Query 001402
Match_columns 1084
No_of_seqs 475 out of 2592
Neff 6.9
Searched_HMMs 46136
Date Thu Mar 28 23:54:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001402.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001402hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13412 fkp bifunctional fuco 100.0 7E-157 2E-161 1436.7 75.3 919 32-1083 21-967 (974)
2 KOG4644 L-fucose kinase [Carbo 100.0 2.6E-86 5.5E-91 729.3 40.6 847 204-1083 4-938 (948)
3 PF07959 Fucokinase: L-fucokin 100.0 8.6E-75 1.9E-79 674.1 26.0 390 153-554 1-414 (414)
4 COG2605 Predicted kinase relat 100.0 1.8E-46 3.8E-51 396.6 30.6 314 740-1074 2-319 (333)
5 COG0448 GlgC ADP-glucose pyrop 100.0 5.2E-45 1.1E-49 406.3 19.9 271 145-482 62-363 (393)
6 COG0153 GalK Galactokinase [Ca 100.0 7.8E-43 1.7E-47 387.7 35.1 318 739-1082 23-384 (390)
7 PRK05101 galactokinase; Provis 100.0 9.7E-39 2.1E-43 370.5 36.9 317 740-1082 21-377 (382)
8 PRK00555 galactokinase; Provis 100.0 2.7E-38 5.8E-43 364.1 36.9 318 740-1082 3-357 (363)
9 PRK05322 galactokinase; Provis 100.0 3.9E-38 8.4E-43 365.7 34.7 317 740-1082 20-382 (387)
10 PLN02865 galactokinase 100.0 5.3E-38 1.1E-42 363.8 35.6 324 740-1082 31-418 (423)
11 PTZ00290 galactokinase; Provis 100.0 2E-37 4.3E-42 362.2 35.4 321 740-1082 38-451 (468)
12 TIGR00131 gal_kin galactokinas 100.0 6.8E-37 1.5E-41 356.6 34.9 318 740-1082 18-381 (386)
13 TIGR01220 Pmev_kin_Gr_pos phos 100.0 1.8E-36 3.9E-41 348.6 36.2 313 741-1069 2-346 (358)
14 PLN02521 galactokinase 100.0 2.4E-35 5.3E-40 348.9 36.1 317 740-1082 49-489 (497)
15 TIGR00549 mevalon_kin mevalona 100.0 1E-35 2.2E-40 331.4 30.1 271 744-1051 1-273 (273)
16 PLN02677 mevalonate kinase 100.0 3.2E-35 6.9E-40 338.0 33.8 315 740-1083 3-377 (387)
17 PRK03817 galactokinase; Provis 100.0 1.2E-33 2.6E-38 325.6 36.2 313 741-1081 2-344 (351)
18 COG1577 ERG12 Mevalonate kinas 100.0 8.8E-34 1.9E-38 314.3 31.5 294 741-1070 2-297 (307)
19 PRK03926 mevalonate kinase; Pr 100.0 7.4E-33 1.6E-37 312.9 36.6 289 740-1082 2-293 (302)
20 PTZ00298 mevalonate kinase; Pr 100.0 1.3E-31 2.8E-36 305.7 31.9 297 739-1069 10-310 (328)
21 KOG1511 Mevalonate kinase MVK/ 100.0 1.9E-26 4.1E-31 249.8 31.2 310 740-1081 5-373 (397)
22 PRK00128 ipk 4-diphosphocytidy 99.9 2.3E-24 5.1E-29 241.8 26.5 274 740-1081 3-282 (286)
23 PLN02451 homoserine kinase 99.9 1E-23 2.2E-28 243.0 30.8 305 732-1083 46-360 (370)
24 COG0083 ThrB Homoserine kinase 99.9 1.5E-23 3.3E-28 230.3 28.6 281 739-1082 3-291 (299)
25 KOG0631 Galactokinase [Carbohy 99.9 2.5E-24 5.3E-29 243.6 22.5 310 739-1068 39-457 (489)
26 PRK02534 4-diphosphocytidyl-2- 99.9 1.2E-22 2.6E-27 230.6 30.9 291 739-1083 3-306 (312)
27 PRK01212 homoserine kinase; Pr 99.9 9.8E-23 2.1E-27 230.4 27.4 287 738-1083 2-296 (301)
28 TIGR00154 ispE 4-diphosphocyti 99.9 4.8E-22 1E-26 223.3 30.1 277 741-1078 3-285 (293)
29 PTZ00299 homoserine kinase; Pr 99.9 1.8E-22 3.9E-27 228.9 25.0 288 737-1083 5-317 (336)
30 TIGR00191 thrB homoserine kina 99.9 4.7E-22 1E-26 224.8 26.3 286 740-1083 1-297 (302)
31 TIGR01219 Pmev_kin_ERG8 phosph 99.9 4.4E-21 9.6E-26 223.6 33.2 320 742-1080 2-441 (454)
32 PRK03188 4-diphosphocytidyl-2- 99.9 1.6E-20 3.5E-25 212.2 26.7 272 741-1068 2-276 (300)
33 PRK01123 shikimate kinase; Pro 99.9 6.6E-20 1.4E-24 205.2 26.8 271 746-1083 3-277 (282)
34 PRK14614 4-diphosphocytidyl-2- 99.8 5.2E-19 1.1E-23 197.7 28.9 262 740-1068 4-269 (280)
35 PRK14615 4-diphosphocytidyl-2- 99.8 1.2E-18 2.6E-23 196.0 28.7 277 737-1068 4-287 (296)
36 PRK14616 4-diphosphocytidyl-2- 99.8 1.3E-18 2.8E-23 195.4 27.9 266 739-1068 3-273 (287)
37 PRK14608 4-diphosphocytidyl-2- 99.8 2.8E-18 6E-23 192.7 30.2 266 739-1068 6-278 (290)
38 TIGR01920 Shik_kin_archae shik 99.8 1.1E-18 2.5E-23 192.8 26.7 205 822-1068 46-254 (261)
39 PRK14611 4-diphosphocytidyl-2- 99.8 1.6E-18 3.6E-23 193.3 26.5 269 741-1080 3-274 (275)
40 PRK14612 4-diphosphocytidyl-2- 99.8 2.9E-18 6.2E-23 191.5 26.0 259 740-1068 3-264 (276)
41 PRK14613 4-diphosphocytidyl-2- 99.8 1.6E-17 3.4E-22 187.0 28.8 279 743-1068 2-286 (297)
42 KOG1322 GDP-mannose pyrophosph 99.8 5.4E-19 1.2E-23 191.3 12.4 212 180-458 95-320 (371)
43 PRK00343 ipk 4-diphosphocytidy 99.8 5.7E-17 1.2E-21 180.2 28.4 253 740-1068 7-262 (271)
44 TIGR00144 beta_RFAP_syn beta-R 99.8 7.2E-17 1.6E-21 183.6 28.8 295 741-1083 2-319 (324)
45 PRK00725 glgC glucose-1-phosph 99.8 1.5E-17 3.3E-22 196.7 22.4 256 180-482 109-395 (425)
46 PRK14609 4-diphosphocytidyl-2- 99.8 2.7E-17 5.9E-22 182.6 22.5 251 741-1058 2-256 (269)
47 COG1947 IspE 4-diphosphocytidy 99.8 1.4E-16 3E-21 174.6 27.0 274 739-1080 3-283 (289)
48 PRK00844 glgC glucose-1-phosph 99.7 9.1E-17 2E-21 189.3 24.1 287 147-482 64-383 (407)
49 PRK14610 4-diphosphocytidyl-2- 99.7 1.9E-16 4.2E-21 177.2 25.5 261 739-1068 3-270 (283)
50 PRK02862 glgC glucose-1-phosph 99.7 2.8E-16 6E-21 186.2 20.1 254 182-479 98-392 (429)
51 PRK00650 4-diphosphocytidyl-2- 99.7 2.3E-15 4.9E-20 167.0 24.6 248 742-1068 3-257 (288)
52 PRK05293 glgC glucose-1-phosph 99.7 5.6E-16 1.2E-20 181.1 18.8 245 180-478 97-356 (380)
53 PLN02241 glucose-1-phosphate a 99.7 2.3E-15 5.1E-20 178.8 20.6 260 180-479 99-399 (436)
54 TIGR02091 glgC glucose-1-phosp 99.6 2.3E-14 4.9E-19 166.4 19.9 255 180-479 91-359 (361)
55 PRK05905 hypothetical protein; 99.6 1.3E-13 2.9E-18 151.0 23.0 243 742-1053 3-254 (258)
56 COG1685 Archaeal shikimate kin 99.5 4.1E-12 8.9E-17 135.6 25.7 216 821-1082 51-270 (278)
57 PRK04181 4-diphosphocytidyl-2- 99.5 1.3E-12 2.8E-17 143.8 22.1 178 741-962 2-185 (257)
58 TIGR01240 mevDPdecarb diphosph 99.4 1.9E-11 4.2E-16 137.7 25.7 225 823-1069 68-304 (305)
59 TIGR02092 glgD glucose-1-phosp 99.4 3.3E-12 7.1E-17 148.9 18.1 226 206-479 114-353 (369)
60 COG1907 Predicted archaeal sug 99.4 4E-10 8.7E-15 121.5 27.3 223 842-1083 70-306 (312)
61 PF00288 GHMP_kinases_N: GHMP 99.3 3.6E-12 7.9E-17 111.4 7.4 67 845-912 1-67 (67)
62 COG3890 ERG8 Phosphomevalonate 99.3 2.2E-09 4.8E-14 114.3 27.7 207 855-1079 107-325 (337)
63 COG4542 PduX Protein involved 99.3 1.5E-10 3.4E-15 121.9 18.9 185 838-1054 78-263 (293)
64 TIGR01208 rmlA_long glucose-1- 99.2 2.6E-10 5.6E-15 132.2 16.5 98 181-310 82-183 (353)
65 COG1829 Predicted archaeal kin 99.1 1.7E-08 3.6E-13 108.8 24.3 203 841-1078 72-276 (283)
66 PRK09451 glmU bifunctional N-a 99.1 4E-10 8.6E-15 135.2 12.7 244 182-458 80-339 (456)
67 PF08544 GHMP_kinases_C: GHMP 99.1 2.8E-10 6.1E-15 103.9 8.1 81 988-1068 1-82 (85)
68 COG1208 GCD1 Nucleoside-diphos 99.1 1.5E-09 3.2E-14 125.9 15.8 226 180-459 82-318 (358)
69 PLN02407 diphosphomevalonate d 99.0 2.8E-08 6E-13 112.1 21.8 208 845-1069 105-331 (343)
70 PRK14355 glmU bifunctional N-a 99.0 3.2E-09 7E-14 127.4 15.0 104 182-310 79-188 (459)
71 PRK14358 glmU bifunctional N-a 99.0 2.8E-09 6.1E-14 128.5 12.8 99 181-304 81-185 (481)
72 COG3407 MVD1 Mevalonate pyroph 99.0 1.8E-07 4E-12 104.7 25.3 224 822-1068 72-307 (329)
73 PRK14356 glmU bifunctional N-a 98.9 1.5E-08 3.2E-13 121.6 14.9 106 182-310 80-189 (456)
74 KOG1460 GDP-mannose pyrophosph 98.9 8.8E-09 1.9E-13 110.8 10.7 254 177-459 84-362 (407)
75 TIGR01173 glmU UDP-N-acetylglu 98.8 3.8E-08 8.2E-13 117.8 14.6 104 182-311 75-182 (451)
76 PRK14353 glmU bifunctional N-a 98.8 5.7E-08 1.2E-12 116.2 15.6 239 181-460 81-344 (446)
77 PRK14352 glmU bifunctional N-a 98.8 1.4E-07 3E-12 114.1 18.2 108 180-311 79-192 (482)
78 PRK14357 glmU bifunctional N-a 98.8 5.4E-08 1.2E-12 116.5 13.9 102 182-311 73-180 (448)
79 PF10509 GalKase_gal_bdg: Gala 98.7 1.2E-08 2.5E-13 84.3 5.0 38 740-787 14-51 (52)
80 PRK14360 glmU bifunctional N-a 98.7 9.4E-08 2E-12 114.5 14.4 105 181-310 76-186 (450)
81 PRK14359 glmU bifunctional N-a 98.7 2.3E-07 5.1E-12 110.4 15.8 221 206-459 93-336 (430)
82 KOG4519 Phosphomevalonate kina 98.6 9.4E-06 2E-10 88.7 24.1 212 855-1079 152-441 (459)
83 PRK14354 glmU bifunctional N-a 98.6 6.5E-07 1.4E-11 107.6 16.7 105 182-311 76-186 (458)
84 cd06428 M1P_guanylylT_A_like_N 98.5 4.3E-07 9.2E-12 100.7 11.3 103 181-309 84-191 (257)
85 KOG1537 Homoserine kinase [Ami 98.5 3.6E-07 7.8E-12 96.8 8.6 203 843-1068 94-330 (355)
86 KOG2833 Mevalonate pyrophospha 98.4 2.3E-05 5.1E-10 85.5 21.3 202 843-1067 105-327 (395)
87 PF00483 NTP_transferase: Nucl 98.4 2.6E-07 5.7E-12 101.3 4.0 148 182-359 84-241 (248)
88 KOG1462 Translation initiation 98.3 7.2E-07 1.6E-11 99.9 6.4 105 369-483 314-422 (433)
89 COG1209 RfbA dTDP-glucose pyro 98.3 2.4E-06 5.1E-11 92.6 9.8 224 147-450 2-285 (286)
90 KOG1461 Translation initiation 98.3 6.6E-06 1.4E-10 97.3 12.8 55 405-459 335-389 (673)
91 COG1207 GlmU N-acetylglucosami 98.2 1.6E-05 3.5E-10 90.7 14.1 243 180-459 76-343 (460)
92 cd06425 M1P_guanylylT_B_like_N 98.0 2.3E-05 5E-10 85.5 10.2 138 181-359 83-228 (233)
93 cd04652 LbH_eIF2B_gamma_C eIF- 98.0 1.5E-05 3.2E-10 72.3 7.2 63 405-477 18-80 (81)
94 cd04651 LbH_G1P_AT_C Glucose-1 97.9 3.5E-05 7.5E-10 73.5 8.5 69 401-480 10-78 (104)
95 TIGR01099 galU UTP-glucose-1-p 97.9 2.3E-05 5E-10 86.8 7.7 103 180-310 102-215 (260)
96 cd04181 NTP_transferase NTP_tr 97.9 3.8E-05 8.2E-10 82.2 9.0 97 182-310 81-181 (217)
97 TIGR02623 G1P_cyt_trans glucos 97.8 5.8E-05 1.2E-09 83.7 8.7 94 181-310 102-199 (254)
98 KOG1461 Translation initiation 97.7 3.5E-05 7.5E-10 91.4 6.2 76 394-479 341-417 (673)
99 cd03356 LbH_G1P_AT_C_like Left 97.6 0.00019 4.1E-09 64.5 7.3 51 409-459 5-55 (79)
100 PRK15480 glucose-1-phosphate t 97.6 0.00022 4.7E-09 80.7 9.4 96 181-307 86-186 (292)
101 COG0448 GlgC ADP-glucose pyrop 97.6 7.5E-05 1.6E-09 85.4 5.6 68 386-455 296-363 (393)
102 cd04652 LbH_eIF2B_gamma_C eIF- 97.6 0.00021 4.6E-09 64.7 7.1 61 409-479 5-65 (81)
103 TIGR01207 rmlA glucose-1-phosp 97.5 0.00022 4.7E-09 80.5 8.6 98 181-310 82-184 (286)
104 cd03356 LbH_G1P_AT_C_like Left 97.5 0.00028 6E-09 63.4 7.3 56 404-459 17-73 (79)
105 cd02541 UGPase_prokaryotic Pro 97.5 0.00022 4.7E-09 79.5 7.9 105 180-309 102-214 (267)
106 cd02509 GDP-M1P_Guanylyltransf 97.5 0.0003 6.6E-09 78.9 8.9 117 182-312 84-209 (274)
107 cd05787 LbH_eIF2B_epsilon eIF- 97.4 0.00041 8.9E-09 62.0 7.1 60 409-478 5-64 (79)
108 cd02538 G1P_TT_short G1P_TT_sh 97.3 0.00059 1.3E-08 74.8 8.4 98 181-310 83-185 (240)
109 PRK13389 UTP--glucose-1-phosph 97.2 0.0013 2.8E-08 74.9 9.4 106 180-310 111-229 (302)
110 cd04651 LbH_G1P_AT_C Glucose-1 97.2 0.00083 1.8E-08 64.1 6.4 75 381-456 7-81 (104)
111 cd02524 G1P_cytidylyltransfera 97.1 0.0014 3E-08 72.6 8.9 92 182-306 102-197 (253)
112 cd05824 LbH_M1P_guanylylT_C Ma 97.1 0.0016 3.5E-08 58.8 7.8 50 411-460 7-57 (80)
113 KOG1462 Translation initiation 97.1 0.00055 1.2E-08 77.4 5.6 58 403-460 334-391 (433)
114 cd06915 NTP_transferase_WcbM_l 97.1 0.0017 3.6E-08 69.8 8.7 98 180-308 79-180 (223)
115 cd04197 eIF-2B_epsilon_N The N 97.1 0.00054 1.2E-08 74.0 4.9 89 207-304 105-216 (217)
116 TIGR01105 galF UTP-glucose-1-p 97.1 0.0016 3.5E-08 73.9 8.9 107 180-307 106-224 (297)
117 cd06422 NTP_transferase_like_1 97.0 0.0016 3.5E-08 70.2 8.0 95 181-309 81-181 (221)
118 PRK02862 glgC glucose-1-phosph 96.9 0.0022 4.7E-08 76.7 8.5 83 369-456 295-396 (429)
119 PRK10122 GalU regulator GalF; 96.9 0.0033 7.2E-08 71.4 8.9 110 180-310 106-227 (297)
120 PRK00725 glgC glucose-1-phosph 96.8 0.0022 4.8E-08 76.6 7.7 72 387-459 328-400 (425)
121 cd05787 LbH_eIF2B_epsilon eIF- 96.8 0.0031 6.8E-08 56.3 6.9 49 405-453 18-66 (79)
122 TIGR02092 glgD glucose-1-phosp 96.8 0.0024 5.2E-08 74.7 7.6 77 379-457 282-358 (369)
123 cd04189 G1P_TT_long G1P_TT_lon 96.8 0.0046 1E-07 67.3 9.4 96 181-308 82-181 (236)
124 PRK05293 glgC glucose-1-phosph 96.8 0.002 4.3E-08 75.7 6.7 73 380-454 287-359 (380)
125 PRK00844 glgC glucose-1-phosph 96.6 0.0031 6.8E-08 74.8 6.5 54 401-454 329-382 (407)
126 cd05824 LbH_M1P_guanylylT_C Ma 96.3 0.012 2.5E-07 53.2 7.0 49 406-454 20-68 (80)
127 cd04183 GT2_BcE_like GT2_BcbE_ 96.2 0.018 3.9E-07 62.6 9.1 97 181-310 81-182 (231)
128 cd06426 NTP_transferase_like_2 96.1 0.014 3.1E-07 62.7 7.5 77 206-307 95-175 (220)
129 TIGR01479 GMP_PMI mannose-1-ph 96.0 0.026 5.5E-07 68.3 10.0 119 182-312 84-211 (468)
130 cd02540 GT2_GlmU_N_bac N-termi 96.0 0.027 5.9E-07 60.9 9.1 104 182-310 73-182 (229)
131 cd05636 LbH_G1P_TT_C_like Puta 95.9 0.016 3.5E-07 59.7 6.9 61 409-479 41-102 (163)
132 TIGR01208 rmlA_long glucose-1- 95.9 0.011 2.4E-07 68.8 6.1 47 411-457 256-302 (353)
133 cd02523 PC_cytidylyltransferas 95.8 0.019 4.2E-07 62.3 7.2 99 182-310 79-178 (229)
134 TIGR03308 phn_thr-fam phosphon 95.8 0.017 3.7E-07 62.0 6.6 59 411-479 10-68 (204)
135 TIGR02091 glgC glucose-1-phosp 95.8 0.015 3.3E-07 67.7 6.5 81 370-453 280-360 (361)
136 cd02507 eIF-2B_gamma_N_like Th 95.7 0.0089 1.9E-07 64.6 3.7 108 180-304 87-215 (216)
137 cd04745 LbH_paaY_like paaY-lik 95.5 0.035 7.6E-07 56.8 7.4 33 421-453 62-94 (155)
138 PLN02472 uncharacterized prote 95.5 0.024 5.3E-07 62.5 6.5 40 420-459 126-166 (246)
139 cd04745 LbH_paaY_like paaY-lik 95.4 0.032 6.9E-07 57.1 6.6 53 408-460 23-84 (155)
140 cd05636 LbH_G1P_TT_C_like Puta 95.4 0.045 9.7E-07 56.4 7.5 55 405-459 55-109 (163)
141 cd04645 LbH_gamma_CA_like Gamm 95.3 0.054 1.2E-06 55.3 7.9 32 422-453 62-93 (153)
142 PLN02241 glucose-1-phosphate a 95.1 0.04 8.7E-07 66.1 7.3 81 371-456 304-403 (436)
143 TIGR02287 PaaY phenylacetic ac 95.1 0.043 9.3E-07 58.4 6.6 38 422-459 49-91 (192)
144 PLN02296 carbonate dehydratase 95.0 0.049 1.1E-06 60.9 7.0 51 409-459 76-141 (269)
145 cd00208 LbetaH Left-handed par 94.9 0.089 1.9E-06 46.3 7.2 44 410-453 7-60 (78)
146 TIGR02287 PaaY phenylacetic ac 94.9 0.04 8.6E-07 58.6 5.5 52 408-459 52-109 (192)
147 TIGR01173 glmU UDP-N-acetylglu 94.8 0.064 1.4E-06 64.4 7.9 53 406-458 282-335 (451)
148 cd00710 LbH_gamma_CA Gamma car 94.7 0.078 1.7E-06 55.0 7.2 49 411-459 72-121 (167)
149 PLN02296 carbonate dehydratase 94.7 0.056 1.2E-06 60.4 6.4 40 420-459 119-159 (269)
150 cd04650 LbH_FBP Ferripyochelin 94.7 0.11 2.4E-06 53.2 8.1 32 421-452 62-93 (154)
151 PRK09451 glmU bifunctional N-a 94.7 0.053 1.1E-06 65.4 6.7 50 410-459 272-322 (456)
152 cd04645 LbH_gamma_CA_like Gamm 94.6 0.093 2E-06 53.5 7.4 51 409-459 23-82 (153)
153 cd03353 LbH_GlmU_C N-acetyl-gl 94.6 0.098 2.1E-06 55.4 7.6 52 407-458 37-89 (193)
154 cd03353 LbH_GlmU_C N-acetyl-gl 94.5 0.08 1.7E-06 56.1 6.9 55 405-459 52-107 (193)
155 PRK14360 glmU bifunctional N-a 94.4 0.079 1.7E-06 63.7 7.2 54 405-459 299-353 (450)
156 PRK05450 3-deoxy-manno-octulos 94.3 0.088 1.9E-06 57.7 6.8 92 206-310 91-194 (245)
157 PRK14356 glmU bifunctional N-a 94.1 0.1 2.2E-06 62.9 7.5 54 406-459 290-344 (456)
158 cd03360 LbH_AT_putative Putati 93.9 0.16 3.4E-06 52.9 7.6 32 421-452 109-141 (197)
159 PRK14355 glmU bifunctional N-a 93.9 0.11 2.3E-06 62.9 7.0 39 421-459 287-325 (459)
160 cd04650 LbH_FBP Ferripyochelin 93.9 0.2 4.3E-06 51.3 7.9 53 407-459 22-83 (154)
161 PRK13627 carnitine operon prot 93.8 0.17 3.7E-06 54.0 7.5 33 420-452 71-103 (196)
162 PRK13627 carnitine operon prot 93.7 0.12 2.7E-06 55.1 6.3 53 408-460 33-94 (196)
163 TIGR03308 phn_thr-fam phosphon 93.7 0.13 2.8E-06 55.3 6.5 51 405-455 21-71 (204)
164 cd05635 LbH_unknown Uncharacte 93.6 0.14 3.1E-06 48.6 5.8 24 436-459 61-84 (101)
165 cd03359 LbH_Dynactin_5 Dynacti 93.6 0.18 4E-06 51.9 7.1 39 421-459 73-112 (161)
166 COG1210 GalU UDP-glucose pyrop 93.5 0.14 3.1E-06 56.4 6.2 90 207-309 124-219 (291)
167 cd03358 LbH_WxcM_N_like WcxM-l 93.4 0.23 5.1E-06 47.9 7.2 38 420-457 16-54 (119)
168 cd05635 LbH_unknown Uncharacte 93.3 0.16 3.4E-06 48.3 5.6 39 417-455 59-97 (101)
169 cd04646 LbH_Dynactin_6 Dynacti 93.3 0.25 5.4E-06 51.2 7.6 51 409-459 44-106 (164)
170 PLN02472 uncharacterized prote 93.3 0.16 3.4E-06 56.1 6.4 40 421-460 99-149 (246)
171 PF00132 Hexapep: Bacterial tr 93.2 0.037 8.1E-07 41.8 0.9 35 420-454 1-36 (36)
172 cd02517 CMP-KDO-Synthetase CMP 92.9 0.22 4.8E-06 54.3 6.9 91 206-310 90-191 (239)
173 TIGR00965 dapD 2,3,4,5-tetrahy 92.9 0.21 4.6E-06 55.4 6.6 22 438-459 174-196 (269)
174 cd03357 LbH_MAT_GAT Maltose O- 92.7 0.2 4.4E-06 52.0 5.9 36 424-459 116-153 (169)
175 TIGR00965 dapD 2,3,4,5-tetrahy 92.7 0.26 5.6E-06 54.8 6.9 13 422-434 175-187 (269)
176 TIGR03532 DapD_Ac 2,3,4,5-tetr 92.5 0.2 4.2E-06 55.0 5.7 40 420-459 134-183 (231)
177 PRK14353 glmU bifunctional N-a 92.4 0.24 5.2E-06 59.5 6.8 50 408-457 308-358 (446)
178 PRK14359 glmU bifunctional N-a 92.1 0.26 5.6E-06 58.9 6.6 50 409-459 271-320 (430)
179 cd03358 LbH_WxcM_N_like WcxM-l 92.1 0.29 6.3E-06 47.2 5.8 44 409-452 22-82 (119)
180 cd03360 LbH_AT_putative Putati 91.9 0.29 6.2E-06 50.9 5.9 33 420-452 126-159 (197)
181 PRK14358 glmU bifunctional N-a 91.8 0.33 7.1E-06 59.1 7.1 53 407-459 292-345 (481)
182 PRK14354 glmU bifunctional N-a 91.7 0.32 7E-06 58.6 6.9 56 403-459 300-356 (458)
183 cd03359 LbH_Dynactin_5 Dynacti 91.6 0.45 9.8E-06 49.0 6.9 39 421-459 43-94 (161)
184 COG1208 GCD1 Nucleoside-diphos 91.3 0.26 5.6E-06 57.6 5.3 45 405-449 281-325 (358)
185 COG0836 {ManC} Mannose-1-phosp 90.8 0.66 1.4E-05 52.4 7.6 117 183-312 88-213 (333)
186 PRK11830 dapD 2,3,4,5-tetrahyd 90.7 0.49 1.1E-05 53.0 6.5 15 438-452 177-191 (272)
187 cd00208 LbetaH Left-handed par 90.6 0.58 1.3E-05 41.0 5.8 36 421-456 1-37 (78)
188 PRK10092 maltose O-acetyltrans 90.5 0.54 1.2E-05 49.6 6.4 48 424-483 127-176 (183)
189 cd04647 LbH_MAT_like Maltose O 90.3 0.66 1.4E-05 43.8 6.3 13 423-435 24-36 (109)
190 cd04646 LbH_Dynactin_6 Dynacti 90.0 0.74 1.6E-05 47.7 6.8 51 409-459 23-88 (164)
191 cd00710 LbH_gamma_CA Gamma car 90.0 0.78 1.7E-05 47.5 6.9 39 421-459 65-104 (167)
192 cd03352 LbH_LpxD UDP-3-O-acyl- 89.4 0.71 1.5E-05 49.3 6.3 9 471-479 62-70 (205)
193 cd03350 LbH_THP_succinylT 2,3, 89.4 1 2.2E-05 45.2 7.0 40 420-459 49-98 (139)
194 TIGR03570 NeuD_NnaD sugar O-ac 89.3 0.66 1.4E-05 48.8 6.0 6 444-449 142-147 (201)
195 TIGR01853 lipid_A_lpxD UDP-3-O 89.3 0.61 1.3E-05 53.8 6.0 34 420-453 139-173 (324)
196 TIGR01853 lipid_A_lpxD UDP-3-O 89.1 0.77 1.7E-05 53.0 6.7 46 409-454 145-212 (324)
197 COG0663 PaaY Carbonic anhydras 89.0 0.88 1.9E-05 47.3 6.3 69 422-495 74-145 (176)
198 cd02508 ADP_Glucose_PP ADP-glu 88.8 0.8 1.7E-05 48.7 6.1 52 180-237 91-146 (200)
199 TIGR03570 NeuD_NnaD sugar O-ac 88.8 0.93 2E-05 47.6 6.6 15 437-451 129-143 (201)
200 cd04647 LbH_MAT_like Maltose O 88.4 1.2 2.5E-05 42.1 6.3 30 423-452 55-85 (109)
201 PLN02694 serine O-acetyltransf 88.3 1 2.3E-05 50.6 6.8 14 439-452 214-227 (294)
202 PF14602 Hexapep_2: Hexapeptid 88.3 0.45 9.8E-06 35.9 2.7 31 422-453 3-33 (34)
203 cd04649 LbH_THP_succinylT_puta 88.3 1.8 3.9E-05 43.9 7.8 32 421-453 48-83 (147)
204 PRK14352 glmU bifunctional N-a 88.1 1.1 2.4E-05 54.6 7.5 35 419-453 356-390 (482)
205 PRK14357 glmU bifunctional N-a 87.9 0.64 1.4E-05 55.9 5.3 55 404-459 291-346 (448)
206 PLN02694 serine O-acetyltransf 87.7 0.69 1.5E-05 52.1 4.9 36 418-453 210-246 (294)
207 TIGR03532 DapD_Ac 2,3,4,5-tetr 87.6 1.1 2.3E-05 49.2 6.3 35 420-454 116-151 (231)
208 PRK05289 UDP-N-acetylglucosami 87.6 1.5 3.3E-05 48.9 7.6 16 421-436 81-96 (262)
209 TIGR03536 DapD_gpp 2,3,4,5-tet 86.8 1.5 3.3E-05 49.6 6.9 34 419-453 223-260 (341)
210 TIGR01172 cysE serine O-acetyl 86.8 1.4 3E-05 45.5 6.3 15 439-453 115-129 (162)
211 TIGR01172 cysE serine O-acetyl 86.0 1.8 3.9E-05 44.8 6.6 31 422-452 115-146 (162)
212 PLN02357 serine acetyltransfer 85.7 1.4 3E-05 51.0 6.1 22 438-459 279-301 (360)
213 KOG1460 GDP-mannose pyrophosph 85.2 1.1 2.3E-05 49.9 4.5 58 402-459 322-393 (407)
214 COG1044 LpxD UDP-3-O-[3-hydrox 85.0 1.6 3.4E-05 49.8 6.0 9 471-479 172-180 (338)
215 PLN02739 serine acetyltransfer 84.7 1.7 3.6E-05 50.1 6.0 16 438-453 258-273 (355)
216 PRK15460 cpsB mannose-1-phosph 84.7 2.3 4.9E-05 51.7 7.5 99 207-312 111-220 (478)
217 PRK11132 cysE serine acetyltra 84.6 1.7 3.6E-05 48.8 5.9 16 438-453 194-209 (273)
218 PRK00892 lpxD UDP-3-O-[3-hydro 83.4 2.2 4.7E-05 49.7 6.5 42 412-453 157-219 (343)
219 COG0663 PaaY Carbonic anhydras 83.2 2.7 5.9E-05 43.8 6.3 46 410-455 79-125 (176)
220 PRK11830 dapD 2,3,4,5-tetrahyd 82.8 2.7 5.9E-05 47.1 6.6 44 409-452 115-159 (272)
221 cd04649 LbH_THP_succinylT_puta 82.6 3.2 7E-05 42.1 6.4 43 411-453 15-63 (147)
222 PRK09527 lacA galactoside O-ac 82.5 2.7 5.9E-05 45.2 6.3 27 427-453 132-159 (203)
223 PRK05289 UDP-N-acetylglucosami 81.7 3.1 6.6E-05 46.6 6.6 35 421-455 51-98 (262)
224 PRK00892 lpxD UDP-3-O-[3-hydro 81.3 1.9 4.1E-05 50.2 4.9 9 269-277 39-47 (343)
225 COG1207 GlmU N-acetylglucosami 81.3 1.7 3.6E-05 51.0 4.3 41 420-460 286-326 (460)
226 PRK12461 UDP-N-acetylglucosami 80.9 3.1 6.7E-05 46.3 6.3 33 421-453 24-57 (255)
227 cd03351 LbH_UDP-GlcNAc_AT UDP- 80.7 3.4 7.4E-05 45.9 6.6 34 421-454 48-94 (254)
228 TIGR01852 lipid_A_lpxA acyl-[a 80.4 3.7 8E-05 45.6 6.7 10 424-433 80-89 (254)
229 cd04198 eIF-2B_gamma_N The N-t 80.4 2.5 5.3E-05 45.6 5.1 67 180-256 85-166 (214)
230 PLN02357 serine acetyltransfer 80.2 2.6 5.7E-05 48.8 5.5 36 419-454 277-313 (360)
231 PRK09677 putative lipopolysacc 80.1 4.5 9.8E-05 43.0 6.9 25 428-452 132-157 (192)
232 cd03357 LbH_MAT_GAT Maltose O- 80.0 4.7 0.0001 41.8 6.9 38 422-459 84-141 (169)
233 PRK13368 3-deoxy-manno-octulos 79.4 3.7 8.1E-05 44.7 6.2 88 206-308 89-187 (238)
234 PRK10092 maltose O-acetyltrans 79.3 4.3 9.3E-05 42.9 6.4 38 422-459 95-152 (183)
235 cd03350 LbH_THP_succinylT 2,3, 79.1 2.8 6E-05 42.0 4.7 31 423-453 34-65 (139)
236 KOG1322 GDP-mannose pyrophosph 79.1 1 2.3E-05 50.8 1.7 51 405-455 284-334 (371)
237 TIGR01852 lipid_A_lpxA acyl-[a 79.0 4.8 0.0001 44.7 7.0 44 411-454 36-93 (254)
238 cd05825 LbH_wcaF_like wcaF-lik 78.9 5.7 0.00012 37.8 6.6 13 423-435 26-38 (107)
239 PRK11132 cysE serine acetyltra 77.3 3.8 8.2E-05 46.0 5.5 28 420-452 193-220 (273)
240 COG1044 LpxD UDP-3-O-[3-hydrox 77.1 3.2 6.9E-05 47.4 4.9 15 438-452 166-180 (338)
241 cd03352 LbH_LpxD UDP-3-O-acyl- 75.8 6.3 0.00014 42.0 6.6 30 423-452 34-64 (205)
242 PRK10502 putative acyl transfe 75.1 9.7 0.00021 40.1 7.7 16 421-436 72-87 (182)
243 cd03354 LbH_SAT Serine acetylt 75.0 4.3 9.3E-05 38.1 4.5 31 424-454 38-71 (101)
244 PRK10191 putative acyl transfe 74.9 5.2 0.00011 40.7 5.3 32 422-453 69-108 (146)
245 PRK09527 lacA galactoside O-ac 74.0 8.7 0.00019 41.3 7.0 15 422-436 97-111 (203)
246 PRK09677 putative lipopolysacc 72.0 9.1 0.0002 40.7 6.6 30 423-452 133-163 (192)
247 PF00132 Hexapep: Bacterial tr 71.5 2.7 5.9E-05 31.5 1.8 27 427-453 2-29 (36)
248 COG0110 WbbJ Acetyltransferase 71.4 5.5 0.00012 41.7 4.8 46 426-483 124-171 (190)
249 PRK12461 UDP-N-acetylglucosami 71.3 5.9 0.00013 44.1 5.2 35 420-454 29-64 (255)
250 cd03354 LbH_SAT Serine acetylt 70.9 8.3 0.00018 36.1 5.4 35 419-453 53-88 (101)
251 TIGR03536 DapD_gpp 2,3,4,5-tet 69.9 10 0.00022 43.3 6.5 44 409-452 190-239 (341)
252 TIGR03535 DapD_actino 2,3,4,5- 68.3 10 0.00022 43.0 6.1 20 439-459 227-246 (319)
253 PRK10191 putative acyl transfe 67.3 9.4 0.0002 38.9 5.2 12 424-435 65-76 (146)
254 TIGR02353 NRPS_term_dom non-ri 67.1 10 0.00023 48.3 6.7 15 422-436 618-632 (695)
255 TIGR03535 DapD_actino 2,3,4,5- 67.0 14 0.00031 41.8 6.9 35 418-452 191-234 (319)
256 TIGR02353 NRPS_term_dom non-ri 65.7 13 0.00028 47.5 7.1 13 440-452 163-175 (695)
257 cd03349 LbH_XAT Xenobiotic acy 65.0 9.7 0.00021 38.6 4.8 36 419-454 72-108 (145)
258 cd03349 LbH_XAT Xenobiotic acy 64.3 7.4 0.00016 39.5 3.8 35 423-457 70-106 (145)
259 PF14602 Hexapep_2: Hexapeptid 63.6 10 0.00022 28.6 3.5 30 439-479 3-32 (34)
260 COG1043 LpxA Acyl-[acyl carrie 63.3 12 0.00025 41.0 5.1 11 422-432 17-27 (260)
261 KOG3121 Dynactin, subunit p25 62.6 5.3 0.00012 39.8 2.2 20 437-456 107-126 (184)
262 COG1043 LpxA Acyl-[acyl carrie 61.5 11 0.00023 41.2 4.5 33 421-453 28-61 (260)
263 cd05825 LbH_wcaF_like wcaF-lik 60.1 15 0.00033 34.9 5.0 31 422-452 58-89 (107)
264 PF07959 Fucokinase: L-fucokin 58.2 17 0.00038 43.4 6.1 41 401-441 282-322 (414)
265 PLN02917 CMP-KDO synthetase 51.7 45 0.00098 38.0 7.8 90 206-308 136-236 (293)
266 COG2171 DapD Tetrahydrodipicol 50.6 21 0.00046 39.7 4.6 13 441-453 198-210 (271)
267 COG1045 CysE Serine acetyltran 48.7 22 0.00047 37.8 4.2 35 419-453 118-153 (194)
268 KOG3121 Dynactin, subunit p25 44.1 15 0.00032 36.8 2.0 36 422-457 86-122 (184)
269 COG2171 DapD Tetrahydrodipicol 42.3 44 0.00096 37.2 5.5 38 422-459 158-205 (271)
270 COG4801 Predicted acyltransfer 39.9 37 0.00081 36.9 4.3 34 425-458 21-54 (277)
271 KOG4042 Dynactin subunit p27/W 34.4 45 0.00098 33.8 3.7 35 419-453 19-57 (190)
272 cd02414 jag_KH jag_K homology 29.4 65 0.0014 28.9 3.6 29 80-108 28-56 (77)
273 KOG4750 Serine O-acetyltransfe 26.9 49 0.0011 35.9 2.6 31 429-459 203-235 (269)
274 PRK13412 fkp bifunctional fuco 26.6 63 0.0014 42.6 4.1 56 403-458 336-393 (974)
275 COG1045 CysE Serine acetyltran 25.1 2.7E+02 0.0059 29.8 7.7 34 422-455 89-137 (194)
276 COG4801 Predicted acyltransfer 23.7 1.1E+02 0.0023 33.6 4.4 59 411-478 24-82 (277)
277 PTZ00397 macrophage migration 23.1 1.1E+02 0.0023 29.6 4.2 49 50-98 66-115 (116)
278 KOG4042 Dynactin subunit p27/W 22.8 93 0.002 31.7 3.5 25 429-453 98-123 (190)
279 COG0110 WbbJ Acetyltransferase 20.8 84 0.0018 32.7 3.1 33 422-454 126-159 (190)
No 1
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=100.00 E-value=7.5e-157 Score=1436.72 Aligned_cols=919 Identities=25% Similarity=0.375 Sum_probs=787.8
Q ss_pred HHhccCCCCCCCCccEEEEccCCHHHHHHHHHHHHHHHHcCCCCCccEEEEeeCCCCCccCChhhHHHHHHHHHHHHhhh
Q 001402 32 LRLSVRHPSRVPTWDAIVLTAASPEQAELYEWQLRRAKRMGRIASSTVTLAVPDPDGQRIGSGAATLNAIFSLAMHYQKL 111 (1084)
Q Consensus 32 ~~~~~~~~~~~~~w~~~v~t~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Dp~g~~iGsGg~Tl~~l~~~~~~~~~~ 111 (1084)
.+.++... -.+.||.||+|+.+++|+..|+| ||++||+|.||||||||+|+|++|++++
T Consensus 21 ~~~~~~~k-~~~~~~~~v~~~~~~~~~~~~~~-----------------~~~~Dp~G~riGsGG~T~~~l~~~~~~~--- 79 (974)
T PRK13412 21 ARIANMKK-LLSLPPNLVDSFHSLEQVDRTEW-----------------FCTSDPVGQKLGSGGGTTWLLEACFRNG--- 79 (974)
T ss_pred HHHHHHhh-ccCCCcHHHHhhcCHhhccccce-----------------EEecCCCCCcccCChHHHHHHHHHHHHh---
Confidence 34555444 48999999999999999999988 9999999999999999999999999998
Q ss_pred cccCCcccccCCCCCCCCccchhhhHHHHHhhhcccchhhhcCCCCCCcCCCCCCCceeeeccCCcCCCCCCChhH-HHH
Q 001402 112 CLDIGPEAIANGGNSGSFMKNEESLSAMVKFMAKKHILLVHAGGDSKRVPWANPMGKVFLPLPYLAADDPDGPVPL-LFD 190 (1084)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~iLllHaGg~S~R~P~~s~~GK~ft~lP~~~~~~~~g~~~~-l~e 190 (1084)
+ ++.+| .+||.+.|+|||||||||||+|+|||+||+|+|||+++++ ++.++++ |++
T Consensus 80 ----~---------------~~~~~---~~~l~~~~~lllHaGG~S~RlP~~s~~GK~f~p~P~~~~~-~g~~l~~~~l~ 136 (974)
T PRK13412 80 ----S---------------PGGDF---TEWLGKEKRILLHAGGQSRRLPGYAPSGKILTPVPVFRWE-RGQRLSQNLLS 136 (974)
T ss_pred ----c---------------cccch---hhhhccccEEEEecCCccccCccccccccccccCCccccC-CCChhHHHHHH
Confidence 2 12233 6899999999999999999999999999999999998733 2334444 667
Q ss_pred HHHHHhhhhhhhcCCCC--eEEEEcCCcccccCccccCcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccc
Q 001402 191 HILAISSCARQALKNEG--GIFTMTGDVLPCFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVD 268 (1084)
Q Consensus 191 ~~l~i~~~~~~~~~~p~--gVlV~sgD~I~~md~~~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~ 268 (1084)
..+.+|.+++. + .|+ ||||+|||++.+||.+++++|++||+|+++++++++|++||||++|+++++ .|+
T Consensus 137 ~~l~~~~~~~~-~-~p~~~g~li~~gDv~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~HGVfv~~~~~~~-------~~~ 207 (974)
T PRK13412 137 LQLPLYERIMS-K-APEGLHTLIASGDVYIRSEQPLQDIPEADVVCYGLWVDPSLATNHGVFVSSRKSPE-------RLD 207 (974)
T ss_pred HHhHHHHHHHh-h-CcccCceEEEecchhhhccccccCCCccCeEEEEeccChhhccCceEEEeCCCChH-------HHH
Confidence 77777777654 2 344 999999999999999999999999999999999999999999999998542 589
Q ss_pred eeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccccccceeccccccccccCCcCccc
Q 001402 269 DLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGKEMSLYEDLVAAWVPAKHDWLM 348 (1084)
Q Consensus 269 ~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~~~~~~~y~DF~~~~~~~~~~y~~ 348 (1084)
+||||||.+|| +++++++.+++|+|+|+|+.++++.|+..... +..+..+++|+|+||++++++
T Consensus 208 ~~LqKps~eel---~a~~~~~~~l~D~g~~~~~~~a~~~L~~~~~~------~~~~~~~~~dlY~Df~~aLg~------- 271 (974)
T PRK13412 208 FMLQKPSLEEL---GGLSKTHLFLMDIGIWLLSDRAVELLMKRSGK------EDGGKLKYYDLYSDFGLALGT------- 271 (974)
T ss_pred HHhcCCCHHHH---HhhhcCCeEEEeeeEEEEChHHHHHHHHhhhc------ccCCcceeeehHHHHHHhcCC-------
Confidence 99999999999 67999999999999999999999999975322 123557999999999999864
Q ss_pred cCCcc-hhHHhhhcCCCccccccCCcccccccCcchhcc------cccccccccccccceeeccCCCCceeeeccEEEec
Q 001402 349 LRPLG-KELVSKLGKQRMFSYCAYELLFLHFGTSSEVLD------HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSS 421 (1084)
Q Consensus 349 ~~~~~-~~~~~aL~~~pi~~l~~p~a~F~h~gt~~e~l~------~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~S 421 (1084)
+++. +..++ ..++..+++++++||||||++|+++ +++.+++.++++++ ++.| .++|+||
T Consensus 272 -~~~~~~~el~---~l~~~i~~L~~~~F~H~GTs~E~l~~~~~~q~~~~~~~~i~~~~~-~~~~---------~~~v~ns 337 (974)
T PRK13412 272 -HPRIGDDELN---ALSVAILPLPGGEFYHYGTSRELISSTLAVQNLVTDQRRIMHRKV-KPHP---------AMFVQNA 337 (974)
T ss_pred -CCCcchhhhc---ccceEEEEcCCceeEEecCcHHHhcCchhHHHHhhhhhhhhcccc-CCCC---------ceEEEee
Confidence 2221 23333 2334466899999999999999998 67777877776652 3333 2589999
Q ss_pred cccCCceeCCCc-EEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEeeeeecCCcceEEEEEeccCCC
Q 001402 422 KIAHGVSIGEDS-LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDN 500 (1084)
Q Consensus 422 vL~~~v~V~~~s-~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~~v~l~~~~~~v~~~~G~~D~ 500 (1084)
+|++++++++++ |||+|+|+++|+||++|||+||+ +|+|+++||+|+|++.||+ ++..||+|+||++||
T Consensus 338 ~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~---------~~~~~~~vP~~~ci~~vpl-~~~~~v~r~ygi~D~ 407 (974)
T PRK13412 338 VLSGKLTAENATLWIENSHVGEGWKLASRSIITGVP---------ENSWNLDLPEGVCIDVVPV-GDRGFVARPYGLDDV 407 (974)
T ss_pred EecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccc---------ccccceecCCCcEEEEEEc-CCCcEEEEEecCCcc
Confidence 999999999985 59999999999999999999997 3779999999999999999 788999999999999
Q ss_pred CCCCCCCCC-cccCCChHHHHHHhCCCCcccccCCCCCccccccccccccccchhhHH-HHHHHhcCCCCCcCccccccc
Q 001402 501 PKNSLTKDG-TFCGKPWQKVWHDLGIQESDLWSSTGSQEKCLWNAKIFPILSYSEMLT-LATWLMGLSDHKTGFLLPLWK 578 (1084)
Q Consensus 501 ~k~~~~~~~-t~~g~~~~~~l~~~gi~~~dlw~~~~~~~~~Lw~A~LFPV~~~~e~l~-~~~wm~~~~~~~~~~~~~~W~ 578 (1084)
||++++++. +|||+||.+||+.+||+++|+|++ .+|||||+|||||++.|++. +++||++.....+ ..++|+
T Consensus 408 ~K~s~~~~~~~~~G~~~~~~l~~~gl~~~~l~~~----~~~Lw~A~LFPv~~~~e~~~~~~~~m~~~~~~~~--~~~lw~ 481 (974)
T PRK13412 408 FKGALADGKTTWFGRPFLEWMEARGLSWPDLKGR----TDDLQAAHLFPVVTSVEELGAVLRWMLSEPSLEE--GKEIWL 481 (974)
T ss_pred cccccccccCeecCccHHHHHHHcCCCHHHhcCC----ccchhccccccccCcHHHHHHHHHHHhhcccccc--chhhhc
Confidence 999998554 699999999999999999999953 38999999999999999976 8999987554333 457899
Q ss_pred ccccccHHHHhccCChHHHhhhcchhhhhhHHHHHHHHHhhhhhhhhhhHHHHHHhccccchhhHHHHhhhhcCcccCCC
Q 001402 579 NSRRVSLEELHRSIDFSEMCTGSSNHQADLAAGIAKACINYGMLGRNLSQLCEEILQKELSGVDICKDILDLCPRLQDQN 658 (1084)
Q Consensus 579 ~~~rlS~~Ei~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 658 (1084)
+++|+|++|+++++|+++||++|+ .+++.||+.+++|+++++||||++.+++.++++..|..++.+..++
T Consensus 482 ~~~r~S~~e~~~~~d~~~l~~~r~----------~~~~~~~~~l~~n~~~~~~~ql~~~~~~~~~~~~~l~~~~~l~~~~ 551 (974)
T PRK13412 482 RSEKLSADEISAYANLARLYAQRE----------AFRKANWRALAANHEKSVFYQLDLADAAEDFVRLLLDMPEILPEDA 551 (974)
T ss_pred ccceecHHHHhhccCHHHHHHHHH----------HHHHhhHHHHHHhhhhhhhhhhhHHHHHHHHHHhcCCCcccchhhc
Confidence 999999999999999999999887 6666799999999999999999999999999999999988888888
Q ss_pred CCCcc-hhhhHHHHHHHHHhcCchhhhhHHHHHHHHHhHHHHHHHHhhccccccccccccccccccccCCCCCCCCCCCC
Q 001402 659 SKILP-KSRAYQAQVDLLRACKEETTASELEHKVWAAVADETASAIKYGFREYLLEPLSRGSSAYQNKNDDGFVDHPFQP 737 (1084)
Q Consensus 659 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~~~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 737 (1084)
|...+ .+|||++++..+ +|+. ....|+++|..+++++..+. ..+++. |..++|.||.
T Consensus 552 ~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~f~~~~~~~~~~~--------~~~~~~-------~~~~v~~~~~--- 609 (974)
T PRK13412 552 PLMLRIHNRMFRARILKL--SGAR--YREEEQAAFRLLRDGLLDGA--------YPRKQT-------PKLEVYSDQI--- 609 (974)
T ss_pred ccccchhHHHHHHHHHHh--hccc--cchHHHHHHHHHHHHhhhcc--------cccccC-------CCcccccCcE---
Confidence 88888 889999986555 5643 34779999998888876544 233333 6788888886
Q ss_pred CeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCC-ceeeecCCCCCCCCC
Q 001402 738 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGN-QLHIEDLTPIATPFD 816 (1084)
Q Consensus 738 ~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~-~~~~~~l~~l~~p~~ 816 (1084)
+++++|+||||+|||||+|||++.+||.|+|+||++++++||.++++++++..|++.+.+.. .+.+.+.+++.++..
T Consensus 610 --~~~~aPgRVnLiGghTDtPpy~~ynGG~VLn~AId~~g~~pi~v~v~~~~d~~irl~S~d~~~~~~v~~~~~l~~~~~ 687 (974)
T PRK13412 610 --VWGRSPVRIDLAGGWTDTPPYCLYSGGNVVNLAIELNGQPPLQVYVKPCSEPHIVLRSIDLGAMEVVRTNEELRDYKK 687 (974)
T ss_pred --EEEeCceEEeecccCcCCCcccCcCCcEEEEEEEeCCCCccEEEEEEECCCCeEEEEECCCCCceEEecchhhccccc
Confidence 88999999999999999999999999999999999999999999999998888988875543 333455566666666
Q ss_pred CCChHHHHHHHHHHhhhhhh-----------hcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHH
Q 001402 817 HNDPFRLVKSALLVTGVIHE-----------KLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNEN 884 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~-----------~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~e 884 (1084)
+++|++|+|+|+...|++++ ... ...|++|++.|+||.|+|||||||+++|++.|++++++.++++++
T Consensus 688 ~~~~~~~~K~al~~~G~~~~~~~~~~~~l~e~l~~~G~G~~I~i~s~IP~GsGLGSSAAlavA~l~AL~~~~g~~ls~~e 767 (974)
T PRK13412 688 VGSPFSIPKAALCLAGFAPRFSAESYASLEEQLKAFGSGIEITLLAAIPAGSGLGTSSILAATVLGAISDFCGLAWDKNE 767 (974)
T ss_pred ccchHhhhhhhheecccccccccchhHHHHHHHHhcCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 77899999999987665441 111 126899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHH
Q 001402 885 VARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVV 964 (1084)
Q Consensus 885 La~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~ 964 (1084)
|+++|..+|+.+++++|||||+++++||+++++..++......+++++.+.+...+++.+++|+|||++|.|++++++|+
T Consensus 768 la~~A~~~E~~lhg~~g~qDq~~a~~GG~~~i~~~~~~~~~~~v~~L~~~~~~~~eLe~~LlL~yTGitR~T~~iV~~Vv 847 (974)
T PRK13412 768 ICNRTLVLEQLLTTGGGWQDQYGGVLPGVKLLQTGAGFAQSPLVRWLPDSLFTQPEYRDCHLLYYTGITRTAKGILAEIV 847 (974)
T ss_pred HHHHHHHHHHHHCCCCchhhhhhHhcCCeEEEEecCCcccCcceeecCcchhhhhhccCcEEEEECCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999998866543333456777766555566788999999999999999999998
Q ss_pred HHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCc
Q 001402 965 TRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGG 1044 (1084)
Q Consensus 965 ~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGg 1044 (1084)
+.+..+++.....+++|++++.++.+||++||++.||++|+++|++++.|.+++++|.+++|++.++++++|+|+||||+
T Consensus 848 ~~~~~~~~~~~~~l~~ig~La~ea~~ALe~gD~~~LG~LMn~~w~ll~~L~~GVSnp~LD~Li~~A~~gAlGaKLTGAGG 927 (974)
T PRK13412 848 RSMFLNSTAHLQLLHEMKAHALDMYEAIQRGEFEEFGRLVGKTWEQNKALDSGTNPAAVEAIIELIKDYTLGYKLPGAGG 927 (974)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHcCCcEEEecccCc
Confidence 88877766666788999999999999999999999999999999999999888999999999999988999999999999
Q ss_pred cceeEEEEcChhhHHHHHHHHHhcCCCCcEEE-EeecCCC
Q 001402 1045 GGFALLLAKDAESATELRRMLEKDSNFNSEVY-NWNIYLE 1083 (1084)
Q Consensus 1045 GG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~-~~~i~~~ 1083 (1084)
|||+++++++++.+++++++|++.......+| +++++.+
T Consensus 928 GGcvI~Lak~~~~a~~I~~~L~~~~~~~~~~~~~~~l~~~ 967 (974)
T PRK13412 928 GGYLYMVAKDPGAAERIRKILTENAPNPRARFVDMSLSDK 967 (974)
T ss_pred ccEEEEEECChhhHHHHHHHHHhcccCCceeEEEEEECCC
Confidence 99999999888899999999998766666555 7777654
No 2
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.6e-86 Score=729.26 Aligned_cols=847 Identities=23% Similarity=0.310 Sum_probs=683.3
Q ss_pred CCCCeEEEEcCCcccccCccccC-c-CCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhc
Q 001402 204 KNEGGIFTMTGDVLPCFDASTMI-L-PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAK 281 (1084)
Q Consensus 204 ~~p~gVlV~sgD~I~~md~~~~~-~-~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~ 281 (1084)
.+|++|++|++|++......+-+ + +--+..++++|.++.+|.+|||+++|++| .|.++.+..++.+++
T Consensus 4 ~Sp~~i~~C~s~ll~~ipa~~gi~wdsfRga~~ial~gs~a~a~nhgV~lsDPqg---------lvldi~~Qgaeaeiq- 73 (948)
T KOG4644|consen 4 ASPEDIGSCGSALLALIPAAEGICWDSFRGALTIALEGSLADANNHGVLLSDPQG---------LVLDITLQGAEAEIQ- 73 (948)
T ss_pred CCcccccchhHHHHhhccccCCcchhhcCCceEEEcCCchhhhhceEEEEecCcc---------ceeeeeeccchhhhh-
Confidence 36899999999998766655443 2 22344588999999999999999999998 899999999998887
Q ss_pred ccccCCCCcceeeeeeEEecHHHHHHHHHHhcC-----CCCcccccccccccceecccccccc--ccCCcCccccCCc--
Q 001402 282 NHAILDDGRALLDTGIIAVRGKAWEELVMLSCS-----CPPMVSELLKSGKEMSLYEDLVAAW--VPAKHDWLMLRPL-- 352 (1084)
Q Consensus 282 ~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~-----~~d~g~d~i~~~~~~~~y~DF~~~~--~~~~~~y~~~~~~-- 352 (1084)
.|+.+++++....|+++|+-...+++|.++.+ |.+.+.|.++.+.++++|+|.+... .++++||+-.+|.
T Consensus 74 -rcvrpdgri~~~nGvVF~svesaerllathvsppldaCs~i~~dSgarpvqlslffdilHc~ae~V~redflvgrppel 152 (948)
T KOG4644|consen 74 -RCVRPDGRIKGGNGVVFDSVESAERLLATHVSPPLDACSKIAADSGARPVQLSLFFDILHCGAEIVGREDFLVGRPPEL 152 (948)
T ss_pred -cccCCCcccccCceEEEEeeechhhhhhcccCcchhhhhHhhcccCCCcchhhhhhhhhhhhhhcccchhhcccCCccc
Confidence 68999999999999999999999999998853 6778889988899999999998654 4688899887763
Q ss_pred --chh------------HHhhhcCCCccccccCCccccccc-CcchhcccccccccccccccceeeccCCCCceeeeccE
Q 001402 353 --GKE------------LVSKLGKQRMFSYCAYELLFLHFG-TSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAV 417 (1084)
Q Consensus 353 --~~~------------~~~aL~~~pi~~l~~p~a~F~h~g-t~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~ 417 (1084)
+|+ +|.-++.+|+-..++|...+..|. +..|++.+|+--+.. ..++.++.+.....+..++.
T Consensus 153 gqgdaD~agylqsaraqlWke~kdq~L~Ma~l~q~S~s~~TssaseFL~sltlpga~---gaQi~Hsqveeqqilaa~n~ 229 (948)
T KOG4644|consen 153 GQGDADAAGYLQSARAQLWKEEKDQELNMADLPQDSISGFTSSASEFLESLTLPGAK---GAQIDHSQVEEQQILAADNK 229 (948)
T ss_pred cCCcchhhhHHHHHHHHHHHHhhcCccceeecCCCcccccchhHHHHHHhccCCCCc---cccccchhhhhheeeecCCc
Confidence 232 344466777666677877666554 367899988853331 12455555554445677888
Q ss_pred EEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCC-CCCCCCCcceEeCCCcEeeeeecCCcceEEEEEec
Q 001402 418 VLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEA-GSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCG 496 (1084)
Q Consensus 418 V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~-~~~~~~~~~~~iP~g~~i~~v~l~~~~~~v~~~~G 496 (1084)
+..+.+...|..|+||+++||++.+..+||.+|++.+..-..+. +..- .-.++.+..++ ..+.+....++++.|
T Consensus 230 l~~c~~dG~v~~gpgsvlqhcH~e~piHigaGciv~gLdaAhskalhgr-elrdL~Lqghh----t~lh~~Pg~AfTllG 304 (948)
T KOG4644|consen 230 LSGCEFDGEVAGGPGSVLQHCHFEEPIHIGAGCIVLGLDAAHSKALHGR-ELRDLFLQGHH----TLLHEFPGAAFTLLG 304 (948)
T ss_pred eeeeEecccccCCCccccccccccCcceeeeeeEEeccchhhhhhhcch-HHHHHHhccch----hhhccCCchhheeee
Confidence 99999999999999999999999999999999999998765422 1110 01235555444 345666778899999
Q ss_pred cCCCCCCCCCCCCcccCCChHHHHHHhCCCCcccccCC-CCCccccccccccccccchhh--HHHHHHHhcCCCCCcCcc
Q 001402 497 LHDNPKNSLTKDGTFCGKPWQKVWHDLGIQESDLWSST-GSQEKCLWNAKIFPILSYSEM--LTLATWLMGLSDHKTGFL 573 (1084)
Q Consensus 497 ~~D~~k~~~~~~~t~~g~~~~~~l~~~gi~~~dlw~~~-~~~~~~Lw~A~LFPV~~~~e~--l~~~~wm~~~~~~~~~~~ 573 (1084)
.-|.|.. .+.++++|.+|++||+.+|.+.+|+|++. -+.+.|+-.||||||.|...+ ..+.+||++ .-....+.
T Consensus 305 rlDSwer--qgag~~lnl~~SeFF~~~g~rawdlwdpeT~paE~c~~~akLfpviH~~re~gpQDll~~ld-h~edg~ea 381 (948)
T KOG4644|consen 305 RLDSWER--QGAGNVLNLKLSEFFDFFGARAWDLWDPETCPAEECFIKAKLFPVIHEKREEGPQDLLNALD-HIEDGFEA 381 (948)
T ss_pred ccchHhh--cCCCceecccHHHHHHHhhhhhhcccCcccCchHHHhhhhhcccccChhhhcCHHHHHHHHH-HHHhhhHH
Confidence 9999984 46789999999999999999999999886 356679999999999998766 558999975 22334678
Q ss_pred cccccccccccHHHHhccCChHHHhhhcc---------------hhhhhhH-HHHHHHHHhhhhhhhhhhHHHHHHhccc
Q 001402 574 LPLWKNSRRVSLEELHRSIDFSEMCTGSS---------------NHQADLA-AGIAKACINYGMLGRNLSQLCEEILQKE 637 (1084)
Q Consensus 574 ~~~W~~~~rlS~~Ei~~~~d~~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1084)
++.|+.+||+|++++..+.|-.+-+.|+. +.|.+|. -++.++....++.+-....+++...+..
T Consensus 382 ~ka~ras~~i~~eQlk~cld~aa~laq~~DiFf~ealhka~h~leaRqdLSi~~LI~aa~ke~cpg~L~a~lDQiaagag 461 (948)
T KOG4644|consen 382 FKARRASLDIIEEQLKKCLDHAANLAQLLDIFFGEALHKADHELEARQDLSICNLIDAASKEACPGILKALLDQIAAGAG 461 (948)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhccchhHHHHHhhcchhhhhhHhhhhcCchHHHHHHHHHhhcCC
Confidence 99999999999999999988444332221 1466666 4667888888888888888888888888
Q ss_pred cchhhH-----HHHhhhhcC----cccCCCCCCcchhhhHHHHHHHHHhcCchhh---hhHHHHHH-HHHhHHHHHH-HH
Q 001402 638 LSGVDI-----CKDILDLCP----RLQDQNSKILPKSRAYQAQVDLLRACKEETT---ASELEHKV-WAAVADETAS-AI 703 (1084)
Q Consensus 638 ~~~~~~-----~~~~l~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~e~~~-~~~~~~~~~~-a~ 703 (1084)
||++.. +++.|+|++ ++|.+++.+..|.|.|.+ | ++||... +...|+.+ |.+.|..|++ |+
T Consensus 462 dP~laaqaiac~ad~Lgc~adGkGGLRnGPAaNPe~~kpfs~----l-ecgdlaa~~eala~E~dKnWlS~Pa~liRAAR 536 (948)
T KOG4644|consen 462 DPELAAQAIACAADALGCAADGKGGLRNGPAANPEFEKPFSL----L-ECGDLAADFEALADEIDKNWLSEPAHLIRAAR 536 (948)
T ss_pred ChHHHHHHHHHHHHHhhhhhcCCCcccCCCCCCchhcCchhh----h-cccchhhhHHHHHHHHHhhhhcChHHHHHHHH
Confidence 987653 688999998 455677777889999998 6 6888554 66777665 9999999955 56
Q ss_pred hhcccccccccccccccc-ccccCCCCCCCCCCCCC-eEEEEeceEEeeeccccccCCcccCCC-ceEEEEeeecCcccc
Q 001402 704 KYGFREYLLEPLSRGSSA-YQNKNDDGFVDHPFQPR-TVKVELPVRIDFAGGWSDTPPWSLERA-GCVLNVAISLESSLP 780 (1084)
Q Consensus 704 ~y~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~v~v~aP~Ri~L~Ge~tD~~py~~~~G-G~Vl~~AI~l~~~~p 780 (1084)
|||++.|++++..+++.+ |+ +...+++|-.++ ||++.||+|||++|||+|+||+.++.+ |.|+++||.++++.|
T Consensus 537 H~Ega~Qi~IRea~~~a~hf~---S~e~~elPg~g~s~Viae~PaRiDF~GGW~DTPPiafel~n~AVlglAiklDGk~P 613 (948)
T KOG4644|consen 537 HLEGAAQICIREATDEACHFR---SLEIGELPGAGPSTVIAEAPARIDFFGGWLDTPPIAFELDNAAVLGLAIKLDGKNP 613 (948)
T ss_pred HhhhhHHHHHHHHHHHHHHHh---HhhhccCCCCCCceEEEecceeeeecccccCCCCeeEeccccceeeeEEEecCCCc
Confidence 899999999999998774 44 556667887776 999999999999999999999999976 899999999999999
Q ss_pred eeEEEEEcCCCc----EEEEeC-CCCcee---eecCCCCCCCCCCCChHHHHHHHHHHhhhhhh--------hcc--ccc
Q 001402 781 IGTIIETTKMSG----VLISDD-AGNQLH---IEDLTPIATPFDHNDPFRLVKSALLVTGVIHE--------KLI--ESM 842 (1084)
Q Consensus 781 i~v~v~~~~~~~----i~i~s~-~~~~~~---~~~l~~l~~p~~~~~~~~lvkaal~~~g~~~~--------~~~--~~~ 842 (1084)
|++.+++++++. |.+.-| .+..++ ..|+.|+.+|+. +..+.++++.+.++++- .+. .-.
