Query 001402
Match_columns 1084
No_of_seqs 475 out of 2592
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 02:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001402.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001402hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k85_A D-glycero-D-manno-hepto 100.0 1.6E-45 5.3E-50 423.6 26.4 316 740-1068 4-322 (357)
2 3k17_A LIN0012 protein; protei 100.0 1.5E-37 5.1E-42 358.0 37.3 309 739-1068 6-342 (365)
3 2pg9_A Phosphomevalonate kinas 100.0 3.6E-37 1.2E-41 351.5 32.9 307 739-1081 3-332 (337)
4 4hac_A Mevalonate kinase; GHMP 100.0 1E-35 3.6E-40 337.2 36.7 300 733-1083 15-316 (321)
5 3v2u_C Protein GAL3; rossmann 100.0 5E-36 1.7E-40 356.2 35.4 310 740-1068 40-488 (520)
6 3gon_A Phosphomevalonate kinas 100.0 1.5E-35 5.3E-40 336.6 33.5 308 740-1082 2-331 (335)
7 2a2c_A N-acetylgalactosamine k 100.0 3.2E-35 1.1E-39 350.3 37.3 318 739-1081 55-469 (478)
8 1pie_A Galactokinase; galactos 100.0 7.7E-35 2.6E-39 342.0 36.4 316 740-1081 49-410 (419)
9 1wuu_A Galactokinase; galactos 100.0 1.8E-34 6.1E-39 336.8 37.3 316 739-1081 36-391 (399)
10 1kvk_A MK, mevalonate kinase; 100.0 4.6E-34 1.6E-38 332.9 34.0 311 739-1081 5-373 (395)
11 2hfs_A Mevalonate kinase, puta 100.0 9E-33 3.1E-37 314.3 35.5 306 740-1081 14-325 (332)
12 2cz9_A Probable galactokinase; 100.0 9.9E-33 3.4E-37 316.1 35.6 311 740-1081 2-345 (350)
13 2x7i_A Mevalonate kinase; tran 100.0 9.1E-33 3.1E-37 311.0 32.8 299 738-1081 5-307 (308)
14 1kkh_A Mevalonate kinase; mixe 100.0 6.7E-32 2.3E-36 305.2 33.6 308 737-1081 3-316 (317)
15 2oi2_A Mevalonate kinase; enzy 100.0 1.3E-30 4.6E-35 290.8 35.2 275 739-1068 5-282 (292)
16 1h72_C HK, homoserine kinase; 99.9 3.8E-26 1.3E-30 255.5 28.3 277 739-1069 2-281 (296)
17 3hul_A HSK, HK, homoserine kin 99.9 4.6E-24 1.6E-28 239.1 31.1 279 740-1083 3-284 (298)
18 3pyf_A 4-diphosphocytidyl-2-C- 99.9 3.7E-24 1.3E-28 240.7 27.7 284 739-1082 5-294 (306)
19 3qt5_A Mevalonate diphosphate 99.9 6E-22 2.1E-26 225.1 31.3 298 739-1078 9-321 (332)
20 2gs8_A Mevalonate pyrophosphat 99.9 1.6E-21 5.6E-26 220.3 32.7 292 738-1081 7-312 (317)
21 2v8p_A 4-diphosphocytidyl-2-C- 99.9 8.1E-23 2.8E-27 226.0 18.6 250 739-1063 4-260 (271)
22 2ww4_A 4-diphosphocytidyl-2C-m 99.9 3E-22 1E-26 222.9 19.0 251 740-1068 3-264 (283)
23 1uek_A 4-(cytidine 5'-diphosph 99.9 4.3E-22 1.5E-26 220.6 16.9 260 740-1082 2-267 (275)
24 1fi4_A Mevalonate 5-diphosphat 99.8 3.3E-18 1.1E-22 200.0 33.4 294 739-1068 25-346 (416)
25 2hke_A Diphosphomevalonate dec 99.7 4E-16 1.4E-20 180.5 29.5 285 740-1070 6-319 (380)
26 3lto_A Mevalonate diphosphate 99.7 2.3E-15 8E-20 169.1 24.2 210 840-1077 89-316 (323)
27 3brk_X Glucose-1-phosphate ade 99.6 8.8E-15 3E-19 171.5 19.8 269 181-484 107-394 (420)
28 3f0n_A Mevalonate pyrophosphat 99.6 1E-13 3.5E-18 159.0 22.5 205 842-1070 122-345 (414)
29 1yp2_A Glucose-1-phosphate ade 99.5 2E-13 6.7E-18 161.4 19.8 256 180-479 116-414 (451)
30 1hm9_A GLMU, UDP-N-acetylgluco 98.9 4E-09 1.4E-13 124.9 12.8 104 182-310 85-194 (468)
31 3st8_A Bifunctional protein GL 98.8 2E-08 6.9E-13 120.2 14.2 108 180-311 91-204 (501)
32 2iu8_A LPXD, UDP-3-O-[3-hydrox 98.7 7.1E-09 2.4E-13 119.5 4.8 73 210-306 14-89 (374)
33 4fce_A Bifunctional protein GL 98.7 6.3E-08 2.1E-12 114.2 11.6 103 182-311 83-189 (459)
34 2v0h_A Bifunctional protein GL 98.6 1.1E-07 3.6E-12 112.1 11.9 102 182-310 80-185 (456)
35 2ggo_A 401AA long hypothetical 98.6 1.5E-07 5E-12 109.1 12.8 80 206-308 90-171 (401)
36 3c8v_A Putative acetyltransfer 98.0 1.3E-06 4.5E-11 103.4 3.1 57 214-278 95-153 (496)
37 3juk_A UDP-glucose pyrophospho 97.4 0.00016 5.4E-09 79.4 6.7 104 180-310 104-218 (281)
38 4ecm_A Glucose-1-phosphate thy 97.1 0.00088 3E-08 73.1 8.6 94 181-306 107-204 (269)
39 2qh5_A PMI, ALGA, mannose-6-ph 97.0 0.00065 2.2E-08 75.8 6.3 108 181-310 87-203 (308)
40 3pnn_A Conserved domain protei 97.0 0.00053 1.8E-08 76.4 5.5 109 181-308 100-228 (303)
41 2pa4_A UTP-glucose-1-phosphate 96.9 0.00088 3E-08 75.3 6.6 104 181-308 115-228 (323)
42 2x65_A Mannose-1-phosphate gua 96.6 0.0011 3.8E-08 75.0 4.1 113 182-311 84-206 (336)
43 4evw_A Nucleoside-diphosphate- 96.5 0.0082 2.8E-07 65.0 10.5 97 180-303 83-180 (255)
44 3kwd_A Carbon dioxide concentr 96.4 0.0076 2.6E-07 63.3 8.7 61 409-479 117-178 (213)
45 2e3d_A UTP--glucose-1-phosphat 96.3 0.0052 1.8E-07 68.1 7.6 99 181-306 112-226 (302)
46 1fxo_A Glucose-1-phosphate thy 96.3 0.0096 3.3E-07 65.9 9.6 97 181-308 85-186 (293)
47 1lvw_A Glucose-1-phosphate thy 96.2 0.01 3.5E-07 65.8 8.8 97 181-308 86-187 (295)
48 3brk_X Glucose-1-phosphate ade 96.1 0.0062 2.1E-07 70.8 6.7 71 386-457 324-394 (420)
49 3r8y_A 2,3,4,5-tetrahydropyrid 96.0 0.007 2.4E-07 64.8 6.4 40 420-459 139-188 (240)
50 1mc3_A Glucose-1-phosphate thy 96.0 0.0089 3E-07 66.3 7.1 96 181-307 86-186 (296)
51 2cu2_A Putative mannose-1-phos 95.8 0.0069 2.3E-07 68.5 5.5 112 182-310 82-202 (337)
52 2ux8_A Glucose-1-phosphate uri 95.8 0.0023 7.7E-08 70.9 1.5 101 181-307 116-225 (297)
53 1xhd_A Putative acetyltransfer 95.6 0.023 7.8E-07 57.6 8.0 51 409-459 57-113 (173)
54 1yp2_A Glucose-1-phosphate ade 95.6 0.013 4.3E-07 68.7 6.7 69 386-455 330-417 (451)
55 3ixc_A Hexapeptide transferase 95.4 0.022 7.4E-07 58.8 6.8 38 422-459 74-117 (191)
56 3ixc_A Hexapeptide transferase 95.3 0.019 6.7E-07 59.1 6.2 54 406-459 75-135 (191)
57 3r3r_A Ferripyochelin binding 95.3 0.024 8E-07 58.0 6.7 40 419-458 82-122 (187)
58 1v3w_A Ferripyochelin binding 95.2 0.037 1.2E-06 56.1 8.0 51 409-459 55-111 (173)
59 3kwd_A Carbon dioxide concentr 95.2 0.035 1.2E-06 58.1 8.0 39 421-459 112-151 (213)
60 1xhd_A Putative acetyltransfer 95.2 0.034 1.2E-06 56.3 7.5 52 408-459 35-95 (173)
61 3oam_A 3-deoxy-manno-octuloson 95.1 0.019 6.4E-07 62.0 5.6 95 206-310 91-197 (252)
62 3c8v_A Putative acetyltransfer 95.0 0.02 6.8E-07 67.8 6.0 51 409-459 297-347 (496)
63 1tzf_A Glucose-1-phosphate cyt 94.9 0.016 5.5E-07 62.2 4.4 74 206-305 122-199 (259)
64 3r1w_A Carbonic anhydrase; bet 94.9 0.036 1.2E-06 56.7 6.7 32 422-453 89-120 (189)
65 1qre_A Carbonic anhydrase; bet 94.8 0.049 1.7E-06 58.5 7.8 47 411-457 148-195 (247)
66 1v3w_A Ferripyochelin binding 94.5 0.066 2.3E-06 54.1 7.7 51 409-459 34-93 (173)
67 2ggo_A 401AA long hypothetical 94.5 0.045 1.5E-06 62.8 7.1 49 406-454 283-331 (401)
68 3r3r_A Ferripyochelin binding 94.5 0.06 2.1E-06 55.0 7.2 61 409-479 39-115 (187)
69 3r8y_A 2,3,4,5-tetrahydropyrid 94.4 0.037 1.3E-06 59.1 5.8 35 420-454 121-156 (240)
70 1qre_A Carbonic anhydrase; bet 94.2 0.072 2.4E-06 57.3 7.4 40 420-459 140-180 (247)
71 1hm9_A GLMU, UDP-N-acetylgluco 94.2 0.035 1.2E-06 65.1 5.3 50 409-459 298-348 (468)
72 3r1w_A Carbonic anhydrase; bet 94.1 0.094 3.2E-06 53.5 7.7 52 409-460 43-110 (189)
73 3k8d_A 3-deoxy-manno-octuloson 94.1 0.052 1.8E-06 59.1 6.0 97 205-311 106-214 (264)
74 3jqy_B NEUO, polysialic acid O 94.0 0.066 2.3E-06 57.7 6.7 19 420-438 126-144 (252)
75 2v0h_A Bifunctional protein GL 93.7 0.088 3E-06 61.3 7.4 49 409-457 289-338 (456)
76 3vbi_A ANTD, galactoside O-ace 93.6 0.11 3.9E-06 53.8 7.4 33 420-452 70-106 (205)
77 3bfp_A Acetyltransferase; LEFT 93.4 0.13 4.6E-06 52.9 7.5 33 422-454 109-142 (194)
78 3ftt_A Putative acetyltransfer 93.3 0.073 2.5E-06 55.3 5.2 28 425-452 129-157 (199)
79 1krr_A Galactoside O-acetyltra 93.1 0.12 4.2E-06 53.9 6.5 56 423-495 128-185 (203)
80 4fce_A Bifunctional protein GL 93.0 0.12 4.1E-06 60.2 7.2 52 408-459 291-343 (459)
81 3tqd_A 3-deoxy-manno-octuloson 92.9 0.13 4.5E-06 55.6 6.8 96 206-310 98-206 (256)
82 3srt_A Maltose O-acetyltransfe 92.9 0.13 4.5E-06 52.8 6.4 14 422-435 98-111 (188)
83 3vbi_A ANTD, galactoside O-ace 92.8 0.18 6.1E-06 52.3 7.5 54 406-459 73-157 (205)
84 3st8_A Bifunctional protein GL 92.7 0.18 6.1E-06 59.9 8.0 47 408-454 357-403 (501)
85 3gos_A 2,3,4,5-tetrahydropyrid 92.6 0.15 5.2E-06 55.8 6.8 13 472-484 228-242 (276)
86 3nz2_A Hexapeptide-repeat cont 92.6 0.1 3.5E-06 53.9 5.1 15 438-452 145-159 (195)
87 4ea9_A Perosamine N-acetyltran 92.5 0.18 6E-06 53.0 7.0 8 508-515 205-212 (220)
88 2pig_A Putative transferase; S 92.4 0.2 6.9E-06 56.3 7.6 48 409-456 151-198 (334)
89 3ftt_A Putative acetyltransfer 92.3 0.18 6.1E-06 52.3 6.6 38 422-459 96-153 (199)
90 3fsy_A Tetrahydrodipicolinate 92.3 0.23 7.9E-06 54.9 7.6 48 421-479 208-264 (332)
91 3eg4_A 2,3,4,5-tetrahydropyrid 92.2 0.15 5.1E-06 56.7 6.2 21 438-458 203-224 (304)
92 3pmo_A UDP-3-O-[3-hydroxymyris 92.2 0.12 4.3E-06 59.0 5.6 34 420-453 161-195 (372)
93 3bfp_A Acetyltransferase; LEFT 92.1 0.16 5.6E-06 52.3 6.0 32 421-452 126-158 (194)
94 2p2o_A Maltose transacetylase; 92.1 0.17 5.7E-06 52.0 6.0 27 426-452 130-157 (185)
95 3nz2_A Hexapeptide-repeat cont 92.1 0.22 7.7E-06 51.4 7.0 38 422-459 98-155 (195)
96 2pig_A Putative transferase; S 92.0 0.17 5.7E-06 57.0 6.3 52 403-454 162-218 (334)
97 4ea9_A Perosamine N-acetyltran 91.8 0.18 6.1E-06 52.9 6.0 32 421-452 148-180 (220)
98 3hjj_A Maltose O-acetyltransfe 91.6 0.13 4.5E-06 52.8 4.5 6 473-478 171-176 (190)
99 1ocx_A Maltose O-acetyltransfe 91.6 0.17 5.7E-06 51.9 5.2 27 426-452 128-155 (182)
100 3hjj_A Maltose O-acetyltransfe 91.6 0.28 9.5E-06 50.4 7.0 48 421-478 99-166 (190)
101 2iu8_A LPXD, UDP-3-O-[3-hydrox 91.5 0.17 5.7E-06 57.8 5.7 9 471-479 197-205 (374)
102 2p2o_A Maltose transacetylase; 91.4 0.26 8.8E-06 50.6 6.5 39 421-459 95-153 (185)
103 3tk8_A 2,3,4,5-tetrahydropyrid 91.3 0.26 9.1E-06 54.9 6.9 12 472-483 269-282 (316)
104 3gos_A 2,3,4,5-tetrahydropyrid 91.3 0.2 6.9E-06 54.8 5.8 10 582-591 265-274 (276)
105 3fsy_A Tetrahydrodipicolinate 91.2 0.29 1E-05 54.1 6.9 45 409-454 213-266 (332)
106 2wlg_A Polysialic acid O-acety 91.1 0.53 1.8E-05 49.2 8.7 19 420-438 100-118 (215)
107 3tk8_A 2,3,4,5-tetrahydropyrid 91.1 0.21 7.3E-06 55.7 5.8 15 438-452 219-233 (316)
108 1j2z_A Acyl-[acyl-carrier-prot 91.0 0.24 8.3E-06 53.9 6.1 33 420-452 31-64 (270)
109 3pmo_A UDP-3-O-[3-hydroxymyris 90.9 0.19 6.5E-06 57.4 5.4 40 420-459 143-184 (372)
110 3mc4_A WW/RSP5/WWP domain:bact 90.8 0.34 1.2E-05 53.2 7.0 39 421-459 191-239 (287)
111 3eev_A Chloramphenicol acetylt 90.8 0.2 6.9E-06 52.4 5.1 48 424-483 109-158 (212)
112 3tv0_A Dynactin subunit 6; LEF 90.8 0.38 1.3E-05 49.4 7.1 36 438-483 115-151 (194)
113 3eg4_A 2,3,4,5-tetrahydropyrid 90.4 0.27 9.4E-06 54.5 5.9 45 409-453 141-186 (304)
114 4hur_A Virginiamycin A acetylt 90.3 0.27 9.1E-06 51.8 5.5 28 426-453 119-147 (220)
115 3r5d_A Tetrahydrodipicolinate 90.3 0.46 1.6E-05 52.9 7.4 48 420-478 230-286 (347)
116 3r5d_A Tetrahydrodipicolinate 90.2 0.27 9.4E-06 54.7 5.6 46 409-454 196-247 (347)
117 3jqy_B NEUO, polysialic acid O 90.2 0.47 1.6E-05 50.9 7.4 36 420-455 105-144 (252)
118 3mqg_A Lipopolysaccharides bio 90.0 0.36 1.2E-05 49.4 6.0 15 438-452 103-117 (192)
119 3eh0_A UDP-3-O-[3-hydroxymyris 89.7 0.43 1.5E-05 53.8 6.8 42 412-453 154-216 (341)
120 1krr_A Galactoside O-acetyltra 89.7 0.51 1.7E-05 49.2 6.9 39 421-459 96-154 (203)
121 1ocx_A Maltose O-acetyltransfe 89.5 0.59 2E-05 47.7 7.2 39 421-459 93-151 (182)
122 3eh0_A UDP-3-O-[3-hydroxymyris 89.2 0.33 1.1E-05 54.7 5.4 33 420-452 145-178 (341)
123 1jv1_A Glcnac1P uridyltransfer 88.9 0.68 2.3E-05 54.9 8.0 136 160-311 199-344 (505)
124 3t57_A UDP-N-acetylglucosamine 88.7 0.56 1.9E-05 51.9 6.8 45 409-453 43-93 (305)
125 4eqy_A Acyl-[acyl-carrier-prot 88.6 0.62 2.1E-05 50.9 7.0 33 421-453 126-159 (283)
126 3t57_A UDP-N-acetylglucosamine 88.6 0.68 2.3E-05 51.2 7.4 53 421-483 38-96 (305)
127 4e79_A UDP-3-O-acylglucosamine 88.6 0.36 1.2E-05 54.7 5.3 9 268-276 43-51 (357)
128 1ssq_A SAT, serine acetyltrans 88.5 0.67 2.3E-05 50.4 7.0 40 420-459 163-212 (267)
129 3srt_A Maltose O-acetyltransfe 88.3 0.76 2.6E-05 47.0 7.1 15 438-452 145-159 (188)
130 3mc4_A WW/RSP5/WWP domain:bact 88.2 0.57 1.9E-05 51.4 6.3 33 421-453 217-250 (287)
131 1j2z_A Acyl-[acyl-carrier-prot 88.2 0.4 1.4E-05 52.1 5.1 39 420-458 25-65 (270)
132 3r0s_A Acyl-[acyl-carrier-prot 88.0 0.67 2.3E-05 50.2 6.7 43 411-453 42-99 (266)
133 1t3d_A SAT, serine acetyltrans 88.0 0.77 2.6E-05 50.4 7.1 40 420-459 183-232 (289)
134 3f1x_A Serine acetyltransferas 87.8 0.57 1.9E-05 52.0 6.0 21 439-459 253-274 (310)
135 2qia_A UDP-N-acetylglucosamine 87.7 0.83 2.8E-05 49.1 7.2 34 420-453 53-99 (262)
136 3r0s_A Acyl-[acyl-carrier-prot 87.5 0.6 2E-05 50.5 6.0 34 420-453 34-68 (266)
137 3fs8_A QDTC; acetyltransferase 87.3 0.87 3E-05 49.1 7.1 32 421-452 89-121 (273)
138 2rij_A Putative 2,3,4,5-tetrah 87.2 0.96 3.3E-05 51.6 7.5 30 438-478 291-320 (387)
139 4eqy_A Acyl-[acyl-carrier-prot 87.1 0.84 2.9E-05 49.8 6.9 33 420-452 100-140 (283)
140 2qia_A UDP-N-acetylglucosamine 87.1 0.71 2.4E-05 49.6 6.2 34 420-453 35-69 (262)
141 1ssq_A SAT, serine acetyltrans 87.0 0.7 2.4E-05 50.2 6.0 33 421-453 190-223 (267)
142 2wlg_A Polysialic acid O-acety 86.9 0.73 2.5E-05 48.1 6.0 47 409-455 64-118 (215)
143 3f1x_A Serine acetyltransferas 86.6 0.86 2.9E-05 50.6 6.6 33 421-453 252-285 (310)
144 3fs8_A QDTC; acetyltransferase 86.3 0.85 2.9E-05 49.2 6.4 39 421-459 71-111 (273)
145 3q1x_A Serine acetyltransferas 84.8 1.3 4.5E-05 49.2 7.0 22 438-459 224-246 (313)
146 3hsq_A Acyl-[acyl-carrier-prot 84.7 1 3.5E-05 48.4 6.0 16 438-453 80-95 (259)
147 4e6u_A Acyl-[acyl-carrier-prot 84.7 1.1 3.8E-05 48.2 6.3 17 437-453 85-101 (265)
148 1t3d_A SAT, serine acetyltrans 84.5 1.1 3.8E-05 49.2 6.1 32 421-452 210-242 (289)
149 4hur_A Virginiamycin A acetylt 83.9 0.83 2.8E-05 48.0 4.6 16 438-453 120-135 (220)
150 4e6u_A Acyl-[acyl-carrier-prot 83.6 1.8 6.3E-05 46.5 7.4 33 420-452 85-125 (265)
151 3eev_A Chloramphenicol acetylt 83.1 1.6 5.3E-05 45.5 6.4 16 420-435 58-73 (212)
152 3hsq_A Acyl-[acyl-carrier-prot 82.8 1.3 4.4E-05 47.6 5.8 33 420-452 30-63 (259)
153 2i5k_A UTP--glucose-1-phosphat 82.7 3.2 0.00011 49.0 9.4 137 159-311 177-323 (488)
154 4e8l_A Virginiamycin A acetylt 82.3 1.4 5E-05 46.3 5.8 28 421-453 119-146 (219)
155 1jyk_A LICC protein, CTP:phosp 82.2 2.7 9.3E-05 44.9 8.0 73 208-308 120-193 (254)
156 2y6p_A 3-deoxy-manno-octuloson 81.5 2 7E-05 44.7 6.6 89 206-310 86-182 (234)
157 2icy_A Probable UTP-glucose-1- 80.8 3.3 0.00011 48.5 8.6 136 160-311 165-310 (469)
158 3tv0_A Dynactin subunit 6; LEF 79.1 4.1 0.00014 41.5 7.8 38 422-459 87-125 (194)
159 1xat_A Xenobiotic acetyltransf 78.3 1.7 5.8E-05 45.5 4.6 27 422-453 112-138 (212)
160 1vic_A 3-deoxy-manno-octuloson 77.8 3 0.0001 44.5 6.6 96 206-310 91-201 (262)
161 1h7e_A 3-deoxy-manno-octuloson 77.6 1.7 5.9E-05 45.7 4.5 90 206-309 89-187 (245)
162 2rij_A Putative 2,3,4,5-tetrah 73.6 2.3 8E-05 48.4 4.4 37 417-453 255-300 (387)
163 4fcu_A 3-deoxy-manno-octuloson 72.1 5.8 0.0002 42.5 6.9 94 206-310 91-198 (253)
164 3q1x_A Serine acetyltransferas 71.2 3.6 0.00012 45.7 5.1 34 420-453 223-257 (313)
165 1mr7_A Streptogramin A acetylt 71.1 3.5 0.00012 42.9 4.8 32 421-452 114-146 (209)
166 3oc9_A UDP-N-acetylglucosamine 56.2 21 0.00073 40.8 7.9 133 160-309 133-275 (405)
167 1xat_A Xenobiotic acetyltransf 56.2 6.8 0.00023 40.8 3.6 23 437-459 110-133 (212)
168 2opa_A Probable tautomerase YW 54.3 6.5 0.00022 31.8 2.4 56 43-98 1-57 (61)
169 1mr7_A Streptogramin A acetylt 52.4 8.4 0.00029 40.0 3.5 39 421-459 108-148 (209)
170 1otf_A 4-oxalocrotonate tautom 52.3 6.5 0.00022 31.8 2.1 56 43-98 1-57 (62)
171 4e8l_A Virginiamycin A acetylt 51.9 8.6 0.00029 40.3 3.5 24 436-459 117-141 (219)
172 3abf_A 4-oxalocrotonate tautom 46.7 13 0.00045 30.2 3.1 57 43-99 2-59 (64)
173 2x4k_A 4-oxalocrotonate tautom 41.2 13 0.00045 29.8 2.3 56 43-98 4-60 (63)
174 2xme_A CTP-inositol-1-phosphat 39.7 23 0.00078 36.7 4.5 76 207-307 109-185 (232)
175 2yqc_A UDP-N-acetylglucosamine 36.9 55 0.0019 38.4 7.6 137 160-311 202-352 (486)
176 1ezi_A CMP-N-acetylneuraminic 30.4 68 0.0023 32.8 6.3 83 206-308 97-189 (228)
177 2dpw_A Hypothetical protein TT 25.9 10 0.00035 39.5 -1.1 88 182-310 70-161 (232)
178 3t5s_A Gilaa.00834.A, macropha 24.2 31 0.001 33.2 2.0 55 44-98 77-135 (135)
179 2os5_A Acemif; macrophage migr 22.9 61 0.0021 29.9 3.8 48 52-99 67-115 (119)
180 4dh4_A MIF; trimer, isomerase; 22.9 53 0.0018 30.1 3.4 53 46-98 61-114 (114)
181 1mww_A Hypothetical protein HI 22.6 52 0.0018 30.8 3.3 57 42-98 56-116 (128)
182 3m21_A Probable tautomerase HP 21.7 65 0.0022 26.5 3.3 50 52-101 13-63 (67)
183 3ry0_A Putative tautomerase; o 21.6 55 0.0019 26.7 2.8 58 43-100 1-59 (65)
No 1
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.6e-45 Score=423.61 Aligned_cols=316 Identities=25% Similarity=0.379 Sum_probs=237.4
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
++++|||||+|+||||||++|++.+||.||++||+++++ ++++++++..|++.+.+.......++.+ +...++
T Consensus 4 i~~~APgRvnL~GehtD~~~~~~~~gG~vl~~AId~~~~----v~i~~~~d~~i~i~s~~~~~~~~~~~~~---~~~~~~ 76 (357)
T 3k85_A 4 VRSKAPLRLGLAGGGSDVSPYSDIYGGLILNATINLYAY----CTIEETNSGRIEINAYDAQCCKSYLSMS---QLEIDG 76 (357)
T ss_dssp EEEEEEEEEEEECTTTTSTTHHHHTCEEEEEEEEEEEEE----EEEEECSSSEEEEEETTTTEEEEEECCS---SCCCCS
T ss_pred EEEECceEEEEecCCccCcchhhcCCCEEEEEEEeCcEE----EEEEECCCCeEEEEECCCCceEEEeccc---cccccc
Confidence 789999999999999999999999999999999999986 7788888888999886554322223222 123357
Q ss_pred hHHHHHHHHHHhhhhhhhcc-cccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hcC
Q 001402 820 PFRLVKSALLVTGVIHEKLI-ESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LMG 897 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~-~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~~g 897 (1084)
|.+|+++++..+.. .+. ...|++|++.++||.|+|||||||+++|++.|+++++++++++++|+++|..+|+ +.|
T Consensus 77 ~~~~v~~~~~~l~~---~~~~~~~g~~i~i~~~iP~g~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E~~~~G 153 (357)
T 3k85_A 77 EASLIKGVYNRIIR---DYRLEPKSFKITTYNDAPAGSGLGTSSTMVVCILKAFIEWLSLPLGDYETSRLAYEIERKDLG 153 (357)
T ss_dssp SSHHHHHHHHHHHH---HTTCCCCCEEEEEEESSCSSSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTC
T ss_pred hHHHHHHHHHHHHH---hcCCCCCCEEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcc
Confidence 89999999987752 232 2579999999999999999999999999999999999999999999999999998 679
Q ss_pred CCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 898 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 898 t~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
++||+|||+++++||...+.+.++. ...++++++++....+++..++|++|+.+++|+++++++++.+...+....+.
