....+|.+.+||-.
T Consensus 79 ~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~-----~~~~~iG~~~i~l~~ 135 (152)
T 1rsy_A 79 FETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDRF-----SKHDIIGEFKVPMNT 135 (152)
T ss_dssp EECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCSS-----SCCEEEEEEEEEGGG
T ss_pred EeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCCC-----CCCcEEEEEEEEchh
Confidence 456777888999999999998875433457899999986431 124679999999853
No 11
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Probab=65.35 E-value=5.2 Score=38.64 Aligned_cols=58 Identities=14% Similarity=0.276 Sum_probs=44.5
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|..++.+|.|+|++.+.+|.......-|.|+.|+.+.-. ....+|-+.+||-
T Consensus 61 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~ 118 (148)
T 3fdw_A 61 GKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWHHGRFG-----RNTFLGEAEIQMD 118 (148)
T ss_dssp GEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEEECGGG-----CEEEEEEEEEEHH
T ss_pred CccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEECCCCc-----CCcEEEEEEEEcc
Confidence 355677888889999999999998876555567999999864321 2357999999874
No 12
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}
Probab=65.10 E-value=6.4 Score=39.27 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=42.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEE-eecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFH-VDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyH-vs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+.++. ....|.|+.|| -+. ......+|.+.+||-.
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~---~~~~L~~~V~~d~d~-----~~~d~~iG~~~i~l~~ 124 (171)
T 2q3x_A 68 AKKKTRIARKTLDPLYQQSLVFDESP---QGKVLQVIVWGDYGR-----MDHKCFMGVAQILLEE 124 (171)
T ss_dssp EEEECCCCCSCSSCEEEEEEECSSCC---TTEEEEEEEEEECST-----TCSSEEEEEEEECGGG
T ss_pred cceeCccCCCCCCCCCCcEEEEEecC---CCCEEEEEEEEcCCC-----CCCCCEEEEEEEEHHH
Confidence 35678888889999999999998864 35789999994 321 1134689999999854
No 13
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.00 E-value=6.4 Score=37.43 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=44.0
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCC-CCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAV-WTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~-L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.++.. +.....|.|+.|+-+.-. ....+|.+.+||-.
T Consensus 39 ~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~-----~~~~lG~~~i~l~~ 97 (140)
T 2dmh_A 39 KKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG-----QNKLIGTATVALKD 97 (140)
T ss_dssp EEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS-----SCCCCEEEEEEGGG
T ss_pred eEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC-----CCceEEEEEEEHHH
Confidence 46777888888999999999998764 445688999999853321 23469999999853
No 14
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*
Probab=64.99 E-value=4.6 Score=39.58 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=44.6
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++.+.+|..-.....|.|+.|+.+.- .....+|.+.+||-.
T Consensus 62 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~-----~~~~~iG~~~i~l~~ 120 (159)
T 1tjx_A 62 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKI-----GKNDAIGKVFVGYNS 120 (159)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSS-----SCCEEEEEEEEETTC
T ss_pred ceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEECCCC-----CCCceEEEEEECCCC
Confidence 34567788888999999999999886544456799999986431 124679999999864
No 15
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*
Probab=63.61 E-value=9 Score=36.80 Aligned_cols=60 Identities=8% Similarity=0.134 Sum_probs=43.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecc------cccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQ------TKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~------~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.++.. ...|.|+.|+.+.. ++-.......+|-+.+||-.
T Consensus 50 ~~kT~~~~~t~nP~Wne~f~f~v~~~---~~~l~~~v~d~d~~~~~~~~~~~~~~~~~~lG~~~i~l~~ 115 (148)
T 3kwu_A 50 KKRTKTIYGNLNPVWEENFHFECHNS---SDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRT 115 (148)
T ss_dssp EEECCCCCSCSSCEEEEEEEEEECST---TCEEEEEEEECCCSHHHHHHTTTSSCSSEEEEEEEEEGGG
T ss_pred EEECCccCCCCCCCcccEEEEEecCC---CCEEEEEEEECCCCccccccccccCCCCccEEEEEEEHHH
Confidence 34677788889999999999988753 36899999997542 00001234689999999864
No 16
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2
Probab=62.95 E-value=4.5 Score=37.86 Aligned_cols=61 Identities=11% Similarity=0.016 Sum_probs=42.3
Q ss_pred eeEEEEEEEcCCCCcccceEEEec-CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++.+.+ +..-.....|.|+.|+.+.-.+ .....+|-+.+||-.