T Consensus 614 Iga~a~kI~ePelwlai~~rQDel~V~I~crclaDlrD~cqpHa---~gal~~aafiCA~IVhl~sel~i~d~~~k~f~~ 690 (948)
T KOG4644|consen 614 IGAFAEKIDEPELWLAIEIRQDELFVHIKCRCLADLRDLCQPHA---KGALEAAAFICACIVHLGSELNILDIFEKLFCC 690 (948)
T ss_pred cchhhhcCCCchheeeeeeeccceEEEEEeehhhhhHHhhccCC---CchhhhhhhhheeeeeccchhhHHHHHHHHhcC
Confidence 999999988774 333322 222222 235667777754 44577777776655431 121 236
Q ss_pred CEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHH----HHHHHHhcCCCCcccchhhhcccceEEEec
Q 001402 843 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARL----VLLLEQLMGTGGGWQDQIGGLYPGIKFTSS 918 (1084)
Q Consensus 843 G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~l----a~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~ 918 (1084)
||+|+.+|++|.|||||+||+++..+++|+....|.....+.|.+. ++++||+++|+||||||.++++.|++.-++
T Consensus 691 GfeihT~SdLPHGSGLGTSSIlA~TaLaAi~~aagr~~gTeaLiHailHtvlrlEQilTTGGGWQDQ~G~im~GIK~gr~ 770 (948)
T KOG4644|consen 691 GFEIHTSSDLPHGSGLGTSSILACTALAAICAAAGRADGTEALIHAILHTVLRLEQILTTGGGWQDQCGAIMEGIKKGRC 770 (948)
T ss_pred ceEeeccccCCCCCCcchHHHHHHHHHHHHHHhhccccchhHhHHHHHHHHHHHHHHhhcCCchhhhccchhhhhhhccc
Confidence 8999999999999999999999999999999999988777766554 455999999999999999999999998777
Q ss_pred CCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHH
Q 001402 919 FPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVD 998 (1084)
Q Consensus 919 ~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~ 998 (1084)
+...+..++++++.+|+++.++++.++++||||+||.++++|++|.+.|+.+-+..++..+.+.+.++++.+.+++|.++
T Consensus 771 rael~~~ie~eeiTipe~f~ekL~dhLLLVYTGKTRLAkNLLQdViRn~far~~a~~Q~ah~l~~~tdecAegf~kGsl~ 850 (948)
T KOG4644|consen 771 RAELNHGIEHEEITIPEEFREKLEDHLLLVYTGKTRLAKNLLQDVIRNFFARCKATKQKAHKLAEATDECAEGFEKGSLE 850 (948)
T ss_pred hhhccCCceeeeecCCHHHHHHHhhcEEEEEeCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCcHH
Confidence 76666778889999999999999999999999999999999999999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCe--EEEcCCCccceeEEEEcChhhHHHHHHHHHhcCCC-CcEE
Q 001402 999 ELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCG--YKLVGAGGGGFALLLAKDAESATELRRMLEKDSNF-NSEV 1075 (1084)
Q Consensus 999 ~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~G--aklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f-~v~v 1075 (1084)
.+|++++.+|++++-|.++|.++.+.+|++.+.....| ....|||+|||+|.+.+++.+.+.+...|.++.+| +..+
T Consensus 851 LlgecL~~YweqKk~MapgCEPl~Vr~lldmLaph~hgesgw~AGAGGGGFiYLl~kEpqqkeaiEa~Lak~eg~gN~s~ 930 (948)
T KOG4644|consen 851 LLGECLEHYWEQKKFMAPGCEPLNVRELLDMLAPHKHGESGWAAGAGGGGFIYLLIKEPQQKEAIEAFLAKNEGFGNMSC 930 (948)
T ss_pred HHHHHHHHHHHhhhccCCCCCCCcHHHHHHHhccccccccchhccCCCCcEEEEEecCCCCHHHHHHhhccCCCcCceeE
Confidence 99999999999999999999999999999998864444 34899999999999999999999999999988776 5567
Q ss_pred EEeecCCC
Q 001402 1076 YNWNIYLE 1083 (1084)
Q Consensus 1076 ~~~~i~~~ 1083 (1084)
+-+.|+.+
T Consensus 931 Hlieid~e 938 (948)
T KOG4644|consen 931 HLIEIDLE 938 (948)
T ss_pred EEEEecCC
Confidence 76666654
No 3
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=100.00 E-value=8.6e-75 Score=674.08 Aligned_cols=390 Identities=36% Similarity=0.538 Sum_probs=333.7
Q ss_pred cCCCCCCcCCCCCCCceeeeccCCcCCCCCCChhHH----HHHHHHHhhhhhhhcCCCCeEEEEcCC-cccccCccccCc
Q 001402 153 AGGDSKRVPWANPMGKVFLPLPYLAADDPDGPVPLL----FDHILAISSCARQALKNEGGIFTMTGD-VLPCFDASTMIL 227 (1084)
Q Consensus 153 aGg~S~R~P~~s~~GK~ft~lP~~~~~~~~g~~~~l----~e~~l~i~~~~~~~~~~p~gVlV~sgD-~I~~md~~~~~~ 227 (1084)
|||||||+|+||+|||+|||||+. .+.+|+++| ++.++.++.+++.++ |+||||+||| ++.+++...+.+
T Consensus 1 aGG~SrRlP~~s~~GK~Ft~lP~~---~p~~~~~~L~~~ll~l~~~~~~~~~~~~--ppGv~V~s~D~vl~~~~~~~~~~ 75 (414)
T PF07959_consen 1 AGGYSRRLPNYSACGKAFTPLPVE---NPQGPVSALFDNLLELKLAMYIDFPPGM--PPGVLVCSGDMVLSVPDDPLIDW 75 (414)
T ss_pred CCCccccCCccccccceeeccccC---CCCCcchhhhhhHHHHHHHHHHHHHhhh--hcceEEEecccccccCccccCCC
Confidence 799999999999999999999993 556666554 556667777777665 8899999999 777777778889
Q ss_pred CCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHH
Q 001402 228 PEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 228 ~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
+++++++++||+++++|++||||++|++++++++++...|.+||||||+++|++++|+.+++.+++|+|+|+|++++++.
T Consensus 76 ~~~g~~~la~p~~~~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~~~av~~~~~~~ldsG~~~~s~~~~e~ 155 (414)
T PF07959_consen 76 DEPGVTALAHPSSLEYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRASGAVLPDGNVLLDSGIVFFSSKAVES 155 (414)
T ss_pred CCCCEEEEEeeCCHHHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHhCCcccCCCcccccccceeccHHHHHH
Confidence 99999999999999999999999999999877788888899999999999999999999999999999999999999999
Q ss_pred HHHHhcC-----CCCcccccccccccceecccccccccc-CCcCccccC--Ccc---------hhHHhhhcCCCcccccc
Q 001402 308 LVMLSCS-----CPPMVSELLKSGKEMSLYEDLVAAWVP-AKHDWLMLR--PLG---------KELVSKLGKQRMFSYCA 370 (1084)
Q Consensus 308 ll~~~~~-----~~d~g~d~i~~~~~~~~y~DF~~~~~~-~~~~y~~~~--~~~---------~~~~~aL~~~pi~~l~~ 370 (1084)
|++++.. +..++. ..+.++|+++|+||+++|++ ++.+|.+.. ... ..+|..|+..|+-.+++
T Consensus 156 L~~~~~~~~~~~~~y~~~-~g~~~~ei~lY~Dfl~aLg~~~t~e~~~~~~~~~~~~~~l~~aR~~l~~~Lr~~~l~vv~l 234 (414)
T PF07959_consen 156 LLYLHVSPPLDLCTYYGL-SGALPCEIDLYGDFLQALGPDATEEYPENTSNVLKEESELREARQKLWKLLRGTPLNVVPL 234 (414)
T ss_pred HHHhccCchHhhhhhhhh-cCCccceehHHHHHHHHhcCCccccCccccCCCcchhHHHHHHHHHHHHHhhhcccccccc
Confidence 9998853 344455 66778899999999999986 344543322 221 24566678888777889
Q ss_pred CCcccccccCcchhccccccccccc-ccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCC
Q 001402 371 YELLFLHFGTSSEVLDHLSGDVSGL-VGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSL 449 (1084)
Q Consensus 371 p~a~F~h~gt~~e~l~~l~~d~~~l-~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~ 449 (1084)
|+++|||+||++|+++||+.+ +.+ ..+.++.+++....+.+..+++|+||+|+++|+|+++|+||||+|+++|+||+|
T Consensus 235 ~~~~F~H~GTs~E~L~~lt~~-~~l~~~~~~~~~~~~~~~~~~~~~~~VinSil~~~~~vg~~svIe~s~l~~~~~IG~~ 313 (414)
T PF07959_consen 235 PNGKFYHFGTSREYLEHLTSD-SELGIMRRKFSHSPATTPSDSEASSCVINSILEGGVSVGPGSVIEHSHLGGPWSIGSN 313 (414)
T ss_pred CCceEEEecCCHHHHHhhccC-cccccceeeeeccccccccccCCCeeEEEeEecCCceECCCCEEEeeecCCCCEECCC
Confidence 999999999999999999998 443 223345666766556788999999999999999999999999999999999999
Q ss_pred CeEeccccCCCCCCCCCCCcceEeCCCcEeeeeecCCcceEEEEEeccCCCCCCCCCCCC-cccCCChHHHHHHhCCCCc
Q 001402 450 SIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYCGLHDNPKNSLTKDG-TFCGKPWQKVWHDLGIQES 528 (1084)
Q Consensus 450 ~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~~v~l~~~~~~v~~~~G~~D~~k~~~~~~~-t~~g~~~~~~l~~~gi~~~ 528 (1084)
|||+|+.+.... . .....||+++|++.|++.|+..||+++||++||+|++++.+. ||||+||.+||++|||+++
T Consensus 314 cIisGv~~~~~~--~---~~~~~lpd~~~~~~v~l~g~~~~v~~~~Gv~D~~K~~~~~~~~tf~g~~~~~~l~~~gl~~~ 388 (414)
T PF07959_consen 314 CIISGVDINSWS--I---LPGLTLPDGVCLHSVRLGGSKRYVTRVFGVDDNLKGSVKDDSLTFLGRPWSEFLERTGLRPS 388 (414)
T ss_pred CEEECCcccccc--c---ccCcccCCceEEEEEEeCCCceEEEEEeccCcchhhccccccceECCCcHHHHHhHhCCCHH
Confidence 999999986531 0 012499999999999999999999999999999999988654 8999999999999999999
Q ss_pred ccccCCCCCccccccccccccccchh
Q 001402 529 DLWSSTGSQEKCLWNAKIFPILSYSE 554 (1084)
Q Consensus 529 dlw~~~~~~~~~Lw~A~LFPV~~~~e 554 (1084)
|+|++++.+++|||||||||||++.|
T Consensus 389 dlw~~~~~~~~~Lw~ArLFPV~~~~e 414 (414)
T PF07959_consen 389 DLWDSGDPSERSLWNARLFPVCSSSE 414 (414)
T ss_pred HccCCCCcchhhhhcCccccccCCCC
Confidence 99999777789999999999999865
No 4
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only]
Probab=100.00 E-value=1.8e-46 Score=396.62 Aligned_cols=314 Identities=28% Similarity=0.430 Sum_probs=272.2
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
++.++|.||.|.||+||++|||..|||.|||++||+|.+ +++.+..+..|++..+... .+.++..+. +.
T Consensus 2 ii~raPLRItfgGGGTDvepy~~k~GGaVlnatIdky~y----~~i~~~~d~~I~~~~~~~~--~v~~~~~~~-----h~ 70 (333)
T COG2605 2 IISRAPLRITFGGGGTDVEPYCSKHGGAVLNATIDKYIY----VTIEKGFDDEIRVRYDRTE--FVKSYLENE-----HK 70 (333)
T ss_pred cccccceEEEecCCCcCchHHHHhcCCEEEEeeeeeEEE----EEEccCCCceEEEecchHH--hhhhhHhhc-----Cc
Confidence 355799999999999999999999999999999999976 7777777777777633221 112222221 12
Q ss_pred hHHHHHHHHHH--hhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hc
Q 001402 820 PFRLVKSALLV--TGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM 896 (1084)
Q Consensus 820 ~~~lvkaal~~--~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~~ 896 (1084)
.++++++.. +++ -..+.++|+..+++|.|+||||||+++||++.|+..+-|..+++++|++.|..+|. .+
T Consensus 71 --~~~~~~l~r~~l~~-----~g~~~~el~~~~D~P~GSGLGSSSa~vvaLl~a~~~~kg~~~~~~~LA~eAy~IER~~l 143 (333)
T COG2605 71 --PLVVESLKRDFLEF-----NGGTPIELHTQSDAPPGSGLGSSSAFVVALLNALHAWKGESLGPYELAREAYEIEREDL 143 (333)
T ss_pred --hHHHHHHHHHHHhh-----cCCCceEEEEecCCCCCCCCCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence 267777763 332 11223999999999999999999999999999999999999999999999999998 68
Q ss_pred CCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHH
Q 001402 897 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 976 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~ 976 (1084)
+..+|+|||++++|||++++.+.+.. ++.+.|+.+..++..+++.+++|+|||.+|.+.+++.+++++...++++..+
T Consensus 144 ~~~gG~QDqYaaA~GGFnfMEf~~~~--~V~v~pL~i~~e~~~Ele~~~lL~yTGi~R~Ss~V~~dQ~~~~~~~~~~~~e 221 (333)
T COG2605 144 KIVGGKQDQYAAAFGGFNFMEFRGNG--EVVVNPLRINRERTAELEARLLLYYTGITRQSSEVIEDQVRNVVDGDEETLE 221 (333)
T ss_pred ccccccccHHHHHhCCceEEEEcCCC--cEEEeecccchhHHHHHHhceEEEEeccccchhHHHHHHHHHhhcccHHHHH
Confidence 99999999999999999999987653 3678999999999999999999999999999999999999888888888889
Q ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcCh
Q 001402 977 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 977 ~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~ 1055 (1084)
.+++|++.+.++.+||..+|+.+||++|+..|+.++.+...++++.+|.|++.|.+ |++|+|++|||+|||++.+|+.
T Consensus 222 ~~~~mk~~A~~~~~al~~nd~~~f~~~l~~gW~~KK~ls~~ISN~~IDriy~~A~~~GA~~gKl~GaG~gGFllf~~~p- 300 (333)
T COG2605 222 ALHEMKALAYEMKDALVRNDIPEFGQILDRGWEAKKKLSSRISNDAIDRIYELALKNGAYGGKLSGAGGGGFLLFFCDP- 300 (333)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHHhcCchhceeeccCCccEEEEEeCc-
Confidence 99999999999999999999999999999999999999989999999999999998 9999999999999999999984
Q ss_pred hhHHHHHHHHHhcCCCCcE
Q 001402 1056 ESATELRRMLEKDSNFNSE 1074 (1084)
Q Consensus 1056 ~~ae~i~~~L~~~~~f~v~ 1074 (1084)
....++.++|.+..++-+.
T Consensus 301 ~k~~~l~r~l~~~~~~~~~ 319 (333)
T COG2605 301 SKRNELARALEKEQGFVVD 319 (333)
T ss_pred cchHHHHHHHHHhcCCeEE
Confidence 8889999999987555433
No 5
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.2e-45 Score=406.26 Aligned_cols=271 Identities=17% Similarity=0.226 Sum_probs=233.8
Q ss_pred cccchhhhcCCCCCCcCC-CCCCCceeeeccCC-c--CC-CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc
Q 001402 145 KKHILLVHAGGDSKRVPW-ANPMGKVFLPLPYL-A--AD-DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC 219 (1084)
Q Consensus 145 ~~~iLllHaGg~S~R~P~-~s~~GK~ft~lP~~-~--~~-~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~ 219 (1084)
+.++|.-|.|.. ||| ....+..++.+|.+ + ++ |+.|+++++||+++.+... .|++|+|+||||||+
T Consensus 62 ~~~SL~~Hi~~G---~~w~l~~~~~~v~ilp~~~~~~~~~wy~Gtadai~Qnl~~i~~~------~~eyvlIlsgDhIYk 132 (393)
T COG0448 62 KSHSLNDHIGRG---WPWDLDRKNGGVFILPAQQREGGERWYEGTADAIYQNLLIIRRS------DPEYVLILSGDHIYK 132 (393)
T ss_pred chhHHHHHhhCC---CccccccccCcEEEeCchhccCCCcceeccHHHHHHhHHHHHhc------CCCEEEEecCCEEEe
Confidence 567999999999 999 55688888888876 4 32 8999999999999999863 699999999999999
Q ss_pred cCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeee
Q 001402 220 FDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDT 295 (1084)
Q Consensus 220 md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~ 295 (1084)
|||++|. ..+|++|+++.++|.++|++|||+.+|+++ +|++|.|||... ++...++||
T Consensus 133 mDy~~ml~~H~~~gadiTv~~~~Vp~~eas~fGim~~D~~~---------~i~~F~eKp~~~---------~~~~~laSM 194 (393)
T COG0448 133 MDYSDMLDFHIESGADVTVAVKEVPREEASRFGVMNVDENG---------RIIEFVEKPADG---------PPSNSLASM 194 (393)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEECChHhhhhcCceEECCCC---------CEEeeeeccCcC---------Ccccceeee
Confidence 9999995 799999999999999999999999999998 899999999982 245669999
Q ss_pred eeEEecHHHHHHHHHHhc----CCCCcccccccc-cccceec-cccccccccCCcCccccCCcchhHHhh----hcCCCc
Q 001402 296 GIIAVRGKAWEELVMLSC----SCPPMVSELLKS-GKEMSLY-EDLVAAWVPAKHDWLMLRPLGKELVSK----LGKQRM 365 (1084)
Q Consensus 296 Giy~f~~~~~~~ll~~~~----~~~d~g~d~i~~-~~~~~~y-~DF~~~~~~~~~~y~~~~~~~~~~~~a----L~~~pi 365 (1084)
|||+|+++.|.++|+.++ +.||||||++|. ..+..+| |+|.. ||+|++++++||+| |...|.
T Consensus 195 giYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v~AY~f~g--------Yw~dVgTi~syy~aNmdLl~~~~~ 266 (393)
T COG0448 195 GIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKVYAYEFSG--------YWRDVGTIDSYYEANMDLLSPQPE 266 (393)
T ss_pred eeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCEEEEeccc--------hhhhcccHHHHHHhhHHhcCCCCc
Confidence 999999999999999775 369999999986 3344466 66854 77999888999998 566777
Q ss_pred cccc------------cCCcccccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCc
Q 001402 366 FSYC------------AYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS 433 (1084)
Q Consensus 366 ~~l~------------~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s 433 (1084)
|+++ .||++|.+- +.+.+|.+..| ||++| .|.||||+.+|+|+++|
T Consensus 267 ~~lyd~~w~IyT~~~~~pPak~~~~--------------------s~v~nSLv~~G-ciI~G-~V~nSVL~~~v~I~~gs 324 (393)
T COG0448 267 LNLYDRNWPIYTKNKNLPPAKFVND--------------------SEVSNSLVAGG-CIISG-TVENSVLFRGVRIGKGS 324 (393)
T ss_pred ccccCCCCceeecCCCCCCceEecC--------------------ceEeeeeeeCC-eEEEe-EEEeeEEecCeEECCCC
Confidence 7664 567777752 12556666667 78888 99999999999999999
Q ss_pred EEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEeeee
Q 001402 434 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV 482 (1084)
Q Consensus 434 ~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~~v 482 (1084)
+|++|+|+++|.||+||.|++||||++ +.||+|+.|+..
T Consensus 325 ~i~~svim~~~~IG~~~~l~~aIIDk~----------v~I~~g~~i~~~ 363 (393)
T COG0448 325 VIENSVIMPDVEIGEGAVLRRAIIDKN----------VVIGEGVVIGGD 363 (393)
T ss_pred EEEeeEEeCCcEECCCCEEEEEEeCCC----------cEeCCCcEEcCC
Confidence 999999999999999999999999994 999999998777
No 6
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.8e-43 Score=387.69 Aligned_cols=318 Identities=20% Similarity=0.226 Sum_probs=248.9
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc-e-eeecCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-L-HIEDLTPIATPFD 816 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~-~-~~~~l~~l~~p~~ 816 (1084)
...++||||+||+||||||+ ||.|+++||+..++ +.++++++..+++.+.++.. . ..+...++. +.+
T Consensus 23 ~~~~~aPGRvNLIGEHtDYn------~G~VlP~Ain~~t~----v~v~~r~d~~v~l~s~n~~~~~~~~~~~~d~~-~~~ 91 (390)
T COG0153 23 TVTAFAPGRVNLIGEHTDYN------GGFVLPCAINYGTY----VAVAKRDDGKVRLYSANFGNAGDIFFLLLDIA-KEK 91 (390)
T ss_pred ceEecCCceEEeeccceecc------CceEEEEEeecceE----EEEEEccCceEEEEeCCCccccceeecchhhc-ccc
Confidence 47889999999999999997 99999999999986 77888888889888866542 2 223333443 234
Q ss_pred CCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-h
Q 001402 817 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L 895 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~ 895 (1084)
.++|.+|+|+++..+. +.+....|+++++.||||.|+|||||||+.||++.++.+++++++++.+|++++.++|+ +
T Consensus 92 ~~~W~nYvkgvi~~l~---~~g~~~~G~~i~i~gnIP~GaGLSSSAAleva~~~al~~l~~~~~~k~~la~i~q~AEn~f 168 (390)
T COG0153 92 IDDWANYVKGVIKALQ---KRGYAFTGLDIVISGNIPIGAGLSSSAALEVAVALALQRLFNLPLDKAELAKIAQVAENQF 168 (390)
T ss_pred cchhhhhHHHHHHHHH---hcCCCcCCeeEEEecCCCCCCCcCchHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999887764 23455579999999999999999999999999999999999999999999999999996 7
Q ss_pred cCCCCcccchhhhcccc---eEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH---------------
Q 001402 896 MGTGGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------------- 957 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG---~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~--------------- 957 (1084)
+|++||+|||+++++|. ..++++.+ ++++++++|.. +..+||++|+.+|.+.
T Consensus 169 vGvn~G~mDQ~~s~~G~~~~al~ld~~~-----l~~~~~~~p~~-----~~~ivI~ns~vkr~la~seYn~Rr~ece~A~ 238 (390)
T COG0153 169 VGVNCGIMDQLASAFGKKDHALLLDCRT-----LEYEPVPFPVG-----GVSIVIVNSNVKRELADSEYNERRAECEEAA 238 (390)
T ss_pred cCCcCchHHHHHHHhCCCCcEEEEEccc-----CceEEeccCcc-----ceEEEEecCCCccccchhHHHHHHHHHHHHH
Confidence 89999999999999995 45555542 35677776652 4799999999977422
Q ss_pred HHHHH-------HHHHHhhc-C------h-HHHHHHHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCc
Q 001402 958 QVLQK-------VVTRYLQR-D------N-LLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN 1020 (1084)
Q Consensus 958 ~iL~~-------v~~~~~~~-~------~-~~~~~l~~l~~--~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~ 1020 (1084)
+.|+. +....+.. . + ...+..+...+ .+.++.+||+++|+..||++|+++|.++++.++ +++
T Consensus 239 ~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a~~Al~~~dl~~fG~Lm~~SH~slrddye-vt~ 317 (390)
T COG0153 239 EFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEAAKALRSGDLTEFGELMNESHESLRDDYE-VTC 317 (390)
T ss_pred HHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-ccc
Confidence 22222 11111100 0 1 11222222222 367888999999999999999999999999995 999
Q ss_pred HHHHHHHHHHcC--CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHH----hcCCCCcEEEEeecCC
Q 001402 1021 EFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLE----KDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1021 p~ld~li~~a~~--ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~----~~~~f~v~v~~~~i~~ 1082 (1084)
|++|.|++++.. |++|+||||||||||+++|+++ +.++.+++++. +..+++..+|.+.+..
T Consensus 318 pElD~lve~a~~~~G~~GaRmTGaGfGGc~IaLv~~-~~v~~~~e~v~~~y~~~~g~k~~~yv~~~~~ 384 (390)
T COG0153 318 PELDTLVEIALAAGGAYGARMTGAGFGGCVIALVPN-DDVEAVAEAVAEEYEKVTGLKAAFYVVEASQ 384 (390)
T ss_pred hhHHHHHHHHHHcCCcccceecCCCCCceEEEEech-hhHHHHHHHHHHhHHhhcCccccEEEEeccC
Confidence 999999999974 7799999999999999999987 66777766665 3467888899888754
No 7
>PRK05101 galactokinase; Provisional
Probab=100.00 E-value=9.7e-39 Score=370.46 Aligned_cols=317 Identities=17% Similarity=0.184 Sum_probs=240.7
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN 818 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~-~~~~~l~~l~~p~~~~ 818 (1084)
++++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....+++....+....
T Consensus 21 ~~~~APgRvnL~GeH~Dy~------gg~vL~~AId~~~~----v~i~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~ 90 (382)
T PRK05101 21 HTIQAPGRVNLIGEHTDYN------DGFVLPCAIDYQTV----ISCAKRDDRIVRVIAADYDNQQDEFSLDAPIVPHPEQ 90 (382)
T ss_pred eEEECCceEEEeccceeec------CCEEEEEEecccEE----EEEEECCCCEEEEEECCCCCCceEEecCcccccCCCC
Confidence 7889999999999999984 99999999999986 77888888888887654421 1223333311122335
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hcC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMG 897 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~~g 897 (1084)
+|.+|+++++..+.. .+....|+++++.|+||.|+|||||||+++|++.|++++++.++++++|++++..+|+ +.|
T Consensus 91 ~w~~yv~~~~~~l~~---~~~~~~g~~i~i~~~iP~gaGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~~G 167 (382)
T PRK05101 91 QWANYVRGVVKHLQE---RNPDFGGADLVISGNVPQGAGLSSSASLEVAVGQTFQQLYHLPLSGAEIALNGQEAENQFVG 167 (382)
T ss_pred chHHHHHHHHHHHHH---hCCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcC
Confidence 799999999987642 2333469999999999999999999999999999999999999999999999999998 579
Q ss_pred CCCcccchhhhcccce---EEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcc-------hHHHH--------
Q 001402 898 TGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR-------LAHQV-------- 959 (1084)
Q Consensus 898 t~~G~~Dq~a~~~GG~---~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr-------~T~~i-------- 959 (1084)
++||.|||+++++||. .++++.+ . .+.++++++ +..++|++|+.++ +++..
T Consensus 168 ~~~G~~Dq~~s~~G~~~~~~~~d~~~---~--~~~~~~~~~------~~~~vv~~sg~~~~l~~~~y~~r~~e~~~A~~~ 236 (382)
T PRK05101 168 CNCGIMDQLISALGKKDHALLIDCRS---L--ETKAVPMPE------GVAVVIINSNVKRGLVDSEYNTRRQQCETAARF 236 (382)
T ss_pred CCCccHHHHHHHcCCCCeEEEEEcCC---C--ceEEeeCCC------CcEEEEEeCCCCccccccchhHHHHHHHHHHHH
Confidence 9999999999999984 4444332 2 345555553 4689999999888 45531
Q ss_pred H-----HHHHHHHhh------cChHHHHHHHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHH
Q 001402 960 L-----QKVVTRYLQ------RDNLLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRL 1026 (1084)
Q Consensus 960 L-----~~v~~~~~~------~~~~~~~~l~~l~~--~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~l 1026 (1084)
+ .++...+.. .+....+..+.+.+ .+.++++||+++|++.||++|+++|.++++.+ ++++|++|.|
T Consensus 237 l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~h~i~E~~rv~~a~~al~~~d~~~lG~Lm~~sh~~lr~~~-~vS~~eld~l 315 (382)
T PRK05101 237 FGVKALRDVTLEQFNAVAAELDPVVAKRARHVITENARTLEAASALAAGDLKRMGELMAESHASMRDDF-EITVPQIDTL 315 (382)
T ss_pred hChHhhhcCCHHHHHHHHhhCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCHHHHHHHHHHHhHHHHhhc-CCCCHhHHHH
Confidence 1 110000000 01111234444543 57889999999999999999999999998655 5999999999
Q ss_pred HHHHcC--CC-CeEEEcCCCccceeEEEEcChhhHHHHHHHHH----hcCCCCcEEEEeecCC
Q 001402 1027 FAFADP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRMLE----KDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1027 i~~a~~--ga-~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~----~~~~f~v~v~~~~i~~ 1082 (1084)
++.+++ |+ +|+||||||+|||+++|++. +.++++.+.+. +.++..+.+|.+.+..
T Consensus 316 v~~a~~~~Ga~gGakltGaG~GG~~ial~~~-~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 377 (382)
T PRK05101 316 VEIVKAVIGDQGGVRMTGGGFGGCIVALVPE-ELVEAVRQAVAEQYEAKTGLKETFYVCKASQ 377 (382)
T ss_pred HHHHHhccCCcceEEeccCCCccEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCeEEEEecCC
Confidence 999986 76 58899999999999999996 66766666664 3455677888887653
No 8
>PRK00555 galactokinase; Provisional
Probab=100.00 E-value=2.7e-38 Score=364.13 Aligned_cols=318 Identities=19% Similarity=0.157 Sum_probs=238.9
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
++++|||||+|+|||+||. ||.|+++||+++++ +.++++++..+++.+.........++.. .+.....
T Consensus 3 ~~~~APGRv~LiGEH~dy~------~g~vl~~Ai~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~--~~~~~~~ 70 (363)
T PRK00555 3 VRYAAPGRINLIGEHTDYN------LGFALPIALPQRTV----VTFTPEHTDAITASSDRADGSARIPLDT--TPGQVTG 70 (363)
T ss_pred EEEEcCceEEeecccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecCC--CCCCCcc
Confidence 5678999999999999996 99999999999976 7788988888888876543222222221 1222356
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hcCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMGT 898 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~~gt 898 (1084)
|.+|+++++..+.. .+....|+++.|.|+||.|+|||||||+++|++.|++++++.++++++++++|+.+|+ +.|+
T Consensus 71 w~~y~~gv~~~l~~---~g~~~~g~~i~i~s~iP~g~GLgSSAA~~va~~~al~~~~~~~~~~~~la~~a~~aE~~~~G~ 147 (363)
T PRK00555 71 WAAYAAGVIWALRG---AGHPVPGGAMSITSDVEIGSGLSSSAALECAVLGAVGAATGTRIDRLEQARLAQRAENEYVGA 147 (363)
T ss_pred hHHHHHHHHHHHHH---cCCCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCC
Confidence 99999998776532 2334469999999999999999999999999999999999999999999999999998 5899
Q ss_pred CCcccchhhhcccce---EEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH--------HHHHHHHHHH
Q 001402 899 GGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------QVLQKVVTRY 967 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~---~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~--------~iL~~v~~~~ 967 (1084)
+||.|||+++++||. .++++.+ . .+.+++++++. ....|++++|+.++.+. .....+.+.+
T Consensus 148 ~~G~~Dq~as~~G~~~~~~~~d~~~---~--~~~~v~~~~~~---~~~~lvv~~s~~~~~~~~~~y~~rr~~~~~~~~~~ 219 (363)
T PRK00555 148 PTGLLDQLAALFGAPKTALLIDFRD---L--TVRPVAFDPDA---AGVVLLLMDSRARHRHAGGEYAARRASCERAAADL 219 (363)
T ss_pred CCChhHHHHHHhCCCCeEEEEEcCC---C--cEEEeccCCCc---CceEEEEEcCCCcccccchhhHHHHHHHHHHHHHh
Confidence 999999999999986 5566543 2 34566554321 23579999998877532 1111111111
Q ss_pred h-----hc------------C-hHHHHHHHHHH--HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHH
Q 001402 968 L-----QR------------D-NLLISSIKRLT--ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLF 1027 (1084)
Q Consensus 968 ~-----~~------------~-~~~~~~l~~l~--~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li 1027 (1084)
. .. + ....+..+.+. ..+.++..||.+||++.||++|+++|+.++..+ ++++|+++.|+
T Consensus 220 ~~~~lr~~~~~~~~~~~~~~~~~~~~r~~h~~~e~~~v~~~~~al~~gd~~~lg~lm~~~h~~lr~~~-~vS~~~ld~l~ 298 (363)
T PRK00555 220 GVSSLRAVQDRGLAALGAIADPIDARRARHVLTENQRVLDFAAALADSDFTAAGQLLTASHASMRDDF-EITTERIDLIA 298 (363)
T ss_pred CccchhcCCHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhHHHHhhc-CCCChhHHHHH
Confidence 0 00 0 11112222222 357788999999999999999999999887444 49999999999
Q ss_pred HHHcC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHH----hcCCCCcEEEEeecCC
Q 001402 1028 AFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLE----KDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1028 ~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~----~~~~f~v~v~~~~i~~ 1082 (1084)
+.+++ |++|+|+||||+|||+++|++. +.++++.+.++ +.++..+++|.+++..
T Consensus 299 ~~a~~~Ga~GaklsGaG~Gg~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 357 (363)
T PRK00555 299 DSAVRAGALGARMTGGGFGGCVIALVPA-DRAEDVADTVRRAAVTAGYPEPAVSRTYAAP 357 (363)
T ss_pred HHHHhcCCeEEEECCCCccCeEEEEEch-hHHHHHHHHHHHHHHHccCCCCcEEEEecCC
Confidence 99987 9999999999999999999986 45555555554 4456688999988653
No 9
>PRK05322 galactokinase; Provisional
Probab=100.00 E-value=3.9e-38 Score=365.74 Aligned_cols=317 Identities=18% Similarity=0.183 Sum_probs=237.8
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc--eeeecCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ--LHIEDLTPIATPFDH 817 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~--~~~~~l~~l~~p~~~ 817 (1084)
.+++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....++.++.. ...
T Consensus 20 ~~~~APgRv~L~GEH~d~~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~-~~~ 88 (387)
T PRK05322 20 DVFFSPGRINLIGEHTDYN------GGHVFPAAITLGTY----GAARKRDDKKVRLYSANFEDLGIIEFDLDDLSF-DKE 88 (387)
T ss_pred eEEEcCceeEecccceeec------CceeeeeeccceEE----EEEEECCCCEEEEEECCCCCCceEEEeccccCC-CCc
Confidence 6779999999999999995 99999999999976 77888888888888755431 12223333322 233
Q ss_pred CChHHHHHHHHHHhhhhhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-h
Q 001402 818 NDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L 895 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~ 895 (1084)
.+|.+|+++++..+.. ... ...||+++|.|+||.|+|||||||++||++.|++++++.++++++|+++|..+|+ +
T Consensus 89 ~~w~~y~~gvi~~l~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~va~~~al~~~~~~~l~~~~la~~a~~~E~~~ 165 (387)
T PRK05322 89 DDWANYPKGVLKFLQE---AGYKIDHGFDILIYGNIPNGAGLSSSASIELLTGVILKDLFNLDLDRLELVKLGQKTENEF 165 (387)
T ss_pred cchHHHHHHHHHHHHH---cCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcc
Confidence 4699999999887642 222 2379999999999999999999999999999999999999999999999999998 5
Q ss_pred cCCCCcccchhhhcccce---EEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH------------HHH
Q 001402 896 MGTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH------------QVL 960 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG~---~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~------------~iL 960 (1084)
.|++||+|||+++++||. .++++. +++++..|+++. ...|+|++|+.++.+. +++
T Consensus 166 ~G~~sG~mDq~as~~G~~~~~~~~d~~---~~~~~~~~~~~~-------~~~lvv~dsg~~~~~~~~~yn~r~~e~~~a~ 235 (387)
T PRK05322 166 IGVNSGIMDQFAIGMGKKDHAILLDCN---TLEYEYVPLDLG-------DYVIVIMNTNKRRELADSKYNERRAECEKAL 235 (387)
T ss_pred CCCCcchHHHHHHHhccCCeEEEEecC---CCceEEeccCCC-------CeEEEEEECCCccccCcchhhHHHHHHHHHH
Confidence 799999999999999984 444432 233333444321 3579999999988643 333
Q ss_pred HHHHHHH-----hhcChHH--------------HHHHHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCC
Q 001402 961 QKVVTRY-----LQRDNLL--------------ISSIKRL--TELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS 1019 (1084)
Q Consensus 961 ~~v~~~~-----~~~~~~~--------------~~~l~~l--~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs 1019 (1084)
+.+...+ ...+++. .+..+.+ ...+..+..||+++|++.||++|+++|..+++.+ .++
T Consensus 236 ~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~r~~~~~~al~~~d~~~lg~lm~~sh~~L~~~y-~~s 314 (387)
T PRK05322 236 EELQKKLDIKSLGELTEEEFDEYSYLIKDETLLKRARHAVTENQRTLKAVKALKAGDLEKFGRLMNASHVSLRDDY-EVT 314 (387)
T ss_pred HHHhhhcCccchhcCCHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhHHHHhhh-cCC
Confidence 3322111 0000100 1111111 1346788999999999999999999999877655 388
Q ss_pred cHHHHHHHHHHc-C-CCCeEEEcCCCccceeEEEEcChhhHHHHHHH----HHhcCCCCcEEEEeecCC
Q 001402 1020 NEFVDRLFAFAD-P-YCCGYKLVGAGGGGFALLLAKDAESATELRRM----LEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1020 ~p~ld~li~~a~-~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~----L~~~~~f~v~v~~~~i~~ 1082 (1084)
+|+++.|++.++ . |++|+||||||+|||+++|++. +..+++.+. +.+.++..+.+|.++++.
T Consensus 315 ~~eld~lv~~a~~~~Ga~garlsGaG~GG~vial~~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~ 382 (387)
T PRK05322 315 GLELDTLVEAAWKQEGVLGARMTGAGFGGCAIAIVKK-DKVEAFKENVGKAYEEKIGYAASFYVAEIGD 382 (387)
T ss_pred CHhHHHHHHHHHhcCCccEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhcCCCCcEEEEecCC
Confidence 899999999995 4 9999999999999999999986 445555444 444567788999988754
No 10
>PLN02865 galactokinase
Probab=100.00 E-value=5.3e-38 Score=363.83 Aligned_cols=324 Identities=18% Similarity=0.128 Sum_probs=241.4
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCC------
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT------ 813 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~------ 813 (1084)
++++|||||||+|||+||+ ||.||++||+++++ +.++++++..+++.+........+++++...
T Consensus 31 ~~~~APGRVnlIGEHtDYn------gG~VLp~AI~~~~~----va~~~~~~~~i~v~s~~~~~~~~~~~~~~~~~~~~~~ 100 (423)
T PLN02865 31 RVVVSPYRICPLGAHIDHQ------GGTVSAMTINKGIL----LGFVPSGDPEVLLRSAQFEGEVRFRVDEIQHPIANVS 100 (423)
T ss_pred eEEEcCcceecccccccCC------CCeEEeEEeeccEE----EEEEECCCCEEEEEECCCCCceEEecccccccccccc
Confidence 5789999999999999997 99999999999976 7788888888888776543222233332211
Q ss_pred --CCCCCChHHHHHHHHHHhhhhhhhcccc-cCEEEEEEecC-CCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 001402 814 --PFDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANV-PRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLV 889 (1084)
Q Consensus 814 --p~~~~~~~~lvkaal~~~g~~~~~~~~~-~G~~I~i~S~I-P~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la 889 (1084)
+....+|.+|+++++..+. +.+... .||++.|.++| |.|+|||||||+.+|++.|++.++++.++++++++++
T Consensus 101 ~~~~~~~~W~~Yv~gv~~~l~---~~g~~~~~G~~~~v~g~vpP~gsGLsSSAAl~va~~~al~~~~~~~~~~~~la~~a 177 (423)
T PLN02865 101 SDSKEESNWGDYARGAVYALQ---SRGHALSQGITGYISGSEGLDSSGLSSSAAVGVAYLLALENANNLTVSPEDNIELD 177 (423)
T ss_pred ccCCCCCCHHHHHHHHHHHHH---HcCCCCCCceEEEEECCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 1233579999999998763 223323 69999999999 6899999999999999999999999999999999999
Q ss_pred HHHHH-hcCCCCcccchhhhccc---ceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH--------
Q 001402 890 LLLEQ-LMGTGGGWQDQIGGLYP---GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH-------- 957 (1084)
Q Consensus 890 ~~~E~-~~gt~~G~~Dq~a~~~G---G~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~-------- 957 (1084)
..+|+ +.|++||+|||+++++| ++.++++.+. .++..|+++++... ...+.+++++|+.+|...
T Consensus 178 ~~~E~~~~G~~~G~mDQ~as~~~~~g~~~~iDf~~l---~~~~vpl~~~~~~~-~~~~~ivv~~s~~~h~l~~~~~Yn~R 253 (423)
T PLN02865 178 RLIENEYLGLRNGILDQSAILLSRYGCLTFMDCKTL---DHKLVSLQFQQPGG-EKPFKILLAFSGLRHALTNKPGYNLR 253 (423)
T ss_pred HHHHHHhcCCCCccccHHHHHhcccCceEEEEccCC---CcceeecCcccccC-CCCeEEEEEeCCCchhhcccchhhHH
Confidence 99997 68999999999996655 7888887653 33445555332100 025678999998877421
Q ss_pred --------HHHHHH------HHHHhh-------------cChHHHHHHHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHH
Q 001402 958 --------QVLQKV------VTRYLQ-------------RDNLLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAW 1008 (1084)
Q Consensus 958 --------~iL~~v------~~~~~~-------------~~~~~~~~l~~l~~--~a~~~~~AL~~gD~~~lg~lm~~s~ 1008 (1084)
.+|.+. ...+.. .+....+..+.+.+ .+.++.+||+++|++.||++|+++|
T Consensus 254 r~Ec~~aa~~l~~~~~~~~~~~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh 333 (423)
T PLN02865 254 VSECQEAARFLLEASGNDELEPLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASG 333 (423)
T ss_pred HHHHHHHHHHHHHhcCCccchhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhh
Confidence 122110 000000 00111233444433 3678889999999999999999999
Q ss_pred HHHhhcCCCCCcHHHHHHHHHHcC--CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc-----------CCCCcEE
Q 001402 1009 RLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD-----------SNFNSEV 1075 (1084)
Q Consensus 1009 ~~~~~l~~~vs~p~ld~li~~a~~--ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~-----------~~f~v~v 1075 (1084)
.+++++++ +++|++|.|++.+++ |++|+||+|+|+|||+++|+++ +.++++.+.+.+. ++....+
T Consensus 334 ~Slrd~ye-vS~~eld~lv~~a~~~~Ga~GaR~tGgGfGGc~vaLv~~-~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~ 411 (423)
T PLN02865 334 LSSIENYE-CGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDA-EMAEEAASFVRDEYEKAQPELASNINGDKPV 411 (423)
T ss_pred hhHHhhcc-CCcHHHHHHHHHHHhcCCCeEEEEeccCCccEEEEEEch-hHHHHHHHHHHHHHHhhccccccccCCCCcE
Confidence 99999885 999999999999875 8999999999999999999996 6666666665432 2346678
Q ss_pred EEeecCC
Q 001402 1076 YNWNIYL 1082 (1084)
Q Consensus 1076 ~~~~i~~ 1082 (1084)
|.+.+..
T Consensus 412 ~~~~p~~ 418 (423)
T PLN02865 412 LICEAGD 418 (423)
T ss_pred EEEecCC
Confidence 8877653
No 11
>PTZ00290 galactokinase; Provisional
Probab=100.00 E-value=2e-37 Score=362.17 Aligned_cols=321 Identities=14% Similarity=0.123 Sum_probs=224.4
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEc---CCCcEEEEeCCCCceeeecCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT---KMSGVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~---~~~~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
++++|||||||+||||||+ ||.|+++||+++++ +.+.++ ++..+++.+.... .+++++...+..
T Consensus 38 ~~~~APGRVnLIGEHtDYn------gG~VLp~AId~~~~----va~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~ 104 (468)
T PTZ00290 38 LFTFAPGRVNFIGEHVDYM------GGYVCPAAVLEGCH----ILVGRVKHFCDHKLRFATETDE---HFVLDHLGGAKH 104 (468)
T ss_pred EEEeccceeeecccccccC------CCeeeeccccCcEE----EEEeecCCCCCCeEEEEECCCc---eeecCcccccCC
Confidence 8899999999999999996 99999999999986 555443 4566777554322 122222221223
Q ss_pred CCChHHHHHHHHHH-hhhhhhhcc-----cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCC------------
Q 001402 817 HNDPFRLVKSALLV-TGVIHEKLI-----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDG------------ 878 (1084)
Q Consensus 817 ~~~~~~lvkaal~~-~g~~~~~~~-----~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~------------ 878 (1084)
..+|.+|+++++.. +. +.+. ...||++.|.++||.|+|||||||+.+|++.|++.+++.
T Consensus 105 ~~~W~nYv~gv~~~~l~---~~g~~~~~~~~~G~d~~i~gdVP~GaGLSSSAAleva~~~al~~~~~~~~~~~~~~~~~~ 181 (468)
T PTZ00290 105 NKAWTTFVRGAATLRLN---RLGVAIDAPSLQGVCMVVHGTLPMGAGMSASASFGVALLNAINTVVTRRYKGCPTSPGRR 181 (468)
T ss_pred cccHHHHHHHHHHHHHH---HhCCCcccCCCCCeEEEEeCCCCCCCCcchHHHHHHHHHHHHHHHhhhhccccccccccc
Confidence 35799999999854 22 1222 236999999999999999999999999999999998732
Q ss_pred --------CCCHHHHHHHHHHHHH-hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEE
Q 001402 879 --------DQSNENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVF 949 (1084)
Q Consensus 879 --------~ls~~eLa~la~~~E~-~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~ 949 (1084)
+.+..+|+.+|.++|+ ++|.+||+|||+++++|+.....+.+..++ +++++++++- ...++.|+|++
T Consensus 182 ~~~~~~~~~~~~~~lA~~aqraEn~~vGv~cGiMDQ~asa~g~~~~al~iD~~~l--~~~~v~l~~~--~~~~~~~vV~n 257 (468)
T PTZ00290 182 YSILPPMSKEELIELAKQARRIETEFCGVNVGIMDQFISAFAEEDKFMFLDCKSL--TFESHDMTPL--LGDGACFLLID 257 (468)
T ss_pred cccccccCcccHHHHHHHHHHHHHhhcCCCcchhhHHHHHhCCCCcEEEEecCCC--eEEEeccCCC--CCCCcEEEEEe
Confidence 1234788999999998 689999999999999985443332233223 4556554320 01257899999
Q ss_pred cCCcchHH------------------HHHHH-----HH---H----------------HHh-h---c-C-hHHHHHHHHH
Q 001402 950 TGQVRLAH------------------QVLQK-----VV---T----------------RYL-Q---R-D-NLLISSIKRL 981 (1084)
Q Consensus 950 tg~tr~T~------------------~iL~~-----v~---~----------------~~~-~---~-~-~~~~~~l~~l 981 (1084)
|+.+|+-. +.|.. +. + .+. . . + ....+..+.+
T Consensus 258 S~v~h~l~~s~~~~Yn~Rr~ece~a~~~L~~~~l~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Ra~HVi 337 (468)
T PTZ00290 258 SMIKHDLLGGTAGMYNTVRSDQEGAQKKIGKHRYRGKPFTFSDLVRNPKKYTFDGDVVAFMESCKPLMTPGEFERGTYNI 337 (468)
T ss_pred CCCcchhccccchhhHHHHHHHHHHHHHhccccccchhhhHHHhhhccccccccccHHHHHHHhhhcCCHHHHHHHHHHh
Confidence 99887521 11110 00 0 000 0 0 0 1111333333
Q ss_pred HH--HHHHHHHHHh-------hcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHH-cC-CCCeEEEcCCCccceeEE
Q 001402 982 TE--LAKNGRDALM-------NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 982 ~~--~a~~~~~AL~-------~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a-~~-ga~GaklSGAGgGG~via 1050 (1084)
.+ .+.+++.+|+ .+|++.||++|+++|.++++.+ ++++|++|.|++++ .. |++|+||||||+|||+++
T Consensus 338 tEn~RV~~a~~al~~~~~l~~~~~~~~lG~lm~~sh~sL~~~~-~vS~~elD~lv~~~~~~~G~~GaRlTGaG~GGc~i~ 416 (468)
T PTZ00290 338 MEQIRTLEFIKLNDPELPLSREERFRKAGEILNAGHQGMRDLM-KITTPELDFIHELINEEKGVAGGRMMGGGFGGCIIL 416 (468)
T ss_pred hHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHhCCCcEEEEecCCCceEEEE
Confidence 33 2566667774 4569999999999999888877 49999999999976 44 899999999999999999
Q ss_pred EEcChhhHHHHHH----HHHhcCCCCcEEEEeecCC
Q 001402 1051 LAKDAESATELRR----MLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1051 L~~~~~~ae~i~~----~L~~~~~f~v~v~~~~i~~ 1082 (1084)
|+++ +..+++.+ .+.+.++...++|.+.+..
T Consensus 417 Lv~~-~~~~~~~~~v~~~y~~~~g~~~~~~~~~~~~ 451 (468)
T PTZ00290 417 LLKK-NAVDRVVAHVREKFKARFGVENDVYPVVAGD 451 (468)
T ss_pred Eech-hhHHHHHHHHHHHHHHhhCCCCcEEEEecCC
Confidence 9986 44454444 4444556678999987753
No 12
>TIGR00131 gal_kin galactokinase. The galactokinases found by this model are divided into two sets. Prokaryotic forms are generally shorter. The eukaryotic forms are longer because of additional central regions and in some cases are known to be bifunctional, with regulatory activities that are independent of galactokinase activity.
Probab=100.00 E-value=6.8e-37 Score=356.57 Aligned_cols=318 Identities=19% Similarity=0.213 Sum_probs=236.1
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc-eeeecCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHN 818 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~-~~~~~l~~l~~p~~~~ 818 (1084)
++++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+..... ....+++....+.+..
T Consensus 18 ~~~~APgrv~L~GeH~dy~------g~~vl~~AI~~~~~----v~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~ 87 (386)
T TIGR00131 18 FTARAPGRVNLIGEHTDYN------DGSVLPCAIDFGTL----CAVAVRDDKNVRIYLANADNKFAERSLDLPLDGSEVS 87 (386)
T ss_pred EEEECCcceEeeccceeeC------CceEEeeEeeccEE----EEEEECCCCeEEEEECCCCCcceEEECCCCCCCCCCC
Confidence 7889999999999999995 99999999999876 77888888888887654421 1112222111122225
Q ss_pred ChHHHHHHHHHHhhhhhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-c
Q 001402 819 DPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-M 896 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~ 896 (1084)
+|.+|+++++..+.. .+. ...||++.|.++||.|+|||||||+++|++.|++.+++.++++++|++++..+|+. .
T Consensus 88 ~w~~y~~~~~~~~~~---~~~~~~~g~~i~i~s~iP~gsGLgSSAA~~vA~~~al~~~~~~~~~~~~l~~~a~~~E~~~~ 164 (386)
T TIGR00131 88 DWANYFKGVLHVAQE---RFNSFPLGADIVCSGNVPTGSGLSSSAAFECAVGAVLQNMGHLPLDSKQILLRIQVAENHFV 164 (386)
T ss_pred CcHhHHHHHHHHHHH---hcCCCCCceEEEEECCCCCCCCcchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCcc
Confidence 688999999876531 222 24599999999999999999999999999999999999999999999999999984 7
Q ss_pred CCCCcccchhhhcccce---EEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHH-HH-------HHHH
Q 001402 897 GTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQV-LQ-------KVVT 965 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~---~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~i-L~-------~v~~ 965 (1084)
|+++|.|||+++++||. .++++.+ + .+.++++++ ++..|+|++|+.++.|.+. +. ...+
T Consensus 165 G~~~g~~Dq~~s~~G~~~~~l~~~~~~---~--~~~~~~~~~-----~~~~lvv~~s~~~~~t~~~~y~~r~~e~~~a~~ 234 (386)
T TIGR00131 165 GVNCGIMDQAASVLGKEDHALLVECRS---L--KATPFKFPQ-----LGIAFVIANTNVKRTLAPSNYNTRRQECTTAAN 234 (386)
T ss_pred CCCcchHHHHHHHhccCCcEEEEEcCC---C--ceeeecCCC-----CCeEEEEEeCCCccccccchhHHHHHHHHHHHH
Confidence 89999999999999994 4444332 2 345665553 2468999999998865411 00 0000
Q ss_pred --------HHhhcChHHH----HHHHHHH--------------HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCC
Q 001402 966 --------RYLQRDNLLI----SSIKRLT--------------ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS 1019 (1084)
Q Consensus 966 --------~~~~~~~~~~----~~l~~l~--------------~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs 1019 (1084)
......+... +.+..+. ..+.++.+||.++|++.||++|+++|.++++++ +++
T Consensus 235 ~l~~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~r~~h~v~e~~rv~~~~~al~~~d~~~lG~lm~~sh~~l~~~~-~vs 313 (386)
T TIGR00131 235 FLAATDKGALRDFMNEYFARYIARLTKMLPLVEERAKHVVSENLRVLKAVKAMKDNDFKQFGALMNESHASCDDDY-ECT 313 (386)
T ss_pred HhccccccchhhCCHHHHhhhHhhHhhcCHHHHhhHheeehHHHHHHHHHHHHHhCcHHHHHHHHHHhhHHHHHhc-CCC
Confidence 0000001100 1111111 124578999999999999999999999999876 699
Q ss_pred cHHHHHHHHHH-cC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc----CCCCcEEEEeecCC
Q 001402 1020 NEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1020 ~p~ld~li~~a-~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~----~~f~v~v~~~~i~~ 1082 (1084)
+|+++.+++.+ .. |++|+||||||+|||+++|+++ +.++++.+.+++. ++.+..+|.+.++.
T Consensus 314 ~peld~lv~~a~~~~GAlGakltGaG~GG~vial~~~-~~~~~v~~~~~~~y~~~~~~~~~~~~~~~~~ 381 (386)
T TIGR00131 314 CPEIDELVCSAALVNGSGGSRMTGAGFGGCTVHLVPN-ENVDKVRQAVADKYPKKTGLELTFYVIVSKP 381 (386)
T ss_pred CHHHHHHHHHHHhcCCCcEEEEecCCCceEEEEEEcH-HHHHHHHHHHHHHHHHhhCCCCcEEEEEECC
Confidence 99999999875 54 9999999999999999999996 5677787777543 45678888887653
No 13
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents the low GC Gram-positive organism forms of the ERG8 type of phosphomevalonate kinase.
Probab=100.00 E-value=1.8e-36 Score=348.64 Aligned_cols=313 Identities=20% Similarity=0.196 Sum_probs=245.0
Q ss_pred EEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc-eeeecCCC--C-CCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTP--I-ATPFD 816 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~-~~~~~l~~--l-~~p~~ 816 (1084)
.++|||||+|+|||+|+.| |-.+|.+||+.+.+ ++++++++..+++.+..... .....++. + .....
T Consensus 2 ~~~APGKl~L~GEhavv~~-----G~pAl~~aI~~~~~----v~i~~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~ 72 (358)
T TIGR01220 2 VVHAPGKLFVAGEYAVVEP-----GNPAILVAVDRFVT----VTVEDADGAADVIISSDLGPQPVGWRRHDGRLVVRDPD 72 (358)
T ss_pred eeecceeEEEeeeEEEecC-----CCeEEEEEEcCcEE----EEEEeCCCCceEEEecCCCCCceEEEecCCceeecccc
Confidence 5789999999999999941 34599999999865 78888877767776654321 11111111 1 01112
Q ss_pred CCChHHHHHHHHHHhh-hhhhhcccccCEEEEEEecCCCC----CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Q 001402 817 HNDPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRG----SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLL 891 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g-~~~~~~~~~~G~~I~i~S~IP~G----sGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~ 891 (1084)
..+|++|+++++..+. .........+|+++.|.|+||.+ +|||||||++||++.|++++++.++++++|+++|..
T Consensus 73 ~~~~~~~v~~~i~~~~~~~~~~~~~~~g~~~~i~s~ip~~~g~k~GLGSSAA~~Va~~~Al~~~~~~~l~~~~l~~lA~~ 152 (358)
T TIGR01220 73 ARSALAYVVSAIETVERYAGERNQKLPALHLSVSSRLDEADGRKYGLGSSGAVTVATVKALNAFYDLELSNDEIFKLAML 152 (358)
T ss_pred cccchHHHHHHHHHHHHHHHhcCCCCCceEEEEecCCCCcCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 3469999999887542 12122233468999999999984 699999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccchhhhcccceEEEecCCCcc------------------ceeEEEEccCChhhhhccCcEEEEEEcCCc
Q 001402 892 LEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIP------------------LRLQVIPLLASPQLILELQQRLLVVFTGQV 953 (1084)
Q Consensus 892 ~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~------------------~~~~v~pl~~~~~~~~~l~~~lvlv~tg~t 953 (1084)
+|...+.+++.+|++++++||++.++..+... ....++++++++ +.+++|++||.+
T Consensus 153 ~E~~~~g~~sg~D~~a~~~GG~i~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~l~~~~------~~~l~v~~tg~~ 226 (358)
T TIGR01220 153 ATAELQPKGSCGDIAASTYGGWIAYSTFDHDWVLQLARRVGVDRTLKAPWPGLSIRPLPAPK------GLTLLIGWTGSP 226 (358)
T ss_pred HHhhhCCCCCcchhhhhhhCCEEEEecCCHHHHhhhhhccchhhhhccCCCccceeECCCCC------CCEEEEEeCCCC
Confidence 99865543444699999999998775432110 012356666554 468999999999
Q ss_pred chHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCC----CCCcHHHHHHHHH
Q 001402 954 RLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDP----HCSNEFVDRLFAF 1029 (1084)
Q Consensus 954 r~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~----~vs~p~ld~li~~ 1029 (1084)
++|+++++++...+...++.....++++.+++.++.+||+.+|++.|+++|+++|..++.+.. ++++|++++|++.
T Consensus 227 ~~T~~~v~~V~~~~~~~~~~~~~~l~~~~~i~~~~~~al~~~d~~~lg~~~~~~~~lL~~l~~~~~~~vs~~~l~~li~~ 306 (358)
T TIGR01220 227 ASTASLVSDVHRRKWRGSASYQRFLETSTDCVESAITAFETGDITSLQKEIRRNRQELARLDDEVGVGIETEKLKALCDA 306 (358)
T ss_pred cCcHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHH
Confidence 999999998866554444444467888999999999999999999999999999999998854 6899999999999
Q ss_pred HcC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhcC
Q 001402 1030 ADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDS 1069 (1084)
Q Consensus 1030 a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~ 1069 (1084)
+++ |+ |+|+||||+|||+++|+++++.++++.++|++++
T Consensus 307 a~~~ga-~aKlsGAGgGg~~ial~~~~~~~~~~~~~~~~~G 346 (358)
T TIGR01220 307 AEAYGG-AAKPSGAGGGDCGIAILDAEADITHVRQRWETAG 346 (358)
T ss_pred HhhcCc-eecCCCCCCcCEEEEEeCCchhHHHHHHHHHHCC
Confidence 988 66 9999999999999999998888999999999874
No 14
>PLN02521 galactokinase
Probab=100.00 E-value=2.4e-35 Score=348.92 Aligned_cols=317 Identities=19% Similarity=0.216 Sum_probs=228.2
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCC-CcEEEEeCCCCc-eeeecCCCCC-CCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQ-LHIEDLTPIA-TPFD 816 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~-~~i~i~s~~~~~-~~~~~l~~l~-~p~~ 816 (1084)
.+++|||||+|+|||+||. ||.||++||+++++ +.++++++ ..+++.+.+... ....+++... .+..
T Consensus 49 ~~~~APGRVnLiGEHtDy~------gg~vLp~AI~~~~~----v~~~~~~~~~~i~i~s~~~~~~~~~~~~~~~~~~~~~ 118 (497)
T PLN02521 49 LFARSPGRVNLIGEHIDYE------GYSVLPMAIRQDTI----VAIRRAEGSKKLRIANVNDKYTTCTFPADPDQEVDLA 118 (497)
T ss_pred EEEECCceEEEeccceeec------CCeEEEEEEcCcEE----EEEEEcCCCCEEEEEECCCCCCceeeecCcccccccc
Confidence 6789999999999999996 99999999999976 77888765 677777644321 1122222211 1122
Q ss_pred CCChHHHH----HHHHHHhhhhhhhcc---cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 001402 817 HNDPFRLV----KSALLVTGVIHEKLI---ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLV 889 (1084)
Q Consensus 817 ~~~~~~lv----kaal~~~g~~~~~~~---~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la 889 (1084)
...|.+|+ ++++..+. +... ...|+++.|.|+||.|+|||||||+++|++.|++++++.++++++|+++|
T Consensus 119 ~~~W~nYv~~~~~gv~~~l~---~~~~~~~~~~g~~i~i~s~IP~gsGLgSSAA~~vA~~~al~~~~~~~l~~~~la~la 195 (497)
T PLN02521 119 NHKWGNYFICGYKGVFEFLK---SKGVDVGPPVGLDVVVDGTVPTGSGLSSSAALVCSAAIAIMAALGLNFTKKEVAQFT 195 (497)
T ss_pred cccHHHHHHHHHHHHHHHHH---HhccccCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 34699999 55555443 1222 23599999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCcccchhhhccc--ceE-EEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcch---H-------
Q 001402 890 LLLEQLMGTGGGWQDQIGGLYP--GIK-FTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRL---A------- 956 (1084)
Q Consensus 890 ~~~E~~~gt~~G~~Dq~a~~~G--G~~-~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~---T------- 956 (1084)
..+|++.|+++|.|||+++++| |.. ++++. ++ .++++++|+ +..|+|++|+.++. +
T Consensus 196 ~~~E~~~g~~~g~mDq~as~~g~~g~al~~d~~---~l--~~~~v~~p~------~~~~vv~~s~v~~~k~~~a~~~Yn~ 264 (497)
T PLN02521 196 CKCERHIGTQSGGMDQAISIMAQQGVAKLIDFN---PV--RATDVQLPA------GGTFVIANSLAESNKAVTAATNYNN 264 (497)
T ss_pred HHHhCccCCCCChHHHHHHHhcCCCcEEEEecC---CC--ceEEeecCC------CcEEEEEECCCcccccccccccccH
Confidence 9999999999999999999999 443 34433 33 345555553 46899999884332 1
Q ss_pred --------HHHHHH------------------HHHH------------------------------Hhh--c-C------
Q 001402 957 --------HQVLQK------------------VVTR------------------------------YLQ--R-D------ 971 (1084)
Q Consensus 957 --------~~iL~~------------------v~~~------------------------------~~~--~-~------ 971 (1084)
..+|.+ +... +.. . .
T Consensus 265 R~~ec~~Aa~~L~~~~~~~~~~~~~~~~~Lrd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~t~~~~~~~~~~~~~~~~~ 344 (497)
T PLN02521 265 RVVECRLAAIVLAVKLGMSAEEAISKVKTLSDVEGLCVSFAGSHGSSDPAVAVKELLHEGPYTAEEIEEILGESLTSIFK 344 (497)
T ss_pred HHHHHHHHHHHHHhhcCCcchhcccccCCHHHHHHHHhhhcccccchhhHHHhhhhhccccCCHHHHHHHhCCcHHHHhh
Confidence 122321 1000 000 0 0
Q ss_pred ---------------hHHHHHHHHHHH--HHHHHHHHHhhc-----CHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHH
Q 001402 972 ---------------NLLISSIKRLTE--LAKNGRDALMNC-----DVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAF 1029 (1084)
Q Consensus 972 ---------------~~~~~~l~~l~~--~a~~~~~AL~~g-----D~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~ 1029 (1084)
....+..|.+.+ .+.++.+||+++ ++..||++|+++|.++++++ ++++|++|.|+++
T Consensus 345 ~~~~~~~~~~~~~~~~l~~Ra~Hvv~E~~RV~~~~~al~~~~~~~~~~~~lg~lm~~sh~slr~~~-~vS~~elD~lv~~ 423 (497)
T PLN02521 345 NSPTSLAVLKAAKHFKLHQRAVHVYSEAKRVHAFRDTVSSSLSEEEKLKKLGDLMNESHYSCSVLY-ECSCPELEELVKV 423 (497)
T ss_pred ccccccccccccchhHHhhhhhheecHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHhhcc-CCCcHHHHHHHHH
Confidence 000111222222 256788888876 38999999999999999887 5999999999999
Q ss_pred HcC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc-------------CCCCcEEEEeecCC
Q 001402 1030 ADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD-------------SNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1030 a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~-------------~~f~v~v~~~~i~~ 1082 (1084)
+++ |++|+||||||+|||+++|++. +.++++.+.+.+. ++.+..+|.+.+..
T Consensus 424 a~~~Ga~GaRltGaG~GG~~i~lv~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~ 489 (497)
T PLN02521 424 CRDNGALGARLTGAGWGGCAVALVKE-AIVPQFILALKEKFYKSRIEKGVIKEEDLGLYVFASKPSS 489 (497)
T ss_pred HHhcCCcEEEECCCCCCeEEEEEECH-HHHHHHHHHHHHHHHhhccccccccccCCCCcEEEEecCC
Confidence 987 9999999999999999999996 5666677666542 13456788777653
No 15
>TIGR00549 mevalon_kin mevalonate kinase. Paracoccus exhibits two genes within the phosphomevalonate/mevalonate kinase family, one of which falls between trusted and noise cutoffs of this model. The degree of divergence is high, but if the trees created from this model are correct, the proper names of these genes have been swapped.
Probab=100.00 E-value=1e-35 Score=331.37 Aligned_cols=271 Identities=25% Similarity=0.329 Sum_probs=214.2
Q ss_pred eceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCChHHH
Q 001402 744 LPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRL 823 (1084)
Q Consensus 744 aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~~~~l 823 (1084)
||||++|+|||+|+. ||.||++||+++++ +.++++++. +.+.++.... +.... +...+.|.+|
T Consensus 1 aPgkv~L~GEH~v~~------g~~al~~aI~~~~~----~~~~~~~~~-~~i~~~~~~~----~~~~~--~~~~~~~~~~ 63 (273)
T TIGR00549 1 APGKIILFGEHAVVY------GEPAIAAPIPLRTT----VTVIESSDG-SFIESDLGRG----SLDDA--PQELDGLVSY 63 (273)
T ss_pred CCceEEEEecChhcc------CCCeeEEEecccEE----EEEEEcCCC-ceEeccccCC----cHhHh--hHHHHHHHHH
Confidence 699999999999995 99999999999976 666666554 4444432210 01111 1122458899
Q ss_pred HHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cCCCCcc
Q 001402 824 VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGTGGGW 902 (1084)
Q Consensus 824 vkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~gt~~G~ 902 (1084)
+++++..+.. ....+++|++.|+||.|+|||||||+++|++.|++++++.++++++|+++|..+|+. .|.++|.
T Consensus 64 v~~~l~~~~~-----~~~~~~~i~i~s~iP~g~GLGSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~G~~sG~ 138 (273)
T TIGR00549 64 IAEALSYFSE-----LNPPPLEIEIDSEIPPGRGLGSSAAVAVALIRALADYFGSELSKEELAKLANEAEKIAHGKPSGI 138 (273)
T ss_pred HHHHHHHhhc-----cCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCCchH
Confidence 9999876642 112359999999999999999999999999999999999999999999999999984 6888896
Q ss_pred cchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHH
Q 001402 903 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLT 982 (1084)
Q Consensus 903 ~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~ 982 (1084)
||+++++||+.+++...+. .++..+ ++..+++++|+.+++|+++++.+.......++.....++++.
T Consensus 139 -D~~~~~~Gg~~~~~~~~~~------~~~~~~------~~~~lvl~~tg~~~~T~~~~~~v~~~~~~~~~~~~~~~~~~~ 205 (273)
T TIGR00549 139 -DTATSTYGGPVYFEKGEGE------FTKLIS------LDGYFVIADTGVSGSTKEAVARVRQLLERFPELIDSIMDAIG 205 (273)
T ss_pred -hHHHHhcCCeEEEEcCCCc------eeeccC------CCeEEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 9999999999887644331 122222 246899999999999999988764333222223334566777
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEE
Q 001402 983 ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL 1051 (1084)
Q Consensus 983 ~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL 1051 (1084)
+++.++.+||.++|++.||++|+++|..++.+ ++++|++++|++.+++ |++|+||||||+|||+++|
T Consensus 206 ~~~~~~~~al~~~d~~~lg~l~~~~~~~l~~~--~vs~p~l~~l~~~~~~~Ga~gaklsGaG~GG~~i~l 273 (273)
T TIGR00549 206 ELTLEAKAALQDGDVESLGELMNINQGLLKAL--GVSHPKLDQLVETARKAGALGAKLTGAGGGGCMIAL 273 (273)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHCCCceeeeccCCCCceEEeC
Confidence 88899999999999999999999999988877 4899999999999987 8999999999999999985
No 16
>PLN02677 mevalonate kinase
Probab=100.00 E-value=3.2e-35 Score=337.99 Aligned_cols=315 Identities=19% Similarity=0.196 Sum_probs=235.0
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEc----CCCcEEEEeCCCCceeeecCCCCCCC-
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT----KMSGVLISDDAGNQLHIEDLTPIATP- 814 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~----~~~~i~i~s~~~~~~~~~~l~~l~~p- 814 (1084)
+.++|||||+|+|||+|+. |+.++++||+++++ +.++++ +...|.+...+.......+.+++...