T Consensus 154 ~~~G~~D~~a~~~Gg~~~~~~~~~~--~~~~~~l~~~~~~~~~l~~~lvi~~t~~~~~a~~~l~~~~~~~~~~~~~~~~~ 231 (357)
T 3k85_A 154 LSGGKQDQYAAAFGGFNYMEFLQND--LVIVNPLKMKRWIVDELESSMVLYFTGRSRSSAAIINEQKKNTSEGNQTAIEA 231 (357)
T ss_dssp CCCCSHHHHHHHHCSEEEEEEETTT--EEEEEEECCCHHHHHHHHHTEEEECC---------------------CCTTHH
T ss_pred CCCcHHHHHHHHhCCceEEEEeCCC--ceeEEEEecChhhhhhcCceEEEEECCCcccHHHHHHHHHHHhhcCcHHHHHH
Confidence 9999999999999999988765543 34577888776543334568999999999999999998765543332233456
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
++.+.+.+.++++||.++|++.|+++|+++|++++++..++++|+++.+++.+++ |++|+||||||+|||+++|+++ +
T Consensus 232 ~~~i~~~~~~~~~aL~~~d~~~lg~lm~~~~~~l~~~~~~vs~p~ld~l~~~a~~~Ga~GaklsGaG~gG~vial~~~-~ 310 (357)
T 3k85_A 232 MHKIKQSAIDTKLALLKGDVGEFARILGEGWENKKKMAGAITNPMIQEAFDVATGAGAMAGKVSGAGGGGFIMFVVEP-T 310 (357)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTC-----------CCSCTTTTSCCSEEEECCCC---CEEEECCH-H
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcCCeEeEecccCCCCEEEEEecH-H
Confidence 7777788889999999999999999999999999886225899999999999987 8999999999999999999985 6
Q ss_pred hHHHHHHHHHhc
Q 001402 1057 SATELRRMLEKD 1068 (1084)
Q Consensus 1057 ~ae~i~~~L~~~ 1068 (1084)
.++++.++|++.
T Consensus 311 ~~~~~~~~l~~~ 322 (357)
T 3k85_A 311 RKEEVVRALNNL 322 (357)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHHC
Confidence 789999999875
No 2
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua}
Probab=100.00 E-value=1.5e-37 Score=358.00 Aligned_cols=309 Identities=18% Similarity=0.167 Sum_probs=239.5
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
.++++|||||+|+|||+||. +||.||++||+++.+ +.++++++. .+.+.........++++.. + ...
T Consensus 6 ~i~~~APGrv~L~GEh~~~~-----~g~~~l~~Ai~~~~~----v~v~~~~~~--~i~s~~~~~~~~~~~~~~~-~-~~~ 72 (365)
T 3k17_A 6 KLQVKIPGKLYVAGEYAVVE-----SGHTAILTAVNRYIT----LTLEDSERN--ELWIPHYENPVSWPIGGEL-K-PDG 72 (365)
T ss_dssp CEEEEEEEEEEEECTTGGGS-----TTCEEEEEEEEEEEE----EEEEECSSC--EEECTTCSSCBCCCTTSCC-C-CSC
T ss_pred EEEEEecceEEEecccEEec-----CCCEEEEEEccCcEE----EEEEECCCc--EEEecCCCcceeeecccCC-C-CCC
Confidence 58899999999999999993 299999999999875 778887665 3555433211111111110 1 122
Q ss_pred ChHHHHHHHHHHhh-hhhhhcccccCEEEEEEecCCC----CCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 819 DPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPR----GSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 819 ~~~~lvkaal~~~g-~~~~~~~~~~G~~I~i~S~IP~----GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
++++|+++++..+. .+.+.+....|++|++.++||. ++|||||||+++|++.|+++++++++++++|+++|..+|
T Consensus 73 ~~~~yv~~~i~~~~~~~~~~g~~~~g~~i~i~s~iP~~~g~~~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~~a~~~E 152 (365)
T 3k17_A 73 EHWTFTAEAINIATTFLKSEGIELTPVKMVIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSH 152 (365)
T ss_dssp GGGHHHHHHHHHHHHHHHHTTCCCCCEEEEEEESSBCTTSCBCSSCHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCCCCCCCCCcccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 44599999987653 2222334457999999999996 569999999999999999999999999999999999999
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCc---------cc---------eeEEEEccCChhhhhccCcEEEEEEcCCcch
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGI---------PL---------RLQVIPLLASPQLILELQQRLLVVFTGQVRL 955 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~---------~~---------~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~ 955 (1084)
+.....+|.+||+++++||+++++.++.. .+ ...++++++++ + +++|++|+.+++
T Consensus 153 ~~~~g~~~g~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~l~~l~~~~w~~~~~~~l~~~~------~-~lll~~t~~~~s 225 (365)
T 3k17_A 153 LVVQGNGSCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPV------P-TFSVGWTGTPVS 225 (365)
T ss_dssp HHHHSSCCSHHHHHHHHCSEEEEECCCHHHHHHHHTTSCHHHHHHSCCTTCEEEEECCCS------S-EEEEEECSCCCC
T ss_pred HHhCCCCCcccHHHHhcCCEEEEecCCHHHhhhhcccchhhhhhccCCCCcceeeccCCc------c-cEEEEECCCccc
Confidence 85433666799999999999888632210 00 23567776553 5 899999999999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCC----CCCcHHHHHHHHHHc
Q 001402 956 AHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDP----HCSNEFVDRLFAFAD 1031 (1084)
Q Consensus 956 T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~----~vs~p~ld~li~~a~ 1031 (1084)
|.++++.+.......++.....++++.+.+.++.+||.++|++.|+++|+++|+.++.+.. .+++|++++|++.++
T Consensus 226 T~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~~gd~~~lg~lm~~~~~~l~~l~v~~~~~is~p~ld~l~~~a~ 305 (365)
T 3k17_A 226 TGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIKENRRILQELGTKAGVNIETSLLKELADSAE 305 (365)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhhhhcCCcccCHHHHHHHHHHH
Confidence 9999877644332222234456777777788999999999999999999999999988752 348999999999998
Q ss_pred C-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc
Q 001402 1032 P-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1032 ~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~ 1068 (1084)
+ |++ +||||||+|||+++|+++++.++++.++|++.
T Consensus 306 ~~Ga~-ak~sGAGgGg~vial~~~~~~~~~l~~~l~~~ 342 (365)
T 3k17_A 306 NMGGA-GKSSGSGGGDCGIAFSKTKELAEKLVNEWEKL 342 (365)
T ss_dssp HTTSE-EEECTTCSSSEEEEEESSHHHHHHHHHHHHHT
T ss_pred hcCCE-EEecCCCCCCEEEEEECCHHHHHHHHHHHHHC
Confidence 7 777 99999999999999999877889999999876
No 3
>2pg9_A Phosphomevalonate kinase; GHMP kinase superfamily, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A* 3gon_A*
Probab=100.00 E-value=3.6e-37 Score=351.52 Aligned_cols=307 Identities=18% Similarity=0.205 Sum_probs=243.5
Q ss_pred eEEEEeceEEeeecccc-ccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWS-DTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~t-D~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
.++++|||||+|+|||+ ||| ||.|+++||+++.+ ++++++++ +++.++.... .++ + .| .
T Consensus 3 mi~~~aPgkv~L~GeH~v~y~------G~~~l~~Ai~~~~~----v~v~~~~~--~~i~s~~~~~----~~~-~-~~--~ 62 (337)
T 2pg9_A 3 MIAVKTCGKLYWAGEYAILEP------GQLALIKDIPIYMR----AEIAFSDS--YRIYSDMFDF----AVD-L-RP--N 62 (337)
T ss_dssp CEEEEEEEEEEEECTTGGGST------TCEEEEEEEEEEEE----EEEEECSS--CEEEETTSSS----CBC-S-SC--C
T ss_pred eEEEeeCceEEEeccceEecC------CCEEEEEEccccEE----EEEEeCCc--EEEecCCCCc----eee-e-cC--C
Confidence 37899999999999999 776 99999999999875 77777653 5666654321 111 1 11 1
Q ss_pred CChHHHHHHHHHHhh-hhhhhcccccCEEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 818 NDPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRG---SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g-~~~~~~~~~~G~~I~i~S~IP~G---sGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
++| +|+++++..+. ...+.+....||+|++.|+||.| +|||||||+++|++.|+++++++++++++|+++|..+|
T Consensus 63 ~~~-~~v~~~i~~~~~~~~~~g~~~~g~~i~i~s~iP~~g~k~GLgSSaa~~va~~~al~~~~~~~l~~~~l~~la~~~E 141 (337)
T 2pg9_A 63 PDY-SLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVL 141 (337)
T ss_dssp TTT-HHHHHHHHHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhcCCCCCCEEEEEEccCCCCCCCccccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 234 79988887653 11112335679999999999999 99999999999999999999999999999999999999
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCccc-----------------eeEEEEccCChhhhhccCcEEEEEEcCCcchH
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPL-----------------RLQVIPLLASPQLILELQQRLLVVFTGQVRLA 956 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~-----------------~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T 956 (1084)
.+.+.++|.+||+++++||++++...+.... ...++++++++ +.+++|++|+.+++|
T Consensus 142 ~~~~~~~~~~D~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~------~~~lvl~~~~~~~~T 215 (337)
T 2pg9_A 142 LKRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTL------ECDFLVGWTKEVAVS 215 (337)
T ss_dssp HHTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCS------CCEEEEEECCCCCCH
T ss_pred HHhCCCCCHHHHHHHHhCCEEEEecCChHHhhhhhcccchhhhcccccccceeeecCCC------CceEEEEECCCccch
Confidence 9899999999999999999988864332100 13567776553 579999999999999
Q ss_pred HHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCC
Q 001402 957 HQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCC 1035 (1084)
Q Consensus 957 ~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~ 1035 (1084)
.++++.+.+.+ + .+.++++.+++.++.+||.++|++.|+++|+++|+.++.+.+.+++|+++++++.+++ |++
T Consensus 216 ~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~aL~~~d~~~lg~~m~~~~~~l~~l~~~v~~p~l~~l~~~a~~~Ga~ 289 (337)
T 2pg9_A 216 SHMVQQIKQNI---N---QNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAV 289 (337)
T ss_dssp HHHHHHHGGGC---C---HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEE
T ss_pred HHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHHHHHHHCCCE
Confidence 99887754321 1 1345666777888999999999999999999999999988655899999999999987 788
Q ss_pred eEEEcCCCccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1036 GYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1036 GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
+||||||||||+++|+++++.++++.++|++.+ +. ..|..++.
T Consensus 290 -ak~sGaGgGg~vial~~~~~~~~~~~~~l~~~g-~~-~~~~~~~~ 332 (337)
T 2pg9_A 290 -AKSSGAGGGDCGIALSFDAQSTKTLKNRWADLG-IE-LLYQERIG 332 (337)
T ss_dssp -EEECTTCSSSEEEEEECSHHHHHHHHHHHHHTT-CE-EEEEEEC-
T ss_pred -EEEeCCCCccEEEEEECCHHHHHHHHHHHHHCC-CE-EEEEeecc
Confidence 999999999999999998778999999998763 32 34555543
No 4
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei}
Probab=100.00 E-value=1e-35 Score=337.25 Aligned_cols=300 Identities=19% Similarity=0.222 Sum_probs=234.5
Q ss_pred CCCCCCeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCC
Q 001402 733 HPFQPRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIA 812 (1084)
Q Consensus 733 ~~~~~~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~ 812 (1084)
.|..++.++++|||||+|+|+|+|++ ||.+|++||+++.+ +++++.++ +++.+... .. .+
T Consensus 15 ~~~~~~mi~~~APgkinL~GeH~~~~------Gg~~l~~aI~~~~~----v~v~~~~~--i~i~~~~~----~~---~~- 74 (321)
T 4hac_A 15 VPRGSHMVSCSAPGKIYLFGEHAVVY------GETAIACAVELRTR----VRAELNDS--ITIQSQIG----RT---GL- 74 (321)
T ss_dssp CCCSCCCEEEEEEEEEEEECTTTGGG------TCCEEEEEEEEEEE----EEEEECSS--EEEEETTE----EE---SS-
T ss_pred cCCCCCEEEEEeeEEEEEEccCEEEc------CCEEEEEEeccCEE----EEEEECCC--EEEEECCC----Cc---cc-
Confidence 45556679999999999999999996 99999999999875 67776543 77765432 01 11
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 001402 813 TPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 892 (1084)
Q Consensus 813 ~p~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~ 892 (1084)
+.+.++| ++.+...+. ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+
T Consensus 75 -~~~~~~~---~~~~~~~l~----~~~~~~g~~i~i~~~iP~g~GLGSSsa~~va~~~al~~l~~~~l~~~~l~~la~~~ 146 (321)
T 4hac_A 75 -DFEKHPY---VSAVIEKMR----KSIPINGVFLTVDSDIPVGSGLGSSAAVTIASIGALNELFGFGLSLQEIAKLGHEI 146 (321)
T ss_dssp -CTTTSHH---HHHHHHHHT----TTSCCCCEEEEEEECCCSCTTCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred -ccchhHH---HHHHHHHHH----HhCCCCCEEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 1112234 444443332 12245799999999999999999999999999999999999999999999999999
Q ss_pred HHh-cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcC
Q 001402 893 EQL-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD 971 (1084)
Q Consensus 893 E~~-~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~ 971 (1084)
|+. .|. +|.+||+++++||+.++ .++. ++.+| +++++|++|+.+++|.++++.+.......+
T Consensus 147 e~~~~g~-~~~~D~~~~~~Gg~~~~--~~~~-------~l~~p-------~~~~vlv~p~~~~sT~~~~~~~~~l~~~~~ 209 (321)
T 4hac_A 147 EIKVQGA-ASPTDTYVSTFGGVVTI--PERR-------KLKTP-------DCGIVIGDTGVFSSTKELVANVRQLRESYP 209 (321)
T ss_dssp HHHHHSC-CCSHHHHHHHHCSEEEE--TTCC-------EECCC-------CCEEEEEECCCCCCHHHHHHHHHHHHHHCH
T ss_pred HHHhcCC-CcHHHHHHHHcCCeEEE--cCCc-------eeccC-------CCEEEEEECCCCccHHHHHHHHHHHHhcCH
Confidence 985 455 67899999999999887 3342 12222 468999999999999998876532221111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEE
Q 001402 972 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 972 ~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~via 1050 (1084)
....+.+.++.+++.++.+||.++|++.|+++|+++|..++.+. +++|+++++++.+++ |++|+||||||+|||+++
T Consensus 210 ~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~~~~~~--v~~p~l~~l~~~a~~~Ga~ga~~SGaG~GG~v~a 287 (321)
T 4hac_A 210 DLIEPLMTSIGKISRIGEQLVLSGDYASIGRLMNVNQGLLDALG--VNILELSQLIYSARAAGAFGAKITGAGGGGCMVA 287 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT--CCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHCCCCEEEECccCCCCEEEE
Confidence 11334566777778889999999999999999999988877774 789999999999987 899999999999999999
Q ss_pred EEcChhhHHHHHHHHHhcCCCCcEEEEeecCCC
Q 001402 1051 LAKDAESATELRRMLEKDSNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1051 L~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~~~ 1083 (1084)
|+ +++.++++.+.|++. ..++|.++++.+
T Consensus 288 l~-~~~~a~~~~~~l~~~---g~~v~~~~~~~~ 316 (321)
T 4hac_A 288 LT-APEKCNQVAEAVAGA---GGKVTITKPTEQ 316 (321)
T ss_dssp EE-CSTTHHHHHHHHHHT---TCEEEEECBCSC
T ss_pred Ec-CHHHHHHHHHHHHhC---CCeEEEEEECCC
Confidence 99 457899999999875 357888887654
No 5
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Probab=100.00 E-value=5e-36 Score=356.21 Aligned_cols=310 Identities=19% Similarity=0.240 Sum_probs=230.8
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEc--CCCcEEEEeCCCC-ceeeecC--CC--CC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETT--KMSGVLISDDAGN-QLHIEDL--TP--IA 812 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~--~~~~i~i~s~~~~-~~~~~~l--~~--l~ 812 (1084)
++++|||||+|+||||||+ ||.||++||+++++ +.++++ ++..|++.+.+.. ....+++ ++ +.
T Consensus 40 ~v~~APGRVnLiGEHtDyn------gG~VLp~AI~~~~~----vav~~~~~~d~~i~i~S~~~~~~~~~~~l~~~~~~~~ 109 (520)
T 3v2u_C 40 FIARSPGRVNLIGEHIDYC------DFSVLPLAIDVDML----CAVKILDEKNPSITLTNADPKFAQRKFDLPLDGSYMA 109 (520)
T ss_dssp EEEEEEEEEEEECTTCGGG------TCCBEEEEEEEEEE----EEEEECCCSSCEEEEEESSTTSCCEEEECCTTCCCCC
T ss_pred EEEEcceeEEEeccCeeeC------CCEEEEEEeecceE----EEEEeccCCCCEEEEEECCCCCCceEEEeccCccccc
Confidence 6789999999999999996 99999999999986 778887 7788988875432 1122333 21 11
Q ss_pred CCCCCCChHHHHHHHHHHh-hhhhhh------cccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHh---CCCCCH
Q 001402 813 TPFDHNDPFRLVKSALLVT-GVIHEK------LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQIT---DGDQSN 882 (1084)
Q Consensus 813 ~p~~~~~~~~lvkaal~~~-g~~~~~------~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~---g~~ls~ 882 (1084)
.......|.+|+++++..+ ..+.+. +....||++.|.|+||.|+|| |||+++|++.|++.++ +..+++
T Consensus 110 i~~~~~~W~~Yv~g~i~~v~~~l~~~~~~~~~g~~~~G~~i~i~s~vP~gsGL--SAA~~va~~~Al~~~~~g~~~~l~~ 187 (520)
T 3v2u_C 110 IDPSVSEWSNYFKCGLHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGL--SSAFTCAAALATIRANMGKNFDISK 187 (520)
T ss_dssp CCTTSCCHHHHHHHHHHHHHHHHHHHCHHHHSSSCCCCEEEEEEECCCTTSSH--HHHHHHHHHHHHHHHHHCTTCCCBH
T ss_pred cCcccccHHHHHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCCCCH--HHHHHHHHHHHHHHHhhccCCCCCH
Confidence 1113357999999976432 222111 124579999999999999999 9999999999999998 778999
Q ss_pred HHHHHHHHHHHHhcCCCCcccchhhhcccc---eEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCC---cchH
Q 001402 883 ENVARLVLLLEQLMGTGGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLA 956 (1084)
Q Consensus 883 ~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG---~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~---tr~T 956 (1084)
.+|+++++.+|+++|.+||+|||+++++|+ ..++++.+. +.+.++++|+- ...+..|+|++|+. ++.+
T Consensus 188 ~~la~la~~aE~~vG~~~G~mDQ~as~~G~~g~~l~id~~~~----l~~~~v~~p~~--~~~~~~~vI~ns~v~~~k~~l 261 (520)
T 3v2u_C 188 KDLTRITAVAEHYVGVNNGGMDQATSVYGEEDHALYVEFRPK----LKATPFKFPQL--KNHEISFVIANTLVKSNKFET 261 (520)
T ss_dssp HHHHHHHTTGGGGGTCCCCSHHHHHHHHCBTTBEEEEECSSS----CEEEEECCCCC--SSCEEEEEEEECCCCCCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCchhhHHHHHhCCCCeEEEEEcCCC----ceeEEeeCCCc--cCCCeEEEEEECCCccccccc
Confidence 999999999999899999999999999998 788877652 24567666530 01256899999998 3422
Q ss_pred ---------------HHHHHH----------------------HHHH--------------------------------H
Q 001402 957 ---------------HQVLQK----------------------VVTR--------------------------------Y 967 (1084)
Q Consensus 957 ---------------~~iL~~----------------------v~~~--------------------------------~ 967 (1084)
..+|.+ +... .
T Consensus 262 a~s~YN~Rr~eCe~Aa~~L~~~~g~~~~~~~~~~~~~~~sLRdv~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~ 341 (520)
T 3v2u_C 262 APTNYNLRVIEVTVAANALATRYSVALPSHKDNSNSERGNLRDFMDAYYARYENQAQPWNGDIGTGIERLLKMLQLVEES 341 (520)
T ss_dssp TTTTHHHHHHHHHHHHHHHHHHTTBCCCCCCSCSSCTTCCHHHHHHHHHHHHCTTSCCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHhhCCcccccccccccccccHHHHhHhhhhhccccccccccchhhHHHHHHHHHHHHHHH
Confidence 122221 1000 0
Q ss_pred hhcC-----------------h------------------HHHHHHHHHHH--HHHHHHHHHhhc-------CHHHHHHH
Q 001402 968 LQRD-----------------N------------------LLISSIKRLTE--LAKNGRDALMNC-------DVDELGKI 1003 (1084)
Q Consensus 968 ~~~~-----------------~------------------~~~~~l~~l~~--~a~~~~~AL~~g-------D~~~lg~l 1003 (1084)
+... + ...++.|.+.+ .+.++.+||+++ |++.||++
T Consensus 342 l~~~~~~yt~~e~~~~l~~~~~~l~~~~l~~~~~~~~~~~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~l 421 (520)
T 3v2u_C 342 FSRKKSGFTVHEASTALNCSREEFTRDYLTTFPVRFQVLKLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRL 421 (520)
T ss_dssp HTTCTTCBCHHHHHHHTTSCHHHHHHHHTSSSCEEESCBCHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHH
T ss_pred hhhccccccHHHHHHhhcCChhhhhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHH
Confidence 0000 0 11233333333 266788899997 59999999
Q ss_pred HHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc--ChhhHHHHHHHHHhc
Q 001402 1004 MLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK--DAESATELRRMLEKD 1068 (1084)
Q Consensus 1004 m~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~--~~~~ae~i~~~L~~~ 1068 (1084)
|+++|.+++.++ ++++|++|.|++++++ |++|+||||||+|||+++|++ +++.++++.+.|++.
T Consensus 422 m~~sH~slr~~~-~vS~peld~lv~~a~~~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~ 488 (520)
T 3v2u_C 422 MNESQASCDKLY-ECSCIETNQICSIALANGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEK 488 (520)
T ss_dssp HHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc-CCCcHHHHHHHHHHHhCCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHH
Confidence 999999999998 4999999999999987 899999999999999999993 347788888887654
No 6
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A
Probab=100.00 E-value=1.5e-35 Score=336.62 Aligned_cols=308 Identities=17% Similarity=0.194 Sum_probs=237.9
Q ss_pred EEEEeceEEeeecccccc-CCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDT-PPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~-~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
+.|+|||||.|+|||... + |+.+|.+||+++.+ ++++++++..| .++.... .+ ++ ..+
T Consensus 2 i~v~apGKviL~GEhaVv~~------G~~Ala~ai~~~~~----v~i~~~~~~~i--~~~~~~~----~~-~~----~~~ 60 (335)
T 3gon_A 2 IAVKTCGKLYWAGEYAILEP------GQLALIKDIPIYMR----AEIAFSDSYRI--YSDMFDF----AV-DL----RPN 60 (335)
T ss_dssp EEEEEEEEEEEECTTGGGST------TCEEEEEEEEEEEE----EEEEECSSCEE--EETTSSS----CB-CS----SCC
T ss_pred EEEEECCEEEEEeeeeEEcC------CCcEEEEEecceEE----EEEEECCCCEE--EEeCCCc----cc-cc----CcC
Confidence 789999999999999655 3 88899999999875 77888776544 3333221 00 11 112
Q ss_pred ChHHHHHHHHHHhh-hhhhhcccccCEEEEEEecCCCC---CCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 819 DPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRG---SGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 819 ~~~~lvkaal~~~g-~~~~~~~~~~G~~I~i~S~IP~G---sGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
.++++++.++..+. .+.+.....+|++++|.|++|.+ +|||||||+++|++.|+++++++++++++++++|..+|+
T Consensus 61 ~~~~~~~~~i~~~~~~l~~~~~~~~~~~i~I~s~lp~~~~~~GLgSSaa~~va~~~al~~~~~~~~~~~~l~~la~~~E~ 140 (335)
T 3gon_A 61 PDYSLIQETIALMGDFLAVRGQNLRPFSLAIYGKMEREGKKFGLGSSGSVVVLVVKALLALYNLSVDQNLLFKLTSAVLL 140 (335)
T ss_dssp TTTHHHHHHHHHHHHHHHHTTCCCCCEEEEEECCSEETTEECSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHcCCCCCceEEEEEecCCcccCCCCcchHHHHHHHHHHhhhhcccccchHHHHHHHHHHHHH
Confidence 34456666655432 22234455689999999999987 699999999999999999999999999999999999998
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccc-----------------eeEEEEccCChhhhhccCcEEEEEEcCCcchHH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPL-----------------RLQVIPLLASPQLILELQQRLLVVFTGQVRLAH 957 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~-----------------~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~ 957 (1084)
..+..+|.|||+++.+||.++++..+.... .+.++++..+. ...+++++++..++|+
T Consensus 141 ~~~g~~sg~D~a~a~~Gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~t~ 214 (335)
T 3gon_A 141 KRGDNGSMGDLACIAAEDLVLYQSFDRQKVAAWLEEENLATVLERDWGFSISQVKPTL------ECDFLVGWTKEVAVSS 214 (335)
T ss_dssp HTTCCSCSHHHHHHHHTSCEEEECCCHHHHHHHHHHSCHHHHHHSCCCCEEEECCCCS------CCEEEEEECCCCCCHH
T ss_pred HhcCCCCCCCcceeecCCeEEEEeCCccccceeecccchhheecccccceeEEcCCcc------ccceEEeecCChhhHH
Confidence 654434448999999999988875443210 23455655443 5689999999999999
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeE
Q 001402 958 QVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGY 1037 (1084)
Q Consensus 958 ~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~Ga 1037 (1084)
+++.++.+.. . ...+.++.+++.++.+||+++|++.||++|+++|+++++++..+++|+++.|++.+.+...|+
T Consensus 215 ~~v~~v~~~~---~---~~~~~~~~~~~~~~~~aL~~~d~~~lg~lm~~~h~~l~~l~~~is~p~ld~l~~~a~~~g~~a 288 (335)
T 3gon_A 215 HMVQQIKQNI---N---QNFLTSSKETVVSLVEALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVA 288 (335)
T ss_dssp HHHHHHGGGC---C---HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTTTTSSEEE
T ss_pred HHHHHHHHHh---H---HHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHhCCcEE
Confidence 9988764321 1 123556667788999999999999999999999999999876689999999999999844589
Q ss_pred EEcCCCccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEeecCC
Q 001402 1038 KLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1038 klSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~~ 1082 (1084)
|+||||||||+++|+++++.+++++++|+++ ++++ +|..++..