T Consensus 55 ~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d~d~~~~---~~~~~lG~~~i~l~~ 116 (129)
T 2bwq_A 55 NKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVRE---EESEFLGEILIELET 116 (129)
T ss_dssp GEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEEC----------CEEEEEEEEEGGG
T ss_pred cceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEECCcCcC---cCCceeEEEEEEccc
Confidence 456677888889999999999984 5433345689999998643221 114679999999853
No 17
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.81 E-value=4.2 Score=38.93 Aligned_cols=58 Identities=16% Similarity=0.121 Sum_probs=42.0
Q ss_pred eEEEEEEEcCCCCcccceEEEec-CCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSL-PAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~L-P~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.+ |........|.|+.|+-+.- .....+|.+.+||-.
T Consensus 62 ~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~-----~~~~~iG~~~i~l~~ 120 (141)
T 2d8k_A 62 KLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYDRF-----SRNDPIGEVSIPLNK 120 (141)
T ss_dssp EEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECCSS-----SSCEEEEEEEEETTT
T ss_pred cEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECCCC-----CCCcEEEEEEEEhhh
Confidence 35567777889999999999884 54322456899999986431 123689999999854
No 18
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Probab=60.66 E-value=6 Score=39.05 Aligned_cols=59 Identities=15% Similarity=0.111 Sum_probs=45.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+.++..-.....|.|+.|+-+.- .....+|.+.+||-.
T Consensus 74 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~-----~~~~~iG~~~i~l~~ 132 (166)
T 2cm5_A 74 AKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDYDIG-----KSNDYIGGCQLGISA 132 (166)
T ss_dssp CEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEECCSS-----SCCEEEEEEEEETTC
T ss_pred ceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEECCCC-----CCCcEEEeEEEeccc
Confidence 45667788889999999999999876544467899999986432 124679999999864
No 19
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0
Probab=59.77 E-value=6.1 Score=38.52 Aligned_cols=58 Identities=17% Similarity=0.251 Sum_probs=42.4
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|..++.+|.|+|++.+.+|..-... -|.|+.|+.+.-.+ ....+|-+.+||-
T Consensus 63 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~-~L~i~V~d~d~~~~----~d~~lG~~~i~l~ 120 (153)
T 3fbk_A 63 RHQKTQTVPDCRDPAFHEHFFFPVQEEDDQK-RLLVTVWNRASQSR----QSGLIGCMSFGVK 120 (153)
T ss_dssp TCEECCCCTTCSSCEEEEEEEEECCGGGTTS-EEEEEEEECCSSGG----GCEEEEEEEEEHH
T ss_pred cEEeccccCCCCCCccccEEEEecccHHhCC-EEEEEEEeCCCCCC----CCcEEEEEEEEHH
Confidence 3456778888999999999999987554434 39999998643221 1357899999875
No 20
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Probab=59.23 E-value=6.1 Score=37.48 Aligned_cols=60 Identities=12% Similarity=0.034 Sum_probs=43.5
Q ss_pred eEEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|++.+. ++..-.....|.|+.|+-+...+ .....+|.+.+||-.
T Consensus 59 ~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d~~~~---~~~~~lG~~~i~l~~ 119 (141)
T 1v27_A 59 KRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWDQARVRE---EESEFLGEILIELET 119 (141)
T ss_dssp CCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEEBCSSSS---CCBCCCEEEEEEGGG
T ss_pred ceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEECCCCcC---CCCceEEEEEEEccc
Confidence 4457788889999999999998 56544455789999998643221 124578999999753
No 21
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.09 E-value=2.4 Score=40.68 Aligned_cols=61 Identities=10% Similarity=0.017 Sum_probs=43.0
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++.+.+|..-.....|.|+.|+.+.-.+. ....+|-+.+||-.
T Consensus 60 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~~~---~~~~iG~~~i~l~~ 120 (142)
T 2dmg_A 60 GRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNSGGFLSK---DKGLLGKVLVALAS 120 (142)
T ss_dssp SCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEECCCSSCC---SCCCCEEEEEECCC
T ss_pred CcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEECCCcccc---CCcEEEEEEEeccc
Confidence 34567788889999999999998875433345899999986432110 12468999999843
No 22
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2
Probab=56.91 E-value=5.7 Score=37.59 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=40.4
Q ss_pred EEEEEEE-cCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAV-GARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~y-Hnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..|.+.. ++.+|.|+|++.+.++. ....|.|+.|+-+.-. ....+|.+.+||-
T Consensus 44 ~kT~~~~~~~~nP~Wne~f~f~v~~---~~~~l~~~V~d~~~~~-----~d~~lG~~~i~l~ 97 (136)
T 1wfj_A 44 QKSNVAEGMGTTPEWNETFIFTVSE---GTTELKAKIFDKDVGT-----EDDAVGEATIPLE 97 (136)
T ss_dssp EECCCCTTCCSSCEEEEEEEEEEES---SCCEEEEEECCSSSCT-----TTCCSEEEEEESH
T ss_pred ceeEeccCCCCCCccCcEEEEEECC---CCCEEEEEEEECCCCC-----CCceEEEEEEEHH
Confidence 4677776 68899999999999885 5678999998763211 2357899999874
No 23
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=56.59 E-value=2.6 Score=40.69 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=41.9
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|..++.+|.|+|++.+.++..-.....|.|+.|+.+.-. ....+|-+.+||-.