T Consensus 3 i~v~apgk~~l~Geh~~~~------g~~a~~~ai~~~~~----~~~~~~~~~~~~~~i~~~~~di~~~~~~~~~~l~~~~ 72 (387)
T PLN02677 3 VKARAPGKIILAGEHAVVH------GSTAVAAAIDLYTY----VSLRFPPSAENDDTLKLQLKDLGLEFSWPLARIKEAL 72 (387)
T ss_pred eEEeCCccEEEeeeeeeec------CCeeeeeEeeceEE----EEEEecCCCCCCCeEEEEcCCCCceEEechHhhhhhh
Confidence 7889999999999999995 99999999999986 666653 23444433222111111111111000
Q ss_pred -----CCCCChHHHHHHHHHHhh-hhhhh----------------------cccccCEEEEEEecCCCCCCCChHHHHHH
Q 001402 815 -----FDHNDPFRLVKSALLVTG-VIHEK----------------------LIESMGLQIRTWANVPRGSGLGTSSILAA 866 (1084)
Q Consensus 815 -----~~~~~~~~lvkaal~~~g-~~~~~----------------------~~~~~G~~I~i~S~IP~GsGLGSSSAlav 866 (1084)
.....+..+...++..+. ++.+. .....+++++|.|+||.|+|||||||++|
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~flyl~~~~~~~~~~~i~I~S~lP~GaGLGSSAAv~V 152 (387)
T PLN02677 73 PDLGTPCPSTPTSCSEETLKSIAALVEEQNIPEAKIWLSSGVSAFLWLYTSILGFNPATVVVTSELPLGSGLGSSAAFCV 152 (387)
T ss_pred ccccccccccccccCHHHHHHHHHHHHhcCCcchhhhhhhHHHHHHHHHHHhccCCCeEEEEEccCCCCCCccHHHHHHH
Confidence 011122233333333221 11110 01135799999999999999999999999
Q ss_pred HHHHHHHHHhCC-CC-------------CHHHHHHHHHHHHHh-cCCCCcccchhhhcccceEEEecCCCccceeEEEEc
Q 001402 867 AVVKALLQITDG-DQ-------------SNENVARLVLLLEQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 931 (1084)
Q Consensus 867 A~l~Al~~l~g~-~l-------------s~~eLa~la~~~E~~-~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl 931 (1084)
|++.|++.+++. ++ +.++++++|..+|.. .|++||+ |++++.+||+..++..+ ++++
T Consensus 153 a~~~AL~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~A~~~E~~~hG~pSGi-D~a~s~~Gg~I~f~~~~-------~~~l 224 (387)
T PLN02677 153 ALSAALLAASDSISVSTGGNGWSSLDETDLELVNKWAFEGEKIIHGKPSGI-DNTVSTYGNMIKFKSGE-------LTRL 224 (387)
T ss_pred HHHHHHHHHhCCcccccccccccccChhHHHHHHHHHHHHHHHHhCCCCch-hHHHHhcCCeEEEcCCC-------ceec
Confidence 999999999983 22 235788999999995 5789998 99999999988776432 2455
Q ss_pred cCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhh---------cCHHHHHH
Q 001402 932 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMN---------CDVDELGK 1002 (1084)
Q Consensus 932 ~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~---------gD~~~lg~ 1002 (1084)
+.++ +..++|++|+.+++|++++..|.+.+..+++.+...++.+.+++.++.++|++ +|++.|++
T Consensus 225 ~~~~------~l~llv~dTgv~~sT~~lV~~V~~~~~~~p~~~~~il~~~~~i~~~a~~al~~~~~~~~~~~~~~~~Lg~ 298 (387)
T PLN02677 225 QSNM------PLKMLITNTRVGRNTKALVAGVSERALRHPDAMKSVFNAVDSISEELATIIQSPAEDELSITEKEEKLKE 298 (387)
T ss_pred CCCC------CceEEEEECCCCCcHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHH
Confidence 4332 46899999999999999999987766555555556788899999999999998 56999999
Q ss_pred HHHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcC---hhhHHHHHHHHHhcCCCCcEEEEee
Q 001402 1003 IMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKD---AESATELRRMLEKDSNFNSEVYNWN 1079 (1084)
Q Consensus 1003 lm~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~---~~~ae~i~~~L~~~~~f~v~v~~~~ 1079 (1084)
+|+.+|.+++.|. +++|.++.+++++++.++|+|+||||+|||+++|+++ .+.++++.++|++. ..++|.++
T Consensus 299 lm~~N~~LL~~LG--VS~~~le~iv~~a~~~~~~AKlTGAGgGGC~IaL~~~~~~~~~~~~l~~~l~~~---G~~~~~~~ 373 (387)
T PLN02677 299 LMEMNQGLLQCMG--VSHSSIETVLRTTLKYKLVSKLTGAGGGGCVLTLLPTLLSGTVVDKVIAELESS---GFQCFTAG 373 (387)
T ss_pred HHHHHHHHHHHcC--CCcHHHHHHHHHHHHcCCccccccCCCCCEEEEEcccccchhHHHHHHHHHHHC---CCeEEEEE
Confidence 9999999999995 9999999999999987789999999999999999984 45788899999986 44677777
Q ss_pred cCCC
Q 001402 1080 IYLE 1083 (1084)
Q Consensus 1080 i~~~ 1083 (1084)
++.+
T Consensus 374 ~g~~ 377 (387)
T PLN02677 374 IGGN 377 (387)
T ss_pred eCCC
Confidence 6643
No 17
>PRK03817 galactokinase; Provisional
Probab=100.00 E-value=1.2e-33 Score=325.60 Aligned_cols=313 Identities=23% Similarity=0.219 Sum_probs=226.8
Q ss_pred EEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP 820 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~~ 820 (1084)
.++|||||+|+|||+||. ||.|+++||+++++ +.+++. ..+.+.+..........++++. ...+|
T Consensus 2 ~~~APgrv~L~Geh~d~~------~g~~l~~aI~~~~~----v~~~~~--~~~~i~~~~~~~~~~~~~~~~~---~~~~~ 66 (351)
T PRK03817 2 KVKSPGRVNLIGEHTDYN------DGYVLPFAINLYTF----LEIEKS--EKFIFYSENFNEEKTFELDKLE---KLNSW 66 (351)
T ss_pred EEEeeeeEEEeccceeeC------CCeEEEEEecCcEE----EEEEeC--CeEEEEECCCCCcEEEeCCccC---CCCch
Confidence 578999999999999985 99999999999875 667664 3466665544322222333321 23468
Q ss_pred HHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cCCC
Q 001402 821 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGTG 899 (1084)
Q Consensus 821 ~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~gt~ 899 (1084)
.+|+++++..+. +......|+++++.|+||.|+|||||||+++|++.|++++++.++++++++++|..+|+. .|++
T Consensus 67 ~~~~~~~~~~~~---~~~~~~~~~~i~i~s~iP~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~~a~~~E~~~~g~~ 143 (351)
T PRK03817 67 ADYIKGVIWVLE---KRGYEVGGVKGKVSSNLPIGAGLSSSASLEVAVAYALNEAYNLNLSKLELALLAREAENEFVGVP 143 (351)
T ss_pred HHHHHHHHHHHH---HcCCCCCCeEEEEeCCCCCCCCcCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcccccCCC
Confidence 999999887653 223345799999999999999999999999999999999999999999999999999984 6889
Q ss_pred CcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHH--------HHHHHHHHHh---
Q 001402 900 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ--------VLQKVVTRYL--- 968 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~--------iL~~v~~~~~--- 968 (1084)
+|++||+++.+|+...+...+..+. .+.++++++ +.++++++|+.++.+.. ...++.+.+.
T Consensus 144 ~g~~D~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~------~~~~vv~~sg~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 215 (351)
T PRK03817 144 CGIMDQFAVAFGKKDHAIFLDTMTL--EYEYVPFPE------DYEILVFDTGVKRELASSEYNERRQECEEALKILGKKS 215 (351)
T ss_pred CcCchhhheeeccCCEEEEEecCCC--ceEEEecCC------CcEEEEEeCCCccccccchhHHHHHHHHHHHHHhCccc
Confidence 9999999999986332221222222 234444443 46899999997654321 1111111110
Q ss_pred ----------hcChHHHHHHHHHH---HHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CC
Q 001402 969 ----------QRDNLLISSIKRLT---ELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC 1034 (1084)
Q Consensus 969 ----------~~~~~~~~~l~~l~---~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga 1034 (1084)
.-++...+.+.++. +.+..+..||.++|++.||++|+++|..+++.+ .+++|+++.|++.+++ |+
T Consensus 216 ~~~~~~~~~~~l~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~l~~~s~~~l~~~~-~~s~p~ld~l~~~a~~~Ga 294 (351)
T PRK03817 216 SKEVTEEDLSKLPPLLRKRAGYVLRENERVLKVRDALKEGDIETLGELLTESHWDLADNY-EVSCEELDFFVEFALELGA 294 (351)
T ss_pred hhcCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHcCC
Confidence 00011111111111 125678899999999999999999998777644 3789999999999987 99
Q ss_pred CeEEEcCCCccceeEEEEcChhhHHHHHHHHHh----cCCCCcEEEEeecC
Q 001402 1035 CGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1035 ~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~----~~~f~v~v~~~~i~ 1081 (1084)
+|+|+||||+|||+++|+++ +.++++.+.+++ .+++.+++|.+.++
T Consensus 295 lGaklsGaG~Gg~vlal~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 344 (351)
T PRK03817 295 YGARLTGAGFGGSAIALVDK-GKFESIGEELLEEYKKRFGIDPKYFVVESS 344 (351)
T ss_pred CEEEEecCCCCeEEEEEEch-HHHHHHHHHHHHHHHHhcCCCCcEEEEecC
Confidence 99999999999999999986 566666666654 34578888887654
No 18
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism]
Probab=100.00 E-value=8.8e-34 Score=314.30 Aligned_cols=294 Identities=23% Similarity=0.275 Sum_probs=239.9
Q ss_pred EEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP 820 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~~ 820 (1084)
.+++||++.|+|||..+ +|..++.+||+++.+ ++++..++..+.+.+.+.... .+.. + ..
T Consensus 2 ~~~aPgKliL~GEHAVV------yG~pAI~~aI~~~~~----v~~~~s~~~~~~i~~~~~~~~------~~~~--~--~~ 61 (307)
T COG1577 2 SVSAPGKLILFGEHAVV------YGYPAIAAAIDLRVT----VTISESDSNKIVIESSDLKSS------TLER--D--ED 61 (307)
T ss_pred cccccccEEEEecceee------eCCchhheeeeeeEE----EEEEecCCCcEEEeccCCCCc------cccc--c--cc
Confidence 57899999999999877 488899999999976 777777766676665433211 1111 1 11
Q ss_pred HHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cCCC
Q 001402 821 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGTG 899 (1084)
Q Consensus 821 ~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~gt~ 899 (1084)
..|++.++..+.....+ ....||+++|.|+||.|+|||||||+++|++.|+++++|.+++++++++++..+|.. .|.+
T Consensus 62 ~~~~~~~v~~~~e~~~~-~~~~~~~l~I~S~iP~g~GLGSSAAVsva~i~al~~~~g~~ls~~~l~~la~~~e~~vqG~~ 140 (307)
T COG1577 62 EGYIQAAVRLASELLNQ-SSLKPFSLEIDSEIPIGAGLGSSAAVSVAVIKALSAYFGVELSPEELAKLANKVELIVQGKA 140 (307)
T ss_pred chHHHHHHHHHHHHhcc-cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCC
Confidence 25777777766422111 236799999999999999999999999999999999999999999999999999996 4667
Q ss_pred CcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHH
Q 001402 900 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 979 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~ 979 (1084)
+| .|.+.+.+||+.++.... .++++.++. ...|++.|||.+.+|+++++.+.......++.+...++
T Consensus 141 Sg-~D~a~~~~gg~v~~~~~~------~~~~l~~~~------~~~~~I~~tg~~~sT~e~V~~V~~l~~~~~~~~~~~~~ 207 (307)
T COG1577 141 SG-IDIATITYGGLVAFKKGF------DFEKLEIEL------LGTLVIGDTGVPGSTKELVAGVAKLLEEEPEVIDPILD 207 (307)
T ss_pred Cc-ccceEEEeCCEEEEecCC------Ccccccccc------CCeEEEEEcCCcCcHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 76 589899999999987531 234454432 22799999999999999999887665455566677889
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhhH
Q 001402 980 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESA 1058 (1084)
Q Consensus 980 ~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~a 1058 (1084)
++.+++.++..+|+++|.+.||++|+.+|.+++.+. +++|++++|++.+++ |+.|+|+||||+|||+++|+++.+.+
T Consensus 208 ~ig~~~~~a~~al~~~d~e~lgelm~~nq~LL~~Lg--Vs~~~L~~lv~~a~~~Ga~gaKlTGAGgGGc~IaL~~~~~~~ 285 (307)
T COG1577 208 AIGELVQEAEAALQTGDFEELGELMNINQGLLKALG--VSTPELDELVEAARSLGALGAKLTGAGGGGCIIALAKNEEIA 285 (307)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcC--cCcHHHHHHHHHHHhcCccccccccCCCCceEEEEeccchHH
Confidence 999999999999999999999999999999999995 999999999999998 99999999999999999999976668
Q ss_pred HHHHHHHHhcCC
Q 001402 1059 TELRRMLEKDSN 1070 (1084)
Q Consensus 1059 e~i~~~L~~~~~ 1070 (1084)
+.+.+++.+++.
T Consensus 286 ~~l~~~~~~~~i 297 (307)
T COG1577 286 ETLSNRLEKAGI 297 (307)
T ss_pred HHHHHHHHhcCc
Confidence 889999988743
No 19
>PRK03926 mevalonate kinase; Provisional
Probab=100.00 E-value=7.4e-33 Score=312.90 Aligned_cols=289 Identities=22% Similarity=0.256 Sum_probs=224.0
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
+.++|||||+|+|||+|+. ||.++++||+++.+ +++++.++. +.+..... +. ..
T Consensus 2 ~~~~aPgkv~L~Geh~~~~------g~~~l~~aI~~~~~----v~i~~~~~~-~~i~~~~~---------~~------~~ 55 (302)
T PRK03926 2 VLCSAPGKIYLFGEHAVVY------GKPAIACAIDLRTY----VRAEFNDDS-IYIESDYG---------KT------GE 55 (302)
T ss_pred eEEeeeeEEEEEecceeec------CCeEEEEEecceEE----EEEEECCCc-eEEecccc---------cc------cc
Confidence 5789999999999999994 99999999999976 667665432 33322110 00 12
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGT 898 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~gt 898 (1084)
|..+++.++..+.. . ....|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|.. .|.
T Consensus 56 ~~~~~~~~~~~~~~---~-~~~~g~~i~i~~~iP~~~GLGSSsA~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~G~ 131 (302)
T PRK03926 56 KHPYVSAAIEKMRE---E-ADKDGVTVSITSQIPVGSGLGSSAAVTVATIGALNRLLGLGLSLEEIAKLGHKVELLVQGA 131 (302)
T ss_pred hhHHHHHHHHHHHH---h-cCCCCeEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCC
Confidence 44577777765531 1 223599999999999999999999999999999999999999999999999999995 566
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHH-HH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI-SS 977 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~-~~ 977 (1084)
++| +|++++++||+.++.... +++. .++.++|++|+.+++|+++++.+.... ...++.. ..
T Consensus 132 ~sg-~D~~~~~~Gg~~~~~~~~---------~l~~-------~~~~~vl~~~~~~~sT~~~~~~~~~~~-~~~~~~~~~~ 193 (302)
T PRK03926 132 ASP-TDTYVSTMGGFVTIPDRK---------KLPF-------PECGIVVGYTGSSGSTKELVANVRKLK-EEYPELIEPI 193 (302)
T ss_pred Cch-HHHHHHhcCCeEEEcCCC---------cCCC-------CCceEEEEECCCCCcHHHHHHHHHHHH-HhCHHHHHHH
Confidence 666 699999999988765321 2222 145789999999999999877653322 2222222 34
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
++.+.+++..+..++.++|++.|+++|+++|..+..+ ++++|+++++++.+.+ |++|+||||||+|||+++|+++ +
T Consensus 194 ~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~l~~~~~~~ga~ga~lSGaG~Gg~v~~l~~~-~ 270 (302)
T PRK03926 194 LSSIGKISEKGEELILSGDYVSLGELMNINQGLLDAL--GVSTKELSELIYAARTAGALGAKITGAGGGGCMVALAAP-E 270 (302)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhCCCceeeeccCCCCCEEEEEecc-c
Confidence 5556677778889999999999999999998776665 4789999999999877 8999999999999999999986 4
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeecCC
Q 001402 1057 SATELRRMLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1057 ~ae~i~~~L~~~~~f~v~v~~~~i~~ 1082 (1084)
.++++.+.+++. ..++|...++.
T Consensus 271 ~~~~~~~~~~~~---~~~~~~~~~~~ 293 (302)
T PRK03926 271 KQSEVATAIKIA---GGKPIITKITD 293 (302)
T ss_pred cHHHHHHHHHhc---CCeEEEEecCC
Confidence 677888888875 35667777654
No 20
>PTZ00298 mevalonate kinase; Provisional
Probab=100.00 E-value=1.3e-31 Score=305.65 Aligned_cols=297 Identities=18% Similarity=0.177 Sum_probs=219.9
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcC-CCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTK-MSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~-~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
....++|||+.|+|||++. +|...+.++|+++.. ++++..+ +..+.+..... .+ +...
T Consensus 10 ~~~~~~~~kvil~GEHaVv------yg~~aI~~~I~~~d~----~~i~~~~~~~~~~~~~~~~---------~~--~~~~ 68 (328)
T PTZ00298 10 TGKHIGYGKVILFGEHFVV------YGAEAIVAGIDEYTE----CRLELTKGVPGLQVVDQRP---------AV--PGYI 68 (328)
T ss_pred ccCCCcCeeEEEEecceee------cCCchhhhecccceE----EEEEEccCCCCceeccccc---------cc--cchH
Confidence 3577899999999999998 488899999999864 4444322 22222211100 01 1000
Q ss_pred CChHHH-HHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-h
Q 001402 818 NDPFRL-VKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-L 895 (1084)
Q Consensus 818 ~~~~~l-vkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~ 895 (1084)
.+--++ .+++........ ......|++|+|.++||.|+|||||||+++|++.|++++++.+++.++|+++|..+|+ +
T Consensus 69 ~~~~n~~~~a~~~~~~~~~-~~~~~~g~~I~I~~~IP~gaGLGSSsA~avA~l~al~~l~~~~ls~~el~~~a~~~E~~~ 147 (328)
T PTZ00298 69 VEKREEQRKAHQLVLRHLN-IDTSVDGLKMHLGGPLVPSSGIGASASDVVSLSRALSELYQLNLTEEEVNLSAFVGEGGY 147 (328)
T ss_pred HHhHHHHHHHHHHHHHHHh-cccCCCCeEEEEECCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 011122 233222221110 0011259999999999999999999999999999999999999999999999999999 4
Q ss_pred cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHH
Q 001402 896 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 975 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~ 975 (1084)
.|.++|. |++++++||+.+++..++. ..+.++++++ +..+++++|+.+++|.++++.+.+.....+..+.
T Consensus 148 ~g~~sG~-D~~~~~~Gg~~~~~~~~g~---~~~~~l~~~~------~~~lvv~~~~~~~sT~~~~~~v~~~~~~~p~~~~ 217 (328)
T PTZ00298 148 HGTPSGA-DNTAATYGGLISYRRVNGK---SVFKRIAFQQ------PLYLVVCSTGITASTTKVVGDVRKLKENQPTWFN 217 (328)
T ss_pred cCCCChH-HHHHHHcCCeEEEecCCCc---cceeEecCCC------CCeEEEEECCCchhHHHHHHHHHHHHhcCHHHHH
Confidence 6889997 8889999999887754432 1345655443 4579999999999999998765332211222223
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcC
Q 001402 976 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD 1054 (1084)
Q Consensus 976 ~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~ 1054 (1084)
..++++.+++.++..+|.++|++.++++|+++|+.++.+. +++|+++++++.+++ |++|+||||||+|||+++|+++
T Consensus 218 ~~~~~~~~~~~~~~~al~~~d~~~lg~~m~~~~~~l~~~~--v~~p~l~~l~~~~~~~Ga~gaklSGsG~GG~v~al~~~ 295 (328)
T PTZ00298 218 RLLENYNACVSEAKEALQKGNLFRVGELMNANHDLCQKLT--VSCRELDSIVQTCRTYGALGAKMSGTGRGGLVVALAAS 295 (328)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHhCCCceeEeccCCCCeEEEEEecc
Confidence 4466677788889999999999999999999998888774 789999999999987 8999999999999999999987
Q ss_pred hhhHHHHHHHHHhcC
Q 001402 1055 AESATELRRMLEKDS 1069 (1084)
Q Consensus 1055 ~~~ae~i~~~L~~~~ 1069 (1084)
++.++++.+.+++..
T Consensus 296 ~~~a~~~~~~l~~~~ 310 (328)
T PTZ00298 296 EDQRDAIAKAVRARC 310 (328)
T ss_pred hhhHHHHHHHHHHHh
Confidence 778888888887753
No 21
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=99.96 E-value=1.9e-26 Score=249.78 Aligned_cols=310 Identities=20% Similarity=0.237 Sum_probs=217.3
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCC---------
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTP--------- 810 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~--------- 810 (1084)
..++|||+|.|+|||... ||...+.+||+++++ +++.+..+..|.+.-.+..-...+++.+
T Consensus 5 l~vsaPGKvILfGEHAVV------yg~~AlAaai~LrTy----l~l~~san~~i~l~l~di~~~~~w~l~~~~~~l~~~~ 74 (397)
T KOG1511|consen 5 LLVSAPGKVILFGEHAVV------YGRTALAAAIDLRTY----LRLQTSANDRILLQLPDISIEKAWSLADFNGALPEQR 74 (397)
T ss_pred eeecCCccEEEeccceeE------ECCceeEEEeeccee----EEEEecCCCeEEEecccCCceEEEEhhhhhhhhhhhh
Confidence 578999999999999877 599999999999998 5555655555655422111111122221
Q ss_pred -----CCCCCCC--------------CChHH-HHHHHHHH----hhhhhhhcccccC----EEEEEEecCCCCCCCChHH
Q 001402 811 -----IATPFDH--------------NDPFR-LVKSALLV----TGVIHEKLIESMG----LQIRTWANVPRGSGLGTSS 862 (1084)
Q Consensus 811 -----l~~p~~~--------------~~~~~-lvkaal~~----~g~~~~~~~~~~G----~~I~i~S~IP~GsGLGSSS 862 (1084)
-++|... +...- ...+++.. ++.. ...+| +++.++|++|.|+|||||+
T Consensus 75 ~~~~~~q~p~~~~~~e~~k~l~~l~~~~~~~~~~~a~~~~lYlf~~l~----~~~~g~lp~~~v~v~SelP~GaGLGSSA 150 (397)
T KOG1511|consen 75 STYESVQTPASEVRVELLKQLGGLLENQEKVKEHLAGLSFLYLFLGLC----LRAPGTLPALTVVVDSELPLGAGLGSSA 150 (397)
T ss_pred hhhhccCCcchhhhHHHHHHhhhhhhcchhhhHHHHHHHHHHHHHHhh----hcccCCCcceEEEEeccCCCcCCcchhH
Confidence 1111100 00000 11111111 1111 13345 9999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCH-----------HHHHHHHHHHHHh-cCCCCcccchhhhcccceEEEecCCCccceeEEEE
Q 001402 863 ILAAAVVKALLQITDGDQSN-----------ENVARLVLLLEQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIP 930 (1084)
Q Consensus 863 AlavA~l~Al~~l~g~~ls~-----------~eLa~la~~~E~~-~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~p 930 (1084)
|+.|+++.++..++|.--.+ +-|-+.|.+.|.. -|+|+|+| .+.|.|||...+. +|. +++.
T Consensus 151 a~sv~lAtall~~~g~i~~p~~~~~~~e~~l~Li~~WAf~gE~~iHGtpSGiD-naV~t~Gg~i~f~--kg~----~~~~ 223 (397)
T KOG1511|consen 151 AISVALATALLRLAGLIPPPGSNLSLAENDLALINKWAFEGEKCIHGTPSGID-NAVCTYGGLISFK--KGV----EIES 223 (397)
T ss_pred HHHHHHHHHHHHHcccCCCCcchhccccchHHHHHHHHhccceeecCCCcccc-hhhhccCceEEee--cCc----ccee
Confidence 99999999999988864222 3355678888885 48999995 4568999987664 342 2333
Q ss_pred ccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhc----CHH---HHHHH
Q 001402 931 LLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNC----DVD---ELGKI 1003 (1084)
Q Consensus 931 l~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~g----D~~---~lg~l 1003 (1084)
+...+ ..+++|++|.++|+|+.+++.|.....+-++.+...+..+.+++.+++..+.++ +.. .+.++
T Consensus 224 Lk~~~------~L~illtnTrv~RnTk~lVa~Vr~~~~kfPevi~~i~~aid~is~ea~~il~~e~~~~~~~~Eq~L~eL 297 (397)
T KOG1511|consen 224 LKHLP------PLRILLTNTRVPRNTKALVAGVRELLEKFPEVIKAIFDAIDEISLEAVWILQRENDEFSSPKEQKLEEL 297 (397)
T ss_pred cccCC------CceEEEEccccCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHH
Confidence 43222 468999999999999999999876654444445566778888888888888842 222 59999
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcChh---hHHHHHHHHHhcCCCCcEEEEeec
Q 001402 1004 MLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE---SATELRRMLEKDSNFNSEVYNWNI 1080 (1084)
Q Consensus 1004 m~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~~~---~ae~i~~~L~~~~~f~v~v~~~~i 1080 (1084)
|.-++.++..++ +++|.++.++....+.....||||||+|||++.|.+... ..+.+++.|+.. +| +||...+
T Consensus 298 i~iNq~LL~alG--VsH~~le~v~~~t~k~gi~sKLTGAGgGGc~itlL~~~~~qe~i~~~ke~L~s~-gf--~v~~t~l 372 (397)
T KOG1511|consen 298 IRINQDLLDALG--VSHPSLELVCTTTRKLGIHSKLTGAGGGGCVITLLKPGTEQEQIDKWKEELESH-GF--EVFETEL 372 (397)
T ss_pred HHHhHHHHHHhC--CCcHHHHHHHHHHHHhCcceecccCCCCceEEEEECCCCchHHHHHHHHHHHhc-Cc--ceeeccC
Confidence 999999999995 999999999999998777889999999999999998643 566677777766 33 4455444
Q ss_pred C
Q 001402 1081 Y 1081 (1084)
Q Consensus 1081 ~ 1081 (1084)
+
T Consensus 373 G 373 (397)
T KOG1511|consen 373 G 373 (397)
T ss_pred C
Confidence 3
No 22
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.93 E-value=2.3e-24 Score=241.83 Aligned_cols=274 Identities=19% Similarity=0.161 Sum_probs=199.1
Q ss_pred EEEEeceEEee----eccccc-cCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCC
Q 001402 740 VKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 740 v~v~aP~Ri~L----~Ge~tD-~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
+.++||||||| .|.|.| | |...++.+||+++.+ +++++.++..+.+..... . .|
T Consensus 3 ~~~~apakinl~l~i~g~~~dg~------h~l~si~~ai~l~~~----v~v~~~~~~~~~i~~~~~---------~--~~ 61 (286)
T PRK00128 3 ILEKAPAKINLSLDVLGKREDGY------HEVEMIMQTIDLADR----LEIEKLKEDGIVVESNNR---------Y--VP 61 (286)
T ss_pred EEEeccceEEEEeecCccCCCCc------ceeheeeEecCCCcE----EEEEECCCCCEEEEeCCC---------C--CC
Confidence 67899999999 799999 4 588899999999986 677766544455543211 1 12
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
.+ +.+++..++..+. +......|++|++.++||.|+|||||||+++|++.|++++++.++++++++++|..+|.
T Consensus 62 ~~---~~n~~~~~~~~~~---~~~~~~~~~~i~i~~~iP~~~GLGSSsa~a~a~~~al~~~~~~~l~~~~l~~~a~~~g~ 135 (286)
T PRK00128 62 ND---ERNLAYKAAKLLK---ERYNIKQGVSITIDKNIPVAAGLAGGSSDAAATLRGLNKLWNLGLSLEELAEIGLEIGS 135 (286)
T ss_pred CC---CCcHHHHHHHHHH---HhcCCCCCeEEEEEcCCCccccchHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCC
Confidence 11 2234444443331 12223468999999999999999999999999999999999999999999999988863
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
|++++++||+.+.... +. .+.+++.++ +..+++++|+...+|.++++.+..... .
T Consensus 136 ---------dv~~~~~Gg~~~~~~~-g~----~~~~~~~~~------~~~~vv~~p~~~~~T~~~~~~~~~~~~-~---- 190 (286)
T PRK00128 136 ---------DVPFCIYGGTALATGR-GE----KITPLKSPP------SCWVVLAKPDIGVSTKDVYKNLDLDKI-S---- 190 (286)
T ss_pred ---------CCCeEeeCCeEEEecC-Cc----ccccCCCCC------CcEEEEEcCCCCCCHHHHHhcCccccc-c----
Confidence 8889999999887643 32 234444332 357999999999999887754311000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 1053 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~ 1053 (1084)
...+..+..++.++|++.++++|.+..+..+. ...|+++++++.+++ |++|+++||||+ ++++|++
T Consensus 191 -------~~~~~~~~~~l~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~l~~~~~~~Ga~g~~lSGsG~--sv~~l~~ 257 (286)
T PRK00128 191 -------HPDTEKLIEAIEEGDYQGICANMGNVLENVTL----KKYPEIAKIKERMLKFGADGALMSGSGP--TVFGLFD 257 (286)
T ss_pred -------CcchHHHHHHHhcCCHHHHHHhccCcHHHHHH----hhChHHHHHHHHHHhcCCCeeEEcccCc--cEEEEeC
Confidence 01235678899999999999988654322111 135999999999987 899999999996 9999998
Q ss_pred ChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1054 DAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1054 ~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
+++.++++.+.+++.. ..++.+++.
T Consensus 258 ~~~~~~~i~~~l~~~~---~~~~~~~~~ 282 (286)
T PRK00128 258 DESRAQRIYNGLKGFC---KEVYLVRTL 282 (286)
T ss_pred CHHHHHHHHHHhHhhc---CcEEEEeee
Confidence 8777889999998752 245555544
No 23
>PLN02451 homoserine kinase
Probab=99.93 E-value=1e-23 Score=242.95 Aligned_cols=305 Identities=18% Similarity=0.127 Sum_probs=210.2
Q ss_pred CCCCCCCeEEEEeceEEeeeccccccCCcccCCCceEEEEeee-cCcccceeEEEEEcCC---CcEEEEeCCCCceeeec
Q 001402 732 DHPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS-LESSLPIGTIIETTKM---SGVLISDDAGNQLHIED 807 (1084)
Q Consensus 732 ~~~~~~~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~-l~~~~pi~v~v~~~~~---~~i~i~s~~~~~~~~~~ 807 (1084)
+.++.-+.+.+++|+++.++|.++|+ +++|+| +|.. +++++.++ ..+.+....+.
T Consensus 46 ~~~~~~~~~~~~aPA~~ANLGpgfD~-----------lG~a~d~l~d~----v~~~~~~~~~~~~~~i~~~~g~------ 104 (370)
T PLN02451 46 EPEPVFTSVKAFAPATVANLGPGFDF-----------LGCAVDGLGDF----VTARVDPGVRPGEVSISEITGD------ 104 (370)
T ss_pred CchhhcceEEEEeccchhhcccChhh-----------hhhhhccCcCE----EEEEECCCCCcccEEEEEeccc------
Confidence 33344457899999999999999998 678888 8876 66776543 24555431111
Q ss_pred CCCCCCCCCC-CChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHH
Q 001402 808 LTPIATPFDH-NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVA 886 (1084)
Q Consensus 808 l~~l~~p~~~-~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa 886 (1084)
...+ |.++ +| . ..+++...+.. ......|++|++.++||.|+|||||||+++|++.|+++++|.++++++|+
T Consensus 105 ~~~l--~~~~~~N-l-v~~a~~~~~~~---~g~~~~gv~I~i~k~IP~g~GLGSSaA~avA~l~aln~l~g~~ls~~eL~ 177 (370)
T PLN02451 105 TGRL--SKDPLRN-C-AGIAAIATMKL---LGIRSVGLSLSLHKGLPLGSGLGSSAASAAAAAVAVNELFGSPLGKDDLV 177 (370)
T ss_pred cccC--CCCcccC-c-HHHHHHHHHHH---cCCCCCCEEEEEeCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 0112 2221 22 1 23444333321 12234699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHH
Q 001402 887 RLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTR 966 (1084)
Q Consensus 887 ~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~ 966 (1084)
+++..+|..... .+.||.+++++||+.+....+. . .+.+++++. ..++++++++|+...+|+++.+.+...
T Consensus 178 ~la~~~E~~v~g-~h~Dnva~a~~GG~v~~~~~~~--~--~~~~~~~p~----~~~~~~Vlv~P~~~~sT~~ar~~lp~~ 248 (370)
T PLN02451 178 LAGLESEAKVSG-YHADNIAPALMGGFVLIRSYEP--L--HLIPLRFPS----AKDLFFVLVSPDFEAPTKKMRAALPKE 248 (370)
T ss_pred HHHHHHhchhcC-CCccchhHhhcCCEEEEEecCC--C--eEEEeecCC----CCCeEEEEEcCCCCccHHHHHHHHhhh
Confidence 999999984322 2456666689999988864432 2 234444331 024689999999888888876543221
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCcc
Q 001402 967 YLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGG 1045 (1084)
Q Consensus 967 ~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgG 1045 (1084)
+ .. .+.+..+.. ...+..+|.++|++.++++|++.+....... ...|+++++++.+.+ |++|++|||||+
T Consensus 249 ~-~~----~~~v~~~~~-~~~l~~al~~~d~~~l~~~m~nD~~~e~~r~--~~~P~l~~l~~~~~~~GA~ga~mSGSGp- 319 (370)
T PLN02451 249 I-PM----KHHVWNCSQ-AAALVAAILQGDAVLLGEALSSDKIVEPTRA--PLIPGMEAVKKAALEAGAYGCTISGAGP- 319 (370)
T ss_pred c-ch----hhHHHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhHHHHh--hhCccHHHHHHHHHHCCCeEEEEEccch-
Confidence 1 11 011111211 2456789999999999999986532212221 356999999999987 999999999999
Q ss_pred ceeEEEEcChhhHHHHHHHHHhcC----CCCcEEEEeecCCC
Q 001402 1046 GFALLLAKDAESATELRRMLEKDS----NFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1046 G~viaL~~~~~~ae~i~~~L~~~~----~f~v~v~~~~i~~~ 1083 (1084)
++|+|+++++.++++.+.+++.+ +...+++...++.+
T Consensus 320 -tvfal~~~~~~a~~i~~~l~~~~~~~~~~~~~~~~~~~d~~ 360 (370)
T PLN02451 320 -TAVAVIDDEEKGEEVGERMVEAFRKAGNLKATASVKKLDRV 360 (370)
T ss_pred -heEEEEcCHHHHHHHHHHHHHHHHHhcCCCceEEEeccCCC
Confidence 99999987677888888887542 35678888888764
No 24
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=1.5e-23 Score=230.33 Aligned_cols=281 Identities=22% Similarity=0.221 Sum_probs=200.2
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
.+++++|+...++|.++|. +++|++++.. +.+....+ ...+..+... .+.+ |.+++
T Consensus 3 ~~~v~aPASSANlGpGFD~-----------lGlAl~~~~~----~~v~~~~~-~~~i~~~g~~------~~~i--P~~~~ 58 (299)
T COG0083 3 MMKVRVPASSANLGPGFDV-----------LGLALDLYND----VVVVEVVD-KFEIEVEGEG------ADKI--PLDPE 58 (299)
T ss_pred eEEEEEeecccccCCCccc-----------eeeeccccCc----EEEEEecC-cEEEEEeccc------ccCC--CCCcc
Confidence 4789999999999999998 8999999986 44444333 3444332211 0122 44444
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 898 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt 898 (1084)
+ -.++++...+. ......+++|+++++||.|+|||||+|.+||.+.|+|++++.+++++++.+++..+|.|
T Consensus 59 n--~~~~~~~~~~~----~~~~~~~~~i~i~k~IP~~rGLGSSaAsiVAal~aan~l~~~~L~~~~ll~~a~~~EgH--- 129 (299)
T COG0083 59 N--LVYQAALKFLE----ALGIEAGVKIRIEKGIPLGRGLGSSAASIVAALAAANELAGLPLSKEELLQLALEIEGH--- 129 (299)
T ss_pred e--eHHHHHHHHHH----HhCCCccEEEEEEcCCCCCCCCcHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhcCC---
Confidence 4 24455554443 22234459999999999999999999999999999999999999999999999999974
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCC---cchHHHHHHHHHHHHhhcChHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLI 975 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~---tr~T~~iL~~v~~~~~~~~~~~~ 975 (1084)
.||++++++||+.+.....+ +...+++++. ++.++++.|+. |+.+|++|++.+.. .+
T Consensus 130 ---pDNVapa~lGG~~l~~~~~~----~~~~~v~~~~------~~~~v~~iP~~e~sT~~aR~vLP~~~~~-----~d-- 189 (299)
T COG0083 130 ---PDNVAPAVLGGLVLVEEESG----IISVKVPFPS------DLKLVVVIPNFEVSTAEARKVLPKSYSR-----KD-- 189 (299)
T ss_pred ---CchHHHHhhCCEEEEeecCC----ceEEEccCCc------ceEEEEEeCCccccHHHHHHhccccCCH-----HH--
Confidence 48999999999877764222 3445565554 46888888865 55667788775432 12
Q ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEE
Q 001402 976 SSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRL--HQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA 1052 (1084)
Q Consensus 976 ~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~--~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~ 1052 (1084)
.+.++. .+.-++.||.++|.+.+..+|++..++ +..+ .|.+.++.+.+.+ |++|+.+||||+ ++++++
T Consensus 190 -aV~n~s-~~a~lv~al~~~~~~l~~~~~~D~ihepyR~~L-----~P~~~~v~~~a~~~gA~g~~lSGAGP--Ti~al~ 260 (299)
T COG0083 190 -AVFNLS-RAALLVAALLEGDPELLRAMMKDVIHEPYRAKL-----VPGYAEVREAALEAGALGATLSGAGP--TVFALA 260 (299)
T ss_pred -HHHHHH-HHHHHHHHHHcCCHHHHHHHhccccchhhhhhh-----CccHHHHHHHHhhCCceEEEEecCCC--eEEEEe
Confidence 233332 234688999999988888888877553 4444 4888999998887 999999999999 999999
Q ss_pred cChhhHHHHHHHHHhc--CCCCcEEEEeecCC
Q 001402 1053 KDAESATELRRMLEKD--SNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1053 ~~~~~ae~i~~~L~~~--~~f~v~v~~~~i~~ 1082 (1084)
++. .++.+.+.+++. .++...++.+..+.
T Consensus 261 ~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (299)
T COG0083 261 DES-DAEKAAALLEELYEQGIKGRVHILALDS 291 (299)
T ss_pred ccc-hhhHHHHHHHHHHHhCCcceEEEEeecC
Confidence 974 444444444332 14566777666543
No 25
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism]
Probab=99.92 E-value=2.5e-24 Score=243.57 Aligned_cols=310 Identities=18% Similarity=0.178 Sum_probs=199.2
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCc--EEEEeCCCCce-eeecCCC--CCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSG--VLISDDAGNQL-HIEDLTP--IAT 813 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~--i~i~s~~~~~~-~~~~l~~--l~~ 813 (1084)
..++++|||+||+|||+||. ++.|++||||.... +.+.+.++.. |++.+.+.... ....+.. .+-
T Consensus 39 ~~~a~~PgRVnLiGEHiDy~------~~sVlpmaid~~~l----~~~~~~~d~~~sl~~tN~~~~f~~~~~~~p~~~~~I 108 (489)
T KOG0631|consen 39 VFVARAPGRVNLIGEHIDYC------GYSVLPMAIDVDTL----IAVAPSDDGIVSLRLTNFNPDFIYFKYPLPSIVWQI 108 (489)
T ss_pred eEEEecCCceecccceeeec------CceeeeEEeeeeeE----EEEEEcCCCceeEEEecCCCccceeeccCCchhccc
Confidence 47899999999999999996 78899999999974 6677888777 44443222111 1111111 111
Q ss_pred CCCCCChHHHHHHHHHHhh-hh---hhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh-CCC--CCHHHHH
Q 001402 814 PFDHNDPFRLVKSALLVTG-VI---HEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQIT-DGD--QSNENVA 886 (1084)
Q Consensus 814 p~~~~~~~~lvkaal~~~g-~~---~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~-g~~--ls~~eLa 886 (1084)
..+...|.+|+++.+..+. .+ +.+.....|+.+...+++|.|+||+||||+..++..|..++. |.+ ..+++++
T Consensus 109 ~~~~~~w~ny~~C~~~g~h~~~~~~~~~~~~~vGl~~l~~g~vPtgsgLsSsaa~~c~a~lA~~~~~~gpn~~~~kkd~~ 188 (489)
T KOG0631|consen 109 DPDVSKWENYFYCGMKGFHEYIKRKPVRFEPPVGLSILNDGSVPTGSGLSSSAAWLCAAALATLKLNLGPNFIISKKDLA 188 (489)
T ss_pred CCCccchhhhhccchHHHHHHHhccccccCCCcceEEEecCCCCCCCCcchhHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence 1234579999955444332 11 111112359999999999999999999999999999988887 877 7899999
Q ss_pred HHHHHHHHhcCCCCcccchhhhcccceEEEecCC--CccceeEEEEccCChhhhhccCcEEEEEEcCCcc----------
Q 001402 887 RLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP--GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR---------- 954 (1084)
Q Consensus 887 ~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~--g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr---------- 954 (1084)
++....|.+.|+++|.|||++++++--......+ -.|+ +..+++.++ ...++|..+....
T Consensus 189 ~i~~~ae~~~G~~~gGmdq~asvl~~~~~Al~v~~~~~Pf--~~~~lk~~~------~~vfvI~~~L~~~nk~~~a~tny 260 (489)
T KOG0631|consen 189 TITVVAESYIGLNSGGMDQAASVLAEKGHALLVDPYFTPF--RRSMLKLPD------GGVFVIANSLVESNKAETAETNY 260 (489)
T ss_pred cceEEeecccCcCCCcHHHHHHHHHhcCceEEecccCCcc--ccccccCCC------CceEEEechhhhhcchhhhhhhh
Confidence 9999999999999999999999987543322222 1122 122233222 2356666542110
Q ss_pred --------hHHHHHHHH-----------------------------------HHHHhhcC---------------hHH--
Q 001402 955 --------LAHQVLQKV-----------------------------------VTRYLQRD---------------NLL-- 974 (1084)
Q Consensus 955 --------~T~~iL~~v-----------------------------------~~~~~~~~---------------~~~-- 974 (1084)
.+...+... ++..+..+ +..
T Consensus 261 nlRv~E~~ia~~~la~k~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~v~~~~~~e~f~~ee~~~~l~~~~~~f~~ 340 (489)
T KOG0631|consen 261 NLRVVEGTIAAGELAAKILVELPAYILRYQLQRAWRGDIGEGYERAEEMLGLVEESLKPEGFNIEEVARALGLDTEEFLQ 340 (489)
T ss_pred hceeEeeehhhHHHHHHhhcccHHHHHhhhhhhccccccchhHHHHHHHHHHHHhhcCcCCCCHHHHHHHhccchHHHHH
Confidence 011111100 00000000 000
Q ss_pred ------------HHHHHHHHHH------HHHHHHHHhh------cCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHH
Q 001402 975 ------------ISSIKRLTEL------AKNGRDALMN------CDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFA 1030 (1084)
Q Consensus 975 ------------~~~l~~l~~~------a~~~~~AL~~------gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a 1030 (1084)
....++-++. +.+...++.+ |.+..||+||+++|.+...+++ |++|++++|++++
T Consensus 341 ~~~T~~~v~~~~~k~~~rakHv~sea~rv~q~~~~~~~a~~~~d~~~~~~g~LmneS~~Sc~~~yE-cscpel~qL~kia 419 (489)
T KOG0631|consen 341 SLLTLAAVDLQVKKLYQRAKHVYSEALRVLQEEKLCARAPGRADGFLADFGRLMNESHRSCDVLYE-CSCPELDQLCKIA 419 (489)
T ss_pred HhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccchhhhHHHHHHHhhhhhHHHHHHHh-cCCHhHHHHHHHH
Confidence 0000010011 1112222222 3367899999999999999885 9999999999999
Q ss_pred cC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc
Q 001402 1031 DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1031 ~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~ 1068 (1084)
+. |++|+++||||||||.+.+++. +..+.+.+.+.+.
T Consensus 420 la~g~~gaRlTGaGwGGc~v~lvp~-d~~~~~~~~~~~~ 457 (489)
T KOG0631|consen 420 LANGGVGARLTGAGWGGCTVALVPA-DLVDFAVAALKEI 457 (489)
T ss_pred HhcCCccceeeccccccceeeeccc-cchHHHHHhhhhh
Confidence 98 8999999999999999999994 5677777776653
No 26
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.91 E-value=1.2e-22 Score=230.56 Aligned_cols=291 Identities=14% Similarity=0.135 Sum_probs=204.1
Q ss_pred eEEEEeceEEee----eccccc-cCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCC
Q 001402 739 TVKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT 813 (1084)
Q Consensus 739 ~v~v~aP~Ri~L----~Ge~tD-~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~ 813 (1084)
.++++||||||| .|+|.| | |.+.++.++|+++.+ +++++.++..+.+..... .+
T Consensus 3 ~~~~~apakiNL~L~i~g~~~dGy------~~l~~~~~~i~l~d~----v~v~~~~~~~~~~~~~~~---------~~-- 61 (312)
T PRK02534 3 SYTLIAPAKINLHLEILGDRPDGF------HELAMVMQSIDLADR----LELRNNGDGTIRLHCDHP---------QL-- 61 (312)
T ss_pred eEEEEeceEEEeccccCccCCCCC------CceEEEEEECCCCCE----EEEEECCCCcEEEEECCC---------CC--
Confidence 367899999999 799999 6 478889999999986 677776555555543211 11
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhhcccc-cCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 001402 814 PFDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 892 (1084)
Q Consensus 814 p~~~~~~~~lvkaal~~~g~~~~~~~~~-~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~ 892 (1084)
|.+ ..+++..++..+. +.+... .|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+
T Consensus 62 ~~~---~~n~~~~~~~~~~---~~~~~~~~~~~i~i~~~IP~~~GLGSssa~~~A~~~al~~~~~~~l~~~~l~~~a~~~ 135 (312)
T PRK02534 62 STD---DDNLIYRAAQLLR---KRFPFAEGGVDITLEKRIPIGAGLAGGSTDAAAVLVGLNLLWGLGLTQPELESLAAEL 135 (312)
T ss_pred CCC---chhHHHHHHHHHH---HHhCCCCCCeEEEEecCCCCcCCccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHh
Confidence 111 1235555554432 122222 689999999999999999999999999999999999999999999999887
Q ss_pred HHhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEE-EcCCcchHHHHHHHHHHHHhhc-
Q 001402 893 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVV-FTGQVRLAHQVLQKVVTRYLQR- 970 (1084)
Q Consensus 893 E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv-~tg~tr~T~~iL~~v~~~~~~~- 970 (1084)
|. |+.++++||+.+.... +. .+.++..++ ++.++++ +++...+|.++.+.........
T Consensus 136 g~---------dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~vv~~~p~~~~~T~~a~~~~~~~~~~~~ 195 (312)
T PRK02534 136 GS---------DVPFCIAGGTQLCFGR-GE----ILEPLPDLD------GLGVVLAKYPSLSVSTPWAYKTYRQQFGDTY 195 (312)
T ss_pred CC---------CCcEEeECCeEEEECC-CC----EeEECCCCC------CcEEEEEECCCCCccHHHHHHHHhhhccccc
Confidence 62 8889999999877643 32 246665443 4678887 6998888887765432111100
Q ss_pred --ChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHc-C-CCCeEEEcCCCccc
Q 001402 971 --DNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD-P-YCCGYKLVGAGGGG 1046 (1084)
Q Consensus 971 --~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~-~-ga~GaklSGAGgGG 1046 (1084)
.+.....+..+. ....+..+|.++|++.+++.|.+..+ +...+ ..|+++++++.+. + |++|+.|||+|+
T Consensus 196 ~~~~~~~~~~~~~~-~~~~l~~al~~~d~~~~~~~~~n~l~--~~~~~--~~~~i~~~~~~l~~~~Ga~~~~lSGsGp-- 268 (312)
T PRK02534 196 LSDEEDFEQRRQAL-RSGPLLQAISAKDPPPIAQLLHNDLE--KVVLP--EYPQVAKLLELLSSLPGCLGTMMSGSGP-- 268 (312)
T ss_pred ccCccccccccccc-chhHHHHhhhccCHHHHHHhhhCchH--HHhHh--cChHHHHHHHHHHhccCCCeeEEECcCc--
Confidence 000011112221 12346889999999999887753322 22211 4588898888776 6 999999999998
Q ss_pred eeEEEEcChhhHHHHHHHHHhcCC-CCcEEEEeecCCC
Q 001402 1047 FALLLAKDAESATELRRMLEKDSN-FNSEVYNWNIYLE 1083 (1084)
Q Consensus 1047 ~viaL~~~~~~ae~i~~~L~~~~~-f~v~v~~~~i~~~ 1083 (1084)
++|+|+++.+.++++.+.+++... ...+++.++++.+
T Consensus 269 tv~~l~~~~~~a~~~~~~l~~~~~~~~~~v~i~~~~n~ 306 (312)
T PRK02534 269 TCFALFESQEQAEQALEQVREAFADPGLDAWVCQFISH 306 (312)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHhccCceEEEEEEecCC
Confidence 999999987788889888877532 3457888887754
No 27
>PRK01212 homoserine kinase; Provisional
Probab=99.91 E-value=9.8e-23 Score=230.38 Aligned_cols=287 Identities=19% Similarity=0.158 Sum_probs=200.9
Q ss_pred CeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCC-C-c--EEEEeCCCCceeeecCCCCCC
Q 001402 738 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-G--VLISDDAGNQLHIEDLTPIAT 813 (1084)
Q Consensus 738 ~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~-~-~--i~i~s~~~~~~~~~~l~~l~~ 813 (1084)
+.+.+++|+|..++|.++|+ +++||++|.+ +++++.++ . . +.+..... .++
T Consensus 2 ~~~~v~~pat~anlg~gfd~-----------lG~al~~~d~----l~~~~~~~~~~~~~~~~~~~~~--------~~~-- 56 (301)
T PRK01212 2 MMVKVRVPATSANLGPGFDS-----------LGLALSLYDE----VLVGDVVSVEAEFSIEVIGEGA--------DKL-- 56 (301)
T ss_pred ceEEEEEecchhhcccChhh-----------hhccccCccE----EEEEEccCCCCceEEEEEecCC--------CcC--
Confidence 34789999999999999998 7899999986 66665443 1 2 33321110 012
Q ss_pred CCC-CCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 001402 814 PFD-HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 892 (1084)
Q Consensus 814 p~~-~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~ 892 (1084)
|.+ ..+ ++..++..+. +......|++|++.++||.++|||||||+++|++.|++++++.+++.++|+++|..+
T Consensus 57 p~~~~~N---li~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSa~aaA~l~al~~l~~~~l~~~eL~~~a~~~ 130 (301)
T PRK01212 57 PLDPEKN---LVYQAALKFL---EKLGKPPGLRIELEKNIPLGRGLGSSAASIVAGLVAANELAGLPLSKEELLQLATEG 130 (301)
T ss_pred CCCCccc---cHHHHHHHHH---HHcCCCCCeEEEEEeCCCCCCCCcHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 222 112 3333333321 112234689999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcCh
Q 001402 893 EQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDN 972 (1084)
Q Consensus 893 E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~ 972 (1084)
|.+ .+|++++++||+.+.....+ ..+.+++.++ ++++++++|+...+|.++.+...+. .+
T Consensus 131 e~~------~ddv~~~l~GG~~~~~~g~g----~~~~~~~~~~------~~~~vlv~p~~~~sT~~a~~~l~~~---~~- 190 (301)
T PRK01212 131 EGH------PDNVAPALLGGLVLALEENG----VISVKIPVFD------DLKWVVAIPNIELSTAEARAVLPKQ---YS- 190 (301)
T ss_pred cCC------HHHHHHHHhCCEEEEEECCc----eEEEEecCCC------CeEEEEEECCCcCCHHHHHHhCcCc---CC-
Confidence 973 26888899999988752223 2456665443 4579999999888888776432110 01
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEE
Q 001402 973 LLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL 1051 (1084)
Q Consensus 973 ~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL 1051 (1084)
....+.++.. +..+..+|.++|++.++++|++.++..... ...|+++++++.+++ |++|++|||||+ |+++|
T Consensus 191 -~~~~~~~~~~-~~~l~~al~~~d~~~~~~~~~~~~~~~~~~---~~~p~~~~i~~~~~~~Ga~g~~~SGsGp--tv~~l 263 (301)
T PRK01212 191 -LKDAVFNSSR-AALLVAALYTGDYELAGRAMKDVLHEPYRA---KLIPGFAEVRQAALEAGALGAGISGAGP--TVFAL 263 (301)
T ss_pred -HHHHHHHHHH-HHHHHHHHhhCCHHHHHHHhchhheHHhHH---hhCCCHHHHHHHHHHCCCeEEEEEchhh--heeEE
Confidence 0112222322 345788999999999999986543321111 124889999999877 899999999986 99999
Q ss_pred EcChhhHHHHHHHHHhcC--CCCcEEEEeecCCC
Q 001402 1052 AKDAESATELRRMLEKDS--NFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1052 ~~~~~~ae~i~~~L~~~~--~f~v~v~~~~i~~~ 1083 (1084)
+++.+. +++.+.+++.. +...+++.+.++.+
T Consensus 264 ~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~ 296 (301)
T PRK01212 264 CDKEDA-EKVADALQKAFLQGIEGFVHVLRLDTA 296 (301)
T ss_pred eccccH-HHHHHHHHHhhccCCCeEEEEeccCCC
Confidence 987555 78888887753 45778888887764
No 28
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase. Members of this family of GHMP kinases were previously designated as conserved hypothetical protein YchB or as isopentenyl monophosphate kinase. It is now known, in tomato and E. coli, to encode 4-diphosphocytidyl-2C-methyl-D-erythritol kinase, an enzyme of the deoxyxylulose phosphate pathway of terpenoid biosynthesis.
Probab=99.91 E-value=4.8e-22 Score=223.32 Aligned_cols=277 Identities=18% Similarity=0.111 Sum_probs=189.7
Q ss_pred EEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCCh
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDP 820 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~~ 820 (1084)
+++|||||||+|+|+|+-+=. .|...++.++|+++.+ +++++.++..+.+.+... ++ |.+ +
T Consensus 3 ~~~apaKiNL~l~i~~~r~dG-yH~l~sl~~~i~l~d~----v~i~~~~~~~i~~~~~~~---------~~--~~~--~- 63 (293)
T TIGR00154 3 VFPSPAKLNLFLYITGKRPDG-YHELQTLMQFLDLGDK----IIISVRSDDDIRLLKGDF---------DV--PLE--E- 63 (293)
T ss_pred eEeecccEEEEEecCCcCCCC-CcceEEEEEEeccCcE----EEEEECCCCcEEEeeCCC---------CC--CCC--C-
Confidence 468999999999999983100 0344599999999986 667776665566543211 11 111 1
Q ss_pred HHHHHHHHHHhhhhhhhcc----cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 001402 821 FRLVKSALLVTGVIHEKLI----ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 896 (1084)
Q Consensus 821 ~~lvkaal~~~g~~~~~~~----~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~ 896 (1084)
+++..++..+. +... ...|++|++.++||.|+|||||||.++|++.|++++++.++++++++++|..+|.
T Consensus 64 -nlv~~a~~~l~---~~~~~~~~~~~~~~i~i~~~iP~~aGLGsssa~aaa~l~al~~~~~~~l~~~~l~~la~~lg~-- 137 (293)
T TIGR00154 64 -NLIYRAAQLLK---NFANSKIKSLDGANIEIDKNIPMGAGLGGGSSDAATVLVGLNQLWQLGLSLEELAELGLTLGA-- 137 (293)
T ss_pred -cHHHHHHHHHH---HHhcccccCCCCeEEEEeccCCCCCCcchhHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence 46766665542 1221 2468999999999999999999999999999999999999999999999988852
Q ss_pred CCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHH
Q 001402 897 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 976 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~ 976 (1084)
|..++++||..+.... |. .+.++..++ +..+++++|+...+|.++.+.+. .......
T Consensus 138 -------Dv~~~~~gg~~~~~g~-ge----~~~~l~~~~------~~~~vl~~p~~~~sT~~~~~~l~--~~~~~~~--- 194 (293)
T TIGR00154 138 -------DVPFFVSGHAAFATGV-GE----IITPFEDPP------EKWVVIAKPHVSISTPVVYQAYK--LPRNTPK--- 194 (293)
T ss_pred -------CcceEEECCeEEEEec-Cc----EEEECCCCC------CcEEEEEcCCCCcChHHHHHhhh--hcccCcc---
Confidence 8889999999887644 32 234554332 45789999999999999886542 1011000
Q ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcCh
Q 001402 977 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 977 ~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~ 1055 (1084)
....+..++..++++.+...+.+..+ ... ....|+++++++.+.+ |+++++|||||+ |+|+|+++.
T Consensus 195 -------~~~~l~~~~~~~~~~~~~~~~~ndle---~~~-~~~~p~l~~i~~~l~~~Ga~~a~mSGSG~--tvf~l~~~~ 261 (293)
T TIGR00154 195 -------RAKEWLKKISLECLQLLDSNGLNDLE---KVA-LKRHTEVAQALNWLLEYGLAPERLSGSGA--CVFALFDME 261 (293)
T ss_pred -------hhHHHHHHHhhccHHHHhhhhcCccH---HHH-HhcCHHHHHHHHHHHhCCCCeEEEecccc--ceEEEeCCH
Confidence 11223445555555544333222221 110 0146999999999987 899999999976 999999987
Q ss_pred hhHHHHHHHHHhcC-CCCcEEEEe
Q 001402 1056 ESATELRRMLEKDS-NFNSEVYNW 1078 (1084)
Q Consensus 1056 ~~ae~i~~~L~~~~-~f~v~v~~~ 1078 (1084)
+.++++.+.+++.. .+...++.+
T Consensus 262 ~~a~~~~~~~~~~~~~~~~~~~~~ 285 (293)
T TIGR00154 262 SEAEQVLEQAPEWLNGFVAKGYNV 285 (293)
T ss_pred HHHHHHHHHhHHHhhhheeeeEEe
Confidence 77888888776432 233355554
No 29
>PTZ00299 homoserine kinase; Provisional
Probab=99.90 E-value=1.8e-22 Score=228.95 Aligned_cols=288 Identities=16% Similarity=0.135 Sum_probs=197.6
Q ss_pred CCeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCC
Q 001402 737 PRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 737 ~~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
...+.+++|+...++|.++|. |++|+++|.+ +++++.+...+.+...... .+ |.+
T Consensus 5 ~~~~~v~vPATsANlGpGFDs-----------LGlAL~lyd~----v~v~~~~~~~i~i~G~~~~--------~l--p~~ 59 (336)
T PTZ00299 5 PKKVVLRVPATTANIGPAYDT-----------LGMALSIFME----LTVEHADAFSMTVEGEGSE--------HI--STD 59 (336)
T ss_pred CceEEEEEecccccccccHHH-----------HhhhcccCcE----EEEEECCCCEEEEecCCcC--------CC--CCC
Confidence 345899999999999999998 7899999976 7777654433434321110 11 222
Q ss_pred CCChHHHHHHHHHHhhhhhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCC---HHHHHHHHHHH
Q 001402 817 HNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQS---NENVARLVLLL 892 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls---~~eLa~la~~~ 892 (1084)
+.+ ..++++...+.. ... ..+|++|++.++||.++|||||||.++|++.+++++++.+++ .++|+++|..+
T Consensus 60 ~~n--lv~~a~~~~~~~---~~~~~~~g~~i~i~k~IP~~~GLGSSsA~avA~l~a~n~l~g~~l~~~~~~el~~~A~~~ 134 (336)
T PTZ00299 60 EDN--MVVQACRLAFEE---YAHKSMPPLKFIMHSNIPYGCGCGSSSAAAVAGFVAGMKLCGLTMETENEEALLQAIAKF 134 (336)
T ss_pred cch--HHHHHHHHHHHH---hcCCCCCceEEEEecCCCccCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHhh
Confidence 112 133444333221 111 125899999999999999999999999999999999999995 89999999999
Q ss_pred HHhcCCCCcccchhhhcccceEEEecCC-CccceeEEEEccCChhhhhccCcEEEEEEcCC-----cchHHHHHHHHHHH
Q 001402 893 EQLMGTGGGWQDQIGGLYPGIKFTSSFP-GIPLRLQVIPLLASPQLILELQQRLLVVFTGQ-----VRLAHQVLQKVVTR 966 (1084)
Q Consensus 893 E~~~gt~~G~~Dq~a~~~GG~~~~~~~~-g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~-----tr~T~~iL~~v~~~ 966 (1084)
|.| .||++++++||+.+....+ +. ....+++.++ ++.++++.|.. |..++++|++.+..
T Consensus 135 EGH------pDNVapal~GG~~~~~~~~~ge---~~~~~i~~~~------~~~~vv~iP~~~~~~sT~~aR~vLP~~v~~ 199 (336)
T PTZ00299 135 EGH------PDNAAPAIYGGIQLVYKKDNGR---FLTYRVPTPP------NLSVVLFVPHNKMKANTHVTRNLIPTSVSL 199 (336)
T ss_pred cCC------cccHHHHHhCCEEEEEecCCCc---eEEEecCCCC------CeEEEEEECCCCccccHHHHHhhCcccCcH
Confidence 964 4779999999998876433 32 2234555543 46788887864 44455555443321
Q ss_pred HhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCcc
Q 001402 967 YLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGG 1045 (1084)
Q Consensus 967 ~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgG 1045 (1084)
.+.+.++... ..+..+|.++|++.+..+.+..|+..+.. -..|.++++.+.+.+ |++|+.|||||+
T Consensus 200 --------~dav~n~~~~-~~lv~al~~~d~~ll~~~~D~lhep~R~~---~liP~~~~v~~~~~~~Ga~g~~lSGSGP- 266 (336)
T PTZ00299 200 --------EDAVFNISRT-SILVLALSTGDLRMLKSCSDKLHEQQRSD---ALFPHFRPCVKAAREAGAHYAFLSGAGP- 266 (336)
T ss_pred --------HHHHHhhhHH-HHHHHHHHhCCHHHHHhchhcccCccccc---ccCccHHHHHHHHHHCCCeEEEEEchhh-
Confidence 1222333222 24788999999999865322233322111 235899999999977 999999999999
Q ss_pred ceeEEEEcC-----------hhhHHHHHHHHHhc---CCCCcEEEEeecCCC
Q 001402 1046 GFALLLAKD-----------AESATELRRMLEKD---SNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1046 G~viaL~~~-----------~~~ae~i~~~L~~~---~~f~v~v~~~~i~~~ 1083 (1084)
++|+|+++ ++.++++.+++.+. .+...+++...++.+
T Consensus 267 -Tv~al~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (336)
T PTZ00299 267 -SVCALVGGRHGDPLTQPREERKAESVAEAMIKAAEAVGVAGRVIITQPSDQ 317 (336)
T ss_pred -hheEEeccccccccccccchhHHHHHHHHHHHHHHHcCCceEEEEccCCCC
Confidence 99999982 44577888888774 346778888888754
No 30
>TIGR00191 thrB homoserine kinase. P.aeruginosa homoserine kinase seems not to be homologous (see PROSITE:PDOC0054)
Probab=99.90 E-value=4.7e-22 Score=224.77 Aligned_cols=286 Identities=17% Similarity=0.143 Sum_probs=188.7
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEE----cCCC-cEEEEeCCCCceeeecCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET----TKMS-GVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~----~~~~-~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
+.+++|+...++|.++|. +++|+++|.. ++++. .... .+.+..... ..+ |
T Consensus 1 ~~v~vpatsaNlg~GfD~-----------lg~al~~~~~----~~~~~~~~~~~~~~~~~~~~~~~--------~~~--p 55 (302)
T TIGR00191 1 FRVKVPASSANLGPGFDV-----------LGAALSLYLG----LTVTDVVAQESDDTEIEAEGEGV--------EKI--P 55 (302)
T ss_pred CEEEEecchhccccChhh-----------hhhhccccce----EEEEeeecccCCCceEEEEeccc--------ccC--C
Confidence 367899999999999998 8899999975 44543 2221 133321100 112 2
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhcccc-cCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~~~~-~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
.++. -|++..++..+- +..... .|++|++.++||.|+|||||||+++|++.|++++++.+++.++|+++|..+|
T Consensus 56 ~~~~--~Nlv~~a~~~~~---~~~g~~~~g~~i~i~~~IP~~~GLGSSsa~~vA~l~a~~~l~~~~l~~~el~~~a~~~E 130 (302)
T TIGR00191 56 TEPT--DNLIYQVAKRFL---DQLGIRMPPVKVTLEKNIPLGRGLGSSAAAIVAALAAANELCGLPLSKERLLDYASELE 130 (302)
T ss_pred CCcc--cccHHHHHHHHH---HHcCCCCCCEEEEEEcCCCCcCCCChHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhc
Confidence 2201 124433333321 112223 6899999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChH
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
.+ .||++++++||+.+....++. +...+++.++ +.++++++|+...+|++..+.+.+.+ ..
T Consensus 131 ~h------~Dnv~~~l~GG~~~~~~~~~~---~~~~~~~~~~------~~~~vl~~p~~~~sT~~a~~~lp~~~-~~--- 191 (302)
T TIGR00191 131 GH------PDNVAPALLGGFQLAFVEDDK---LEVLKIPIFS------KLDWVLAIPNIEVSTAEARAVLPKAY-PR--- 191 (302)
T ss_pred CC------cccHHHHhccCEEEEEEcCCc---eEEEEeCCCC------CEEEEEEECCCcccHHHHHHhCcccC-CH---
Confidence 63 467888999999887644331 2223333222 46899999998888877643221111 01
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH--HHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEE
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEA--WRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s--~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~via 1050 (1084)
.+.+.++... ..+..+|.+++.+ +++.+.+. |+..+. ...|+++++++.+++ |++|++|||||+ ++++
T Consensus 192 -~~~v~~~~~~-~~l~~al~~~~~~-l~~~~~~d~l~e~~~~----~l~p~l~~i~~~~~~~Ga~g~~lSGsGp--tv~a 262 (302)
T TIGR00191 192 -QDLVFNLSHL-AGLVHAIYQKKPD-LGAIMMKDRIHQPYRE----SLIPNLFKIKQAALEKGAYGITISGSGP--TILA 262 (302)
T ss_pred -HHHHHHHHHH-HHHHHHHHcCCHH-HHHHHcccccchhhHh----hhCCCHHHHHHHHHHCCCeEEEEEchhh--hheE
Confidence 1122223222 2356788888765 45554433 222121 236889999999877 999999999996 9999
Q ss_pred EEcChhhHHHHHHHHHhc--CCCCcEEEEeecCCC
Q 001402 1051 LAKDAESATELRRMLEKD--SNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1051 L~~~~~~ae~i~~~L~~~--~~f~v~v~~~~i~~~ 1083 (1084)
|+++.+.++.+.+.+++. .+...+++..+++.+
T Consensus 263 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
T TIGR00191 263 MADEEFAEQKEQDLLEVLHKQGIEGTVHVLDFDND 297 (302)
T ss_pred EecchhhHHHHHHHHHHHHhcCCCeEEEEcccCCC
Confidence 998766665555555442 234678888888764
No 31
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch. This enzyme is part of the mevalonate pathway, one of two alternative pathways for the biosynthesis of IPP. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the animal type and this ERG8 type. This model represents plant and fungal forms of the ERG8 type of phosphomevalonate kinase.
Probab=99.89 E-value=4.4e-21 Score=223.65 Aligned_cols=320 Identities=15% Similarity=0.151 Sum_probs=214.6
Q ss_pred EEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCC-C-----cEEEEeCCCCce-eeecC--CCC-
Q 001402 742 VELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKM-S-----GVLISDDAGNQL-HIEDL--TPI- 811 (1084)
Q Consensus 742 v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~-~-----~i~i~s~~~~~~-~~~~l--~~l- 811 (1084)
++||||+-++||....-| |-..+.+|++.+.+ +.|++.+. . .|.+.|..+... ....+ +..
T Consensus 2 ~sAPGKlliAGgYlVLep-----~y~aiVval~~r~~----a~v~~~~~~~~~~~~~i~v~SpQf~~~~~~y~~~~~~~~ 72 (454)
T TIGR01219 2 ASAPGKVLMAGGYLVLDK-----PYAGLVLGLNARFY----AIVKPINEEVGAWKWDVRVKSPQFSDREWLYKISLNHLT 72 (454)
T ss_pred cccCceEEEecceEEecC-----CCcEEEEEecceEE----EEEeecccccccCcceEEEeCCCCCCCceEEEEecCCcc
Confidence 579999999999655532 33457788888765 66765432 1 245565443211 00100 110
Q ss_pred -C----CCCCCCChHHHHHHHHHHhh-hhhhhccc---ccCEEEEEEecC-------------------CC--------C
Q 001402 812 -A----TPFDHNDPFRLVKSALLVTG-VIHEKLIE---SMGLQIRTWANV-------------------PR--------G 855 (1084)
Q Consensus 812 -~----~p~~~~~~~~lvkaal~~~g-~~~~~~~~---~~G~~I~i~S~I-------------------P~--------G 855 (1084)
. .....++...|+.+++.++. .+...... ..+++|+|.|+. +. +
T Consensus 73 ~~~~~~~~~~~~~~n~fv~~ai~~~~~y~~~~~~~~~~l~~~~itI~sd~d~ySq~~~~~~~~~~~~f~~~~~~~~e~~K 152 (454)
T TIGR01219 73 LQSVSASDSRNPFVNPFIQYAIAAVHLYFDKESLHKLLLQGLDITILGDNAYYSQPESLGTLAPFASITFNAAEKPEVAK 152 (454)
T ss_pred ceeecccccCCCCCChHHHHHHHHHHHHHHhccccccccCceEEEEEecCCcccccchhcccccccccccccccCCCccc
Confidence 0 00111234557887776542 22222122 457999997776 22 6
Q ss_pred CCCChHHHHHHHHHHHHHHHhCCCC-------------CHHHHHHHHHHHHHh-cCC-CCcccchhhhcccceEEEecCC
Q 001402 856 SGLGTSSILAAAVVKALLQITDGDQ-------------SNENVARLVLLLEQL-MGT-GGGWQDQIGGLYPGIKFTSSFP 920 (1084)
Q Consensus 856 sGLGSSSAlavA~l~Al~~l~g~~l-------------s~~eLa~la~~~E~~-~gt-~~G~~Dq~a~~~GG~~~~~~~~ 920 (1084)
.|||||||+++|+++||+.+++... +.+.|.++|+.+|.. .|. |+|. |.++++|||+.+.++.+
T Consensus 153 ~GLGSSAAvtVa~v~ALl~~~~~~~~~~~~~~~~~~~~~~~~i~kLA~~ah~~~qGk~GSG~-DvAaavyGgi~Y~rfd~ 231 (454)
T TIGR01219 153 TGLGSSAAMTTALVAALLHYLGVVDLSDPDKEGKFGCSDLDVIHNLAQTAHCLAQGKVGSGF-DVSAAVYGSQRYRRFSP 231 (454)
T ss_pred cCccHHHHHHHHHHHHHHHHhCCcccccccccccccccCHHHHHHHHHHHHHhhcCCCCCch-hhhhhhcCceEEEecCh
Confidence 9999999999999999999999877 789999999999985 464 5665 89999999987666533
Q ss_pred Cc-----------------------cceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 921 GI-----------------------PLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 921 g~-----------------------~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
.. +....++++.+|+ +.+++|.+|+.+++|.+++++|...+....+.....