T Consensus 289 kltGAG~Ggc~ial~~~~~~~~~i~~~~~~~-Gi~~-~y~~~~g~ 331 (335)
T 3gon_A 289 KSSGAGGGDCGIALSFDAQSTKTLKNRWADL-GIEL-LYQERIGH 331 (335)
T ss_dssp EECTTCSSSEEEEEECSHHHHHHHHHHHHHT-TCEE-EEEEEC--
T ss_pred EEccccchheEEEEECCHHHHHHHHHHHHHC-CCcE-EeehhhcC
Confidence 9999999999999999888899999999987 3433 47776654
No 7
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A*
Probab=100.00 E-value=3.2e-35 Score=350.33 Aligned_cols=318 Identities=17% Similarity=0.152 Sum_probs=235.9
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCC-ceeeecCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGN-QLHIEDLTPIATPFDH 817 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~-~~~~~~l~~l~~p~~~ 817 (1084)
.++++||||++|+|||+||+ |+.||++||+++++ +.++++++..+++.+.... .....+++++......
T Consensus 55 ~~~~~APgrv~L~Geh~D~~------g~~vl~~AI~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~l~~~~~~ 124 (478)
T 2a2c_A 55 KFYVRAPGRVNIIGEHIDYC------GYSVLPMAVEQDVL----IAVEPVKTYALQLANTNPLYPDFSTSANNIQIDKTK 124 (478)
T ss_dssp SEEEEEEEEEEEECTTCGGG------TCCBEEEEEEEEEE----EEEEECSSSCEEEEESSTTSCCEEECCCCC--CCSS
T ss_pred CEEEEeceEEEEeccceeeC------CCeEEEEEecccEE----EEEEECCCCeEEEEECCCCCcceeccchhcccCCCc
Confidence 37899999999999999996 88899999999976 7788877777888765321 1111122333211123
Q ss_pred CChHHHHHHHHHHhh-hhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 001402 818 NDPFRLVKSALLVTG-VIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 896 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g-~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~ 896 (1084)
..|.+|+++++..+- .+. . ....|++|++.|+||.|+|||||||+++|++.|++.+++.++++++|+++|..+|++.
T Consensus 125 ~~~~n~v~~a~~~v~~~~~-~-~~~~g~~i~i~s~IP~g~GLgSSAA~~va~~~al~~~~~~~ls~~~l~~la~~~E~~~ 202 (478)
T 2a2c_A 125 PLWHNYFLCGLKGIQEHFG-L-SNLTGMNCLVDGNIPPSSGLSSSSALVCCAGLVTLTVLGRNLSKVELAEICAKSERYI 202 (478)
T ss_dssp CCHHHHHHHHHHHHHHHTT-C-CSCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGG
T ss_pred ccHHHHHHHHHHHHHHHHh-c-cCCCceEEEEECCCCCCCCchHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhc
Confidence 468899976665421 110 0 0257999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhhccc---ceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchH----------------H
Q 001402 897 GTGGGWQDQIGGLYP---GIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLA----------------H 957 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~G---G~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T----------------~ 957 (1084)
|.++|++||+++++| |+.++++.+ ..+.++++++ +..++|++|+.++++ +
T Consensus 203 g~~~g~~D~~a~~~G~~g~~~~i~f~~-----~~~~~~~~~~------~~~~vi~~s~~~~~t~~t~~yn~r~~e~~~A~ 271 (478)
T 2a2c_A 203 GTEGGGMDQSISFLAEEGTAKLIEFSP-----LRATDVKLPS------GAVFVIANSCVEMNKAATSHFNIRVMECRLAA 271 (478)
T ss_dssp TCCCCSHHHHHHHHCBTTBEEEEETTT-----TEEEEECCCT------TEEEEEEECCCCCCGGGSSHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHhccCCcEEEEEcCC-----CceEEecCCC------CcEEEEEeCCCcccccccchhHHHHHHHHHHH
Confidence 999999999999997 788887654 2457777664 468999999987743 2
Q ss_pred HHHHHH----------------------------HHHHhhcC----hH-----------------------------HHH
Q 001402 958 QVLQKV----------------------------VTRYLQRD----NL-----------------------------LIS 976 (1084)
Q Consensus 958 ~iL~~v----------------------------~~~~~~~~----~~-----------------------------~~~ 976 (1084)
++|++. +..+.... .+ ..+
T Consensus 272 ~~L~~~~~~~~~~~~~l~d~~~~~~~~~~~~v~~v~~~~~~~~~~~~~i~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~r 351 (478)
T 2a2c_A 272 KLLAKYKSLQWDKVLRLEEVQAKLGISLEEMLLVTEDALHPEPYNPEEICRCLGISLEELRTQILSPNTQDVLIFKLYQR 351 (478)
T ss_dssp HHHHHHTTCCTTTCCCHHHHHHHHTCCHHHHHHHHHHHSCSSCBCHHHHHHHHTCCHHHHHHHTSCGGGTTCCCBCHHHH
T ss_pred HHHHhhhcccccccchHHhhhhhhcccHHHHHHHHHHhcccccccHHHHHHHhCccHHHHHhhccccccccchhHHHHHH
Confidence 334321 00111100 00 011
Q ss_pred HHHHHH--HHHHHHHHHHhh---cCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEE
Q 001402 977 SIKRLT--ELAKNGRDALMN---CDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 977 ~l~~l~--~~a~~~~~AL~~---gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~via 1050 (1084)
..+.+. ..+.++++||.+ +|++.||++|+++|++++.++ ++++|+++++++++++ |++|+||||||||||+++
T Consensus 352 a~h~~~e~~rv~~~~~aL~~~~~~d~~~lg~lm~~sh~slr~l~-~vs~peld~l~~~a~~~Ga~GarltGAG~GG~via 430 (478)
T 2a2c_A 352 AKHVYSEAARVLQFKKICEEAPENMVQLLGELMNQSHMSCRDMY-ECSCPELDQLVDICRKFGAQGSRLTGAGWGGCTVS 430 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHTS-CCCCHHHHHHHHHHHHTTCSEEEECTTCSSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhcc-cCCCHHHHHHHHHHHhCCCcEEEeccCCCccEEEE
Confidence 112111 235678889998 999999999999999999988 4899999999999987 999999999999999999
Q ss_pred EEcChhhHHHHHHHHHhc----CC----C-CcEEEEeecC
Q 001402 1051 LAKDAESATELRRMLEKD----SN----F-NSEVYNWNIY 1081 (1084)
Q Consensus 1051 L~~~~~~ae~i~~~L~~~----~~----f-~v~v~~~~i~ 1081 (1084)
|+++ +.++++.+.|++. .+ + ..++|.++++
T Consensus 431 Lv~~-~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~p~ 469 (478)
T 2a2c_A 431 MVPA-DKLPSFLANVHKAYYQRSDGSLAPEKQSLFATKPG 469 (478)
T ss_dssp EEEG-GGHHHHHHHHHHHHHC---------CCSEEEECCB
T ss_pred EEcH-HHHHHHHHHHHHHHHHhcCccccCCCCcEEEEcCC
Confidence 9986 6677777777653 21 1 3467777654
No 8
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=7.7e-35 Score=342.02 Aligned_cols=316 Identities=17% Similarity=0.164 Sum_probs=234.7
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCC--ceeeecCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGN--QLHIEDLTPIATPFDH 817 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~--~~~~~~l~~l~~p~~~ 817 (1084)
++++|||||+|+|+|+|+. ||.+|++||+++.+ ++++++++..+.+.+.... ......++++. +...
T Consensus 49 ~~~~APgkv~L~Geh~d~~------G~~~l~~aI~l~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~-~~~~ 117 (419)
T 1pie_A 49 EYFFSPGRINLIGEHTDYN------GGYVFPASITIGTT----GLARLREDKKVKLYSENFPKLGVIEFDLDEVE-KKDG 117 (419)
T ss_dssp EEEEEEEEEEEECCSCTTT------TCEEEEEEEEEEEE----EEEEECSSSEEEEEETTCGGGCCEEEETTCTT-SCCT
T ss_pred EEEEeeEEEEEcccceeeC------CCEEEEEEEcccEE----EEEEECCCCEEEEEECCCCCcceeEEeccccc-CCCC
Confidence 7899999999999999994 88999999999975 7788877767777764331 11112233332 1122
Q ss_pred CChHHHHHHHHHHhhhhhhhcccc-cCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-
Q 001402 818 NDPFRLVKSALLVTGVIHEKLIES-MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL- 895 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~~~~~~~~~-~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~- 895 (1084)
.+|.+|+++++..+. +.+... .|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+.
T Consensus 118 ~~~~n~v~~~~~~l~---~~g~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~E~~~ 194 (419)
T 1pie_A 118 ELWSNYVKGMIVMLK---GAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLNVPRLELVQLGQKTENDY 194 (419)
T ss_dssp TCTHHHHHHHHHHHH---HTTCCCCSCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHH---HhCCCCCCCEEEEEECCCCCCCChhHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHh
Confidence 578999998887653 122233 799999999999999999999999999999999999999999999999999984
Q ss_pred cCCCCcccchhhhcccc---eEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHH---------------
Q 001402 896 MGTGGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAH--------------- 957 (1084)
Q Consensus 896 ~gt~~G~~Dq~a~~~GG---~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~--------------- 957 (1084)
.|.++|+|||+++++|| ..++++.+. .+++++++. .++.++|++|+.+++|.
T Consensus 195 ~G~~~G~~D~~~~~~Gg~~~~~~~d~~~~-----~~~~l~~~~-----~~~~~vl~~~~~~~~t~~~~y~~r~~~~~~a~ 264 (419)
T 1pie_A 195 IGVNSGILDQFAIGFGEVKKAIELDCNTL-----KYEMVPVEL-----RDYDIVIMNTNKPRALTESKYNERFAETREAL 264 (419)
T ss_dssp TCCCCCSHHHHHHHHCBTTEEEEEETTTC-----CEEEEECCC-----TTEEEEEEECCCCCCTTCHHHHHHHHHHHHHH
T ss_pred cCCCccchhHHHHHhccCCeEEEeecCCC-----ceEEeecCC-----CCcEEEEEECCCccccccchHHHHHHHHHHHH
Confidence 78999999999999998 444543322 345665541 14689999999887653
Q ss_pred HHHHHH--HHHHhhcCh--------------HHHHHHHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCC
Q 001402 958 QVLQKV--VTRYLQRDN--------------LLISSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCS 1019 (1084)
Q Consensus 958 ~iL~~v--~~~~~~~~~--------------~~~~~l~~l~~--~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs 1019 (1084)
+++++. ++.+....+ ...+..+.+.+ .+.++.+||.++|++.||++|+++|..+++.+ +++
T Consensus 265 ~~l~~~~~v~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~v~e~~r~~~~~~al~~~d~~~lg~lm~~~~~~l~~~~-~~~ 343 (419)
T 1pie_A 265 KRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDY-EVT 343 (419)
T ss_dssp HHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTS-CCC
T ss_pred HHHhhccccCchhhCCHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhh-CCC
Confidence 222210 000000001 00111222222 26778899999999999999999999888855 489
Q ss_pred cHHHHHHHHHHcC--CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc----CCCCcEEEEeecC
Q 001402 1020 NEFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD----SNFNSEVYNWNIY 1081 (1084)
Q Consensus 1020 ~p~ld~li~~a~~--ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~----~~f~v~v~~~~i~ 1081 (1084)
+|+++++++.+++ |++|+||||||+|||+++|+++ +.++++.+.|++. ++....+|.++++
T Consensus 344 ~p~l~~l~~~a~~~~Ga~ga~lsGaG~Gg~v~al~~~-~~a~~~~~~l~~~~~~~~g~~~~~~~~~~~ 410 (419)
T 1pie_A 344 GLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAH-DNVSAFRKAVGQVYEEVVGYPASFYVAQIG 410 (419)
T ss_dssp CHHHHHHHHHHHHSTTEEEEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHHHHHHSSCCEEEECCBC
T ss_pred CHHHHHHHHHHHhcCCCceeeEecCCCCeEEEEEEch-hhHHHHHHHHHHHHHHhcCCCCeEEEEcCC
Confidence 9999999999875 7899999999999999999986 5677777777653 3456788888764
No 9
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7
Probab=100.00 E-value=1.8e-34 Score=336.80 Aligned_cols=316 Identities=18% Similarity=0.155 Sum_probs=235.0
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCce----eeecCCCCC--
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQL----HIEDLTPIA-- 812 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~----~~~~l~~l~-- 812 (1084)
.++++|||||+|+|+|+||. ||.||++||+++++ +.++++++..+++.+...... ....+++..
T Consensus 36 ~~~~~APgkv~L~Geh~Dy~------~~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 105 (399)
T 1wuu_A 36 ELAVSAPGRVNLIGEHTDYN------QGLVLPMALELMTV----LVGSPRKDGLVSLLTTSEGADEPQRLQFPLPTAQRS 105 (399)
T ss_dssp SEEEEEEEEEEEECTTCGGG------TCEEEEEEEEEEEE----EEEEEETTCEEEEEECCSSSCSCSEEEEECCCSSCC
T ss_pred CEEEEeeeeEEEeccccccC------CCEEEeEEecccEE----EEEEECCCCeEEEEECCCCCccccceEEecCccccc
Confidence 37899999999999999974 99999999999986 777777777788876433210 001121110
Q ss_pred CCCCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 001402 813 TPFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLL 892 (1084)
Q Consensus 813 ~p~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~ 892 (1084)
.+....+|.+|+++++..+ ......|++|++.|+||.|+|||||||+++|++.|+++++|.++++++|+++|..+
T Consensus 106 ~~~~~~~~~n~v~~a~~~l-----~~~~~~g~~i~i~s~IP~gaGLGSSaA~~vA~~~al~~l~~~~l~~~~l~~la~~~ 180 (399)
T 1wuu_A 106 LEPGTPRWANYVKGVIQYY-----PAAPLPGFSAVVVSSVPLGGGLSSSASLEVATYTFLQQLCPDSGTIAARAQVCQQA 180 (399)
T ss_dssp CCCCSSGGGHHHHHHHHHC-----SSSCCCEEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH
T ss_pred cccCCCCHHHHHHHHHHHh-----cCCCCCCeEEEEECCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 1112346889999988765 11234699999999999999999999999999999999999999999999999999
Q ss_pred HH-hcCCCCcccchhhhcccce---EEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHH-HH-------
Q 001402 893 EQ-LMGTGGGWQDQIGGLYPGI---KFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQ-VL------- 960 (1084)
Q Consensus 893 E~-~~gt~~G~~Dq~a~~~GG~---~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~-iL------- 960 (1084)
|+ +.|.++|+|||+++++||. .++++.+. .+++++++. .++.++|++|+.+++|.. .+
T Consensus 181 E~~~~G~~~G~~D~~~~~~Gg~~~~~~~~~~~~-----~~~~~~~~~-----~~~~~vl~~~~~~~~t~~~~y~~r~~~~ 250 (399)
T 1wuu_A 181 EHSFAGMPCGIMDQFISLMGQKGHALLIDCRSL-----ETSLVPLSD-----PKLAVLITNSNVRHSLASSEYPVRRRQC 250 (399)
T ss_dssp HHHHTCCCCCSHHHHHHHHCCTTEEEEEETTTC-----CEEEEECCC-----SSEEEEEEEEEEEC--CTTTHHHHHHHH
T ss_pred HHHhcCCCCccHHHHHHHhccCCeEEEEecCCC-----ceEEecCCC-----CCeEEEEEECCCccccccccHHHHHHHH
Confidence 98 5799999999999999994 44543322 245555431 257899999998887742 11
Q ss_pred HHHHHHH------------hh-----cChH-HHHHHHHHHHH--HHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCc
Q 001402 961 QKVVTRY------------LQ-----RDNL-LISSIKRLTEL--AKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSN 1020 (1084)
Q Consensus 961 ~~v~~~~------------~~-----~~~~-~~~~l~~l~~~--a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~ 1020 (1084)
....+.+ .. -++. ..+..+.+.+. +.++.+||.++|++.||++|+++|..+++.+ ++++
T Consensus 251 ~~a~~~l~~~~l~~~~~~~~~~~~~~l~~~~~~r~~~~~~e~~r~~~~~~al~~~d~~~lg~~m~~~h~~l~~~~-~~~~ 329 (399)
T 1wuu_A 251 EEVARALGKESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHRSLRDDY-EVSC 329 (399)
T ss_dssp HHHHHHTTCSSTTSCCHHHHTTGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTS-CCCC
T ss_pred HHHHHHhChhhhhcCCHHHHHHHHhhcCHHHHHHHHHHHhhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-cCCC
Confidence 1111111 00 0011 11123333333 6678899999999999999999988777544 4789
Q ss_pred HHHHHHHHHHcC--CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1021 EFVDRLFAFADP--YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1021 p~ld~li~~a~~--ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
|+++++++.+++ |++|+||||||+|||+++|+++ +.++++.+.|++..+....+|.+.++
T Consensus 330 p~l~~l~~~a~~~~Ga~ga~~sGaG~Gg~v~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~ 391 (399)
T 1wuu_A 330 PELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEA-SAAPHAMRHIQEHYGGTATFYLSQAA 391 (399)
T ss_dssp HHHHHHHHHHHTSTTEEEEEECSSCSEEEEEEEEEG-GGHHHHHHHHHHHCSSCCEEEEECCC
T ss_pred HHHHHHHHHHHhcCCceEEeeecCCCccEEEEEEcc-chHHHHHHHHHHHhCCCCcEEEEcCC
Confidence 999999999986 7899999999999999999986 67889999998876667788887764
No 10
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A
Probab=100.00 E-value=4.6e-34 Score=332.95 Aligned_cols=311 Identities=18% Similarity=0.209 Sum_probs=224.6
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCC-----
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT----- 813 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~----- 813 (1084)
.++++|||||+|+|||+||. ||.||++||+++++ +.++++++..+++.+.+.......+++++..
T Consensus 5 ~~~~~APgrv~L~Geh~d~~------g~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~ 74 (395)
T 1kvk_A 5 VLLVSAPGKVILHGEHAVVH------GKVALAVALNLRTF----LVLRPQSNGKVSLNLPNVGIKQVWDVATLQLLDTGF 74 (395)
T ss_dssp CEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECSSSEEEEEETTTTEEEEEEHHHHHTSCC--
T ss_pred cEEEEeCeEEEEecCCeeeE------CCEeeeeEeeccEE----EEEEECCCCeEEEEcCCCCceEEEEhHhhhhhhccc
Confidence 47899999999999999985 99999999999976 7788887777887754432111111111100
Q ss_pred --CC-----------------CCCChHHH-----HHHHHHHhhhhhhhcc--cccCEEEEEEecCCCCCCCChHHHHHHH
Q 001402 814 --PF-----------------DHNDPFRL-----VKSALLVTGVIHEKLI--ESMGLQIRTWANVPRGSGLGTSSILAAA 867 (1084)
Q Consensus 814 --p~-----------------~~~~~~~l-----vkaal~~~g~~~~~~~--~~~G~~I~i~S~IP~GsGLGSSSAlavA 867 (1084)
+. ...+|.+| +++++..+... ... ...|++|++.++||.|+|||||||+++|
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~--~~~~~~~~g~~i~i~s~iP~g~GLGSSaA~~va 152 (395)
T 1kvk_A 75 LEQGDVPAPTLEQLEKLKKVAGLPRDCVGNEGLSLLAFLYLYLAI--CRKQRTLPSLDIMVWSELPPGAGLGSSAAYSVC 152 (395)
T ss_dssp --------------CHHHHHHTSSCCCSCTTHHHHHHHHHHHHHH--HTTSSSCCCEEEEEEESSCTTSSSCHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHH--hccccCCCCEEEEEEecCCCCCCccHHHHHHHH
Confidence 00 01145555 34443322110 111 2569999999999999999999999999
Q ss_pred HHHHHHHHhCC-----CCC-------H---HHHHHHHHHHHH-hcCCCCcccchhhhcccceEEEecCCCccceeEEEEc
Q 001402 868 VVKALLQITDG-----DQS-------N---ENVARLVLLLEQ-LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPL 931 (1084)
Q Consensus 868 ~l~Al~~l~g~-----~ls-------~---~eLa~la~~~E~-~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl 931 (1084)
++.|++++++. +++ + .+|+++|..+|+ +.|.++|+ ||+++++||+.+++ ++ .++++
T Consensus 153 ~~~al~~l~~~~~~~~~l~~~~~~~~~~~l~~l~~~A~~~E~~~~G~~sG~-D~~~~~~Gg~~~~~--~~-----~~~~l 224 (395)
T 1kvk_A 153 VAAALLTACEEVTNPLKDRGSIGSWPEEDLKSINKWAYEGERVIHGNPSGV-DNSVSTWGGALRYQ--QG-----KMSSL 224 (395)
T ss_dssp HHHHHHHHTTSSCCGGGGCCSEECCCHHHHHHHHHHHHHHHHHHHSSCCSH-HHHHHHHCSEEEES--SS-----CEEEC
T ss_pred HHHHHHHHhCcccccccccccccccchhhHHHHHHHHHHhhheEecCCCCc-chHHhhhcceEEEc--CC-----Cceec
Confidence 99999999999 788 7 556667889998 57899999 99999999998863 33 34677
Q ss_pred cCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHh-------hcCHHHHHHHH
Q 001402 932 LASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDALM-------NCDVDELGKIM 1004 (1084)
Q Consensus 932 ~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL~-------~gD~~~lg~lm 1004 (1084)
+.++ +.+++|++|+.+++|+++++.+.......++.....++++.+++.++..++. ++|++.|+++|
T Consensus 225 ~~~~------~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~al~~~d~~~lg~lm 298 (395)
T 1kvk_A 225 KRLP------ALQILLTNTKVPRSTKALVAGVRSRLIKFPEIMAPLLTSIDAISLECERVLGEMAAAPVPEQYLVLEELM 298 (395)
T ss_dssp SCCC------CEEEEEEECCCCCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred cCCC------CcEEEEEECCCCCchHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHH
Confidence 6443 5689999999999999987765432211111111234555555555555554 48999999999
Q ss_pred HHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcCh---hhHHHHHHHHHhcCCCCcEEEEeec
Q 001402 1005 LEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA---ESATELRRMLEKDSNFNSEVYNWNI 1080 (1084)
Q Consensus 1005 ~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~---~~ae~i~~~L~~~~~f~v~v~~~~i 1080 (1084)
+++|..++.+ ++++|+++++++.+++ |+ |+||||||+|||+++|+++. +.++.+.+.+++. ..++|.+++
T Consensus 299 ~~~~~~l~~~--~~~~p~l~~l~~~a~~~Ga-ga~~sGaG~Gg~v~~l~~~~~~~~~~~~~~~~~~~~---g~~~~~~~~ 372 (395)
T 1kvk_A 299 DMNQHHLNAL--GVGHASLDQLCQVTAAHGL-HSKLTGAGGGGCGITLLKPGLERAKVEAAKQALTGC---GFDCWETSI 372 (395)
T ss_dssp HHHHHHHHHH--TCCCHHHHHHHHHHHHTTC-EEEECSSCSSSEEEEEECTTCCHHHHHHHHHHHHHT---TCEEEEEEE
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHHHcCC-ceeeccCCCCCEEEEEecCCCCHHHHHHHHHHHHHc---CCEEEEEec
Confidence 9999988875 4899999999999987 78 99999999999999999863 2345666677654 234777765
Q ss_pred C
Q 001402 1081 Y 1081 (1084)
Q Consensus 1081 ~ 1081 (1084)
.
T Consensus 373 ~ 373 (395)
T 1kvk_A 373 G 373 (395)
T ss_dssp S
T ss_pred C
Confidence 4
No 11
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A*
Probab=100.00 E-value=9e-33 Score=314.35 Aligned_cols=306 Identities=20% Similarity=0.208 Sum_probs=227.9
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcC-CCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTK-MSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~-~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
++++|||||+|+|+|.|+. ||.++.+||+++.+ +++++.+ +..+.+.+... .+ |....
T Consensus 14 ~~~~ApgKi~L~Geh~~~~------G~~~l~~ai~~~~~----v~v~~~~~~~~~~~~~~~~---------~~--~~~~~ 72 (332)
T 2hfs_A 14 GKNIGYGKVILFGEHFVVH------GAEAIVAGISEYTE----CRLEINPGVPGLQVDDQRP---------AI--PGYIA 72 (332)
T ss_dssp SCCEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEEETTCCSEEEEECCC---------CC--TTHHH
T ss_pred EEEEEeEEEEEecCCEEEc------CCeEEEEEecccEE----EEEEEcCCCCCeEEEecCc---------cc--ccccc
Confidence 6789999999999999985 99999999999875 6677653 34454432211 11 10000
Q ss_pred ChHHHH-HHHHHHhhhhhhhccc--ccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Q 001402 819 DPFRLV-KSALLVTGVIHEKLIE--SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL 895 (1084)
Q Consensus 819 ~~~~lv-kaal~~~g~~~~~~~~--~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~ 895 (1084)
...+++ +++...+.. .... ..|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+.
T Consensus 73 ~~~~~~~~a~~~~~~~---~g~~~~~~g~~i~i~~~iP~g~GLGSSsA~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~~ 149 (332)
T 2hfs_A 73 QKRDEQIKAHQLVLDH---LKVDLSGDGLKMFIGGPLVPSSGIGASASDVVAFSRALSELYQLNLTDEEVNLSAFVGEGG 149 (332)
T ss_dssp HHHHHHHHHHHHHHHH---TTBCCSSSEEEEEEECSCCCCTTSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHGGG
T ss_pred ccchhHHHHHHHHHHH---cCCccCCCceEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 112222 332222211 1111 2689999999999999999999999999999999999999999999999999985
Q ss_pred -cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 896 -MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 896 -~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
.|.++|. |++++++||+..+....+. ..+.++++++ +++++|++|+.+++|+++++++.......++..
T Consensus 150 ~~G~~~G~-D~~~~~~Gg~~~~~~~~g~---~~~~~~~~~~------~~~~vl~~~~~~~~T~~~~~~~~~~~~~~~~~~ 219 (332)
T 2hfs_A 150 YHGTPSGA-DNTAATYGGLILYRRQNGK---SVFKPIAFQQ------RLYLVVVGTGINASTAKVVNDVHKMKQQQPVQF 219 (332)
T ss_dssp SSSCCCSH-HHHHHHHCEEEEEEECSSS---EEEEEECCCS------CEEEEEEECSCCCCHHHHHHHHHHHHHHCHHHH
T ss_pred hcCCCCcH-hHHHHhcCCeEEEecCCCC---cceeeecCCC------CcEEEEEECCCCccHHHHHHHHHHHHHhCHHHH
Confidence 5789998 9999999999877644442 2456776553 568999999999999999887543222111111
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 1053 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~ 1053 (1084)
...++++.+.+.++.++|.++|++.|+++|+++|..++.+. +++|+++++++.+++ |++|++|||||+|||+++|++
T Consensus 220 ~~~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~~--~~~p~l~~l~~~~~~~Ga~ga~~sGaG~gg~v~~l~~ 297 (332)
T 2hfs_A 220 KRLYDNYTHIVSQAREALQKGDLQRLGQLMNANHDLCRQID--VSCRELESIVQTCRTYGALGAKLSGTGRGGIAVALAA 297 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHTTCSEEEEESSCSSSEEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHcCCceEEeccCCCCcEEEEEec
Confidence 12345555667788999999999999999999988888863 789999999999987 899999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1054 DAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1054 ~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
+++.++++.+.|++.......+|.+.+.