T Consensus 69 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~~~~iG~~~i~l~~ 126 (147)
T 2enp_A 69 SKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFS-----RHCVIGKVSVPLCE 126 (147)
T ss_dssp CEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEEEEECCSTTC-----CSCCCEEEEEETTT
T ss_pred ceEeecccCCCCCeEeeeEEEEeChHHhccCEEEEEEEECCCCc-----CCcEEEEEEEechh
Confidence 34677888889999999999988753323457999999864211 23479999999853
No 24
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1
Probab=56.58 E-value=7.1 Score=36.89 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=41.1
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.+.|.|..++.+|.|+|++.+.++. ....|.|+.|+-+.-. ....+|.+.+||-.
T Consensus 46 ~~kT~~~~~t~nP~wne~f~f~~~~---~~~~l~i~V~d~d~~~-----~~~~lG~~~i~l~~ 100 (133)
T 2ep6_A 46 RLQTHTVYKNLNPEWNKVFTFPIKD---IHDVLEVTVFDEDGDK-----PPDFLGKVAIPLLS 100 (133)
T ss_dssp EEECCCCSSCSSCCCCEEEEEEESC---TTCEEEEEEEEEETTE-----EEEECCBCEEEGGG
T ss_pred EEEeeeecCCCCCccccEEEEEecC---CCCEEEEEEEECCCCC-----CCCeeEEEEEEHHH
Confidence 3467788888999999999999983 3467999999875422 23568888888753
No 25
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}
Probab=56.52 E-value=5.6 Score=37.96 Aligned_cols=59 Identities=14% Similarity=0.184 Sum_probs=44.0
Q ss_pred eeEEEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++.+. +|..--....|.|+.|+-+.- .....+|-+.+||-.
T Consensus 56 ~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~d~d~~-----~~~~~lG~~~i~l~~ 115 (134)
T 2b3r_A 56 SKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVLSAESL-----RENFFLGGITLPLKD 115 (134)
T ss_dssp CCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEEECCSS-----SCCEEEEEEEEEGGG
T ss_pred ceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEEECCCC-----CCCcEEEEEEEEhhh
Confidence 34567888889999999999998 775433456899999986421 123679999999853
No 26
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}
Probab=56.46 E-value=4.1 Score=40.32 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=44.2
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
...|.|...+.+|.|+|++.+.+|..--....|.|+.|+-+.. .....+|-+.+||-.
T Consensus 82 ~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d~d~~-----~~~d~iG~~~i~l~~ 139 (155)
T 2z0u_A 82 LFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCTTDRS-----HLEECLGGAQISLAE 139 (155)
T ss_dssp EEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEEECTT-----SCEEEEEEEEEECTT
T ss_pred ceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEECCCC-----CCCcEEEEEEEEHHH
Confidence 4567788889999999999999875433456899999986432 134679999999854
No 27
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2
Probab=55.56 E-value=8.1 Score=37.32 Aligned_cols=57 Identities=12% Similarity=0.137 Sum_probs=42.3
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|..++.+|.|+|++.+.++.... ...|.|+.|+.+.- .....+|-+.+||-
T Consensus 68 ~~~kT~v~~~t~nP~wne~f~f~v~~~~~-~~~L~i~V~d~d~~-----~~~~~iG~~~i~l~ 124 (149)
T 1a25_A 68 SKQKTKTIKCSLNPEWNETFRFQLKESDK-DRRLSVEIWDWDLT-----SRNDFMGSLSFGIS 124 (149)
T ss_dssp SCEECCCCSSCSSCEEEEEEEEECCSGGG-GCEEEEEEEECCSS-----SCCEEEEEEEEEHH
T ss_pred ceEecceeCCCCCCcCCcEEEEEeccccC-CCEEEEEEEECCCC-----CCCCEEEEEEEEHH
Confidence 34567788889999999999999875322 34799999986432 12357999999875
No 28
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=55.54 E-value=2.4e+02 Score=36.41 Aligned_cols=86 Identities=12% Similarity=0.179 Sum_probs=54.6
Q ss_pred ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcCCCccCCChhhHHHHHHHHHHHHHHHHhh-ccccccCChhhHhh
Q 001401 910 YLSSVLIQEVFLTWDHDDLSQRAKAARILVVLLCKHEFDARYQKPEDKLYIAQLYFPLIGQILDE-MPVFYNLNAVEKRE 988 (1084)
Q Consensus 910 FL~glLl~el~~~L~~~~~~lr~~Ai~~L~~LL~khd~D~Ryq~~~~k~rIA~LYlPLl~illd~-~~~l~~l~~~e~r~ 988 (1084)
+|...++.++...+..+-+.+-......=.+++.+ |+.. .|+.|- =++-|+.-+..+ ++.+-.++.+..+.