T Consensus 232 ~~l~~~~~~~~~~~~~~~L~~~v~~~W~~~i~~l~lP~------~l~Llvgdtg~~ssT~~lV~~V~~~~~~~p~~s~~i 305 (454)
T TIGR01219 232 ELISFLQVAITGLPLNEVLGTIVKGKWDNKRTEFSLPP------LMNLFMGDPGGGSSTPSMVGKVKKWQMSDPEESREN 305 (454)
T ss_pred hhhhhhhccccccchhhhHHHHhccCCCCceeeccCCC------CCEEEEEcCCCCcCcHHHHHHHHHHHHHCHHHHHHH
Confidence 20 0001344555543 579999999999999999999854333332222233
Q ss_pred HHHHHHHHH---------------------HHHHHHhhc--------CHHHHHHHHHHHHHHHhhcCC----CCCcHHHH
Q 001402 978 IKRLTELAK---------------------NGRDALMNC--------DVDELGKIMLEAWRLHQELDP----HCSNEFVD 1024 (1084)
Q Consensus 978 l~~l~~~a~---------------------~~~~AL~~g--------D~~~lg~lm~~s~~~~~~l~~----~vs~p~ld 1024 (1084)
++.|...-. .+++.|..+ |+..+.+.|.++.+.++.|.. .+.+|++.
T Consensus 306 ~~~l~~aN~~~~~~l~~l~~~~~~~~~~y~~~~~~l~~~~~~~~~~~~~~~i~~~i~~~R~~Lr~~~~~sgv~IEp~~~t 385 (454)
T TIGR01219 306 WQNLSDANLELETKLNDLSKLAKDHWDVYLRVIKVLTSEKCVLHATEELLEAREAMLRIRRLMRQITEEASVDIEPESQT 385 (454)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccccchhhhhhhhhccccchhcccccHHHHHHHHHHHHHHHHHhhHhcCCcccCHHHH
Confidence 333332211 222335555 788899999999988888865 57899999
Q ss_pred HHHHHHcC--CCCeEEEcCCCccceeEEEEcChhh-HHHHHHHHHhcCCCCcEEEEeec
Q 001402 1025 RLFAFADP--YCCGYKLVGAGGGGFALLLAKDAES-ATELRRMLEKDSNFNSEVYNWNI 1080 (1084)
Q Consensus 1025 ~li~~a~~--ga~GaklSGAGgGG~viaL~~~~~~-ae~i~~~L~~~~~f~v~v~~~~i 1080 (1084)
+|++.+.+ |++|++.+|||||+|+++|+.++.+ .+++.+.|++. .|....++.
T Consensus 386 ~Lld~~~~~~Gvl~a~vpGAGGgDa~~~l~~~~~~~~~~~~~~W~~~---~V~pL~v~~ 441 (454)
T TIGR01219 386 QLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH---NVLALDVRE 441 (454)
T ss_pred HHHHHHhhcCCeeEeecCCCCccceEEEEecCChHHHHHHHHHHhhC---CEEEEeccc
Confidence 99999986 8899999999999999999987555 78899999764 454444444
No 32
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.87 E-value=1.6e-20 Score=212.20 Aligned_cols=272 Identities=18% Similarity=0.179 Sum_probs=185.7
Q ss_pred EEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
.++||+||||+ .+..+...+ |.=..+.+||+++.+ +++++.+...+.+..... ..+ |.+..
T Consensus 2 ~~~a~aKiNl~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~~~~i~~~~~~~--------~~~--~~~~~ 64 (300)
T PRK03188 2 TVRAPAKVNLH---LGVGPLRDDGYHELATVFQAVSLYDE----VTVTAADVLSVEVSGEGA--------DQV--PTDES 64 (300)
T ss_pred eEeecceEEEe---eccCCcCCCCccchHhhheehhhccE----EEEEECCCcEEEEecCCc--------cCC--CCCCc
Confidence 56899999998 555433222 344578999999986 667664332222221110 011 11111
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 898 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt 898 (1084)
+++..++..+. +......|++|++.|+||.++|||||||+++|++.|+++++|.++++++|++++..+|
T Consensus 65 ---nl~~~~~~~~~---~~~~~~~~~~I~i~s~IP~~~GLGSSSA~a~A~l~al~~~~g~~ls~~el~~~a~~ig----- 133 (300)
T PRK03188 65 ---NLAWRAAELLA---EHVGRAPDVHLHIDKGIPVAGGMAGGSADAAAALVACDALWGLGLSRDELLELAAELG----- 133 (300)
T ss_pred ---cHHHHHHHHHH---HHhCCCCCeEEEEEcCCcccCcchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence 23433333321 1122346899999999999999999999999999999999999999999999998875
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 978 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l 978 (1084)
.|+.++++||+.+.... +. .+.++..++ +..++++.++...+|+++.+.+.. ....+. .
T Consensus 134 ----~dv~~~~~GG~~~~~~~-g~----~~~~~~~~~------~~~~~lv~p~~~~sT~~~~~~l~~-~~~~~~-----~ 192 (300)
T PRK03188 134 ----SDVPFALLGGTALGTGR-GE----QLAPVLARG------TFHWVLAFADGGLSTPAVFRELDR-LREAGD-----P 192 (300)
T ss_pred ----CCcchhhcCCeEEEEec-CC----EEEECCCCC------CcEEEEEeCCCCCCHHHHHHhchh-hhcccc-----c
Confidence 38888999999887643 32 234544332 235666667766678877654322 111100 0
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhh
Q 001402 979 KRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES 1057 (1084)
Q Consensus 979 ~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ 1057 (1084)
.. ...+..+..++.++|++.++++|++..+. ..+ -..|+++++++.+++ |++|++|||+|+ ++++|+++++.
T Consensus 193 ~~-~~~~~~~~~al~~~d~~~l~~~~~n~le~-~~~---~~~p~l~~l~~~~~~~Galga~lSGsG~--tv~~l~~~~~~ 265 (300)
T PRK03188 193 PR-LGEPDPLLAALRAGDPAQLAPLLGNDLQA-AAL---SLRPSLRRTLRAGEEAGALAGIVSGSGP--TCAFLCADADS 265 (300)
T ss_pred cc-cccHHHHHHHHHcCCHHHHHHHhhCcCHH-HHH---HhCchHHHHHHHHHHCCCCEEEEEcccc--ceEEEeCCHHH
Confidence 01 11346788999999999999998654322 112 137999999999987 999999999999 68899988778
Q ss_pred HHHHHHHHHhc
Q 001402 1058 ATELRRMLEKD 1068 (1084)
Q Consensus 1058 ae~i~~~L~~~ 1068 (1084)
++++.+.|++.
T Consensus 266 ~~~~~~~l~~~ 276 (300)
T PRK03188 266 AVDVAAALSGA 276 (300)
T ss_pred HHHHHHHHHhc
Confidence 88999999875
No 33
>PRK01123 shikimate kinase; Provisional
Probab=99.86 E-value=6.6e-20 Score=205.20 Aligned_cols=271 Identities=19% Similarity=0.178 Sum_probs=182.0
Q ss_pred eEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCChHHHHH
Q 001402 746 VRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHNDPFRLVK 825 (1084)
Q Consensus 746 ~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~~~~lvk 825 (1084)
+|..--|+.||+|.|+-.|||.+ +|++|.+ +++++.++. +.+... ...+ +.. + .+++.
T Consensus 3 ~~~~~~gg~~~~~~~~~~~g~~~---~i~l~~~----v~v~~~~~~-~~~~~~---------~~~~--~~~--~-~~~v~ 60 (282)
T PRK01123 3 GRATALGAGTIINAIATGKGSAF---GIDLKTT----ATVELSDDG-GGIEGE---------ISGN--PDA--D-TRLIE 60 (282)
T ss_pred ceEEecchhhhhhhhhcCcccEE---EeccEEE----EEEEECCCC-ceeeec---------ccCC--CCC--C-chHHH
Confidence 57788899999999998888774 8999976 777665443 222211 0111 111 1 24555
Q ss_pred HHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC--CCCccc
Q 001402 826 SALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TGGGWQ 903 (1084)
Q Consensus 826 aal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~g--t~~G~~ 903 (1084)
.++..+. +......|++|++.++||.++|||||||+++|++.|++++++.++++++|+++|..+|...+ ..+|.|
T Consensus 61 ~~~~~~~---~~~~~~~~~~i~i~s~IP~~~GLGSSaA~~va~~~a~~~~~~~~l~~~el~~la~~~e~~~~~~~~g~~~ 137 (282)
T PRK01123 61 RCVELVL---ERFGIDYGATVRTKSEIPLASGLKSSSAAANATVLATLDALGEDLDDLDILRLGVKASRDAGVTVTGAFD 137 (282)
T ss_pred HHHHHHH---HHhCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhhccccccccCchh
Confidence 5554432 11222459999999999999999999999999999999999999999999999999998533 358889
Q ss_pred chhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHH
Q 001402 904 DQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTE 983 (1084)
Q Consensus 904 Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~ 983 (1084)
|++++++||+++...... ..+.+++. ++.++++.|+.+..|.+.-+.. +..+..
T Consensus 138 d~~~~~~GG~~~~~~~~~----~~~~~~~~--------~~~~vv~~p~~~~~T~~~r~~~--------------l~~~~~ 191 (282)
T PRK01123 138 DACASYFGGVTVTDNREM----KLLKRDEV--------ELDVLVLIPPEGAFSASADVER--------------MKLIAP 191 (282)
T ss_pred HHHHHHhCCEEEEcCCCc----eEEEEecC--------CcEEEEEECCCCcchhhhhhhh--------------chhcCc
Confidence 999999999987653221 11223321 2578999999887776532211 111222
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHH-hhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhhHHHH
Q 001402 984 LAKNGRDALMNCDVDELGKIMLEAWRLH-QELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATEL 1061 (1084)
Q Consensus 984 ~a~~~~~AL~~gD~~~lg~lm~~s~~~~-~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i 1061 (1084)
.+..+.++++++|+. .+|+.++... ..+. .++ + ++..+.+ |++|+++||+|+ |+++|++. +..+++
T Consensus 192 ~~d~~~~~~~~~~l~---~~~~~~~l~~~~~l~--~~~---~-~i~~a~~~Ga~ga~lSGaGp--tv~al~~~-~~~~~v 259 (282)
T PRK01123 192 YVDMAFELALDGEYF---KAMTLNGLLYSSALG--FPT---E-PALEALEAGAVGVGLSGTGP--SYVAIVDE-EDPEEV 259 (282)
T ss_pred HHHHHHHHHhhccHH---HHHHhCCchhhhhhC--CCh---H-HHHHHHHCCCeEEEEecCCC--eEEEEeCC-CCHHHH
Confidence 233455556677764 5555542221 2342 232 2 2333444 899999999865 99999985 567889
Q ss_pred HHHHHhcCCCCcEEEEeecCCC
Q 001402 1062 RRMLEKDSNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1062 ~~~L~~~~~f~v~v~~~~i~~~ 1083 (1084)
.++|++. .+++.++++.+
T Consensus 260 ~~~l~~~----~~~~~~~~~~~ 277 (282)
T PRK01123 260 KEAWEKY----GKVIVTKINNE 277 (282)
T ss_pred HHHHHhC----CEEEEeeecCC
Confidence 9999874 66777777653
No 34
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.84 E-value=5.2e-19 Score=197.73 Aligned_cols=262 Identities=15% Similarity=0.159 Sum_probs=177.3
Q ss_pred EEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
+.++||++|||+ .|..+...+ |.=..+-..|+++.. +++++.+...+.+.... ..+ |.++
T Consensus 4 ~~~~apaKiNl~---L~i~~~r~dgyH~l~s~~~~i~l~d~----v~v~~~~~~~~~i~~~~---------~~~--p~~~ 65 (280)
T PRK14614 4 LTLKAPAKVNYR---LDVLRRRPDGYHDLRMIMQRVDLCDE----IEIALSDGPGIRVTCGR---------EGV--PDGP 65 (280)
T ss_pred eEEeecceEEee---eccCCCCCCCcChhheEeEECCCCeE----EEEEECCCCCEEEEeCC---------CCC--CCCC
Confidence 567999999988 666544332 344578889999986 66766543334443110 012 2221
Q ss_pred CChHHHH-HHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 001402 818 NDPFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 896 (1084)
Q Consensus 818 ~~~~~lv-kaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~ 896 (1084)
+ +++ +++...+. ......|++|++.++||.++|||||||+++|++.+++++++.+++++++.+++..+|.
T Consensus 66 ~---nl~~~a~~~~~~----~~~~~~~~~i~i~~~IP~~~GLGsssa~~~a~~~al~~~~~~~l~~~~l~~~a~~~G~-- 136 (280)
T PRK14614 66 G---NIAWRAADALLD----LSGREVGIDISITKNIPVAAGLGGGSSDAATVLMGVNELLGLGLSDERLMEIGVKLGA-- 136 (280)
T ss_pred C---cHHHHHHHHHHH----HhCCCCceEEEEEecCCCcCccHHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence 2 244 33332222 1222458999999999999999999999999999999999999999999999976542
Q ss_pred CCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHH
Q 001402 897 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 976 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~ 976 (1084)
|.+++++||..+.... |. .++++..++ +..+++++|+...+|+++++.+.............
T Consensus 137 -------Dv~~~l~gg~~~~~g~-ge----~~~~l~~~~------~~~ivl~~p~~~~sT~~~~~~~~~~~~~~~~~~~~ 198 (280)
T PRK14614 137 -------DVPFFIFKKTALAEGI-GD----KLTAVEGVP------PLWVVLVNPGLHVSTAWVYQNLRLTSRKDLAIIPR 198 (280)
T ss_pred -------CcceeeeCCcEEEEEc-Cc----eeEECCCCC------CcEEEEECCCCCCCHHHHHhcccccccCcchhhhh
Confidence 8888899998876543 32 245554332 45799999999999999987642211000000011
Q ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcCh
Q 001402 977 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 977 ~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~ 1055 (1084)
.+..+. .+.++..+|++.+. + -..|.++++++.+++ |++|++|||||+ |+++++++.
T Consensus 199 ~~~~~~-----~~~~~~~ndle~~~------------~---~~~p~l~~i~~~~~~~Galga~lSGSG~--tv~~l~~~~ 256 (280)
T PRK14614 199 FFGSVA-----EVCALLSNDLESVT------------I---GRFPVIGEIKEELLAAGARGSLMSGSGS--TVFGLFDDE 256 (280)
T ss_pred hhhhHH-----HHhhhcccCcHHHH------------H---hcChHHHHHHHHHHhCCCCEEEEecccc--ceEEEeCCH
Confidence 111111 12345567776553 0 125999999999988 899999999985 999999986
Q ss_pred hhHHHHHHHHHhc
Q 001402 1056 ESATELRRMLEKD 1068 (1084)
Q Consensus 1056 ~~ae~i~~~L~~~ 1068 (1084)
+.++++.+.+++.
T Consensus 257 ~~~~~~~~~l~~~ 269 (280)
T PRK14614 257 AAARAAAEELSRE 269 (280)
T ss_pred HHHHHHHHHhhhc
Confidence 6688899988874
No 35
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=1.2e-18 Score=196.05 Aligned_cols=277 Identities=14% Similarity=0.061 Sum_probs=179.9
Q ss_pred CCeEEEEeceEEeeeccccccCCcccC--CCceEEEEeee-cCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCC
Q 001402 737 PRTVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAIS-LESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT 813 (1084)
Q Consensus 737 ~~~v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~-l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~ 813 (1084)
.+.+.+.||+||||. .|..+...+ |.=.++.++|+ .+.. +++++.++..+.+..... ++
T Consensus 4 ~~~~~~~apaKINL~---L~v~~kr~DGyH~l~sl~~~i~~~~D~----l~i~~~~~~~i~~~~~~~---------~~-- 65 (296)
T PRK14615 4 NDAVTLRSGCKVNLD---LRITGVRPDGYHEIDSLFLPLPEPHDE----LHVRVTDAPGITVTCTIP---------DL-- 65 (296)
T ss_pred CCeEEEEecceEEec---cccCCcCCCCCcceEEEEEECCCCCcE----EEEEECCCCCEEEEECCC---------CC--
Confidence 345788999999998 444433221 45568999998 4765 677776554455543211 11
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 814 PFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 814 p~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
+. .+| ++..++..+. +......|++|++.++||.++||||||+.++|++.+++++++.+++.+++++++..+|
T Consensus 66 ~~-~~N---lv~~a~~~~~---~~~~~~~~~~i~i~k~IP~~~GLGsgsa~aaa~l~al~~l~~~~l~~~~l~~~a~~~g 138 (296)
T PRK14615 66 DP-ERN---TVTRAYTAFA---AATGFRPPLEVHLRKGIPHGAGLGGGSADAAALLRHLNSIAPHPLSPEALAKLAAGVG 138 (296)
T ss_pred CC-Ccc---HHHHHHHHHH---HHhCCCCCeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhC
Confidence 11 112 3322333221 1122236899999999999999999999999999999999999999999999998877
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChH
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
. |+.++++||..+.... |+ .++|++.+. .+..++|++|+..-+|+++++............
T Consensus 139 a---------DvPffl~gg~a~~~G~-Ge----~~~~l~~~~-----~~~~~vl~~P~~~vsT~~a~~~~~~~~~~~~~~ 199 (296)
T PRK14615 139 A---------DVPFFLHNVPCRATGI-GE----ILTPVALGL-----SGWTLVLVCPEVQVSTPWAYAAWDAANAKQIAA 199 (296)
T ss_pred C---------CCeeeccCCCEEEEee-Ee----EEEECCCCC-----CCcEEEEECCCCCcChHHHHHHhhhhccccccc
Confidence 4 7777777888776533 32 346665321 145789999999999999876432111000000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHH--HHHHHH-HHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeE
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKI--MLEAWR-LHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFAL 1049 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~l--m~~s~~-~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~vi 1049 (1084)
. ..... ....+..+...+|...+++. +.+..+ ... -..|+++++++.+.+ |++|++|||||+ |+|
T Consensus 200 ~---~~~~~-~~~~~l~~~~~~~~~~~~~~~~l~ndle~~~~-----~l~P~l~~~~~~~~~~GAlga~mSGSGp--tvf 268 (296)
T PRK14615 200 S---SRKQN-RLRGCLTTEGVADRNPLSRGLWLHNSFEPVVF-----AAHPELRRLKETLLRHGAAAALMSGSGS--SVF 268 (296)
T ss_pred c---ccccc-chHHHHHhhhccchhhhhhhhhccccchhHhH-----HhChHHHHHHHHHHhcCCCEEEEeccCc--ceE
Confidence 0 00000 00112233344454433322 222211 111 146999999999987 999999999997 999
Q ss_pred EEEcChhhHHHHHHHHHhc
Q 001402 1050 LLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1050 aL~~~~~~ae~i~~~L~~~ 1068 (1084)
+|+++.+.++++.+.+++.
T Consensus 269 aL~~~~~~a~~i~~~l~~~ 287 (296)
T PRK14615 269 GLFRRRAQAEAAFEMLKGH 287 (296)
T ss_pred EEeCCHHHHHHHHHHHhhh
Confidence 9999888889999999875
No 36
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=1.3e-18 Score=195.39 Aligned_cols=266 Identities=17% Similarity=0.115 Sum_probs=177.2
Q ss_pred eEEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
++.++||+||||. .+..+...+ |.=..+.++|+++.. +++++.+ .+.+..... ++ |.+
T Consensus 3 ~~~~~a~aKiNL~---L~i~~~r~dgyH~l~si~~~i~l~d~----v~v~~~~--~~~i~~~~~---------~~--p~~ 62 (287)
T PRK14616 3 HISVKAFAKINLG---LLITGKRPDGYHTLETIFAPINWYDT----LTFSPSD--TISMSCTNL---------DL--PVD 62 (287)
T ss_pred ceEEeeceeEEee---eecCCCCCCCccceeEEEEEcCCCCE----EEEEECC--CEEEEeCCC---------CC--CCC
Confidence 4678999999998 443222111 344678889999886 6666533 243332110 11 211
Q ss_pred CCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 001402 817 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 896 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~ 896 (1084)
. -+++..++..+. +......|++|+|.++||.++|||||||.++|++.++++++|.+++.++++++|..+|.
T Consensus 63 ~---~nl~~~a~~~~~---~~~~~~~~~~I~i~k~IP~~~GLGssSA~aaA~l~al~~l~g~~ls~~el~~~a~~ig~-- 134 (287)
T PRK14616 63 D---SNLCIRAAKALQ---EYAGVSKGVSITLDKRVPFGAGLGGGSSDAATVLRVLNELWEINAPSADLHRLAVKLGA-- 134 (287)
T ss_pred c---cHHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC--
Confidence 1 234433333221 12223568999999999999999999999999999999999999999999999999874
Q ss_pred CCCCcccchhhhc-ccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHH
Q 001402 897 GTGGGWQDQIGGL-YPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 975 (1084)
Q Consensus 897 gt~~G~~Dq~a~~-~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~ 975 (1084)
|..+++ +||+.+.... |. .++++..+. ..++++++|+...+|.++.+.+.+.+..+
T Consensus 135 -------Dvp~~l~~gg~~~~~g~-g~----~~~~~~~~~------~~~~vvv~P~~~vsT~~a~~~l~~~~~~~----- 191 (287)
T PRK14616 135 -------DVPYFLEMKGLAYATGI-GD----ELEDLQLTL------PFHIVTVFPEEHISTVWAYKNFYRRFERE----- 191 (287)
T ss_pred -------CcceEeccCCcEEEEEc-Cc----eeEECCcCC------CcEEEEECCCCCcCHHHHHHHhhhhcccC-----
Confidence 554444 5888766533 32 234443322 35789999999889988775432221111
Q ss_pred HHHHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc
Q 001402 976 SSIKRLTELAKNGRDALM-NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 1053 (1084)
Q Consensus 976 ~~l~~l~~~a~~~~~AL~-~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~ 1053 (1084)
..+ ...+..++. .++++.++.+.++.......+ .|+++++.+.+.+ |++|+.|||||+ ++++|++
T Consensus 192 --~~~----~~~l~~~l~~~~~~~l~~~~~nD~e~~~~~l-----~p~l~~v~~~~~~~Galg~~lSGSGp--tv~al~~ 258 (287)
T PRK14616 192 --RPD----LKTLVRRLCLDGDTSVLPAFENDFESAVFDH-----YPAVRKVKDDLLEAGSFFASLSGSGS--AVFGLFE 258 (287)
T ss_pred --Cch----HHHHHHHHhcCCHHHHHHHhcCccHHHHHHh-----ChHHHHHHHHHHhCCCCeEEEecccc--cceEEeC
Confidence 111 122344444 356666665555443333343 4999999998887 999999999999 9999999
Q ss_pred ChhhHHHHHHHHHhc
Q 001402 1054 DAESATELRRMLEKD 1068 (1084)
Q Consensus 1054 ~~~~ae~i~~~L~~~ 1068 (1084)
+.+.++++.+.+++.
T Consensus 259 ~~~~a~~i~~~l~~~ 273 (287)
T PRK14616 259 NEADAEAAAEMMRAR 273 (287)
T ss_pred CHHHHHHHHHHhHHh
Confidence 877888999998875
No 37
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.83 E-value=2.8e-18 Score=192.70 Aligned_cols=266 Identities=17% Similarity=0.101 Sum_probs=175.0
Q ss_pred eEEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
.+.+.||+||||. .+..+...+ |.=..+-..|+++.. +++++.+...+.+...... .+ |.+
T Consensus 6 ~~~~~a~aKiNL~---L~i~~kr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~i~~~~~~~~--------~i--p~~ 68 (290)
T PRK14608 6 SLTEFAPAKINLA---LHVTGRRADGYHLLESLVAFADVGDR----LTLEPAEALSLTVSGPFAA--------GL--GDG 68 (290)
T ss_pred eEEEEeceeEEee---eccCCCCCCCCcceeEEEEECCCCcE----EEEEECCCCcEEEeCCCcc--------CC--CCC
Confidence 3668899999998 333322211 344678889999986 6666654444544422110 11 221
Q ss_pred CCChHHHHHHHHHHhhhhhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 001402 817 HNDPFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 895 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~ 895 (1084)
.-|++..|+..+. +... ...|++|++.++||.|+|||||||.++|++.+++++++.++++++++++|..+|.
T Consensus 69 ---~~Nlv~ka~~~~~---~~~g~~~~~~~i~i~k~IP~~~GLGsssa~aaa~l~~l~~l~~~~ls~~el~~la~~ig~- 141 (290)
T PRK14608 69 ---DDNLVLRAARALR---ARVGPGLPPGAFHLEKNLPVAAGIGGGSADAAAALRLLARLWGLALDDERLAALALSLGA- 141 (290)
T ss_pred ---CCcHHHHHHHHHH---HHhCCCCCceEEEEEeCCcCcCCchHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence 1235544444332 1221 3468999999999999999999999999999999999999999999999998752
Q ss_pred cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHH
Q 001402 896 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLI 975 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~ 975 (1084)
|+.++++||..+.... |. .+.+++..+ +..+++++|+...+|.++.+.+. ... .. ...
T Consensus 142 --------dv~~~l~gg~~~~~g~-g~----~~~~l~~~~------~~~~vv~~p~~~~sT~~~~~~l~-~~~-~~-~~~ 199 (290)
T PRK14608 142 --------DVPVCLDSRPLIMRGI-GE----ELTPLPGLP------SLPAVLVNPGVPVATPDVFRALG-LRD-GP-PLP 199 (290)
T ss_pred --------CcchhhcCCeEEEEec-CC----EeEECCCCC------CcEEEEECCCCCcChHHHHHhhc-ccc-CC-cch
Confidence 8889999999887643 32 345654222 45799999999999998876432 111 00 100
Q ss_pred HHHHHHHHHHHHHHHHHh--hcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC--CCCeEEEcCCCccceeEEE
Q 001402 976 SSIKRLTELAKNGRDALM--NCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLL 1051 (1084)
Q Consensus 976 ~~l~~l~~~a~~~~~AL~--~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~--ga~GaklSGAGgGG~viaL 1051 (1084)
.....+.. ...+..++. .+|++... .. ..|+++++++.+.+ |++|++|||||+ ++|+|
T Consensus 200 ~~~~~~~~-~~~l~~~~~~~~ndle~~~----------~~-----l~p~l~~i~~~~~~~~Ga~~~~lSGSGs--tvf~l 261 (290)
T PRK14608 200 GAPDPLAS-ADALLAALAATRNDLEPPA----------LA-----LAPVIGEVLAALRAQPGALLARMSGSGA--TCFAL 261 (290)
T ss_pred hhhhhhhh-hhhHHHHHHhccCccHHHH----------HH-----cCcHHHHHHHHHHhcCCCCeeEEecccc--CeEEE
Confidence 11111111 111222232 23332211 11 35889999988864 899999999998 99999
Q ss_pred EcChhhHHHHHHHHHhc
Q 001402 1052 AKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1052 ~~~~~~ae~i~~~L~~~ 1068 (1084)
+++.+.++++.+.+++.
T Consensus 262 ~~~~~~a~~~~~~l~~~ 278 (290)
T PRK14608 262 FADEAAAEAAAAAIAAA 278 (290)
T ss_pred eCCHHHHHHHHHHhHhh
Confidence 99877788999998764
No 38
>TIGR01920 Shik_kin_archae shikimate kinase. This model represents the shikimate kinase (SK) gene found in archaea which is only distantly related to homoserine kinase (thrB) and not atr all to the bacterial SK enzyme. The SK from M. janaschii has been overexpressed in E. coli and characterized. SK catalyzes the fifth step of the biosynthesis of chorismate from D-erythrose-4-phosphate and phosphoenolpyruvate.
Probab=99.83 E-value=1.1e-18 Score=192.82 Aligned_cols=205 Identities=20% Similarity=0.182 Sum_probs=146.8
Q ss_pred HHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC--CC
Q 001402 822 RLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG--TG 899 (1084)
Q Consensus 822 ~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~g--t~ 899 (1084)
+++..++..+. +.+....|++|++.++||.++|||||||+++|++.|++++++.+++++++++++.++|...+ ..
T Consensus 46 n~i~~~~~~~~---~~~~~~~g~~i~i~s~iP~~~GLGSSaA~~~a~~~al~~~~~~~l~~~~l~~la~~~e~~~~~~~~ 122 (261)
T TIGR01920 46 RLIERILTAIR---SKFGIVDGLEVEVESEIPAGSGLKSSSALVNALVEAVLKAKGVEIDDIDILRLGARLSKDAGLSVT 122 (261)
T ss_pred HHHHHHHHHHH---HhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhCCCCC
Confidence 45555555442 12223478999999999999999999999999999999999999999999999999998543 56
Q ss_pred CcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHH
Q 001402 900 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 979 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~ 979 (1084)
+|.||++++++||+.+.+..+. . .+.+++.+ +..++++.++...+|..+-.. .+.
T Consensus 123 ~~~~D~~~~~~gG~~~~~~~~~---~-~~~~~~~~-------~~~~vv~~p~~~~tt~~~~~~--------------~l~ 177 (261)
T TIGR01920 123 GAFDDAAASYLGGIVITDNRRM---K-ILKRDKLE-------GCTAAVLVPKEGERRENVDLN--------------RFR 177 (261)
T ss_pred CcHHHHHHHHhCCEEEEeCCCc---e-EEEecCCC-------CceEEEEECCCCcccccccHH--------------Hhh
Confidence 8999999999999988764332 1 12223322 236788888775544322111 122
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-hhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhh
Q 001402 980 RLTELAKNGRDALMNCDVDELGKIMLEAWRLH-QELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAES 1057 (1084)
Q Consensus 980 ~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~-~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ 1057 (1084)
.+...+.++.++++.+|+. ++|+.++.++ ..+ +++.+ +++.+++ |++|++|||+|+ |+++|+++.
T Consensus 178 ~~~~~~~~~~~~~~~~~l~---~am~~n~~l~~~~l--g~~~~----~i~~a~~~Galga~lSGaG~--sv~aL~~~~-- 244 (261)
T TIGR01920 178 RISPVVEEAFNLALRGEYL---KAMVLNGVAYATAL--GYPLE----PASKALEAGAAAAGLSGKGP--SYFALTEDP-- 244 (261)
T ss_pred hcchHHHHHHHHHhhCCHH---HHHhhChHHhHHhh--CCChH----HHHHHHHcCCcEEeecCCCC--eEEEEeCCH--
Confidence 3334456677888888876 7788777655 333 34444 4455655 999999999855 999999863
Q ss_pred HHHHHHHHHhc
Q 001402 1058 ATELRRMLEKD 1068 (1084)
Q Consensus 1058 ae~i~~~L~~~ 1068 (1084)
+++.+.|++.
T Consensus 245 -~~v~~~~~~~ 254 (261)
T TIGR01920 245 -EEAAEALMEF 254 (261)
T ss_pred -HHHHHHHHhC
Confidence 6788888774
No 39
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.82 E-value=1.6e-18 Score=193.30 Aligned_cols=269 Identities=16% Similarity=0.139 Sum_probs=180.1
Q ss_pred EEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
..+||++|||+ .+..+...+ |.=..+..+|+++.+ +++++.+ .+.+..+.. .+ |.
T Consensus 3 ~~~a~aKiNL~---L~i~~kr~dgyH~l~s~~~ai~l~d~----v~i~~~~--~~~i~~~~~---------~~--~~--- 59 (275)
T PRK14611 3 VLLSPAKVNLG---LWILGKRPDGYHEIFTIYHTIDLYDR----IYIKEHH--TLEVKTSSP---------QI--KE--- 59 (275)
T ss_pred eeeecceEEee---eccCcCCCCCcchhhheeEeccCCcE----EEEEECC--cEEEEeCCC---------CC--CC---
Confidence 45899999998 333222111 344568889999986 6676543 233332210 11 11
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 898 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt 898 (1084)
+.+++..++..+. +......|++|++.++||.++|||||||.++|++.|++++++.+++.++|+++|..+|.
T Consensus 60 -~~n~v~~a~~~~~---~~~g~~~~~~i~i~k~IP~~~GLGSSsA~aaA~l~al~~~~~~~l~~~~l~~la~~i~~---- 131 (275)
T PRK14611 60 -EENIVYKALRLFE---RYTGIDINYSIFIEKNIPVGAGLGGGSSNAAVVLKYLNELLGNPLSEEELFELASSISA---- 131 (275)
T ss_pred -cccHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC----
Confidence 2345666655542 12223468999999999999999999999999999999999999999999999998874
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 978 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l 978 (1084)
|...+++||+.+.... |. .+.+++.+. ...+++++|+...+|+++.+.+...+..+ .
T Consensus 132 -----D~~~~~~Gg~~~~~~~-g~----~~~~~~~~~------~~~~vv~~p~~~~sT~~~~~~l~~~~~~~-------~ 188 (275)
T PRK14611 132 -----DAPFFLKGGFALGRGI-GD----KLEFLEKPI------SREITLVYPNIKSSTGRVYSKVTKQILTN-------K 188 (275)
T ss_pred -----CCCeeecCCeEEEecc-Cc----eeEECCcCC------CcEEEEEeCCCCCChHHHHHhcchhhccC-------c
Confidence 7777889999887643 32 234554322 34689999999999999886542221111 1
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHH-HHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcChhh
Q 001402 979 KRLTELAKNGRDALMNCDVDELGKIMLEA-WRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES 1057 (1084)
Q Consensus 979 ~~l~~~a~~~~~AL~~gD~~~lg~lm~~s-~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~~~~ 1057 (1084)
. ....+..++.++|++.++..+.+. ++.... ..|++.++.+....++.++.|||||+ ++++++++.+
T Consensus 189 ~----~~~~l~~~l~~~~~~~~~~~~~n~l~~~~~~-----~~P~l~~~~~~l~~~~~~~~~SGSG~--tvf~l~~~~~- 256 (275)
T PRK14611 189 E----DLNIIISLLREGEEKKIEEVIENTLGEIALE-----LYPEIKEVYRFLEYLGYKPFVSGSGS--SVYVFGKPSE- 256 (275)
T ss_pred c----hHHHHHHHHHcCCHHHHHHhcCCcccHHHHH-----HCHHHHHHHHHHHhCCCCEEEeCccc--cceeEeCCHH-
Confidence 1 123467788999998887765433 332322 34888888888776556999999999 9999997643
Q ss_pred HHHHHHHHHhcCCCCcEEEEeec
Q 001402 1058 ATELRRMLEKDSNFNSEVYNWNI 1080 (1084)
Q Consensus 1058 ae~i~~~L~~~~~f~v~v~~~~i 1080 (1084)
++.+.+... ++ ++|.++.
T Consensus 257 --~~~~~~~~~-~~--~~~~~~~ 274 (275)
T PRK14611 257 --EVKKAAAVR-GW--KLIETKL 274 (275)
T ss_pred --HHHHHHhhC-Ce--EEEEEee
Confidence 334444432 22 2666653
No 40
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.81 E-value=2.9e-18 Score=191.52 Aligned_cols=259 Identities=18% Similarity=0.120 Sum_probs=174.7
Q ss_pred EEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
+.++||++|||. .|..+...+ |.=..+.+||+++.. +++++.++ .+.+..... .+ |.+.
T Consensus 3 ~~~~a~aKiNl~---L~i~~~~~dgyH~l~sl~~al~l~d~----v~i~~~~~-~~~i~~~~~---------~~--p~~~ 63 (276)
T PRK14612 3 MERLAPAKVNLG---LSVLGRREDGYHELHTLMVPLDVGDR----LEVEPIAS-GLELRVLGA---------DL--PTDE 63 (276)
T ss_pred eEEeeCcEEeec---cccCCCCCCCCceeEEEEEECCCCCE----EEEEECCC-cEEEEcCCC---------CC--CCCC
Confidence 457899999998 777655432 455689999999986 67766543 344432110 11 2121
Q ss_pred CChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC
Q 001402 818 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 897 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~g 897 (1084)
++- +.|++...+. ......|++|++.++||.|+|||||||.++|++.+++++++.+++ +.+++..+|
T Consensus 64 ~Nl--i~ka~~~~~~----~~g~~~~~~I~i~k~IP~~~GLGssSa~aaa~l~al~~l~~~~l~---l~~ia~~~g---- 130 (276)
T PRK14612 64 RNL--VYRAARAYLD----AAGQPGGVRITLEKRLPLAAGLGGGSSDAAATLLALAQLYPAPVD---LPALALTLG---- 130 (276)
T ss_pred ccc--HHHHHHHHHH----HhCCCCCeEEEEEecCCCcCCCchHHHHHHHHHHHHHHHhCCChH---HHHHHHHhC----
Confidence 221 3444433322 222245899999999999999999999999999999999998775 445554443
Q ss_pred CCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 898 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 898 t~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
.|++++++||+.+.... |. .+.+++.+ .+.++|++|+...+|+++.+.+.... .+..
T Consensus 131 -----~dv~~~~~GG~~~~~g~-g~----~~~~l~~~-------~~~~vv~~P~~~~sT~~a~~~l~~~~--~~~~---- 187 (276)
T PRK14612 131 -----ADVPFFLLGGAAEARGV-GE----RLTPLELP-------PVPLVLVNPGVAVSARDAYRWLEPED--FGPE---- 187 (276)
T ss_pred -----CCcCeeeeCCeEEEEec-Cc----cceEcCCC-------CcEEEEECCCCCCCHHHHHHhhcccc--CCCc----
Confidence 28999999999888643 32 24566432 35799999999999998876431110 0000
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
..+..+..+|.++|...+...| +.... ...|+++++++.+.+ |++|++|||||+ ++++|+++.+
T Consensus 188 -----~~~~~l~~~l~~~d~~~~~n~l---~~~~~-----~~~p~l~~i~~~l~~~Ga~~~~lSGsGp--tvfal~~~~~ 252 (276)
T PRK14612 188 -----LDVEAILAALARGEEPPYWNSL---EGPVF-----ARHPELQEVLAALRAAGLRGVLMSGSGS--TCFGLAEDAA 252 (276)
T ss_pred -----ccHHHHHHHHHhcccccccCCc---HHHHH-----HhChHHHHHHHHHHhCCCCEEEEcCcch--hhEEEeCCHH
Confidence 0134456677777643322222 11111 346999999999987 999999999998 9999999877
Q ss_pred hHHHHHHHHHhc
Q 001402 1057 SATELRRMLEKD 1068 (1084)
Q Consensus 1057 ~ae~i~~~L~~~ 1068 (1084)
.++++.+.+++.
T Consensus 253 ~a~~~~~~l~~~ 264 (276)
T PRK14612 253 QAQRAAAALRAR 264 (276)
T ss_pred HHHHHHHHhHhh
Confidence 788899999875
No 41
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.80 E-value=1.6e-17 Score=187.02 Aligned_cols=279 Identities=15% Similarity=0.063 Sum_probs=175.9
Q ss_pred EeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCc-eeeecCCCCCCCCCCCC
Q 001402 743 ELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQ-LHIEDLTPIATPFDHND 819 (1084)
Q Consensus 743 ~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~-~~~~~l~~l~~p~~~~~ 819 (1084)
.||+||||. .|..+...+ |.=..+...|+++.+ +++++.+...+.+....... ....-..++....+..
T Consensus 2 ~apAKINL~---L~I~gkr~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 73 (297)
T PRK14613 2 ISPAKINLG---LEIPFKREDGFHEIRSVFLKISWGDD----IEIEPAPNGVFELFSTNEIILEKRKLYDQVSERGDIK- 73 (297)
T ss_pred CCCceEeee---ecCCCcCCCCcceeeeEEEEeccCCE----EEEEECCCCcEEEEecccccccccccccccCCCCCcc-
Confidence 589999998 444332211 445678899999987 66766544445554321110 0000000111000111
Q ss_pred hHHHH-HHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Q 001402 820 PFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 898 (1084)
Q Consensus 820 ~~~lv-kaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt 898 (1084)
-|++ |++..... ......|++|++.++||.++|||||||.+++++.+++..+++ ...+++.++|..+|.
T Consensus 74 -~Nlv~ka~~~~~~----~~~~~~~v~I~i~K~IP~~aGLGggSs~Aaa~l~~l~~~~~l-~~~e~L~~lA~~lGa---- 143 (297)
T PRK14613 74 -QNILYKTFIKARS----LFPELPGVKIHLTKRISPAGGLGGGSTNAASLLNFLFSWRNF-FTSDEMQVFAKEIGS---- 143 (297)
T ss_pred -cchHHHHHHHHHH----HhCCCCCeEEEEEeCCCccCCccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHhCC----
Confidence 2234 44433322 222346899999999999999999999999999888876554 234677779988852
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 978 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l 978 (1084)
|+.+++.|+..+... .|. .+.+++.++ ..+++++|+...+|.++.+.+.+.+......
T Consensus 144 -----DvP~~l~G~~a~~~g-~Ge----~~~~l~~~~-------~~~vlv~P~~~vsT~~a~~~l~~~~~~~~~~----- 201 (297)
T PRK14613 144 -----DVPFFLGEGHAFVTG-KGE----IMEEIEVHK-------GQGILALTPQVMNTGEMYALLKKPLQESASQ----- 201 (297)
T ss_pred -----ccchhhcCCeEEEec-CCc----EEEEcCCCC-------CeEEEEECCCCcChHHHHHhcchhhcccccc-----
Confidence 777677776544443 332 345665432 2357888998888888876432221111010
Q ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 979 KRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 979 ~~l~~~a~~~~~AL~~gD~~~lg~lm-~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
......+..+..+|.++|++.+...+ ++.......+ .|+++++++.+.+ |+++++|||||+ |+|+++++.+
T Consensus 202 ~~~~~~~~~~~~al~~~~~~~l~~~l~ndle~~~~~l-----~P~~~~i~~~~~~~Ga~~~~mSGSGp--tvf~l~~~~~ 274 (297)
T PRK14613 202 KNGNTLSEDLISSLKVGDWVSLQGRLENDFEPVAFQL-----HPELGVLKDKFLEFGSSYCSLTGSGS--SMYGLVQGLE 274 (297)
T ss_pred ccccccHHHHHHHHHcCCHHHHHHHhcccchHHHHHh-----CcHHHHHHHHHHHcCCCEEEEEcccc--ceEEEeCCHH
Confidence 01111234577889999999886654 5543344444 4899999998877 899999999987 9999999878
Q ss_pred hHHHHHHHHHhc
Q 001402 1057 SATELRRMLEKD 1068 (1084)
Q Consensus 1057 ~ae~i~~~L~~~ 1068 (1084)
.++++.+.+++.
T Consensus 275 ~a~~~~~~l~~~ 286 (297)
T PRK14613 275 IQEELLPRLRQE 286 (297)
T ss_pred HHHHHHHHHHHh
Confidence 888999988865
No 42
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=99.78 E-value=5.4e-19 Score=191.32 Aligned_cols=212 Identities=19% Similarity=0.249 Sum_probs=144.1
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECC-
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAK- 254 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~- 254 (1084)
|-.||+++.-+.+.. ..++ -++|++|||||+|||.+|+ .++++.|+.+.+++- ++.|||++.|+
T Consensus 95 gtaGpl~laR~~L~~-~~~~--------~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t~vde--pSkyGvv~~d~~ 163 (371)
T KOG1322|consen 95 GTAGPLALARDFLWV-FEDA--------PFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVTKVDE--PSKYGVVVIDED 163 (371)
T ss_pred cccchHHHHHHHhhh-cCCC--------cEEEecCCeeecCCHHHHHHHHHhcCCceEEEEEeccC--ccccceEEEecC
Confidence 556899865554443 2222 5999999999999999996 689999999998765 99999999999
Q ss_pred CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccc-cccceec-
Q 001402 255 DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKS-GKEMSLY- 332 (1084)
Q Consensus 255 ~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~-~~~~~~y- 332 (1084)
.+ +|++|.|||++ +. .. -++||+|+|+++++.+++..- ..+++.++|. ..+..+|
T Consensus 164 ~g---------rV~~F~EKPkd--~v-------sn--kinaGiYi~~~~vL~ri~~~p---tSiekEifP~~a~~~~l~a 220 (371)
T KOG1322|consen 164 TG---------RVIRFVEKPKD--LV-------SN--KINAGIYILNPEVLDRILLRP---TSIEKEIFPAMAEEHQLYA 220 (371)
T ss_pred CC---------ceeEehhCchh--hh-------hc--cccceEEEECHHHHhHhhhcc---cchhhhhhhhhhhcCceEE
Confidence 45 89999999994 22 11 235999999999999888532 3389999987 4567788
Q ss_pred cccccccccCCcCccccCCcchhHHhh----hcCCCcccc--ccCCcccccccCcchhcccccccccccccccceeeccC
Q 001402 333 EDLVAAWVPAKHDWLMLRPLGKELVSK----LGKQRMFSY--CAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPA 406 (1084)
Q Consensus 333 ~DF~~~~~~~~~~y~~~~~~~~~~~~a----L~~~pi~~l--~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~ 406 (1084)
++|. .||.|.++..+|+.+ +...|.++- ++||++.. . . ++.++.+
T Consensus 221 ~~l~--------gfWmDIGqpkdf~~g~~~Yl~s~~~~t~~r~~p~~~i~-------------~-------n-vlvd~~~ 271 (371)
T KOG1322|consen 221 FDLP--------GFWMDIGQPKDFLTGFSFYLRSLPKYTSPRLLPGSKIV-------------G-------N-VLVDSIA 271 (371)
T ss_pred EecC--------chhhhcCCHHHHHHHHHHHHhhCcccCCccccCCcccc-------------c-------c-Eeecccc
Confidence 5674 467777766677664 122222210 12222211 0 0 1122211
Q ss_pred CCCceeeeccEEEe-ccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccC
Q 001402 407 TTVSDIAASAVVLS-SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFP 458 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~ 458 (1084)
.+..++.|-. |+|+++|+|++|..|++|.+++++.|+.++-|+.+++.
T Consensus 272 ----~iG~~C~Ig~~vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg 320 (371)
T KOG1322|consen 272 ----SIGENCSIGPNVVIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVG 320 (371)
T ss_pred ----ccCCccEECCCceECCCcEecCceEEEeeEEEccceechhHHHHhhhcc
Confidence 1234444444 77788888888888888888888888877777777753
No 43
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.78 E-value=5.7e-17 Score=180.17 Aligned_cols=253 Identities=15% Similarity=0.102 Sum_probs=171.7
Q ss_pred EEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
+.++||++|||++ | ..+..-+ |.=..+.++|+++.. +++++.++..+.+.+... ++ +
T Consensus 7 ~~~~apaKiNL~L-~--v~~~r~dGyH~l~s~~~~i~l~D~----v~i~~~~~~~~~i~~~~~---------~~--~--- 65 (271)
T PRK00343 7 LDWPAPAKLNLFL-H--ITGRRADGYHELQTLFQFLDWGDT----LHFEVRDDGEIRLLTPIP---------GV--P--- 65 (271)
T ss_pred EEEeeeeeEEEEe-e--cCCcCCCCCCeeeEEEEEcccceE----EEEEECCCCcEEEeCCCC---------CC--C---
Confidence 5678999999998 4 3222211 344678999999986 667766554455543210 11 1
Q ss_pred CChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcC
Q 001402 818 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMG 897 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~g 897 (1084)
.+.+++..++..+. +......|++|+|.++||.|+|||||||.++|++.+++++++.++++++|+++|..+|.
T Consensus 66 -~~~N~v~~a~~~l~---~~~~~~~~~~i~i~k~IP~gaGLGssSs~aaa~l~al~~l~~~~ls~~el~~la~~iga--- 138 (271)
T PRK00343 66 -EEDNLIVRAARLLQ---KATGTPLGADISLDKRLPMGGGLGGGSSDAATTLVALNRLWQLGLSRDELAELGLKLGA--- 138 (271)
T ss_pred -CcccHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCcCCCCcchHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC---
Confidence 12457766665543 12233469999999999999999999999999999999999999999999999988764
Q ss_pred CCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 898 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 898 t~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
|..+++.|+..+... .|. .+.+++.+ ...+++++|+...+|+++++... .....+.
T Consensus 139 ------Dvp~~l~g~~~~~~g-~g~----~~~~l~~~-------~~~~vl~~p~~~~sT~~~~~~~~--~~~~~~~---- 194 (271)
T PRK00343 139 ------DVPVFVRGHAAFAEG-IGE----ILTPVDLP-------EKWYLVVKPGVHISTAEIFSDPD--LTRDTPK---- 194 (271)
T ss_pred ------CceEEecCCcEEEEe-cCC----EEEECCCC-------CcEEEEEeCCCCcChHHHHhhhh--hccCCCh----
Confidence 665566666554442 232 34565432 24678999999999999886531 1111010
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
..+. .+......+|++.+.. .+ .|++.++.+.+.+ |+ +.|||||+ ++|+|+++.+
T Consensus 195 -~~~~----~~~~~~~~Ndle~~~~----------~~-----~P~~~~~~~~l~~~ga--~~mSGSG~--tvF~l~~~~~ 250 (271)
T PRK00343 195 -ISIA----DFLAGPFRNDCEPVVR----------KR-----YPEVAQALSWLLEYAP--SRMTGTGA--CVFAEFDTEA 250 (271)
T ss_pred -hhHH----HHHhccccCCHHHHHH----------Hh-----ChHHHHHHHHHHhCCC--eEEecccc--ceEEEcCCHH
Confidence 0111 1122223456655542 22 4888888888876 66 88999999 9999999988
Q ss_pred hHHHHHHHHHhc
Q 001402 1057 SATELRRMLEKD 1068 (1084)
Q Consensus 1057 ~ae~i~~~L~~~ 1068 (1084)
.++++.+.+++.
T Consensus 251 ~a~~~~~~l~~~ 262 (271)
T PRK00343 251 EAEQVLAQLPEW 262 (271)
T ss_pred HHHHHHHHhhhh
Confidence 888999888865
No 44
>TIGR00144 beta_RFAP_syn beta-RFAP synthase. This protein family contains several archaeal examples of beta-ribofuranosylaminobenzene 5-prime-phosphate synthase (beta-RFAP synthase), an enzyme involved in methanopterin biosynthesis. In some species, two members of this family are found. It is unclear whether both act as beta-RFAP synthase. This family is related to the GHMP kinases (Galactokinase, Homoserine kinase, Mevalonate kinase, Phosphomevalonate kinase). Members are found so far only in the Archaea and in Methylobacterium extorquens.
Probab=99.78 E-value=7.2e-17 Score=183.62 Aligned_cols=295 Identities=13% Similarity=0.076 Sum_probs=183.6
Q ss_pred EEEeceEEeeeccccccCC-cccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPP-WSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~p-y~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
+|++|+|+.+. -.|..+ ....+|| +++||+-... .+++++.++..+.+....+. .+ |.+ .
T Consensus 2 ~v~~~~rlH~g--~~d~~~~~gr~~Gg--~G~al~~~~~---~v~v~~~~~~~v~~~~~~g~--------~l--~~~--~ 62 (324)
T TIGR00144 2 IINTPSRIHLT--LIDLNGSIGRVDGG--VGLALEEPEI---VIGLKESDDMGVEFTSHAEG--------KL--GEE--Y 62 (324)
T ss_pred eeccccccccc--ccCCCCccCccccc--eEEEEeCCcE---EEEEEECCCceEEecccccc--------cc--cch--h
Confidence 57899999765 223322 1222344 6788885542 47777766655544432211 11 111 1
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG 899 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~ 899 (1084)
..+.+..++..+- +... ..|++|++.++||.++|||||||+++|++.|++++++.+++.++|++++.+.|.+.
T Consensus 63 ~~n~~~~~~~~~~---~~~g-~~~~~i~i~~~IP~~~GLGSsaa~avA~~~a~~~l~~~~ls~~el~~~a~~ge~s~--- 135 (324)
T TIGR00144 63 RRSRIMEAARKTL---KHIG-SEGFHFTVRSMFPAHSGLGSGTQLSLAVGRLVSEYYGMKFTAREIAHIVGRGGTSG--- 135 (324)
T ss_pred HHHHHHHHHHHHH---HHhC-CCCEEEEEeecCCCccCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHhCCCCCc---
Confidence 2334444443321 1111 25899999999999999999999999999999999999999999999998766422
Q ss_pred CcccchhhhcccceEEEecC---CC-cc---------ceeEEEEccCChhhhhccCcEEEEEEcCCc--chHHHH--HHH
Q 001402 900 GGWQDQIGGLYPGIKFTSSF---PG-IP---------LRLQVIPLLASPQLILELQQRLLVVFTGQV--RLAHQV--LQK 962 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~---~g-~~---------~~~~v~pl~~~~~~~~~l~~~lvlv~tg~t--r~T~~i--L~~ 962 (1084)
+|++++++||+++.... +. .+ ....+..+++| +++++++.|... ..++++ +++
T Consensus 136 ---~~va~~~~GG~vv~~G~~~~~~~~~~~~~~~~~~~~~~~~r~~~p-------~~~~vlviP~~~~t~~are~~~lp~ 205 (324)
T TIGR00144 136 ---IGVASFEDGGFIVDGGHSSKEKSDFLPSSASSAKPAPVIARYDFP-------DWNIILAIPEIDSVSGRREVNIFQK 205 (324)
T ss_pred ---cceeeeeeCCEEEECCcccccccccCcccccCCCCCCeEEecCCC-------CcEEEEEecCCCCCCcHHHHHHHHh
Confidence 57999999999877321 10 00 00112333332 478888887655 334443 554
Q ss_pred HHHHHhhcChHHHHHHHHHHHHH-HHHHHHHhhcCHHHHHHHHHHHHHH-HhhcCCCCCcHHHHHHHHHHcCCCCeEEEc
Q 001402 963 VVTRYLQRDNLLISSIKRLTELA-KNGRDALMNCDVDELGKIMLEAWRL-HQELDPHCSNEFVDRLFAFADPYCCGYKLV 1040 (1084)
Q Consensus 963 v~~~~~~~~~~~~~~l~~l~~~a-~~~~~AL~~gD~~~lg~lm~~s~~~-~~~l~~~vs~p~ld~li~~a~~ga~GaklS 1040 (1084)
. ...+.+ + ..++...+ .++..||.++|++.|++.|++.... .+.+.++.-.+.+..+++.+.. ++|+.+|
T Consensus 206 ~----~~i~~~--d-v~~~~~~~l~~l~~al~~~d~~~~~~~l~d~~~~~f~~~~~~~r~~li~~~~~~l~~-a~g~~iS 277 (324)
T TIGR00144 206 Y----CPVPLR--D-VERICHLILMKMMPAVVEGDLDAFGESVNEIQGLGFKKIERELQDPLIKRIIDSMIS-APGAGMS 277 (324)
T ss_pred c----CCCCHH--H-HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhcchhhhccccCHHHHHHHHHHHh-ccCceec
Confidence 2 000101 1 23333332 3468999999999999999875422 1122211235667776666653 5899999
Q ss_pred CCCccceeEEEEcChhhHHHHHHHHHhc---CCCCcEEEEeecCCC
Q 001402 1041 GAGGGGFALLLAKDAESATELRRMLEKD---SNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1041 GAGgGG~viaL~~~~~~ae~i~~~L~~~---~~f~v~v~~~~i~~~ 1083 (1084)
|+|+ ++|+|++++ ++++.+++.+. .+...+++.++++.+
T Consensus 278 GsGP--Tv~al~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 319 (324)
T TIGR00144 278 SFGP--TVYAVTDEK--PGNIAGAVADIFGPYGVYGRIIVTKARNR 319 (324)
T ss_pred CCCC--eEEEEecCc--hHHHHHHHHHHhhhCCCceEEEEEccCCC
Confidence 9999 999999863 44555555543 235778888888764
No 45
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.77 E-value=1.5e-17 Score=196.65 Aligned_cols=256 Identities=13% Similarity=0.102 Sum_probs=180.7
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
++.|++++++..+..+... ..+.++|+.||+++.+|+.+|. ..++++|++..+++.+..+.||++.+|++
T Consensus 109 ~~lGTa~al~~a~~~l~~~------~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~ 182 (425)
T PRK00725 109 WYRGTADAVYQNLDIIRRY------DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVACLEVPREEASAFGVMAVDEN 182 (425)
T ss_pred cccCcHHHHHHHHHHHHhc------CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEEEEecchhhcccceEEEECCC
Confidence 4578999988877766431 2468999999999999999885 46789999999988889999999999987
Q ss_pred CCccccccccccceeEecCChhh-hhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcC----CCCcccccccccc---
Q 001402 256 GILNENYALSLVDDLLQKPNVDE-LAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKSGK--- 327 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~-m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~----~~d~g~d~i~~~~--- 327 (1084)
+ +|++|.|||..++ ++ .++...++++|+|+|+.+++.++|..... ..++..|+++...
T Consensus 183 ~---------~V~~~~EKp~~~~~~~-----~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii~~l~~~~ 248 (425)
T PRK00725 183 D---------RITAFVEKPANPPAMP-----GDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDIIPKIVEEG 248 (425)
T ss_pred C---------CEEEEEECCCCccccc-----cCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHHHHHhccC
Confidence 6 7999999997642 21 12345689999999999998887764321 2355567776521
Q ss_pred cceecccccc-ccc-c-CCcCccccCCcchhHHhh----hcCCCccccc------------cCCcccccccCcchhcccc
Q 001402 328 EMSLYEDLVA-AWV-P-AKHDWLMLRPLGKELVSK----LGKQRMFSYC------------AYELLFLHFGTSSEVLDHL 388 (1084)
Q Consensus 328 ~~~~y~DF~~-~~~-~-~~~~y~~~~~~~~~~~~a----L~~~pi~~l~------------~p~a~F~h~gt~~e~l~~l 388 (1084)
++..| .|.. .|. . .++.||.|.++.++|+++ |...+-..++ .||+.|+..+.
T Consensus 249 ~v~~~-~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~-------- 319 (425)
T PRK00725 249 KVYAH-PFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRS-------- 319 (425)
T ss_pred cEEEE-EecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCC--------
Confidence 23333 2221 111 1 234699998877888876 2222211111 12333321100
Q ss_pred cccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCC
Q 001402 389 SGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDS 468 (1084)
Q Consensus 389 ~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~ 468 (1084)
+. .+.+.++.+..||.| .++.|.+|+|+++|+|++++.|++|+|++++.||++|.|.+++|+++
T Consensus 320 ---~~----~~~~~~s~i~~~~~i-~~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~-------- 383 (425)
T PRK00725 320 ---GR----RGMAINSLVSGGCII-SGAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRG-------- 383 (425)
T ss_pred ---CC----cceEEeCEEcCCcEE-cCccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCC--------
Confidence 00 112445666677655 78889999999999999999999999999999999999999999884
Q ss_pred cceEeCCCcEeeee
Q 001402 469 FRFMLPDRHCLWEV 482 (1084)
Q Consensus 469 ~~~~iP~g~~i~~v 482 (1084)
+.|+++++|+.-
T Consensus 384 --~~i~~~~~i~~~ 395 (425)
T PRK00725 384 --CVIPEGMVIGED 395 (425)
T ss_pred --CEECCCCEECCC
Confidence 888888876533
No 46
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.77 E-value=2.7e-17 Score=182.56 Aligned_cols=251 Identities=15% Similarity=0.080 Sum_probs=160.7
Q ss_pred EEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
+.+||+||||. .+..+...+ |.=..+...|+++.. +++++.++..+.+..... .+ |.+
T Consensus 2 ~~~apaKiNL~---L~v~~~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~---------~~--~~~-- 61 (269)
T PRK14609 2 ITFPNAKINLG---LNVVEKRPDGYHNLETVFYPIPLTDA----LEITVRSATKTSLTVSGI---------PI--PGD-- 61 (269)
T ss_pred CcCccccEEee---eccCCcCCCCcceeeEEEEECCCCcE----EEEEEcCCCcEEEEeCCC---------CC--CCC--
Confidence 35799999998 333222111 334568889999986 556554444454432211 11 211
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGT 898 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt 898 (1084)
.+-|++..++..+. +... ..|++|++.++||.|+|||||||.++|++.+++++++.+++.++++++|..++
T Consensus 62 ~~~Nlv~~a~~~~~---~~~~-~~~~~i~i~k~IP~~aGLGssss~aaa~l~al~~~~~~~l~~~~l~~la~~iG----- 132 (269)
T PRK14609 62 PEDNLVVKAYNLLK---KDFP-LPPVHIHLYKHIPIGAGLGGGSSDAAFMLKLLNDKFNLGLSDEELEAYAATLG----- 132 (269)
T ss_pred ccccHHHHHHHHHH---HHcC-CCCeEEEEecCCCCCCcccHHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-----
Confidence 12345555554432 1222 35899999999999999999999999999999999999999999999998774
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSI 978 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l 978 (1084)
.|...+++||..++... |+ .+.+++.+. .+.++++++|+...+|+++.+.+.+. .+.. .+
T Consensus 133 ----aDvpffl~g~~a~~~G~-Ge----~l~~l~~~~-----~~~~~vlv~P~~~~sT~~a~~~l~~~---~~~~---~~ 192 (269)
T PRK14609 133 ----ADCAFFIRNKPVYATGI-GD----IFSPIDLSL-----SGYYIALVKPDIHVSTAEAYAGIKPH---KPET---SL 192 (269)
T ss_pred ----CCceEEccCCCEEEEEe-CC----eeEECCCCC-----CCCEEEEECCCCCCChHHHHHhhhhc---Ccch---hh
Confidence 28877888888776643 32 345664321 24579999999999999988754211 1100 00
Q ss_pred HHHHH-HHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 979 KRLTE-LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 979 ~~l~~-~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
..+.. ...++...+ .+|++. .+. ...|+++++++.+++ |+++++|||||+ ++|+++++.+
T Consensus 193 ~~~~~~~~~~~~~~l-~Ndle~-------------~~~--~~~p~l~~i~~~l~~~ga~~~~mSGSG~--tvf~l~~~~~ 254 (269)
T PRK14609 193 KEIIRQPVEEWKNKL-VNDFED-------------SVF--PKYPEIAEIKEKLYRSGALYAAMSGSGS--SVFGIFKKPP 254 (269)
T ss_pred HHHHhhHHHHHHhhc-CCChHH-------------HHH--HcChHHHHHHHHHHhCCCCeEEEeCccc--eeEEEECChH
Confidence 00000 000011111 222221 111 246999999998887 899999999986 9999998754
Q ss_pred hH
Q 001402 1057 SA 1058 (1084)
Q Consensus 1057 ~a 1058 (1084)
+.
T Consensus 255 ~~ 256 (269)
T PRK14609 255 NL 256 (269)
T ss_pred Hc
Confidence 43
No 47
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism]
Probab=99.76 E-value=1.4e-16 Score=174.64 Aligned_cols=274 Identities=21% Similarity=0.199 Sum_probs=179.9
Q ss_pred eEEEEeceEEeee----ccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCC
Q 001402 739 TVKVELPVRIDFA----GGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~----Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
++.+.||+||||+ |-..|- | |.=..+...|+++.+ +.++.+++..+.+..... ..+ |
T Consensus 3 ~~~~~apAKiNL~L~V~gkr~DG--Y---Hel~sl~~~id~~D~----l~i~~~~~~~~~~~~~~~--------~~l--p 63 (289)
T COG1947 3 STKFPAPAKINLFLHVTGKRADG--Y---HELETLFQFIDLGDE----LTIRPRDDDGFIVLGTFA--------DGL--P 63 (289)
T ss_pred ceEeeccceEEEEEEecccCCCC--c---eeeEEEEEEeccCCE----EEEEECCCCCceEecCCC--------CCC--C
Confidence 4678999999998 333331 2 344578899998886 677777655544432111 112 2
Q ss_pred CCCCChHHHH-HHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLV-KSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 815 ~~~~~~~~lv-kaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
. ++ |++ ||+.... +......|++|+++++||+|+|||++||.++|++.+||++++..++.++|+.++..+.
T Consensus 64 ~--~~--NLv~rAa~ll~----~~~~~~~~v~I~l~K~IPv~aGLGGGSSdAAa~L~~Ln~lw~~~ls~~eL~~Lg~~LG 135 (289)
T COG1947 64 T--DE--NLVYRAAELLR----KRTGIAGGVSIHLDKNIPVGAGLGGGSSDAAAVLVALNELWGLGLSLEELAELGLRLG 135 (289)
T ss_pred C--cc--hHHHHHHHHHH----HHhCCCCCeeEEEEecCcccCcCccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhC
Confidence 2 12 344 5443322 2334567899999999999999999999999999999999999999999999999886
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChH
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
. |+..+++||..+.+.. |+ +++|+.-++ ...+++++++...+|+++.+.. ....+...
T Consensus 136 a---------DVPffl~g~tA~a~G~-GE----~l~~~~~~~------~~~~vl~~P~v~vsT~~vy~~~--~~~~~~~~ 193 (289)
T COG1947 136 A---------DVPFFLSGGTAFAEGR-GE----KLEPLEDPP------EKWYVLAKPGVGVSTKEVYKDP--ELTRNTPK 193 (289)
T ss_pred C---------CcCeeeeCCceEEEEc-cc----eeeECCCCC------CceEEEEeCCCCCChHHHHcCc--CcccccCC
Confidence 4 8999999999988865 43 456776322 4689999999999999998721 11111110
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEE
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLL 1051 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm-~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL 1051 (1084)
. ..+..++...++..+.+.. |+-...-..+ .|++........+ ++.+.+|||+|. |+|++
T Consensus 194 ~-----------~~~~~~~~~~~~~~~~~~~~NdLe~~~~~~-----~p~v~~~~~~l~~~ga~~~~mSGSGs--tvF~l 255 (289)
T COG1947 194 S-----------EPLIAALSLENLKQIAPFLINDLEKVALRL-----YPEVKEALSELLEYGALPARMSGSGS--TVFAL 255 (289)
T ss_pred c-----------hhhhHHHhhhhHhhhccccccchHHHHHHh-----ChHHHHHHHHHhhcccccceEecCCC--cEEEE
Confidence 0 0111112222222222111 1111112233 3777776666664 788999999999 99999
Q ss_pred EcChhhHHHHHHHHHhcCCCCcEEEEeec
Q 001402 1052 AKDAESATELRRMLEKDSNFNSEVYNWNI 1080 (1084)
Q Consensus 1052 ~~~~~~ae~i~~~L~~~~~f~v~v~~~~i 1080 (1084)
+++.+.++++.+.+.+. -..-.++.+++
T Consensus 256 ~~~~~~a~~~~~~l~~~-~~~~~~~~~~~ 283 (289)
T COG1947 256 FDTEKEAQRVAEQLPKG-VCGWVVKGVRL 283 (289)
T ss_pred eCChHHHHHHHHHhhcc-cCCcEEEEeec
Confidence 99988899999888852 12234444443
No 48
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.75 E-value=9.1e-17 Score=189.28 Aligned_cols=287 Identities=16% Similarity=0.147 Sum_probs=191.5
Q ss_pred cchhhhcCCCCCCcCCCCCCCceeeeccCC-c--CCCCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCcc
Q 001402 147 HILLVHAGGDSKRVPWANPMGKVFLPLPYL-A--ADDPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDAS 223 (1084)
Q Consensus 147 ~iLllHaGg~S~R~P~~s~~GK~ft~lP~~-~--~~~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~ 223 (1084)
..+.-|.|.. |......+.++..+|.+ + ..++.|++++++..+-.+..+ ++++++|+.||+|+.+|+.
T Consensus 64 ~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~lGta~al~~a~~~i~~~------~~~~~lv~~gD~v~~~dl~ 134 (407)
T PRK00844 64 HSLDRHISQT---WRLSGLLGNYITPVPAQQRLGKRWYLGSADAIYQSLNLIEDE------DPDYVVVFGADHVYRMDPR 134 (407)
T ss_pred HHHHHHHHhC---cCccccCCCeEEECCcccCCCCCcccCCHHHHHHHHHHHHhc------CCCEEEEecCCEEEcCCHH
Confidence 3455556532 33222235566666653 1 113578999988766665432 2468999999999999998
Q ss_pred ccC----cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEE
Q 001402 224 TMI----LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIA 299 (1084)
Q Consensus 224 ~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~ 299 (1084)
+|. ..++++|+++..++.+..+.|||+.+|+++ +|++|.+||..++- ....++..++.+|+|+
T Consensus 135 ~l~~~h~~~~~~~ti~~~~~~~~~~~~~Gvv~~d~~g---------~v~~~~eKp~~~~~----~~~~~~~~~~~~Giyi 201 (407)
T PRK00844 135 QMVDFHIESGAGVTVAAIRVPREEASAFGVIEVDPDG---------RIRGFLEKPADPPG----LPDDPDEALASMGNYV 201 (407)
T ss_pred HHHHHHHhcCCcEEEEEEecchHHcccCCEEEECCCC---------CEEEEEECCCCccc----ccCCCCCcEEEeEEEE
Confidence 885 467889999988888899999999999877 79999999986531 0122345688999999
Q ss_pred ecHHHHHHHHHHhc----CCCCccccccccc-ccceec-cccc--cccccC--CcCccccCCcchhHHhh----hcCCCc
Q 001402 300 VRGKAWEELVMLSC----SCPPMVSELLKSG-KEMSLY-EDLV--AAWVPA--KHDWLMLRPLGKELVSK----LGKQRM 365 (1084)
Q Consensus 300 f~~~~~~~ll~~~~----~~~d~g~d~i~~~-~~~~~y-~DF~--~~~~~~--~~~y~~~~~~~~~~~~a----L~~~pi 365 (1084)
|+.+++.++|.... ...++..|+++.. .+..+| +.|. ..++.. ...||.|.++.++|+++ |...+.