T Consensus 298 ~~~~a~~~~~~l~~~~~~~~~~~~~~~~ 325 (332)
T 2hfs_A 298 SSDQRDAIVKGLKAKCPEAKFIWRYTVQ 325 (332)
T ss_dssp SHHHHHHHHHHHHHHCTTCCEEEEEEEC
T ss_pred CcccHHHHHHHHHHHHhcCCceEEEEec
Confidence 7666788998888753322234554443
No 12
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A*
Probab=100.00 E-value=9.9e-33 Score=316.06 Aligned_cols=311 Identities=21% Similarity=0.175 Sum_probs=225.6
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
++++|||||+|+|+|+|| |||.++++||+++.+ +++++.++..+++.+.... ...++ +..| +.+.
T Consensus 2 ~~~~aP~ki~L~Ge~~d~------~~~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~--~~~~~--l~~~-~~~~ 66 (350)
T 2cz9_A 2 IKVKSPGRVNLIGEHTDY------TYGYVMPMAINLYTK----IEAEKHGEVILYSEHFGEE--RKFSL--NDLR-KENS 66 (350)
T ss_dssp EEEEEEEEEEEECTTCGG------GTCEEEEEEEEEEEE----EEEEEESSEEEEETTTTEE--EEECT--TCCC-CCSS
T ss_pred eEEEeccEEEEeecChhh------CCCEEEEEEeeceEE----EEEEECCCCeEEEEECCCC--ccccc--cCCC-CCCc
Confidence 678999999999999998 489999999999875 7777766555655433211 01111 1112 2346
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MGT 898 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~gt 898 (1084)
|.+++++++..+.. ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|.+ .+.
T Consensus 67 ~~~~~~~~~~~l~~---~~~~~~g~~i~i~s~IP~g~GLGSSaA~~vA~~~al~~l~~~~l~~~el~~la~~~e~~~~g~ 143 (350)
T 2cz9_A 67 WIDYVKGIFWVLKE---SDYEVGGIKGRVSGNLPLGAGLSSSASFEVGILETLDKLYNLKLDSLSKVLLAKKAENEFVGV 143 (350)
T ss_dssp THHHHHHHHHHHHH---TTCCCCEEEEEEECSCCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHh---cCCCCCCeEEEEECCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhcCC
Confidence 78899988765531 22334789999999999999999999999999999999999999999999999999985 688
Q ss_pred CCcccchhhhcccc---eEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHH-HHHHHH-------HH
Q 001402 899 GGGWQDQIGGLYPG---IKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQV-LQKVVT-------RY 967 (1084)
Q Consensus 899 ~~G~~Dq~a~~~GG---~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~i-L~~v~~-------~~ 967 (1084)
++|++|++++.+|| +.++++.+. .++++++++ +++++|++|+.++.+... +..... .+
T Consensus 144 ~~gi~d~~~~~~g~~~~~~~~d~~~~-----~~~~l~~~~------~~~~vl~~~~~~~~~~t~~~~~r~~~~~~a~~~~ 212 (350)
T 2cz9_A 144 PCGILDQFAVVFGREGNVIFLDTHTL-----DYEYIPFPK------DVSILVFYTGVRRELASSEYAERKHIAEESLKIL 212 (350)
T ss_dssp CCCSHHHHHHHHCCTTEEEEEETTTC-----CEEEEECCT------TEEEEEEECSCC----CHHHHHHHHHHHHHHHHH
T ss_pred CccchhHHHHHhcCCCeEEEEecCCC-----cEEEEcCCC------CcEEEEEECCCCCccccchHHHHHHHHHHHHHHh
Confidence 99999999999986 444443322 346666553 468999999988643221 221110 00
Q ss_pred -----h--------hcChHHH-HHHHHHHH--HHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHc
Q 001402 968 -----L--------QRDNLLI-SSIKRLTE--LAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFAD 1031 (1084)
Q Consensus 968 -----~--------~~~~~~~-~~l~~l~~--~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~ 1031 (1084)
. .-++... +..+.+.+ .+..+.+||.++|++.|+++|+++|..++..+ ++++|+++++++.++
T Consensus 213 ~~~~lr~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~-~~~~p~l~~l~~~~~ 291 (350)
T 2cz9_A 213 GKGSSKEVREGELSKLPPLHRKFFGYIVRENARVLEVRDALKEGNVEEVGKILTTAHWDLAKNY-EVSCKELDFFVERAL 291 (350)
T ss_dssp TCSCGGGCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHH
T ss_pred ChhhhhhCCHHHHhhCCHHHHHHHHHHhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHH
Confidence 0 0011111 11122222 25678899999999999999999998877744 378999999999998
Q ss_pred C-CCCeEEEcCCCccceeEEEEcChhhHHHHHHHHHh----cCCCCcEEEEeecC
Q 001402 1032 P-YCCGYKLVGAGGGGFALLLAKDAESATELRRMLEK----DSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1032 ~-ga~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~----~~~f~v~v~~~~i~ 1081 (1084)
+ |++|+||||||+|||+++|+++ +.++++.+.|++ .+++..++|.++++
T Consensus 292 ~~Ga~ga~lsGaG~G~~v~~l~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 345 (350)
T 2cz9_A 292 KLGAYGARLTGAGFGGSAIALVDK-EDAETIGEEILREYLKRFPWKARHFIVEPS 345 (350)
T ss_dssp HTTCSEEEECSSCSSSEEEEEEEG-GGHHHHHHHHHHHHHHHCCSCCEEEEECEE
T ss_pred HcCCCEEEEecCCCceEEEEEEch-hhHHHHHHHHHHHHHHhhCCCCcEEEecCC
Confidence 7 8999999999999999999986 456666666554 34678889888764
No 13
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus}
Probab=100.00 E-value=9.1e-33 Score=311.04 Aligned_cols=299 Identities=21% Similarity=0.226 Sum_probs=227.9
Q ss_pred CeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecC-cccceeEEEEEcCCCc-EEEEeCCCCceeeecCCCCCCCC
Q 001402 738 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLE-SSLPIGTIIETTKMSG-VLISDDAGNQLHIEDLTPIATPF 815 (1084)
Q Consensus 738 ~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~-~~~pi~v~v~~~~~~~-i~i~s~~~~~~~~~~l~~l~~p~ 815 (1084)
+.++++|||||+|+|+|+||+ |+.++.++|+++ .+ +++++.++.. +.+.+.... . ++ +
T Consensus 5 ~~~~~~APgkinL~Ge~~d~~------g~~~l~~ai~~~~~~----v~v~~~~~~~~i~~~~~~~~----~---~~--~- 64 (308)
T 2x7i_A 5 RKGYGESTGKIILIGEHAVTF------GEPAIAVPFNAGKIK----VLIEALESGNYSSIKSDVYD----G---ML--Y- 64 (308)
T ss_dssp CEEEEEEEEEEEEEEBTTCCT------TSCEEEEEEEEEEEE----EEEEECCTTCCCEEEEEECS----S---CC--C-
T ss_pred cceEEEEeeEEEEEecCeeec------CCeEEEEEEcCCEEE----EEEEECCCCCeeEEEecCCC----C---Ch--h-
Confidence 458899999999999999985 889999999985 54 6777766544 555432110 0 11 1
Q ss_pred CCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-
Q 001402 816 DHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ- 894 (1084)
Q Consensus 816 ~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~- 894 (1084)
...+|.++++.++..+. +. ..|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+
T Consensus 65 ~~~~~~~~v~~~~~~~~----~~--~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~E~~ 138 (308)
T 2x7i_A 65 DAPDHLKSLVNRFVELN----NI--TEPLAVTIQTNLPPSRGLGSSAAVAVAFVRASYDFLGKSLTKEELIEKANWAEQI 138 (308)
T ss_dssp CTTSCHHHHHHHHHHHT----TC--CSCEEEEEEECCCTTSSSCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHH----hh--CCCeEEEEeccCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 11257888888876542 11 248999999999999999999999999999999999999999999999999998
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
..|.++|. |+.++.+||..+++ .+. .+++++.+ ++..++|++++.+++|+++++.+.+.. ...+..
T Consensus 139 ~~g~~sG~-d~~~~~~g~~~~~~--~g~----~~~~~~~~------~~~~~vi~~~~~~~sT~~~~~~l~~~~-~~~~~~ 204 (308)
T 2x7i_A 139 AHGKPSGI-DTQTIVSGKPVWFQ--KGH----AETLKTLS------LDGYMVVIDTGVKGSTRQAVHDVHKLC-EDPQYM 204 (308)
T ss_dssp HHSSCCHH-HHHHHHHTSCEEEE--TTE----EEECSCCC------BSSEEEEEECCC--CCSCCCC---------CCHH
T ss_pred HCCCCchH-HHHHhhCCceEEEE--cCC----CceEeccC------CCceEEEEECcCCCCHHHHHHHHHHHH-hcCchH
Confidence 46889997 78888899988776 332 35666543 257899999998777765543322111 112222
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 1053 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~ 1053 (1084)
.+ +.++.+++.++.++|.++|++.|+++|+++|+.++.+ ++++|+++++++.+++ |++|++|||||+|||+++|++
T Consensus 205 ~~-~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~GG~v~~l~~ 281 (308)
T 2x7i_A 205 SH-VKHIGKLVLRASDVIEHHKFEALADIFNECHADLKAL--TVSHDKIEQLMKIGKENGAIAGKLTGAGRGGSMLLLAK 281 (308)
T ss_dssp HH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHTTCSEEEESBTTTCSSEEEEES
T ss_pred HH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHCCCcEEEeeccCCCcEEEEEeC
Confidence 22 4555566778899999999999999999999988886 4789999999999987 899999999999999999999
Q ss_pred ChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1054 DAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1054 ~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
+++.++++.+.|++. +..++|...++
T Consensus 282 ~~~~~~~~~~~l~~~--~~~~~~~~~~~ 307 (308)
T 2x7i_A 282 DLPTAKNIVKAVEKA--GAAHTWIENLG 307 (308)
T ss_dssp SHHHHHHHHHHHHHT--TCSEEEEEECB
T ss_pred ChhHHHHHHHHHHhC--CCceEeeEeCC
Confidence 767788999999876 34567777664
No 14
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A
Probab=100.00 E-value=6.7e-32 Score=305.19 Aligned_cols=308 Identities=20% Similarity=0.275 Sum_probs=223.7
Q ss_pred CCeEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCC
Q 001402 737 PRTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 737 ~~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
...++++|||||+|+|||+|+. |+.++++||+++.+ +++++.++..+.+...........++.+. .+.+
T Consensus 3 ~~~~~~~APgki~L~geh~~~~------G~~~l~~ai~~~~~----v~v~~~~~~~i~i~~~~~~~~~~~~~~~~-~~~~ 71 (317)
T 1kkh_A 3 GSHMIIETPSKVILFGEHAVVY------GYRAISMAIDLTST----IEIKETQEDEIILNLNDLNKSLGLNLNEI-KNIN 71 (317)
T ss_dssp TCCEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEE----EEEEECCSSEEEEEETTTTEEEEEETTTG-GGCC
T ss_pred CCCEEEEccEEEEEEcCCeeEc------CCEEEEEEecCeEE----EEEEECCCCeEEEEeCCCCCceEEEeccC-CccC
Confidence 4568899999999999999995 77799999999875 77777766667776543221111111111 1112
Q ss_pred CCChHHHHHHHHHHhhhhhhh-c-ccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 817 HNDPFRLVKSALLVTGVIHEK-L-IESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~-~-~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
..+| ++++.++..+....+. . ....|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+
T Consensus 72 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~i~i~~~iP~~~GLGsSsa~~~a~~~al~~l~~~~l~~~~l~~~a~~~E~ 150 (317)
T 1kkh_A 72 PNNF-GDFKYCLCAIKNTLDYLNIEPKTGFKINISSKIPISCGLGSSASITIGTIKAVSGFYNKELKDDEIAKLGYMVEK 150 (317)
T ss_dssp GGGS-GGGHHHHHHHHHHHHHTTCCCCSCEEEEEEECSCSSSSSCHHHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred cccc-hHHHHHHHHHHHHHHhhcccCCCCeEEEEecCCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 2234 4454444433210000 1 12469999999999999999999999999999999999999999999999999998
Q ss_pred h-cCCCCcccchhhhcccceEEEecCCCccceeEEEEccCC--hhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcC
Q 001402 895 L-MGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLAS--PQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRD 971 (1084)
Q Consensus 895 ~-~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~--~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~ 971 (1084)
. .|++|| +|++++++||+.++ .++ .+++++.+ +.+ ...+.+++++|+.+++|.++++.+... ...
T Consensus 151 ~~~g~~sg-~D~~~~~~Gg~~~~--~~~-----~~~~~~~~~~~~l--~~~~~~vl~~~~~~~~T~~~~~~~~~~-~~~- 218 (317)
T 1kkh_A 151 EIQGKASI-TDTSTITYKGILEI--KNN-----KFRKIKGEFEEFL--KNCKFLIVYAEKRKKKTAELVNEVAKI-ENK- 218 (317)
T ss_dssp HHSSSCCS-HHHHHHHHCSEEEE--SSS-----CEEEECHHHHHHH--HTCCEEEEEEECCCSCHHHHHHHHHTC-TTH-
T ss_pred HhcCCCch-HHHHHHHhCCeEEE--cCC-----CceEecCCccccc--ccCcEEEEEECCCcCcHHHHHHHHHHh-hcc-
Confidence 5 466666 79999999999876 222 13455432 111 012589999999999999887754221 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEE
Q 001402 972 NLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALL 1050 (1084)
Q Consensus 972 ~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~via 1050 (1084)
...+.++ ...+.+++..+|++.|+++|+++|..++.+ ++++|+++++++.+++ | +|++|||||+|||+++
T Consensus 219 ---~~~~~~~---~~~~~~a~~~~d~~~l~~~~~~~~~~~~~~--~~~~p~l~~~~~~~~~~G-~ga~~sGaG~GG~v~~ 289 (317)
T 1kkh_A 219 ---DEIFKEI---DKVIDEALKIKNKEDFGKLMTKNHELLKKL--NISTPKLDRIVDIGNRFG-FGAKLTGAGGGGCVII 289 (317)
T ss_dssp ---HHHHHHH---HHHHHHHHHCCSHHHHHHHHHHHHHHHHTT--TCCCHHHHHHHHHHHHHS-SEEEECSSSSSEEEEE
T ss_pred ---HHHHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHhcC-ceeEEeecCCCCEEEE
Confidence 1112222 233567888899999999999998888876 4889999999999987 8 9999999999999999
Q ss_pred EEcChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1051 LAKDAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1051 L~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
|+++. .++++.+.|++. ..++|.++++
T Consensus 290 l~~~~-~~~~~~~~l~~~---g~~~~~~~~~ 316 (317)
T 1kkh_A 290 LVNEE-KEKELLKELNKE---DVRIFNCRMM 316 (317)
T ss_dssp ECCGG-GHHHHHHHHHTS---SCEEEEECBC
T ss_pred Eechh-hHHHHHHHHHhc---CCEEEEEEec
Confidence 99864 488999999874 3567777765
No 15
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae}
Probab=100.00 E-value=1.3e-30 Score=290.76 Aligned_cols=275 Identities=20% Similarity=0.195 Sum_probs=209.1
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEee-ecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAI-SLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDH 817 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI-~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~ 817 (1084)
.++++|||||+|+|+|+|++ |+.++++|| +++.+ +++++.+ ..+.+.. .
T Consensus 5 ~~~~~aP~ki~L~Ge~~~~~------g~~~l~~ai~~~~~~----v~v~~~~-~~~~i~~----------------~--- 54 (292)
T 2oi2_A 5 VGVGQAHSKIILIGEHAVVY------GYPAISLPLLEVEVT----CKVVPAE-SPWRLYE----------------E--- 54 (292)
T ss_dssp CEEEEEEEEEEEECTTGGGG------TCCEEEEEEEEEEEE----EEEEECS-SCCCCCC----------------C---
T ss_pred cEEEEeeeEEEEEeCCeeec------CCcEEEEEEcCcEEE----EEEEECC-CceEEEe----------------c---
Confidence 37899999999999999984 889999999 98875 6666542 1111110 0
Q ss_pred CChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-hc
Q 001402 818 NDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ-LM 896 (1084)
Q Consensus 818 ~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~-~~ 896 (1084)
...+++..+...+ ......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|+ ..
T Consensus 55 -~~~~~~~~~~~~~-----~~~~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~~~~~~l~~~~l~~la~~~E~~~~ 128 (292)
T 2oi2_A 55 -DTLSMAVYASLEY-----LNITEACIRCEIDSAIPEKRGMGSSAAISIAAIRAVFDYYQADLPHDVLEILVNRAEMIAH 128 (292)
T ss_dssp -SHHHHHHHHHHHH-----HTCSCCCEEEEEC----CCGGGSCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTT
T ss_pred -CccchhhhhhHHH-----hcccCCceEEEEEecCCCCCCchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 1112222222211 1122468999999999999999999999999999999999999999999999999997 35
Q ss_pred CCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHH
Q 001402 897 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLIS 976 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~ 976 (1084)
+.++|+ |++++++||+.++. .+. .+++++++ +...+++++++.+++|+++++.+.+.. .. ..+
T Consensus 129 ~~p~g~-d~~~~~~gg~~~~~--~~~----~~~~~~~~------~~~~~~i~~~~~~~sT~~~~~~l~~~~-~~---~~~ 191 (292)
T 2oi2_A 129 MNPSGL-DAKTCLSDQPIRFI--KNV----GFTELEMD------LSAYLVIADTGVYGHTREAIQVVQNKG-KD---ALP 191 (292)
T ss_dssp CCCCSH-HHHHHTCSSCEEEE--TTT----EEEECCCC------CSCEEEEEECSSCCCHHHHHHHHHHTG-GG---GHH
T ss_pred CCCCch-hHHHHhcCceEEEE--cCC----CceeecCC------CCCEEEEEECCCCCcHHHHHHHHHHHH-hh---hHH
Confidence 789997 99999999998773 232 24565432 123488999999999988766543221 11 023
Q ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcCh
Q 001402 977 SIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 977 ~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~ 1055 (1084)
.++.+.+++.++.++|.++|++.|+++|+++|..++.+ ++++|+++++++.+++ |++|+++||||+|||+++|++++
T Consensus 192 ~~~~~~~~~~~~~~al~~~d~~~l~~~~~~~~~~l~~~--~~~~p~l~~l~~~~~~~Ga~ga~~sGaG~Gg~v~~l~~~~ 269 (292)
T 2oi2_A 192 FLHALGELTQQAEIAISQKDAEGLGQILSQAHLHLKEI--GVSSLEADSLVETALSHGALGAKMSGGGLGGCIIALVTNL 269 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TCCCHHHHHHHHHHHTTTCSEEEEESSSSSSEEEEEESCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHhCCCceeeeccCCCCcEEEEEecCc
Confidence 45666666778899999999999999999999877775 4789999999999987 88999999999999999999976
Q ss_pred hhHHHHHHHHHhc
Q 001402 1056 ESATELRRMLEKD 1068 (1084)
Q Consensus 1056 ~~ae~i~~~L~~~ 1068 (1084)
+.++++.+.|++.
T Consensus 270 ~~~~~~~~~l~~~ 282 (292)
T 2oi2_A 270 THAQELAERLEEK 282 (292)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhc
Confidence 7788999999876
No 16
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A*
Probab=99.95 E-value=3.8e-26 Score=255.46 Aligned_cols=277 Identities=15% Similarity=0.141 Sum_probs=201.9
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHN 818 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~ 818 (1084)
.+++++|+|++++|+++|. +++|++.|.. .+.+++.++..+.+..+. .++ |. +
T Consensus 2 ~i~v~aPaki~nlG~g~~v-----------l~~a~d~~~~---~~~~~~~~~~~~~i~~~~---------~~~--~~--~ 54 (296)
T 1h72_C 2 KVRVKAPCTSANLGVGFDV-----------FGLCLKEPYD---VIEVEAIDDKEIIIEVDD---------KNI--PT--D 54 (296)
T ss_dssp EEEEEEEEEEECTGGGTTT-----------EEEEEEEEEE---EEEEEEESSSSEEEEESC---------TTS--CC--C
T ss_pred eEEEEEEeehhccccchhh-----------hHHhcccccE---EEEEEecCCCeEEEEEcC---------CcC--CC--C
Confidence 4789999999999998886 8999998654 245555554445554321 112 21 1
Q ss_pred ChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh-cC
Q 001402 819 DPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQL-MG 897 (1084)
Q Consensus 819 ~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~-~g 897 (1084)
.|.+++..++..+. +......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|.. .|
T Consensus 55 ~~~n~v~~a~~~~~---~~~g~~~g~~i~i~~~iP~g~GLGSSsa~~~a~~~al~~l~~~~l~~~~l~~la~~~e~~~~g 131 (296)
T 1h72_C 55 PDKNVAGIVAKKMI---DDFNIGKGVKITIKKGVKAGSGLGSSAASSAGTAYAINELFKLNLDKLKLVDYASYGELASSG 131 (296)
T ss_dssp TTTSHHHHHHHHHH---HHTTCCCEEEEEEECSSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred CccCcHHHHHHHHH---HHhCCCCCeEEEEEcCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCcccC
Confidence 14557776665542 112223689999999999999999999999999999999999999999999999999984 45
Q ss_pred CCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHH
Q 001402 898 TGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISS 977 (1084)
Q Consensus 898 t~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~ 977 (1084)
+++ .+|.+++++||+.+.... + + ..+.++++++ +++++|++|+...+|+++.+.+. ...+ ....
T Consensus 132 ~~~-~ddv~~~~~gg~~~~~~~-~-~--~~~~~~~~~~------~~~~vl~~p~~~~~T~~~~~~l~----~~~~-~~~~ 195 (296)
T 1h72_C 132 AKH-ADNVAPAIFGGFTMVTNY-E-P--LEVLHIPIDF------KLDILIAIPNISINTKEAREILP----KAVG-LKDL 195 (296)
T ss_dssp SCC-CTTHHHHHHCSEEEEEET-T-T--TEEEEECCCS------CCCEEEECCSSCCCHHHHHHTSC----SCCC-HHHH
T ss_pred CCC-ccchHHHHhCCEEEEEeC-C-c--eEEEEEcCCC------CeEEEEEeCCCCccHHHHHHhcc----CcCc-HHHH
Confidence 555 467777999999888532 2 2 2356776553 46899999998888887654321 0000 1122
Q ss_pred HHHHHHHHHHHHHHHhhcCHHHHHHHH--HHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCccceeEEEEcCh
Q 001402 978 IKRLTELAKNGRDALMNCDVDELGKIM--LEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFALLLAKDA 1055 (1084)
Q Consensus 978 l~~l~~~a~~~~~AL~~gD~~~lg~lm--~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~viaL~~~~ 1055 (1084)
+.++.. +.++.+||.++|++.|+++| ++.|+..+. .++|+++++++.+++.++|++|||||+ |+++|+ ++
T Consensus 196 ~~~~~~-~~~~~~al~~~d~~~~~~~~~~n~~h~~~~~----~~~p~l~~~~~~~~~~a~ga~~sGsG~--~v~~l~-~~ 267 (296)
T 1h72_C 196 VNNVGK-ACGMVYALYNKDKSLFGRYMMSDKVIEPVRG----KLIPNYFKIKEEVKDKVYGITISGSGP--SIIAFP-KE 267 (296)
T ss_dssp HHHHHH-HHHHHHHHHTTCHHHHHHHHTTCCSSHHHHH----TTSTTHHHHHHHHTTTEEEEEECTTSS--CEEEEE-CG
T ss_pred HHHHHH-HHHHHHHHHcCCHHHHHHHHhcCcchhhhhh----ccCccHHHHHHHHHhhcceEEEecCCh--heEEEe-cH
Confidence 333322 34688999999999999999 444343332 467999999999986678999999999 999999 45
Q ss_pred hhHHHHHHHHHhcC
Q 001402 1056 ESATELRRMLEKDS 1069 (1084)
Q Consensus 1056 ~~ae~i~~~L~~~~ 1069 (1084)
+.++++.+.|++.+
T Consensus 268 ~~~~~~~~~l~~~~ 281 (296)
T 1h72_C 268 EFIDEVENILRDYY 281 (296)
T ss_dssp GGHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhc
Confidence 78889999998753
No 17
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes}
Probab=99.93 E-value=4.6e-24 Score=239.09 Aligned_cols=279 Identities=15% Similarity=0.154 Sum_probs=197.7
Q ss_pred EEEEeceEEeeeccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCCCCCCC
Q 001402 740 VKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATPFDHND 819 (1084)
Q Consensus 740 v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p~~~~~ 819 (1084)
+++++|++..++|.++|. |.+||+++.+ +++++. +..+.+...... .+ |.+..+
T Consensus 3 ~~v~vPat~anlG~Gfd~-----------lg~al~l~d~----v~~~~~-~~~~~i~~~~~~--------~~--p~~~~n 56 (298)
T 3hul_A 3 LRIRVPATTANLGPGFDS-----------CGLALTLYLT----LDIGAE-ADSWYIEHNIGG--------GI--PHDETN 56 (298)
T ss_dssp EEEEEEEEEESCTTCTTT-----------EEEEEEEEEE----EEEEEE-CSSCEEECCCCT--------TC--CSSTTS
T ss_pred EEEEEeeceeccCCCcch-----------hhhhcccceE----EEEEEc-CCceEEEecCcc--------cC--CCCCCc
Confidence 789999999999999998 8999999975 666542 233444432111 12 222223
Q ss_pred hHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCC
Q 001402 820 PFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTG 899 (1084)
Q Consensus 820 ~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~ 899 (1084)
. ++|++...+. ...|++|++.++||.++|||||||+++|++.|++++++.++++++|+++|..+|.+
T Consensus 57 l--v~~a~~~~~~-------~~~g~~i~i~~~iP~~~GLGsssa~~~a~~~al~~~~~~~l~~~el~~la~~~eg~---- 123 (298)
T 3hul_A 57 V--IIETALNLAP-------NLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLAELNLSKEEKVRIAAEIEGH---- 123 (298)
T ss_dssp H--HHHHHHHHCT-------TCCCEEEEEEECSCTTSSSSHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHSC----
T ss_pred H--HHHHHHHHhc-------cCCceEEEEecCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcCC----
Confidence 2 5666655432 24699999999999999999999999999999999999999999999999999932
Q ss_pred CcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHHHHHHH
Q 001402 900 GGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLLISSIK 979 (1084)
Q Consensus 900 ~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~~~~l~ 979 (1084)
.+|++++++||+.+.... +.. +.+.++++| ++++++++++...+|+++.+...+ .. ...+.+.