T Consensus 804 ~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~-~f~~---~Pe~r~----~ff~ll~~~~~~~f~~l~~l~~~~~~~ 875 (1073)
T 3gjx_A 804 STMAIIVNKLGGHITAEIPQIFDAVFECTLNMINK-DFEE---YPEHRT----NFFLLLQAVNSHCFPAFLAIPPAQFKL 875 (1073)
T ss_dssp HHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSS-CSSS---CHHHHH----HHHHHHHHHHHHCGGGTTTSCHHHHHH
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhC-Cccc---CcHHHH----HHHHHHHHHHHHHhHHHHcCCHHHHHH
Confidence 56777777777766544344444444444455654 4443 466664 234566666665 44466677777889
Q ss_pred HHHHHHHHHHhCChH
Q 001401 989 VLIVVMEIVRNLDDA 1003 (1084)
Q Consensus 989 LL~CfLwILKnl~~~ 1003 (1084)
++-|.+|-+|+..++
T Consensus 876 ~i~~i~wa~kh~~r~ 890 (1073)
T 3gjx_A 876 VLDSIIWAFKHTMRN 890 (1073)
T ss_dssp HHHHHHHHHTCSSHH
T ss_pred HHHHHHHHcCCCChh
Confidence 999999999888774
No 29
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}
Probab=53.61 E-value=12 Score=37.25 Aligned_cols=56 Identities=20% Similarity=0.298 Sum_probs=41.5
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
..+.|.|..++.+|.|+|++.+.++. ....|.|+.|+.+.-. ....+|-+.+||-.
T Consensus 46 ~~~kT~v~~~t~nP~Wne~f~f~v~~---~~~~L~~~V~d~d~~~-----~d~~lG~~~i~l~~ 101 (176)
T 3m7f_B 46 TSVQTKTIKKSLNPKWNEEILFRVLP---QRHRILFEVFDENRLT-----RDDFLGQVDVPLYP 101 (176)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEEECT---TTCEEEEEEEECC---------CEEEEEEEEESCS
T ss_pred cceeCceECCCCCCcccceEEEEEcC---CCCEEEEEEEECCCCC-----CCcEEEEEEEEHHH
Confidence 34567788889999999999999884 3468999999853311 23579999999853
No 30
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1
Probab=52.25 E-value=17 Score=34.59 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=38.1
Q ss_pred EEEE-EcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 521 TQVA-VGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 521 SsV~-yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
|.+. .++.+|.|+|++...++. ....|.|+.|+-+ - .....+|-+.+||-.
T Consensus 36 t~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-~-----~~dd~iG~~~i~l~~ 87 (131)
T 2cjt_A 36 STTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-L-----IWDTMVGTVWIPLRT 87 (131)
T ss_dssp EECCCEESSSCEEEEEEEEEECC---CSSEEEEEEEECC-S-----SCEEEEEEEEEEGGG
T ss_pred EeEecCCCCCceECCEEEEEEeC---CCCeEEEEEEECC-C-----CCCCeEEEEEEEHHH
Confidence 4443 357899999999999984 3457999999865 1 124689999999853
No 31
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1
Probab=52.21 E-value=20 Score=35.91 Aligned_cols=52 Identities=10% Similarity=0.135 Sum_probs=38.5
Q ss_pred EEEEEE-cCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 520 HTQVAV-GARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 520 ~SsV~y-Hnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.|.+.. ++.+|.|+|++.+.++. ....|.|+.|+-+ -. ....+|-+.+||-.