T Consensus 202 ~~~~~l~~~l~~~~~~~~~~~~~~~dii~~l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~ 281 (407)
T PRK00844 202 FTTDALVDALRRDAADEDSSHDMGGDIIPRLVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPV 281 (407)
T ss_pred EeHHHHHHHHHHhhcCCcccccchhhHHHHHhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCc
Confidence 99999877776321 2245666777652 122233 2232 112222 14699998877888876 332222
Q ss_pred cccc------------cCCcccccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCc
Q 001402 366 FSYC------------AYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDS 433 (1084)
Q Consensus 366 ~~l~------------~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s 433 (1084)
+.+. .||+.+. ++ .... ..+.++.+..+|.|. ++.|.+|+|+++|+|++++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~--~~-----------~~~~---~~~~~~~ig~~~~I~-~~~i~~svIg~~~~I~~~~ 344 (407)
T PRK00844 282 FNLYNREWPIYTSSPNLPPAKFV--DG-----------GGRV---GSAQDSLVSAGSIIS-GATVRNSVLSPNVVVESGA 344 (407)
T ss_pred cccCCCCCcccccCCCCCCceEe--cC-----------CCcc---ceEEeCEEcCCCEEC-CeeeEcCEECCCCEECCCC
Confidence 1111 1222221 00 0000 012334555576666 8899999999999999999
Q ss_pred EEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEeeee
Q 001402 434 LIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWEV 482 (1084)
Q Consensus 434 ~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~~v 482 (1084)
.|++|+|++++.||++|.|.+++++++ +.|.++..+...
T Consensus 345 ~i~~sii~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~i~~~ 383 (407)
T PRK00844 345 EVEDSVLMDGVRIGRGAVVRRAILDKN----------VVVPPGATIGVD 383 (407)
T ss_pred EEeeeEECCCCEECCCCEEEeeEECCC----------CEECCCCEECCC
Confidence 999999999999999999999999874 888888876553
No 49
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.75 E-value=1.9e-16 Score=177.15 Aligned_cols=261 Identities=19% Similarity=0.174 Sum_probs=167.4
Q ss_pred eEEEEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCC-CcEEEEeCCCCceeeecCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATPF 815 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~-~~i~i~s~~~~~~~~~~l~~l~~p~ 815 (1084)
.+.+.||++|||. .|..+...+ |.=..+-++|+++.+ +++++.++ ..+.+.... .+ +
T Consensus 3 ~~~~~apAKINL~---L~v~g~r~dGyH~l~s~~~~i~l~D~----l~i~~~~~~~~~~~~~~~----------~~--~- 62 (283)
T PRK14610 3 KFLVKAPAKINLF---LHIVGKSESGYHLLESLFVFVNLYDF----LEIKIGSKNRGVEFVNSL----------KI--N- 62 (283)
T ss_pred ceEEeecceEEee---eccCCcCCCCcchhheeeEEcCCCCE----EEEEECCCCCeEEEeCCC----------CC--C-
Confidence 4788999999998 444332211 344568899999986 66766543 234443210 11 1
Q ss_pred CCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 001402 816 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 895 (1084)
Q Consensus 816 ~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~ 895 (1084)
.. -|++..|+..+. +......|++|++.++||.++|||||||.++|++.+++++++ ++.+++.+++..+.
T Consensus 63 ~~---~Nlv~kA~~~l~---~~~~~~~g~~i~i~K~IP~~aGLGggSs~aaa~L~~ln~l~~--ls~~~l~~ia~~lG-- 132 (283)
T PRK14610 63 RY---NNTVQRAIGLLL---RHSPVRTNVYVKVIKNIPVSAGLAGGSADAAAVIRLLGKLWG--IDEQILNELALSVG-- 132 (283)
T ss_pred CC---CcHHHHHHHHHH---HHhCCCCCeEEEEEcCCCCCCcCCccHHHHHHHHHHHHHHhC--CCHHHHHHHHHHhC--
Confidence 11 224433333321 122234599999999999999999999999999999999996 69999999998764
Q ss_pred cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEc-CCcchHHHHHHHHHHHHhhcChHH
Q 001402 896 MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFT-GQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~t-g~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
.|+..+++||..+.+.. |+ .++|++... +..+++|+++ +..-+|.+++++........ .
T Consensus 133 -------aDvPffl~g~~a~~~G~-Ge----~l~~l~~~~-----~~~~~vl~~p~~~~~sT~~vy~~~~~~~~~~-~-- 192 (283)
T PRK14610 133 -------SDVPACLDSKTLFVRGI-GE----DILLLPDLS-----LPTYVVLVAPKGKFLSTRKVFNKYECKAFSE-P-- 192 (283)
T ss_pred -------CCCcEEEECCeEEEEec-cc----EEEECcccC-----CCCeEEEEECCCCccChHHHHHhhcccccCC-c--
Confidence 39999999999888754 43 356664210 1235888877 67889999987531111000 0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHH-HHHHHHHhhcCCCCCcHHHHHHHHHHcC--CCCeEEEcCCCccceeEEE
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIM-LEAWRLHQELDPHCSNEFVDRLFAFADP--YCCGYKLVGAGGGGFALLL 1051 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm-~~s~~~~~~l~~~vs~p~ld~li~~a~~--ga~GaklSGAGgGG~viaL 1051 (1084)
...+ .+..+++..+...+ |+-...... ..|++.++++.+.+ +++++.|||||+ |+|++
T Consensus 193 ---~~~~---------~~~~~~~~~~~~~~~Ndle~~~~~-----l~P~l~~~~~~l~~~~ga~~a~mSGSGs--Tvf~l 253 (283)
T PRK14610 193 ---IDNL---------PVAQDDLLELLKEARNDLLETAIS-----LVPEIEEILFVLESLEGCILSRMSGSGA--TCFAL 253 (283)
T ss_pred ---cccc---------ccchhHHHHHHHHhcCchHHHHHH-----hChHHHHHHHHHHhcCCCceEEEeCccc--ceeEE
Confidence 0000 11112221111111 111111122 25899999998863 789999999999 99999
Q ss_pred EcChhhHHHHHHHHHhc
Q 001402 1052 AKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1052 ~~~~~~ae~i~~~L~~~ 1068 (1084)
+++++.++++.+.+++.
T Consensus 254 ~~~~~~a~~~~~~l~~~ 270 (283)
T PRK14610 254 FEEEEAAEAAARYLKMT 270 (283)
T ss_pred eCCHHHHHHHHHHhhhh
Confidence 98877888898888764
No 50
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.71 E-value=2.8e-16 Score=186.24 Aligned_cols=254 Identities=13% Similarity=0.125 Sum_probs=169.8
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|++++++..+-.+... .++.++|+.||+++.+|+..|. ..++++|++..+++.+..+.||++.+|+++
T Consensus 98 lGTa~al~~a~~~l~~~------~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~~~~~~~~~yG~i~~d~~g- 170 (429)
T PRK02862 98 QGTADAVRKYLWHFQEW------DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLPVDEKDASGFGLMKTDDDG- 170 (429)
T ss_pred cCcHHHHHHHHHHHHhc------CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEecChhhcccceEEEECCCC-
Confidence 68999988776655331 2468999999999999998885 467899999999998889999999999877
Q ss_pred ccccccccccceeEecCChhhhhc----------ccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccccc
Q 001402 258 LNENYALSLVDDLLQKPNVDELAK----------NHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGK 327 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~----------~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~~~ 327 (1084)
+|..|.|||..+.... .+.-......++++|+|+|+.+++.+++.......+++.|+++...
T Consensus 171 --------~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~~~~~~~~dil~~l~ 242 (429)
T PRK02862 171 --------RITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNPEYTDFGKEIIPEAI 242 (429)
T ss_pred --------cEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCCChhhhHHHHHHHHh
Confidence 7999999997532110 0000012345889999999999998887642222456667765421
Q ss_pred ---cceeccccccccccCCcCccccCCcchhHHhh----h-cCCCccccccCCcccccccCcchhccccccccccccccc
Q 001402 328 ---EMSLYEDLVAAWVPAKHDWLMLRPLGKELVSK----L-GKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRR 399 (1084)
Q Consensus 328 ---~~~~y~DF~~~~~~~~~~y~~~~~~~~~~~~a----L-~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~ 399 (1084)
++.+| .+ ..||.+.++.++|+++ + ...|...+..+.... ++. ..+.....+. ..
T Consensus 243 ~~~~v~~~-~~--------~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i--~~~------~~~~~~a~~~-~~ 304 (429)
T PRK02862 243 RDYKVQSY-LF--------DGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPI--YTR------ARYLPPSKLL-DA 304 (429)
T ss_pred ccCcEEEE-Ee--------CCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCce--ecc------CCCCCCcccc-cc
Confidence 22222 12 3578887776777765 2 112211111111000 000 0000011110 11
Q ss_pred ceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECC-------------------CcEECCCCeEeccccCCC
Q 001402 400 HLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISS-------------------GIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 400 ~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~-------------------~v~IG~~~iIsg~~i~~~ 460 (1084)
.+.++.+..+|.| .++.|.+|+|+++|+|++++.|++|+|++ +++||++|.|.+++++++
T Consensus 305 ~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~ 383 (429)
T PRK02862 305 TITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKN 383 (429)
T ss_pred EEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCC
Confidence 2344566667666 78889999999999999999999999987 699999999999999884
Q ss_pred CCCCCCCCcceEeCCCcEe
Q 001402 461 AGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 461 ~~~~~~~~~~~~iP~g~~i 479 (1084)
+.|.++..+
T Consensus 384 ----------~~i~~~~~~ 392 (429)
T PRK02862 384 ----------ARIGNNVRI 392 (429)
T ss_pred ----------cEECCCcEE
Confidence 888888765
No 51
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.70 E-value=2.3e-15 Score=167.03 Aligned_cols=248 Identities=14% Similarity=0.100 Sum_probs=161.3
Q ss_pred EEeceEEeeeccccccCCcccC--CCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 742 VELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 742 v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
+.||+||||. .|..+...+ |.=..+...|+++.. +++++.+...+.+... ..+ +. .+
T Consensus 3 ~~apAKINL~---L~V~gkR~DGYH~l~sl~~~i~l~D~----l~i~~~~~~~i~i~~~----------~~~--~~-~~- 61 (288)
T PRK00650 3 FFSPAKLNLF---LQLLGKREDGFHEIVTRYQAIAFGDQ----LSLSISSRDSLQVINA----------CHL--ET-PS- 61 (288)
T ss_pred ccccceEEee---eccCCcCCCCCcceeEEEEEcCCCCE----EEEEECCCCcEEEeCC----------CCC--Cc-cc-
Confidence 4799999998 444333221 445678899999986 6666554444444311 011 11 11
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG 899 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~ 899 (1084)
|++--|+..+. +......|++|++.++||.|+|||||||.++|++.+++++++.++++++|.++|..+|.
T Consensus 62 --Nlv~ra~~~l~---~~~g~~~~v~I~i~K~IP~gaGLGggSS~aAa~L~~ln~l~~~~ls~~eL~~lA~~lGa----- 131 (288)
T PRK00650 62 --NSIWKSVALFR---RYTGITTPVSWRVVKQIPIGAGLAGGSSNAATALFALNQIFQTGLSDEELRSLAEKIGM----- 131 (288)
T ss_pred --cHHHHHHHHHH---HHhCCCCCeEEEEeeCCCCcCCcCcchhHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-----
Confidence 23333333321 12223458999999999999999999999999999999999999999999999999884
Q ss_pred CcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHH
Q 001402 900 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 979 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~ 979 (1084)
|+.+++.||..+.... |+ .+.+++.++ +.+++++.|+..-+|.++.+.. + .....
T Consensus 132 ----DvPffl~~g~a~~~G~-Ge----~l~~~~~~~------~~~~vlv~P~~~vsT~~ay~~~-~---~~~~~------ 186 (288)
T PRK00650 132 ----DTPFFFSTGSALGVGR-GE----KIIALEESV------SDRYVLYFSSEGVLTSRAFAYV-Q---PSDCS------ 186 (288)
T ss_pred ----cchhhhcCceEEEEec-CC----EEEECcCCC------CceEEEEeCCCCCChHHHHHhh-c---ccccc------
Confidence 8888888898887754 43 345664332 3478899999888998887531 1 01000
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CC-Ce--EEEcCCCccceeEEEEcCh
Q 001402 980 RLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YC-CG--YKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 980 ~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga-~G--aklSGAGgGG~viaL~~~~ 1055 (1084)
. .... .-..+|++... .. ..|++.++.+.+.+ ++ .| +.|||+|+ |+|++++++
T Consensus 187 -~---~~~~--~~~~Ndle~~~----------~~-----~~p~i~~~~~~l~~~~~~~~~~~~MSGSGs--t~F~l~~~~ 243 (288)
T PRK00650 187 -S---RKNL--EYTQNDLEKPV----------FR-----LRLDLKEKKHWLESLWAELPVHVGLTGSGA--TLFVRYPEI 243 (288)
T ss_pred -h---hhHh--ccCCCchHHHH----------HH-----hChHHHHHHHHHHhccccCCCeEEEeCccc--CEEEEeCCH
Confidence 0 0000 00122322211 11 24888888888776 33 23 78999999 999999987
Q ss_pred hhHHHHH-HHHHhc
Q 001402 1056 ESATELR-RMLEKD 1068 (1084)
Q Consensus 1056 ~~ae~i~-~~L~~~ 1068 (1084)
+.++++. +.+++.
T Consensus 244 ~~~~~~~~~~~~~~ 257 (288)
T PRK00650 244 LEKDPSYAAQIQRA 257 (288)
T ss_pred HHHHHHHHHHhHhh
Confidence 7777766 555443
No 52
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=99.69 E-value=5.6e-16 Score=181.07 Aligned_cols=245 Identities=16% Similarity=0.153 Sum_probs=157.5
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
++.|++++++..+-.+... +++.++|+.||+++.+|+..|. ..++++|+++..++.+.+++||++.+|++
T Consensus 97 ~~~Gta~al~~a~~~l~~~------~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~~~~~~~~~yG~v~~d~~ 170 (380)
T PRK05293 97 WYKGTAHAIYQNIDYIDQY------DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIEVPWEEASRFGIMNTDEN 170 (380)
T ss_pred ccCCcHHHHHHHHHHHHhC------CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEEcchhhccccCEEEECCC
Confidence 3578999988777665321 2468999999999999999885 45788999988888889999999999877
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcC----CCCcccccccccc--cc
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKSGK--EM 329 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~----~~d~g~d~i~~~~--~~ 329 (1084)
+ +|.+|.+||+.+ ...++++|+|+|+.+.+.+++..... ..++..|+++... ..
T Consensus 171 g---------~V~~~~eKp~~~-----------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~ 230 (380)
T PRK05293 171 M---------RIVEFEEKPKNP-----------KSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGE 230 (380)
T ss_pred C---------cEEEEEeCCCCC-----------CcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCC
Confidence 6 799999999753 23467999999999998888764321 1233344443311 11
Q ss_pred eec-cccccccccCCcCccccCCcchhHHhh----hcCCCccccccCCcccccccCcchhcccccccccccccccceeec
Q 001402 330 SLY-EDLVAAWVPAKHDWLMLRPLGKELVSK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSI 404 (1084)
Q Consensus 330 ~~y-~DF~~~~~~~~~~y~~~~~~~~~~~~a----L~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~ 404 (1084)
.+| +.+ ..||.+.++.++|+++ +...+...+..+..+.+- ++ . +.....++....+.++
T Consensus 231 ~v~~~~~--------~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~-~~-~------~~~~~~i~~~~~i~~~ 294 (380)
T PRK05293 231 KLYAYPF--------KGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYS-VN-P------NLPPQYIAENAKVKNS 294 (380)
T ss_pred eEEEEEe--------CCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceec-CC-c------CCCCCEECCCCEEecC
Confidence 122 111 3477777666677664 222211111111111100 00 0 0000011111112233
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcE
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
.+..+|.|. +.|.+|+|+++|+|++++.|++|+|++++.||.+|.|.+++|..+ +.|.++..
T Consensus 295 ~Ig~~~~I~--~~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~----------~~i~~~~~ 356 (380)
T PRK05293 295 LVVEGCVVY--GTVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN----------AVIGDGVI 356 (380)
T ss_pred EECCCCEEc--ceecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC----------CEECCCCE
Confidence 344454442 256789999999999999999999999999999999999988773 77777764
No 53
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=99.66 E-value=2.3e-15 Score=178.81 Aligned_cols=260 Identities=14% Similarity=0.136 Sum_probs=163.3
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
++.|+.++|++.+..... .. .+ ..+.++|+.||+++.+|+.+|. ..++++|++..+++.+.+++|||+.+|++
T Consensus 99 ~~lGt~~al~~~~~~~~~-~~-~~-~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~v~~~~~~~ygvv~~d~~ 175 (436)
T PLN02241 99 WFQGTADAVRQFLWLFED-AK-NK-NVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLPVDESRASDFGLMKIDDT 175 (436)
T ss_pred cccCcHHHHHHHHHHHHh-cc-cC-CCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEecchhhcCcceEEEECCC
Confidence 467889998887644322 10 00 1468999999999999999885 56899999999999888899999999887
Q ss_pred CCccccccccccceeEecCChhhhhcc---ccc-------CCCCcceeeeeeEEecHHHHHHHHHHhc-CCCCccccccc
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKN---HAI-------LDDGRALLDTGIIAVRGKAWEELVMLSC-SCPPMVSELLK 324 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~---~av-------~~~~~~l~s~Giy~f~~~~~~~ll~~~~-~~~d~g~d~i~ 324 (1084)
+ +|.+|.|||..+..+.. ..+ .+....++++|+|+|+++.+..++.... ...+++.|+++
T Consensus 176 ~---------~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~~~~~~dil~ 246 (436)
T PLN02241 176 G---------RIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTANDFGSEIIP 246 (436)
T ss_pred C---------CEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccccchhHHHHH
Confidence 7 89999999975421000 000 0112358899999999999988876332 22356667665
Q ss_pred ccc-c-ceec-cccccccccCCcCccccCCcchhHHhh----hcCCCccccccCCcccccccCcchhccccccccccccc
Q 001402 325 SGK-E-MSLY-EDLVAAWVPAKHDWLMLRPLGKELVSK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVG 397 (1084)
Q Consensus 325 ~~~-~-~~~y-~DF~~~~~~~~~~y~~~~~~~~~~~~a----L~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~ 397 (1084)
... + ...| +.+ ..||.+.+..++|+++ |...|...+..+.. ..+.++ ...- ...+.
T Consensus 247 ~l~~~g~~v~~~~~--------~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~-~i~~~~-~~~~------~~~~~- 309 (436)
T PLN02241 247 GAIKEGYNVQAYLF--------DGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDA-PIYTSP-RFLP------PSKIE- 309 (436)
T ss_pred HHhhcCCeEEEEee--------CCEEEECCCHHHHHHHHHHHhcCCchhhccCCCC-cccccC-CCCC------CcEec-
Confidence 421 1 2233 223 2477887766777765 32222221111111 111000 0000 00110
Q ss_pred ccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCC-------------------cEECCCCeEeccccC
Q 001402 398 RRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG-------------------IQIGSLSIVVGTNFP 458 (1084)
Q Consensus 398 ~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~-------------------v~IG~~~iIsg~~i~ 458 (1084)
...+.++.+..+|.|. ++.|.+|+|+++|+|++++.|++|+++++ ++||++|+|.+++|.
T Consensus 310 ~~~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~ 388 (436)
T PLN02241 310 DCRITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIID 388 (436)
T ss_pred CCeEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEec
Confidence 1113334555676666 77888888888888888888888888662 378888888888876
Q ss_pred CCCCCCCCCCcceEeCCCcEe
Q 001402 459 EEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 459 ~~~~~~~~~~~~~~iP~g~~i 479 (1084)
.+ +.|.++..+
T Consensus 389 ~~----------v~Ig~~~~i 399 (436)
T PLN02241 389 KN----------ARIGKNVVI 399 (436)
T ss_pred CC----------CEECCCcEE
Confidence 63 666666543
No 54
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=99.60 E-value=2.3e-14 Score=166.36 Aligned_cols=255 Identities=16% Similarity=0.157 Sum_probs=163.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
++.|++++++..+..+... .++.++|+.||+|+..++.++. ..++++|++..+++.+.++++|++.+|++
T Consensus 91 ~~~Gt~~al~~a~~~~~~~------~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~~~~~~~g~v~~d~~ 164 (361)
T TIGR02091 91 WYQGTADAVYQNLDLIEDY------DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPRKEASRFGVMQVDED 164 (361)
T ss_pred cccCcHHHHHHHHHHHHhc------CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecChHhcccccEEEECCC
Confidence 3568899887666655331 2468999999999988887775 35678889888988889999999999977
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcC----CCCccccccccc-ccce
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKSG-KEMS 330 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~----~~d~g~d~i~~~-~~~~ 330 (1084)
+ +|.+|.+||..+.-. ....+..++++|+|+|+.+.+.+++..... ..++..|+++.. .+..
T Consensus 165 ~---------~v~~~~ekp~~~~~~----~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~ 231 (361)
T TIGR02091 165 G---------RIVDFEEKPANPPSI----PGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGS 231 (361)
T ss_pred C---------CEEEEEECCCCcccc----cccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCc
Confidence 6 789999999654210 111345589999999999998777764311 123344554331 1112
Q ss_pred ec-cccccccccCCcCccccCCcchhHHhh----hcCCCccccccCCcccccccCcchhcccccccccccccccceeecc
Q 001402 331 LY-EDLVAAWVPAKHDWLMLRPLGKELVSK----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIP 405 (1084)
Q Consensus 331 ~y-~DF~~~~~~~~~~y~~~~~~~~~~~~a----L~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~ 405 (1084)
+| +.+ ..||.+.++.++|+++ |...+...+. ..+....+.+ ..+. ....+....++.++.
T Consensus 232 v~~~~~--------~~~w~digt~~~~~~a~~~~l~~~~~~~~~--~~~~~~~~~~-~~~~----~~~~i~~~~~i~~~~ 296 (361)
T TIGR02091 232 VQAYLF--------SGYWRDVGTIDSFWEANMDLVSVVPPFDLY--DRKWPIYTYN-EFLP----PAKFVDSDAQVVDSL 296 (361)
T ss_pred eEEEee--------CCEEEECCCHHHHHHHHHHHhCCCchhhcc--ccCCceecCC-CCCC----CceEecCCCEEECCE
Confidence 22 122 2467776665666655 3322221110 0001000000 0000 000111111223344
Q ss_pred CCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 406 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
+..+|.|.. ++|.+|+|+++|+|+++++|++|+|++++.||++|+|.++++.++ +.|.+++.|
T Consensus 297 ig~~~~I~~-~~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~----------~~i~~~~~i 359 (361)
T TIGR02091 297 VSEGCIISG-ATVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKN----------VRIGEGVVI 359 (361)
T ss_pred ECCCCEECC-CEEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCC----------CEECCCCEe
Confidence 555655544 488999999999999999999999999999999999999999773 888877654
No 55
>PRK05905 hypothetical protein; Provisional
Probab=99.59 E-value=1.3e-13 Score=151.03 Aligned_cols=243 Identities=18% Similarity=0.087 Sum_probs=151.0
Q ss_pred EEeceEEeeeccccccCCccc---CCCceEEEEee-ecCcccceeEEEEEcCCC--cEEEEeCCCCceeeecCCCCCCCC
Q 001402 742 VELPVRIDFAGGWSDTPPWSL---ERAGCVLNVAI-SLESSLPIGTIIETTKMS--GVLISDDAGNQLHIEDLTPIATPF 815 (1084)
Q Consensus 742 v~aP~Ri~L~Ge~tD~~py~~---~~GG~Vl~~AI-~l~~~~pi~v~v~~~~~~--~i~i~s~~~~~~~~~~l~~l~~p~ 815 (1084)
+.||++|||. .|..+... .|.=..+...| +++.. +++++.++. .+.+..... .. +.
T Consensus 3 ~~apAKINL~---L~I~gkR~DdGYHel~sv~~~i~~l~D~----l~i~~~~~~~~~i~~~~~~~---------~~--~~ 64 (258)
T PRK05905 3 YKSYAKINLG---LSIYKKCKKVTKHKLESIFILVENVYDD----IEIEKIEKNIDDIHYFDETN---------EI--LV 64 (258)
T ss_pred ccccceEEee---eeecccCCCCCCcceeEEEEEccccccE----EEEEECCCCCceEEEeCCCc---------CC--CC
Confidence 5799999998 44433222 13445788899 99886 566654432 344332110 01 11
Q ss_pred CCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 001402 816 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 895 (1084)
Q Consensus 816 ~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~ 895 (1084)
. +..-++|++-.... ......|++|++.++||.++|||||||.++|++.+|+++++ ++.++|.+++..+..
T Consensus 65 ~--~nli~~ka~~~l~~----~~~~~~~~~i~l~K~IP~~aGLGggSSDAAa~L~~Ln~l~~--ls~~~L~~ia~~lGA- 135 (258)
T PRK05905 65 Y--SRLILVKTLEWLRD----KYNIKNHFKIKIKKRIPIGSGLGSGSSNAAVLMKWILEFEG--INEINYKDVVNKLGS- 135 (258)
T ss_pred C--cchHHHHHHHHHHH----HhCCCCCeEEEEEeCCCCcCCCCCCchHHHHHHHHHHHHhC--CCHHHHHHHHHHhCC-
Confidence 1 11222265544332 22234689999999999999999999999999999999998 689999999987764
Q ss_pred cCCCCcccchhhhccc-ceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 896 MGTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~G-G~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
|+..+++| |..+.+.. |+ .++|+..++ ..+++|++++...+|.+++++.... ......
T Consensus 136 --------DVPFfl~g~~~a~~~G~-GE----~l~pl~~~~------~~~~vlv~P~~~vST~~vY~~~~~~-~~~~~~- 194 (258)
T PRK05905 136 --------DIPFFLSGYKTAYISDY-GS----QVEDLIGQF------KLTYKVIFMNVNVSTKKVFEKFDDN-QHVIKN- 194 (258)
T ss_pred --------CcceEEeCCccEEEEee-Cc----eeEECCCCC------CceEEEECCCCCCCHHHHHHhhccc-cCCccc-
Confidence 99999999 88888755 43 456774322 3468999999999999998653110 000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEE
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAW-RLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA 1052 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~-~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~ 1052 (1084)
.... ....+.++. ...+.+.. ..... ..|++.++.+.+.+ ++ .+.|||||+ |+|++-
T Consensus 195 --~~~~-------~~~~~~~~~----~~~~~NdLe~~a~~-----~~P~i~~~~~~l~~~g~-~a~MSGSGs--tvF~l~ 253 (258)
T PRK05905 195 --NFKT-------IIKNLKENI----VVNIHNDLQEPCFE-----LYPNLLYKYNELLNDGF-YTILSGAGS--SFIVIK 253 (258)
T ss_pred --chHH-------HHHHHHHhh----hcccccccHHHHHH-----hChHHHHHHHHHHhCCC-CEEEeCcch--hheEEe
Confidence 0000 011111110 01111111 11112 24889888888876 55 889999999 888874
Q ss_pred c
Q 001402 1053 K 1053 (1084)
Q Consensus 1053 ~ 1053 (1084)
+
T Consensus 254 ~ 254 (258)
T PRK05905 254 K 254 (258)
T ss_pred e
Confidence 3
No 56
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=99.52 E-value=4.1e-12 Score=135.57 Aligned_cols=216 Identities=19% Similarity=0.214 Sum_probs=148.4
Q ss_pred HHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh--cCC
Q 001402 821 FRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL--MGT 898 (1084)
Q Consensus 821 ~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~--~gt 898 (1084)
.++++.++..+. +.+....++++.++|+||.|+||.||||++.|++.|+.++.|.++++.+++++..++-.- ++.
T Consensus 51 ~~li~~~~~~v~---e~~g~~~~~~v~v~SeiP~~~GLkSSSA~~nAlv~A~~~~~g~~~~~~~i~~l~a~~S~~aGvSv 127 (278)
T COG1685 51 TRLIERCVERVR---EKYGIPLGVEVEVESEIPVGSGLKSSSAASNALVKAVLKALGEEIDDFEILRLGARASKEAGVSV 127 (278)
T ss_pred hHHHHHHHHHHH---HHcCCCcceEEEEecCCCcccCcchhHHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHHhcCceE
Confidence 456766665543 234456689999999999999999999999999999999999999999999998877654 344
Q ss_pred CCcccchhhhcccceEEEecCCCccceeEEEEc-cCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 899 GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL-LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl-~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
-|-+||.+++++||+.+.+++.- ++... .. .+...+|.-++.++.+.++--. +
T Consensus 128 TGA~DDa~AS~~GG~~iTDN~~m-----~Ilrr~~~-------~~~~vlI~~p~~k~~~~~vdv~---~----------- 181 (278)
T COG1685 128 TGAFDDACASYLGGIVITDNRKM-----RILRRLDL-------PELTVLILAPGEKRLSANVDVN---R----------- 181 (278)
T ss_pred eccchHHHHHHhCCeEEecchhh-----eehhcccc-------CCceEEEEecCCccccccCCHH---H-----------
Confidence 67899999999999998876532 22221 22 2567888888887766554111 1
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcChh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~-~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
++.+...++.+.+.-.+|+| .++|.-+-. ....|. ... +-+.+..+.|+.++.+||-|+ ..++|++++
T Consensus 182 ~r~~a~~~e~A~~lA~~G~~---~~Am~lNG~~y~~aLG--~~~---e~~~~ale~GA~~aglSGtGP--a~~Al~~~~- 250 (278)
T COG1685 182 LRLIAPVVEEAFRLALKGEY---FKAMVLNGILYCSALG--YDL---EPALKALEAGAAAAGLSGTGP--AYFALTEDP- 250 (278)
T ss_pred HHHhhHHHHHHHHHHhcccH---HHHHHHhHHHHHHHhC--CCh---HHHHHHHhcccceeccCCCCC--ceEEEecCc-
Confidence 12222233333444456665 334444432 233332 222 224455555999999999999 899999975
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeecCC
Q 001402 1057 SATELRRMLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1057 ~ae~i~~~L~~~~~f~v~v~~~~i~~ 1082 (1084)
+++.+.|.+. .+|+..++..
T Consensus 251 --~~v~ea~~~~----G~V~~t~~~~ 270 (278)
T COG1685 251 --EEVAEAWSKI----GDVIETRNVG 270 (278)
T ss_pred --HHHHHHHHhC----CeEEEEecCC
Confidence 7788889875 6677776654
No 57
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional
Probab=99.51 E-value=1.3e-12 Score=143.81 Aligned_cols=178 Identities=15% Similarity=0.055 Sum_probs=121.0
Q ss_pred EEEeceEEeeeccccccCCcccC--CCceEEEEee-ecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 741 KVELPVRIDFAGGWSDTPPWSLE--RAGCVLNVAI-SLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 741 ~v~aP~Ri~L~Ge~tD~~py~~~--~GG~Vl~~AI-~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
+..||+||||. .|..+.. + |.=..+...| +++.+ +++++.++..+.+.... .+ |. +
T Consensus 2 ~~~apaKINL~---L~v~~kr-dGyH~l~s~~~~i~~l~D~----l~i~~~~~~~~~i~~~~----------~~--p~-~ 60 (257)
T PRK04181 2 VMKAYAKVNIF---LKILGKR-GNYHELISRFVLVKDLFDE----IEFVPKSAESFELIGNF----------DC--PL-E 60 (257)
T ss_pred CccccceEEEE---EeeCcCC-CCCceeheeeeEccCcCcE----EEEEECCCCCEEEEcCC----------CC--CC-C
Confidence 35799999998 3333222 1 3445688899 89886 66665433334443210 11 11 1
Q ss_pred CChHHHHHHHHHHhhh-hhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 001402 818 NDPFRLVKSALLVTGV-IHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 895 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~-~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~ 895 (1084)
+| . .+|++...... ...... ...|++|+++++||.|+|||||||.++|++.+++++++.+++.++|.++|..+..
T Consensus 61 ~N-L-v~kA~~~l~~~~~~~~~~~~~~gv~I~i~K~IP~gaGLGggSSdAAA~L~aln~l~~~~ls~~eL~~lA~~lGa- 137 (257)
T PRK04181 61 EN-I-IYKAYQELKNKGFSNELIEFFKKKAIEVEKNIPTGAGLGGGSSDAATFLLMLNEILNLKLSLEELAEIGSKVGA- 137 (257)
T ss_pred Cc-H-HHHHHHHHHHhccccccccCCCceEEEEEeCCCCcCcccccHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCC-
Confidence 22 1 34444332210 000000 1258999999999999999999999999999999999999999999999987763
Q ss_pred cCCCCcccchhhhccc-ceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHH
Q 001402 896 MGTGGGWQDQIGGLYP-GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQK 962 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~G-G~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~ 962 (1084)
|+..+++| |..+.+.. |+ .++|++..+ .+++|++++...+|.+++++
T Consensus 138 --------DvPffl~~~~~a~~~G~-Ge----~l~~l~~~~-------~~~~lv~P~~~vsT~~vy~~ 185 (257)
T PRK04181 138 --------DVAFFISGYKSANVSGI-GE----IVEEFEEEI-------LNLEIFTPNIFCSTKAVYKA 185 (257)
T ss_pred --------CccEEecCCceEEEEee-CC----eeEECCCCC-------CeEEEECCCCCcCHHHHHHH
Confidence 99999999 77777754 43 456774221 24899999999999999864
No 58
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase. Alternate names: mevalonate diphosphate decarboxylase; pyrophosphomevalonate decarboxylase
Probab=99.44 E-value=1.9e-11 Score=137.75 Aligned_cols=225 Identities=17% Similarity=0.072 Sum_probs=143.1
Q ss_pred HHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcc
Q 001402 823 LVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGW 902 (1084)
Q Consensus 823 lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~ 902 (1084)
.++.++..+. +......+++|++.++||.++|||||||.++|++.|++++++++++.++|++++.+.|.
T Consensus 68 ~v~~~l~~~~---~~~~~~~~v~I~~~n~iP~~aGLgSSAA~~aA~~~Al~~l~~l~l~~~eL~~lA~~gsG-------- 136 (305)
T TIGR01240 68 KTSNCLDDFR---QLRKEQEKLHIVSQNNFPTAAGLASSASGLAALVSACAKLYQLPLDTSELSRIARKGSG-------- 136 (305)
T ss_pred HHHHHHHHHH---HhcCCCCceEEEEecCCCCCCccchHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC--------
Confidence 5555555443 22233468999999999999999999999999999999999999999999999998763
Q ss_pred cchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcc--hHHHHHHHHHHHHhhcChHHHHHHHH
Q 001402 903 QDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVR--LAHQVLQKVVTRYLQRDNLLISSIKR 980 (1084)
Q Consensus 903 ~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr--~T~~iL~~v~~~~~~~~~~~~~~l~~ 980 (1084)
...++++||++.+....+. .....+|++.++.+ .++...++++...... +|..+ +..+. .++.+...+++
T Consensus 137 -sa~~s~~GG~v~~~~g~~~-~~s~a~~i~~~~~~-~~~~~~v~vv~~~~k~vsSt~gm-~~~~~----ts~~~~~~v~~ 208 (305)
T TIGR01240 137 -SACRSLFGGYVAWEKGKDD-HSSAAVQVADDSDW-PQXAMCVLVVNDIKKDVSSRQGM-QLTVA----TSELFKEWIEH 208 (305)
T ss_pred -CeeeeeecCeEEEEcCCCC-CCeeEEECCCcccc-ccceEEEEEcCCCCCCCCCHHHH-HHhhh----cCccHHHHHHH
Confidence 2345899999877642211 11234566543211 0123333333333321 33333 22111 11222233444
Q ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhh-cC---CC--CCcHHHHHHHHHH---cC-CCCeEEEcCCCccceeEE
Q 001402 981 LTELAKNGRDALMNCDVDELGKIMLEAWRLHQE-LD---PH--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 981 l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~-l~---~~--vs~p~ld~li~~a---~~-ga~GaklSGAGgGG~via 1050 (1084)
..+....+.+||.++|++.||++...+...+.. +. |. ..+|..-++++.. ++ |...+...-||+ .+..
T Consensus 209 ~~~~l~~~~~ai~~~D~~~~g~~~e~~~~~mHa~~~~~~p~~~y~~~~s~~ii~~v~~~r~~g~~~~~T~DAGp--Nv~v 286 (305)
T TIGR01240 209 VVPDFEVXRKAIKTKDFATFGKETEANSLSMHATTLDAFPPFFYLNDTSKRAMSAVHTLRQGGTICYFTMDAGP--NVKV 286 (305)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhcCCCCeEEECHHHHHHHHHHHHHHhCCCcEEEEEcCCC--CEEE
Confidence 443456889999999999999997666443322 21 11 1234444444444 33 667778888999 8888
Q ss_pred EEcChhhHHHHHHHHHhcC
Q 001402 1051 LAKDAESATELRRMLEKDS 1069 (1084)
Q Consensus 1051 L~~~~~~ae~i~~~L~~~~ 1069 (1084)
|+.. ++.++|.+.+.+.+
T Consensus 287 l~~~-~~~~~v~~~~~~~~ 304 (305)
T TIGR01240 287 LYLA-ENLSKLFEFIYKLF 304 (305)
T ss_pred EEcc-ccHHHHHHHHHHhc
Confidence 8886 67888888887653
No 59
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=99.42 E-value=3.3e-12 Score=148.87 Aligned_cols=226 Identities=14% Similarity=0.102 Sum_probs=140.3
Q ss_pred CCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccce-EEEECCCCCccccccccccceeEecCChhhhh
Q 001402 206 EGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHG-VIVAAKDGILNENYALSLVDDLLQKPNVDELA 280 (1084)
Q Consensus 206 p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hG-V~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~ 280 (1084)
.+.++|+.||+++.+|+.+|. ..++++|++..+++.+..+.+| |+.+|+++ +|..|.+|+..+
T Consensus 114 ~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v~~~~~~~~g~vv~~~~~g---------~v~~~~~~~~~~--- 181 (369)
T TIGR02092 114 SEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKVKPADASEYDTILRFDESG---------KVKSIGQNLNPE--- 181 (369)
T ss_pred CCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEecCHHHccccCcEEEEcCCC---------CEEeccccCCCC---
Confidence 457999999999999999885 4578999999999877788885 55677665 577774443221
Q ss_pred cccccCCCCcceeeeeeEEecHHHHHHHHHHhc--CCCCcccccccccc-cceeccccccccccCCcCccccCCcchhHH
Q 001402 281 KNHAILDDGRALLDTGIIAVRGKAWEELVMLSC--SCPPMVSELLKSGK-EMSLYEDLVAAWVPAKHDWLMLRPLGKELV 357 (1084)
Q Consensus 281 ~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~--~~~d~g~d~i~~~~-~~~~y~DF~~~~~~~~~~y~~~~~~~~~~~ 357 (1084)
....+.+|+|+|+.+.+.+++.... ..+++..|+++... +...|. + ....||.+.++.++|+
T Consensus 182 --------~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~----~---~~~g~w~dIgt~~~l~ 246 (369)
T TIGR02092 182 --------EEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINA----Y---EYTGYLANINSVKSYY 246 (369)
T ss_pred --------CcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEE----E---ecCCceeEcCCHHHHH
Confidence 1124689999999998877775321 11222334433211 112221 0 1235788877667777
Q ss_pred hh----hcCCCccccc-cCCccc-ccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCC
Q 001402 358 SK----LGKQRMFSYC-AYELLF-LHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGE 431 (1084)
Q Consensus 358 ~a----L~~~pi~~l~-~p~a~F-~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~ 431 (1084)
++ |.......++ ..++.. ..+.. .....++....+.++.+..+|.|. +.|.+|+|+++|+|++
T Consensus 247 ~a~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~~p~~i~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~ 315 (369)
T TIGR02092 247 KANMDLLDPQNFQSLFYSSQGPIYTKVKD---------EPPTYYAENSKVENSLVANGCIIE--GKVENSILSRGVHVGK 315 (369)
T ss_pred HHHHHHhCCcchhhhcCCCCCceeeccCC---------CCCcEEcCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECC
Confidence 64 2222111001 001000 00000 001111111123344555675553 4688999999999999
Q ss_pred CcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 432 DSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 432 ~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
+|.|++|+|++++.||++|.|.++++.++ ++|.++..+
T Consensus 316 ~~~i~~sii~~~~~I~~~~~i~~~ii~~~----------~~v~~~~~~ 353 (369)
T TIGR02092 316 DALIKNCIIMQRTVIGEGAHLENVIIDKD----------VVIEPNVKI 353 (369)
T ss_pred CCEEEeeEEeCCCEECCCCEEEEEEECCC----------CEECCCCEe
Confidence 99999999999999999999999999773 777777654
No 60
>COG1907 Predicted archaeal sugar kinases [General function prediction only]
Probab=99.36 E-value=4e-10 Score=121.50 Aligned_cols=223 Identities=17% Similarity=0.175 Sum_probs=150.9
Q ss_pred cCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEecC--
Q 001402 842 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSF-- 919 (1084)
Q Consensus 842 ~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~-- 919 (1084)
.|++|.|.+.||...||||.+.++.|+..|+++++|++++-++||...-+. .-+|+. .++.-+||+..--..
T Consensus 70 ~gv~I~I~~~~P~HvGLGS~TQlaLa~a~ai~~i~gl~~~~~elA~~vgRG-----~tSgiG-v~afe~GGFIVDGGh~~ 143 (312)
T COG1907 70 EGVKIEIRSDIPAHVGLGSTTQLALAVASAILEIYGLELSIRELAFAVGRG-----GTSGIG-VYAFEYGGFIVDGGHSF 143 (312)
T ss_pred CceEEEEEecCchhcCCChHHHHHHHHHHHHHHHhcCCCCHHHHHHHHccC-----Ccccee-EEEEEECCEEEECCccc
Confidence 689999999999999999999999999999999999999999988765432 122332 567778888752211
Q ss_pred ---CCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH-HHHHHHHHHHhhcChHHHHHHHHHHH-HHHHHHHHHhh
Q 001402 920 ---PGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH-QVLQKVVTRYLQRDNLLISSIKRLTE-LAKNGRDALMN 994 (1084)
Q Consensus 920 ---~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~-~iL~~v~~~~~~~~~~~~~~l~~l~~-~a~~~~~AL~~ 994 (1084)
+..+. +.+....+|+ +|+++|+-|..+|... +--.++..++..-+. +...++.+ +..++.-|+.+
T Consensus 144 ~f~ps~~s-P~I~R~dfPe------dW~~VlaIP~~~rg~~~~~E~~if~~~~p~p~---~~~~~ls~~vLm~mmPavvE 213 (312)
T COG1907 144 GFLPSSAS-PLIFRLDFPE------DWRFVLAIPEVERGVSGRREVDIFKKYCPVPL---EEVGELSHRVLMKMMPAVVE 213 (312)
T ss_pred CcccCCCC-ceeeeecCCC------ceEEEEEecCCCccccchHHHHHHHhcCCCCH---HHHHHHHHHHHHHHhHHHHh
Confidence 11111 1133344444 5799999887665221 111111111211122 22333333 35688899999
Q ss_pred cCHHHHHHHHHHHHHHH----hhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcChhh---HHHHHHHHHh
Q 001402 995 CDVDELGKIMLEAWRLH----QELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDAES---ATELRRMLEK 1067 (1084)
Q Consensus 995 gD~~~lg~lm~~s~~~~----~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~~~~---ae~i~~~L~~ 1067 (1084)
+|++.||+.+++.++.. +.......++.+..+++.+.+.++|+.+|-=|+ ++|+++++... +.++.+++.+
T Consensus 214 ~Die~fg~~l~~iQ~l~g~~f~~~e~~~~~~~V~~iv~~m~~~a~~agqSSwGP--tvY~i~d~~~~~~~~~~~~~~~~~ 291 (312)
T COG1907 214 RDIESFGEALNEIQELGGKWFKKVEGGLQREDVKEIVDEMVEAAYGAGQSSWGP--TVYGIVDSREAGSVVRKLIDILLE 291 (312)
T ss_pred hCHHHHHHHHHHHHHHHhhhhhhhhceeccHHHHHHHHHHHHhcccccccccCC--EEEEeccccccchHHHHHHHHHHh
Confidence 99999999999988754 333323567999999999988788888886555 99999987542 4556666666
Q ss_pred cCCCCcEEEEeecCCC
Q 001402 1068 DSNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1068 ~~~f~v~v~~~~i~~~ 1083 (1084)
+. ...+|+....++.
T Consensus 292 ~g-~~gev~vT~~rN~ 306 (312)
T COG1907 292 EG-IGGEVFVTKARNR 306 (312)
T ss_pred cC-CceEEEEeccCCC
Confidence 53 6777777766553
No 61
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2.7.1.6 from EC), homoserine (2.7.1.39 from EC), mevalonate (2.7.1.36 from EC) and phosphomevalonate (2.7.4.2 from EC) kinases contain, in their N-terminal section, a conserved Gly/Ser-rich region which is probably involved in the binding of ATP [, ]. This group of kinases has been called 'GHMP' (from the first letter of their substrates).; GO: 0005524 ATP binding, 0016301 kinase activity, 0016310 phosphorylation; PDB: 3F0N_B 1PIE_A 2AJ4_A 1K47_E 3GON_A 2R3V_C 3HUL_A 1KVK_A 2R42_A 3D4J_A ....
Probab=99.31 E-value=3.6e-12 Score=111.45 Aligned_cols=67 Identities=36% Similarity=0.506 Sum_probs=62.2
Q ss_pred EEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccc
Q 001402 845 QIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPG 912 (1084)
Q Consensus 845 ~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG 912 (1084)
+|++.++||.++|||||||+++|++.+++++++.++++++|++++..+|+..+.++|.|| ++++|||
T Consensus 1 ~i~i~s~iP~~~GLgSSaa~~~a~~~a~~~~~~~~~~~~~l~~~a~~~e~~~g~~~g~d~-~~~~~GG 67 (67)
T PF00288_consen 1 DIEIDSNIPPGSGLGSSAALAVALAAALNKLFGLPLSKEELAKLAQEAERYIGKPSGIDD-AASAYGG 67 (67)
T ss_dssp EEEEEESSTTTSSSSHHHHHHHHHHHHHHHHTTTSSBHHHHHHHHHHHHHHCSSSHSHHH-HHHHHCS
T ss_pred CeEEEccCCCCCcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcCCCChhhH-HHHHhCc
Confidence 589999999999999999999999999999999999999999999999986687877655 8899997
No 62
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism]
Probab=99.29 E-value=2.2e-09 Score=114.29 Aligned_cols=207 Identities=17% Similarity=0.149 Sum_probs=122.1
Q ss_pred CCCCChHHHHHHHHH-HHHHHH-hCCCCCH-HHHHHHHHHHHHh-c-CCCCcccchhhhcccceEEEecCCCcccee-EE
Q 001402 855 GSGLGTSSILAAAVV-KALLQI-TDGDQSN-ENVARLVLLLEQL-M-GTGGGWQDQIGGLYPGIKFTSSFPGIPLRL-QV 928 (1084)
Q Consensus 855 GsGLGSSSAlavA~l-~Al~~l-~g~~ls~-~eLa~la~~~E~~-~-gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~-~v 928 (1084)
..||||||++++.++ .++..+ .+.+++. .+|.++|+.+--. . +.|+|. |+++++||++.+-++.|+....+ .+
T Consensus 107 KtGlGSSAa~~tsLt~~lfls~~~~~nvd~k~eIhklaqiAhc~aQggIGSGf-DiaaA~fGsiiyrRF~p~li~~l~qi 185 (337)
T COG3890 107 KTGLGSSAAVATSLTCGLFLSHANATNVDEKGEIHKLAQIAHCYAQGGIGSGF-DIAAAIFGSIIYRRFEPGLIPKLRQI 185 (337)
T ss_pred cCCCcchhHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhCCCCccc-hhhHhhhcceEEeecCcchhhhhHhh
Confidence 589999999999998 333333 5666776 7788888766543 3 457786 89999999999988766532111 11
Q ss_pred EEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHH---HHH
Q 001402 929 IPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGK---IML 1005 (1084)
Q Consensus 929 ~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~---lm~ 1005 (1084)
..+++. ++.+++.+++....|..+++++.+......++......++...+..+.+ -.+++.-. ++.
T Consensus 186 g~~nfg-------~y~LmmGd~a~gSeTvglV~kv~~w~ns~~peelkc~de~nsrvl~l~~----~sLdE~~s~~~~ir 254 (337)
T COG3890 186 GAVNFG-------DYYLMMGDQAIGSETVGLVCKVNKWRNSILPEELKCNDEMNSRVLNLIK----LSLDESNSKSKAIR 254 (337)
T ss_pred Cccccc-------CeeeeecccccCccchHHHHHHHHHhhcCChHHHHhHHHHHHHHHHHHh----hhHHHHHHHHHHHH
Confidence 222322 5789999999999999999987553333323222233333333332221 13332221 122
Q ss_pred HHHHHHhhcC-CCCCcHHHHHHHHHH-cC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEee
Q 001402 1006 EAWRLHQELD-PHCSNEFVDRLFAFA-DP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWN 1079 (1084)
Q Consensus 1006 ~s~~~~~~l~-~~vs~p~ld~li~~a-~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~~ 1079 (1084)
++.+-..... ..+.++....++..+ .. |++++-+.|||+|..++++.++. .++++.|... .+.+.+++
T Consensus 255 rslrritee~~adiep~kqt~~Ld~i~~l~gvl~~lipgaGggdaif~l~~~~---~e~re~w~~~---gi~i~dv~ 325 (337)
T COG3890 255 RSLRRITEEGLADIEPIKQTAALDSIFDLLGVLCDLIPGAGGGDAIFLLYRPN---IEAREAWLSK---GISIVDVN 325 (337)
T ss_pred HHHHHHHHHhccccccchhhhhhhhHHhccCceEeecccCCCCceEEEEeccc---HHHHHHHHhC---CeEEEEcc
Confidence 2211111110 013344444443333 33 99999999999999999999863 2455567654 44455444
No 63
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.29 E-value=1.5e-10 Score=121.90 Aligned_cols=185 Identities=17% Similarity=0.158 Sum_probs=140.3
Q ss_pred cccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEe
Q 001402 838 LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTS 917 (1084)
Q Consensus 838 ~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~ 917 (1084)
.+...|+.+.+.|+||.|.||+||+|..+|++.|+.+++|..++..+|+++|..+|.. | +.+|.+.+.++
T Consensus 78 ~~~~~~i~l~lqSsIPvgKG~ASSTADl~At~~A~A~~l~~~l~es~iakLcv~iEPt--------D--siiF~~~tlFd 147 (293)
T COG4542 78 KLINTGIDLLLQSSIPVGKGMASSTADLVATARATARFLGRELRESEIAKLCVSIEPT--------D--SIIFDKATLFD 147 (293)
T ss_pred ceecCCeeEEEeccccccccccccHHHHHHHHHHHHHHhCCCCCHHHHHHHHhhcCCc--------c--ceecccceeeh
Confidence 3456789999999999999999999999999999999999999999999999999952 2 25677888887
Q ss_pred cCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCH
Q 001402 918 SFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDV 997 (1084)
Q Consensus 918 ~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~ 997 (1084)
...|..+. -+... +...+|++..+.+..|.+.-+.-... .......++.++.+.+.+|+..||.
T Consensus 148 ~r~g~~~~----~~g~~------PpL~ilv~e~~~~v~T~~y~q~~r~e------~~~~~~~e~~~l~~~v~~A~~~~~~ 211 (293)
T COG4542 148 QREGRVIE----FLGEM------PPLHILVFEGKGTVETVDYNQPPRGE------KLLAPLAELGNLINLVEKALKVGDP 211 (293)
T ss_pred hccchHHH----hcCCC------CceEEEEEcCCCceeeeeccCCchhh------hhhhhHHHHHHHHHHHHHHHccCCH
Confidence 77664221 12212 24577888777776665543211001 1122345555666778899999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcC
Q 001402 998 DELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKD 1054 (1084)
Q Consensus 998 ~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~ 1054 (1084)
..+|++-+-+.-.++.. ...|.+++|.+++.+ +++|.-.+.+|. |++|.-|
T Consensus 212 ~~lG~AAT~SAv~~Q~~---LPK~~~~~lL~l~e~~~~~Gv~VAHSGt---mlGli~D 263 (293)
T COG4542 212 KLLGEAATLSAVKNQDR---LPKPGLNELLRLVEETCAIGVIVAHSGT---MLGLIYD 263 (293)
T ss_pred HHHHHHHHHHHHhhccc---cCchhHHHHHHHHHHhcccceEEeccCc---eEEeeec
Confidence 99999999998777776 457999999999988 889999998884 7776644
No 64
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=99.19 E-value=2.6e-10 Score=132.16 Aligned_cols=98 Identities=17% Similarity=0.204 Sum_probs=72.9
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
+.|++++++..+-.+. .+.++|+.||+++.+|+..+. .+++++|+++.+++ ....||++.+|+++
T Consensus 82 ~~G~~~al~~a~~~l~---------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~~~~~~~~ 150 (353)
T TIGR01208 82 PLGLAHAVYTARDFLG---------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVR--DPTAFGVAVLEDGK 150 (353)
T ss_pred CCCHHHHHHHHHHhcC---------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECC--ChhhCeEEEEcCCC
Confidence 4678888877654331 235888899999999988875 46788888888764 45789999987555
Q ss_pred CccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 257 ILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|.+|.+||..+. ..+.++|+|+|+...+ +.+.
T Consensus 151 ---------~v~~~~ekp~~~~-----------~~~~~~Giy~~~~~l~-~~l~ 183 (353)
T TIGR01208 151 ---------RILKLVEKPKEPP-----------SNLAVVGLYMFRPLIF-EAIK 183 (353)
T ss_pred ---------cEEEEEECCCCCC-----------ccceEEEEEEECHHHH-HHHH
Confidence 7999999997631 2467999999998544 4444
No 65
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only]
Probab=99.11 E-value=1.7e-08 Score=108.82 Aligned_cols=203 Identities=21% Similarity=0.191 Sum_probs=139.1
Q ss_pred ccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEecCC
Q 001402 841 SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFP 920 (1084)
Q Consensus 841 ~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~ 920 (1084)
..++++.+++++|.|+|+|.|+|.+.+.+.|++..++++ .++.++.|+.+|-..+ .|+.|+++..+|| ..++..+
T Consensus 72 ~~~~~v~~~~~~P~G~G~G~Sga~AL~~Ala~a~~~~~~--~~~a~~~AH~aEV~~g--tGLGDVvAq~~GG-lViR~~p 146 (283)
T COG1829 72 PDGVGVRIESPVPLGCGYGVSGAGALGTALALAEELGLG--EESAARIAHVAEVENG--TGLGDVVAQYTGG-LVIRVKP 146 (283)
T ss_pred ccCcceEEEecCCCCcccchhHHHHHHHHHHHHhhcCCC--HHHHHHHHHHHHHHcC--CCchHHHHHhcCc-EEEEecC
Confidence 445889999999999999999999999999999998876 8889999999997654 4677999999999 5567788
Q ss_pred CccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH-hhcCHHH
Q 001402 921 GIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDAL-MNCDVDE 999 (1084)
Q Consensus 921 g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL-~~gD~~~ 999 (1084)
|.|-...+..++.++ .+++. .+-..-+|++++..-. .+++++...++.+.| ++.+++.
T Consensus 147 G~Pg~~~vd~Ip~~~-------~~V~~-~~~g~l~T~~vi~~~~-------------~~~i~~~g~~~l~ellk~Ptle~ 205 (283)
T COG1829 147 GGPGEGEVDRIPVPG-------LRVIT-ISLGELSTKSVITDEV-------------VRKINEAGKRALAELLKNPTLEN 205 (283)
T ss_pred CCCCeEEEEEeecCC-------ceEEE-EEcccccHHHhhhhHH-------------HHHHHHHHHHHHHHHHhCCCHHH
Confidence 888766777777653 34444 4444567888876521 234444444555544 4555555
Q ss_pred HHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEe
Q 001402 1000 LGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNW 1078 (1084)
Q Consensus 1000 lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~ 1078 (1084)
+|+.+.+--+.. +.++.++...++.... +.+|+.+. -.|-++|++.+..+..+.+.+.+.+ .++...+.+
T Consensus 206 ---f~~~a~~FA~~~--Gl~~~~v~~~~~~~~~~g~l~as~~--mlg~tVFa~~~~~e~~~~~~~~~~~--~~~~~l~~~ 276 (283)
T COG1829 206 ---FMEEAREFARRT--GLMSEEVKEAAEALHSVGGLGASMA--MLGVTVFALSPEAERLAEVGKDLGA--PYDIRLIYG 276 (283)
T ss_pred ---HHHHHHHHHHHh--CcCHHHHHHHHHHhhhcCchhHhHH--hhCcEEEEeccccchHHHHHHhhcc--ccceeEEec
Confidence 455555444454 3667777777777664 55555443 3355899998544455555555544 255555544
No 66
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.10 E-value=4e-10 Score=135.16 Aligned_cols=244 Identities=15% Similarity=0.180 Sum_probs=122.7
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC--cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI--LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~--~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+..+++..+..+. +.+.++|+.||+ +...++..+. ..+.++++++.++ +..++||++.. +++
T Consensus 80 ~Gt~~al~~a~~~l~--------~~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~~~i~~~~~--~~~~~yG~v~~-~~g- 147 (456)
T PRK09451 80 LGTGHAMQQAAPFFA--------DDEDILMLYGDVPLISVETLQRLRDAKPQGGIGLLTVKL--DNPTGYGRITR-ENG- 147 (456)
T ss_pred CCcHHHHHHHHHhhc--------cCCcEEEEeCCcccCCHHHHHHHHHHhhcCCEEEEEEEc--CCCCCceEEEe-cCC-
Confidence 577887766544321 235799999998 5566776664 2334455666554 45678999754 455
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcC----CCCcccccccc----cccc
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKS----GKEM 329 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~----~~d~g~d~i~~----~~~~ 329 (1084)
+|.+|.|||...+-+ +...+++||+|+|+.+.+.+++..... ..++..|+++. ...+
T Consensus 148 --------~V~~~~EKp~~~~~~-------~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i~~g~~v 212 (456)
T PRK09451 148 --------KVVGIVEQKDATDEQ-------RQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAHQEGREI 212 (456)
T ss_pred --------eEEEEEECCCCChHH-------hhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHHHCCCeE
Confidence 799999999643211 112368999999999998887764211 22334455544 1233
Q ss_pred eeccccccccccCCcCccccCCcchhHHhhhcCCCccc--c-ccCCcccccccCcchhcccccccccccccccceeeccC
Q 001402 330 SLYEDLVAAWVPAKHDWLMLRPLGKELVSKLGKQRMFS--Y-CAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPA 406 (1084)
Q Consensus 330 ~~y~DF~~~~~~~~~~y~~~~~~~~~~~~aL~~~pi~~--l-~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~ 406 (1084)
..|..+...+..+ ..+|.+....++|+++-...+++. . ..+|..+...|+..--.+..+...+.+.+ ++.+
T Consensus 213 ~~~~~~~~~~~~G-~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~-----~v~i 286 (456)
T PRK09451 213 VAVHPQRLSEVEG-VNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEG-----NVTL 286 (456)
T ss_pred EEEecCCHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEec-----CcEE
Confidence 4442221111000 112444333456665310000100 0 12333332222100000111111111110 1122
Q ss_pred CCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccC
Q 001402 407 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
..++.|..++.|.+|+|+.+|.|+++++|++|+|+.++.||.+|.|. ++.+.
T Consensus 287 g~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~ 339 (456)
T PRK09451 287 GNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELA 339 (456)
T ss_pred CCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEEC
Confidence 33445555555666666666666666666666666666666666664 44443
No 67
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=99.08 E-value=2.8e-10 Score=103.89 Aligned_cols=81 Identities=27% Similarity=0.316 Sum_probs=69.2
Q ss_pred HHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHH
Q 001402 988 GRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLE 1066 (1084)
Q Consensus 988 ~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~ 1066 (1084)
|++||.++|++.|+++|+++|......+....+|+++.+++.+++ |++++++||||+|+|+++|+++++.++++.++|+
T Consensus 1 m~~al~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Ga~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 1 MIKALAEGDLELLGELMNENQENEPENYREVLTPEIDELKEAAEENGALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred CHHHHHCcCHHHHHHHHHHhhhhcchHHHHHcCHHHHHHHHHHHHCCCCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 578999999999999999998741111113678999999999987 7899999999999999999988889999999998
Q ss_pred hc
Q 001402 1067 KD 1068 (1084)
Q Consensus 1067 ~~ 1068 (1084)
+.
T Consensus 81 ~~ 82 (85)
T PF08544_consen 81 EH 82 (85)
T ss_dssp HH
T ss_pred Hh
Confidence 75
No 68
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=99.08 E-value=1.5e-09 Score=125.86 Aligned_cols=226 Identities=18% Similarity=0.197 Sum_probs=130.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.+.|++.+|...+-.+.. +-++|+.||++--+|+..|. ..++..|++...++-. +.|||..++++
T Consensus 82 ~~lGTag~l~~a~~~l~~---------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~~~--~~~Gvv~~~~~ 150 (358)
T COG1208 82 EPLGTAGALKNALDLLGG---------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVLDP--SEFGVVETDDG 150 (358)
T ss_pred CcCccHHHHHHHHHhcCC---------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecCCC--CcCceEEecCC
Confidence 345788876655443322 46999999999999988774 3456667776666555 99999999855
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccccc-cce-ecc
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKSGK-EMS-LYE 333 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~~~-~~~-~y~ 333 (1084)
+ . +|.+|.+||..++ +...++.+|+|+|+++++. ++.. ....++..++.|... +.. +|.
T Consensus 151 ~--~------~v~~f~ekp~~~~---------~~~~~in~Giyi~~~~v~~-~i~~-~~~~~~~~~~~~~l~~~~~~v~~ 211 (358)
T COG1208 151 D--G------RVVEFREKPGPEE---------PPSNLINAGIYIFDPEVFD-YIEK-GERFDFEEELLPALAAKGEDVYG 211 (358)
T ss_pred C--c------eEEEEEecCCCCC---------CCCceEEeEEEEECHHHhh-hccc-CCcccchhhHHHHHHhCCCcEEE
Confidence 2 1 7999999996421 3345889999999999887 2221 123344445554421 221 332
Q ss_pred ccccccccCCcCccccCCcchhHHhh---hcC-CCccccccCCcccccccCcchhcccccccccccccccceeeccCCCC
Q 001402 334 DLVAAWVPAKHDWLMLRPLGKELVSK---LGK-QRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTV 409 (1084)
Q Consensus 334 DF~~~~~~~~~~y~~~~~~~~~~~~a---L~~-~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g 409 (1084)
|. .+.||.|.++.++|.++ +.. ..... ..+...... . +.+ ..+ ..+.....+
T Consensus 212 -~~------~~g~W~dig~p~d~~~a~~~~~~~~~~~~-~~~~~~~~~-~---------~~~-~~i-----~gp~~ig~~ 267 (358)
T COG1208 212 -YV------FEGYWLDIGTPEDLLEANELLLRGDGKSP-LGPIEEPVV-I---------IRS-AYI-----IGPVVIGPG 267 (358)
T ss_pred -EE------eCCeEEeCCCHHHHHHHHHHHHhcccccc-ccccccccc-c---------ccc-ceE-----eCCEEECCC
Confidence 10 13388888776676654 111 10000 000000000 0 000 100 011122223
Q ss_pred ceeeeccEEEe-ccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 410 SDIAASAVVLS-SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 410 ~~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
|.|..++.|.. ++|+++|+|+.++.|.+|+|++++.||+++.|.+.+|..
T Consensus 268 ~~i~~~~~i~~~~~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~ 318 (358)
T COG1208 268 AKIGPGALIGPYTVIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGE 318 (358)
T ss_pred CEECCCCEECCCcEECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcC
Confidence 34444444433 677777777777777777777777777777777777655
No 69
>PLN02407 diphosphomevalonate decarboxylase
Probab=99.01 E-value=2.8e-08 Score=112.08 Aligned_cols=208 Identities=18% Similarity=0.138 Sum_probs=124.6
Q ss_pred EEEEEe--cCCCCCCCChHHHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEecCCC
Q 001402 845 QIRTWA--NVPRGSGLGTSSILAAAVVKALLQITDGDQS-NENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG 921 (1084)
Q Consensus 845 ~I~i~S--~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls-~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g 921 (1084)
+++|.| ++|.++|||||||..+|++.|++.+++++++ ..+|..+|. .| +|. | ..+++||++.+.....
T Consensus 105 ~~~I~S~N~~PtaaGLaSSAs~~aAl~~al~~~~~~~~~~~~~ls~lAr-----~G--SGS-a-~rS~~Gg~v~w~~G~~ 175 (343)
T PLN02407 105 HVHIASYNNFPTAAGLASSAAGFACLVFALAKLMNVKEDFPGELSAIAR-----QG--SGS-A-CRSLYGGFVKWNMGKK 175 (343)
T ss_pred cEEEEeccCCccccchHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHh-----cc--ChH-H-HHHhhCCeEEecCCCC
Confidence 456655 9999999999999999999999999999999 999999987 33 332 2 3489999998875411
Q ss_pred -ccceeEEEEccCChhhhhccCcEEEEEEcCC-cc-hHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHHHHHHHHhhcCH
Q 001402 922 -IPLRLQVIPLLASPQLILELQQRLLVVFTGQ-VR-LAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDV 997 (1084)
Q Consensus 922 -~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~-tr-~T~~iL~~v~~~~~~~~~~~~~~l~~-l~~~a~~~~~AL~~gD~ 997 (1084)
....-..+|+... ..-.++..-+++++.+. .. +|..+-.-+. .++-+...+++ ..+...++.+||+++|+
T Consensus 176 ~d~~ds~A~~i~~~-~~~~dl~~~i~vv~~~~K~vsSt~GM~~tv~-----TSp~~~~w~~~~~~~~~~~~~~Ai~~~Df 249 (343)
T PLN02407 176 EDGSDSIAVQLADE-KHWDDLVIIIAVVSSRQKETSSTSGMRESVE-----TSPLLQHRAKEVVPKRILQMEEAIKNRDF 249 (343)
T ss_pred CCCCceeEEECCCc-cCCccceEEEEEEcCCcCCCCchHHHHHhhh-----cChhHHHHHHhhhHHHHHHHHHHHHhcCH
Confidence 1111223455321 11111334445555543 22 3333322111 11111122333 33445678999999999
Q ss_pred HHHHHHHHHHHHHHhhc----CCCC--CcHHHHHHHHHH---cC--CC-CeEEEcCCCccceeEEEEcChhhHHHHHHHH
Q 001402 998 DELGKIMLEAWRLHQEL----DPHC--SNEFVDRLFAFA---DP--YC-CGYKLVGAGGGGFALLLAKDAESATELRRML 1065 (1084)
Q Consensus 998 ~~lg~lm~~s~~~~~~l----~~~v--s~p~ld~li~~a---~~--ga-~GaklSGAGgGG~viaL~~~~~~ae~i~~~L 1065 (1084)
+.||++...+...+..+ .|.+ .+|.--.+++.. ++ |. ..+.-.-||+ .+..|+.+++..++|.+.+
T Consensus 250 ~~~gei~e~ds~~mHA~~l~s~Pp~~Y~~~~S~~ii~~V~~~r~~~g~~~v~yT~DAGP--Nv~vl~~~~~~~~~v~~~~ 327 (343)
T PLN02407 250 ASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQVAYTFDAGP--NAVLIALNRKVAAQLLQRL 327 (343)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCeEEeChHHHHHHHHHHHHHHhcCCccEEEEecCCC--CEEEEEChhhhHHHHHHHH
Confidence 99999976554332221 1111 134444444443 32 43 5677789999 8888888643333488766
Q ss_pred HhcC
Q 001402 1066 EKDS 1069 (1084)
Q Consensus 1066 ~~~~ 1069 (1084)
.+.+
T Consensus 328 ~~~~ 331 (343)
T PLN02407 328 LYYF 331 (343)
T ss_pred HHhc
Confidence 6653
No 70
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.00 E-value=3.2e-09 Score=127.44 Aligned_cols=104 Identities=18% Similarity=0.201 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|+.++++..+-.+.. ..+.++|+.||+ +...++..|. ..++++++...+++ ....||++.+|++
T Consensus 79 ~Gt~~al~~a~~~l~~-------~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~~~~~--~~~~~g~v~~d~~ 149 (459)
T PRK14355 79 LGTGHAVACAAPALDG-------FSGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLTARLE--NPFGYGRIVRDAD 149 (459)
T ss_pred CCHHHHHHHHHHHhhc-------cCCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCcCCEEEEcCC
Confidence 4677776654443321 135899999998 4456666663 35678887776653 3367999999887
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+ +|.+|.+||....- +....++.+|+|+|+.+.+.+++.