T Consensus 124 --~ddv~~~~~GG~~~~~g~-ge~--~~~~~~~~p-------~~~~vlv~p~~~~sT~~a~~~l~~----~~-~~~~~~~ 186 (298)
T 3hul_A 124 --PDNVAPAVLGNWVVGAKL-DGE--DFYVRHLFP-------DCALIAFIPKAELLTSESRGVLPD----TL-PFKEAVQ 186 (298)
T ss_dssp --STTHHHHHHCSEEEEEEE-TTE--EEEEEECCC--------CEEEEEECCCCCC--------CC----EE-EHHHHHH
T ss_pred --cccCcccccCCEEEEEeC-CCc--EEEEEcCCC-------CeEEEEEECCCCCCcHHHHHHHhh----hc-cHHHHHH
Confidence 268888999999886543 332 344566644 368999999888888776543210 00 0011222
Q ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHH--HHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEcChh
Q 001402 980 RLTELAKNGRDALMNCDVDELGKIMLEA--WRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAKDAE 1056 (1084)
Q Consensus 980 ~l~~~a~~~~~AL~~gD~~~lg~lm~~s--~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~~~~ 1056 (1084)
++. .+..+..||.++|++.++++|++. |+..+. ...|+++++++.+++ |++|++|||||+ |+|+|++ ++
T Consensus 187 ~~~-~~~~~~~al~~~d~~~l~~~l~nd~~~e~~~~----~~~p~l~~l~~~~~~~Ga~ga~~SGsGp--tv~al~~-~~ 258 (298)
T 3hul_A 187 ASS-IANVMIAAILRNDMTLAGEMMERDLWHEKYRS----QLVPHLAQIRDVAKNQGAYAACLSGAGP--TVLVFAP-RN 258 (298)
T ss_dssp HHH-HHHHHHHHHTTTCHHHHHHHHTCCCC-----C----TTGGGHHHHHHHHHTTTCCEEEECTTSS--CEEEEEC-GG
T ss_pred HHH-HHHHHHHHHHcCCHHHHHHHHhhhHHHHHHHH----hhCchHHHHHHHHHHCCCEEEEEeccch--heEEEEC-HH
Confidence 332 245788999999999999999732 332221 236999999999987 899999999997 8999998 57
Q ss_pred hHHHHHHHHHhcCCCCcEEEEeecCCC
Q 001402 1057 SATELRRMLEKDSNFNSEVYNWNIYLE 1083 (1084)
Q Consensus 1057 ~ae~i~~~L~~~~~f~v~v~~~~i~~~ 1083 (1084)
.++++.+.|++.+ ...+++.++++.+
T Consensus 259 ~a~~v~~~l~~~~-~~~~~~~~~~~~~ 284 (298)
T 3hul_A 259 LANKLQTSLQTLE-IDADVLLLDVEGS 284 (298)
T ss_dssp GHHHHHHHHHTTC-CSSEEEEEEBCCC
T ss_pred HHHHHHHHHHhcC-CCcEEEEcccCCC
Confidence 8999999998763 4567888877654
No 18
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A*
Probab=99.93 E-value=3.7e-24 Score=240.69 Aligned_cols=284 Identities=17% Similarity=0.155 Sum_probs=204.7
Q ss_pred eEEEEeceEEee----eccccccCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCC
Q 001402 739 TVKVELPVRIDF----AGGWSDTPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 739 ~v~v~aP~Ri~L----~Ge~tD~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
.+.++||+|||| .|-+.|- | |.-..+.++|+++.. +++++.++..|.+...... ++ |
T Consensus 5 ~~~~~apAKiNL~L~v~~~r~DG--y---h~l~s~~~al~l~D~----l~~~~~~~~~i~~~g~~~~--------~~--p 65 (306)
T 3pyf_A 5 SVTVRVPGKVNLYLAVGDRREDG--Y---HELTTVFHAVSLVDE----VTVRNADVLSLELVGEGAD--------QL--P 65 (306)
T ss_dssp CEEEEEEEEEEEEEEECCCCTTS--C---CCEEEEEEEEEEEEE----EEEEECSSCEEEEESTTGG--------GS--C
T ss_pred cEEEEecceEEeecccCCcCCCC--C---cchheeEEEcccCCE----EEEEECCCCEEEEeCCCcc--------CC--C
Confidence 488999999999 6766662 1 355568899999986 6677665555554432111 12 2
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
.+++ |++..|+..+. +......|++|++.++||.|+|||||||+++|++.|++++++.++++++|++++..+|
T Consensus 66 ~~~~---Nlv~~A~~~l~---~~~g~~~~~~i~i~~~iP~~~GLGsssa~a~a~l~al~~~~~~~l~~~~l~~la~~~~- 138 (306)
T 3pyf_A 66 TDER---NLAWQAAELMA---EHVGRAPDVSIMIDKSIPVAGGMAGGSADAAAVLVAMNSLWELNVPRRDLRMLAARLG- 138 (306)
T ss_dssp CSTT---SHHHHHHHHHH---HHTTCCCCEEEEEEECSCTTSSSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHC-
T ss_pred CCCc---cHHHHHHHHHH---HHhCCCCCeEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC-
Confidence 2222 24444443331 1222346999999999999999999999999999999999999999999999999987
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
.|++++++||+.+.... |. .+.|++.++ +++++|++|+...+|.++.+..........
T Consensus 139 --------~Dv~~~~~Gg~~~~~g~-ge----~~~~l~~~~------~~~~vl~~P~~~vsT~~a~~~l~~~~~~~~--- 196 (306)
T 3pyf_A 139 --------SDVPFALHGGTALGTGR-GE----ELATVLSRN------TFHWVLAFADSGLLTSAVYNELDRLREVGD--- 196 (306)
T ss_dssp --------TTHHHHHHBSEEEECSS-SS----CCEEECCSS------CEEEEEEECSSCCCHHHHHHHHHHHHHHSC---
T ss_pred --------CCCceeecCceEEEEee-CC----eEEEccCCC------CcEEEEEECCCCCcHHHHHHhhhhhccccc---
Confidence 39999999999887643 32 245665543 468999999999999988765432211000
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH-HhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEE
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRL-HQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLA 1052 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~-~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~ 1052 (1084)
+... ..+..+..+|.++|++.++++|.+.++. ... ..|+++++++.+.+ |++|++|||||+ |+|+|+
T Consensus 197 ---~~~~-~~~~~~~~al~~~d~~~l~~~l~n~le~~~~~-----~~P~l~~i~~~~~~~Ga~ga~mSGsGp--tvfal~ 265 (306)
T 3pyf_A 197 ---PPRL-GEPGPVLAALAAGDPDQLAPLLGNEMQAAAVS-----LDPALARALRAGVEAGALAGIVSGSGP--TCAFLC 265 (306)
T ss_dssp ---CCCC-CCHHHHHHHHHHTCHHHHGGGCEETTHHHHHH-----HCTHHHHHHHHHHHTTCSEEEECTTSS--EEEEEE
T ss_pred ---cccc-cCHHHHHHHHHhCCHHHHHHHhccchHHHHHH-----hChHHHHHHHHHHhcCCCEEEEcCcch--hheEEe
Confidence 0000 0234678899999999999988544332 222 25899999999887 899999999996 999999
Q ss_pred cChhhHHHHHHHHHhcCCCCcEEEEeecCC
Q 001402 1053 KDAESATELRRMLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1053 ~~~~~ae~i~~~L~~~~~f~v~v~~~~i~~ 1082 (1084)
++++.++++.+.|++. +...+++.++++.
T Consensus 266 ~~~~~a~~~~~~l~~~-g~~~~v~~~~~~~ 294 (306)
T 3pyf_A 266 TSASSAIDVGAQLSGA-GVCRTVRVATGPV 294 (306)
T ss_dssp SSHHHHHHHHHHHHHT-TSSSEEEEEEECC
T ss_pred CCHHHHHHHHHHHHhc-CCcceEEEeecCC
Confidence 9877899999999875 3466777776654
No 19
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A
Probab=99.90 E-value=6e-22 Score=225.09 Aligned_cols=298 Identities=13% Similarity=0.087 Sum_probs=194.7
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeeec-CcccceeEEEEEcCCC-cEEEEeCCCCceeeecCCCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAISL-ESSLPIGTIIETTKMS-GVLISDDAGNQLHIEDLTPIATPFD 816 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~l-~~~~pi~v~v~~~~~~-~i~i~s~~~~~~~~~~l~~l~~p~~ 816 (1084)
.++++||+||+|+|.|.|+..-...-+-..+++|++. ++. ++++..++. ...+. ++.-..|
T Consensus 9 ~~~~~ap~nialiky~gk~~~~~~lP~~dslglal~~~~~~----~~v~~~~~~~~~~~~-----------i~g~~~~-- 71 (332)
T 3qt5_A 9 SGKARAHTNIALIKYWGKADETYIIPMNNSLSVTLDRFYTE----TKVTFDPDFTEDCLI-----------LNGNEVN-- 71 (332)
T ss_dssp EEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEE----EEEEEETTCSSCEEE-----------ETTEECC--
T ss_pred EEEEEecCcEEEEeeeeeccCCccccCCCceEEEecCCCCe----eEEEEcCCCCccEEE-----------ECCccCC--
Confidence 4789999999999999999731111123356777762 433 334332210 01111 1110011
Q ss_pred CCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhc
Q 001402 817 HNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLM 896 (1084)
Q Consensus 817 ~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~ 896 (1084)
.++.+++..++..+. +......|++|++.++||.++|||||||.++|++.|+++++++++++++|+++|..+|
T Consensus 72 -~~~~n~v~~~~~~~~---~~~~~~~~~~i~~~~~iP~~~GLgSSaa~~~a~~~a~~~l~~~~l~~~el~~la~~~~--- 144 (332)
T 3qt5_A 72 -AKEKEKIQNYMNIVR---DLAGNRLHARIESENYVPTAAGLASSASAYAALAAACNEALSLNLSDTDLSRLARRGS--- 144 (332)
T ss_dssp -HHHHHHHHHHHHHHH---HHHTCCCEEEEEEEEESCGGGTCCCHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHC---
T ss_pred -cchHHHHHHHHHHHH---HhcCCCCCEEEEEecCCCCCCCcchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhc---
Confidence 235667777665542 1222346899999999999999999999999999999999999999999999999875
Q ss_pred CCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCC---cchHHHHHHHHHHHHhhcChH
Q 001402 897 GTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ---VRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 897 gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~---tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
| |.+++++||+..+....+.. .....+++..+. ..+++++++.+.. +.++++.+++.++. +..
T Consensus 145 ----g--~~~~~~~GG~~~~~~g~~~~-~~~~~~l~~~~~---~~~l~~vv~vp~~~~~~~ss~~~~~~~~~~----s~~ 210 (332)
T 3qt5_A 145 ----G--SASRSIFGGFAEWEKGHDDL-TSYAHGINSNGW---EKDLSMIFVVINNQSKKVSSRSGMSLTRDT----SRF 210 (332)
T ss_dssp ----G--GGGGGGSCSEEEEECCSSTT-TCEEEEECCTTG---GGGEEEEEECCCCCCCC--CHHHHHHHHHH----CTT
T ss_pred ----C--CchhhhcCCeEEEecCCCCc-cceeeecccccC---CCCcEEEEEEEcCCCCCCchHHHHHHhhhc----Chh
Confidence 2 77889999998865322211 112345541100 1245666655443 45567777765322 112
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-HHHhhc---CCC--CCcHHHHHHHHHHc----CCCCeEEEcCCC
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEAW-RLHQEL---DPH--CSNEFVDRLFAFAD----PYCCGYKLVGAG 1043 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~-~~~~~l---~~~--vs~p~ld~li~~a~----~ga~GaklSGAG 1043 (1084)
..+.+.++.+.+..+..||.++|++.|+++|++++ ..++.+ .+. ...|+++++++.++ .|++|+.+||||
T Consensus 211 ~~~~v~~~~~~~~~l~~Al~~~D~~~l~~~~~~d~~~lh~~~~~~~p~~~yl~p~~~~i~~~~~~~~~~Ga~~a~~SGaG 290 (332)
T 3qt5_A 211 YQYWLDHVDEDLNEAKEAVKNQDFQRLGEVIEANGLRMHATNLGAQPPFTYLVQESYDAMAIVEQCRKANLPCYFTMDAG 290 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcccCCCceeeChHHHHHHHHHHHHHhCCCcEEEEeCCC
Confidence 22344455556778999999999999999998442 222221 111 14689999888884 489999999998
Q ss_pred ccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEe
Q 001402 1044 GGGFALLLAKDAESATELRRMLEKDSNFNSEVYNW 1078 (1084)
Q Consensus 1044 gGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~ 1078 (1084)
+ ++++|+++ ++++++.+.|++.+. ..+++.+
T Consensus 291 P--tv~~l~~~-~~a~~v~~~l~~~~~-~~~~~v~ 321 (332)
T 3qt5_A 291 P--NVKVLVEK-KNKQAVMEQFLKVFD-ESKIIAS 321 (332)
T ss_dssp S--CEEEEEEH-HHHHHHHHHHHTTSC-GGGEEEE
T ss_pred C--cEEEEECH-HHHHHHHHHHHHhCC-CceEEEe
Confidence 8 99999985 688999999987632 3456555
No 20
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas}
Probab=99.90 E-value=1.6e-21 Score=220.31 Aligned_cols=292 Identities=11% Similarity=0.078 Sum_probs=194.4
Q ss_pred CeEEEEeceEEeeeccccccCCcccCCCceEEEEee-ecCcccceeEEEEE-cCC-CcEEEEeCCCCceeeecCCCCCCC
Q 001402 738 RTVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAI-SLESSLPIGTIIET-TKM-SGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 738 ~~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI-~l~~~~pi~v~v~~-~~~-~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
..++++||+||+|+|+|+|++.-...++--.+.+++ +++.. ++++. .++ ..+.+..+ .. +
T Consensus 7 ~~~~~~ap~~i~l~~~~g~~~~g~~lp~~dslg~al~~l~~~----~~v~~~~~~~~~~~~~~~-----------g~--~ 69 (317)
T 2gs8_A 7 NVITVTSYANIAIIKYWGKENQAKMIPSTSSISLTLENMFTT----TSVSFLPDTATSDQFYIN-----------GI--L 69 (317)
T ss_dssp CEEEEEEEEEEEEECCCCEEETTTTEESSCEEEEEEEEEEEE----EEEEECCTTCCSCEEEET-----------TE--E
T ss_pred CcEEEEecCcEEEEeeeeeccCCcccCCCCceEEEeecccce----EEEEEEcCCCCeEEEEEC-----------CC--c
Confidence 358899999999999999997322112323577777 36554 45554 221 11222111 10 0
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
...+|.++++.++..+. +.. . .|++|++.++||.++|||||||+++|++.|+++++|+++++++|++++..+|.
T Consensus 70 -~~~~~~n~v~~~~~~~~---~~~-~-~g~~I~i~~~IP~~~GLGSSaA~~vA~~~al~~l~g~~ls~~el~~la~~~~G 143 (317)
T 2gs8_A 70 -QNDEEHTKISAIIDQFR---QPG-Q-AFVKMETQNNMPTAAGLSSSSSGLSALVKACDQLFDTQLDQKALAQKAKFASG 143 (317)
T ss_dssp -CCHHHHHHHHHHHTTTC---CTT-C-CCEEEEEECCSCGGGCCCHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHG
T ss_pred -cccchHHHHHHHHHHHH---Hhc-C-CCeEEEEeCCCCCCCchHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhcc
Confidence 01146778888776543 112 2 78999999999999999999999999999999999999999999999987652
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCC-cchHHHHHHHHHHHHhhcChH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQ-VRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~-tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
+++++++||+..+.. ++. .....|+ +.+ +...+++++++. ...+.+..+..... +..
T Consensus 144 ---------~~~~~~~GG~~~~~~-~~~--~~~~~~~--~~~----~~~~v~i~~~~~~~~~tt~~~~~~~~~----~~~ 201 (317)
T 2gs8_A 144 ---------SSSRSFFGPVAAWDK-DSG--AIYKVET--DLK----MAMIMLVLNAAKKPISSREGMKLCRDT----STT 201 (317)
T ss_dssp ---------GGGGGGSCSEEEECT-TTC--CEEECCC--CCC----EEEEEEECCCSSCCSCHHHHHHHHHHH----CTT
T ss_pred ---------hhHhhhcCChheEee-CCC--ceeEEEc--ccc----ccEEEEEEECCCcCcccHHHHHHHhhc----CHH
Confidence 567899999988764 332 1223344 221 222344446644 33566655543221 111
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcC----CC--CCcHHHHHHHHHH---c-CCCCeEEEcCCC
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELD----PH--CSNEFVDRLFAFA---D-PYCCGYKLVGAG 1043 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~----~~--vs~p~ld~li~~a---~-~ga~GaklSGAG 1043 (1084)
..+...+....+..+..||.++|++.||++|+++|..++.++ +. ...|.+.++++.+ + .|+.++.+||||
T Consensus 202 ~~~~~~~~~~~~~~~~~al~~~d~~~lg~~~~~~~~~l~~~~~~~~p~~~~l~~~~~~i~~~~~~~~~~G~~~~~~SGaG 281 (317)
T 2gs8_A 202 FDQWVEQSAIDYQHMLTYLKTNNFEKVGQLTEANALAMHATTKTANPPFSYLTKESYQAMEAVKELRQEGFACYFTMDAG 281 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSSSCCCSCCHHHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCCceeEhHHHHHHHHHHHHHHhcCCcEEEEecCC
Confidence 112223345567789999999999999999998766555422 11 2346666666543 3 388899999998
Q ss_pred ccceeEEEEcChhhHHHHHHHHHhcCCCCcEEEEeecC
Q 001402 1044 GGGFALLLAKDAESATELRRMLEKDSNFNSEVYNWNIY 1081 (1084)
Q Consensus 1044 gGG~viaL~~~~~~ae~i~~~L~~~~~f~v~v~~~~i~ 1081 (1084)
+ ++++|+++ +.++++.+.+++ ..++|.+++.
T Consensus 282 p--tv~~l~~~-~~~~~v~~~l~~----~~~~~~~~~~ 312 (317)
T 2gs8_A 282 P--NVKVLCLE-KDLAQLAERLGK----NYRIIVSKTK 312 (317)
T ss_dssp S--CEEEEEEG-GGHHHHHHHHHT----TSEEEEEEBC
T ss_pred C--eEEEEEcH-HHHHHHHHHHhc----CCeEEEEecC
Confidence 8 99999986 467889999987 5788888765
No 21
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A*
Probab=99.89 E-value=8.1e-23 Score=226.00 Aligned_cols=250 Identities=14% Similarity=0.090 Sum_probs=182.7
Q ss_pred eEEEEeceEEee----eccccc-cCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCC
Q 001402 739 TVKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIAT 813 (1084)
Q Consensus 739 ~v~v~aP~Ri~L----~Ge~tD-~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~ 813 (1084)
.+.++||||||| .|.|.| | |++.++++||+++.+ + +++ +..+.+.. ..+
T Consensus 4 m~~~~aPakinl~l~v~g~r~dgy------h~~~sl~~ai~l~~~----v-~~~--~~~i~i~~-----------~~~-- 57 (271)
T 2v8p_A 4 MIKVLSPAKINLGLWVLGRLPSGY------HEILTLYQEIPFYDE----I-YIR--EGVLRVET-----------NIG-- 57 (271)
T ss_dssp CEEEEEEEEEEEEEEEEEECTTSC------EEEEEEEEEEEEEEE----E-EEE--ESSCEEEE-----------SSC--
T ss_pred eEEEeecceEEeeEeecccCCCCC------ceEEEEEEEcCcccE----E-EEe--CCeEEEEe-----------CCC--
Confidence 377899999999 788888 4 377899999999876 5 655 23344443 112
Q ss_pred CCCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Q 001402 814 PFDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLE 893 (1084)
Q Consensus 814 p~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E 893 (1084)
|. ++.+++..++..+. +......|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++|..+|
T Consensus 58 ~~---~~~nlv~~a~~~~~---~~~g~~~g~~i~i~~~IP~g~GLGsSsa~a~a~l~al~~l~~~~l~~~el~~la~~~e 131 (271)
T 2v8p_A 58 IP---QEENLVYKGLREFE---RITGIEINYSIFIQKNIPPGAGLGGGSSNLAVVLKKVNELLGSPLSEEELRELVGSIS 131 (271)
T ss_dssp CC---TTTCHHHHHHHHHH---HHHCCCCCEEEEEECCSCTTSSSCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHC
T ss_pred CC---CCchHHHHHHHHHH---HHhCCCCCeEEEEEeCCCCCCCCchHHHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhC
Confidence 11 23446655555432 1122246899999999999999999999999999999999999999999999999997
Q ss_pred HhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChH
Q 001402 894 QLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNL 973 (1084)
Q Consensus 894 ~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~ 973 (1084)
. |++++++||+.+.... +. .+++++++ .++++++++|+...+|.++.+.+.. ...
T Consensus 132 ~---------dv~~~~~gg~~~~~g~-g~----~~~~l~~~------~~~~~vl~~p~~~~sT~~~~~~~~~----~~~- 186 (271)
T 2v8p_A 132 A---------DAPFFLLGKSAIGRGK-GE----VLEPVETE------ISGKITLVIPQVSSSTGRVYSSLRE----EHF- 186 (271)
T ss_dssp T---------TTGGGGTCSEEEEETT-TT----EEEECCCC------CCSEEEEEECSSCCCHHHHHHTCCT----TSC-
T ss_pred C---------CHHHHhcCCeEEEEEc-CC----EEEEccCC------CCcEEEEEeCCCCCCHHHHHHhccc----ccC-
Confidence 3 8999999999987643 32 35666533 1468999999998888887653211 100
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEE-EcCCCccceeEEE
Q 001402 974 LISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYK-LVGAGGGGFALLL 1051 (1084)
Q Consensus 974 ~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~Gak-lSGAGgGG~viaL 1051 (1084)
.+ +..+ .+|.++|++.++++|++..+.... ..+|+++++++.+++ |+ ++ |||||+ |+++|
T Consensus 187 -----~~----~~~~-~al~~~d~~~~~~~~~n~l~~~~~----~~~p~l~~~~~~~~~~Ga--a~~mSGsG~--~v~~l 248 (271)
T 2v8p_A 187 -----VT----PEYA-EEKIQRIISGEVEEIENVLGDIAR----ELYPEINEVYRFVEYLGF--KPFVSGSGS--TVYFF 248 (271)
T ss_dssp -----CC----HHHH-HHHHHHHHTTCGGGCCBHHHHHHH----HHCHHHHHHHHHHHHTTC--CCEECTTSS--CEEES
T ss_pred -----cc----hhHH-HHhhcCCHHHHHHHHhCChhhHhH----HhChHHHHHHHHHHhCCC--ccCccccCc--CeEEE
Confidence 11 1234 788899999998887443332211 235999999999887 66 89 999985 99999
Q ss_pred EcChhhHHHHHH
Q 001402 1052 AKDAESATELRR 1063 (1084)
Q Consensus 1052 ~~~~~~ae~i~~ 1063 (1084)
+++++.++++.+
T Consensus 249 ~~~~~~a~~~~~ 260 (271)
T 2v8p_A 249 GGASEELKKAAK 260 (271)
T ss_dssp SCCCHHHHHHHH
T ss_pred eCCHHHHHHHHh
Confidence 988677777766
No 22
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A*
Probab=99.88 E-value=3e-22 Score=222.85 Aligned_cols=251 Identities=17% Similarity=0.187 Sum_probs=176.3
Q ss_pred EEEEeceEEee----eccccc-cCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCC
Q 001402 740 VKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 740 v~v~aP~Ri~L----~Ge~tD-~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
+.++||||||| .|+|+| | |++.++.+||+++.+ +++++.++..+.+.++. ..+ |
T Consensus 3 ~~~~apaKinL~L~v~g~~~dGy------h~l~sl~~ai~l~~~----v~v~~~~~~~i~i~~~~---------~~~--~ 61 (283)
T 2ww4_A 3 TQWPSPAKLNLFLYITGQRADGY------HTLQTLFQFLDYGDT----ISIELRDDGDIRLLTPV---------EGV--E 61 (283)
T ss_dssp EEEEEEEEEEEEEEEEEECTTSC------EEEEEEEEEEEEEEE----EEEEEESSSCEEECSCB---------TTB--C
T ss_pred ccccCceeEEeeeeccCCCCCCC------cceEEEEEECCCCcE----EEEEECCCCcEEEEeCC---------CCC--C
Confidence 45789999999 899999 5 378899999999986 67777665556654321 112 2
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhc------ccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKL------IESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARL 888 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~------~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~l 888 (1084)
. ..+++..++..+. +.. ....|++|++.++||.|+|||||||+++|++.|++++++.++++++|+++
T Consensus 62 ~----~~nlv~~a~~~~~---~~~~~~~~~g~~~g~~i~i~~~IP~g~GLGsSsa~~~a~l~al~~l~~~~l~~~~l~~l 134 (283)
T 2ww4_A 62 H----EDNLIVRAARLLM---KTAADSGRLPTGSGANISIDKRLPMGGGLGGGSSNAATVLVALNHLWQCGLSMDELAEM 134 (283)
T ss_dssp G----GGSHHHHHHHHHH---HHHHHTTCSCTTCEEEEEEECCCC-CTTSCHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred C----cccHHHHHHHHHH---HHhhhhcccCCCCceEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 1 1246666555432 111 12468999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHh
Q 001402 889 VLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYL 968 (1084)
Q Consensus 889 a~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~ 968 (1084)
|..+|. |++++++||+.+.... +. .+++++++ +..+++++|+...+|.++.+. .+ +
T Consensus 135 a~~~e~---------dv~~~~~gg~~~~~g~-g~----~~~~l~~~-------~~~~vl~~p~~~~sT~~~~~~-~~-~- 190 (283)
T 2ww4_A 135 GLTLGA---------DVPVFVRGHAAFAEGV-GE----ILTPVDPP-------EKWYLVAHPGVSIPTPVIFKD-PE-L- 190 (283)
T ss_dssp HHTTCT---------THHHHHHTBCEEEETT-TT----EEEECCCC-------CCEEEEECCSCCCCHHHHHTC-TT-S-
T ss_pred HHHhCC---------CHHHhhcCCeEEEEec-Cc----cceEcCCC-------CcEEEEEeCCCCCchHHHHhc-cc-c-
Confidence 988873 8999999999887654 32 24666543 468999999999999998765 22 1
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcCCCCeEEEcCCCcccee
Q 001402 969 QRDNLLISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADPYCCGYKLVGAGGGGFA 1048 (1084)
Q Consensus 969 ~~~~~~~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~ga~GaklSGAGgGG~v 1048 (1084)
... +. ...+ .+|.++++ +++.+..... ..|+++++++.+++.. |++|||||+ |+
T Consensus 191 ~~~-~~---~~~l--------~~l~~~~~------~nd~~~~~~~-----~~p~l~~i~~~~~~~G-~a~~SGsG~--tv 244 (283)
T 2ww4_A 191 PRN-TP---KRSI--------ETLLKCEF------SNDCEVIARK-----RFREVDAVLSWLLEYA-PSRLTGTGA--CV 244 (283)
T ss_dssp CCC-CC---CCCH--------HHHHTSCC------CBTTHHHHHH-----HCHHHHHHHHHHHTTS-CEEECTTSS--CE
T ss_pred ccc-ch---HHHH--------HHHHhhhh------cCchHHHHHh-----cChHHHHHHHHHHHcC-CceECCccc--ce
Confidence 111 00 0111 12333321 1111111222 2599999999988733 899999986 99
Q ss_pred EEEEcChhhHHHHHHHHHhc
Q 001402 1049 LLLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1049 iaL~~~~~~ae~i~~~L~~~ 1068 (1084)
++|+++++.++++.+.|.+.