T Consensus 44 kt~~~~~~t~nP~WnE~f~f~v~~---~~~~L~~~V~D~d-~~-----~dd~iG~~~i~L~~ 96 (167)
T 2cjs_A 44 ESTTIAVRGSQPSWEQDFMFEINR---LDLGLTVEVWNKG-LI-----WDTMVGTVWIPLRT 96 (167)
T ss_dssp EEECCCEESSSCEEEEEEEEECCC---TTSEEEEEEEECC-SS-----CCEEEEEEEEEGGG
T ss_pred EEEEecCCCCCCCCCCEEEEEeeC---CCCEEEEEEEECC-CC-----CCceEEEEEEEHHH
Confidence 344443 57899999999999983 3457999999865 11 24689999999853
No 32
>2qzq_A Axin interactor, dorsalization associated protein; beta sheet sandwich, coiled coil, signaling protein, lipid binding protein; 1.90A {Danio rerio} PDB: 2qz5_A
Probab=50.45 E-value=65 Score=32.12 Aligned_cols=106 Identities=9% Similarity=0.146 Sum_probs=63.7
Q ss_pred eeEEecccccccCcc---ceEEEEEEEeCCccccCCCceeeecCCCCCCCceeEEEEEEEcCCCCcccceEEEecCC-CC
Q 001401 469 CLYVYPSSVSLSRKR---NLFIRVELRKDDADVRRQPLEAIHPREPGVSLQKWAHTQVAVGARMAYYHDEIKVSLPA-VW 544 (1084)
Q Consensus 469 ~LYVYP~~lnFskaR---NI~V~Ve~r~~D~~~~~~~L~~Iygks~~~~f~s~~~SsV~yHnk~P~F~DEIKI~LP~-~L 544 (1084)
.|.|...++.+..|- +=.++|.++|+.|.+.+.+- -.+-+..... ..=.|+-.|.|+-|. +|
T Consensus 15 ~l~v~Ie~iglkda~~~~~P~~tVSV~D~~G~~ve~~Q----dTpv~~~~~~----------~yv~f~~~v~lqtple~l 80 (152)
T 2qzq_A 15 LLTLTIEKIGLKDAGQCIDPYITVSVKDLNGIDLNPVQ----DTPVATRKED----------TYIHFSVDVEIQRHLEKL 80 (152)
T ss_dssp EEEEEEEEEECTTGGGCEEEEEEEEEECTTSCBSSCCE----ECCCCCEECS----------SEEEEEEEEECSSCGGGS
T ss_pred EEEEEEEEEEeCCHHHccCCeEEEEEEcCCCCCccccc----cCCCcceecC----------CeEEEeeEEEeeCcHHHC
Confidence 356777777776654 45699999999875322211 1111111111 111244566666664 48
Q ss_pred CCCceEEEEEEEeecccccCCCCceeEEEEEeccccCCcccc-eeeEEEeec
Q 001401 545 TPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHAQLRS-EISLPIIKE 595 (1084)
Q Consensus 545 ~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g~l~~-e~~LpV~~~ 595 (1084)
.++.=++|+|.|-.-++| +...-+||++++= .+.. ...+++|+.
T Consensus 81 p~G~aivfElkH~k~kkk----k~S~kCw~f~~~d---~i~~g~~~lElY~k 125 (152)
T 2qzq_A 81 PKGAAIFFEFKHYKPKKR----FTSTKCFAFMEMD---EIKPGPIVIELYKK 125 (152)
T ss_dssp CTTCEEEEEEEEEETTTT----EEEEEEEEEEEGG---GCCSEEEEECCEES
T ss_pred CCCcEEEEEEEEecccce----eeeeeeEEEEEhh---hcccCceeeehhcC
Confidence 889999999999844332 3456899999953 3444 667777763
No 33
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A {Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A* 4dnl_A* 2uzp_A*
Probab=49.98 E-value=14 Score=34.82 Aligned_cols=56 Identities=13% Similarity=0.112 Sum_probs=40.9
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
...|.|..++.+|.|+|++.+.++.... ...|.|+.|+.+.-. ....+|-+.+||-
T Consensus 54 ~~kT~~~~~t~nP~wne~f~f~~~~~~~-~~~l~i~v~d~d~~~-----~~~~iG~~~i~l~ 109 (137)
T 3rdl_A 54 KQKTKTIRSTLNPQWNESFTFKLKPSDK-DRRLSVEIWDWDRTT-----RNDFMGSLSFGVS 109 (137)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGG-GCEEEEEEEECCSSS-----CCEEEEEEEEEHH
T ss_pred eecCceEcCCCCCCcccEEEEEcCchhc-CCEEEEEEEECCCCC-----CCceEEEEEEeHH
Confidence 4567788889999999999998875322 247999999863221 2357899888874
No 34
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}
Probab=49.62 E-value=8 Score=38.60 Aligned_cols=52 Identities=15% Similarity=0.195 Sum_probs=38.2
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|...+.+|.|+|++.+.++ +...|.|+.|+-+.- .....+|-+-+||-
T Consensus 74 ~kT~v~~ktlnP~WNE~F~f~v~----~~~~L~~~V~D~d~~-----~~dd~iG~~~i~l~ 125 (157)
T 2fk9_A 74 GQTSTKQKTNKPTYNEEFCANVT----DGGHLELAVFHETPL-----GYDHFVANCTLQFQ 125 (157)
T ss_dssp EECCCCSSCSSCEEEEEEEEEEE----EECEEEEEEEECCSS-----SSCEEEEEEEEEHH
T ss_pred EEeeecCCCCCCccCcEEEEEcC----CCCEEEEEEEECCCC-----CCCCEEEEEEEEHH
Confidence 34566677899999999999876 346899999984321 12357899888873
No 35
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=49.44 E-value=13 Score=39.79 Aligned_cols=56 Identities=16% Similarity=0.254 Sum_probs=41.3
Q ss_pred EEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 519 AHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 519 ~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
+.|.|..++.+|.|+|++.+.++..-.....|.|+.|+.+.-. ....+|.+-+||-