T Consensus 150 g---------~v~~~~ek~~~~~~-------~~~~~~~~~Giy~~~~~~l~~~l~ 188 (459)
T PRK14355 150 G---------RVLRIVEEKDATPE-------ERSIREVNSGIYCVEAAFLFDAIG 188 (459)
T ss_pred C---------CEEEEEEcCCCChh-------HhhccEEEEEEEEEeHHHHHHHHH
Confidence 6 79999999843110 012246799999999988767664
No 71
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.97 E-value=2.8e-09 Score=128.54 Aligned_cols=99 Identities=18% Similarity=0.295 Sum_probs=68.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAK 254 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~ 254 (1084)
+.|+.++++..+-.+.. ..+.++|+.||+ +...++..+. ..++++|++..+++ ..+.||++.+|+
T Consensus 81 ~~Gt~~al~~~~~~l~~-------~~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti~~~~~~--~~~~yG~v~~d~ 151 (481)
T PRK14358 81 QLGTGDAFLSGASALTE-------GDADILVLYGDTPLLRPDTLRALVADHRAQGSAMTILTGELP--DATGYGRIVRGA 151 (481)
T ss_pred cCCcHHHHHHHHHHhhC-------CCCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCceEEEECC
Confidence 45778877654433321 123489999998 4455566653 46788888888776 456799999998
Q ss_pred CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHH
Q 001402 255 DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKA 304 (1084)
Q Consensus 255 ~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~ 304 (1084)
++ +|.+|.|||..++=. ...-++.+|+|+|+.+.
T Consensus 152 ~g---------~v~~~~Ek~~~~~~~-------~~~~~~n~Giyi~~~~~ 185 (481)
T PRK14358 152 DG---------AVERIVEQKDATDAE-------KAIGEFNSGVYVFDARA 185 (481)
T ss_pred CC---------CEEEEEECCCCChhH-------hhCCeEEEEEEEEchHH
Confidence 77 799999999753200 00124689999999775
No 72
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism]
Probab=98.95 E-value=1.8e-07 Score=104.69 Aligned_cols=224 Identities=19% Similarity=0.202 Sum_probs=141.8
Q ss_pred HHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCc
Q 001402 822 RLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGG 901 (1084)
Q Consensus 822 ~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G 901 (1084)
.-++.++..+. ++.....++.|...++.|.+.|||||||.++|+..|+++++++.+|..+|.++|... +++|
T Consensus 72 ~k~~~~ld~~R---~~~~~~~~~~i~s~n~~ptaaGLaSSaag~AAl~~Al~~~~~~~~d~~~lS~~AR~g-----SGSa 143 (329)
T COG3407 72 EKARRVLDRFR---KEYGISFKVKIVSYNNFPTAAGLASSAAGAAALAAALNRLYDLDLDDEFLSRIARLG-----SGSA 143 (329)
T ss_pred HHHHHHHHHHH---HhhcccceEEEEEecCCCccccccccHHHHHHHHHHHHhhhccCCCHHHHHHHHHHh-----ccch
Confidence 45666666554 122335678899999999999999999999999999999999999999999998643 3332
Q ss_pred ccchhhhcccceEEEecCCCccc-eeEEEEccCChhhhhccCcEEEEEEcCCcc-hHHHHHHHHHHHHhhcChHHHHHHH
Q 001402 902 WQDQIGGLYPGIKFTSSFPGIPL-RLQVIPLLASPQLILELQQRLLVVFTGQVR-LAHQVLQKVVTRYLQRDNLLISSIK 979 (1084)
Q Consensus 902 ~~Dq~a~~~GG~~~~~~~~g~~~-~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr-~T~~iL~~v~~~~~~~~~~~~~~l~ 979 (1084)
.-+++||+......+|... ...+.++..+++ +..-++++.+..++ .+++..+.-+. .++-+...+.
T Consensus 144 ----~RS~~Gg~~~W~~~~g~~~~~~~~~~~~~~~e----~~~i~~~~~~~~k~vsS~~gm~~~~~----tS~~y~~w~~ 211 (329)
T COG3407 144 ----SRSIFGGFVLWEKGEGEDSAAEQLFRLDLWKE----LAMIVLVISPKKKKVSSREGMQLTAE----TSPFYDAWLE 211 (329)
T ss_pred ----hhhhcCCeeEeccCCCCccceeeeccccCccc----cceEEEEEccccCCCCchHHHHHHHH----cChHHHHHHH
Confidence 3588999977665443221 112334444432 34555555554433 34443332111 1122223344
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-HHhhcC---CC--CCcHHHHHHHHHH---cC-CCCeEEEcCCCccceeE
Q 001402 980 RLTELAKNGRDALMNCDVDELGKIMLEAWR-LHQELD---PH--CSNEFVDRLFAFA---DP-YCCGYKLVGAGGGGFAL 1049 (1084)
Q Consensus 980 ~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~-~~~~l~---~~--vs~p~ld~li~~a---~~-ga~GaklSGAGgGG~vi 1049 (1084)
.......++..++.++|++.|+++..++-. .+..+. |+ .-+++..++++.+ ++ |...+...-||+ .++
T Consensus 212 ~~~~~~~~m~~~~~~~Df~~i~~~~e~dsl~mHA~l~~s~p~~~y~~~~s~~ii~~v~~~r~~g~~~~fT~DaGP--nV~ 289 (329)
T COG3407 212 HSEEDLEEMKEAIREKDFEKIGELAENDSLEMHATLMSSGPPFFYLTDESLRIIEFVHELRKEGNAVYFTMDAGP--NVK 289 (329)
T ss_pred HHHHhHHHHHHHHhccCHHHHHHHHHhhHHHHHHHHhccCCceEEECccHHHHHHHHHHHHhcCCceEEEEcCCC--ceE
Confidence 444455678999999999999999765533 222222 11 1224444444444 33 445567778888 899
Q ss_pred EEEcChhhHHHHHHHHHhc
Q 001402 1050 LLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1050 aL~~~~~~ae~i~~~L~~~ 1068 (1084)
+++.+ +..+++.+.+.+.
T Consensus 290 v~~~~-~~l~~~~~~~~~~ 307 (329)
T COG3407 290 VITLE-ENLIDLLEILKTL 307 (329)
T ss_pred EEEec-ccHHHHHHHHhhc
Confidence 99986 6677777777764
No 73
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.89 E-value=1.5e-08 Score=121.62 Aligned_cols=106 Identities=16% Similarity=0.200 Sum_probs=69.6
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC--cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI--LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~--~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+..+++..+-.+... +.+.++|+.||+ +...++..+. ..++++++++.+++ ....||++..+ ++
T Consensus 80 ~Gt~~al~~a~~~l~~~------~~d~vlv~~gD~P~i~~~~i~~li~~~~~~~~~l~~~~~~--~~~~~g~v~~~-~g- 149 (456)
T PRK14356 80 LGTGHALQCAWPSLTAA------GLDRVLVVNGDTPLVTTDTIDDFLKEAAGADLAFMTLTLP--DPGAYGRVVRR-NG- 149 (456)
T ss_pred CCcHHHHHHHHHHHhhc------CCCcEEEEeCCcccCCHHHHHHHHHHHhcCCEEEEEEEcC--CCCCceEEEEc-CC-
Confidence 46777665544433221 246899999998 3334444443 23677888887765 34689999774 55
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|.+|.|||+..... ..+..-++++|+|+|+.+.+.+++.
T Consensus 150 --------~V~~~~ek~~~~~~~-----~~~~~~~~~~GiY~f~~~~l~~ll~ 189 (456)
T PRK14356 150 --------HVAAIVEAKDYDEAL-----HGPETGEVNAGIYYLRLDAVESLLP 189 (456)
T ss_pred --------eEEEEEECCCCChHH-----hhhhcCeEEEEEEEEEHHHHHHHHH
Confidence 799999999753211 0122336799999999998877765
No 74
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=8.8e-09 Score=110.76 Aligned_cols=254 Identities=16% Similarity=0.197 Sum_probs=143.9
Q ss_pred cCCCCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEE
Q 001402 177 AADDPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 177 ~~~~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
+...|.|++-.||--...|... +|+.|+|+-+|+--.|....|. ..+.-.|.++..++.+.|+|||.++.
T Consensus 84 ~E~~plGtaGgLyhFrdqIl~g------~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~tkvs~e~asnfG~lV~ 157 (407)
T KOG1460|consen 84 REDNPLGTAGGLYHFRDQILAG------SPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLVTKVSREQASNFGCLVE 157 (407)
T ss_pred ccCCCCCcccceeehhhHHhcC------CCceEEEEecceecCCcHHHHHHHHhhcCCceEEEEEEecHhHhhccCeeee
Confidence 3445556665565444444443 5889999999998888888884 57888999999999999999999999
Q ss_pred CCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCc---ccccc---ccc
Q 001402 253 AKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPM---VSELL---KSG 326 (1084)
Q Consensus 253 d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~---g~d~i---~~~ 326 (1084)
|++.. +|..+.+||+-=- .-.++.|+|+|+++.+..+-.-.....|. -+|+- +.+
T Consensus 158 dP~t~--------evlHYveKPsTfv-----------Sd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~ 218 (407)
T KOG1460|consen 158 DPSTG--------EVLHYVEKPSTFV-----------SDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGP 218 (407)
T ss_pred cCCcC--------ceEEeecCcchhh-----------hcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCc
Confidence 97742 7899999998510 12568999999998854432211001110 01110 000
Q ss_pred c-cceecccccccccc-------CCcCccccCCc-chhHHhh---hcCCCccccccCCcccc-cccCcchhccccccccc
Q 001402 327 K-EMSLYEDLVAAWVP-------AKHDWLMLRPL-GKELVSK---LGKQRMFSYCAYELLFL-HFGTSSEVLDHLSGDVS 393 (1084)
Q Consensus 327 ~-~~~~y~DF~~~~~~-------~~~~y~~~~~~-~~~~~~a---L~~~pi~~l~~p~a~F~-h~gt~~e~l~~l~~d~~ 393 (1084)
. .+.+=-|.+.++.. .+.+||+-.-+ |.+++.. |+..+- +. |+.-. --||..+++....-+.+
T Consensus 219 ~d~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~---t~-p~~Lak~pgt~a~IigdVyIhPs 294 (407)
T KOG1460|consen 219 ADFIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKR---TH-PARLAKGPGTQAEIIGDVYIHPS 294 (407)
T ss_pred cceEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhh---cC-chhhcCCCCCCceEEeeeEEcCc
Confidence 0 11121244444421 23567764322 2332210 110000 00 11111 01232233221111111
Q ss_pred ccccc-cce-eeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 394 GLVGR-RHL-CSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 394 ~l~~~-~~~-~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
-..+. .++ -+.-+..++.|..|..+++|+|-.+|.|.++++|-||+|+=..+||+=++|.+.++..
T Consensus 295 akvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~ 362 (407)
T KOG1460|consen 295 AKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEP 362 (407)
T ss_pred ceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeeccccccc
Confidence 00000 000 0112223456778888888888888888888888888888888888888888877644
No 75
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=98.81 E-value=3.8e-08 Score=117.81 Aligned_cols=104 Identities=14% Similarity=0.297 Sum_probs=69.9
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccCc--CCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMIL--PEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~~--~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|++++++..+..+.. .+.++|+.||+ +...++..+.. ...++++++.+++ ..+.+|++..|+++
T Consensus 75 ~G~~~ai~~a~~~l~~--------~~~~lv~~~D~p~i~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~g- 143 (451)
T TIGR01173 75 LGTGHAVLQALPFLPD--------DGDVLVLYGDVPLISAETLERLLEAHRQNGITLLTAKLP--DPTGYGRIIRENDG- 143 (451)
T ss_pred CchHHHHHHHHHhcCC--------CCcEEEEECCcCCcCHHHHHHHHHHHhhCCEEEEEEecC--CCCCCCEEEEcCCC-
Confidence 4677777665554322 25799999998 33445555531 2235777777763 45679999998776
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+|.+|.|||...+-. ....++.+|+|+|+.+.+.+++..
T Consensus 144 --------~v~~~~ek~~~~~~~-------~~~~~~~~G~y~~~~~~l~~~l~~ 182 (451)
T TIGR01173 144 --------KVTAIVEDKDANAEQ-------KAIKEINTGVYVFDGAALKRWLPK 182 (451)
T ss_pred --------CEEEEEEcCCCChHH-------hcCcEEEEEEEEEeHHHHHHHHHh
Confidence 789999998753100 123467999999999997777653
No 76
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.80 E-value=5.7e-08 Score=116.22 Aligned_cols=239 Identities=12% Similarity=0.169 Sum_probs=130.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC---cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI---LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~---~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|+.++++..+-.+.. ..+.++|+.||+ +...++..+. ..++++++.+.++ .....||++..+ +
T Consensus 81 ~~G~~~sl~~a~~~l~~-------~~~~~lv~~~D~P~i~~~~l~~l~~~~~~~~~~~i~~~~~--~~~~~~g~~~~~-~ 150 (446)
T PRK14353 81 RLGTAHAVLAAREALAG-------GYGDVLVLYGDTPLITAETLARLRERLADGADVVVLGFRA--ADPTGYGRLIVK-G 150 (446)
T ss_pred CCCcHHHHHHHHHHHhc-------cCCCEEEEeCCcccCCHHHHHHHHHhHhcCCcEEEEEEEe--CCCCcceEEEEC-C
Confidence 34677777655444321 245799999998 3344444443 3567888888775 345789998873 4
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCC----CCccccccccc----c
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSC----PPMVSELLKSG----K 327 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~----~d~g~d~i~~~----~ 327 (1084)
+ +|.+|.|||+.+.-. ....+..+|+|+|+.+.+.++++..... ..+..|.++.. .
T Consensus 151 g---------~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~~g~ 214 (446)
T PRK14353 151 G---------RLVAIVEEKDASDEE-------RAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIARAEGL 214 (446)
T ss_pred C---------eEEEEEECCCCChHH-------hhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHHHCCC
Confidence 4 689999999753200 1124779999999998877776532110 00111111110 0
Q ss_pred cceeccccccccccCCcCccccCCcchhHHhh---hcC----CCcc---ccccCCcccccccCcchhccccccccccccc
Q 001402 328 EMSLYEDLVAAWVPAKHDWLMLRPLGKELVSK---LGK----QRMF---SYCAYELLFLHFGTSSEVLDHLSGDVSGLVG 397 (1084)
Q Consensus 328 ~~~~y~DF~~~~~~~~~~y~~~~~~~~~~~~a---L~~----~pi~---~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~ 397 (1084)
.+.+| ++ +..+|.+..+.++|..+ +.. ..++ ++..|...++| .. ..+.+.+.+..
T Consensus 215 ~v~~~-~~-------~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~I~~~~~i~~ 279 (446)
T PRK14353 215 RVAVV-EA-------PEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFS--YD-----TVIGRDVVIEP 279 (446)
T ss_pred eEEEE-ec-------ChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEEC--Cc-----eEECCCCEECC
Confidence 11111 11 12345554433344321 000 0011 11112221111 11 11122222211
Q ss_pred cccee-eccCCCCceeeeccEEEeccccCCceeCCCcEEE-EcEECCCcEECCCCeEeccccCCC
Q 001402 398 RRHLC-SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 398 ~~~~~-~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
...+- +..+..+|.|..++.|.+|+|+.+|+|+++++|. +|+|++++.||.+|.|.++.|..+
T Consensus 280 ~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~ 344 (446)
T PRK14353 280 NVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG 344 (446)
T ss_pred CCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC
Confidence 11110 1123345556666777789999999999999997 899999999999999988887663
No 77
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.78 E-value=1.4e-07 Score=114.09 Aligned_cols=108 Identities=15% Similarity=0.226 Sum_probs=73.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcc--cccCccccC----cCCCcEEEEEEEcChhccccceEEEEC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVL--PCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAA 253 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I--~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d 253 (1084)
.+.|+.++++..+-.+... ..+.++|+.||+. ...++.+|. ..++++|++..++ ...+.||++..|
T Consensus 79 ~~~Gt~~si~~al~~l~~~------~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~~~~--~~p~~yg~~~~~ 150 (482)
T PRK14352 79 EQPGTGHAVQCALEALPAD------FDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLTTTL--DDPTGYGRILRD 150 (482)
T ss_pred CCCCcHHHHHHHHHHhccC------CCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEEeec--CCCCCCCEEEEC
Confidence 3457777776555443221 2457999999984 344555553 3567777776654 356789999988
Q ss_pred CCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 254 KDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 254 ~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+++ +|.+|.|||..++-. ....++.||+|+|+.+.+.+++..
T Consensus 151 ~~g---------~V~~~~EKp~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~~ 192 (482)
T PRK14352 151 QDG---------EVTAIVEQKDATPSQ-------RAIREVNSGVYAFDAAVLRSALAR 192 (482)
T ss_pred CCC---------CEEEEEECCCCCHHH-------hhcceEEEEEEEEEHHHHHHHHHh
Confidence 776 799999999853211 112357899999999998887764
No 78
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.76 E-value=5.4e-08 Score=116.53 Aligned_cols=102 Identities=16% Similarity=0.177 Sum_probs=72.1
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|++.+++..+-.+. ..+.++|+.||+ +...++.+|. .+++++|++..+++ ..+.||++..| +
T Consensus 73 ~g~~~ai~~a~~~l~--------~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~~--~~~~~g~v~~d-~ 141 (448)
T PRK14357 73 LGTAHAVMCARDFIE--------PGDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADLE--DPTGYGRIIRD-G 141 (448)
T ss_pred CChHHHHHHHHHhcC--------cCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEcC--CCCCcEEEEEc-C
Confidence 467777665554331 136899999997 5566766663 45789999888875 45789999887 4
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+ +| .+.|||..++-. ....++.+|+|+|+.+.+.+++..
T Consensus 142 g---------~v-~~~e~~~~~~~~-------~~~~~~~~GiYv~~~~~l~~~~~~ 180 (448)
T PRK14357 142 G---------KY-RIVEDKDAPEEE-------KKIKEINTGIYVFSGDFLLEVLPK 180 (448)
T ss_pred C---------eE-EEEECCCCChHH-------hcCcEEEeEEEEEEHHHHHHHHHh
Confidence 4 57 899988653211 123468999999999988777753
No 79
>PF10509 GalKase_gal_bdg: Galactokinase galactose-binding signature; InterPro: IPR019539 This entry represents a highly conserved galactokinase signature sequence which appears to be present in all galactokinases, irrespective of how many other ATP binding sites, etc that they carry []. The function of this domain appears to be to bind galactose [], and it is normally located at the N terminus of these enzymes []. It is associated with IPR013750 from INTERPRO and IPR006204 from INTERPRO. While all enzymes in this entry posses galactokinase activity, some are annotated as N-acetylgalactosamine kinases as they also posses this enzyme activity.; PDB: 1PIE_A 1WUU_A 1S4E_D 2A2C_A 2A2D_A 2AJ4_A 2DEJ_A 2CZ9_A 2DEI_A 3V5R_A ....
Probab=98.74 E-value=1.2e-08 Score=84.27 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=31.1
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEE
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIET 787 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~ 787 (1084)
++++||||++|+|||+||+ ||.||++||++++. +.+++
T Consensus 14 ~~~~APGRvnliGeHtDy~------gG~Vl~~Ai~~~~~----~a~~~ 51 (52)
T PF10509_consen 14 VVASAPGRVNLIGEHTDYN------GGFVLPAAIDLRTY----VAVSP 51 (52)
T ss_dssp EEEEEEEEEEEE-TT-GGG------T-EEEEEEEEEEEE----EEEEE
T ss_pred EEEECCceEEecCcccccC------CCeEEEEEeeccEE----EEEEc
Confidence 6899999999999999997 99999999999976 55554
No 80
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.73 E-value=9.4e-08 Score=114.49 Aligned_cols=105 Identities=14% Similarity=0.240 Sum_probs=72.4
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAK 254 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~ 254 (1084)
+.|+.++++..+-.+.. ..+.++|+.||+ +...++..+. ..++++|+++.+++ ..+.||+..+|+
T Consensus 76 ~~G~~~sv~~~~~~l~~-------~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d~ 146 (450)
T PRK14360 76 QLGTGHAVQQLLPVLKG-------FEGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARLP--NPKGYGRVFCDG 146 (450)
T ss_pred cCCcHHHHHHHHHHhhc-------cCCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEecC--CCCCccEEEECC
Confidence 35777766544433321 134699999998 4455555553 45678887776553 456699999988
Q ss_pred CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 255 DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 255 ~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
++ +|.+|.+||+....+ +...++.+|+|+|+.+.+.+++.
T Consensus 147 ~g---------~v~~~~ek~~~~~~~-------~~~~~~~~Giy~f~~~~l~~~~~ 186 (450)
T PRK14360 147 NN---------LVEQIVEDRDCTPAQ-------RQNNRINAGIYCFNWPALAEVLP 186 (450)
T ss_pred CC---------CEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHHHHh
Confidence 77 799999999753221 22347899999999988888775
No 81
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.68 E-value=2.3e-07 Score=110.39 Aligned_cols=221 Identities=13% Similarity=0.166 Sum_probs=114.7
Q ss_pred CCeEEEEcCCcccc--cCccccCcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhccc
Q 001402 206 EGGIFTMTGDVLPC--FDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNH 283 (1084)
Q Consensus 206 p~gVlV~sgD~I~~--md~~~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~ 283 (1084)
.+.|+|+.||+.+. -++..+...++++|+.+.+++ ....||++..| ++ +|..|.+||....
T Consensus 93 ~d~vlv~~gD~p~~~~~~l~~l~~~~~~~~v~~~~~~--~~~~~g~v~~d-~g---------~v~~i~e~~~~~~----- 155 (430)
T PRK14359 93 HERVLILNGDMPLVEKDELEKLLENDADIVMSVFHLA--DPKGYGRVVIE-NG---------QVKKIVEQKDANE----- 155 (430)
T ss_pred CCeEEEEECCccCCCHHHHHHHHhCCCCEEEEEEEcC--CCccCcEEEEc-CC---------eEEEEEECCCCCc-----
Confidence 56899999998432 122333345678888887764 35679998775 44 6899999996431
Q ss_pred ccCCCCcceeeeeeEEecHHHHHHHHHHhcC----CCCcccccccc----cccceeccccccccccCCcCccccCCcchh
Q 001402 284 AILDDGRALLDTGIIAVRGKAWEELVMLSCS----CPPMVSELLKS----GKEMSLYEDLVAAWVPAKHDWLMLRPLGKE 355 (1084)
Q Consensus 284 av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~----~~d~g~d~i~~----~~~~~~y~DF~~~~~~~~~~y~~~~~~~~~ 355 (1084)
.+....++++|+|+|+.+.+.+++..-.. ...+-.|.++. ...+..|. + ...||.+..+.++
T Consensus 156 --~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g~~v~~~~-~-------~~~~w~dI~t~~d 225 (430)
T PRK14359 156 --EELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKGETIKAVF-V-------DEENFMGVNSKFE 225 (430)
T ss_pred --ccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcCCeEEEEE-c-------CCCEEeCCCCHHH
Confidence 00112467999999999998877652111 01111122211 01111110 1 1236666544444
Q ss_pred HHhh---hc---------CCCccccccCCcccccccCcchhc-ccccccccccccccceeeccCCCCceeeeccEEEecc
Q 001402 356 LVSK---LG---------KQRMFSYCAYELLFLHFGTSSEVL-DHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSK 422 (1084)
Q Consensus 356 ~~~a---L~---------~~pi~~l~~p~a~F~h~gt~~e~l-~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~Sv 422 (1084)
|..+ |. ...++ ..|+.-|.+-+. .+. ...+.....+.....+.++.+..+|.| .+++|.+|+
T Consensus 226 l~~a~~~l~~~~~~~~~~~g~~~--~~~~~~~~~~~~--~i~g~~~ig~~~~I~~~~~i~~~~i~~~~~I-~~~~i~~~~ 300 (430)
T PRK14359 226 LAKAEEIMQERIKKNAMKQGVIM--RLPETIYIESGV--EFEGECELEEGVRILGKSKIENSHIKAHSVI-EESIIENSD 300 (430)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEE--ecCCeeEECCCc--EEcCceEECCCCEECCCeEEEeeEECCCCEE-eccEEeCCE
Confidence 4433 10 00001 112222221111 000 011222333322222333344445444 446778888
Q ss_pred ccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 423 IAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 423 L~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++++++|+++++|++|+|+.++.|+.. +|.++.+..
T Consensus 301 ig~~~~i~~~~~i~~~~ig~~~~i~~~-~~~~~~i~~ 336 (430)
T PRK14359 301 VGPLAHIRPKSEIKNTHIGNFVETKNA-KLNGVKAGH 336 (430)
T ss_pred ECCCCEECCCcEEeccEEcCcEEEccc-Eeccccccc
Confidence 888888888888888888888866653 334444433
No 82
>KOG4519 consensus Phosphomevalonate kinase [Lipid transport and metabolism]
Probab=98.62 E-value=9.4e-06 Score=88.74 Aligned_cols=212 Identities=19% Similarity=0.196 Sum_probs=117.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhCC----------CCC--HHH----HHHHHHHHHHhcCC-CCcccchhhhcccceEEEe
Q 001402 855 GSGLGTSSILAAAVVKALLQITDG----------DQS--NEN----VARLVLLLEQLMGT-GGGWQDQIGGLYPGIKFTS 917 (1084)
Q Consensus 855 GsGLGSSSAlavA~l~Al~~l~g~----------~ls--~~e----La~la~~~E~~~gt-~~G~~Dq~a~~~GG~~~~~ 917 (1084)
..||||||+++.+++.++...+|. +++ ..+ |++.|+..-| |. |+|+ |+.+++||-..+.+
T Consensus 152 KTGLGSSAam~T~lv~~ll~sl~~~~~d~~~k~~k~d~s~~~viHnlAQ~aHC~AQ--GKvGSGF-DV~aA~yGS~rYrR 228 (459)
T KOG4519|consen 152 KTGLGSSAAMTTALVAALLHSLGVVDLDDPCKEGKFDCSDLDVIHNLAQTAHCLAQ--GKVGSGF-DVSAAVYGSQRYRR 228 (459)
T ss_pred ccCccchHHHHHHHHHHHHHhhcceecCCCccccccCchHHHHHHHHHHHHHHHhc--CCccCCc-ceehhhccceeeee
Confidence 589999999999999888777753 122 233 3344443333 43 6666 89999999999888
Q ss_pred cCCCc----cc--------------------eeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcC-h
Q 001402 918 SFPGI----PL--------------------RLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD-N 972 (1084)
Q Consensus 918 ~~~g~----~~--------------------~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~-~ 972 (1084)
+.|.. |+ ...+....+| ..+++++.+-....+|..++++| +.|...+ +
T Consensus 229 F~P~lis~lp~~i~~~~~~~el~~~V~k~~W~~~~~~f~LP------~~~~L~mGd~~gGSsTp~mV~kV-k~Wq~s~~p 301 (459)
T KOG4519|consen 229 FSPELISFLPQVIVTGLPLNELIGTVLKGKWDNKRTEFSLP------PLMNLFMGDGSGGSSTPSMVGKV-KKWQMSDPP 301 (459)
T ss_pred CCHHHHHHHHHHHhccChhHHHHHHhhhhhcccccccccCC------ceeeeeeecCCCCCCcHHHHHHH-HHHhhcCCh
Confidence 64321 00 0000111222 24566776544455677777775 3444322 2
Q ss_pred HHHHHHHHHHHH---------------------HHHHHHHHhhcC--------HHHHHHHHHHHHHHHhhcCC----CCC
Q 001402 973 LLISSIKRLTEL---------------------AKNGRDALMNCD--------VDELGKIMLEAWRLHQELDP----HCS 1019 (1084)
Q Consensus 973 ~~~~~l~~l~~~---------------------a~~~~~AL~~gD--------~~~lg~lm~~s~~~~~~l~~----~vs 1019 (1084)
+...+...+.+. ..+.++.|...+ +.++.+.|..-..+++.+.. .+.
T Consensus 302 e~~k~~~~lddansr~~~~l~kl~~l~~~h~d~~~~v~eSl~~~~~~~~~~~e~~E~r~a~~~IRr~~r~it~ea~vdIE 381 (459)
T KOG4519|consen 302 EARKNWQNLDDANSRLETKLNKLSKLAKDHWDVYLRVIESLSVLTINEAIIKELLEAREAMLRIRRLMRQITEEASVDIE 381 (459)
T ss_pred hHhhhhcchhhHHHHHHhhhhhhhHhhhhchhHHHHHHhhcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 211111111111 112223332221 23334444444444444432 256
Q ss_pred cHHHHHHHHHHcC--CCCeEEEcCCCccceeEEEEcCh-hhHHHHHHHHHhcCCCCcEEEEee
Q 001402 1020 NEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDA-ESATELRRMLEKDSNFNSEVYNWN 1079 (1084)
Q Consensus 1020 ~p~ld~li~~a~~--ga~GaklSGAGgGG~viaL~~~~-~~ae~i~~~L~~~~~f~v~v~~~~ 1079 (1084)
++.-..|++-+.. |++++-+.||||=+.+++++..+ +..+++.+.|+.. +|...+++
T Consensus 382 P~~QT~lLD~~~sl~GVl~~gvPGAGGfDAif~it~~dvd~~~~~~~~w~~~---~V~~ldV~ 441 (459)
T KOG4519|consen 382 PESQTQLLDSTMSLEGVLLAGVPGAGGFDAIFAITLGDVDSGTKLTQAWSSH---NVLALDVR 441 (459)
T ss_pred chhhhhHhhhhhcccceEEecccCCCCcceEEEEeecchhHHHHHHhhhccc---CeeEEeee
Confidence 6666777777664 99999999999988999998753 3345566666643 55555544
No 83
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.60 E-value=6.5e-07 Score=107.56 Aligned_cols=105 Identities=18% Similarity=0.247 Sum_probs=70.7
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|++++++..+-.+.. ..+.++|+.||+ +...++..+. ..++++|++..+++ ....+|++..|++
T Consensus 76 ~g~~~al~~a~~~l~~-------~~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~~~~--~~~~~g~v~~d~~ 146 (458)
T PRK14354 76 LGTGHAVMQAEEFLAD-------KEGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTAIAE--NPTGYGRIIRNEN 146 (458)
T ss_pred CCHHHHHHHHHHHhcc-------cCCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEEEcC--CCCCceEEEEcCC
Confidence 4667776655544321 135799999997 3445555553 35678888877654 4467999888877
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+ +|..|.+||...+ .++...++.+|+|+|+.+.+.+.+..
T Consensus 147 ~---------~V~~~~ek~~~~~-------~~~~~~~~~~Giy~f~~~~l~~~l~~ 186 (458)
T PRK14354 147 G---------EVEKIVEQKDATE-------EEKQIKEINTGTYCFDNKALFEALKK 186 (458)
T ss_pred C---------CEEEEEECCCCCh-------HHhcCcEEEEEEEEEEHHHHHHHHHH
Confidence 6 7899999986321 01223478999999999877776653
No 84
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=98.53 E-value=4.3e-07 Score=100.65 Aligned_cols=103 Identities=21% Similarity=0.295 Sum_probs=80.2
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEEC-CC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAA-KD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d-~~ 255 (1084)
+.|++.+++...-.+... .++.++|+.||+++.+|+..|. ..++++|+++.+++.+..+.|||+.+| ++
T Consensus 84 ~~Gt~~al~~a~~~l~~~------~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~~~~~~~yg~v~~d~~~ 157 (257)
T cd06428 84 PLGTAGGLYHFRDQILAG------NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEASREQASNYGCIVEDPST 157 (257)
T ss_pred cCCcHHHHHHHHHHhhcc------CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEccccccccccEEEEeCCC
Confidence 457888876655444221 2457999999999999988885 467899999999888889999999998 55
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
+ +|.+|.|||..+. ..++.+|+|+|+.+.+..+.
T Consensus 158 g---------~v~~~~Ekp~~~~-----------~~~~~~Giyi~~~~~~~~i~ 191 (257)
T cd06428 158 G---------EVLHYVEKPETFV-----------SDLINCGVYLFSPEIFDTIK 191 (257)
T ss_pred C---------eEEEEEeCCCCcc-----------cceEEEEEEEECHHHHHHHh
Confidence 6 7999999997531 23789999999999875443
No 85
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism]
Probab=98.48 E-value=3.6e-07 Score=96.85 Aligned_cols=203 Identities=20% Similarity=0.218 Sum_probs=126.0
Q ss_pred CEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc--------CC----------------
Q 001402 843 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM--------GT---------------- 898 (1084)
Q Consensus 843 G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~--------gt---------------- 898 (1084)
+-++++.+-||.|.|+|||++..++.+...+....+.+++......++.+|.+. |.
T Consensus 94 ~Tk~hvtNPiplgrGigssgta~~aGv~l~ne~a~LGlsk~~mldy~lmierhpdn~~a~mmGgf~GSflr~l~e~E~~~ 173 (355)
T KOG1537|consen 94 TTKKHVTNPIPLGRGIGSSGTAKMAGVRLVNESADLGLSKGSMLDYSLMIERHPDNAVAEMMGGFLGSFLRALLESEAKV 173 (355)
T ss_pred ceeeeecCCccccccccchhhhhhhhheecchHhhcCCccccchhHHHHHhhChHHHHHHHHhhHHHHHHHHhCHhhhhh
Confidence 457788889999999999999999999999999988888777666666665432 11
Q ss_pred -CCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCC---cchHHHHHHHHHHHHhhcChHH
Q 001402 899 -GGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 899 -~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~---tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
+-..+|......||+..+...+...+. .++.++. +.+..++++.+.. |.+++.+|+.-+... +.
T Consensus 174 ~~~~ad~ilp~~~gg~~li~~lpP~dlg---~~~r~pw----~~~lk~i~viP~Fel~T~k~R~vLPt~yp~~-----d~ 241 (355)
T KOG1537|consen 174 SGYHADNILPAIMGGFVLIRNLPPLDLG---KPLRFPW----DKDLKFILVIPDFELPTKKMRAVLPTEYPMV-----DH 241 (355)
T ss_pred cCCCHHHhcccccCCeeeecCCCccccc---ccccCCC----CccceEEEEeccccccchhhhhhcCccccce-----ee
Confidence 122456666677777666654432221 2332221 2345677776654 555566666532210 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-CHHHHH-HHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC----CCCeEEEcCCCcccee
Q 001402 975 ISSIKRLTELAKNGRDALMNC-DVDELG-KIMLEAWRLHQELDPHCSNEFVDRLFAFADP----YCCGYKLVGAGGGGFA 1048 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~g-D~~~lg-~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~----ga~GaklSGAGgGG~v 1048 (1084)
+-+++++. .+..|+.++ |-..|+ .+|.+-.++ .+- .-..|.++++.+.+.+ |.+|..+||||+ ++
T Consensus 242 V~NlqrlA----~LttAl~~~p~n~~L~y~~m~Dkvhq--PyR-a~LIPGl~~il~~~~p~t~pGl~GiclSGAGP--T~ 312 (355)
T KOG1537|consen 242 VWNLQRLA----ALTTALLEGPDNVMLGYALMSDKVHQ--PYR-APLIPGLEAILKAALPATYPGLFGICLSGAGP--TA 312 (355)
T ss_pred eecHHHHH----HHHHHHhcCCCchhhhhhhhhccccC--ccc-cccCccHHHHHHhhCcccCCceeeEEecCCCC--ee
Confidence 22344432 356677777 544444 455544221 111 1235888888888764 789999999999 99
Q ss_pred EEEEcChhhHHHHHHHHHhc
Q 001402 1049 LLLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1049 iaL~~~~~~ae~i~~~L~~~ 1068 (1084)
+++... .-++|.+++-+.
T Consensus 313 lAlate--nf~eI~~~mv~~ 330 (355)
T KOG1537|consen 313 LALATE--NFQEIGEKMVEA 330 (355)
T ss_pred EEEecC--cHHHHHHHHHHH
Confidence 999873 455555554443
No 86
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism]
Probab=98.44 E-value=2.3e-05 Score=85.49 Aligned_cols=202 Identities=22% Similarity=0.265 Sum_probs=115.2
Q ss_pred CEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEecC---
Q 001402 843 GLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSF--- 919 (1084)
Q Consensus 843 G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~--- 919 (1084)
.+.|...+|.|..+||.||||=-+|++.||+++|+++.++++|.++|.+ |+|+ ..-++|||++..+..
T Consensus 105 ~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~-----GSGS----ACRSl~GG~V~W~mG~~~ 175 (395)
T KOG2833|consen 105 KLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQ-----GSGS----ACRSLYGGFVAWEMGELD 175 (395)
T ss_pred eEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhc-----cCch----hhhhhhcceeEeeccccc
Confidence 4566667899999999999999999999999999999999999998863 2222 445899999887532
Q ss_pred CCc-cceeEEEEc-cCChhhhhccCcEEEEEEcCC---cchHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHHHHHHHHh
Q 001402 920 PGI-PLRLQVIPL-LASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALM 993 (1084)
Q Consensus 920 ~g~-~~~~~v~pl-~~~~~~~~~l~~~lvlv~tg~---tr~T~~iL~~v~~~~~~~~~~~~~~l~~-l~~~a~~~~~AL~ 993 (1084)
+|. .+.+.+.|- .+++ + ..+++|.+.. +.+|..+.+.+-...+ +...+++ +-+...+|.+|+.
T Consensus 176 DGsDsvAvq~~p~~~W~e-----l-~ililVvs~~~K~t~ST~GM~~sveTS~L-----~qhRi~~vVP~Ri~~m~eaI~ 244 (395)
T KOG2833|consen 176 DGSDSVAVQIAPSSHWPE-----L-RILILVVSDAKKKTGSTEGMRRSVETSQL-----LQHRIESVVPQRIQQMREAIR 244 (395)
T ss_pred CCCceeEEEeccccCCCc-----e-EEEEEEeccccccccccHHHHHHHHHhHH-----HHHHHHhhhHHHHHHHHHHHH
Confidence 231 122222221 1221 2 2344444433 3344444333321111 0011111 1122467899999
Q ss_pred hcCHHHHHHH-HHHHHH---HHhhcCCCC--CcHHHHHHHHHHcC-----C-CCeEEEcCCCccceeEEEEcChhhHHHH
Q 001402 994 NCDVDELGKI-MLEAWR---LHQELDPHC--SNEFVDRLFAFADP-----Y-CCGYKLVGAGGGGFALLLAKDAESATEL 1061 (1084)
Q Consensus 994 ~gD~~~lg~l-m~~s~~---~~~~l~~~v--s~p~ld~li~~a~~-----g-a~GaklSGAGgGG~viaL~~~~~~ae~i 1061 (1084)
+.||+.|+++ |.++-+ .+-+-+|.+ .+..-.++++.+.+ | -..+----||+--|+|.+-+ .+.++
T Consensus 245 ~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e---~~~~~ 321 (395)
T KOG2833|consen 245 ERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEE---NVSQL 321 (395)
T ss_pred hcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhh---hHHHH
Confidence 9999999998 554433 222222211 11222334444432 2 23455568999766666643 33344
Q ss_pred HHHHHh
Q 001402 1062 RRMLEK 1067 (1084)
Q Consensus 1062 ~~~L~~ 1067 (1084)
.+.+.+
T Consensus 322 l~~~~~ 327 (395)
T KOG2833|consen 322 LAAVLK 327 (395)
T ss_pred HHHHHH
Confidence 444444
No 87
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=98.35 E-value=2.6e-07 Score=101.30 Aligned_cols=148 Identities=14% Similarity=0.215 Sum_probs=99.7
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|++++++.....+.... .++.++|+.||+|+.+|+..|. ..++++++.....+.+..++||++.+|+++
T Consensus 84 ~Gta~al~~a~~~i~~~~-----~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~v~~d~~~- 157 (248)
T PF00483_consen 84 LGTAGALLQALDFIEEED-----DDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPVEDPSRYGVVEVDEDG- 157 (248)
T ss_dssp SCHHHHHHHTHHHHTTSE-----E-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEESSGGGGSEEEEEETTS-
T ss_pred cchhHHHHHHHHHhhhcc-----ccceEEEEeccccccchhhhHHHhhhccccccccccccccccccccceeeeeccce-
Confidence 589999888777766631 1457999999999999998885 345544555556667789999999999877
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHh---cCCCCccccccccc-ccce-e-
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLS---CSCPPMVSELLKSG-KEMS-L- 331 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~---~~~~d~g~d~i~~~-~~~~-~- 331 (1084)
+|.+|.|||..+.. ..++++|+|+|+.+++..++... ....++..|.++.. .+.. .
T Consensus 158 --------~V~~~~EKP~~~~~----------~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~ 219 (248)
T PF00483_consen 158 --------RVIRIVEKPDNPNA----------SNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVY 219 (248)
T ss_dssp --------EEEEEEESCSSHSH----------SSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEE
T ss_pred --------eEEEEeccCccccc----------ceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceE
Confidence 89999999997531 45789999999999988886511 11223333444331 1111 1
Q ss_pred ccccccccccCCcCccccCCcchhHHhh
Q 001402 332 YEDLVAAWVPAKHDWLMLRPLGKELVSK 359 (1084)
Q Consensus 332 y~DF~~~~~~~~~~y~~~~~~~~~~~~a 359 (1084)
++.+.. .+||.|.++.++|++|
T Consensus 220 ~~~~~~------~~~w~dig~~~~~~~a 241 (248)
T PF00483_consen 220 AFIFEG------NAYWIDIGTPEDYLEA 241 (248)
T ss_dssp EEEHSS------EE-EEETSSHHHHHHH
T ss_pred EEEecC------CeEEEECCCHHHHHHH
Confidence 122221 1178888777788775
No 88
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=7.2e-07 Score=99.85 Aligned_cols=105 Identities=21% Similarity=0.181 Sum_probs=81.2
Q ss_pred ccCCccccc-cc--CcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcE
Q 001402 369 CAYELLFLH-FG--TSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQ 445 (1084)
Q Consensus 369 ~~p~a~F~h-~g--t~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~ 445 (1084)
..|..+|.+ ++ +..-..++++.+.++++-+..++.|....+|.|.+.+.|.+|+|+++|+||+|+.||+|+|+.+++
T Consensus 314 l~~e~~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~gA~ 393 (433)
T KOG1462|consen 314 LCSEAKFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMGAQ 393 (433)
T ss_pred hccccccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceecccce
Confidence 345566665 11 122224567778888876666777788888999999999999999999999999999999999999
Q ss_pred ECCCCeEeccccCCCCCCCCCCCcceEeC-CCcEeeeee
Q 001402 446 IGSLSIVVGTNFPEEAGSTAEDSFRFMLP-DRHCLWEVP 483 (1084)
Q Consensus 446 IG~~~iIsg~~i~~~~~~~~~~~~~~~iP-~g~~i~~v~ 483 (1084)
||++|.|++|+|..+ .+++ .|.+-+++-
T Consensus 394 Ig~gs~L~nC~Ig~~----------yvVeak~~~~~ev~ 422 (433)
T KOG1462|consen 394 IGSGSKLKNCIIGPG----------YVVEAKGKHGGEVL 422 (433)
T ss_pred ecCCCeeeeeEecCC----------cEEcccccccccEe
Confidence 999999999999874 6666 454444443
No 89
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=98.31 E-value=2.4e-06 Score=92.63 Aligned_cols=224 Identities=19% Similarity=0.196 Sum_probs=140.2
Q ss_pred cchhhhcCCCCCCcCCCCCCCceeeeccCC---c------------------------------CC--------------
Q 001402 147 HILLVHAGGDSKRVPWANPMGKVFLPLPYL---A------------------------------AD-------------- 179 (1084)
Q Consensus 147 ~iLllHaGg~S~R~P~~s~~GK~ft~lP~~---~------------------------------~~-------------- 179 (1084)
|=+|||+|-.+|+-|......|-+.|+--. . ++
T Consensus 2 KgiILAgG~GTRL~PlT~~~~KqLlpV~~KPmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~llGdgs~~gv~itY~~Q~ 81 (286)
T COG1209 2 KGVILAGGSGTRLRPLTRVVPKQLLPVYDKPMIYYPLETLMLAGIRDILIVVGPEDKPTFKELLGDGSDFGVDITYAVQP 81 (286)
T ss_pred CcEEecCcCccccccccccCCcccceecCcchhHhHHHHHHHcCCceEEEEecCCchhhhhhhhcCccccCcceEEEecC
Confidence 458899999999999988888888775310 0 00
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|+|=++ ...+..+|. ..+-+++.-||-|+.-+.++.. ..+.+.++++-+|+ ..++|||..+|++
T Consensus 82 ~p~GlA~-----Av~~a~~fv----~~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~--dP~rfGV~e~d~~ 150 (286)
T COG1209 82 EPDGLAH-----AVLIAEDFV----GDDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD--DPSRYGVVEFDED 150 (286)
T ss_pred CCCcHHH-----HHHHHHhhc----CCCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC--CcccceEEEEcCC
Confidence 1112222 233444443 3356777889999888887774 45678889999887 8999999999998
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccc-cccceeccc
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKS-GKEMSLYED 334 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~-~~~~~~y~D 334 (1084)
+ +|....|||..| ..-++.+|+|+|+..+.+..-. +-|+ ..|+.. .|
T Consensus 151 ~---------~v~~l~EKP~~P-----------~SNlAvtGlY~~d~~Vf~~~~~-----------ikPS~RGElEI-Td 198 (286)
T COG1209 151 G---------KVIGLEEKPKEP-----------KSNLAVTGLYFYDPSVFEAIKQ-----------IKPSARGELEI-TD 198 (286)
T ss_pred C---------cEEEeEECCCCC-----------CCceeEEEEEEeChHHHHHHHc-----------CCCCCCCceEe-hH
Confidence 8 799999999985 3457799999999987754322 1122 111111 11
Q ss_pred ccccc------ccC-C-cCccccCCcchhHHhhhcCCCccccccCCcccccccCcchhcccccccccccccccceeeccC
Q 001402 335 LVAAW------VPA-K-HDWLMLRPLGKELVSKLGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPA 406 (1084)
Q Consensus 335 F~~~~------~~~-~-~~y~~~~~~~~~~~~aL~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~ 406 (1084)
-.+.+ ... . ..||-|+++-+++.+|. .|++. ..++.++.
T Consensus 199 ~i~~~i~~G~~~~~~~~~G~WlDtGt~~slleA~-------------~~i~~-------------~~~~~G~~------- 245 (286)
T COG1209 199 AIDLYIEKGYLVVAILIRGWWLDTGTPESLLEAN-------------NFVRT-------------VSKRQGFK------- 245 (286)
T ss_pred HHHHHHHcCcEEEEEEccceEEecCChhhHHHHH-------------HHHHH-------------HHhhcCCE-------
Confidence 11111 111 0 12899988778887631 23321 00111111
Q ss_pred CCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCC
Q 001402 407 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLS 450 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~ 450 (1084)
.+..+..+.||.|...+.++.++.|++|.+++-..++.++
T Consensus 246 ----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~G~y~~~~~~~ 285 (286)
T COG1209 246 ----IACPEEIAWNGWIDGPGLIGLASQLEKSGYGQYLLELLRA 285 (286)
T ss_pred ----EeChhHEEEecEEechHhhccccchhhcCcchhhhhhhcC
Confidence 1112234557777777778888888888777777766554
No 90
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=6.6e-06 Score=97.28 Aligned_cols=55 Identities=18% Similarity=0.174 Sum_probs=45.5
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
....|+.|..|+.|.||||+.+|+||++++|.+|.|..||+||.||+|..++|-.
T Consensus 335 ~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d 389 (673)
T KOG1461|consen 335 VIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICD 389 (673)
T ss_pred EecccccccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeec
Confidence 3444667888888888888888888888888888888888888888888888755
No 91
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=98.21 E-value=1.6e-05 Score=90.72 Aligned_cols=243 Identities=17% Similarity=0.193 Sum_probs=129.7
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccc---cC----cCCCcEEEEEEEcChhccccceEEEE
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDAST---MI----LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~---~~----~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.+.|+.+|+++.+-.+..+. ...|||++||+= +.+... +. ..++++|+++.. ++.-+.||-++.
T Consensus 76 eqlGTgHAV~~a~~~l~~~~------~g~vLVl~GD~P-Lit~~TL~~L~~~~~~~~~~~tvLt~~--~~dP~GYGRIvr 146 (460)
T COG1207 76 EQLGTGHAVLQALPALADDY------DGDVLVLYGDVP-LITAETLEELLAAHPAHGAAATVLTAE--LDDPTGYGRIVR 146 (460)
T ss_pred ccCChHHHHHhhhhhhhcCC------CCcEEEEeCCcc-cCCHHHHHHHHHhhhhcCCceEEEEEE--cCCCCCcceEEE
Confidence 34689999888877774432 447999999982 222211 11 246888888764 455678999999
Q ss_pred CCCCCccccccccccceeEecC-ChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCC----CCcccccccc--
Q 001402 253 AKDGILNENYALSLVDDLLQKP-NVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSC----PPMVSELLKS-- 325 (1084)
Q Consensus 253 d~~~~~~~~~~~~~v~~fleKP-s~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~----~d~g~d~i~~-- 325 (1084)
++++ .|..+.|-- ..++-++ ---..+|+|+|+.+.|.++|..-..+ .++--|++..
T Consensus 147 ~~~g---------~V~~IVE~KDA~~eek~--------I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~ 209 (460)
T COG1207 147 DGNG---------EVTAIVEEKDASEEEKQ--------IKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIAR 209 (460)
T ss_pred cCCC---------cEEEEEEcCCCCHHHhc--------CcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHH
Confidence 9887 677776544 3332221 12458999999999999999754221 1111233221
Q ss_pred --cccceec--cccccccccCC-cCccccCCcchhHHhh-----hcCCCccccccCCcccccccCcchhccccccccccc
Q 001402 326 --GKEMSLY--EDLVAAWVPAK-HDWLMLRPLGKELVSK-----LGKQRMFSYCAYELLFLHFGTSSEVLDHLSGDVSGL 395 (1084)
Q Consensus 326 --~~~~~~y--~DF~~~~~~~~-~~y~~~~~~~~~~~~a-----L~~~pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l 395 (1084)
...+.+| .||...+++.+ .+. ......|+. +...-. ++ ..|+.|+--++..---+-.+.-...+
T Consensus 210 ~~g~~V~a~~~~d~~E~~GVN~R~qL----a~~e~~~q~r~~~~~m~~GV-tl-~dP~t~~i~~dv~ig~DvvI~p~v~l 283 (460)
T COG1207 210 NEGEKVRAVHVDDEEEVLGVNDRVQL----AEAERIMQRRIAEKLMLAGV-TL-IDPATTYIRGDVEIGRDVVIEPNVIL 283 (460)
T ss_pred hCCCeEEEEecCchHHhcCcCcHHHH----HHHHHHHHHHHHHHHHHcCc-EE-eCCCeEEEcCcEEECCceEEecCcEE
Confidence 2233444 23443333210 000 000112221 111100 11 23444442223111111111100011
Q ss_pred ccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 396 VGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 396 ~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.+ +..+..+|.|..++.|.+|.|++++.|.++|+||+|.+++++.||.-+.|+ |+.+..
T Consensus 284 ~G-----~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~ 343 (460)
T COG1207 284 EG-----NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGA 343 (460)
T ss_pred ee-----eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccC
Confidence 11 112333556667777888888888888888888888888888888777776 444433
No 92
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=98.01 E-value=2.3e-05 Score=85.48 Aligned_cols=138 Identities=17% Similarity=0.278 Sum_probs=91.9
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECC-C
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAK-D 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~-~ 255 (1084)
+.|++.+++..+-.+.. ..+-++|+.||+++.+|+..|. ..++++|++..+.+ ..+.+|++.+|+ +
T Consensus 83 ~~G~~~al~~a~~~~~~-------~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~~~ 153 (233)
T cd06425 83 PLGTAGPLALARDLLGD-------DDEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVE--DPSKYGVVVHDENT 153 (233)
T ss_pred CCccHHHHHHHHHHhcc-------CCCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcC--CccccCeEEEcCCC
Confidence 45788877665554422 1235899999999999987774 46788999988775 357899999997 5
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHhcCCCCcccccccc---cccceec
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSCSCPPMVSELLKS---GKEMSLY 332 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~~~~d~g~d~i~~---~~~~~~y 332 (1084)
+ +|.+|.+||..+. ..++++|+|+|+.++++.+.. ...+...|+++. ..++..|
T Consensus 154 ~---------~v~~~~ekp~~~~-----------~~~~~~Giyi~~~~~l~~l~~---~~~~~~~~~~~~l~~~~~v~~~ 210 (233)
T cd06425 154 G---------RIERFVEKPKVFV-----------GNKINAGIYILNPSVLDRIPL---RPTSIEKEIFPKMASEGQLYAY 210 (233)
T ss_pred C---------EEEEEEECCCCCC-----------CCEEEEEEEEECHHHHHhccc---CcccchhhhHHHHHhcCCEEEE
Confidence 5 7999999997631 236799999999998754432 112223344433 1122222
Q ss_pred cccccccccCCcCccccCCcchhHHhh
Q 001402 333 EDLVAAWVPAKHDWLMLRPLGKELVSK 359 (1084)
Q Consensus 333 ~DF~~~~~~~~~~y~~~~~~~~~~~~a 359 (1084)
.+ ..||.|.++..+|+++
T Consensus 211 -~~--------~g~w~digt~~~~~~a 228 (233)
T cd06425 211 -EL--------PGFWMDIGQPKDFLKG 228 (233)
T ss_pred -ee--------CCEEEcCCCHHHHHHH
Confidence 12 3477887766777764
No 93
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.00 E-value=1.5e-05 Score=72.27 Aligned_cols=63 Identities=13% Similarity=0.140 Sum_probs=47.5
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCc
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRH 477 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~ 477 (1084)
.+..+|.|..++.|.+|+|++++.|++++.|++|+|++++.||.++.|.++++.++ ..|++++
T Consensus 18 ~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~~~i~~~~~v~~~ii~~~----------~~i~~~~ 80 (81)
T cd04652 18 VIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNGAVIGEKCKLKDCLVGSG----------YRVEAGT 80 (81)
T ss_pred EECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCCCEECCCCEEccCEECCC----------cEeCCCC
Confidence 34445566677778888888888888888888888888888888888888887663 6666653
No 94
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.93 E-value=3.5e-05 Score=73.54 Aligned_cols=69 Identities=20% Similarity=0.283 Sum_probs=58.3
Q ss_pred eeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEee
Q 001402 401 LCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLW 480 (1084)
Q Consensus 401 ~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~ 480 (1084)
+.++.+..+|.|. ++.|.+|+|+++++|++++.|++|+|++++.||.+|.|.++++.++ +.|+++..+.
T Consensus 10 i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~----------~~Ig~~~~v~ 78 (104)
T cd04651 10 VKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKN----------VVIPDGVVIG 78 (104)
T ss_pred EEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCC----------CEECCCCEEC
Confidence 3444555676666 8899999999999999999999999999999999999999999773 8888887653
No 95
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=97.90 E-value=2.3e-05 Score=86.85 Aligned_cols=103 Identities=17% Similarity=0.139 Sum_probs=74.3
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccccc---CccccC----cCCCcEEEEEEEcChhccccceEEEE
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCF---DASTMI----LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~m---d~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.+.|++.+++..+-.+ . .+.++|+.||+++.. |+..|. ..++++ ++..+++.+..++|||+.+
T Consensus 102 ~~~G~~~al~~~~~~~-~--------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~i-i~~~~~~~~~~~~~g~v~~ 171 (260)
T TIGR01099 102 EQKGLGHAVLCAEPFV-G--------DEPFAVILGDDIVVSEEPALKQMIDLYEKYGCSI-IAVEEVPKEEVSKYGVIDG 171 (260)
T ss_pred CCCCHHHHHHHHHHhh-C--------CCCEEEEeccceecCCcHHHHHHHHHHHHhCCCE-EEEEECChhhcccCceEEe
Confidence 3467888876665543 1 346999999999876 577774 356775 5566778788899999998
Q ss_pred CC---C-CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 253 AK---D-GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 253 d~---~-~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
|. + + +|++|.|||+.++ +...++.+|+|+|+.+.+..+..
T Consensus 172 d~~~~~~~---------~v~~~~Ekp~~~~---------~~~~~~~~Giyi~~~~~~~~l~~ 215 (260)
T TIGR01099 172 EGVEEGLY---------EIKDMVEKPKPEE---------APSNLAIVGRYVLTPDIFDLLEE 215 (260)
T ss_pred ccccCCce---------eEEEEEECCCCCC---------CCCceEEEEEEECCHHHHHHHHh
Confidence 73 2 3 6999999996432 12346899999999987666543
No 96
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=97.89 E-value=3.8e-05 Score=82.24 Aligned_cols=97 Identities=21% Similarity=0.303 Sum_probs=77.6
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+.++++..+..+ . .+.++|+.||+++..|+.++. .+++++|++..+.+ ..+++|++.+|+++
T Consensus 81 ~g~~~al~~~~~~~-~--------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~~- 148 (217)
T cd04181 81 LGTAGAVRNAEDFL-G--------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVE--DPSRYGVVELDDDG- 148 (217)
T ss_pred CccHHHHHHhhhhc-C--------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcC--CCCcceEEEEcCCC-
Confidence 57888877665544 1 458999999999999988874 46788999888777 78899999999876
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|.+|.+||..+. ..+.++|+|+|+.+.+ +++.
T Consensus 149 --------~v~~~~ek~~~~~-----------~~~~~~Giy~~~~~~~-~~l~ 181 (217)
T cd04181 149 --------RVTRFVEKPTLPE-----------SNLANAGIYIFEPEIL-DYIP 181 (217)
T ss_pred --------cEEEEEECCCCCC-----------CCEEEEEEEEECHHHH-Hhhh
Confidence 7999999997642 3467999999999876 5554
No 97
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=97.80 E-value=5.8e-05 Score=83.71 Aligned_cols=94 Identities=14% Similarity=0.146 Sum_probs=70.1
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
+.|+..+++..+-.+. .+.++|+.||+|+.+|+.+|. ..++++|+++.+ ..+.|||+.+|+ +
T Consensus 102 ~~gt~~al~~~~~~i~---------~e~flv~~gD~i~~~dl~~~~~~h~~~~~d~tl~~~~----~~~~yG~v~~d~-~ 167 (254)
T TIGR02623 102 STQTGGRLKRVREYLD---------DEAFCFTYGDGVADIDIKALIAFHRKHGKKATVTAVQ----PPGRFGALDLEG-E 167 (254)
T ss_pred cCCcHHHHHHHHHhcC---------CCeEEEEeCCeEecCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECC-C
Confidence 3577887655443221 346899999999999999985 457888887653 457899999984 4
Q ss_pred CccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 257 ILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|++|.+||..+ ..++.+|+|+|+.+.+ +++.
T Consensus 168 ---------~V~~~~Ekp~~~------------~~~i~~Giyi~~~~il-~~l~ 199 (254)
T TIGR02623 168 ---------QVTSFQEKPLGD------------GGWINGGFFVLNPSVL-DLID 199 (254)
T ss_pred ---------eEEEEEeCCCCC------------CCeEEEEEEEEcHHHH-hhcc
Confidence 689999999541 2368999999999977 5554
No 98
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=97.75 E-value=3.5e-05 Score=91.37 Aligned_cols=76 Identities=17% Similarity=0.214 Sum_probs=65.3
Q ss_pred ccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeE-eccccCCCCCCCCCCCcceE
Q 001402 394 GLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV-VGTNFPEEAGSTAEDSFRFM 472 (1084)
Q Consensus 394 ~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iI-sg~~i~~~~~~~~~~~~~~~ 472 (1084)
.++....+.++.+..+|+|.+...|.+|.|..+|+||+||.|++|+|.++|+|++||+| -|+++.. .++
T Consensus 341 ~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~v~Igdnc~I~~aii~d~v~i~~~~~l~~g~vl~~----------~VV 410 (673)
T KOG1461|consen 341 KIGSGSKISNSVIGANCRIGSNVRIKNSFIWNNVTIGDNCRIDHAIICDDVKIGEGAILKPGSVLGF----------GVV 410 (673)
T ss_pred cccCCCeeecceecCCCEecCceEEeeeeeecCcEECCCceEeeeEeecCcEeCCCcccCCCcEEee----------eeE
Confidence 45555567788888899999999999999999999999999999999999999999999 5888755 477
Q ss_pred eCCCcEe
Q 001402 473 LPDRHCL 479 (1084)
Q Consensus 473 iP~g~~i 479 (1084)
+|++..+
T Consensus 411 v~~~~~l 417 (673)
T KOG1461|consen 411 VGRNFVL 417 (673)
T ss_pred eCCCccc
Confidence 7777643
No 99
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.59 E-value=0.00019 Score=64.48 Aligned_cols=51 Identities=25% Similarity=0.400 Sum_probs=41.6
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++.|..++.|.+|+|+++|+|++++.|++|+|++++.||.+|.|.++++..
T Consensus 5 ~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~ 55 (79)
T cd03356 5 STVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGD 55 (79)
T ss_pred CcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECC
Confidence 345666777888888888888888888888888888888888888887765
No 100
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=97.59 E-value=0.00022 Score=80.71 Aligned_cols=96 Identities=18% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcc-cccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVL-PCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I-~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|.+.+++...-.+. +.+ ++|+.||++ +.+|++.+. ..++++|+++.+++ ..++|||+..|++
T Consensus 86 ~~Gta~Al~~a~~~i~--------~~~-~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~~~v~--~p~~yGvv~~d~~ 154 (292)
T PRK15480 86 PDGLAQAFIIGEEFIG--------GDD-CALVLGDNIFYGHDLPKLMEAAVNKESGATVFAYHVN--DPERYGVVEFDQN 154 (292)
T ss_pred CCCHHHHHHHHHHHhC--------CCC-EEEEECCeeeeccCHHHHHHHHHhCCCCeEEEEEEcC--CcccCcEEEECCC
Confidence 4688888665443331 223 455568865 578888774 35678999988874 5678999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
+ +|++|.|||..+ ...++.+|+|+|+.++++.
T Consensus 155 g---------~v~~i~EKP~~p-----------~s~~a~~GiY~~~~~v~~~ 186 (292)
T PRK15480 155 G---------TAISLEEKPLQP-----------KSNYAVTGLYFYDNDVVEM 186 (292)
T ss_pred C---------cEEEEEECCCCC-----------CCCEEEEEEEEEChHHHHH
Confidence 7 789999999753 2347799999999986543
No 101
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=7.5e-05 Score=85.40 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=60.0
Q ss_pred ccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecc
Q 001402 386 DHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 386 ~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~ 455 (1084)
+||++++|-+.+ ++.+|..+.++.|..++.|.+|||.++|.||+||.|++++|..||.||+|.+|.+-
T Consensus 296 nSLv~~GciI~G--~V~nSVL~~~v~I~~gs~i~~svim~~~~IG~~~~l~~aIIDk~v~I~~g~~i~~~ 363 (393)
T COG0448 296 NSLVAGGCIISG--TVENSVLFRGVRIGKGSVIENSVIMPDVEIGEGAVLRRAIIDKNVVIGEGVVIGGD 363 (393)
T ss_pred eeeeeCCeEEEe--EEEeeEEecCeEECCCCEEEeeEEeCCcEECCCCEEEEEEeCCCcEeCCCcEEcCC
Confidence 578888887755 57888888888999999999999999999999999999999999999999999765
No 102
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=97.55 E-value=0.00021 Score=64.72 Aligned_cols=61 Identities=13% Similarity=0.150 Sum_probs=52.9
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
++.|..++.|.+|+|+++|.|++++.|++|+|++++.||.+|.|.++++.. ++.|.++..+
T Consensus 5 ~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~----------~~~i~~~~~v 65 (81)
T cd04652 5 NTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGN----------GAVIGEKCKL 65 (81)
T ss_pred CCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeC----------CCEECCCCEE
Confidence 456777788899999999999999999999999999999999999998866 3777777643
No 103
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=97.54 E-value=0.00022 Score=80.52 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=70.2
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcc-cccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVL-PCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I-~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|++++++...-.+. +.+ ++|+.||++ +..|+..|. ..++++|+++.+++ ..++|||+..|++
T Consensus 82 ~~Gta~al~~a~~~l~--------~~~-~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~--~p~~yGvv~~d~~ 150 (286)
T TIGR01207 82 PDGLAQAFIIGEDFIG--------GDP-SALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS--DPERYGVVEFDSN 150 (286)
T ss_pred CCCHHHHHHHHHHHhC--------CCC-EEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc--CHHHCceEEECCC
Confidence 4688888765554432 123 444568875 567777763 35678999998876 4578999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+ +|.+|.|||..++ .-++.+|+|+|+.+++ +.+.
T Consensus 151 g---------~V~~i~EKp~~~~-----------s~~~~~GiYi~~~~i~-~~l~ 184 (286)
T TIGR01207 151 G---------RAISIEEKPAQPK-----------SNYAVTGLYFYDNRVV-EIAR 184 (286)
T ss_pred C---------eEEEEEECCCCCC-----------CCEEEEEEEEEchHHH-HHHh
Confidence 6 7999999997542 2368999999999874 4443
No 104
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.51 E-value=0.00028 Score=63.39 Aligned_cols=56 Identities=25% Similarity=0.261 Sum_probs=48.4
Q ss_pred ccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec-cccCC
Q 001402 404 IPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPE 459 (1084)
Q Consensus 404 ~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg-~~i~~ 459 (1084)
+.+..+|.|..++.|.+|+++++++|++++.|.+|+|++++.||.++.|.+ +.+.+
T Consensus 17 s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~~~i~~~~~i~~~~~ig~ 73 (79)
T cd03356 17 SVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDNAVIGENVRVVNLCIIGD 73 (79)
T ss_pred CEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCCCEECCCCEEcCCeEECC
Confidence 344556778888999999999999999999999999999999999999976 66544
No 105
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=97.50 E-value=0.00022 Score=79.46 Aligned_cols=105 Identities=19% Similarity=0.168 Sum_probs=72.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC---ccccC----cCCCcEEEEEEEcChhccccceEEEE
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD---ASTMI----LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md---~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.+.|++++++..+..+. .+.++|+.||+++..+ +..+. ..+++ +++..+++.+..+++|++.+
T Consensus 102 ~~~Gt~~al~~~~~~i~---------~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~g~v~~ 171 (267)
T cd02541 102 EPLGLGHAVLCAKPFIG---------DEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGAS-VIAVEEVPPEDVSKYGIVKG 171 (267)
T ss_pred CCCChHHHHHHHHHHhC---------CCceEEEECCeEEeCCchHHHHHHHHHHHhCCC-EEEEEEcChhcCccceEEEe
Confidence 34688888766554331 1469999999998763 56664 24555 35556777778899999999
Q ss_pred CCC-CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 253 AKD-GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 253 d~~-~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
|++ +. . .+|.+|.|||+.+. ....++.+|+|+|+.+.+..+.
T Consensus 172 d~~~~~---~---~~v~~~~Ekp~~~~---------~~~~~~~~Giyi~~~~~~~~l~ 214 (267)
T cd02541 172 EKIDGD---V---FKVKGLVEKPKPEE---------APSNLAIVGRYVLTPDIFDILE 214 (267)
T ss_pred ecCCCC---c---eEEeEEEECCCCCC---------CCCceEEEEEEEcCHHHHHHHH
Confidence 963 10 0 16899999998532 2234789999999998776553
No 106
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=97.50 E-value=0.0003 Score=78.92 Aligned_cols=117 Identities=17% Similarity=0.177 Sum_probs=80.4
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc--cCccccC-------cCCCcEEEEEEEcChhccccceEEEE
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC--FDASTMI-------LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~--md~~~~~-------~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.|+++++......+... ...+.++|+.|||++. .++..+. ..++.+|+...|..+ .+.||++..
T Consensus 84 ~gTa~ai~~a~~~~~~~-----~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~vt~gi~p~~~--~t~yGyI~~ 156 (274)
T cd02509 84 RNTAPAIALAALYLAKR-----DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLVTFGIKPTRP--ETGYGYIEA 156 (274)
T ss_pred CCcHHHHHHHHHHHHhc-----CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEEEEEeeecCC--CCCeEEEEe
Confidence 57888877666555321 1135799999999986 4444332 256778877777644 478999999
Q ss_pred CCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHh
Q 001402 253 AKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLS 312 (1084)
Q Consensus 253 d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~ 312 (1084)
|++... ..+ +|.+|.|||..++-.+ ....+..+..+|+|+|+.+++.+.+...