T Consensus 245 f~l~~~~~~a~~~~~~l~~~ 264 (283)
T 2ww4_A 245 FAEFDTESEARQVLEQAPEW 264 (283)
T ss_dssp EEEESSHHHHHHHHHHCCC-
T ss_pred EEEeCCHHHHHHHHHHhhhh
Confidence 99999766688888888654
No 23
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5
Probab=99.87 E-value=4.3e-22 Score=220.62 Aligned_cols=260 Identities=18% Similarity=0.086 Sum_probs=181.6
Q ss_pred EEEEeceEEee----eccccc-cCCcccCCCceEEEEeeecCcccceeEEEEEcCCCcEEEEeCCCCceeeecCCCCCCC
Q 001402 740 VKVELPVRIDF----AGGWSD-TPPWSLERAGCVLNVAISLESSLPIGTIIETTKMSGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 740 v~v~aP~Ri~L----~Ge~tD-~~py~~~~GG~Vl~~AI~l~~~~pi~v~v~~~~~~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
+++ ||+||+| .|.+.| | |...+++++|+++.+ +++++ + .+.+..+. ++ |
T Consensus 2 i~~-aPakinl~l~v~g~r~dgy------h~~~sl~~ai~l~~~----v~~~~-~--~~~i~~~~----------~~--~ 55 (275)
T 1uek_A 2 ERL-APAKVNLGLSVRFRREDGY------HELHTLFAPFSLADR----LVVEP-V--SSGLHFQG----------PY--G 55 (275)
T ss_dssp EEE-EEEEEEEEEEEEEECTTSS------EEEEEEEEEEEEEEE----EEEEE-E--SSCEEEES----------TT--G
T ss_pred cee-ecCeEEEeeeecCcCCCCC------ceeeEEEEEcCCCCE----EEEEE-C--cEEEEEcC----------CC--C
Confidence 456 9999999 588777 4 477899999999876 66665 2 22232211 11 1
Q ss_pred CCCCChHHHHHHHHHHhhhhhhhcccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEKLIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQ 894 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~ 894 (1084)
..+++..++..+. +......|++|++.++||.|+|||||||+++|++.|++++++.++ +|+++|..+|.
T Consensus 56 -----~~n~v~~a~~~~~---~~~g~~~g~~i~i~~~IP~g~GLGSSsa~a~a~l~al~~l~~~~l---~l~~la~~~g~ 124 (275)
T 1uek_A 56 -----RENLAYRAASLYL---EAAGQPGGVRILLEKRIPEGAGLGGGSSDAAQVLLALQALYPAEV---DLFALARTLGA 124 (275)
T ss_dssp -----GGSHHHHHHHHHH---HHTTCCCEEEEEEECCSCSSSSSCHHHHHHHHHHHHHHHHSCSCC---CHHHHHHHHCT
T ss_pred -----CccHHHHHHHHHH---HHhCCCCCEEEEEecCCCCcCcccHHHHHHHHHHHHHHHHcCCCh---HHHHHHHHhCC
Confidence 1235655554432 112234689999999999999999999999999999999999988 89999988863
Q ss_pred hcCCCCcccchhhhcccceEEEecCCCccceeEEEEccCChhhhhccCcEEEEEEcCCcchHHHHHHHHHHHHhhcChHH
Q 001402 895 LMGTGGGWQDQIGGLYPGIKFTSSFPGIPLRLQVIPLLASPQLILELQQRLLVVFTGQVRLAHQVLQKVVTRYLQRDNLL 974 (1084)
Q Consensus 895 ~~gt~~G~~Dq~a~~~GG~~~~~~~~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~tr~T~~iL~~v~~~~~~~~~~~ 974 (1084)
|++++++||+.+.... +. .+++++ ++ ++++++++|+...+|.++++.+........+.
T Consensus 125 ---------dv~~~~~Gg~~~~~g~-g~----~~~~l~-~~------~~~~vl~~p~~~~sT~~~~~~~~~~~~~~~~~- 182 (275)
T 1uek_A 125 ---------DVPFFLLGRGAEARGV-GE----RLKPLA-LP------PVPAVVFFPGLRVPTPLVYRAVRPEDFGPDLP- 182 (275)
T ss_dssp ---------THHHHHHCSEEEEETT-TT----EEEEEC-CC------CEEEEEEECCCCCCHHHHHHTCCGGGCCCCCC-
T ss_pred ---------ChHHHhcCCeEEEEcc-Cc----eeEEcc-CC------CcEEEEEeCCCCCchHHHHHhCchhhcccCCC-
Confidence 8999999999987644 32 346665 32 56899999999999998766432110000000
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHcC-CCCeEEEcCCCccceeEEEEc
Q 001402 975 ISSIKRLTELAKNGRDALMNCDVDELGKIMLEAWRLHQELDPHCSNEFVDRLFAFADP-YCCGYKLVGAGGGGFALLLAK 1053 (1084)
Q Consensus 975 ~~~l~~l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l~~~vs~p~ld~li~~a~~-ga~GaklSGAGgGG~viaL~~ 1053 (1084)
+..+..+|.++ ++. +.|++.+..... ..|+++++++.+++ |++|++|||||+ |+++|++
T Consensus 183 ----------~~~~~~al~~~-~~~--~~~n~l~~~~~~-----~~p~l~~l~~~~~~~Ga~ga~~SGsG~--~v~~l~~ 242 (275)
T 1uek_A 183 ----------VEAILEALARG-EEP--PYWNSLEGPAFR-----LFPELKEVRGRMRALGLRGVLMSGSGS--AFFGLAE 242 (275)
T ss_dssp ----------HHHHHHHHHHT-CCC--SCCBTTHHHHHH-----HCTHHHHHHHHHHHTTCEEEEECTTSS--CEEEECS
T ss_pred ----------hHHHHHHHHhc-ccc--ccccchHHHHHH-----hChHHHHHHHHHHhCCCCEEEEecccc--CeEEEeC
Confidence 12355666665 332 233221111111 24899999999887 889999999996 9999998
Q ss_pred ChhhHHHHHHHHHhcCCCCcEEEEeecCC
Q 001402 1054 DAESATELRRMLEKDSNFNSEVYNWNIYL 1082 (1084)
Q Consensus 1054 ~~~~ae~i~~~L~~~~~f~v~v~~~~i~~ 1082 (1084)
+++.++++.+.|++. . ++|.++++.
T Consensus 243 ~~~~~~~~~~~l~~~---~-~~~~~~~~~ 267 (275)
T 1uek_A 243 GPDHARRAAEALRAW---G-RAWAGTLGG 267 (275)
T ss_dssp SHHHHHHHHHHHTTT---S-EEEEEEECC
T ss_pred CHHHHHHHHHHhhhc---c-EEEEEEecC
Confidence 866788899998863 4 788887764
No 24
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2
Probab=99.83 E-value=3.3e-18 Score=199.99 Aligned_cols=294 Identities=18% Similarity=0.135 Sum_probs=182.0
Q ss_pred eEEEEeceEEeeeccccccCCcccCCCceEEEEeee---cCcccceeEEEEEcCC-CcEEEEeCCCCceeeecCCCCCCC
Q 001402 739 TVKVELPVRIDFAGGWSDTPPWSLERAGCVLNVAIS---LESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTPIATP 814 (1084)
Q Consensus 739 ~v~v~aP~Ri~L~Ge~tD~~py~~~~GG~Vl~~AI~---l~~~~pi~v~v~~~~~-~~i~i~s~~~~~~~~~~l~~l~~p 814 (1084)
.++++||+||.|++.|.++..-....+--.+.+|++ ++.. ++|+..++ ..+.+. ++.-..+
T Consensus 25 ~~~~~Ap~nialik~~gkr~~~~~~P~~dslg~aL~~~~l~~~----~~v~~~~~~~~~~i~-----------i~G~~~~ 89 (416)
T 1fi4_A 25 TASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTL----TSAATAPEFERDTLW-----------LNGEPHS 89 (416)
T ss_dssp EEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEE----EEEEECTTCCSCBCT-----------TTCCBSS
T ss_pred EEEEEecceEEEEecccccCCceecccccceEEEEEcCCCcce----EEEEEcCCCCccEEE-----------ECCcccc
Confidence 478999999999999998863221123346889998 7765 55554322 111111 1110001
Q ss_pred CCCCChHHHHHHHHHHhhhhhhh---------cccccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHH
Q 001402 815 FDHNDPFRLVKSALLVTGVIHEK---------LIESMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENV 885 (1084)
Q Consensus 815 ~~~~~~~~lvkaal~~~g~~~~~---------~~~~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eL 885 (1084)
.. .++++.++..+...... .....|++|++.++||.++|||||||.++|++.|+++++|++++.++|
T Consensus 90 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~I~i~~~IP~~aGLGSSAA~aaA~l~Aln~l~gl~Ls~~eL 165 (416)
T 1fi4_A 90 ID----NERTQNCLRDLRQLRKEMESKDASLPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEI 165 (416)
T ss_dssp SS----SSSHHHHHHHHHHHHHHHHTTCTTSCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHH
T ss_pred cc----chHHHHHHHHHHHHhccccccccccccccCCcEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 11 12455555443210000 011578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCcccchhhhcccceEEEecCCC-ccceeEEEEccCChhhhhccCcEEEEEEcCC-cchHHHHHHHH
Q 001402 886 ARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG-IPLRLQVIPLLASPQLILELQQRLLVVFTGQ-VRLAHQVLQKV 963 (1084)
Q Consensus 886 a~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g-~~~~~~v~pl~~~~~~~~~l~~~lvlv~tg~-tr~T~~iL~~v 963 (1084)
+++|..++. |++++++||++.+....+ ........++...+.+ .++...+++++++. +..+...++..
T Consensus 166 a~lA~~g~G---------s~~~sl~GG~v~~~~G~~~~~~~~~~~~l~~~~~~-p~l~~vvlv~~~~~~~~sst~~~~~~ 235 (416)
T 1fi4_A 166 SRIARKGSG---------SACRSLFGGYVAWEMGKAEDGHDSMAVQIADSSDW-PQMKACVLVVSDIKKDVSSTQGMQLT 235 (416)
T ss_dssp HHHHHHHHG---------GGGGGGSSSEEEEECCSCTTCTTCEEEEEECGGGS-TTEEEEEEEECCCSCCCCHHHHHHHH
T ss_pred HHHHhccCC---------chheEeeCCcEEEecCCcCCCCCceeEEecCccCC-cccEEEEEEECCCCCCcCCHHHHHHH
Confidence 999987642 678899999988643210 0111223454432111 01222355555533 34565555543
Q ss_pred HHHHhhcChHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHhhc----CC--CCCcHHHHHHHHHHc---C-
Q 001402 964 VTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDVDELGKIMLEAWRLHQEL----DP--HCSNEFVDRLFAFAD---P- 1032 (1084)
Q Consensus 964 ~~~~~~~~~~~~~~l~~-l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~~l----~~--~vs~p~ld~li~~a~---~- 1032 (1084)
+.. .+.....+.+ ....+..+..||.++|++.|+++|++++..+..+ .+ ....|...++++.+. .
T Consensus 236 ~~~----~~~~~~~~~~i~~~~~~~l~~AL~~gD~~~~g~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~r~~ 311 (416)
T 1fi4_A 236 VAT----SELFKERIEHVVPKRFEVMRKAIVEKDFATFAKETMMDSNSFHATCLDSFPPIFYMNDTSKRIISWCHTINQF 311 (416)
T ss_dssp HHH----CSHHHHHHHTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred hhc----CHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCceeeecHHHHHHHHHHHHHHHh
Confidence 321 1111122332 3345678999999999999999997765543321 11 124567777776643 2
Q ss_pred -C-CCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhc
Q 001402 1033 -Y-CCGYKLVGAGGGGFALLLAKDAESATELRRMLEKD 1068 (1084)
Q Consensus 1033 -g-a~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~ 1068 (1084)
| +.++.+||||+ ++++|+++ +.++++.+.|++.
T Consensus 312 ~Ga~~~a~~SGaGP--tv~al~~~-~~~~~v~~~l~~~ 346 (416)
T 1fi4_A 312 YGETIVAYTFDAGP--NAVLYYLA-ENESKLFAFIYKL 346 (416)
T ss_dssp HTSCCEEEEECSSS--CEEEEEEG-GGHHHHHHHHHHH
T ss_pred cCCceEEEEecCCC--cEEEEECH-HHHHHHHHHHHHh
Confidence 6 67888999998 89999985 4567777777654
No 25
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Probab=99.74 E-value=4e-16 Score=180.53 Aligned_cols=285 Identities=18% Similarity=0.149 Sum_probs=172.9
Q ss_pred EEEEeceEEeee--ccccc--cCCcccC-CCceEEEEeee---cCcccceeEEEEEcCC-CcEEEEeCCCCceeeecCCC
Q 001402 740 VKVELPVRIDFA--GGWSD--TPPWSLE-RAGCVLNVAIS---LESSLPIGTIIETTKM-SGVLISDDAGNQLHIEDLTP 810 (1084)
Q Consensus 740 v~v~aP~Ri~L~--Ge~tD--~~py~~~-~GG~Vl~~AI~---l~~~~pi~v~v~~~~~-~~i~i~s~~~~~~~~~~l~~ 810 (1084)
+.+.||.-|.|. -|=-| + .+. ++--.|++|++ ++.. ++|+..++ ..+.+..+. .. . +
T Consensus 6 ~~a~A~~Nial~ky~Gkrddg~---~~~vP~~dslglaL~~~~l~~~----~~v~~~~~~~~~~i~i~g-~~--~----~ 71 (380)
T 2hke_A 6 VTVEAPINIAFIKYWGKREGGE---TLILPTNDSFSITLSASPFRSK----TSVELRDDIETDTLRLNG-TE--V----D 71 (380)
T ss_dssp EEEEECCEEEEECCCCBCTTCT---TTTCBSSCEEEEEBCSSSCCEE----EEEEEESSCSSCEEEETT-EE--E----C
T ss_pred EEEEcCccchhhhhcccccCcc---cccCCCCCceEEEecCCCCceE----EEEEECCCCCccEEEECC-cc--c----C
Confidence 555566555555 22233 3 011 24457999999 8875 56655432 122332211 00 0 0
Q ss_pred CCCCCCCCChHHHHHHHHHHhhhhhhhccc---ccCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHH
Q 001402 811 IATPFDHNDPFRLVKSALLVTGVIHEKLIE---SMGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVAR 887 (1084)
Q Consensus 811 l~~p~~~~~~~~lvkaal~~~g~~~~~~~~---~~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~ 887 (1084)
. ...+++..++..+.. .... ..|++|++.++||.++|||||||.++|++.|+++++|++ ++|++
T Consensus 72 ~-------~~~~~v~~~~~~~~~---~~~~~~~~~~v~I~~~~~IP~aaGLGSSAA~aaA~l~Aln~l~gl~---~eL~~ 138 (380)
T 2hke_A 72 V-------GKTPRVQSMLLHLRS---TCPEELKNKKVNIVSENNFPTAAGMASSASGYCAMSAALIRAFKST---TNVSM 138 (380)
T ss_dssp G-------GGCHHHHHHHHHHHT---SSCHHHHTCEEEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHTCS---SCHHH
T ss_pred c-------hhHHHHHHHHHHHHH---HhcccCCCCCEEEEEeccCCCccCcchHHHHHHHHHHHHHHHcCCH---HHHHH
Confidence 0 012366666655431 1112 568999999999999999999999999999999999987 88999
Q ss_pred HHHHHHHhcCCCCcccchhhhcccceEEEecCCC-ccceeEEEEccCChhhhhccCcE--EEEEEcC-CcchHHHHHHHH
Q 001402 888 LVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSFPG-IPLRLQVIPLLASPQLILELQQR--LLVVFTG-QVRLAHQVLQKV 963 (1084)
Q Consensus 888 la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~~g-~~~~~~v~pl~~~~~~~~~l~~~--lvlv~tg-~tr~T~~iL~~v 963 (1084)
+|...+ | |++++++||++......+ ........++..+..+ .+.. +++++++ ....+....+.+
T Consensus 139 lA~~g~-------G--sva~s~~GG~v~~~~g~~~~~~~~~~~~l~~~~~~---p~l~~~vlv~~~~~~~~sst~~~r~~ 206 (380)
T 2hke_A 139 LARLGS-------G--SACRSAFGGFVIWNKGEKPDGSDCVATQFVDETHW---PEIQVMCAVLKGAQKDVSSTKGMQQS 206 (380)
T ss_dssp HHHHHC-------G--GGGGGGSSSEEEEECCSCTTSTTCEEEEEECTTSC---TTEEEEEEECCCCSCCCCHHHHHHHH
T ss_pred HHhhcC-------c--ceeeehhCCeEEEecCCCCCCCcceEEeccCcccC---CcceEEEEEecCCCCCCCCHHHHHHH
Confidence 987553 2 788999999987543210 1111234455432111 1233 3333433 344555555544
Q ss_pred HHHHhhcChHHHHHHHH-HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh----hcCCC--CCcHHHHHHHHHHcC----
Q 001402 964 VTRYLQRDNLLISSIKR-LTELAKNGRDALMNCDVDELGKIMLEAWRLHQ----ELDPH--CSNEFVDRLFAFADP---- 1032 (1084)
Q Consensus 964 ~~~~~~~~~~~~~~l~~-l~~~a~~~~~AL~~gD~~~lg~lm~~s~~~~~----~l~~~--vs~p~ld~li~~a~~---- 1032 (1084)
+... ......+++ ....+..++.||.++|++.|+++|.+++..+. .-.+. ...|...++++.+.+
T Consensus 207 ~~~~----~~~~~~~~~~~~~~~~~l~~Al~~~D~~~lg~~~~~d~~~lh~~~~~~~p~~~~l~p~~~~i~~~~~~~~~~ 282 (380)
T 2hke_A 207 LKTS----PLMKKRISETVPERMKIASRAIKARDFATFAEIAMLESDDLQEICATTEPKITYATEDSYAMIRLVKAYNAK 282 (380)
T ss_dssp HHHC----TTHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HhcC----hhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhccCCCeeEECHHHHHHHHHHHHHHHh
Confidence 3221 111122332 33456789999999999999999965433222 11221 356777777777543
Q ss_pred -C-CCeEEEcCCCccceeEEEEcChhhHHHHHHHHHhcCC
Q 001402 1033 -Y-CCGYKLVGAGGGGFALLLAKDAESATELRRMLEKDSN 1070 (1084)
Q Consensus 1033 -g-a~GaklSGAGgGG~viaL~~~~~~ae~i~~~L~~~~~ 1070 (1084)
| +.++.+||||+ ++++|+++ +.++++.+.|++.+.
T Consensus 283 ~Ga~~~a~~SGaGP--tv~~l~~~-~~~~~v~~~l~~~~~ 319 (380)
T 2hke_A 283 KGRTALAYTFDAGA--NCFLFVLK-EDLPEAVAMLMEHFP 319 (380)
T ss_dssp HTSCCEEEECCSSS--CEEEEEEG-GGHHHHHHHHHHHSC
T ss_pred cCCcceEEEECCCC--cEEEEECH-HHHHHHHHHHHHhcc
Confidence 6 77899999998 89999985 467788888877643
No 26
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila}
Probab=99.68 E-value=2.3e-15 Score=169.10 Aligned_cols=210 Identities=17% Similarity=0.114 Sum_probs=141.8
Q ss_pred cccCEEEEEEecCCCCCCCChHHHHHHHHH----HHHHHHhCCCC-CHHHHHHHHHHHHHhcCCCCcccchhhhcccceE
Q 001402 840 ESMGLQIRTWANVPRGSGLGTSSILAAAVV----KALLQITDGDQ-SNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIK 914 (1084)
Q Consensus 840 ~~~G~~I~i~S~IP~GsGLGSSSAlavA~l----~Al~~l~g~~l-s~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~ 914 (1084)
...|++|++.++||.++|||||||.++|++ .|+++++|+++ ++++|.++|..++ | |.+.+++||++
T Consensus 89 ~~~gv~I~~~n~IP~aaGLgSSAA~~aA~~~~~~~aln~l~gl~l~s~~eL~~lA~~gs-------G--saa~si~GG~v 159 (323)
T 3lto_A 89 YVGGFLIQSSNNFPHSSGLASSASSFAALTKCASIALSELTQKPLPSIDEQAQLSRLGS-------G--SSCRSFYAPWA 159 (323)
T ss_dssp CCCCEEEEEEESSCTTTTCCCHHHHHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHTTC-------G--GGGGGGSCSEE
T ss_pred CCCCEEEEEEeCCCCccCcchhHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhC-------C--CcchhhhCCEE
Confidence 457999999999999999999999999999 99999999999 9999999996432 2 67899999998
Q ss_pred EEecCCCccceeEEEEcc-CChhhhhccCcEEEEEEc-CCcchHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHH
Q 001402 915 FTSSFPGIPLRLQVIPLL-ASPQLILELQQRLLVVFT-GQVRLAHQVLQKVVTRYLQRDNLLISSIKRLTELAKNGRDAL 992 (1084)
Q Consensus 915 ~~~~~~g~~~~~~v~pl~-~~~~~~~~l~~~lvlv~t-g~tr~T~~iL~~v~~~~~~~~~~~~~~l~~l~~~a~~~~~AL 992 (1084)
.+.. + ..+++. ..++ +...++++.. .+..+|.+..+.+ + ..+.....++.....+..++.||
T Consensus 160 ~~~~--g-----~~~~l~~~~~~----l~~~v~vi~~~~~~vsT~~~~~~l-~----~~~~~~~~~~~~~~~~~~l~~AL 223 (323)
T 3lto_A 160 LWTG--D-----KVSAIDLPYKD----LLHQVIVISSQEKEIPSRVAHKLV-K----TSPFYETRSERAEANLKLLLNAF 223 (323)
T ss_dssp EEET--T-----EEEECCCSCCS----CEEEEEECCCCTTCCCHHHHHHHG-G----GSTTTTTHHHHHHHHHHHHHHHH
T ss_pred EEec--C-----cEEEccCCCCC----CeEEEEEECCCCCCCCCHHHHhhc-c----cChhHHHHHHHhHHHHHHHHHHH
Confidence 7643 2 123342 1111 2222233222 3345677765542 1 11111112233334567899999
Q ss_pred hhcCHHHHHHHHHHHHHH----HhhcCC--CCCcHHHHHHHHHH---c--CCCCeEEEcCCCccceeEEEEcChhhHHHH
Q 001402 993 MNCDVDELGKIMLEAWRL----HQELDP--HCSNEFVDRLFAFA---D--PYCCGYKLVGAGGGGFALLLAKDAESATEL 1061 (1084)
Q Consensus 993 ~~gD~~~lg~lm~~s~~~----~~~l~~--~vs~p~ld~li~~a---~--~ga~GaklSGAGgGG~viaL~~~~~~ae~i 1061 (1084)
.+||++.+++++...... ...-+| ....|...++++.+ + .|++++.++|||+ ++++|+++ +..+++
T Consensus 224 ~~gD~~~l~~~~~~d~~~LHa~~~~~~P~~~~l~p~s~~i~~~v~~~r~~~G~~~~~tsgAGP--nv~~l~~~-~~~~~v 300 (323)
T 3lto_A 224 ENKDWTSIYQICWHEFLDMHQLFKTCEKPFSYITDNTLHILSVIEKFWNEKGDGPVVTMDAGP--NVHLLYRS-DQTDLA 300 (323)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCSCCHHHHHHHHHHHHHHHHHSCCCEEECCSSS--CEEEEECG-GGHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhHHHhccCCCceecCchHHHHHHHHHHHHHhCCCeEEEEECCCC--CeEEEEec-ccHHHH
Confidence 999999999987644322 222111 12456666666555 3 2789999999999 77888875 678889
Q ss_pred HHHHHhcCCCCcEEEE
Q 001402 1062 RRMLEKDSNFNSEVYN 1077 (1084)
Q Consensus 1062 ~~~L~~~~~f~v~v~~ 1077 (1084)
.+.|++.+.-..+|.+
T Consensus 301 ~~~l~~~~~~~~~~~~ 316 (323)
T 3lto_A 301 RQFKSDHLVGNYDVLE 316 (323)
T ss_dssp HHHHHHHTTTTSEEC-
T ss_pred HHHHHHHhHhHHHHhh
Confidence 9999887655555543
No 27
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=99.61 E-value=8.8e-15 Score=171.49 Aligned_cols=269 Identities=14% Similarity=0.091 Sum_probs=170.2
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
..|++++++..+..+... .++.++|+.||+++..++..+. ..++++|+++.+++.+..+.||++.+|+++
T Consensus 107 ~~Gt~~al~~a~~~l~~~------~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~g 180 (420)
T 3brk_X 107 YEGTADAVYQNIDIIEPY------APEYMVILAGDHIYKMDYEYMLQQHVDSGADVTIGCLEVPRMEATGFGVMHVNEKD 180 (420)
T ss_dssp CCCHHHHHHTTHHHHHHH------CCSEEEEEESSCEECBCTHHHHHHHHHTTCSEEEEEEEEETTGGGGSEEEEECTTS
T ss_pred ccCCHHHHHHHHHHHHhc------CCCEEEEecccEEEchHHHHHHHHHHHcCCeEEEEEeecCccccCcccEEEECCCC
Confidence 368888887655544321 2468999999999888877764 367899999999887788899999999876
Q ss_pred CccccccccccceeEecCChhh-hhcccccCCCCcceeeeeeEEecHHHHHHHHHHhc----CCCCcccccccccc-cce
Q 001402 257 ILNENYALSLVDDLLQKPNVDE-LAKNHAILDDGRALLDTGIIAVRGKAWEELVMLSC----SCPPMVSELLKSGK-EMS 330 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~-m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~~~----~~~d~g~d~i~~~~-~~~ 330 (1084)
+|..|.+||..++ .. ..+...+.++|+|+|+.+++.+++.... ...++..|+++... +..
T Consensus 181 ---------~v~~~~ekp~~~~~~~-----~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~li~~g~ 246 (420)
T 3brk_X 181 ---------EIIDFIEKPADPPGIP-----GNEGFALASMGIYVFHTKFLMEAVRRDAADPTSSRDFGKDIIPYIVEHGK 246 (420)
T ss_dssp ---------BEEEEEESCSSCCCBT-----TBTTEEEEEEEEEEEEHHHHHHHHTSSCCC----------CTTHHHHHSC
T ss_pred ---------cEEEeEeCCCcccccc-----ccccceEEeeeeEEEeHHHHHHHHHHhcccCCccccchHHHHHHHhhhCc
Confidence 7999999997532 11 2244678999999999998877775321 11244456654411 112
Q ss_pred ec-ccccccccc---CCcCccccCCcchhHHhh----hcCCCccccccCCcccccccCcchhc-ccccccccccccccce
Q 001402 331 LY-EDLVAAWVP---AKHDWLMLRPLGKELVSK----LGKQRMFSYCAYELLFLHFGTSSEVL-DHLSGDVSGLVGRRHL 401 (1084)
Q Consensus 331 ~y-~DF~~~~~~---~~~~y~~~~~~~~~~~~a----L~~~pi~~l~~p~a~F~h~gt~~e~l-~~l~~d~~~l~~~~~~ 401 (1084)
+| +.+.....+ ....||.+..+.++|+++ +...+.+.++.+....+ +..... ...+.+. .++....+
T Consensus 247 v~~~~~~~~~~~~~~~~~~~~~dI~t~~d~~~a~~~ll~~~~~~~~~~~~~~i~---~~~~i~~~~~i~~~-~~~~~~~i 322 (420)
T 3brk_X 247 AVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIW---TYAEITPPAKFVHD-DEDRRGSA 322 (420)
T ss_dssp EEEEEHHHHBCCCTTCSSCCEECCCSHHHHHHHHHHTTSSSCSSCTTCCSSCCC---CCCCCCCCCEEECB-CSSCBCEE
T ss_pred EEEEEeccccccccccCCCEEEECCCHHHHHHHHHHHhCCCchhhcCCCCCcee---eccccCCCcEEecc-cccCCcEe
Confidence 32 223111111 113588887776777765 23333222221111110 000000 0001100 00001123
Q ss_pred eeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEeee
Q 001402 402 CSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCLWE 481 (1084)
Q Consensus 402 ~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i~~ 481 (1084)
.++.+..+|.| .++.|.+|+|+++|+|++++.|++|+|++++.||.||.|.+++|.+ ++.|.+|+.+..