T Consensus 56 ~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~~~-----~~~~lG~~~i~l~ 111 (284)
T 2r83_A 56 FETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDRFS-----KHDIIGEFKVPMN 111 (284)
T ss_dssp EECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCSSS-----CCCEEEEEEEEGG
T ss_pred EeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCCCC-----CCceeEEEEEcch
Confidence 4567777889999999999998865445679999999864321 2246777777764
No 36
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1
Probab=48.58 E-value=9.6 Score=36.24 Aligned_cols=51 Identities=12% Similarity=0.145 Sum_probs=37.4
Q ss_pred EEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 520 HTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 520 ~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
.|.+...+.+|.|+|++.+.++.. ..|.|+.||-+.- .....+|.+-+||-
T Consensus 53 ~T~~~~~t~nP~WnE~f~f~v~~~----~~L~~~V~d~d~~-----~~dd~iG~~~i~l~ 103 (136)
T 1gmi_A 53 QTATKQKTNSPAWHDEFVTDVCNG----RKIELAVFHDAPI-----GYDDFVANCTIQFE 103 (136)
T ss_dssp ECCCCSSCSSCEEEEEEEEEEEEE----CEEEEEEEECCSS-----SSCEEEEEEEEEHH
T ss_pred eeeEECCCcCCccCCEEEEEecCC----CEEEEEEEeCCCC-----CCCCEEEEEEEEHH
Confidence 344455678999999999998743 7899999985321 12357999999874
No 37
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2
Probab=45.85 E-value=16 Score=38.91 Aligned_cols=59 Identities=17% Similarity=0.208 Sum_probs=45.1
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
....|.|..++.+|.|+|++...+|........|.|+.|+-+.-. ....+|-+-+||-.
T Consensus 187 ~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~d~~~-----~~~~iG~~~i~l~~ 245 (284)
T 2r83_A 187 KKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYDKIG-----KNDAIGKVFVGYNS 245 (284)
T ss_dssp EEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEECCSSS-----CCCEEEEEEEETTC
T ss_pred eeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeCCCCC-----CCcEEEEEEECCCC
Confidence 345677888889999999999999876555668999999864321 23579999999854
No 38
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A
Probab=44.97 E-value=18 Score=33.92 Aligned_cols=57 Identities=7% Similarity=0.075 Sum_probs=40.7
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|...+.+|.|+|++.+.++.. ..|.|+.|+-+.-.+.. ....+|-+.+||-
T Consensus 39 ~~~kT~v~~~t~nP~wne~f~f~v~~~----~~l~~~v~d~d~~~~~~--~d~~lG~~~i~l~ 95 (132)
T 3pyc_A 39 QCHSTDTVKNTLDPKWNQHYDLYVGKT----DSITISVWNHKKIHKKQ--GAGFLGCVRLLSN 95 (132)
T ss_dssp CEEECCCCSSCSSCEEEEEEEEEEETT----CCEEEEEEEGGGTTSST--TTTEEEEEEECHH
T ss_pred ceEECCccCCCCCCCccCEEEEEeCCC----CEEEEEEEECCCCCCCC--CCCceEEEEEeHH
Confidence 345677888889999999999888653 24999999875432210 1247999999853
No 39
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Probab=40.58 E-value=25 Score=35.22 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=41.4
Q ss_pred eeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
..+.|.|...+.+|.|+|++.+.+. +...|.|+.|+-+.-. ....+|.+.+||-
T Consensus 68 ~~~kT~v~~~tlnP~Wne~f~f~v~----~~~~L~~~V~D~d~~~-----~dd~lG~~~i~l~ 121 (173)
T 2nq3_A 68 QSKKTEKCNNTNSPKWKQPLTVIVT----PVSKLHFRVWSHQTLK-----SDVLLGTAALDIY 121 (173)
T ss_dssp EEEECCCCSSCSSCEEEEEEEEEEC----TTCEEEEEEEECCSSS-----CCEEEEEEEEEHH
T ss_pred EEeEccccCCCCCCeECCEEEEEeC----CCCEEEEEEEECCCCC-----CCceEEEEEEEHH
Confidence 3456778888899999999999874 4778999999864211 2457999999985
No 40
>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*
Probab=36.25 E-value=41 Score=42.82 Aligned_cols=69 Identities=19% Similarity=0.250 Sum_probs=50.3
Q ss_pred CCCCcccceEEEecCC-CCCCCceEEEEEEEeecc--c----c-cCCCCceeEEEEEecccc-CCcccc-eeeEEEeec
Q 001401 527 ARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQ--T----K-LEAPKPVVIGYAALPLST-HAQLRS-EISLPIIKE 595 (1084)
Q Consensus 527 nk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~--~----K-~~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV~~~ 595 (1084)
..+|.|+|.+...++. +|.....|-||.|-++.+ . + ...+...++|++-+||+. +|.++. .+.|.+...