T Consensus 157 ~~~~~~-~~~---~V~~f~EKP~~~~a~~---~~~~g~~~wNsGiyi~~~~~l~~~l~~~ 209 (274)
T cd02509 157 GEKLGG-GVY---RVKRFVEKPDLETAKE---YLESGNYLWNSGIFLFRAKTFLEELKKH 209 (274)
T ss_pred CCcCCC-Cce---EEeEEEECcChHHHHH---HhhcCCeEEECceeeeeHHHHHHHHHHH
Confidence 966311 112 6899999998753221 1235667889999999999999888754
No 107
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=97.42 E-value=0.00041 Score=62.04 Aligned_cols=60 Identities=15% Similarity=0.187 Sum_probs=48.2
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcE
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
++.|..++.|.+|+|+++|.|++++.|.+|+|++++.||++|.|.++.+..+ +.|++++.
T Consensus 5 ~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~----------~~i~~~~~ 64 (79)
T cd05787 5 GTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADG----------AVIGKGCT 64 (79)
T ss_pred CCEECCCCEEeccEECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCC----------CEECCCCE
Confidence 3456677788888999999999999999999999999999999988887663 66666554
No 108
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=97.32 E-value=0.00059 Score=74.75 Aligned_cols=98 Identities=15% Similarity=0.215 Sum_probs=71.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|++++++..+-.+. .+.++|+.||+++ ..|+..+. .+++++|+++.+++- .+.+|++.+|++
T Consensus 83 ~~G~~~al~~a~~~~~---------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~g~v~~d~~ 151 (240)
T cd02538 83 PGGLAQAFIIGEEFIG---------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEVND--PERYGVVEFDEN 151 (240)
T ss_pred CCCHHHHHHHHHHhcC---------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEECCc--hhcCceEEecCC
Confidence 3578888765554331 2457888999865 45566664 357888888887753 568999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+ +|++|.+||..+. ..++++|+|+|+.+.+ +++.
T Consensus 152 g---------~v~~~~ekp~~~~-----------~~~~~~Giyi~~~~~l-~~l~ 185 (240)
T cd02538 152 G---------RVLSIEEKPKKPK-----------SNYAVTGLYFYDNDVF-EIAK 185 (240)
T ss_pred C---------cEEEEEECCCCCC-----------CCeEEEEEEEECHHHH-HHHH
Confidence 7 7999999997632 2367999999999876 5554
No 109
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=97.18 E-value=0.0013 Score=74.94 Aligned_cols=106 Identities=16% Similarity=0.191 Sum_probs=69.4
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc--------ccCccccC----cCCCcEEEEEEEcChhccccc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP--------CFDASTMI----LPEDASCIITVPITLDIASNH 247 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~--------~md~~~~~----~~~a~vtv~a~pv~~~~As~h 247 (1084)
.+.|+.++++...-.+. .+-++|+.||++. ++|+.+|. ..+++ |+++.++ +..+.|
T Consensus 111 ~~~Gtg~Av~~a~~~~~---------~~~~lVl~gD~~~~~~~~~~~~~dl~~l~~~h~~~~~~-tl~~~~~--~~~~~y 178 (302)
T PRK13389 111 LAKGLGHAVLCAHPVVG---------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGHS-QIMVEPV--ADVTAY 178 (302)
T ss_pred CCCChHHHHHHHHHHcC---------CCCEEEEeCcceecccccccccccHHHHHHHHHhcCCC-EEEEEEc--ccCCcc
Confidence 34678888766543321 1348888999985 37887774 34555 5666665 667899
Q ss_pred eEEEECCCCC-ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 248 GVIVAAKDGI-LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 248 GV~~~d~~~~-~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
||++.|.... ...+ .+|.+|.|||+.+. +...++.+|+|+|+.+.+ +++.
T Consensus 179 Gvv~~~~~~~~~~~~---~~V~~~~EKp~~~~---------~~s~~~~~GiYi~~~~il-~~l~ 229 (302)
T PRK13389 179 GVVDCKGVELAPGES---VPMVGVVEKPKADV---------APSNLAIVGRYVLSADIW-PLLA 229 (302)
T ss_pred eEEEecCcccccCCc---ceEEEEEECCCCCC---------CCccEEEEEEEEECHHHH-HHHH
Confidence 9999975210 0001 15899999998532 112468999999999876 5664
No 110
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=97.15 E-value=0.00083 Score=64.07 Aligned_cols=75 Identities=19% Similarity=0.178 Sum_probs=58.2
Q ss_pred cchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccc
Q 001402 381 SSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 381 ~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~ 456 (1084)
...+.++++++.+.+. ...+.++....++.|..++.|.+|+|++++.|++++.|++|+|++++.||.+++|.+..
T Consensus 7 ~~~i~~s~Ig~~~~I~-~~~I~~svi~~~~~Ig~~~~I~~siI~~~~~Ig~~~~i~~siig~~~~Ig~~~~v~~~~ 81 (104)
T cd04651 7 RGEVKNSLVSEGCIIS-GGTVENSVLFRGVRVGSGSVVEDSVIMPNVGIGRNAVIRRAIIDKNVVIPDGVVIGGDP 81 (104)
T ss_pred CCEEEeEEECCCCEEc-CeEEEeCEEeCCCEECCCCEEEEeEEcCCCEECCCCEEEeEEECCCCEECCCCEECCCc
Confidence 3344456666666664 44455555556777888899999999999999999999999999999999999997653
No 111
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=97.14 E-value=0.0014 Score=72.60 Aligned_cols=92 Identities=14% Similarity=0.194 Sum_probs=69.3
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.+++.+++..+-.+ ++.+.++|+.||+|+..|+.+|. .+++++|++.+. ..+.+||+.+|+++
T Consensus 102 ~~t~~al~~a~~~~--------~~~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~----~~~~~g~v~~d~~g- 168 (253)
T cd02524 102 TMTGGRLKRVRRYL--------GDDETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH----PPGRFGELDLDDDG- 168 (253)
T ss_pred cccHHHHHHHHHhc--------CCCCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec----CCCcccEEEECCCC-
Confidence 35677665444322 11258999999999999998885 467888887653 45789999999887
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWE 306 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~ 306 (1084)
+|..|.+||..+ ...+++|+|+|+.+.+.
T Consensus 169 --------~V~~~~ekp~~~------------~~~i~~Giyi~~~~l~~ 197 (253)
T cd02524 169 --------QVTSFTEKPQGD------------GGWINGGFFVLEPEVFD 197 (253)
T ss_pred --------CEEEEEECCCCC------------CceEEEEEEEECHHHHH
Confidence 799999999752 12678999999998764
No 112
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=97.14 E-value=0.0016 Score=58.81 Aligned_cols=50 Identities=20% Similarity=0.156 Sum_probs=40.7
Q ss_pred eeeeccEE-EeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCC
Q 001402 411 DIAASAVV-LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 411 ~i~~~~~V-~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
.|..++.| -+++|+++|+|++++.|++|+|+++++|+.++.|.++++.++
T Consensus 7 ~I~~~~~i~~~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~ 57 (80)
T cd05824 7 KIGKTAKIGPNVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN 57 (80)
T ss_pred EECCCCEECCCCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC
Confidence 34455555 468899999999999999999999999999999998888763
No 113
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=97.13 E-value=0.00055 Score=77.37 Aligned_cols=58 Identities=14% Similarity=0.130 Sum_probs=52.2
Q ss_pred eccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCC
Q 001402 403 SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 403 ~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
++.+..++.|...+.|..|||+++|.||+.+.|-+|+|++||.||.+|.|.+|||..+
T Consensus 334 d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~vg~G~~IensIIg~g 391 (433)
T KOG1462|consen 334 DSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVVVGDGVNIENSIIGMG 391 (433)
T ss_pred hhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcEecCCcceecceeccc
Confidence 3455567788888999999999999999999999999999999999999999999764
No 114
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=97.09 E-value=0.0017 Score=69.76 Aligned_cols=98 Identities=17% Similarity=0.251 Sum_probs=73.3
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.+.|++++++..+-.+ ..+.++|+.||+++..|+..+. .+++++++++.+.+ ...++|++.+|++
T Consensus 79 ~~~G~~~~l~~a~~~~---------~~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~v~~d~~ 147 (223)
T cd06915 79 EPLGTGGAIKNALPKL---------PEDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVP--DASRYGNVTVDGD 147 (223)
T ss_pred CCCcchHHHHHHHhhc---------CCCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECC--CCCcceeEEECCC
Confidence 3467888776655433 1357999999999988877663 45778888777753 4578999999887
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+ +|..|.+||..+ ...++++|+|+|+.+.+..+
T Consensus 148 ~---------~v~~~~ek~~~~-----------~~~~~~~Giy~~~~~~l~~~ 180 (223)
T cd06915 148 G---------RVIAFVEKGPGA-----------APGLINGGVYLLRKEILAEI 180 (223)
T ss_pred C---------eEEEEEeCCCCC-----------CCCcEEEEEEEECHHHHhhC
Confidence 6 799999998753 23467999999999987654
No 115
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=97.08 E-value=0.00054 Score=74.00 Aligned_cols=89 Identities=15% Similarity=0.162 Sum_probs=64.6
Q ss_pred CeEEEEcCCcccccCccccC----c-----CCCcEEEEEEEcChhc----cccceEEEECCC-CCccccccccccceeEe
Q 001402 207 GGIFTMTGDVLPCFDASTMI----L-----PEDASCIITVPITLDI----ASNHGVIVAAKD-GILNENYALSLVDDLLQ 272 (1084)
Q Consensus 207 ~gVlV~sgD~I~~md~~~~~----~-----~~a~vtv~a~pv~~~~----As~hGV~~~d~~-~~~~~~~~~~~v~~fle 272 (1084)
+.++|+.||+|+.+|+..+. . +++++|++..+++... +..+||+.+|++ + +|..|.+
T Consensus 105 ~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~~~~~~~~~~~~~~~~~~~vv~~d~~~~---------~v~~~~e 175 (217)
T cd04197 105 GDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTMVLKEASPPHRTRRTGEEFVIAVDPKTS---------RLLHYEE 175 (217)
T ss_pred CCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEEEEEeCCCccccccCCCceEEEEcCCCC---------cEEEEec
Confidence 45889999999999998884 2 4889999888886654 445799999876 5 7999999
Q ss_pred cCChhhhhcc---cccCC--C----CcceeeeeeEEecHHH
Q 001402 273 KPNVDELAKN---HAILD--D----GRALLDTGIIAVRGKA 304 (1084)
Q Consensus 273 KPs~~~m~~~---~av~~--~----~~~l~s~Giy~f~~~~ 304 (1084)
||..++.... ..+.. + ..-|+++|+|+|+.++
T Consensus 176 kp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~v 216 (217)
T cd04197 176 LPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDV 216 (217)
T ss_pred ccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCC
Confidence 9987642110 00000 0 1358899999998764
No 116
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=97.08 E-value=0.0016 Score=73.87 Aligned_cols=107 Identities=14% Similarity=0.208 Sum_probs=68.8
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc--------cCccccC----cCCCcEEEEEEEcChhccccc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC--------FDASTMI----LPEDASCIITVPITLDIASNH 247 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~--------md~~~~~----~~~a~vtv~a~pv~~~~As~h 247 (1084)
.+.|+.++++..+-.+.. . .++|+-||++.. +|+.+|. .+++.+ +++.+++ +..++|
T Consensus 106 ~~lGtg~Av~~a~~~l~~--------~-~flvv~gD~l~~~~~~~~~~~~l~~li~~~~~~~~~~-~~~~~~~-~~~~~y 174 (297)
T TIGR01105 106 QPLGLGHSILCARPVVGD--------N-PFVVVLPDIIIDDATADPLRYNLAAMIARFNETGRSQ-VLAKRMP-GDLSEY 174 (297)
T ss_pred CcCchHHHHHHHHHHhCC--------C-CEEEEECCeeccccccccchhHHHHHHHHHHHhCCcE-EEEEEcC-CCCccc
Confidence 557899998776655422 2 356666998764 5776774 256655 4555555 458899
Q ss_pred eEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHH
Q 001402 248 GVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 248 GV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
||+.+|+...+ +..+.+|.+|.|||..++-. ..-++.+|+|+|+.+.+..
T Consensus 175 Gvv~~~~~~d~--~g~v~~I~~~~EKP~~~~~~--------~s~~~~~GiYi~~~~i~~~ 224 (297)
T TIGR01105 175 SVIQTKEPLDR--EGKVSRIVEFIEKPDQPQTL--------DSDLMAVGRYVLSADIWAE 224 (297)
T ss_pred eEEEecccccC--CCCeeeEeEEEECCCCcccC--------CcCEEEEEEEEECHHHHHH
Confidence 99999642000 00122579999999764311 1237899999999997653
No 117
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=97.02 E-value=0.0016 Score=70.23 Aligned_cols=95 Identities=12% Similarity=0.010 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC------cCCCcEEEEEEEcChhccccceEEEECC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI------LPEDASCIITVPITLDIASNHGVIVAAK 254 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~------~~~a~vtv~a~pv~~~~As~hGV~~~d~ 254 (1084)
+.|++.+++..+..+. .+.++|+.||+|+.+|+..+. ..++.+|+...+.+ ..+.+|++.+|+
T Consensus 81 ~~g~~~~l~~~~~~~~---------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~ 149 (221)
T cd06422 81 LLETGGGIKKALPLLG---------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP--GHNGVGDFSLDA 149 (221)
T ss_pred ccccHHHHHHHHHhcC---------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC--CCCCcceEEECC
Confidence 3477777766555331 147999999999999988874 24556666655543 567899999998
Q ss_pred CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 255 DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 255 ~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
++ +|..|.+||.. .++.+|+|+|+.+.+..+.
T Consensus 150 ~~---------~v~~~~~~~~~--------------~~~~~Giyi~~~~~l~~l~ 181 (221)
T cd06422 150 DG---------RLRRGGGGAVA--------------PFTFTGIQILSPELFAGIP 181 (221)
T ss_pred CC---------cEeecccCCCC--------------ceEEEEEEEEcHHHHhhCC
Confidence 77 78999998842 3679999999998776654
No 118
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.92 E-value=0.0022 Score=76.72 Aligned_cols=83 Identities=13% Similarity=0.142 Sum_probs=64.7
Q ss_pred ccCCcccccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccC-------------------Ccee
Q 001402 369 CAYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAH-------------------GVSI 429 (1084)
Q Consensus 369 ~~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~-------------------~v~V 429 (1084)
..||+++. + ..+.++++++.+.+ ....+.++.+..+|.|..++.|.+|+|++ ++.|
T Consensus 295 ~~~~a~~~--~--~~~~~~~ig~~~~i-~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~I 369 (429)
T PRK02862 295 YLPPSKLL--D--ATITESIIAEGCII-KNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGI 369 (429)
T ss_pred CCCCcccc--c--cEEEeCEECCCCEE-CCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEE
Confidence 35666663 2 22235677777776 33345667777788888999999999986 6999
Q ss_pred CCCcEEEEcEECCCcEECCCCeEeccc
Q 001402 430 GEDSLIYDSNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 430 ~~~s~Ve~S~l~~~v~IG~~~iIsg~~ 456 (1084)
|++|.|++|+|+.++.||++|+|.+..
T Consensus 370 g~~~~i~~~ii~~~~~i~~~~~~~~~~ 396 (429)
T PRK02862 370 GEGTTIKRAIIDKNARIGNNVRIVNKD 396 (429)
T ss_pred CCCCEEEEEEECCCcEECCCcEEecCC
Confidence 999999999999999999999997554
No 119
>PRK10122 GalU regulator GalF; Provisional
Probab=96.85 E-value=0.0033 Score=71.41 Aligned_cols=110 Identities=17% Similarity=0.209 Sum_probs=69.0
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc--------cCccccC----cCCCcEEEEEEEcChhccccc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC--------FDASTMI----LPEDASCIITVPITLDIASNH 247 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~--------md~~~~~----~~~a~vtv~a~pv~~~~As~h 247 (1084)
.+.|++++++..+-.+. +.+.| |+.||++.. +|+..|. ..+++++ +...++ +..++|
T Consensus 106 ~~lGtg~al~~a~~~l~--------~~~fv-vi~gD~l~~~~~~~~~~~dl~~li~~h~~~~~~~~-~~~~~~-~~~~~y 174 (297)
T PRK10122 106 QPLGLGHSILCARPAIG--------DNPFV-VVLPDVVIDDASADPLRYNLAAMIARFNETGRSQV-LAKRMP-GDLSEY 174 (297)
T ss_pred CcCchHHHHHHHHHHcC--------CCCEE-EEECCeeccCccccccchhHHHHHHHHHHhCCcEE-EEEECC-CCCCCc
Confidence 34688898877666542 13344 555999864 5777774 3456643 444544 378899
Q ss_pred eEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 248 GVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 248 GV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
||+..|.+...+ . .+.+|++|.|||..++.. ..-++.+|+|+|+++.+..+..
T Consensus 175 Gvv~~d~~~~~~-g-~v~~I~~~~EKp~~~~~~--------~s~~~~~GiYi~~~~i~~~l~~ 227 (297)
T PRK10122 175 SVIQTKEPLDRE-G-KVSRIVEFIEKPDQPQTL--------DSDLMAVGRYVLSADIWPELER 227 (297)
T ss_pred eEEEecCcccCC-C-CeeeEEEEEECCCCcccC--------CccEEEEEEEEECHHHHHHHHh
Confidence 999997421000 0 112588999999754211 1226899999999998766543
No 120
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.84 E-value=0.0022 Score=76.56 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=56.4
Q ss_pred cccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 387 HLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 387 ~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++++.+.+. ...+.++.+..+|.|..++.|.+|+|+++|+|++++.|++|+|++++.|+++|+|. ++.-++
T Consensus 328 s~i~~~~~i~-~~~i~~svi~~~~~I~~~~~i~~svi~~~~~I~~~~~i~~~ii~~~~~i~~~~~i~~~~~~~~ 400 (425)
T PRK00725 328 SLVSGGCIIS-GAVVRRSVLFSRVRVNSFSNVEDSVLLPDVNVGRSCRLRRCVIDRGCVIPEGMVIGEDPEEDA 400 (425)
T ss_pred CEEcCCcEEc-CccccCCEECCCCEECCCCEEeeeEEcCCCEECCCCEEeeEEECCCCEECCCCEECCCCCCCC
Confidence 4555555442 22344566667888889999999999999999999999999999999999999997 344333
No 121
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=96.83 E-value=0.0031 Score=56.28 Aligned_cols=49 Identities=22% Similarity=0.215 Sum_probs=43.6
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
....+|.|..++.|.+|++++++.|++++.|++|+|+++++||.+|.|.
T Consensus 18 ~ig~~~~ig~~~~i~~s~i~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 66 (79)
T cd05787 18 VIGRNCKIGKNVVIDNSYIWDDVTIEDGCTIHHSIVADGAVIGKGCTIP 66 (79)
T ss_pred EECCCCEECCCCEEeCcEEeCCCEECCCCEEeCcEEcCCCEECCCCEEC
Confidence 3444667778889999999999999999999999999999999999985
No 122
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=96.82 E-value=0.0024 Score=74.74 Aligned_cols=77 Identities=16% Similarity=0.144 Sum_probs=62.3
Q ss_pred cCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecccc
Q 001402 379 GTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 379 gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i 457 (1084)
|....+-++.+++.+.+. +.+.++.+..+|.|..++.|.+|+|..+|.|++++.|++|+|+.++.||+++.|.+..+
T Consensus 282 ~~~~~i~~~~Ig~~~~i~--~~v~~s~i~~~~~I~~~~~i~~sii~~~~~I~~~~~i~~~ii~~~~~v~~~~~~~~~~~ 358 (369)
T TIGR02092 282 AENSKVENSLVANGCIIE--GKVENSILSRGVHVGKDALIKNCIIMQRTVIGEGAHLENVIIDKDVVIEPNVKIAGTSE 358 (369)
T ss_pred cCCCEEEEeEEcCCCEEe--eEEeCCEECCCCEECCCCEEEeeEEeCCCEECCCCEEEEEEECCCCEECCCCEeCCCCC
Confidence 444444566777777774 23555666678889999999999999999999999999999999999999999977654
No 123
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=96.82 E-value=0.0046 Score=67.35 Aligned_cols=96 Identities=17% Similarity=0.212 Sum_probs=70.6
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
+.|+.++++..+..+. .+.++|+.||+++..|+.++. ..++++|++..+++ ..+.+|++.+|++
T Consensus 82 ~~g~~~sl~~a~~~i~---------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~d~~- 149 (236)
T cd04189 82 PLGLAHAVLAARDFLG---------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVE--DPRRFGVAVVDDG- 149 (236)
T ss_pred CCChHHHHHHHHHhcC---------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECC--CcccceEEEEcCC-
Confidence 4577887776554332 236888999999998888774 45778888887764 3477999988843
Q ss_pred CccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 257 ILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+|.+|.+||..+ .....++|+|+|+...+..+
T Consensus 150 ---------~v~~~~ek~~~~-----------~~~~~~~Giy~~~~~~~~~l 181 (236)
T cd04189 150 ---------RIVRLVEKPKEP-----------PSNLALVGVYAFTPAIFDAI 181 (236)
T ss_pred ---------eEEEEEECCCCC-----------CCCEEEEEEEEeCHHHHHHH
Confidence 589999999753 13467999999998877544
No 124
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.80 E-value=0.002 Score=75.72 Aligned_cols=73 Identities=23% Similarity=0.242 Sum_probs=59.9
Q ss_pred CcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 380 TSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 380 t~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
....+.++++++.+.+.+ .+.++.+..+|.|..++.|.+|+|+++|+|+++|.|++|+|++++.||.+|+|.+
T Consensus 287 ~~~~i~~~~Ig~~~~I~~--~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 359 (380)
T PRK05293 287 ENAKVKNSLVVEGCVVYG--TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGENAVIGDGVIIGG 359 (380)
T ss_pred CCCEEecCEECCCCEEcc--eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCCCEECCCCEEcC
Confidence 334444667777776642 2445566668889999999999999999999999999999999999999999987
No 125
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=96.59 E-value=0.0031 Score=74.85 Aligned_cols=54 Identities=13% Similarity=0.147 Sum_probs=48.8
Q ss_pred eeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 401 LCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 401 ~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
+.++.+..+|.|..++.|.+|+|+++|+|+++|.|++|+|++++.||++|.|.+
T Consensus 329 i~~svIg~~~~I~~~~~i~~sii~~~~~i~~~~~i~~~ii~~~~~i~~~~~i~~ 382 (407)
T PRK00844 329 VRNSVLSPNVVVESGAEVEDSVLMDGVRIGRGAVVRRAILDKNVVVPPGATIGV 382 (407)
T ss_pred eEcCEECCCCEECCCCEEeeeEECCCCEECCCCEEEeeEECCCCEECCCCEECC
Confidence 445566678889999999999999999999999999999999999999999966
No 126
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=96.31 E-value=0.012 Score=53.16 Aligned_cols=49 Identities=10% Similarity=0.099 Sum_probs=44.0
Q ss_pred CCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 406 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
+..+|.|..++.|.+|++..++.|++++.|.+|+++.++.||++|.+.+
T Consensus 20 Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~~~v~~~~~~~~ 68 (80)
T cd05824 20 IGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWNSTVGRWTRLEN 68 (80)
T ss_pred ECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCCCEECCCcEEec
Confidence 3446677788899999999999999999999999999999999999976
No 127
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=96.20 E-value=0.018 Score=62.57 Aligned_cols=97 Identities=11% Similarity=0.096 Sum_probs=69.3
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
+.|++.+++..+..+.. .+.++|+.||+++..|+..+. ..+.++++++.+. ...+||++.+|+++
T Consensus 81 ~~g~~~~l~~a~~~l~~--------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~~v~~d~~~ 149 (231)
T cd04183 81 TLGAACTVLLAADLIDN--------DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFS---SHPRWSYVKLDENG 149 (231)
T ss_pred CCcHHHHHHHHHhhcCC--------CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeC---CCCCeEEEEECCCC
Confidence 35778877665543321 246999999999999887764 3456777777765 45689999999877
Q ss_pred CccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHH-HHHHHHH
Q 001402 257 ILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGK-AWEELVM 310 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~-~~~~ll~ 310 (1084)
+|+.|.+|+.. ...+.+|+|+|+.+ .+.+++.
T Consensus 150 ---------~v~~~~ek~~~-------------~~~~~~Giy~~~~~~~~~~~l~ 182 (231)
T cd04183 150 ---------RVIETAEKEPI-------------SDLATAGLYYFKSGSLFVEAAK 182 (231)
T ss_pred ---------CEEEeEEcCCC-------------CCccEeEEEEECcHHHHHHHHH
Confidence 78899998532 12468999999987 4445554
No 128
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=96.07 E-value=0.014 Score=62.71 Aligned_cols=77 Identities=16% Similarity=0.311 Sum_probs=60.0
Q ss_pred CCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhc
Q 001402 206 EGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAK 281 (1084)
Q Consensus 206 p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~ 281 (1084)
.+.++|+.||+++..++..|. ..+++++++..+.+. .+.+|++..|+ + +|.+|.+||...
T Consensus 95 ~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~g~~~~d~-~---------~v~~~~ek~~~~---- 158 (220)
T cd06426 95 TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV--QVPYGVVETEG-G---------RITSIEEKPTHS---- 158 (220)
T ss_pred CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--CCcceEEEECC-C---------EEEEEEECCCCC----
Confidence 457999999999988887774 356788887777543 36799999885 5 689999998641
Q ss_pred ccccCCCCcceeeeeeEEecHHHHHH
Q 001402 282 NHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 282 ~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
.++.+|+|+|+.++++.
T Consensus 159 ---------~~~~~Giy~~~~~~~~~ 175 (220)
T cd06426 159 ---------FLVNAGIYVLEPEVLDL 175 (220)
T ss_pred ---------CeEEEEEEEEcHHHHhh
Confidence 25689999999987643
No 129
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=96.01 E-value=0.026 Score=68.33 Aligned_cols=119 Identities=12% Similarity=0.136 Sum_probs=72.4
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC--ccccC-------cCCCcEEEEEEEcChhccccceEEEE
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD--ASTMI-------LPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md--~~~~~-------~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.|+++++.-..+.+... +...+.++|+.|||++..+ +..+. ..++-+|+... |....+.||++..
T Consensus 84 ~gTa~ai~~aa~~~~~~----~~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvtlgi~--p~~p~t~YGyI~~ 157 (468)
T TIGR01479 84 RNTAPAIALAALLAARR----NGEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVTFGIV--PTHPETGYGYIRR 157 (468)
T ss_pred cCchHHHHHHHHHHHHH----HCCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEEEEec--CCCCCCCceEEEe
Confidence 46777764333333221 1123469999999987643 33332 22444444443 3455678999999
Q ss_pred CCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHh
Q 001402 253 AKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLS 312 (1084)
Q Consensus 253 d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~ 312 (1084)
|+.-.....+ +|..|.|||+.++-+. ....+..+..+|+|+|+.+++.+.+..+
T Consensus 158 ~~~~~~~~~~---~V~~f~EKP~~~~a~~---~l~~g~~~wNsGif~~~~~~ll~~l~~~ 211 (468)
T TIGR01479 158 GEPLAGEDVY---QVQRFVEKPDLATAQA---YLESGDYYWNSGMFLFRASRYLAELKKH 211 (468)
T ss_pred CCccCCCCce---EEeEEEECCChHHHHH---HHhcCCeEEEeeEEEEEHHHHHHHHHHH
Confidence 8531000011 6899999998643110 1235667899999999999988888754
No 130
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=95.97 E-value=0.027 Score=60.87 Aligned_cols=104 Identities=16% Similarity=0.214 Sum_probs=71.7
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcc--cccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVL--PCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I--~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|++++++..+..+.. ..+.|+|+-||+. ...++..+. ..++++++.+.++. ....||++..|++
T Consensus 73 ~g~~~ai~~a~~~~~~-------~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~ 143 (229)
T cd02540 73 LGTGHAVKQALPALKD-------FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELE--DPTGYGRIIRDGN 143 (229)
T ss_pred CCCHHHHHHHHHhhcc-------CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcC--CCCCccEEEEcCC
Confidence 5788887776654422 1468999999994 344554442 34578887777654 4578999888876
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+ +|.+|.+||.... . ++...++++|+|+|+.+.+.+++.
T Consensus 144 ~---------~v~~~~ek~~~~~-~------~~~~~~~~~giy~~~~~~~~~~l~ 182 (229)
T cd02540 144 G---------KVLRIVEEKDATE-E------EKAIREVNAGIYAFDAEFLFEALP 182 (229)
T ss_pred C---------CEEEEEECCCCCh-H------HHhhceEEeEEEEEEHHHHHHHHH
Confidence 6 7899999986421 0 011246799999999988777775
No 131
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=95.95 E-value=0.016 Score=59.68 Aligned_cols=61 Identities=18% Similarity=0.224 Sum_probs=40.9
Q ss_pred CceeeeccEEE-eccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 409 VSDIAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 409 g~~i~~~~~V~-~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
+|.|..++.|. +++|+.+|.|++++.|++|+|++++.|+.++.+.++++.. ++.|.++.++
T Consensus 41 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~----------~~~I~~~~~i 102 (163)
T cd05636 41 GCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGE----------NVNLGAGTIT 102 (163)
T ss_pred CCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECC----------CCEECCCcEE
Confidence 44454555554 4677777777777777777777777777777777766655 3666666654
No 132
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=95.93 E-value=0.011 Score=68.79 Aligned_cols=47 Identities=26% Similarity=0.323 Sum_probs=32.4
Q ss_pred eeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecccc
Q 001402 411 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 411 ~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i 457 (1084)
.|..++.|.+|+|.+.|.|++++.|++|+|.+++.||++|+|.++++
T Consensus 256 ~i~~~~~i~~~~i~~~~~Ig~~~~I~~~~i~~~~~Ig~~~~i~~~~i 302 (353)
T TIGR01208 256 VVGEGAKIVNSVIRGPAVIGEDCIIENSYIGPYTSIGEGVVIRDAEV 302 (353)
T ss_pred EECCCCEEeCCEEECCcEECCCCEEcCcEECCCCEECCCCEEeeeEE
Confidence 45566666667777777777777777777777777777777765554
No 133
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=95.83 E-value=0.019 Score=62.26 Aligned_cols=99 Identities=12% Similarity=0.045 Sum_probs=68.6
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCcc-ccCcCCCcEEEEEEEcChhccccceEEEECCCCCccc
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDAS-TMILPEDASCIITVPITLDIASNHGVIVAAKDGILNE 260 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~-~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~ 260 (1084)
.|++.+++..+-.+ .+.++|+.||+++..+.- .+...++++|++..+.+......+++...|. +
T Consensus 79 ~g~~~s~~~~~~~~----------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 143 (229)
T cd02523 79 TNNIYSLYLARDFL----------DEDFLLLEGDVVFDPSILERLLSSPADNAILVDKKTKEWEDEYVKDLDDA-G---- 143 (229)
T ss_pred hCcHHHHHHHHHHc----------CCCEEEEeCCEecCHHHHHHHHcCCCCCeEEEccCcccccccceeeecCc-c----
Confidence 47777766554433 247999999999766542 2335677888887775556666777654443 3
Q ss_pred cccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 261 NYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 261 ~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
++..+.+||..++ ...+..+|+|+|+.+.+..+..
T Consensus 144 -----~v~~~~~k~~~~~----------~~~~~~~Giy~~~~~~~~~l~~ 178 (229)
T cd02523 144 -----VLLGIISKAKNLE----------EIQGEYVGISKFSPEDADRLAE 178 (229)
T ss_pred -----ceEeecccCCCcc----------hhceEEEeEEEECHHHHHHHHH
Confidence 5889999997642 2346899999999998776654
No 134
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=95.81 E-value=0.017 Score=61.99 Aligned_cols=59 Identities=12% Similarity=0.082 Sum_probs=45.2
Q ss_pred eeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 411 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 411 ~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
.|..++.|.+++|+++|+|+++++|++|+|++++.|+.+|.|.++.|.. .+.|.+++.+
T Consensus 10 ~I~~~a~i~~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~----------~~~I~~~v~I 68 (204)
T TIGR03308 10 TLHPTAELTESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGK----------FCSIAAMVRI 68 (204)
T ss_pred eECCCcEEeccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECC----------CCEECCCCEE
Confidence 3555666777888888888888888888888888888888888777766 3667766654
No 135
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=95.77 E-value=0.015 Score=67.74 Aligned_cols=81 Identities=20% Similarity=0.240 Sum_probs=62.7
Q ss_pred cCCcccccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCC
Q 001402 370 AYELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSL 449 (1084)
Q Consensus 370 ~p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~ 449 (1084)
.++.-|+|-+ ...-++.+++.+.+... .+.++.+..+|.|..++.|.+|+|++++.|++++.|.+|+|+++++||.+
T Consensus 280 ~~~~~~i~~~--~~i~~~~ig~~~~I~~~-~v~~s~i~~~~~I~~~~~i~~sii~~~~~v~~~~~l~~~ivg~~~~i~~~ 356 (361)
T TIGR02091 280 LPPAKFVDSD--AQVVDSLVSEGCIISGA-TVSHSVLGIRVRIGSGSTVEDSVIMGDVGIGRGAVIRNAIIDKNVRIGEG 356 (361)
T ss_pred CCCceEecCC--CEEECCEECCCCEECCC-EEEccEECCCCEECCCCEEeeeEEeCCCEECCCCEEeeeEECCCCEECCC
Confidence 3455565522 23344667777777654 45566666788888999999999999999999999999999999999999
Q ss_pred CeEe
Q 001402 450 SIVV 453 (1084)
Q Consensus 450 ~iIs 453 (1084)
++|.
T Consensus 357 ~~i~ 360 (361)
T TIGR02091 357 VVIG 360 (361)
T ss_pred CEeC
Confidence 9884
No 136
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=95.66 E-value=0.0089 Score=64.60 Aligned_cols=108 Identities=16% Similarity=0.153 Sum_probs=71.6
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC------cCCCcEEEEEEEcChhc-------ccc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI------LPEDASCIITVPITLDI-------ASN 246 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~------~~~a~vtv~a~pv~~~~-------As~ 246 (1084)
.+.|+++++++..-.+ .+.++|++||+|+.+|+..+. ..++++|+.....+... +++
T Consensus 87 ~~~Gta~~l~~~~~~i----------~~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (216)
T cd02507 87 ESAGDALRLRDIRGLI----------RSDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLASPPVSTEQSKKTEE 156 (216)
T ss_pred CCCccHHHHHHHhhcC----------CCCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEeccCCCCccccccCCC
Confidence 4568888877655433 235999999999999998876 24566666666554433 889
Q ss_pred ceEEEECCCCCccccccccccceeEecCChh-hh--hcccccC-CCC----cceeeeeeEEecHHH
Q 001402 247 HGVIVAAKDGILNENYALSLVDDLLQKPNVD-EL--AKNHAIL-DDG----RALLDTGIIAVRGKA 304 (1084)
Q Consensus 247 hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~-~m--~~~~av~-~~~----~~l~s~Giy~f~~~~ 304 (1084)
++++.+|++... .++..+.+||... .+ +. ..+. .++ .-|+|.++|+|+..+
T Consensus 157 ~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~i~~-~~l~~~~~~~i~~dl~D~~iyi~s~~V 215 (216)
T cd02507 157 EDVIAVDSKTQR------LLLLHYEEDLDEDLELIIRK-SLLSKHPNVTIRTDLLDCHIYICSPDV 215 (216)
T ss_pred CcEEEEcCCCCc------eEEEechhhcCcCcccccCH-HHHhcCCCEEEEcCcccccEEEecCcC
Confidence 999999998411 1677888888653 12 11 1111 111 247899999998754
No 137
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=95.53 E-value=0.035 Score=56.80 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=17.2
Q ss_pred ccccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
|+|+.+|.|+++++|++|+|++++.||.+|+|.
T Consensus 62 ~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~ 94 (155)
T cd04745 62 TVLEENGHIGHGAILHGCTIGRNALVGMNAVVM 94 (155)
T ss_pred eEEcCCCEECCCcEEECCEECCCCEECCCCEEe
Confidence 455555555555555555555555555555543
No 138
>PLN02472 uncharacterized protein
Probab=95.51 E-value=0.024 Score=62.45 Aligned_cols=40 Identities=30% Similarity=0.375 Sum_probs=29.9
Q ss_pred eccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++|+.+|+|+++++|++|+|++++.||.+|+|. ++.|..
T Consensus 126 ~tvIG~~v~IG~~s~L~~~~Igd~v~IG~~svI~~gavIg~ 166 (246)
T PLN02472 126 ETLIDRYVTIGAYSLLRSCTIEPECIIGQHSILMEGSLVET 166 (246)
T ss_pred CcEECCCCEECCCcEECCeEEcCCCEECCCCEECCCCEECC
Confidence 4778888888888888888888888888888764 444433
No 139
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=95.41 E-value=0.032 Score=57.12 Aligned_cols=53 Identities=19% Similarity=0.271 Sum_probs=43.2
Q ss_pred CCceeeeccEEEe----ccccCCceeCCCcEE-----EEcEECCCcEECCCCeEeccccCCC
Q 001402 408 TVSDIAASAVVLS----SKIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 408 ~g~~i~~~~~V~~----SvL~~~v~V~~~s~V-----e~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
.+|.|..++.+.. .+|+.+|.|+++++| .+|+|++++.||.+++|.+++|..+
T Consensus 23 ~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 84 (155)
T cd04745 23 KNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTIGRN 84 (155)
T ss_pred CCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEECCC
Confidence 3555556665654 689999999999999 6699999999999999999998763
No 140
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=95.36 E-value=0.045 Score=56.41 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=47.5
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
.+..+|.|..++.|.+|+|+.++.|+.++.+++|+|++++.||++|.+.+...+.
T Consensus 55 ~Ig~~~~I~~~~~i~~siig~~~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~ 109 (163)
T cd05636 55 VLGDGCVVGNSVEVKNSIIMDGTKVPHLNYVGDSVLGENVNLGAGTITANLRFDD 109 (163)
T ss_pred EECCCCEECCCcEEeeeEecCCCEeccCCEEecCEECCCCEECCCcEEcccCcCC
Confidence 3444667888889999999999999999999999999999999999998766543
No 141
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=95.34 E-value=0.054 Score=55.26 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=18.9
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
+|+.++.|+.++.|++++|++++.||.++.|.
T Consensus 62 ~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~v~ 93 (153)
T cd04645 62 IIGDNVTVGHGAVLHGCTIGDNCLIGMGAIIL 93 (153)
T ss_pred EEcCCcEECCCcEEeeeEECCCCEECCCCEEc
Confidence 55556566656666555555556555555554
No 142
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=95.14 E-value=0.04 Score=66.08 Aligned_cols=81 Identities=15% Similarity=0.173 Sum_probs=63.1
Q ss_pred CCcccccccCcchhcccccccccccccccceeeccCCCCceeeeccEEEeccccC----------------C---ceeCC
Q 001402 371 YELLFLHFGTSSEVLDHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAH----------------G---VSIGE 431 (1084)
Q Consensus 371 p~a~F~h~gt~~e~l~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~----------------~---v~V~~ 431 (1084)
||+++. |+ .+..+++.+.+.+. ...+.++.+..+|.|..++.|.+|++.. + ++|++
T Consensus 304 ~~~~~~--~~--~i~~s~I~~~~~I~-~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~ 378 (436)
T PLN02241 304 PPSKIE--DC--RITDSIISHGCFLR-ECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGE 378 (436)
T ss_pred CCcEec--CC--eEEEeEEcCCcEEc-CeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECC
Confidence 555552 22 23447777788776 5456677777888999999999999966 2 38999
Q ss_pred CcEEEEcEECCCcEECCCCeEeccc
Q 001402 432 DSLIYDSNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 432 ~s~Ve~S~l~~~v~IG~~~iIsg~~ 456 (1084)
++.|++|+|.+++.||++|+|.+..
T Consensus 379 ~~~i~~~vI~~~v~Ig~~~~i~~~~ 403 (436)
T PLN02241 379 NTKIRNAIIDKNARIGKNVVIINKD 403 (436)
T ss_pred CCEEcceEecCCCEECCCcEEeccc
Confidence 9999999999999999999997554
No 143
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=95.10 E-value=0.043 Score=58.36 Aligned_cols=38 Identities=16% Similarity=0.318 Sum_probs=20.2
Q ss_pred cccCCceeCCCcEE-----EEcEECCCcEECCCCeEeccccCC
Q 001402 422 KIAHGVSIGEDSLI-----YDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~V-----e~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|+.+|.|+++++| .+|+|++++.||.+|+|.+++|..
T Consensus 49 ~Ig~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~ 91 (192)
T TIGR02287 49 VLKEGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGR 91 (192)
T ss_pred EECCCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECC
Confidence 44555555555555 345555555555555555555544
No 144
>PLN02296 carbonate dehydratase
Probab=95.02 E-value=0.049 Score=60.89 Aligned_cols=51 Identities=22% Similarity=0.352 Sum_probs=35.7
Q ss_pred CceeeeccEEEe----ccccCCceeCCCcEEE-----------EcEECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLS----SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~----SvL~~~v~V~~~s~Ve-----------~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|.|..++.|.. .+|+.+|.|+++++|. +|+|++++.||.||+|.+|.|..
T Consensus 76 ~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~v~IG~~avI~g~~Igd 141 (269)
T PLN02296 76 GSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDNVTIGHSAVLHGCTVED 141 (269)
T ss_pred CCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCCCEECCCceecCCEECC
Confidence 444444544443 3678888888888885 57888888888888888877765
No 145
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=94.94 E-value=0.089 Score=46.28 Aligned_cols=44 Identities=25% Similarity=0.397 Sum_probs=29.4
Q ss_pred ceeeeccEEEe-ccccCCceeCCCcEEEEc---------EECCCcEECCCCeEe
Q 001402 410 SDIAASAVVLS-SKIAHGVSIGEDSLIYDS---------NISSGIQIGSLSIVV 453 (1084)
Q Consensus 410 ~~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S---------~l~~~v~IG~~~iIs 453 (1084)
+.|..++.|.. ++|++++.|++++.|.++ +|++++.||.+|+|.
T Consensus 7 ~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~ig~~~~v~~~~~i~ 60 (78)
T cd00208 7 VKIHPKAVIRGPVVIGDNVNIGPGAVIGAATGPNEKNPTIIGDNVEIGANAVIH 60 (78)
T ss_pred eEECCCCEEeCcEEECCCCEECCCCEEEeccCCCccCCcEECCCcEECCCCEEe
Confidence 34555556654 788888888888888874 555555666555553
No 146
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=94.87 E-value=0.04 Score=58.62 Aligned_cols=52 Identities=13% Similarity=0.289 Sum_probs=41.5
Q ss_pred CCceeeeccEE-----EeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 408 TVSDIAASAVV-----LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 408 ~g~~i~~~~~V-----~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.+|.|..++.| .+|+|+.+|.|+.+++|++|+|++++.||.+|+|. ++.|..
T Consensus 52 ~~t~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~I~~siIg~~~~IG~ga~I~~g~~IG~ 109 (192)
T TIGR02287 52 EGANIQDNCVMHGFPGQDTVVEENGHVGHGAILHGCIVGRNALVGMNAVVMDGAVIGE 109 (192)
T ss_pred CCCEECCCeEEeccCCCCCeECCCCEECCCCEEcCCEECCCCEECCCcccCCCeEECC
Confidence 34555556555 46999999999999999999999999999999885 355544
No 147
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=94.82 E-value=0.064 Score=64.38 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=35.8
Q ss_pred CCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccC
Q 001402 406 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
+..+|.|..++.|.+|+|+.+|.|+++++|++|+|+.++.||.+|.|. ++.+.
T Consensus 282 ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~ 335 (451)
T TIGR01173 282 IGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLG 335 (451)
T ss_pred ECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEEC
Confidence 334556666667777777777777777777777777777777777765 34443
No 148
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=94.71 E-value=0.078 Score=54.99 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=38.0
Q ss_pred eeeeccEEEe-ccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 411 DIAASAVVLS-SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 411 ~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
.|..++.+.. ++|+.+|.|+.++.|.+++|++++.||.++.|.++.+..
T Consensus 72 ~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~~~~i~~ 121 (167)
T cd00710 72 SIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGDNCVIGHNAVVDGVEIPP 121 (167)
T ss_pred eECCCCEEeCCEEECCCCEECCCCEEECCEECCCCEEcCCCEEeCCEeCC
Confidence 3444445544 788899999999999999999999999999887766544
No 149
>PLN02296 carbonate dehydratase
Probab=94.70 E-value=0.056 Score=60.43 Aligned_cols=40 Identities=15% Similarity=0.322 Sum_probs=35.5
Q ss_pred eccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|+|+.+|.|+.+|+|..|+|++++.||.+|+|. |+.|.+
T Consensus 119 ~siIG~~v~IG~~avI~g~~Igd~v~IG~ga~I~~gv~Ig~ 159 (269)
T PLN02296 119 PTIIGDNVTIGHSAVLHGCTVEDEAFVGMGATLLDGVVVEK 159 (269)
T ss_pred CcEeCCCCEECCCceecCCEECCCcEECCCcEECCCeEECC
Confidence 6899999999999999999999999999999885 566555
No 150
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=94.70 E-value=0.11 Score=53.18 Aligned_cols=32 Identities=19% Similarity=0.417 Sum_probs=17.9
Q ss_pred ccccCCceeCCCcEEEEcEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iI 452 (1084)
++|+.++.|++++.|++++|++++.||.+|+|
T Consensus 62 ~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i 93 (154)
T cd04650 62 TEIGDYVTIGHNAVVHGAKVGNYVIVGMGAIL 93 (154)
T ss_pred eEECCCCEECCCcEEECcEECCCCEEcCCCEE
Confidence 45555555555555555555555555555555
No 151
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.68 E-value=0.053 Score=65.42 Aligned_cols=50 Identities=18% Similarity=0.354 Sum_probs=31.0
Q ss_pred ceeeeccEEE-eccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 410 SDIAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 410 ~~i~~~~~V~-~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+.|..++.|. +++|+++|.|+++++|++|+|++++.|+.+|.|.++++.+
T Consensus 272 ~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~ 322 (456)
T PRK09451 272 VEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGA 322 (456)
T ss_pred CEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCC
Confidence 3344444444 3566666667767766667777777777766666666655
No 152
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=94.63 E-value=0.093 Score=53.51 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=42.3
Q ss_pred CceeeeccEEEe----ccccCCceeCCCcEEEEc-----EECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLS----SKIAHGVSIGEDSLIYDS-----NISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~----SvL~~~v~V~~~s~Ve~S-----~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++.|..+++|.. ++|+++|.|+++++|..+ +|++++.|+.+|+|.++.|..
T Consensus 23 ~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 82 (153)
T cd04645 23 GSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDNVTVGHGAVLHGCTIGD 82 (153)
T ss_pred CcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCCcEECCCcEEeeeEECC
Confidence 445555655554 489999999999999984 999999999999999988766
No 153
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=94.56 E-value=0.098 Score=55.39 Aligned_cols=52 Identities=27% Similarity=0.369 Sum_probs=36.6
Q ss_pred CCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccC
Q 001402 407 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
..+|.|..++.|.+++|+.+|.|+++++|++|+|+.++.||.+|+|. ++.+.
T Consensus 37 g~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig 89 (193)
T cd03353 37 GEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLG 89 (193)
T ss_pred CCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEEC
Confidence 33555666677777777777777777777777777777777777775 45543
No 154
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=94.53 E-value=0.08 Score=56.08 Aligned_cols=55 Identities=20% Similarity=0.313 Sum_probs=34.4
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEE-EcEECCCcEECCCCeEeccccCC
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
....+|.|..++.+.+|+|+.++.|++++.|. +++|++++.||+++.+.+..+.+
T Consensus 52 ~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~ 107 (193)
T cd03353 52 TIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGE 107 (193)
T ss_pred EECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEecceEcC
Confidence 33345555556666666777777777777665 56666667666666666555544
No 155
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.39 E-value=0.079 Score=63.68 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=37.1
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEE-EcEECCCcEECCCCeEeccccCC
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
.+..+|.| .++.+.+|+|+.+|.|+++++|. +|+|++++.||.++.|.++++.+
T Consensus 299 ~I~~~~~I-~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~ 353 (450)
T PRK14360 299 QIGENVTV-LYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGE 353 (450)
T ss_pred EEcCCCEE-eeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCC
Confidence 33345444 34566677778888888888776 57777788888877777766655
No 156
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=94.31 E-value=0.088 Score=57.75 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=60.8
Q ss_pred CCeEEEEcCCcc-c-ccCccccC----cCCCcEEEEEEEc-Ch---hccccceEEEECCCCCccccccccccceeEecCC
Q 001402 206 EGGIFTMTGDVL-P-CFDASTMI----LPEDASCIITVPI-TL---DIASNHGVIVAAKDGILNENYALSLVDDLLQKPN 275 (1084)
Q Consensus 206 p~gVlV~sgD~I-~-~md~~~~~----~~~a~vtv~a~pv-~~---~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs 275 (1084)
.+.|+|+.||+- . .-++..+. .+++++++++.+. +. ..-+.+||+ +|+++ +|+.|.+||.
T Consensus 91 ~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~d~~g---------~v~~~~e~~~ 160 (245)
T PRK05450 91 DDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVV-LDADG---------RALYFSRAPI 160 (245)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEE-eCCCC---------cEEEecCCCC
Confidence 467999999983 2 22233332 2457777777776 33 344568887 78877 7999999995
Q ss_pred hhhhhcccccC--CCCcceeeeeeEEecHHHHHHHHH
Q 001402 276 VDELAKNHAIL--DDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 276 ~~~m~~~~av~--~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
.++- .+.. .+...+..+|+|+|+.+.+..+..
T Consensus 161 ~~~~---~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~ 194 (245)
T PRK05450 161 PYGR---DAFADSAPTPVYRHIGIYAYRRGFLRRFVS 194 (245)
T ss_pred CCCC---CccccccCccccEEEEEEecCHHHHHHHHh
Confidence 4320 0000 012368899999999998887765
No 157
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=94.15 E-value=0.1 Score=62.85 Aligned_cols=54 Identities=15% Similarity=0.233 Sum_probs=40.0
Q ss_pred CCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 406 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
...+|.|..++.|.+|+|+++|.|+++|.|++|+|++++.||.+|.|. ++.+..
T Consensus 290 ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~ 344 (456)
T PRK14356 290 IARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEE 344 (456)
T ss_pred ECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECC
Confidence 334566667777778888888888888888888888888888888776 565544
No 158
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=93.94 E-value=0.16 Score=52.89 Aligned_cols=32 Identities=22% Similarity=0.372 Sum_probs=17.7
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
++|+++++|+++++|. +|+|+.++.||.+|.|
T Consensus 109 ~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 141 (197)
T cd03360 109 AVINPDARIGDNVIINTGAVIGHDCVIGDFVHI 141 (197)
T ss_pred CEECCCCEECCCeEECCCCEECCCCEECCCCEE
Confidence 4555555555555553 5555555555555555
No 159
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=93.92 E-value=0.11 Score=62.90 Aligned_cols=39 Identities=15% Similarity=0.326 Sum_probs=22.7
Q ss_pred ccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++|+++|.|+++++|++|+|++++.||++|+|.++++..
T Consensus 287 ~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~ 325 (459)
T PRK14355 287 TRIGEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGD 325 (459)
T ss_pred CEECCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECC
Confidence 455556666666666666666666666666555555544
No 160
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=93.86 E-value=0.2 Score=51.33 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=43.0
Q ss_pred CCCceeeeccEEEec----cccCCceeCCCcEEEE-----cEECCCcEECCCCeEeccccCC
Q 001402 407 TTVSDIAASAVVLSS----KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~S----vL~~~v~V~~~s~Ve~-----S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
..+|.|..++.|..+ +|++++.|+++++|.. ++|++++.|+.+|+|.++.|..
T Consensus 22 G~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 83 (154)
T cd04650 22 GELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDYVTIGHNAVVHGAKVGN 83 (154)
T ss_pred CCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCcEEECcEECC
Confidence 335567777777765 8999999999999986 7899999999999998887755
No 161
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=93.77 E-value=0.17 Score=53.97 Aligned_cols=33 Identities=15% Similarity=0.305 Sum_probs=19.0
Q ss_pred eccccCCceeCCCcEEEEcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iI 452 (1084)
+|+|+.++.|+.+++|++|+|++++.||.+++|
T Consensus 71 ~siIg~~~~Ig~~a~i~g~vIG~~v~IG~ga~V 103 (196)
T PRK13627 71 DTIVGENGHIGHGAILHGCVIGRDALVGMNSVI 103 (196)
T ss_pred CCEECCCCEECCCcEEeeEEECCCCEECcCCcc
Confidence 445555555555555555555555555555555
No 162
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=93.75 E-value=0.12 Score=55.10 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=40.4
Q ss_pred CCceeeeccEEEec----cccCCceeCCCcEEEE-----cEECCCcEECCCCeEeccccCCC
Q 001402 408 TVSDIAASAVVLSS----KIAHGVSIGEDSLIYD-----SNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 408 ~g~~i~~~~~V~~S----vL~~~v~V~~~s~Ve~-----S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
.+|.|..++.|..+ +|+.+|.|+++++|.. |+|++++.||.+|+|.++.|..+
T Consensus 33 ~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~~~Ig~~a~i~g~vIG~~ 94 (196)
T PRK13627 33 AGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRD 94 (196)
T ss_pred CCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCCCEECCCcEEeeEEECCC
Confidence 35566666666553 6788888888888844 78999999999999999888663
No 163
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=93.72 E-value=0.13 Score=55.28 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=45.5
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecc
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~ 455 (1084)
.+..++.|..++.|.+|+|+.++.|++++.|.+|+|+.++.|+.++.|...
T Consensus 21 ~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~~ 71 (204)
T TIGR03308 21 KLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINAT 71 (204)
T ss_pred EeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECCC
Confidence 444567788889999999999999999999999999999999999999754
No 164
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.60 E-value=0.14 Score=48.58 Aligned_cols=24 Identities=13% Similarity=-0.097 Sum_probs=12.0
Q ss_pred EEcEECCCcEECCCCeEeccccCC
Q 001402 436 YDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 436 e~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++|+|++++.|+.+|.|.+++|..
T Consensus 61 ~~svi~~~~~i~~~~~lg~siIg~ 84 (101)
T cd05635 61 EDSIIEGYSNKQHDGFLGHSYLGS 84 (101)
T ss_pred CccEEcCCCEecCcCEEeeeEECC
Confidence 355555555555555554444433
No 165
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.58 E-value=0.18 Score=51.90 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=29.7
Q ss_pred ccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
++|+.++.|+++++|.+++|++++.||++|+|. ++.+..
T Consensus 73 v~Ig~~~~Ig~~~~i~~~~Ig~~v~Ig~~~~Ig~~~~I~~ 112 (161)
T cd03359 73 LHIGDYVFIGENCVVNAAQIGSYVHIGKNCVIGRRCIIKD 112 (161)
T ss_pred eEECCccEECCCCEEEeeEEcCCcEECCCCEEcCCCEECC
Confidence 367888888888888888888888888888774 455433
No 166
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=93.48 E-value=0.14 Score=56.39 Aligned_cols=90 Identities=21% Similarity=0.196 Sum_probs=60.4
Q ss_pred CeEEEEcCCcccccCcc---ccC--cCCCc-EEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhh
Q 001402 207 GGIFTMTGDVLPCFDAS---TMI--LPEDA-SCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELA 280 (1084)
Q Consensus 207 ~gVlV~sgD~I~~md~~---~~~--~~~a~-vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~ 280 (1084)
+-+.|+=+|+|+.-+.+ +|. ....+ -++...++|.++.+.|||+.....- +...| +|++|.|||+.++-|
T Consensus 124 EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi~v~ev~~e~v~kYGvi~~g~~~-~~~~~---~v~~~VEKP~~~~AP 199 (291)
T COG1210 124 EPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVIGVEEVPPEDVSKYGVIDPGEPV-EKGVY---KVKGMVEKPKPEEAP 199 (291)
T ss_pred CceEEEeCCeeecCCchHHHHHHHHHHHhCCcEEEEEECCHHHCcccceEecCccc-cCCeE---EEEEEEECCCCCCCC
Confidence 34777788888665432 232 12222 3567789999999999999833221 01123 799999999876533
Q ss_pred cccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 281 KNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 281 ~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
.-++.+|-|+|+++.+..|-
T Consensus 200 ---------Snlai~GRYil~p~IFd~L~ 219 (291)
T COG1210 200 ---------SNLAIVGRYVLTPEIFDILE 219 (291)
T ss_pred ---------cceeeeeeeecCHHHHHHHh
Confidence 23779999999999876443
No 167
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=93.38 E-value=0.23 Score=47.86 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=25.6
Q ss_pred eccccCCceeCCCcEE-EEcEECCCcEECCCCeEecccc
Q 001402 420 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIsg~~i 457 (1084)
+++|+++|.|+++++| .+|+|++++.|+.+|+|.+..+
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~ 54 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLY 54 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCC
Confidence 4667777777777777 3677777777777777665443
No 168
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.34 E-value=0.16 Score=48.33 Aligned_cols=39 Identities=18% Similarity=0.033 Sum_probs=26.4
Q ss_pred EEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecc
Q 001402 417 VVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 417 ~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~ 455 (1084)
.|.+|+|.+++.|..+++|.+|+|++++.||.++..+++
T Consensus 59 ~i~~svi~~~~~i~~~~~lg~siIg~~v~ig~~~~~~~~ 97 (101)
T cd05635 59 EVEDSIIEGYSNKQHDGFLGHSYLGSWCNLGAGTNNSDL 97 (101)
T ss_pred EECccEEcCCCEecCcCEEeeeEECCCCEECCCceeccc
Confidence 455666767777777777777777777777777666654
No 169
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=93.28 E-value=0.25 Score=51.16 Aligned_cols=51 Identities=12% Similarity=0.015 Sum_probs=32.6
Q ss_pred CceeeeccEEEec-----------cccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 409 VSDIAASAVVLSS-----------KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~S-----------vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|.|..++.|.++ .|++++.++.++.|.+++|++++.||.+|+|. ++.|..
T Consensus 44 ~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd~~~Ig~~a~I~~gv~Ig~ 106 (164)
T cd04646 44 NNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGNNNVFESKSFVGKNVIITD 106 (164)
T ss_pred CCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECCCCEEeCCCEECCCCEECC
Confidence 4455566666554 35566666667777777777777777777774 455544
No 170
>PLN02472 uncharacterized protein
Probab=93.27 E-value=0.16 Score=56.14 Aligned_cols=40 Identities=15% Similarity=0.274 Sum_probs=34.2
Q ss_pred ccccCCceeCCCcEEE-----------EcEECCCcEECCCCeEeccccCCC
Q 001402 421 SKIAHGVSIGEDSLIY-----------DSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-----------~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
.+|+.++.|+++|+|. +++|+++|.||.+|+|.+|.|..+
T Consensus 99 I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~v~IG~~s~L~~~~Igd~ 149 (246)
T PLN02472 99 ITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRYVTIGAYSLLRSCTIEPE 149 (246)
T ss_pred eEECCCCEECCCCEEeecCccccCCCCCcEECCCCEECCCcEECCeEEcCC
Confidence 3688888899988884 699999999999999999988663
No 171
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=93.18 E-value=0.037 Score=41.83 Aligned_cols=35 Identities=23% Similarity=0.254 Sum_probs=24.7
Q ss_pred eccccCCceeCCCcE-EEEcEECCCcEECCCCeEec
Q 001402 420 SSKIAHGVSIGEDSL-IYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~-Ve~S~l~~~v~IG~~~iIsg 454 (1084)
+++|+.+|.|++++. ..+|+|++++.||.+|.|.|
T Consensus 1 ~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~I~g 36 (36)
T PF00132_consen 1 NVVIGDNVIIGPNAVIGGGVVIGDNCVIGPGVVIGG 36 (36)
T ss_dssp TEEEETTEEEETTEEEETTEEE-TTEEEETTEEEES
T ss_pred CCEEcCCCEECCCcEecCCCEECCCCEEcCCCEECC
Confidence 356777888888877 44566777888888887764
No 172
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=92.90 E-value=0.22 Score=54.31 Aligned_cols=91 Identities=16% Similarity=0.125 Sum_probs=58.3
Q ss_pred CCeEEEEcCCc--ccccCccccC----cC-CCcEEEEEEEcC-hh---ccccceEEEECCCCCccccccccccceeEecC
Q 001402 206 EGGIFTMTGDV--LPCFDASTMI----LP-EDASCIITVPIT-LD---IASNHGVIVAAKDGILNENYALSLVDDLLQKP 274 (1084)
Q Consensus 206 p~gVlV~sgD~--I~~md~~~~~----~~-~a~vtv~a~pv~-~~---~As~hGV~~~d~~~~~~~~~~~~~v~~fleKP 274 (1084)
.+.++|+.||+ +-..++..+. .. ++++|+++.+++ .+ ....+||. .|+++ +|+.|.+||
T Consensus 90 ~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~---------~v~~~~~~~ 159 (239)
T cd02517 90 DDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLATPISDEEELFNPNVVKVV-LDKDG---------YALYFSRSP 159 (239)
T ss_pred CCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEEEcCCHHHccCCCCCEEE-ECCCC---------CEEEecCCC
Confidence 36899999997 3233444443 22 678888888874 34 34555654 56565 688998876
Q ss_pred ChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 275 NVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 275 s~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
..++= . ..++...++.+|+|+|+.+.+..+..
T Consensus 160 ~~~~~---~-~~~~~~~~~~~Giy~~~~~~~~~~~~ 191 (239)
T cd02517 160 IPYPR---D-SSEDFPYYKHIGIYAYRRDFLLRFAA 191 (239)
T ss_pred CCCCC---C-CCCCCceeEEEEEEEECHHHHHHHHh
Confidence 43210 0 01122457899999999999887754
No 173
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=92.88 E-value=0.21 Score=55.41 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=11.9
Q ss_pred cEECCCcEECCCCeEe-ccccCC
Q 001402 438 SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
++|+++|.||.||.|. |+.|.+
T Consensus 174 ViIgDnv~IGa~a~I~~GV~IG~ 196 (269)
T TIGR00965 174 TIIEDNCFIGARSEIVEGVIVEE 196 (269)
T ss_pred eEECCCCEECCCCEEcCCCEECC
Confidence 4556666666666554 444433
No 174
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=92.70 E-value=0.2 Score=52.00 Aligned_cols=36 Identities=28% Similarity=0.482 Sum_probs=23.2
Q ss_pred cCCceeCCCcEE-EEcEECCCcEECCCCeE-eccccCC
Q 001402 424 AHGVSIGEDSLI-YDSNISSGIQIGSLSIV-VGTNFPE 459 (1084)
Q Consensus 424 ~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI-sg~~i~~ 459 (1084)
...+.|+++++| .+|+|.++++||+||+| .++.+.+
T Consensus 116 ~~~v~IG~~~~Ig~~a~I~~gv~Ig~~~~VgagavV~~ 153 (169)
T cd03357 116 AKPITIGDNVWIGGGVIILPGVTIGDNSVIGAGSVVTK 153 (169)
T ss_pred cCCcEeCCCEEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 345666666666 56666777777777777 3555533
No 175
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=92.69 E-value=0.26 Score=54.81 Aligned_cols=13 Identities=31% Similarity=0.248 Sum_probs=5.2
Q ss_pred cccCCceeCCCcE
Q 001402 422 KIAHGVSIGEDSL 434 (1084)
Q Consensus 422 vL~~~v~V~~~s~ 434 (1084)
+|+.+|.||+++.
T Consensus 175 iIgDnv~IGa~a~ 187 (269)
T TIGR00965 175 IIEDNCFIGARSE 187 (269)
T ss_pred EECCCCEECCCCE
Confidence 3444444444333
No 176
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=92.50 E-value=0.2 Score=54.98 Aligned_cols=40 Identities=18% Similarity=0.395 Sum_probs=19.8
Q ss_pred eccccCCceeCCCcEEEE---------cEECCCcEECCCCeE-eccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIV-VGTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iI-sg~~i~~ 459 (1084)
+|+|+.+|+|++++.|.+ ++|++++.||.+|+| .++.|..
T Consensus 134 ~s~Ig~~~~Ig~~~~I~~~~~~~~~~~v~IGd~v~IG~gsvI~~g~~Ig~ 183 (231)
T TIGR03532 134 RATVGKNVHIGAGAVLAGVIEPPSAKPVVIEDNVLIGANAVILEGVRVGK 183 (231)
T ss_pred CcEECCCcEEcCCcEEccccccccCCCeEECCCcEECCCCEEcCCCEECC
Confidence 455555555555555542 445555555555554 2444433
No 177
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.36 E-value=0.24 Score=59.47 Aligned_cols=50 Identities=10% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCceeeeccEEE-eccccCCceeCCCcEEEEcEECCCcEECCCCeEecccc
Q 001402 408 TVSDIAASAVVL-SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 408 ~g~~i~~~~~V~-~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i 457 (1084)
.+|.|..++.|. +|+|+.+|.|++++.|.+++|++++.|+.++.+.++.|
T Consensus 308 ~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~~~i~~~~i 358 (446)
T PRK14353 308 EGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHLTYIGDATI 358 (446)
T ss_pred CCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCeeEEcCcEE
Confidence 344444444444 45666666666666665555555555554444443333
No 178
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=92.10 E-value=0.26 Score=58.88 Aligned_cols=50 Identities=22% Similarity=0.187 Sum_probs=33.2
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++.|..++.|.+|+|+++|.|+. ++|++|+|+++++|+.+|+|.++.|..
T Consensus 271 ~~~I~~~~~i~~~~i~~~~~I~~-~~i~~~~ig~~~~i~~~~~i~~~~ig~ 320 (430)
T PRK14359 271 GVRILGKSKIENSHIKAHSVIEE-SIIENSDVGPLAHIRPKSEIKNTHIGN 320 (430)
T ss_pred CCEECCCeEEEeeEECCCCEEec-cEEeCCEECCCCEECCCcEEeccEEcC
Confidence 44555566666677777777755 666777777777777777776666644
No 179
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=92.09 E-value=0.29 Score=47.21 Aligned_cols=44 Identities=18% Similarity=0.341 Sum_probs=25.3
Q ss_pred CceeeeccEE-EeccccCCceeCCCcEEEE----------------cEECCCcEECCCCeE
Q 001402 409 VSDIAASAVV-LSSKIAHGVSIGEDSLIYD----------------SNISSGIQIGSLSIV 452 (1084)
Q Consensus 409 g~~i~~~~~V-~~SvL~~~v~V~~~s~Ve~----------------S~l~~~v~IG~~~iI 452 (1084)
+|.|..++.| .+++|+++|.|++++.+++ ++|++++.||++|+|
T Consensus 22 ~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~v 82 (119)
T cd03358 22 NVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPRSKIYRKWELKGTTVKRGASIGANATI 82 (119)
T ss_pred CcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCccccccccccCCcEECCCcEECcCCEE
Confidence 3344444444 2567777777777776554 445555555555555
No 180
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=91.87 E-value=0.29 Score=50.91 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=13.2
Q ss_pred eccccCCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
+++|+.++.|++++.| .+|++.+++.||++|.|
T Consensus 126 ~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~i 159 (197)
T cd03360 126 GAVIGHDCVIGDFVHIAPGVVLSGGVTIGEGAFI 159 (197)
T ss_pred CCEECCCCEECCCCEECCCCEEcCCcEECCCCEE
Confidence 3444444444444444 23333333333333333
No 181
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.77 E-value=0.33 Score=59.09 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=36.5
Q ss_pred CCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 407 TTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 407 ~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
..+|.|..++.|.+|+|+++|.|+++++|++++|++++.||.++.|. ++.+..
T Consensus 292 g~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~ 345 (481)
T PRK14358 292 ADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGE 345 (481)
T ss_pred CCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECC
Confidence 34556666777777777777777777777777777777777777775 454433
No 182
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=91.68 E-value=0.32 Score=58.57 Aligned_cols=56 Identities=20% Similarity=0.277 Sum_probs=37.5
Q ss_pred eccCCCCceeeeccEEEeccccCCceeCCCcEEE-EcEECCCcEECCCCeEeccccCC
Q 001402 403 SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 403 ~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++.+..+|.|. ++++.+|+|+.+|.|++++.|. +|+|+++++||.++.|.++++..
T Consensus 300 ~~~ig~~~~I~-~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~ 356 (458)
T PRK14354 300 DSTIGDGVTIT-NSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGE 356 (458)
T ss_pred ccEECCCCEEE-EEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECC
Confidence 33444454444 4566777777777777777777 67777777777777776666544
No 183
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=91.59 E-value=0.45 Score=49.01 Aligned_cols=39 Identities=18% Similarity=0.218 Sum_probs=32.5
Q ss_pred ccccCCceeCCCcEEEEc-------------EECCCcEECCCCeEeccccCC
Q 001402 421 SKIAHGVSIGEDSLIYDS-------------NISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S-------------~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
..|+.+|.|+++++|..+ +|++++.||.+|+|.++.+..