T Consensus 323 ~~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~----------~~~i~~~~~i~~ 391 (420)
T 3brk_X 323 VSSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDH----------GVVIPEGLIVGE 391 (420)
T ss_dssp ESCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECT----------TCEECTTCEESS
T ss_pred cCCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECC----------CCEECCCCEEeC
Confidence 34455567666 8889999999999999999999999999999999999999999987 489999998765
Q ss_pred eec
Q 001402 482 VPL 484 (1084)
Q Consensus 482 v~l 484 (1084)
.+.
T Consensus 392 ~~~ 394 (420)
T 3brk_X 392 DPE 394 (420)
T ss_dssp CHH
T ss_pred CCC
Confidence 544
No 28
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A
Probab=99.57 E-value=1e-13 Score=158.96 Aligned_cols=205 Identities=15% Similarity=0.139 Sum_probs=138.9
Q ss_pred cCEEEEEEecCCCCCCCChHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcCCCCcccchhhhcccceEEEecC--
Q 001402 842 MGLQIRTWANVPRGSGLGTSSILAAAVVKALLQITDGDQSNENVARLVLLLEQLMGTGGGWQDQIGGLYPGIKFTSSF-- 919 (1084)
Q Consensus 842 ~G~~I~i~S~IP~GsGLGSSSAlavA~l~Al~~l~g~~ls~~eLa~la~~~E~~~gt~~G~~Dq~a~~~GG~~~~~~~-- 919 (1084)
.|++|.+.++||.++|||||||.++|++.|+++++++ +++|.++|..++ | +.++++|||++.....
T Consensus 122 ~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~s-------G--s~~~s~~GG~v~w~~~~~ 189 (414)
T 3f0n_A 122 YKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGS-------G--SACRSLYGGFVEWQMGEQ 189 (414)
T ss_dssp SCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHC-------G--GGGGGGSSSEEEECCCSC
T ss_pred CcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhC-------C--CcchHhhCCEEEEEeccC
Confidence 6899999999999999999999999999999999998 467888886553 2 6788999999988654
Q ss_pred -CCccceeEEEEccCChhhhhccCcEEEEEEc---CCcchHHHHHHHHHHHHhhcChHHHHHHHH-HHHHHHHHHHHHhh
Q 001402 920 -PGIPLRLQVIPLLASPQLILELQQRLLVVFT---GQVRLAHQVLQKVVTRYLQRDNLLISSIKR-LTELAKNGRDALMN 994 (1084)
Q Consensus 920 -~g~~~~~~v~pl~~~~~~~~~l~~~lvlv~t---g~tr~T~~iL~~v~~~~~~~~~~~~~~l~~-l~~~a~~~~~AL~~ 994 (1084)
++... ...+++.+..+ .+..++++.+ .++.++++.++.++.. ...+...+++ ....+..++.||.+
T Consensus 190 ~d~~ds--~a~~i~~~~~w---p~L~ivvlv~~~~~K~vsST~~mr~~l~t----s~~~~~~v~~~~~~~~~~l~~AL~~ 260 (414)
T 3f0n_A 190 ADGKDS--IARQIAPEWHW---PQLRILILVVSADKKQTGSTVGMQTSVET----STLLKFRAESVVPERMKEMTRCIQE 260 (414)
T ss_dssp TTCTTC--CEEEEECTTSC---TTEEEEEEEESCCC-CCCHHHHHHHHHHH----CHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred CCCCce--EEEEcccccCC---CCceEEEEEeCccccCCCchHHHHhhccc----CccHHHHHHHHHHHHHHHHHHHHHc
Confidence 22211 22344321111 1345544442 3344566666654332 1222233444 44566789999999
Q ss_pred cCHHHHHHHHHHH----HHHHhhcCC--CCCcHHHHHHHHHHcC------CCCeEEEcCCCccceeEEEEcChhhHHHHH
Q 001402 995 CDVDELGKIMLEA----WRLHQELDP--HCSNEFVDRLFAFADP------YCCGYKLVGAGGGGFALLLAKDAESATELR 1062 (1084)
Q Consensus 995 gD~~~lg~lm~~s----~~~~~~l~~--~vs~p~ld~li~~a~~------ga~GaklSGAGgGG~viaL~~~~~~ae~i~ 1062 (1084)
+|++.|++++... |+..+.-.| ....|...++++.+.+ ++.++.++|||+ ++++|+.+ +..++|.
T Consensus 261 gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~~~~tsdAGP--nv~vl~~~-~~~~~v~ 337 (414)
T 3f0n_A 261 QDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTKVAYTFDAGP--NAVIFTLE-DTVAEFV 337 (414)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCCEEEECCSSS--CEEEEEEH-HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCceEEEEECCCC--CEEEEEec-ccHHHHH
Confidence 9999999987644 222222111 1346777777666543 678999999999 77888874 6788899
Q ss_pred HHHHhcCC
Q 001402 1063 RMLEKDSN 1070 (1084)
Q Consensus 1063 ~~L~~~~~ 1070 (1084)
+.|++.+.
T Consensus 338 ~~l~~~f~ 345 (414)
T 3f0n_A 338 AAVRHSFP 345 (414)
T ss_dssp HHHHHHSC
T ss_pred HHHHHhcC
Confidence 99887643
No 29
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=99.52 E-value=2e-13 Score=161.45 Aligned_cols=256 Identities=14% Similarity=0.113 Sum_probs=161.8
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
++.|++++++..+..+... ..+.++|+.||+++..++..+. ..++++|++..+++.+..+.||++.+|++
T Consensus 116 ~~~Gt~~al~~a~~~~~~~------~~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~tl~~~~~~~~~~~~~g~v~~d~~ 189 (451)
T 1yp2_A 116 WFQGTADAVRQYLWLFEEH------TVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEE 189 (451)
T ss_dssp CCCSHHHHHHHTHHHHTTS------CCSEEEEECSCEECCCCHHHHHHHHHHTTCSEEEEEEEECHHHHTTSEEEEECTT
T ss_pred cccCcHHHHHHHHHHHHhc------CCCeEEEecCcEEEcCCHHHHHHHHHHcCCcEEEEEEEcChhhcccCCEEEECCC
Confidence 3468888887765544321 2468999999999888887764 36789999999998778899999999977
Q ss_pred CCccccccccccceeEecCChhhhhcc---cc-cC------CCCcceeeeeeEEecHHHHHHHHHHh-cCCCCccccccc
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKN---HA-IL------DDGRALLDTGIIAVRGKAWEELVMLS-CSCPPMVSELLK 324 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~---~a-v~------~~~~~l~s~Giy~f~~~~~~~ll~~~-~~~~d~g~d~i~ 324 (1084)
+ +|..|.|||..++.... .. +. .....++++|+|+|+.+++.+++... ....++..|+++
T Consensus 190 ~---------~v~~~~ekp~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~l~ 260 (451)
T 1yp2_A 190 G---------RIIEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGANDFGSEVIP 260 (451)
T ss_dssp S---------BEEEEEESCCHHHHHHTCCCGGGGSCCHHHHHHCCEEEEEEEEEEEHHHHHHHHHTTCTTCCCTTTTHHH
T ss_pred C---------CEEEEEECCCchhhccccccccccccccccccCCcceEEeeEEEEcHHHHHHHHHhhcccccchHhhHHH
Confidence 6 79999999986531100 00 00 11345889999999999988887643 123455556554
Q ss_pred cc----ccceeccccccccccCCcCccccCCcchhHHhh---h-cCC-CccccccCCcccccccCcchhccccccccccc
Q 001402 325 SG----KEMSLYEDLVAAWVPAKHDWLMLRPLGKELVSK---L-GKQ-RMFSYCAYELLFLHFGTSSEVLDHLSGDVSGL 395 (1084)
Q Consensus 325 ~~----~~~~~y~DF~~~~~~~~~~y~~~~~~~~~~~~a---L-~~~-pi~~l~~p~a~F~h~gt~~e~l~~l~~d~~~l 395 (1084)
.. .++.+| .+ ..||.+.++.++|.++ + ... +-.++..|.+.. ++...+ .....+
T Consensus 261 ~~i~~g~~v~~~-~~--------~~~w~digt~~~l~~a~~~l~~~~~~~~~~~~~~~~i---~~~~~i-----~~~~~i 323 (451)
T 1yp2_A 261 GATSLGMRVQAY-LY--------DGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPI---YTQPRY-----LPPSKM 323 (451)
T ss_dssp HHHHTTCCEEEE-EC--------CSCCEECSSHHHHHHHHHGGGCSSSCSSCSCCSSSCC---CCCCCC-----CCCEEE
T ss_pred HHHhcCCceEEE-Ee--------CCEEEECCCHHHHHHHHHHHhcccccchhccCCCCee---ccCCcc-----CCCeEE
Confidence 31 112222 11 3477777666677665 1 111 111222222211 111111 000011
Q ss_pred ccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCC-------------------cEECCCCeEeccc
Q 001402 396 VGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSG-------------------IQIGSLSIVVGTN 456 (1084)
Q Consensus 396 ~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~-------------------v~IG~~~iIsg~~ 456 (1084)
....+.++.+..+|.|.. +.|.+|+|+.+|.|++++.|++|++.++ +.||.||.|.+++
T Consensus 324 -~~~~I~~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~ 401 (451)
T 1yp2_A 324 -LDADVTDSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAI 401 (451)
T ss_dssp -EEEEEEEEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEE
T ss_pred -cceEEeCeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccE
Confidence 011123344445655543 6778899999999999999999999888 8999999998888
Q ss_pred cCCCCCCCCCCCcceEeCCCcEe
Q 001402 457 FPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 457 i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
|..+ +.|.+|+.+
T Consensus 402 Ig~~----------~~IG~~~~i 414 (451)
T 1yp2_A 402 IDKN----------ARIGDNVKI 414 (451)
T ss_dssp ECTT----------CEECTTCEE
T ss_pred eCCC----------cEECCCCEE
Confidence 8763 777777654
No 30
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=98.91 E-value=4e-09 Score=124.87 Aligned_cols=104 Identities=13% Similarity=0.166 Sum_probs=73.6
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
.|+.++++..+..+.. ..+.++|+.||+ +...++..+. ..++++|+++.+++ ..+.||++.+|++
T Consensus 85 ~G~~~sl~~a~~~~~~-------~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~i~~~~~~--~~~~~g~v~~d~~ 155 (468)
T 1hm9_A 85 LGTGHAVMMTEPILEG-------LSGHTLVIAGDTPLITGESLKNLIDFHINHKNVATILTAETD--NPFGYGRIVRNDN 155 (468)
T ss_dssp CCHHHHHHTTHHHHTT-------CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEECS--CCTTSCEEEECTT
T ss_pred CChHHHHHHHHHHhcc-------CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEeccC--CCCceeEEEECCC
Confidence 5677776654443321 246899999999 5556666653 35788888887764 4567999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+ +|..|.+||...+- .+...+..+|+|+|+.+.+.+++.
T Consensus 156 g---------~v~~~~ek~~~~~~-------~~~~~~~~~Giy~f~~~~l~~~l~ 194 (468)
T 1hm9_A 156 A---------EVLRIVEQKDATDF-------EKQIKEINTGTYVFDNERLFEALK 194 (468)
T ss_dssp C---------CEEEEECTTTCCTT-------GGGCCEEEEEEEEEEHHHHHHHHT
T ss_pred C---------CEEEEEECCCCChH-------HhcCeEEEEEEEEEEHHHHHHHHH
Confidence 7 79999999863210 012357899999999998777765
No 31
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=98.81 E-value=2e-08 Score=120.22 Aligned_cols=108 Identities=16% Similarity=0.165 Sum_probs=81.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC--ccccC----cCCCcEEEEEEEcChhccccceEEEEC
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD--ASTMI----LPEDASCIITVPITLDIASNHGVIVAA 253 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md--~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d 253 (1084)
.+.|+++++++.+-.+..+ .++.++|+.||+.+... +..|. ..++++|+++.++ +..+.||+++.|
T Consensus 91 ~~lGTa~Av~~a~~~l~~~------~~~~~lvl~gd~~l~~~~~~~~l~~~h~~~~~~~ti~~~~~--~dp~~yG~i~~~ 162 (501)
T 3st8_A 91 RPLGTGHAVLCGLSALPDD------YAGNVVVTSGDTPLLDADTLADLIATHRAVSAAVTVLTTTL--DDPFGYGRILRT 162 (501)
T ss_dssp SCCCHHHHHHHHHTTSCTT------CCSEEEEEETTCTTCCHHHHHHHHHHHHHTTCSEEEEEEEC--SCCTTSCEEEEC
T ss_pred CCCCcHHHHHHHHHHhccc------cccceeeecCcceeecHHHHHHHHHHHhhccccceEeeecc--CCchhccccccc
Confidence 4568999988777665543 25789999999865433 33442 5788999998876 478899999999
Q ss_pred CCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 254 KDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 254 ~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+++ +|..|.|||..++-. ....++.+|+|+|+.+.+.+++..
T Consensus 163 ~~g---------~v~~ivEk~~~~~~~-------~~i~~in~Giy~f~~~~l~~~l~~ 204 (501)
T 3st8_A 163 QDH---------EVMAIVEQTDATPSQ-------REIREVNAGVYAFDIAALRSALSR 204 (501)
T ss_dssp TTC---------CEEEEECGGGCCHHH-------HHCCEEEEEEEEEEHHHHHHHHTT
T ss_pred cce---------eEEeeccccCCChhh-------ccceeeeceeeeecchhHHHhhhh
Confidence 998 899999999753211 112367999999999999988864
No 32
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=98.69 E-value=7.1e-09 Score=119.55 Aligned_cols=73 Identities=8% Similarity=0.054 Sum_probs=47.6
Q ss_pred EEEcCCccccc--CccccC-cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccC
Q 001402 210 FTMTGDVLPCF--DASTMI-LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 286 (1084)
Q Consensus 210 lV~sgD~I~~m--d~~~~~-~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~ 286 (1084)
||--|||||+| |+.+|. .-++ |+.+ .+.++.|||..+|..+++ +| .|++||+.++
T Consensus 14 ~~~~~dhiy~m~~~l~~i~~~h~~--tl~g----~~~~~~~Gv~~ld~a~~g-------~I-~F~ekPk~~~-------- 71 (374)
T 2iu8_A 14 LVPRGSHMSQSTYSLEQLADFLKV--EFQG----NGATLLSGVEEIEEAKTA-------HI-TFLDNEKYAK-------- 71 (374)
T ss_dssp -------CCSCCEEHHHHHHHTTC--EEES----CTTCEECEECCTTTCCTT-------EE-EECCSSSTHH--------
T ss_pred cccCccccccCcCcHHHHHHhhCC--EEEC----CCcceEEEEeccccCCCC-------eE-EEEeCchhhh--------
Confidence 56679999999 788875 3343 4554 457788999999965421 45 9999998642
Q ss_pred CCCcceeeeeeEEecHHHHH
Q 001402 287 DDGRALLDTGIIAVRGKAWE 306 (1084)
Q Consensus 287 ~~~~~l~s~Giy~f~~~~~~ 306 (1084)
...+++||+|+|+++.+.
T Consensus 72 --~~~~~~aGiyI~~~~~l~ 89 (374)
T 2iu8_A 72 --HLKSSEAGAIIISRTQFQ 89 (374)
T ss_dssp --HHHTCCCSEEEEEHHHHH
T ss_pred --hhhcCCcEEEEeChhHhh
Confidence 235679999999988654
No 33
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=98.65 E-value=6.3e-08 Score=114.19 Aligned_cols=103 Identities=20% Similarity=0.329 Sum_probs=69.8
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC--cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI--LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~--~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+.++++..+..+ .+.+.++|+.||+ +...++..+. ..+.++++++.++ +....||++..| ++
T Consensus 83 ~g~~~~i~~~~~~~--------~~~~~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~--~~~~~~g~v~~~-~g- 150 (459)
T 4fce_A 83 LGTGHAMQQAAPHF--------ADDEDILMLYGDVPLISVDTLQRLLAAKPEGGIGLLTVKL--DNPSGYGRIVRE-NG- 150 (459)
T ss_dssp CCHHHHHHHHGGGS--------CTTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEEC--SCCTTSCEEEEE-TT-
T ss_pred CCcHHHHHHHHHhc--------CCCCcEEEEeCCcccCCHHHHHHHHHHHhhCCEEEEEEec--CCCCcccEEEeC-CC-
Confidence 46666655433222 2247999999998 4445555553 2346777777765 345789999987 55
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
+|..|.+||...+- .+...+..+|+|+|+.+.+.+++..
T Consensus 151 --------~v~~~~ek~~~~~~-------~~~~~~~~~Giy~~~~~~l~~~l~~ 189 (459)
T 4fce_A 151 --------DVVGIVEHKDASDA-------QREINEINTGILVANGRDLKRWLSL 189 (459)
T ss_dssp --------EEEEEECGGGCCTT-------GGGCCEEEEEEEEEEHHHHHHHHHT
T ss_pred --------cEEEEEECCCCChH-------HhhccEEEEEEEEEEHHHHHHHHHH
Confidence 79999999864211 1223478999999999998888764
No 34
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=98.61 E-value=1.1e-07 Score=112.11 Aligned_cols=102 Identities=17% Similarity=0.291 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCc--ccccCccccC--cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDV--LPCFDASTMI--LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~--I~~md~~~~~--~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+.++++..+..+ ...+.++|+.||+ +...++..+. ...+++++++.+.+ ....||++..| ++
T Consensus 80 ~g~~~~~~~~~~~~--------~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~--~~~~~g~v~~~-~g- 147 (456)
T 2v0h_A 80 LGTAHAVQQAAPFF--------KDNENIVVLYGDAPLITKETLEKLIEAKPENGIALLTVNLD--NPTGYGRIIRE-NG- 147 (456)
T ss_dssp CCHHHHHHHHGGGC--------CTTSEEEEEETTCTTCCHHHHHHHHHHCCTTSEEEEEEECS--SCTTSCEEEEE-TT-
T ss_pred CCcHHHHHHHHHhc--------CCCCeEEEEcCCcceeCHHHHHHHHHHHhcCCEEEEEeecC--CCCccceEEEc-CC-
Confidence 46666655443221 1256899999999 4455565553 22267888877764 34669998887 55
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|..|.+||...+-. +...+..+|+|+|+.+.+.+++.
T Consensus 148 --------~v~~~~ek~~~~~~~-------~~~~~~~~Giy~~~~~~l~~~l~ 185 (456)
T 2v0h_A 148 --------NVVAIVEQKDANAEQ-------LNIKEVNTGVMVSDGASFKKWLA 185 (456)
T ss_dssp --------EEEEEECTTTCCHHH-------HTCCEEEEEEEEEEHHHHHHHHT
T ss_pred --------cEEEEEECCCCChhH-------hcCcEEEEEEEEEEHHHHHHHHH
Confidence 789999998742211 12357899999999988777765
No 35
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=98.61 E-value=1.5e-07 Score=109.15 Aligned_cols=80 Identities=19% Similarity=0.377 Sum_probs=60.8
Q ss_pred CCeEEEEcCCcccc--cCccccCcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhccc
Q 001402 206 EGGIFTMTGDVLPC--FDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNH 283 (1084)
Q Consensus 206 p~gVlV~sgD~I~~--md~~~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~ 283 (1084)
.+.++|+.+|+++. .++..+.. .+++++++.+++ ....+|++..|+++ +|..|.+||..+
T Consensus 90 ~~~~lv~~~D~~~~~~~~~~~l~~-~~~~~i~~~~~~--~~~~~~~v~~~~~g---------~v~~~~ek~~~~------ 151 (401)
T 2ggo_A 90 NDEALIIYGDLFFSNEKEICNIIT-LKENAIIGVKVS--NPKDYGVLVLDNQN---------NLSKIIEKPEIP------ 151 (401)
T ss_dssp SSEEEEEETTEEESCSHHHHHHTT-CSSEEEEEEECS--CCSSSCEEEECTTS---------SEEEEECSCSSC------
T ss_pred CCCEEEEeCccccccHHHHHHHHH-hcCCEEEEEEcC--CCcceeEEEECCCC---------eEEEEEECCCCC------
Confidence 35799999999876 55555544 577888888764 34579999998776 789999999653
Q ss_pred ccCCCCcceeeeeeEEecHHHHHHH
Q 001402 284 AILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 284 av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
...+..+|+|+|+.++++.+
T Consensus 152 -----~~~~~~~Giy~~~~~~~~~l 171 (401)
T 2ggo_A 152 -----PSNLINAGIYKLNSDIFTYL 171 (401)
T ss_dssp -----SCSEEEEEEEEEETHHHHHH
T ss_pred -----CCcEEEEEEEEEcHHHHHHh
Confidence 23578999999999987543
No 36
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Probab=98.05 E-value=1.3e-06 Score=103.36 Aligned_cols=57 Identities=14% Similarity=-0.066 Sum_probs=44.4
Q ss_pred CCcccccCcccc--CcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhh
Q 001402 214 GDVLPCFDASTM--ILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDE 278 (1084)
Q Consensus 214 gD~I~~md~~~~--~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~ 278 (1084)
-=.+|+||+..- ...++++|++..++|+++|.. +..+|++.. ++ +|.+|.|||..+.
T Consensus 95 ~~~~Yk~d~~~d~~~~~g~~vt~~~~~~pL~~a~~--i~~~d~~~~--~t----~V~~~~~kpd~~~ 153 (496)
T 3c8v_A 95 HSALYKSDIRGDELKRKGQHFVCDGKMIPLHDDEV--ITIKDSFLN--KT----LVHSNSHDPESPE 153 (496)
T ss_dssp SCEEESCEEECTTCCCTTCEEEETTEEEECSSCCE--EEEESCEEE--SC----EEESCCCCTTCTT
T ss_pred eeeeeeehhhHHHHhhcCCEEEEEecccchhHhhh--HHhhhhcCC--ce----EEeccccCCCCcc
Confidence 345899998763 258899999999999999988 888887641 12 6888999998763
No 37
>3juk_A UDP-glucose pyrophosphorylase (GALU); transfer; HET: UPG; 2.30A {Helicobacter pylori} PDB: 3juj_A*
Probab=97.39 E-value=0.00016 Score=79.44 Aligned_cols=104 Identities=19% Similarity=0.218 Sum_probs=75.9
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC-----ccccC----cCCCcEEEEEEEcChhccccceEE
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD-----ASTMI----LPEDASCIITVPITLDIASNHGVI 250 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md-----~~~~~----~~~a~vtv~a~pv~~~~As~hGV~ 250 (1084)
.+.|+.++++..+-.+. .+.++|+.||+++..| +..+. ..++ +|++..+++.+..++||++
T Consensus 104 ~~~Gt~~al~~a~~~l~---------~~~~lv~~~D~~~~~~~~~~~l~~l~~~~~~~~~-~~v~~~~~~~~~~~~~g~v 173 (281)
T 3juk_A 104 QMKGLGHAILTGEALIG---------NEPFAVILADDLCISHDHPSVLKQMTSLYQKYQC-SIVAIEEVALEEVSKYGVI 173 (281)
T ss_dssp SCCCHHHHHHHTHHHHC---------SSCEEEECTTEEEECTTSCCHHHHHHHHHHHHCS-CEEEEEECCTTTGGGSEEE
T ss_pred CCCCcHHHHHHHHHHcC---------CCCEEEEeCCeeccCccchHHHHHHHHHHHHcCC-CEEEEEEechhhcccCCEE
Confidence 34688888776544331 2479999999999998 66664 3455 6777788888889999999
Q ss_pred EECC--CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 251 VAAK--DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 251 ~~d~--~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
.+|+ ++ .+ +|..|.|||..++ +...++.+|+|+|+.+.++ .+.
T Consensus 174 ~~~~~~~g----~~---~v~~~~Ekp~~~~---------~~~~~~~~GiYi~~~~~l~-~l~ 218 (281)
T 3juk_A 174 RGEWLEEG----VY---EIKDMVEKPNQED---------APSNLAVIGRYILTPDIFE-ILS 218 (281)
T ss_dssp EEEEEETT----EE---EEEEEEESCCTTT---------CSCSEEEEEEEEECTTHHH-HHH
T ss_pred EeccCCCC----ce---EEeEEEECcCCCC---------CCcceeEEEEEEECHHHHH-HHH
Confidence 9985 43 11 5899999998532 2245779999999998774 444
No 38
>4ecm_A Glucose-1-phosphate thymidylyltransferase; HET: DAU; 2.30A {Bacillus anthracis} PDB: 3hl3_A*
Probab=97.11 E-value=0.00088 Score=73.13 Aligned_cols=94 Identities=14% Similarity=0.136 Sum_probs=70.6
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDG 256 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~ 256 (1084)
+.|+.++++..+-.+. .+.++|+.||+++..++..+. ..++++|+++.+++ ..+.||++..|+ +
T Consensus 107 ~~G~~~al~~a~~~~~---------~~~~lv~~~D~~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~g~v~~d~-g 174 (269)
T 4ecm_A 107 AGGIAQALGLCEDFVG---------NDRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSVD--DPERFGVANIQN-R 174 (269)
T ss_dssp CCCHHHHHHTTHHHHT---------TSEEEEEETTEEESSCSHHHHHHHHTSSSSEEEEEEECS--CGGGSEEEEEET-T
T ss_pred cCcHHHHHHHHHHhcC---------CCcEEEEeCCccCccCHHHHHHHHHhcCCCeEEEEEECC--CCCCceEEEEcC-C
Confidence 3577777654433221 358999999999988877764 46788888888765 357899999985 5
Q ss_pred CccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHH
Q 001402 257 ILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWE 306 (1084)
Q Consensus 257 ~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~ 306 (1084)
+|..|.+||..+ ...++.+|+|+|+.+.++
T Consensus 175 ---------~v~~~~ekp~~~-----------~~~~~~~Giy~~~~~~l~ 204 (269)
T 4ecm_A 175 ---------KIIEIEEKPKEP-----------KSSYAVTGIYLYDSKVFS 204 (269)
T ss_dssp ---------EEEEEEESCSSC-----------SCSEEEEEEEEECTTHHH
T ss_pred ---------EEEEEEECCCCC-----------CCcEEEEEEEEECHHHHH
Confidence 799999999542 345789999999998763
No 39
>2qh5_A PMI, ALGA, mannose-6-phosphate isomerase; structural genomics, PSI, protein structure initi nysgrc; 2.30A {Helicobacter pylori}
Probab=96.99 E-value=0.00065 Score=75.82 Aligned_cols=108 Identities=12% Similarity=0.106 Sum_probs=74.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccC-ccccC-------cCCCcEEEEEEEcChhccccceEEE
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFD-ASTMI-------LPEDASCIITVPITLDIASNHGVIV 251 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md-~~~~~-------~~~a~vtv~a~pv~~~~As~hGV~~ 251 (1084)
+.|++++++..+..+. ..+.++|+.||+++ ..+ +.++. ..++++|+...|... .+.||++.
T Consensus 87 ~~gt~~al~~a~~~l~--------~~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~--~~~~g~i~ 156 (308)
T 2qh5_A 87 SKNTANAIALSALMSD--------KEDLLIVTPSDHLIKDLQAYENAIKKAIDLAQKGFLVTFGVSIDKP--NTEFGYIE 156 (308)
T ss_dssp CCCHHHHHHHHHHTSC--------TTSEEEEEESSCBCCCHHHHHHHHHHHHHHHHTTCEEEEEEECSSC--CTTSEEEE
T ss_pred CCChHHHHHHHHHHhC--------CCCeEEEEcCCccccCHHHHHHHHHHHHHHHhcCCEEEEEEecCCC--CCCceEEE
Confidence 3578887665443321 12369999999997 566 55553 246778888777643 47899999
Q ss_pred ECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 252 AAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 252 ~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|+++ +|..|.+||..++-+. . ..++..+..+|+|+|+.+++.+.+.