T Consensus 262 ~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~~l~~G~~~l~lw~~ 340 (940)
T 2wxf_A 262 CSEPVWKQRLEFDISVCDLPRMARLCFALYAVVEKAKKARSTKKKSKKADCPIAWANLMLFDYKDQLKTGERCLYMWPS 340 (940)
T ss_dssp CSSCEEEEEEEEEEEGGGCCTTCEEEEEEEEEC----------------CEEEEEEEEESBCTTSBBCCEEEEEECEEC
T ss_pred CCCcccceEEEcccccccCCcccEEEEEEEEecCCccCccccccccccccceEEEEeeeEECCcCccccCCEEEEEeeC
Confidence 4679999988887764 477788999999998653 1 1 111234799999999996 788988 999988764
No 41
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2
Probab=35.56 E-value=5.3 Score=38.12 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=40.6
Q ss_pred EEEEEEcCCCCcccceEEEe-cCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEecccc
Q 001401 520 HTQVAVGARMAYYHDEIKVS-LPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLST 580 (1084)
Q Consensus 520 ~SsV~yHnk~P~F~DEIKI~-LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~ 580 (1084)
.|.|..++.+|.|+|++.+. +|..--....|.|+.|+-+.- .....+|.+.+||-.
T Consensus 67 kT~v~~~t~nP~wne~f~f~~v~~~~l~~~~l~i~V~d~d~~-----~~~~~lG~~~i~l~~ 123 (142)
T 1rh8_A 67 RTKYVQKSLNPEWNQTVIYKSISMEQLMKKTLEVTVWDYDRF-----SSNDFLGEVLIDLSS 123 (142)
T ss_dssp TTTTTHHHHSCEEEEEEEECSCCHHHHTTCEEEEEEEEECSS-----SCEEEEEEEEEETTS
T ss_pred eccccCCCCCCCCCCEEEECCcCHHHccCCEEEEEEEECCCC-----CCCceEEEEEEeccc
Confidence 35566678899999999986 765433456899999986431 124679999999853
No 42
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=34.25 E-value=23 Score=38.35 Aligned_cols=55 Identities=18% Similarity=0.257 Sum_probs=41.8
Q ss_pred eEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEec
Q 001401 518 WAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALP 577 (1084)
Q Consensus 518 ~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLP 577 (1084)
.+.|.|..++.+|.|+|++.+.++..--.+..|.|+.|+.+--. ....+|.+.+|
T Consensus 56 ~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d~~~-----~~~~iG~~~i~ 110 (296)
T 1dqv_A 56 KFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFDRFS-----RHDLIGQVVLD 110 (296)
T ss_dssp CEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECCSSS-----CCCEEEEEECC
T ss_pred eEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcCCCC-----CCceEEEEEec
Confidence 44677888889999999999998765444568999999874311 23579999986
No 43
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A
Probab=30.98 E-value=31 Score=41.88 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=38.0
Q ss_pred eeEEEEEEEcC-CCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccc
Q 001401 517 KWAHTQVAVGA-RMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLS 579 (1084)
Q Consensus 517 s~~~SsV~yHn-k~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl 579 (1084)
....|.|..+| -+|.|+|++.+.++.. +...|.|+.|+-+.-. ....+|-+.+||-
T Consensus 536 ~~~kTkvi~~ng~NP~WnE~f~F~v~~~--el~~L~~~V~D~D~~~-----~dd~iG~~~ipl~ 592 (624)
T 1djx_A 536 GSRQTAVITNNGFNPRWDMEFEFEVTVP--DLALVRFMVEDYDSSS-----KNDFIGQSTIPWN 592 (624)
T ss_dssp EEEECCCCTTCSSSCEEEEEEEEEESCG--GGCEEEEEEEECCSSS-----CCEEEEEEEEEGG
T ss_pred ceeecccccCCCCCCccCceEEEEEecC--CCCEEEEEEEEcCCCC-----CCceeEEEEEEHH
Confidence 34567788777 8999999999877633 3358999999864221 1245666666653