T Consensus 43 v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~~~Ig~~~~i~~~~Ig~ 94 (161)
T cd03359 43 VSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDYVFIGENCVVNAAQIGS 94 (161)
T ss_pred eEECCCcEECCCCEEeCCccccCCCccccCeEECCccEECCCCEEEeeEEcC
Confidence 478999999999999854 688889999999988877766
No 184
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=91.29 E-value=0.26 Score=57.63 Aligned_cols=45 Identities=29% Similarity=0.265 Sum_probs=40.4
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCC
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSL 449 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~ 449 (1084)
.+..+|.|..++.|.+|++..+|+|+.++.|.+|+|+.+++||.+
T Consensus 281 ~ig~~~~I~~~~~i~~Sii~~~~~i~~~~~i~~sIi~~~~~ig~~ 325 (358)
T COG1208 281 VIGEGVTIGNGVEIKNSIIMDNVVIGHGSYIGDSIIGENCKIGAS 325 (358)
T ss_pred EECCCCEECCCcEEEeeEEEcCCEECCCCEEeeeEEcCCcEECCc
Confidence 444567888889999999999999999999999999999999983
No 185
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=90.84 E-value=0.66 Score=52.39 Aligned_cols=117 Identities=15% Similarity=0.233 Sum_probs=72.4
Q ss_pred CChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCc--cccC-------cCCCcEEEEEEEcChhccccceEEEEC
Q 001402 183 GPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDA--STMI-------LPEDASCIITVPITLDIASNHGVIVAA 253 (1084)
Q Consensus 183 g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~--~~~~-------~~~a~vtv~a~pv~~~~As~hGV~~~d 253 (1084)
.+++|+.=..+.+...+. .+-|+|+.+||++.=+. .+-+ ..+ .++.++++ |-.-.|.||-+...
T Consensus 88 nTApAIA~aa~~~~~~~~-----d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g-~lVTfGI~-Pt~PeTGYGYIe~G 160 (333)
T COG0836 88 NTAPAIALAALSATAEGG-----DALVLVLPSDHVIADEEAFLNAVKKAEKAAEEG-GIVTFGIP-PTRPETGYGYIETG 160 (333)
T ss_pred CcHHHHHHHHHHHHHhCC-----CcEEEEecCcceeccHHHHHHHHHHHHHHHHcC-CEEEEecC-CCCCccCcceeecC
Confidence 578887544443333221 34799999999866542 1111 233 32233332 22234569999886
Q ss_pred CCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHh
Q 001402 254 KDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLS 312 (1084)
Q Consensus 254 ~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~ 312 (1084)
+.-.+. ....|.+|.|||..+.-++ ....|.++-.+|+++|...+..+.++.+
T Consensus 161 ~~~~~~---~~~~V~~FvEKPd~etA~~---yv~sG~y~WNSGmF~Fra~~~l~e~~~~ 213 (333)
T COG0836 161 ESIAEN---GVYKVDRFVEKPDLETAKK---YVESGEYLWNSGMFLFRASVFLEELKKH 213 (333)
T ss_pred cccccC---CceEeeeeeeCCCHHHHHH---HHHcCceEeeccceEEEHHHHHHHHHhh
Confidence 642111 2237899999999764322 2457888999999999999987777755
No 186
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=90.72 E-value=0.49 Score=52.97 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=7.0
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
++|++++.||.+|.|
T Consensus 177 viIgDnv~IGa~s~I 191 (272)
T PRK11830 177 VIIEDNCFIGARSEV 191 (272)
T ss_pred eEEcCCCEECCCCEE
Confidence 344444444444444
No 187
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=90.62 E-value=0.58 Score=41.02 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=27.6
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeEeccc
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIsg~~ 456 (1084)
|++++++.|+++++|.. ++|++++.|+.+|.|.+..
T Consensus 1 ~~ig~~~~i~~~~~i~~~~~Ig~~~~I~~~~~i~~~~ 37 (78)
T cd00208 1 VFIGEGVKIHPKAVIRGPVVIGDNVNIGPGAVIGAAT 37 (78)
T ss_pred CEECCCeEECCCCEEeCcEEECCCCEECCCCEEEecc
Confidence 45677888888888876 8888888888888887643
No 188
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=90.54 E-value=0.54 Score=49.64 Aligned_cols=48 Identities=27% Similarity=0.431 Sum_probs=31.5
Q ss_pred cCCceeCCCcEE-EEcEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcEeeeee
Q 001402 424 AHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 483 (1084)
Q Consensus 424 ~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~ 483 (1084)
...+.|+++++| .+++|.++++||++|+|. ++.|.+ .||+++.+...|
T Consensus 127 ~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~------------di~~~~i~~G~P 176 (183)
T PRK10092 127 GKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTK------------DVPDNVVVGGNP 176 (183)
T ss_pred cCCeEECCCcEECCCCEECCCCEECCCCEECCCCEEcc------------ccCCCcEEEecC
Confidence 456777777777 677778888888888874 444433 267777544333
No 189
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=90.35 E-value=0.66 Score=43.81 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=4.9
Q ss_pred ccCCceeCCCcEE
Q 001402 423 IAHGVSIGEDSLI 435 (1084)
Q Consensus 423 L~~~v~V~~~s~V 435 (1084)
|+++|.|+++++|
T Consensus 24 IG~~~~Ig~~~~i 36 (109)
T cd04647 24 IGDNVLIGPNVTI 36 (109)
T ss_pred ECCCCEECCCCEE
Confidence 3333333333333
No 190
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=90.02 E-value=0.74 Score=47.69 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=32.3
Q ss_pred CceeeeccEEEe----ccccCCceeCCCcEEEEcE-----------ECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLS----SKIAHGVSIGEDSLIYDSN-----------ISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~----SvL~~~v~V~~~s~Ve~S~-----------l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|.|..++.|.. ++|+.+|.|+++++|.++. |++++.|+.+|.|.++.|..
T Consensus 23 ~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~~~i~~~~~i~~~~IGd 88 (164)
T cd04646 23 GTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSNNVFEVGCKCEALKIGN 88 (164)
T ss_pred CCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCCCEECCCcEEEeeEECC
Confidence 444555555543 3788888888888887763 45555555566666666544
No 191
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=89.95 E-value=0.78 Score=47.54 Aligned_cols=39 Identities=23% Similarity=0.302 Sum_probs=27.1
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeEeccccCC
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
..|+.++.|++++.|.. ++|++++.||.+|.|.++.|..
T Consensus 65 v~Ig~~~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~~~Ig~ 104 (167)
T cd00710 65 VWIGKNVSIAHGAIVHGPAYIGDNCFIGFRSVVFNAKVGD 104 (167)
T ss_pred EEECCCceECCCCEEeCCEEECCCCEECCCCEEECCEECC
Confidence 45666777777777765 7777777777777777665544
No 192
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=89.41 E-value=0.71 Score=49.27 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=3.7
Q ss_pred eEeCCCcEe
Q 001402 471 FMLPDRHCL 479 (1084)
Q Consensus 471 ~~iP~g~~i 479 (1084)
+.|.++++|
T Consensus 62 ~~I~~~~~i 70 (205)
T cd03352 62 VIIHSGAVI 70 (205)
T ss_pred cEECCCCEE
Confidence 444444433
No 193
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=89.41 E-value=1 Score=45.20 Aligned_cols=40 Identities=23% Similarity=0.292 Sum_probs=26.4
Q ss_pred eccccCCceeCCCcEEE---------EcEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLIY---------DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve---------~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++|+.+|.|++++.|. +++|++++.||.+++|. ++.|.+
T Consensus 49 ~~~IG~~~~I~~~~~igg~~~~~~~~~v~Ig~~~~Ig~~a~I~~gv~Ig~ 98 (139)
T cd03350 49 CAQIGKNVHLSAGAVIGGVLEPLQATPVIIEDDVFIGANCEVVEGVIVGK 98 (139)
T ss_pred CCEECCCCEECCCCEECCcccccccCCeEECCCCEECCCCEECCCCEECC
Confidence 45666677777777664 35677777777777774 566655
No 194
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=89.35 E-value=0.66 Score=48.78 Aligned_cols=6 Identities=17% Similarity=0.268 Sum_probs=2.1
Q ss_pred cEECCC
Q 001402 444 IQIGSL 449 (1084)
Q Consensus 444 v~IG~~ 449 (1084)
+.||.+
T Consensus 142 ~~i~~~ 147 (201)
T TIGR03570 142 VHIAPG 147 (201)
T ss_pred CEECCC
Confidence 333333
No 195
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=89.27 E-value=0.61 Score=53.80 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=20.1
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
+++|+.+|.|+++++|. +|+|++++.|+++|+|.
T Consensus 139 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~vIg 173 (324)
T TIGR01853 139 DVVIGDGSRIHPNVVIYERVQLGKNVIIHSGAVIG 173 (324)
T ss_pred cceeCCCceECCCcEECCCCEECCCCEECCCcEEC
Confidence 45555555555666664 56666666666666663
No 196
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=89.12 E-value=0.77 Score=52.97 Aligned_cols=46 Identities=20% Similarity=0.262 Sum_probs=31.0
Q ss_pred CceeeeccEEE-eccccCCceeCCCcEEE---------------------EcEECCCcEECCCCeEec
Q 001402 409 VSDIAASAVVL-SSKIAHGVSIGEDSLIY---------------------DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 409 g~~i~~~~~V~-~SvL~~~v~V~~~s~Ve---------------------~S~l~~~v~IG~~~iIsg 454 (1084)
+|.|..++.|. +++|+.+|.|+++++|. .++|+++|.||.||.|.+
T Consensus 145 ~~~I~~~~~I~~~~~IG~~~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~~~I~r 212 (324)
T TIGR01853 145 GSRIHPNVVIYERVQLGKNVIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGANTTIDR 212 (324)
T ss_pred CceECCCcEECCCCEECCCCEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCCCEEec
Confidence 44455555554 67777777777777772 467777788888877743
No 197
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=89.01 E-value=0.88 Score=47.35 Aligned_cols=69 Identities=17% Similarity=0.238 Sum_probs=32.2
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEec-cccCCCC-CCC-CCCCcceEeCCCcEeeeeecCCcceEEEEEe
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPEEA-GST-AEDSFRFMLPDRHCLWEVPLVGCTERVLVYC 495 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg-~~i~~~~-~~~-~~~~~~~~iP~g~~i~~v~l~~~~~~v~~~~ 495 (1084)
.|+++|+||.+++|.-|.|++++-||=|++|.+ +.|.++. .+. .-=+..-.+|++. +++ |...++.+..
T Consensus 74 ~IG~~vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~~~----L~~-G~Pak~~r~l 145 (176)
T COG0663 74 TIGDDVTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPGGS----LVV-GSPAKVVRPL 145 (176)
T ss_pred EECCCcEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCCCe----Eee-cCcceeeecC
Confidence 455555555555555555555555555555443 4443321 000 0000123566665 443 5556666654
No 198
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=88.76 E-value=0.8 Score=48.67 Aligned_cols=52 Identities=12% Similarity=0.177 Sum_probs=36.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEE
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITV 237 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~ 237 (1084)
.+.|++++++..+..+... +++.++|+.||+|...++..|. ..++++|++..
T Consensus 91 ~~~Gta~al~~a~~~i~~~------~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~ 146 (200)
T cd02508 91 WYRGTADAIYQNLDYIERS------DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK 146 (200)
T ss_pred cccCcHHHHHHHHHHHHhC------CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh
Confidence 4568999988777655431 2468999999999888877774 24556655443
No 199
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=88.76 E-value=0.93 Score=47.64 Aligned_cols=15 Identities=13% Similarity=0.155 Sum_probs=5.5
Q ss_pred EcEECCCcEECCCCe
Q 001402 437 DSNISSGIQIGSLSI 451 (1084)
Q Consensus 437 ~S~l~~~v~IG~~~i 451 (1084)
+|+|..++.||.+|.
T Consensus 129 ~~~i~~~~~ig~~~~ 143 (201)
T TIGR03570 129 GAIVEHDCVIGDYVH 143 (201)
T ss_pred CCEEcCCCEECCCCE
Confidence 333333333333333
No 200
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=88.36 E-value=1.2 Score=42.13 Aligned_cols=30 Identities=30% Similarity=0.485 Sum_probs=13.9
Q ss_pred ccCCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 423 IAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 423 L~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
...++.|+++++| .+++|.+++.||++|+|
T Consensus 55 ~~~~~~Ig~~~~ig~~~~i~~~~~ig~~~~i 85 (109)
T cd04647 55 TSAPIVIGDDVWIGANVVILPGVTIGDGAVV 85 (109)
T ss_pred ccCCeEECCCCEECCCCEEcCCCEECCCCEE
Confidence 3344444444444 44444444455554444
No 201
>PLN02694 serine O-acetyltransferase
Probab=88.34 E-value=1 Score=50.63 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=6.1
Q ss_pred EECCCcEECCCCeE
Q 001402 439 NISSGIQIGSLSIV 452 (1084)
Q Consensus 439 ~l~~~v~IG~~~iI 452 (1084)
+|+++|.||.||+|
T Consensus 214 iIGd~V~IGagA~I 227 (294)
T PLN02694 214 KIGDGVLIGAGATI 227 (294)
T ss_pred EECCCeEECCeeEE
Confidence 44444444444444
No 202
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=88.34 E-value=0.45 Score=35.92 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=17.6
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
.|+.+|.|+.+|.| ...|++++.|+.|+.|+
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd~~~i~~g~~I~ 33 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGDGVIIGAGVVIT 33 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-TTEEE-TTEEEE
T ss_pred EECCCEEECccccc-CCEEcCCCEECCCCEEc
Confidence 45677888888887 46666666666666664
No 203
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=88.33 E-value=1.8 Score=43.87 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=22.1
Q ss_pred ccccCCceeCCCcEEEEcEECCC----cEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSG----IQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~----v~IG~~~iIs 453 (1084)
++|+.+|.|++++.|. +.+.++ +.||++|.|-
T Consensus 48 a~Ighd~~IG~~~~I~-~~l~G~~~~pV~IG~~~~IG 83 (147)
T cd04649 48 VIVGKGSDVGGGASIM-GTLSGGGNNVISIGKRCLLG 83 (147)
T ss_pred EEECCCCEECCCCEEE-EECCCCcccCEEECCCCEEC
Confidence 6777777777777777 665556 6666666664
No 204
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=88.13 E-value=1.1 Score=54.57 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=19.1
Q ss_pred EeccccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 419 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
.+|+|+.+++|+..+.|.+|+|+.++.||.++++.
T Consensus 356 ~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~ 390 (482)
T PRK14352 356 KNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFV 390 (482)
T ss_pred cccEECCCcEEccCceecccEECCCcEECCCcEEe
Confidence 34455555555555555555556666666655554
No 205
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=87.93 E-value=0.64 Score=55.88 Aligned_cols=55 Identities=18% Similarity=0.194 Sum_probs=36.4
Q ss_pred ccCCCCceeeeccEEEeccccCCceeCCCcEE-EEcEECCCcEECCCCeEeccccCC
Q 001402 404 IPATTVSDIAASAVVLSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 404 ~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+.+..+|.| .++.|.+|+|++++.|++++.| ++|+|+++++||.+|.+.++.|.+
T Consensus 291 s~Ig~~~~I-~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~ 346 (448)
T PRK14357 291 CEIGNNVKI-IRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGE 346 (448)
T ss_pred cEECCCCEE-eeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcC
Confidence 333445434 3346667777788888888777 447778888888877776666554
No 206
>PLN02694 serine O-acetyltransferase
Probab=87.75 E-value=0.69 Score=52.06 Aligned_cols=36 Identities=36% Similarity=0.494 Sum_probs=27.8
Q ss_pred EEeccccCCceeCCCcEE-EEcEECCCcEECCCCeEe
Q 001402 418 VLSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 418 V~~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs 453 (1084)
..+++|+.+|.||.++.| .++.|++++.||.|++|.
T Consensus 210 ~r~piIGd~V~IGagA~Ilggi~IGd~a~IGAgSVV~ 246 (294)
T PLN02694 210 DRHPKIGDGVLIGAGATILGNVKIGEGAKIGAGSVVL 246 (294)
T ss_pred CCccEECCCeEECCeeEECCCCEECCCCEECCCCEEC
Confidence 456788888888888877 677777777777777774
No 207
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=87.65 E-value=1.1 Score=49.20 Aligned_cols=35 Identities=17% Similarity=0.462 Sum_probs=27.0
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEec
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg 454 (1084)
+++|+.+|.|++++.|. +|+|++++.||.+|.|.+
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~~~Ig~~~~I~~ 151 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKNVHIGAGAVLAG 151 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCCcEEcCCcEEcc
Confidence 45667777777777774 888888999999998875
No 208
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=87.58 E-value=1.5 Score=48.94 Aligned_cols=16 Identities=25% Similarity=0.069 Sum_probs=7.4
Q ss_pred ccccCCceeCCCcEEE
Q 001402 421 SKIAHGVSIGEDSLIY 436 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve 436 (1084)
.+|+.+|.|+++++|.
T Consensus 81 v~IG~~~~I~e~~~I~ 96 (262)
T PRK05289 81 LVIGDNNTIREFVTIN 96 (262)
T ss_pred EEECCCCEECCCeEEe
Confidence 3444444444444444
No 209
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=86.83 E-value=1.5 Score=49.55 Aligned_cols=34 Identities=18% Similarity=0.337 Sum_probs=25.8
Q ss_pred EeccccCCceeCCCcEEEEcEECCC----cEECCCCeEe
Q 001402 419 LSSKIAHGVSIGEDSLIYDSNISSG----IQIGSLSIVV 453 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~Ve~S~l~~~----v~IG~~~iIs 453 (1084)
..++|+.+|.||.++.| +++|.++ |+||++|.|-
T Consensus 223 sGavIGhds~IG~gasI-g~tLsGg~~~~V~IGe~~lIG 260 (341)
T TIGR03536 223 AGVMVGKGSDLGGGCST-MGTLSGGGNIVISVGEGCLLG 260 (341)
T ss_pred cCCEECCCCEECCCCEE-eEEEeCCCceeEEECCCcEEC
Confidence 35677888888888888 7777777 7777777763
No 210
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=86.77 E-value=1.4 Score=45.53 Aligned_cols=15 Identities=27% Similarity=0.543 Sum_probs=6.8
Q ss_pred EECCCcEECCCCeEe
Q 001402 439 NISSGIQIGSLSIVV 453 (1084)
Q Consensus 439 ~l~~~v~IG~~~iIs 453 (1084)
+|+++|.||.+|.|.
T Consensus 115 ~Ig~~v~Ig~~a~I~ 129 (162)
T TIGR01172 115 TVGEGVMIGAGAKVL 129 (162)
T ss_pred EECCCcEEcCCCEEE
Confidence 444444444444443
No 211
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=85.98 E-value=1.8 Score=44.75 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=13.7
Q ss_pred cccCCceeCCCcEEEE-cEECCCcEECCCCeE
Q 001402 422 KIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 452 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iI 452 (1084)
+|+.+|.|+++++|.. ++|++++.||.+++|
T Consensus 115 ~Ig~~v~Ig~~a~I~~~v~IG~~~~Iga~s~V 146 (162)
T TIGR01172 115 TVGEGVMIGAGAKVLGNIEVGENAKIGANSVV 146 (162)
T ss_pred EECCCcEEcCCCEEECCcEECCCCEECCCCEE
Confidence 4444444444444433 334444444444443
No 212
>PLN02357 serine acetyltransferase
Probab=85.73 E-value=1.4 Score=51.00 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=12.0
Q ss_pred cEECCCcEECCCCeEe-ccccCC
Q 001402 438 SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
++|+++|.||.||+|. ++.|..
T Consensus 279 piIGd~V~IGagA~IlggV~IGd 301 (360)
T PLN02357 279 PKIGDGVLIGAGTCILGNITIGE 301 (360)
T ss_pred ceeCCCeEECCceEEECCeEECC
Confidence 4566666666665554 344433
No 213
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=85.23 E-value=1.1 Score=49.89 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=44.3
Q ss_pred eeccCCCCceeeeccEEEeccccCCceeCCCcEEEE--------------cEECCCcEECCCCeEeccccCC
Q 001402 402 CSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYD--------------SNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 402 ~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~--------------S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
.++.+-.++.|.+.++|.|||++=+++||.+|.||- .+++.+|.++.-|+|.++++-.
T Consensus 322 ~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~~s~~~~~~a~Tilga~v~v~dev~v~~s~vlp 393 (407)
T KOG1460|consen 322 RESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVEPSPNLPFAALTILGADVSVEDEVIVLNSIVLP 393 (407)
T ss_pred eeeeeccCcEeeccceEEeeeecccccccceeeecccccccCCCCCcceeEEecccceecceeEEeeeeEec
Confidence 344444466788889999999999999998888886 5666788888888888877643
No 214
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=85.01 E-value=1.6 Score=49.84 Aligned_cols=9 Identities=0% Similarity=0.217 Sum_probs=3.9
Q ss_pred eEeCCCcEe
Q 001402 471 FMLPDRHCL 479 (1084)
Q Consensus 471 ~~iP~g~~i 479 (1084)
+.|-+|+.|
T Consensus 172 v~I~~GavI 180 (338)
T COG1044 172 VIIHSGAVI 180 (338)
T ss_pred eEECCCCEE
Confidence 444444443
No 215
>PLN02739 serine acetyltransferase
Probab=84.72 E-value=1.7 Score=50.11 Aligned_cols=16 Identities=19% Similarity=0.472 Sum_probs=8.7
Q ss_pred cEECCCcEECCCCeEe
Q 001402 438 SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs 453 (1084)
.+|+++|.||.|++|.
T Consensus 258 p~IGd~V~IGagA~Il 273 (355)
T PLN02739 258 PKIGDGALLGACVTIL 273 (355)
T ss_pred cEECCCCEEcCCCEEe
Confidence 4555555555555554
No 216
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=84.72 E-value=2.3 Score=51.67 Aligned_cols=99 Identities=11% Similarity=0.128 Sum_probs=62.8
Q ss_pred CeEEEEcCCcccccC--ccccC------cCCCcEEEEEEEcChhccccceEEEECCCCCc---cccccccccceeEecCC
Q 001402 207 GGIFTMTGDVLPCFD--ASTMI------LPEDASCIITVPITLDIASNHGVIVAAKDGIL---NENYALSLVDDLLQKPN 275 (1084)
Q Consensus 207 ~gVlV~sgD~I~~md--~~~~~------~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~---~~~~~~~~v~~fleKPs 275 (1084)
+-|+|+.+||+..=. +...+ .....++.++++ |-.=.|.||-+..++.-.. +..| .|..|.|||+
T Consensus 111 ~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lvt~GI~-Pt~PeTgyGYI~~g~~~~~~~~~~~~---~V~~F~EKPd 186 (478)
T PRK15460 111 PLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLVTFGIV-PDLPETGYGYIRRGEVSAGEQDTVAF---EVAQFVEKPN 186 (478)
T ss_pred CeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEEEEecC-CCCCCCCCCeEEeCCccccccccCce---EeeEEEeCCC
Confidence 478899999974322 11111 112334444443 2223567999998754100 0122 6899999999
Q ss_pred hhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHHh
Q 001402 276 VDELAKNHAILDDGRALLDTGIIAVRGKAWEELVMLS 312 (1084)
Q Consensus 276 ~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~ 312 (1084)
.+.-.+ ...+|..+=.+|+|+|+.+++.+.++.+
T Consensus 187 ~~tA~~---yl~~G~y~WNsGiF~~~a~~~l~~~~~~ 220 (478)
T PRK15460 187 LETAQA---YVASGEYYWNSGMFLFRAGRYLEELKKY 220 (478)
T ss_pred HHHHHH---HHHcCCEEEecceeheeHHHHHHHHHHH
Confidence 764321 2457888999999999999988888755
No 217
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=84.58 E-value=1.7 Score=48.81 Aligned_cols=16 Identities=25% Similarity=0.524 Sum_probs=9.1
Q ss_pred cEECCCcEECCCCeEe
Q 001402 438 SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs 453 (1084)
++|+++|.||.||+|.
T Consensus 194 p~IGd~V~IGaga~Il 209 (273)
T PRK11132 194 PKIREGVMIGAGAKIL 209 (273)
T ss_pred CEECCCcEEcCCCEEc
Confidence 4555555565555554
No 218
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=83.43 E-value=2.2 Score=49.67 Aligned_cols=42 Identities=19% Similarity=0.282 Sum_probs=22.7
Q ss_pred eeeccEEEecc-ccCCceeCCCcEEE--------------------EcEECCCcEECCCCeEe
Q 001402 412 IAASAVVLSSK-IAHGVSIGEDSLIY--------------------DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 412 i~~~~~V~~Sv-L~~~v~V~~~s~Ve--------------------~S~l~~~v~IG~~~iIs 453 (1084)
|..+++|.+++ |+.+|.|+++++|. .++|+++|.||.||.|.
T Consensus 157 I~~~~~I~~~~~Ig~~~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~~I~ 219 (343)
T PRK00892 157 LHANVTIYHAVRIGNRVIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANTTID 219 (343)
T ss_pred eCCCeEEcCCCEECCCCEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCcEEe
Confidence 33444443333 55666666666663 35566666666666654
No 219
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=83.23 E-value=2.7 Score=43.83 Aligned_cols=46 Identities=28% Similarity=0.375 Sum_probs=27.8
Q ss_pred ceeeeccEEEeccccCCceeCCCcEEEE-cEECCCcEECCCCeEecc
Q 001402 410 SDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 410 ~~i~~~~~V~~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIsg~ 455 (1084)
+.|..++.|.-+.|+.+|.||=||+|-+ ++|+.++.||.|++|+..
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~ 125 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPG 125 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCCcEECCCcEEccCCcccCC
Confidence 4455555555566666666666666666 666666666666666543
No 220
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=82.83 E-value=2.7 Score=47.13 Aligned_cols=44 Identities=23% Similarity=0.317 Sum_probs=20.7
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEE-cEECCCcEECCCCeE
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 452 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iI 452 (1084)
++.|..++.|+.+.+..++.|++++.|.. |.|++++.||+||.|
T Consensus 115 ga~Ig~gavI~p~~V~iGa~Ig~gt~I~~~a~IG~~a~IG~nv~I 159 (272)
T PRK11830 115 GAYIAPNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKNVHL 159 (272)
T ss_pred CCEECCCcEEEEEEECCCCEECCCcEEccccEECCCCEECCCcEE
Confidence 44555566665554555555555554433 333333344444433
No 221
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=82.61 E-value=3.2 Score=42.10 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=33.0
Q ss_pred eeeeccEEEe-ccccCCceeCCCcEEE-----EcEECCCcEECCCCeEe
Q 001402 411 DIAASAVVLS-SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 411 ~i~~~~~V~~-SvL~~~v~V~~~s~Ve-----~S~l~~~v~IG~~~iIs 453 (1084)
.|..|+.|.. +++..++.|++++.|. +|.|+.++.||.+|.|.
T Consensus 15 ~IG~GtvI~~gavV~~~a~IG~~~iIn~~ig~~a~Ighd~~IG~~~~I~ 63 (147)
T cd04649 15 YLAEGTTVMHEGFVNFNAGTLGNCMVEGRISSGVIVGKGSDVGGGASIM 63 (147)
T ss_pred EECCCcEECCCCEEccCCEECCCeEECCcccCCEEECCCCEECCCCEEE
Confidence 4556666655 7888888888888886 46778888888888887
No 222
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=82.54 E-value=2.7 Score=45.15 Aligned_cols=27 Identities=30% Similarity=0.545 Sum_probs=14.8
Q ss_pred ceeCCCcEE-EEcEECCCcEECCCCeEe
Q 001402 427 VSIGEDSLI-YDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 427 v~V~~~s~V-e~S~l~~~v~IG~~~iIs 453 (1084)
++||++++| .+|+|.++++||++|+|-
T Consensus 132 i~IGd~v~IG~~~~I~~gv~IG~~~vIg 159 (203)
T PRK09527 132 ITIGNNVWIGSHVVINPGVTIGDNSVIG 159 (203)
T ss_pred eEECCCcEECCCCEEcCCCEECCCCEEC
Confidence 445555555 344555666666666654
No 223
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=81.72 E-value=3.1 Score=46.56 Aligned_cols=35 Identities=14% Similarity=-0.018 Sum_probs=21.1
Q ss_pred ccccCCceeCCCcEEE-------------EcEECCCcEECCCCeEecc
Q 001402 421 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-------------~S~l~~~v~IG~~~iIsg~ 455 (1084)
++|+.+|.|+++++|. +++|++++.|+++|.|.+.
T Consensus 51 ~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~IG~~~~I~e~~~I~~~ 98 (262)
T PRK05289 51 TTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVIGDNNTIREFVTINRG 98 (262)
T ss_pred cEECCCCEEcccceecCCceeecccCCCCeEEECCCCEECCCeEEecc
Confidence 5556666666666664 3566666666666666543
No 224
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=81.28 E-value=1.9 Score=50.19 Aligned_cols=9 Identities=22% Similarity=0.523 Sum_probs=6.3
Q ss_pred eeEecCChh
Q 001402 269 DLLQKPNVD 277 (1084)
Q Consensus 269 ~fleKPs~~ 277 (1084)
.|+++|...
T Consensus 39 sFl~~~k~~ 47 (343)
T PRK00892 39 SFLANPKYR 47 (343)
T ss_pred EEEcCchhH
Confidence 488888754
No 225
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=81.28 E-value=1.7 Score=50.95 Aligned_cols=41 Identities=32% Similarity=0.429 Sum_probs=37.2
Q ss_pred eccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCC
Q 001402 420 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
+.+|+.+|.||++|+|.+|.|++++.|-+.|+|.++.|..+
T Consensus 286 ~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~ 326 (460)
T COG1207 286 NTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG 326 (460)
T ss_pred eEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC
Confidence 56888999999999999999999999999999999888764
No 226
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=80.90 E-value=3.1 Score=46.34 Aligned_cols=33 Identities=24% Similarity=0.303 Sum_probs=18.3
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
++++++|.|+++++|. +++|.+++.||++|.|.
T Consensus 24 ~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~ 57 (255)
T PRK12461 24 AVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIH 57 (255)
T ss_pred CEECCCCEECCCcEEccCCEEeCCCEECCCCEEc
Confidence 4455555555555554 55555555555555553
No 227
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=80.74 E-value=3.4 Score=45.88 Aligned_cols=34 Identities=15% Similarity=0.024 Sum_probs=21.0
Q ss_pred ccccCCceeCCCcEEE-------------EcEECCCcEECCCCeEec
Q 001402 421 SKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-------------~S~l~~~v~IG~~~iIsg 454 (1084)
++|+.+|.|+++++|. +++|++++.||++|.|.+
T Consensus 48 v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~Ig~~~~I~~ 94 (254)
T cd03351 48 TTIGKNNRIFPFASIGEAPQDLKYKGEPTRLEIGDNNTIREFVTIHR 94 (254)
T ss_pred eEECCCCEEecceeecCcccceeecCCCceEEECCCCEECCccEEec
Confidence 5556666666666664 566666666666666653
No 228
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=80.44 E-value=3.7 Score=45.61 Aligned_cols=10 Identities=20% Similarity=0.059 Sum_probs=3.5
Q ss_pred cCCceeCCCc
Q 001402 424 AHGVSIGEDS 433 (1084)
Q Consensus 424 ~~~v~V~~~s 433 (1084)
+.+|.|++++
T Consensus 80 G~~~~I~~~~ 89 (254)
T TIGR01852 80 GDNNTIREFV 89 (254)
T ss_pred CCCCEECCCC
Confidence 3333333333
No 229
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=80.36 E-value=2.5 Score=45.56 Aligned_cols=67 Identities=12% Similarity=0.157 Sum_probs=49.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcCh-----------hcc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITL-----------DIA 244 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~-----------~~A 244 (1084)
...|+.++|+...-.+ ++.++|+.||+|..++...+. ..++.+|++..+++. ...
T Consensus 85 ~~~gt~~al~~~~~~i----------~~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~ 154 (214)
T cd04198 85 EDMGTADSLRHIRKKI----------KKDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPPVSSEQKGGKGKSKKA 154 (214)
T ss_pred CCcChHHHHHHHHhhc----------CCCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccCCcccccCCcccccCC
Confidence 4468888776544432 346999999999999988774 467889998887653 234
Q ss_pred ccceEEEECCCC
Q 001402 245 SNHGVIVAAKDG 256 (1084)
Q Consensus 245 s~hGV~~~d~~~ 256 (1084)
.+++++.+|++.
T Consensus 155 ~~~~~~~~d~~~ 166 (214)
T cd04198 155 DERDVIGLDEKT 166 (214)
T ss_pred CCCceEEEcCCC
Confidence 578999999874
No 230
>PLN02357 serine acetyltransferase
Probab=80.20 E-value=2.6 Score=48.84 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=25.8
Q ss_pred EeccccCCceeCCCcEE-EEcEECCCcEECCCCeEec
Q 001402 419 LSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIsg 454 (1084)
.+++|+.+|.||.|+.| .+..|++++.||.+++|.+
T Consensus 277 ~~piIGd~V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 277 RHPKIGDGVLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred cCceeCCCeEECCceEEECCeEECCCCEECCCCEECc
Confidence 35678888888888766 4666777777777777743
No 231
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=80.05 E-value=4.5 Score=42.99 Aligned_cols=25 Identities=36% Similarity=0.522 Sum_probs=10.8
Q ss_pred eeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 428 SIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 428 ~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
.|+++++| .++.|.++++||++|+|
T Consensus 132 ~Ig~~~~ig~~~~i~~g~~Ig~~~~I 157 (192)
T PRK09677 132 VIGQRVWIGENVTILPGVSIGNGCIV 157 (192)
T ss_pred EEcCCcEECCCCEEcCCCEECCCCEE
Confidence 34444444 23334444444444444
No 232
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=79.97 E-value=4.7 Score=41.81 Aligned_cols=38 Identities=29% Similarity=0.489 Sum_probs=21.8
Q ss_pred cccCCceeCCCcEEE-------------------EcEECCCcEECCCCeEe-ccccCC
Q 001402 422 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve-------------------~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.|+.+|.|++++.|. .++|++++.||.+|+|. ++.|.+
T Consensus 84 ~IG~~v~Ig~~~~I~~~~h~~~~~~~~~~~~~~~~v~IG~~~~Ig~~a~I~~gv~Ig~ 141 (169)
T cd03357 84 TIGDNVLIGPNVQIYTAGHPLDPEERNRGLEYAKPITIGDNVWIGGGVIILPGVTIGD 141 (169)
T ss_pred EECCCCEECCCCEEEeCCCCCChhHccccceecCCcEeCCCEEECCCCEEeCCCEECC
Confidence 566666666666664 34556666666666554 344433
No 233
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=79.38 E-value=3.7 Score=44.67 Aligned_cols=88 Identities=22% Similarity=0.271 Sum_probs=51.5
Q ss_pred CCeEEEEcCCc--ccccCccccC----c-CCCcEEEEEEEcCh-hc---cccceEEEECCCCCccccccccccceeEecC
Q 001402 206 EGGIFTMTGDV--LPCFDASTMI----L-PEDASCIITVPITL-DI---ASNHGVIVAAKDGILNENYALSLVDDLLQKP 274 (1084)
Q Consensus 206 p~gVlV~sgD~--I~~md~~~~~----~-~~a~vtv~a~pv~~-~~---As~hGV~~~d~~~~~~~~~~~~~v~~fleKP 274 (1084)
.+.++|+.||+ +-..++..+. . +.++++.+..+++. .. -..+|| +++++| +|+.|.+||
T Consensus 89 ~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~g---------~v~~~~~~~ 158 (238)
T PRK13368 89 ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLCAPISTEEEFESPNVVKV-VVDKNG---------DALYFSRSP 158 (238)
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEEEEcCCHHHhcCcCCCEE-EECCCC---------CEEEeeCCC
Confidence 46899999997 3344444442 2 23466555655543 22 233455 445556 688998776
Q ss_pred ChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 275 NVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 275 s~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
... +. +- .+...+..+|+|+|+.+++..+
T Consensus 159 ~~~--~~-~~--~~~~~~~n~giy~~~~~~l~~~ 187 (238)
T PRK13368 159 IPS--RR-DG--ESARYLKHVGIYAFRRDVLQQF 187 (238)
T ss_pred CCC--CC-CC--CCCceeEEEEEEEeCHHHHHHH
Confidence 321 10 00 0223478999999999988763
No 234
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=79.32 E-value=4.3 Score=42.93 Aligned_cols=38 Identities=18% Similarity=0.408 Sum_probs=22.2
Q ss_pred cccCCceeCCCcEEE-------------------EcEECCCcEECCCCeEe-ccccCC
Q 001402 422 KIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve-------------------~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.|+.+|.|++++.|. ..+|++++.||.+|+|. ++.|.+
T Consensus 95 ~IGd~v~I~~~v~i~t~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 152 (183)
T PRK10092 95 RIGDNCMLAPGVHIYTATHPLDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 152 (183)
T ss_pred EECCCCEECCCCEEEcCCCCCChHHccccceecCCeEECCCcEECCCCEECCCCEECC
Confidence 566666666666664 24556666666666554 455444
No 235
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=79.13 E-value=2.8 Score=41.99 Aligned_cols=31 Identities=6% Similarity=0.187 Sum_probs=14.3
Q ss_pred ccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 423 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 423 L~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
|+.++.|+.++.|. +++|++++.|+.+|.|.
T Consensus 34 IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~ig 65 (139)
T cd03350 34 VDEGTMVDSWATVGSCAQIGKNVHLSAGAVIG 65 (139)
T ss_pred ECCCeEEcCCCEECCCCEECCCCEECCCCEEC
Confidence 34444444444442 34445555555555553
No 236
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=79.10 E-value=1 Score=50.81 Aligned_cols=51 Identities=16% Similarity=0.038 Sum_probs=41.1
Q ss_pred cCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecc
Q 001402 405 PATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 405 ~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~ 455 (1084)
.+..+|+|.+|.++.+|.+..++.+...++|..|+++.++.||.+++|.++
T Consensus 284 vIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ivg~~~~IG~~~~id~~ 334 (371)
T KOG1322|consen 284 VIGPRVRIEDGVRLQDSTILGADYYETHSEISSSIVGWNVPIGIWARIDKN 334 (371)
T ss_pred eECCCcEecCceEEEeeEEEccceechhHHHHhhhccccccccCceEEecc
Confidence 334467788888888888888888888888888888888888888877653
No 237
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=79.01 E-value=4.8 Score=44.70 Aligned_cols=44 Identities=18% Similarity=0.262 Sum_probs=27.1
Q ss_pred eeeeccEEE-eccccCCceeCCCcEEE-------------EcEECCCcEECCCCeEec
Q 001402 411 DIAASAVVL-SSKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 411 ~i~~~~~V~-~SvL~~~v~V~~~s~Ve-------------~S~l~~~v~IG~~~iIsg 454 (1084)
.|..++.|. +++|+.++.|+++++|. +++|++++.|+++|.|..
T Consensus 36 ~I~~~~~I~~~v~IG~~~~I~~~a~I~~~~~~~~~~g~~~~v~IG~~~~I~~~~~I~~ 93 (254)
T TIGR01852 36 ELKSHVVILGHTTIGEGTRIFPGAVIGGVPQDLKYKGERTELIIGDNNTIREFVTINR 93 (254)
T ss_pred EECCCCEEeeeEEECCCCEECCCcEeCCCCcceeecCccceEEECCCCEECCCCEECC
Confidence 333443333 35666677777777775 566777777777777754
No 238
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=78.94 E-value=5.7 Score=37.85 Aligned_cols=13 Identities=15% Similarity=0.378 Sum_probs=5.1
Q ss_pred ccCCceeCCCcEE
Q 001402 423 IAHGVSIGEDSLI 435 (1084)
Q Consensus 423 L~~~v~V~~~s~V 435 (1084)
|+.+|.|++++.|
T Consensus 26 IG~~~~I~~~~~I 38 (107)
T cd05825 26 IGSDACISQGAYL 38 (107)
T ss_pred ECCCCEECCCeEe
Confidence 3334444443333
No 239
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=77.28 E-value=3.8 Score=46.02 Aligned_cols=28 Identities=32% Similarity=0.490 Sum_probs=13.9
Q ss_pred eccccCCceeCCCcEEEEcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iI 452 (1084)
+.+|+.+|.||.||.| .++++||+||+|
T Consensus 193 ~p~IGd~V~IGaga~I-----lggv~IG~~a~I 220 (273)
T PRK11132 193 HPKIREGVMIGAGAKI-----LGNIEVGRGAKI 220 (273)
T ss_pred CCEECCCcEEcCCCEE-----cCCCEECCCCEE
Confidence 3455556666655443 344444444444
No 240
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=77.11 E-value=3.2 Score=47.43 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=6.2
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
+.|+.+|.|+++++|
T Consensus 166 ~~IG~~v~I~~GavI 180 (338)
T COG1044 166 VVIGNNVIIHSGAVI 180 (338)
T ss_pred cEECCceEECCCCEE
Confidence 444444444444433
No 241
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=75.80 E-value=6.3 Score=41.98 Aligned_cols=30 Identities=40% Similarity=0.637 Sum_probs=11.5
Q ss_pred ccCCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 423 IAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 423 L~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
|.++++|+++++| .++.|..++.||++|.|
T Consensus 34 i~~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~I 64 (205)
T cd03352 34 IGDGVVIGDDCVIHPNVTIYEGCIIGDRVII 64 (205)
T ss_pred ECCCCEECCCCEECCCCEEcCCCEECCCcEE
Confidence 3334444444433 23333333333333333
No 242
>PRK10502 putative acyl transferase; Provisional
Probab=75.12 E-value=9.7 Score=40.10 Aligned_cols=16 Identities=31% Similarity=0.472 Sum_probs=7.2
Q ss_pred ccccCCceeCCCcEEE
Q 001402 421 SKIAHGVSIGEDSLIY 436 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve 436 (1084)
..|+.+|.|+++++|.
T Consensus 72 ~~IG~~~~Ig~~~~I~ 87 (182)
T PRK10502 72 LTIGDYAWIGDDVWLY 87 (182)
T ss_pred EEECCCeEECCCceec
Confidence 3344444444444443
No 243
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=75.04 E-value=4.3 Score=38.10 Aligned_cols=31 Identities=23% Similarity=0.431 Sum_probs=15.1
Q ss_pred cCCceeCCCcE---EEEcEECCCcEECCCCeEec
Q 001402 424 AHGVSIGEDSL---IYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 424 ~~~v~V~~~s~---Ve~S~l~~~v~IG~~~iIsg 454 (1084)
..+++|+.++. +.+++|++++.||.++.+..
T Consensus 38 ~~~~~i~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~ 71 (101)
T cd03354 38 YQGVTLGGKGKGGGKRHPTIGDNVVIGAGAKILG 71 (101)
T ss_pred cCCCEECCCccCCcCCCCEECCCcEEcCCCEEEC
Confidence 34444444442 44445555555555555543
No 244
>PRK10191 putative acyl transferase; Provisional
Probab=74.94 E-value=5.2 Score=40.73 Aligned_cols=32 Identities=19% Similarity=0.389 Sum_probs=16.0
Q ss_pred cccCCceeCCCcEEEE--------cEECCCcEECCCCeEe
Q 001402 422 KIAHGVSIGEDSLIYD--------SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~--------S~l~~~v~IG~~~iIs 453 (1084)
+|+.+|.|+.++.|++ ++|++++.||.+|.|.
T Consensus 69 ~IGd~~~I~h~v~IG~~~~~~~~~~~IGd~~~Ig~~~~I~ 108 (146)
T PRK10191 69 VAGDDFTIRHGVTIGNRGADNMACPHIGNGVELGANVIIL 108 (146)
T ss_pred EECCCCEECCCCEECCCCcCCCCCCEECCCcEEcCCCEEe
Confidence 4444555555555532 2455555555555554
No 245
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=73.99 E-value=8.7 Score=41.31 Aligned_cols=15 Identities=20% Similarity=0.257 Sum_probs=8.1
Q ss_pred cccCCceeCCCcEEE
Q 001402 422 KIAHGVSIGEDSLIY 436 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve 436 (1084)
.|+.+|.|++++.|.
T Consensus 97 ~IGd~v~Ig~~v~I~ 111 (203)
T PRK09527 97 TIGDNVLIAPNVTLS 111 (203)
T ss_pred EECCCCEECCCCEEE
Confidence 455555555555554
No 246
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=71.98 E-value=9.1 Score=40.69 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=12.4
Q ss_pred ccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 423 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 423 L~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
|+.+|.|+.+++|. .+.|++++.||.+++|
T Consensus 133 Ig~~~~ig~~~~i~~g~~Ig~~~~Iga~s~v 163 (192)
T PRK09677 133 IGQRVWIGENVTILPGVSIGNGCIVGANSVV 163 (192)
T ss_pred EcCCcEECCCCEEcCCCEECCCCEECCCCEE
Confidence 34444444444333 3444444444444444
No 247
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=71.55 E-value=2.7 Score=31.52 Aligned_cols=27 Identities=30% Similarity=0.517 Sum_probs=13.7
Q ss_pred ceeCCCcEEEEc-EECCCcEECCCCeEe
Q 001402 427 VSIGEDSLIYDS-NISSGIQIGSLSIVV 453 (1084)
Q Consensus 427 v~V~~~s~Ve~S-~l~~~v~IG~~~iIs 453 (1084)
+.|+++++|..- +|.+++.||++|+|.
T Consensus 2 ~~Ig~~~~i~~~~~i~~~~~Ig~~~~I~ 29 (36)
T PF00132_consen 2 VVIGDNVIIGPNAVIGGGVVIGDNCVIG 29 (36)
T ss_dssp EEEETTEEEETTEEEETTEEE-TTEEEE
T ss_pred CEEcCCCEECCCcEecCCCEECCCCEEc
Confidence 455555555532 335555555555553
No 248
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=71.40 E-value=5.5 Score=41.73 Aligned_cols=46 Identities=28% Similarity=0.388 Sum_probs=29.3
Q ss_pred CceeCCCcEEE-EcEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcEeeeee
Q 001402 426 GVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 483 (1084)
Q Consensus 426 ~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~ 483 (1084)
.+.||+++||. +++|+++|+||.|++|- |+.+-+ .+|++.+....|
T Consensus 124 ~v~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk------------dvp~~~iv~G~P 171 (190)
T COG0110 124 PVTIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK------------DVPPYGIVAGNP 171 (190)
T ss_pred CeEECCCeEEcCccEECCCEEECCCcEEeeCCEEeC------------ccCCCeEEeCCc
Confidence 45555555554 45678889999998885 444433 378887654333
No 249
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=71.33 E-value=5.9 Score=44.15 Aligned_cols=35 Identities=23% Similarity=0.327 Sum_probs=21.7
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEec
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg 454 (1084)
+..|+.++.|+++++|. ++.|+++++|+.++.|.+
T Consensus 29 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~ 64 (255)
T PRK12461 29 NVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGD 64 (255)
T ss_pred CCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCC
Confidence 34556666666666665 566666666666666643
No 250
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=70.95 E-value=8.3 Score=36.15 Aligned_cols=35 Identities=26% Similarity=0.425 Sum_probs=19.9
Q ss_pred EeccccCCceeCCCcEEEE-cEECCCcEECCCCeEe
Q 001402 419 LSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIs 453 (1084)
..++|+.++.|+.++.+.. +.|++++.|+.+|.|.
T Consensus 53 ~~~~Ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 53 RHPTIGDNVVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred CCCEECCCcEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 4455666666666666554 5555555555555553
No 251
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=69.86 E-value=10 Score=43.25 Aligned_cols=44 Identities=11% Similarity=0.134 Sum_probs=18.9
Q ss_pred CceeeeccEEEe-ccccCCce-eCCCcE----EEEcEECCCcEECCCCeE
Q 001402 409 VSDIAASAVVLS-SKIAHGVS-IGEDSL----IYDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 409 g~~i~~~~~V~~-SvL~~~v~-V~~~s~----Ve~S~l~~~v~IG~~~iI 452 (1084)
++.|..|+.|+. ++|..++. +|.+.+ -..++|+.++.||.+|.|
T Consensus 190 gA~LGeGT~IM~~a~Vn~nAgtiG~~~IEgrInsGavIGhds~IG~gasI 239 (341)
T TIGR03536 190 GAYVGEGTTVMHEGFINFNAGTEGPSMVEGRISAGVMVGKGSDLGGGCST 239 (341)
T ss_pred CcEECCCCEEecCCEECcCcEecCCceEecccccCCEECCCCEECCCCEE
Confidence 334555544444 44444444 332222 123344555555555555
No 252
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=68.35 E-value=10 Score=42.98 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=9.4
Q ss_pred EECCCcEECCCCeEeccccCC
Q 001402 439 NISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 439 ~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|++++-||.||.| |+.|..
T Consensus 227 ~IGe~~~IGagA~I-GI~IGd 246 (319)
T TIGR03535 227 SIGERCLLGANSGL-GISLGD 246 (319)
T ss_pred EECCCcEECCCCEE-CeEECC
Confidence 44444455555555 444433
No 253
>PRK10191 putative acyl transferase; Provisional
Probab=67.34 E-value=9.4 Score=38.86 Aligned_cols=12 Identities=33% Similarity=0.451 Sum_probs=4.7
Q ss_pred cCCceeCCCcEE
Q 001402 424 AHGVSIGEDSLI 435 (1084)
Q Consensus 424 ~~~v~V~~~s~V 435 (1084)
++++.||+++.|
T Consensus 65 ~~~~~IGd~~~I 76 (146)
T PRK10191 65 NKNVVAGDDFTI 76 (146)
T ss_pred CCCcEECCCCEE
Confidence 334444443333
No 254
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=67.13 E-value=10 Score=48.34 Aligned_cols=15 Identities=27% Similarity=0.419 Sum_probs=9.7
Q ss_pred cccCCceeCCCcEEE
Q 001402 422 KIAHGVSIGEDSLIY 436 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve 436 (1084)
.|+.+|.|++++.|+
T Consensus 618 ~IGd~~~I~~~~~i~ 632 (695)
T TIGR02353 618 TIGDDSTLNEGSVIQ 632 (695)
T ss_pred EECCCCEECCCCEEE
Confidence 566666666666664
No 255
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=66.97 E-value=14 Score=41.77 Aligned_cols=35 Identities=31% Similarity=0.576 Sum_probs=18.8
Q ss_pred EEeccccCCceeCCCcEEEEcE-----ECCC----cEECCCCeE
Q 001402 418 VLSSKIAHGVSIGEDSLIYDSN-----ISSG----IQIGSLSIV 452 (1084)
Q Consensus 418 V~~SvL~~~v~V~~~s~Ve~S~-----l~~~----v~IG~~~iI 452 (1084)
++++.|+.+|.||+++.|.-.. |.++ |+||++|.|
T Consensus 191 iI~g~I~HdvvIGd~~~IgpGvsI~G~LsGg~~~pV~IGe~~~I 234 (319)
T TIGR03535 191 MVEGRISAGVVVGDGSDIGGGASIMGTLSGGGKEVISIGERCLL 234 (319)
T ss_pred eEEEEEccCCEECCCCEECCCceecceecCCCcccEEECCCcEE
Confidence 3355555555555555554322 2335 666666666
No 256
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=65.72 E-value=13 Score=47.53 Aligned_cols=13 Identities=23% Similarity=0.335 Sum_probs=5.1
Q ss_pred ECCCcEECCCCeE
Q 001402 440 ISSGIQIGSLSIV 452 (1084)
Q Consensus 440 l~~~v~IG~~~iI 452 (1084)
|++|+.||.+|+|
T Consensus 163 IG~~~~IG~~s~I 175 (695)
T TIGR02353 163 LGRDAFIGTRSTL 175 (695)
T ss_pred ECCCcEECCCCEE
Confidence 3333333333333
No 257
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=64.98 E-value=9.7 Score=38.63 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=24.9
Q ss_pred EeccccCCceeCCCcEE-EEcEECCCcEECCCCeEec
Q 001402 419 LSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIsg 454 (1084)
..++|+.+|.|+.+++| .++.|++++.||.+|+|.+
T Consensus 72 ~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~~ 108 (145)
T cd03349 72 GDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVTK 108 (145)
T ss_pred CCcEECCCCEECCCCEEeCCCEECCCCEECCCCEEcc
Confidence 35677778888887777 4566677777777766643
No 258
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=64.26 E-value=7.4 Score=39.49 Aligned_cols=35 Identities=29% Similarity=0.434 Sum_probs=25.3
Q ss_pred ccCCceeCCCcEEE-EcEECCCcEECCCCeEe-cccc
Q 001402 423 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNF 457 (1084)
Q Consensus 423 L~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-g~~i 457 (1084)
...++.|+++++|. +|+|+++++||++|+|- ++.|
T Consensus 70 ~~~~~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V 106 (145)
T cd03349 70 SKGDVIIGNDVWIGHGATILPGVTIGDGAVIAAGAVV 106 (145)
T ss_pred ccCCcEECCCCEECCCCEEeCCCEECCCCEECCCCEE
Confidence 45678888888885 56667888888888885 3444
No 259
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=63.56 E-value=10 Score=28.61 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=14.9
Q ss_pred EECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 439 NISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 439 ~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
.|++++.||.+|.| ++.+.. ++.|.+|+.|
T Consensus 3 ~IG~~~~ig~~~~i-gi~igd----------~~~i~~g~~I 32 (34)
T PF14602_consen 3 TIGDNCFIGANSTI-GITIGD----------GVIIGAGVVI 32 (34)
T ss_dssp EE-TTEEE-TT-EE-TSEE-T----------TEEE-TTEEE
T ss_pred EECCCEEECccccc-CCEEcC----------CCEECCCCEE
Confidence 45666777777776 555544 3666666543
No 260
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=63.26 E-value=12 Score=41.00 Aligned_cols=11 Identities=36% Similarity=0.465 Sum_probs=5.1
Q ss_pred cccCCceeCCC
Q 001402 422 KIAHGVSIGED 432 (1084)
Q Consensus 422 vL~~~v~V~~~ 432 (1084)
.|+++|.||+.
T Consensus 17 ~ig~~V~IGpf 27 (260)
T COG1043 17 EIGEDVKIGPF 27 (260)
T ss_pred CcCCCCEECce
Confidence 34444455543
No 261
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=62.60 E-value=5.3 Score=39.84 Aligned_cols=20 Identities=10% Similarity=0.137 Sum_probs=14.0
Q ss_pred EcEECCCcEECCCCeEeccc
Q 001402 437 DSNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 437 ~S~l~~~v~IG~~~iIsg~~ 456 (1084)
+-+|+.+..||++|+|+.|.
T Consensus 107 yVh~GknaviGrrCVlkdCc 126 (184)
T KOG3121|consen 107 YVHLGKNAVIGRRCVLKDCC 126 (184)
T ss_pred eeEeccceeEcCceEhhhhe
Confidence 45666777777888877664
No 262
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=61.49 E-value=11 Score=41.22 Aligned_cols=33 Identities=18% Similarity=0.313 Sum_probs=19.0
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
|+++++|.|+++++|. |.+|.+..+||+|+.|-
T Consensus 28 ~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~ 61 (260)
T COG1043 28 CIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIF 61 (260)
T ss_pred EEECCCcEECCCcEEcccEEEeCCeEECCCCEEe
Confidence 4555666666665553 44555566666666554
No 263
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=60.11 E-value=15 Score=34.89 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=14.4
Q ss_pred cccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 422 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
+|+.+|.|+.+++|. .+.|++++.||.+|.|
T Consensus 58 ~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v 89 (107)
T cd05825 58 VIGDGAWVAAEAFVGPGVTIGEGAVVGARSVV 89 (107)
T ss_pred EECCCCEECCCCEECCCCEECCCCEECCCCEE
Confidence 445555555554443 3444444444444444
No 264
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=58.18 E-value=17 Score=43.38 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=22.0
Q ss_pred eeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEEC
Q 001402 401 LCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNIS 441 (1084)
Q Consensus 401 ~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~ 441 (1084)
+.++...+++.+..++.|.+|.|+++++||++|+|..+.+.
T Consensus 282 VinSil~~~~~vg~~svIe~s~l~~~~~IG~~cIisGv~~~ 322 (414)
T PF07959_consen 282 VINSILEGGVSVGPGSVIEHSHLGGPWSIGSNCIISGVDIN 322 (414)
T ss_pred EEEeEecCCceECCCCEEEeeecCCCCEECCCCEEECCccc
Confidence 33444444455555555555555555555555555555443
No 265
>PLN02917 CMP-KDO synthetase
Probab=51.75 E-value=45 Score=37.97 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=52.7
Q ss_pred CCeEEEEcCCcccccCcccc---C---cCCCcEEE--EEEEcChhccccceEEE--ECCCCCccccccccccceeEecCC
Q 001402 206 EGGIFTMTGDVLPCFDASTM---I---LPEDASCI--ITVPITLDIASNHGVIV--AAKDGILNENYALSLVDDLLQKPN 275 (1084)
Q Consensus 206 p~gVlV~sgD~I~~md~~~~---~---~~~a~vtv--~a~pv~~~~As~hGV~~--~d~~~~~~~~~~~~~v~~fleKPs 275 (1084)
.++|+|+.||+= .++...+ . ..++++++ ++.+..++...++|.+. .|++| ++..|..+|=
T Consensus 136 ~d~Vlil~gD~P-lI~~~tI~~li~~~~~~~~~iv~t~~~~~~~~~~~~ygrv~vv~~~~g---------~alyfsr~~I 205 (293)
T PLN02917 136 YDIVVNIQGDEP-LIEPEIIDGVVKALQAAPDAVFSTAVTSLKPEDASDPNRVKCVVDNQG---------YAIYFSRGLI 205 (293)
T ss_pred CCEEEEecCCcC-CCCHHHHHHHHHHHHhcCCceEEEEeeecCHHHhcCCCceEEEECCCC---------eEEEeecCcC
Confidence 579999999983 2222211 1 22333333 45566778889999985 67666 4455554432
Q ss_pred hhhhhccccc-CCCCcceeeeeeEEecHHHHHHH
Q 001402 276 VDELAKNHAI-LDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 276 ~~~m~~~~av-~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+++ + .+- ....-...-.|+|.|+.++|..+
T Consensus 206 pe~-k--d~~~~~~~i~~~n~Giy~f~~~~L~~l 236 (293)
T PLN02917 206 PYN-K--SGKVNPQFPYLLHLGIQSYDAKFLKIY 236 (293)
T ss_pred CcC-C--CcccccccceEEEEEEEEeCHHHHHHH
Confidence 211 0 000 01222577999999999998844
No 266
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=50.59 E-value=21 Score=39.65 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.5
Q ss_pred CCCcEECCCCeEe
Q 001402 441 SSGIQIGSLSIVV 453 (1084)
Q Consensus 441 ~~~v~IG~~~iIs 453 (1084)
..+|.||+||+|.
T Consensus 198 veGV~vGdg~VV~ 210 (271)
T COG2171 198 VEGVIVGDGCVVA 210 (271)
T ss_pred EeeeEeCCCcEEe
Confidence 3334444444443
No 267
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=48.74 E-value=22 Score=37.77 Aligned_cols=35 Identities=31% Similarity=0.446 Sum_probs=24.1
Q ss_pred EeccccCCceeCCCcEE-EEcEECCCcEECCCCeEe
Q 001402 419 LSSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs 453 (1084)
.+=.|+.+|.||+|+.| .+=.|++|++||+||+|.
T Consensus 118 RhPtIg~~V~IGagAkILG~I~IGd~akIGA~sVVl 153 (194)
T COG1045 118 RHPTIGNGVYIGAGAKILGNIEIGDNAKIGAGSVVL 153 (194)
T ss_pred CCCccCCCeEECCCCEEEcceEECCCCEECCCceEc
Confidence 45578888888888654 444567777777777763
No 268
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=44.14 E-value=15 Score=36.79 Aligned_cols=36 Identities=19% Similarity=0.326 Sum_probs=28.9
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEec-ccc
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNF 457 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg-~~i 457 (1084)
-++..|.|+++++|--..|+.-|.||+||+|-+ |.+
T Consensus 86 hiGdhVFieE~cVVnAAqIgsyVh~GknaviGrrCVl 122 (184)
T KOG3121|consen 86 HIGDHVFIEEECVVNAAQIGSYVHLGKNAVIGRRCVL 122 (184)
T ss_pred eecceEEEecceEeehhhheeeeEeccceeEcCceEh
Confidence 456677888888888888999999999999974 444
No 269
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=42.29 E-value=44 Score=37.24 Aligned_cols=38 Identities=24% Similarity=0.293 Sum_probs=21.0
Q ss_pred cccCCceeCCCcEEEE---------cEECCCcEECCCC-eEeccccCC
Q 001402 422 KIAHGVSIGEDSLIYD---------SNISSGIQIGSLS-IVVGTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~-iIsg~~i~~ 459 (1084)
+++.+|.|+-|+.|.- .+|++||-||.|+ ++.|+++.+
T Consensus 158 ~VGkn~higgGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGd 205 (271)
T COG2171 158 QVGKNSHIGGGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGD 205 (271)
T ss_pred EECCCcccCCcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCC
Confidence 5666666666666655 2344455555554 455555544
No 270
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=39.90 E-value=37 Score=36.90 Aligned_cols=34 Identities=21% Similarity=0.304 Sum_probs=17.8
Q ss_pred CCceeCCCcEEEEcEECCCcEECCCCeEeccccC
Q 001402 425 HGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFP 458 (1084)
Q Consensus 425 ~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~ 458 (1084)
.+|.||++|.+.+++++..+.+|++..|.|-++.
T Consensus 21 gdViIG~nS~l~~~V~g~~iivge~v~i~Gdiva 54 (277)
T COG4801 21 GDVIIGKNSMLKYGVVGEEIIVGERVRIYGDIVA 54 (277)
T ss_pred ccEEEcccceeeeeeeeeeEEeccCcEEeeeEEe
Confidence 3444555555555555555555555555555544
No 271
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=34.41 E-value=45 Score=33.81 Aligned_cols=35 Identities=26% Similarity=0.349 Sum_probs=24.6
Q ss_pred EeccccCCceeCCCcEEEEcEE----CCCcEECCCCeEe
Q 001402 419 LSSKIAHGVSIGEDSLIYDSNI----SSGIQIGSLSIVV 453 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~Ve~S~l----~~~v~IG~~~iIs 453 (1084)
..|-|-.+|+|+++++|.-+.. .+...||+||+|.
T Consensus 19 vEs~irGdvti~~gcVvHP~a~~iA~aGPI~iGEnniiE 57 (190)
T KOG4042|consen 19 VESDIRGDVTIKEGCVVHPFAVFIATAGPIYIGENNIIE 57 (190)
T ss_pred EecccccceEecCCcEecceEEEEcccCCEEEccCchhh
Confidence 3455666777777777765544 4578889988886
No 272
>cd02414 jag_KH jag_K homology RNA-binding domain. The KH domain is found in proteins homologous to the Bacillus subtilis protein Jag, which is associated with SpoIIIJ and is necessary for the third stage of sporulation. The KH motif is a beta-alpha-alpha-beta-beta unit that folds into an alpha-beta structure with a three stranded beta-sheet interupted by two contiguous helices. In general, KH binds single-stranded RNA or DNA. It is found in a wide variety of proteins including ribosomal proteins, transcription factors and post-transcriptional modifiers of mRNA.
Probab=29.42 E-value=65 Score=28.87 Aligned_cols=29 Identities=31% Similarity=0.197 Sum_probs=23.8
Q ss_pred EEEeeCCCCCccCChhhHHHHHHHHHHHH
Q 001402 80 TLAVPDPDGQRIGSGAATLNAIFSLAMHY 108 (1084)
Q Consensus 80 ~~~~~Dp~g~~iGsGg~Tl~~l~~~~~~~ 108 (1084)
+.+.+|..|.=||-.|-||+||+.|....
T Consensus 28 i~i~~~~~g~LIGk~G~tL~AlQ~L~~~~ 56 (77)
T cd02414 28 VNISGDDIGLLIGKRGKTLDALQYLANLV 56 (77)
T ss_pred EEEecCCCCeEECCCCccHHHHHHHHHHH
Confidence 44445666899999999999999998876
No 273
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=26.95 E-value=49 Score=35.93 Aligned_cols=31 Identities=26% Similarity=0.470 Sum_probs=18.6
Q ss_pred eCCCcEEEEc-EECCCcEECCCCeEe-ccccCC
Q 001402 429 IGEDSLIYDS-NISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 429 V~~~s~Ve~S-~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
|++|++|.-+ .|.+||+||+|++|- |..|-+
T Consensus 203 Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 203 IGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred ccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 4444444433 257888888888875 555433
No 274
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=26.62 E-value=63 Score=42.62 Aligned_cols=56 Identities=7% Similarity=0.033 Sum_probs=44.5
Q ss_pred eccCCCCceeeeccE-EEeccccCCceeCCCcEEEEcEEC-CCcEECCCCeEeccccC
Q 001402 403 SIPATTVSDIAASAV-VLSSKIAHGVSIGEDSLIYDSNIS-SGIQIGSLSIVVGTNFP 458 (1084)
Q Consensus 403 ~~~~~~g~~i~~~~~-V~~SvL~~~v~V~~~s~Ve~S~l~-~~v~IG~~~iIsg~~i~ 458 (1084)
++.+..++++..+++ |.+|-|+++++|+++++|-.+... -+..|.++..|..+++.
T Consensus 336 ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~~~~~~vP~~~ci~~vpl~ 393 (974)
T PRK13412 336 NAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPENSWNLDLPEGVCIDVVPVG 393 (974)
T ss_pred eeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEecccccccceecCCCcEEEEEEcC
Confidence 344444556777766 777999999999999999999743 36899999999999973
No 275
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=25.15 E-value=2.7e+02 Score=29.76 Aligned_cols=34 Identities=32% Similarity=0.604 Sum_probs=21.1
Q ss_pred cccCCceeCCCcEEEEc---------------EECCCcEECCCCeEecc
Q 001402 422 KIAHGVSIGEDSLIYDS---------------NISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S---------------~l~~~v~IG~~~iIsg~ 455 (1084)
||+..+.||++++|.++ .|+++|.||.|++|-|-
T Consensus 89 VIgeta~IGddv~I~~gVTLGgtg~~~g~RhPtIg~~V~IGagAkILG~ 137 (194)
T COG1045 89 VIGETAVIGDDVTIYHGVTLGGTGKESGKRHPTIGNGVYIGAGAKILGN 137 (194)
T ss_pred EEcceeEECCCeEEEcceEecCCCCcCCCCCCccCCCeEECCCCEEEcc
Confidence 44455555555555554 45667788888877764
No 276
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=23.74 E-value=1.1e+02 Score=33.60 Aligned_cols=59 Identities=17% Similarity=0.250 Sum_probs=46.0
Q ss_pred eeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcE
Q 001402 411 DIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 411 ~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
.|..++.+.-+|.+..+.+++++.|+.-++..+++|+..|.++|=.+-++ +.-|-+++.
T Consensus 24 iIG~nS~l~~~V~g~~iivge~v~i~Gdiva~diridmw~kv~gNV~ve~---------dayiGE~~s 82 (277)
T COG4801 24 IIGKNSMLKYGVVGEEIIVGERVRIYGDIVAKDIRIDMWCKVTGNVIVEN---------DAYIGEFSS 82 (277)
T ss_pred EEcccceeeeeeeeeeEEeccCcEEeeeEEecceeeeeeeEeeccEEEcC---------ceEEeccce
Confidence 35566677788999999999999999999999999999999996433332 456665554
No 277
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=23.06 E-value=1.1e+02 Score=29.62 Aligned_cols=49 Identities=12% Similarity=0.106 Sum_probs=41.5
Q ss_pred EccCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 50 LTAASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 50 ~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
+-..+++|++.|-+.|.+.+... -||++..|+.+.|-+..-.|-||.|+
T Consensus 66 ~g~~~~e~k~~l~~~i~~~l~~~lgi~~~rv~I~f~~~~~~~w~~~G~~f 115 (116)
T PTZ00397 66 IGGISRSNNSSIAAAITKILASHLKVKSERVYIEFKDCSAQNWAFNGSTF 115 (116)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECChhheeEcceeC
Confidence 34578999999999999887664 68999999999998778899999875
No 278
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=22.76 E-value=93 Score=31.67 Aligned_cols=25 Identities=20% Similarity=0.400 Sum_probs=14.2
Q ss_pred eCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 429 IGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 429 V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
||+.-+|| +++++++|.+.++|+|-
T Consensus 98 vGd~NVieskayvg~gv~vssgC~vG 123 (190)
T KOG4042|consen 98 VGDRNVIESKAYVGDGVSVSSGCSVG 123 (190)
T ss_pred hcCcceEeeeeEecCCcEEcCCceec
Confidence 34444443 46666666666666663
No 279
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=20.82 E-value=84 Score=32.72 Aligned_cols=33 Identities=33% Similarity=0.474 Sum_probs=15.2
Q ss_pred cccCCceeCCCcEEEEc-EECCCcEECCCCeEec
Q 001402 422 KIAHGVSIGEDSLIYDS-NISSGIQIGSLSIVVG 454 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S-~l~~~v~IG~~~iIsg 454 (1084)
+|+.+|.||.+++|-.= .|++++.||.++++++
T Consensus 126 ~IG~~vwIG~~a~IlpGV~IG~gavigagsVVtk 159 (190)
T COG0110 126 TIGEDVWIGAGAVILPGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred EECCCeEEcCccEECCCEEECCCcEEeeCCEEeC
Confidence 44444444444444333 3444555555555554
Done!