No 44
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Probab=24.59 E-value=17 Score=39.33 Aligned_cols=62 Identities=13% Similarity=0.071 Sum_probs=46.9
Q ss_pred ceeEEEEEEEcCCCCcccceEEEecCCCCCCCceEEEEEEEeecccccCCCCceeEEEEEeccccCC
Q 001401 516 QKWAHTQVAVGARMAYYHDEIKVSLPAVWTPMHHLLFTFFHVDLQTKLEAPKPVVIGYAALPLSTHA 582 (1084)
Q Consensus 516 ~s~~~SsV~yHnk~P~F~DEIKI~LP~~L~~~hHLLFTFyHvs~~~K~~~~~e~~vGyAwLPLl~~g 582 (1084)
.....|.|..++.+|.|+|++.+.+|........|.|++|+-+.-. ....+|.+.++|-..|
T Consensus 188 ~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~~~-----~~~~iG~~~i~l~~~~ 249 (296)
T 1dqv_A 188 LKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIG-----HNEVIGVCRVGPEAAD 249 (296)
T ss_dssp TSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEECCSSS-----CCEEEEECCCSSCTTC
T ss_pred ccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeCCCCC-----CCceEEEEEECCccCC
Confidence 3456788888999999999999988876545668999999864321 2467999999886543
No 45
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=21.45 E-value=1.2e+03 Score=28.72 Aligned_cols=55 Identities=13% Similarity=0.170 Sum_probs=39.7
Q ss_pred hHHHHHHHhhcCCChhhHHHhHHHHHHHHHHHHhcC--CcchhHHHHHHHHHHHhhh
Q 001401 656 SELLEAINSLKNVDSTALLQFLHPVLNMLLHLIGNG--GETLQVAAFRAMVNILTRV 710 (1084)
Q Consensus 656 ~eL~~~l~~L~~v~~~~lv~FLp~ILd~Lf~ll~~~--~~~~~~~aF~~Lv~Iv~~v 710 (1084)
..-..++..|...-...+..|++.|++.|+.++... .......+++++..|+..+
T Consensus 561 ~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 561 AQATLGLKELCRDCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 334445555544445789999999999999999874 2345567899998888755
No 46
>1e7u_A Phosphatidylinositol 3-kinase catalytic subunit; phosphoinositide 3-kinase gamma, secondary messenger generation, PI3K, PI 3K, wortmannin; HET: KWT; 2.0A {Sus scrofa} SCOP: a.118.1.6 b.7.1.1 d.15.1.5 d.144.1.4 PDB: 1e8x_A* 1e8w_A* 1e7v_A* 1e90_A* 3l54_A* 3s2a_A* 3qaq_A* 3qjz_A* 3qk0_A* 3qar_A* 3apc_A* 3apd_A* 3apf_A* 3dbs_A* 3l13_A* 3r7q_A* 3cst_A* 3csf_A* 3l16_A* 3l17_A* ...
Probab=21.19 E-value=85 Score=40.08 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=48.7
Q ss_pred CCCCcccceEEEecCC-CCCCCceEEEEEEEeeccccc-----------CCCCceeEEEEEecccc-CCcccc-eeeEEE
Q 001401 527 ARMAYYHDEIKVSLPA-VWTPMHHLLFTFFHVDLQTKL-----------EAPKPVVIGYAALPLST-HAQLRS-EISLPI 592 (1084)
Q Consensus 527 nk~P~F~DEIKI~LP~-~L~~~hHLLFTFyHvs~~~K~-----------~~~~e~~vGyAwLPLl~-~g~l~~-e~~LpV 592 (1084)
...|.|+|.+...++. +|.....|-||+|-+....+. ...+..++|++=+||+. +|.+++ .+.|.+
T Consensus 264 ~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~n~~lfd~~~~l~~G~~~L~l 343 (961)
T 1e7u_A 264 TEEVLWNVWLEFSIKIKDLPKGALLNLQIYCGAKPALSGKTSAEMPSPESKGKAQLLYYVNLLLIDHRFLLRHGEYVLHM 343 (961)
T ss_dssp CSEEEEEEEEEEEEEGGGCCTTCEEEEEEEEEEC--------------------CEEEEEEEESBCTTSBBCCEEEEEEC
T ss_pred CCCcccceeEEeccccccCCcccEEEEEEEecccCccccccccccccccccccceeEEEEeeeeecCCCccccCCEEEEE
Confidence 4568899987776663 477788999999987644211 11134699999999995 788888 999988
Q ss_pred eec
Q 001401 593 IKE 595 (1084)
Q Consensus 593 ~~~ 595 (1084)
...
T Consensus 344 w~~ 346 (961)
T 1e7u_A 344 WQL 346 (961)
T ss_dssp EEC
T ss_pred eeC
Confidence 763
Done!