T Consensus 157 ~d~~~---------~V~~~~Ekp~~~~~~~--~-~~~g~~~~n~Giy~~~~~~ll~~l~ 203 (308)
T 2qh5_A 157 SPNGL---------DVKRFIEKPSLDKAIE--F-QKSGGFYFNSGMFVFQAGVFLDELK 203 (308)
T ss_dssp CSSSS---------BCSEEEESCCHHHHHH--H-HHHCCEEEEEEEEEEEHHHHHHHHH
T ss_pred ECCCC---------EEEEEEECCChHHHHH--H-hhcCCeEEEeEEEEEEHHHHHHHHH
Confidence 88655 7999999998653211 0 1134568899999999998766655
No 40
>3pnn_A Conserved domain protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE GOL; 1.90A {Porphyromonas gingivalis}
Probab=96.98 E-value=0.00053 Score=76.44 Aligned_cols=109 Identities=9% Similarity=0.105 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC-ccccC-------cCCCcEEEEEEEcChh---c-cccce
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD-ASTMI-------LPEDASCIITVPITLD---I-ASNHG 248 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md-~~~~~-------~~~a~vtv~a~pv~~~---~-As~hG 248 (1084)
+.|+.++++..+-.+ .+.++|+.||+++..+ +.+|. ..++++|+++.+++-. + +.++|
T Consensus 100 ~~Gt~~al~~a~~~i----------~~~~lV~~gD~l~~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~g~~~~G 169 (303)
T 3pnn_A 100 PWGTNHAVLMGRDAI----------REPFAVINADDFYGRNGFEVLARKLMTLEGKQGEYCMVGYRVGNTLSESGGVSRG 169 (303)
T ss_dssp CCCHHHHHHTTTTTC----------CSCEEEEESSCBCCHHHHHHHHHHHHTTTTCSSEEEEEEEEGGGSCBTTBCEEEE
T ss_pred cCCcHHHHHHHHHhc----------CCCEEEEECCeecCHHHHHHHHHHHHHhccccCceEEEEEECCCccCccCceeee
Confidence 457788765443322 2468899999998876 66663 1568899999887421 1 23458
Q ss_pred EEEECCCCCccccccccccceeEecCChhhhhccccc-CC-------CCcceeeeeeEEecHHHHHHH
Q 001402 249 VIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI-LD-------DGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 249 V~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av-~~-------~~~~l~s~Giy~f~~~~~~~l 308 (1084)
|+++|+++ +|+.|.|||..++-.+.... .. +...+++||+|+|+.++++.+
T Consensus 170 ~v~~d~~g---------~v~~i~Ekp~~~~~~~~~~~~~~~g~~~~~~~~~~i~~GiY~f~~~~~~~l 228 (303)
T 3pnn_A 170 VCQVDEKH---------LLTGVVERTGIERTDGTISFRDETGKICTLAEDAPVSMNMWGFTPDYFDYS 228 (303)
T ss_dssp EEEECTTS---------BEEEEEEEEEEEEETTEEEEECTTSCEEEECTTCEEEEEEEEECTHHHHHH
T ss_pred eEeeCCCC---------cEEEEEECCCCccccccccccccccccccCCCCCEEEEEEEEECHHHHHHH
Confidence 99999887 89999999975310000000 00 235688999999999987554
No 41
>2pa4_A UTP-glucose-1-phosphate uridylyltransferase; phosphorylase, nucleotidyltransferase, metabolism; HET: GUD; 2.00A {Corynebacterium glutamicum atcc 13032}
Probab=96.92 E-value=0.00088 Score=75.27 Aligned_cols=104 Identities=18% Similarity=0.162 Sum_probs=70.4
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc--cCccccC----cCCCcEEEEEEEcChhccccceEEEEC-
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC--FDASTMI----LPEDASCIITVPITLDIASNHGVIVAA- 253 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~--md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d- 253 (1084)
+.|+.++++..+..+. ..+++++|+.||+++. .++..+. ..++ +|++..+++.+..+.||++.+|
T Consensus 115 ~~Gt~~al~~a~~~l~-------~~~d~~lv~~~D~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~d~ 186 (323)
T 2pa4_A 115 PLGLGHAVGLAESVLD-------DDEDVVAVMLPDDLVLPTGVMERMAQVRAEFGG-SVLCAVEVSEADVSKYGIFEIEA 186 (323)
T ss_dssp CCCHHHHHHTTGGGSC-------SSCCEEEEECTTEEEESSCHHHHHHHHHHTTCS-EEEEEEECCGGGGGGSEEEEEEE
T ss_pred cCCcHHHHHHHHHHhc-------CCCCeEEEEeCCcccCchHHHHHHHHHHHhcCC-cEEEEEEecccccCCccEEEeCC
Confidence 3577877654332221 1356799999999985 4555553 2343 5666778888888999999887
Q ss_pred ---CCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 254 ---KDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 254 ---~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+++ ..+|..|.+||..+. +...+..+|+|+|+.+.+..+
T Consensus 187 ~~~~~~-------~~~V~~~~Ekp~~~~---------~~~~~~~~GiY~~~~~~~~~l 228 (323)
T 2pa4_A 187 DTKDSD-------VKKVKGMVEKPAIED---------APSRLAATGRYLLDRKIFDAL 228 (323)
T ss_dssp CCSSTT-------EEEEEEEEESCCTTT---------CSCSEEEEEEEEEETHHHHHH
T ss_pred cccCCC-------ceeEEEEEECCCCcc---------ccccEEEEEEEEECHHHHHHH
Confidence 332 016899999997532 234578999999999876443
No 42
>2x65_A Mannose-1-phosphate guanylyltransferase; nucleotidyltransferase; HET: M1P; 2.10A {Thermotoga maritima} PDB: 2x5z_A* 2x60_A* 2x5s_A*
Probab=96.57 E-value=0.0011 Score=75.01 Aligned_cols=113 Identities=15% Similarity=0.188 Sum_probs=71.9
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccccc--Ccccc----C----cCCCcEEEEEEEcChhccccceEEE
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCF--DASTM----I----LPEDASCIITVPITLDIASNHGVIV 251 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~m--d~~~~----~----~~~a~vtv~a~pv~~~~As~hGV~~ 251 (1084)
.|+++++...... ....+.++|+.|||++.. ++... . ..++.+|+...|..++ +.||++.
T Consensus 84 ~gta~ai~~a~~~--------~~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~~vt~~i~p~~~~--~~yG~I~ 153 (336)
T 2x65_A 84 KNTAPACFIGTKL--------ADDDEPVLVLPADHRIPDTKKFWKTVKKALDALEKYDGLFTFGIVPTRPE--TGYGYIE 153 (336)
T ss_dssp CCHHHHHHHHHTT--------SCTTCEEEEEETTCBCCCHHHHHHHHHHHHHHHHHHCSEEEEEECCCSCC--SSSEEEE
T ss_pred CCcHHHHHHHHHh--------hCCCCEEEEEcCCceeccHHHHHHHHHHHHHHHHhcCCeEEEEeecccCC--CCceEEE
Confidence 4677776543321 112467999999998764 33222 1 2267777777776554 7899999
Q ss_pred ECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 252 AAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 252 ~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
.|++-.. ...+|..|.|||..+..++ . ..++..+..+|+|+|+.+++.+.+..
T Consensus 154 ~~~~~~~----~~~~V~~f~EKp~~~~a~~--~-~~~g~y~~n~Giy~~~~~~ll~~l~~ 206 (336)
T 2x65_A 154 IGEELEE----GVHKVAQFREKPDLETAKK--F-VESGRFLWNSGMFLWKAREFIEEVKV 206 (336)
T ss_dssp EEEEEET----TEEEEEEEEESCCHHHHHH--H-HHHTCEEEEEEEEEEEHHHHHHHHHH
T ss_pred ECCccCC----CccEEEEEEECCChHHHHH--H-HhcCCeEEEeeeEEEEHHHHHHHHHH
Confidence 8753000 0117899999998753221 0 11456789999999999988666653
No 43
>4evw_A Nucleoside-diphosphate-sugar pyrophosphorylase; structural genomics, PSI-biology; HET: MSE; 1.90A {Vibrio cholerae}
Probab=96.53 E-value=0.0082 Score=65.01 Aligned_cols=97 Identities=13% Similarity=0.121 Sum_probs=68.2
Q ss_pred CCCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccCccccCcCCCcEEEEEEEcChhccccceEEEECCCCCc
Q 001402 180 DPDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFDASTMILPEDASCIITVPITLDIASNHGVIVAAKDGIL 258 (1084)
Q Consensus 180 ~~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md~~~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~ 258 (1084)
.+.|++++++..+..+... .....+.++|+.||+++ ..++..+ ..++++|+++.+++- .+||++..|+++
T Consensus 83 ~~~Gt~~av~~a~~~l~~~---~~~~~~~~lV~~gD~l~~~~~~~~~-~~~~~~~i~~~~~~~---p~yG~v~~d~~g-- 153 (255)
T 4evw_A 83 ETRGQAETVTLGLEELAKQ---GVDYQGSITVFNIDTFRPNFVFPDI-SQHSDGYLEVFQGGG---DNWSFAKPEHAG-- 153 (255)
T ss_dssp CCSSHHHHHHHHHHHHHHT---TCCCCSCEEECCTTEECTTCCCCGG-GGSSSEEEEEEECCS---SCSCEEEESSTT--
T ss_pred CCCCHHHHHHHHHHHHhhc---ccCCCCcEEEEeCCEEEecchhHHH-hhcCCcEEEEEecCC---CceeEEEECCCC--
Confidence 3468899988777666310 00013359999999988 4555554 366788899888763 499999998764
Q ss_pred cccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHH
Q 001402 259 NENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGK 303 (1084)
Q Consensus 259 ~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~ 303 (1084)
.+ +|++|.||+.. ..++++|+|+|+..
T Consensus 154 --~~---~V~~i~EK~~~-------------s~~~~~GiY~f~~~ 180 (255)
T 4evw_A 154 --ST---KVIQTAEKNPI-------------SDLCSTGLYHFNRK 180 (255)
T ss_dssp --CC---BEEEEESSSCS-------------SSEEEEEEEEESCH
T ss_pred --Ce---EEEEEEeccCc-------------cCcEEEeEEEECcH
Confidence 11 68999999432 23789999999985
No 44
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A
Probab=96.36 E-value=0.0076 Score=63.30 Aligned_cols=61 Identities=16% Similarity=0.305 Sum_probs=37.9
Q ss_pred CceeeeccEEEe-ccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 409 VSDIAASAVVLS-SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 409 g~~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
+|.|..++.|.. ++|+.+|.|+.+++|.+++|++++.||.+++|.++.|.. ...||+++.+
T Consensus 117 ~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~~~~Igags~V~~~~i~~----------~~~v~~~~vv 178 (213)
T 3kwd_A 117 NVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGAGCVVMMHVLIQDVEIPP----------GKYVPSGMVI 178 (213)
T ss_dssp TCEECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECSSCEEESCEECT----------TBEECTTCEE
T ss_pred CcEECCCcEEcCCCEECCCCEECCCCEEeCcEECCCCEEcCCCEECCcEeCC----------CCEECCCcEE
Confidence 344455555555 666667777777777666667677777777666665544 2566666644
No 45
>2e3d_A UTP--glucose-1-phosphate uridylyltransferase; UDP-glucose, carbohydrate, pyrophosphorylase; 1.95A {Escherichia coli}
Probab=96.33 E-value=0.0052 Score=68.06 Aligned_cols=99 Identities=17% Similarity=0.214 Sum_probs=66.3
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccccc--------CccccC----cCCCcEEEEEEEcChhccccce
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCF--------DASTMI----LPEDASCIITVPITLDIASNHG 248 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~m--------d~~~~~----~~~a~vtv~a~pv~~~~As~hG 248 (1084)
+.|++++++..+-.+. .+.++|+.||+++.+ ++..+. ..++ +|++..++ +..+.||
T Consensus 112 ~~Gt~~al~~a~~~~~---------~~~~lv~~~D~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~--~~~~~yg 179 (302)
T 2e3d_A 112 AKGLGHAVLCAHPVVG---------DEPVAVILPDVILDEYESDLSQDNLAEMIRRFDETGH-SQIMVEPV--ADVTAYG 179 (302)
T ss_dssp CCCHHHHHHHTHHHHC---------SSCEEEECTTEEECTTSSCTTTSTHHHHHHHHHHHCC-EEEEEEEC--SCGGGSE
T ss_pred cCCHHHHHHHHHHHcC---------CCcEEEEcCCccccCccccchHHHHHHHHHHHHhcCC-cEEEEEEc--cCCCCcc
Confidence 4578888765544331 247999999999864 444443 2345 66666665 6678899
Q ss_pred EEEEC----CCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHH
Q 001402 249 VIVAA----KDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWE 306 (1084)
Q Consensus 249 V~~~d----~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~ 306 (1084)
++..| +++. . .+|..|.+||..+. +...+..+|+|+|+.++++
T Consensus 180 ~v~~~~~~~~~g~---~---~~v~~~~ekp~~~~---------~~~~~~~~Giyi~~~~~l~ 226 (302)
T 2e3d_A 180 VVDCKGVELAPGE---S---VPMVGVVEKPKADV---------APSNLAIVGRYVLSADIWP 226 (302)
T ss_dssp EEECTTCCCCTTC---E---EEECEEEESCCTTT---------CSCSEEEEEEEEECTTHHH
T ss_pred EEEecccccCCCC---c---eeEEEEEECCCCCc---------cccceEEEEEEEECHHHHH
Confidence 99874 2220 1 15889999997532 2345789999999998663
No 46
>1fxo_A Glucose-1-phosphate thymidylyltransferase; rhamnose, nucleotidyltransferase, pyrophosphorylase, allostery; HET: TMP; 1.66A {Pseudomonas aeruginosa} SCOP: c.68.1.6 PDB: 1fzw_A 1g0r_A* 1g1l_A* 1g23_A* 1g2v_A* 1g3l_A* 1h5r_A* 1h5s_C* 1h5t_A* 1h5s_D* 1h5s_A* 1h5r_B* 1h5s_B* 1h5t_B* 1iim_A* 1iin_A* 3pkp_A* 3pkq_A* 1mp5_A* 1mp3_A* ...
Probab=96.32 E-value=0.0096 Score=65.89 Aligned_cols=97 Identities=16% Similarity=0.128 Sum_probs=66.8
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|++.+++..+-.+. .+.++|+.||+++ ..++..+. ..++++++++.+++- ...|||+..|++
T Consensus 85 ~~G~~~al~~a~~~i~---------~~~~~lv~gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~ 153 (293)
T 1fxo_A 85 PDGLAQAFLIGESFIG---------NDLSALVLGDNLYYGHDFHELLGSASQRQTGASVFAYHVLD--PERYGVVEFDQG 153 (293)
T ss_dssp CCCGGGHHHHTHHHHT---------TSEEEEEETTEEEECTTHHHHHHHHHTCCSSEEEEEEECSC--GGGSEEEEECTT
T ss_pred CCCHHHHHHHHHHHhC---------CCCEEEEECChhccCccHHHHHHHHHhcCCCcEEEEEECCC--cccCcEEEECCC
Confidence 4577877654433221 2356666699875 44555443 246778888887643 457999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+ +|..|.+||..+ ...++.+|+|+|+.++++.+
T Consensus 154 g---------~v~~~~ekp~~~-----------~s~~~~~Giy~~~~~~l~~~ 186 (293)
T 1fxo_A 154 G---------KAISLEEKPLEP-----------KSNYAVTGLYFYDQQVVDIA 186 (293)
T ss_dssp S---------CEEEEEESCSSC-----------SSSEEEEEEEEECTTHHHHH
T ss_pred C---------cEEEEEECCCCC-----------CCCeEEEEEEEEcHHHHHHH
Confidence 7 799999999643 22378999999999986544
No 47
>1lvw_A Glucose-1-phosphate thymidylyltransferase; protein nucleotide complex, nucleotide binding fold; HET: TYD; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.68.1.6
Probab=96.16 E-value=0.01 Score=65.77 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=65.8
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|++++++..+..+. +.+.++|. ||+++ ..++..+. ..++++++++.+++- ...|||+..|++
T Consensus 86 ~~G~~~al~~a~~~i~--------~~~~~lv~-gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~~g~v~~d~~ 154 (295)
T 1lvw_A 86 PRGIADAFIVGKDFIG--------DSKVALVL-GDNVFYGHRFSEILRRAASLEDGAVIFGYYVRD--PRPFGVVEFDSE 154 (295)
T ss_dssp CCCGGGHHHHTHHHHT--------TSCEEEEE-TTCCEECTTHHHHHHHHHTCCSSEEEEEEECSC--CTTSEEEEECTT
T ss_pred CCChHHHHHHHHHHhC--------CCcEEEEE-CCccccCcCHHHHHHHHHHcCCCcEEEEEECCC--cccCCEEEECCC
Confidence 4577887654433331 12345555 99875 44555443 245678888887643 347999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+ +|..|.+||..+ ...++.+|+|+|+.++++.+
T Consensus 155 g---------~v~~~~ekp~~~-----------~s~~~~~Giy~f~~~~l~~~ 187 (295)
T 1lvw_A 155 G---------RVISIEEKPSRP-----------KSNYVVPGLYFYDNQVVEIA 187 (295)
T ss_dssp S---------BEEEEEESCSSC-----------SCSEECCSEEEECTTHHHHH
T ss_pred C---------cEEEEEECCCCC-----------CCCEEEEEeEEEcHHHHHHH
Confidence 7 799999999643 12378999999999987554
No 48
>3brk_X Glucose-1-phosphate adenylyltransferase; ADP-glucose pyrophosphorylase, allostery, kinetics, structure-function relationships; 2.10A {Agrobacterium tumefaciens}
Probab=96.06 E-value=0.0062 Score=70.76 Aligned_cols=71 Identities=14% Similarity=0.033 Sum_probs=58.1
Q ss_pred ccccccccccccccceeeccCCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEecccc
Q 001402 386 DHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 386 ~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i 457 (1084)
+..+++.+.+ ....+.++.+..+|.|..++.|.+|+|+.+|.|++++.|.+|+|++++.||.+++|.+...
T Consensus 324 ~~~ig~~~~I-~~~~i~~~~ig~~~~I~~~~~i~~~~i~~~~~i~~~~~i~~~~ig~~~~i~~~~~i~~~~~ 394 (420)
T 3brk_X 324 SSVVSGDCII-SGAALNRSLLFTGVRANSYSRLENAVVLPSVKIGRHAQLSNVVIDHGVVIPEGLIVGEDPE 394 (420)
T ss_dssp SCEECSSCEE-ESCEEESCEECTTCEECTTCEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEESSCHH
T ss_pred CCEECCCCEE-cCCEEeCcEEcCCCEECCCCEEcceEEcCCCEECCCCEEeceEECCCCEECCCCEEeCCCC
Confidence 4556666666 3334455666678889999999999999999999999999999999999999999987653
No 49
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*
Probab=96.01 E-value=0.007 Score=64.84 Aligned_cols=40 Identities=13% Similarity=0.331 Sum_probs=26.8
Q ss_pred eccccCCceeCCCcEEEE---------cEECCCcEECCCCeE-eccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIV-VGTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iI-sg~~i~~ 459 (1084)
+++|+.+|+|+++++|.+ ++|++++.||.+|+| .++.|..
T Consensus 139 ~~~IG~~~~I~~~~~i~~~~~~~~~~~~~Ig~~~~IG~~~~I~~~~~Ig~ 188 (240)
T 3r8y_A 139 RATVGKNCHVGAGAVLAGVIEPPSAKPVIVEDDVVIGANVVVLEGVTVGK 188 (240)
T ss_dssp TCEECTTCEECTTCEECCCCSCTTSCCCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCcEECCCcEECCCccCCCCCCcEECCCCEECCCCEECCCcEECC
Confidence 566666666666666665 667777777777776 5666655
No 50
>1mc3_A Glucose-1-phosphate thymidylyltransferase; glucose-1-phosphate thymidylytransferase, RFFH; HET: TTP; 2.60A {Escherichia coli} SCOP: c.68.1.6
Probab=95.96 E-value=0.0089 Score=66.28 Aligned_cols=96 Identities=17% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCccc-ccCccccC----cCCCcEEEEEEEcChhccccceEEEECCC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLP-CFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKD 255 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~-~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~ 255 (1084)
+.|++++++..+..+. +.+.++|+ ||+++ ..++..+. ..+.++++++.+++- ...|||+..|++
T Consensus 86 ~~G~~~al~~a~~~i~--------~~~~~lv~-gD~~~~~~~l~~~l~~~~~~~~~~~v~~~~v~d--p~~yg~v~~d~~ 154 (296)
T 1mc3_A 86 PDGLAQAFIIGETFLN--------GEPSCLVL-GDNIFFGQGFSPKLRHVAARTEGATVFGYQVMD--PERFGVVEFDDN 154 (296)
T ss_dssp CCCSTHHHHHTHHHHT--------TSCEEEEE-TTEEEECSSCHHHHHHHTTCCSSEEEEEEECSC--CSSSBBCEEETT
T ss_pred CCCHHHHHHHHHHHhC--------CCCEEEEE-CCccccccCHHHHHHHHHHcCCCCEEEEEECCC--cccCCEEEECCC
Confidence 4578877654443321 12345555 99875 44555443 245778888887643 457999999987
Q ss_pred CCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHH
Q 001402 256 GILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 256 ~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
+ +|..|.+||..+ ...++.+|+|+|+.++++.
T Consensus 155 g---------~v~~~~ekp~~~-----------~s~~~~~Giy~~~~~~l~~ 186 (296)
T 1mc3_A 155 F---------RAISLEEKPKQP-----------KSNWAVTGLYFYDSKVVEY 186 (296)
T ss_dssp E---------EEEECCBSCSSC-----------SCSEEEEEEEECCTHHHHH
T ss_pred C---------cEEEEEECCCCC-----------CCCEEEEEEEEEcHHHHHH
Confidence 6 799999999653 2237899999999998654
No 51
>2cu2_A Putative mannose-1-phosphate guanylyl transferase; mannose-1-phosphate geranyltransferase, thermus thermophilus structural genomics; 2.20A {Thermus thermophilus} SCOP: b.81.4.1 c.68.1.20
Probab=95.83 E-value=0.0069 Score=68.48 Aligned_cols=112 Identities=13% Similarity=0.096 Sum_probs=70.1
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccccC------cccc---CcCCCcEEEEEEEcChhccccceEEEE
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPCFD------ASTM---ILPEDASCIITVPITLDIASNHGVIVA 252 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~md------~~~~---~~~~a~vtv~a~pv~~~~As~hGV~~~ 252 (1084)
.|+++++..... +... ...+.++|+.|||++.-. ...+ ...++.+|+...|... .+.||++..
T Consensus 82 ~gta~ai~~a~~-l~~~-----~~~~~~lvl~~D~~~~~~~~~~~~l~~~~~~~~~~~~vt~~i~p~~~--~t~yG~I~~ 153 (337)
T 2cu2_A 82 RDTAGAVLLGVA-EALK-----EGAERLLVLPADHYVGDDEAYREALATMLEAAEEGFVVALGLRPTRP--ETEYGYIRL 153 (337)
T ss_dssp CHHHHHHHHHHH-HHHH-----HTCSEEEEEESSCEESCHHHHHHHHHHHHHHCCTTCEEEEEECCSSC--CSSSCEEEE
T ss_pred CCcHHHHHHHHH-Hhcc-----CCCCEEEEEECCccCCCHHHHHHHHHHHHHHHHcCCeEEEeeccCCC--CCCceEEEE
Confidence 466776654444 3210 013589999999987531 2222 1236677777766654 367999998
Q ss_pred CCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 253 AKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 253 d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
|++.. . ..+|..|.|||..+.-++ . ...+ .+..+|+|+|+.+++.+.+.
T Consensus 154 ~~~~~-~----~~~V~~f~EKp~~~~a~~--~-~~~g-~~~n~Giy~f~~~~ll~~l~ 202 (337)
T 2cu2_A 154 GPREG-A----WYRGEGFVEKPSYAEALE--Y-IRKG-YVWNGGVFAFAPATMAELFR 202 (337)
T ss_dssp EEEET-T----EEEEEEEECCCCHHHHHH--H-HHTT-CEEEEEEEEECHHHHHHHHH
T ss_pred CCccc-c----cCeEEEEEeCCChHHHHH--H-hhcC-CEEEEEEEEEeHHHHHHHHH
Confidence 75400 0 117899999998653221 1 1134 68899999999998866655
No 52
>2ux8_A Glucose-1-phosphate uridylyltransferase; UGPG, GALU pyrophosphorylase, nucleotidyltransferase; HET: G1P; 2.65A {Sphingomonas elodea}
Probab=95.82 E-value=0.0023 Score=70.87 Aligned_cols=101 Identities=14% Similarity=0.070 Sum_probs=49.8
Q ss_pred CCCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcccc---cCccccC----cCCCcEEEEEEEcChhccccceEEEEC
Q 001402 181 PDGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVLPC---FDASTMI----LPEDASCIITVPITLDIASNHGVIVAA 253 (1084)
Q Consensus 181 ~~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I~~---md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d 253 (1084)
+.|++++++..+..+. .+.++|+.||+++. .++..+. ..++ +|+...+++.+..+.||++..|
T Consensus 116 ~~Gt~~al~~a~~~~~---------~~~~lv~~~D~~~~~~~~~l~~l~~~~~~~~~-~~i~~~~~~~~~~~~yg~v~~~ 185 (297)
T 2ux8_A 116 PMGLGHAVWCARDIVG---------DEPFAVLLPDDFMFGQPGCLKQMVDAYNKVGG-NLICAEEVPDDQTHRYGIITPG 185 (297)
T ss_dssp CCCHHHHHHTTHHHHC---------SSCEEEECTTEEEESSSCHHHHHHHHHHHHCS-EEEEEC-----------CCCCC
T ss_pred CCChHHHHHHHHHHcC---------CCcEEEEeCCeecCCChHHHHHHHHHHHhcCC-CEEEEEecCcccCCCCCeEEec
Confidence 4578887765443321 35799999999976 4455553 2344 5666677777778899998776
Q ss_pred C--CCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHH
Q 001402 254 K--DGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 254 ~--~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
+ ++ . .+|..|.+||..+. +...+..+|+|+|+.+.++.
T Consensus 186 ~~~~~----~---~~v~~~~ekp~~~~---------~~~~~~~~Giyi~~~~~l~~ 225 (297)
T 2ux8_A 186 TQDGV----L---TEVKGLVEKPAPGT---------APSNLSVIGRYILQPEVMRI 225 (297)
T ss_dssp CBCSS----E---EEC-----------------------CCCEEEEEEECTHHHHH
T ss_pred ccCCC----c---eeEEEEEECCCCCC---------CCccEEEEEEEEECHHHHHH
Confidence 3 21 0 15889999997531 22357789999999986643
No 53
>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A
Probab=95.63 E-value=0.023 Score=57.57 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=27.2
Q ss_pred CceeeeccEEE-----eccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 409 VSDIAASAVVL-----SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~-----~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|.|..++.|. +++|+.+|.|++++.|..|+|++++.||.+|+|. ++.|..
T Consensus 57 ~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 113 (173)
T 1xhd_A 57 RVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKKDALIGMGSIILDGAEIGE 113 (173)
T ss_dssp TCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECCCCEEcCCCEEcCCCEECC
Confidence 33444444444 4555666666666666666666666666665554 344433
No 54
>1yp2_A Glucose-1-phosphate adenylyltransferase small subunit; ADP-glucose synthase, ADP-glucose pyrophosphorylase, agpase B; HET: PMB; 2.11A {Solanum tuberosum} SCOP: b.81.1.4 c.68.1.6 PDB: 1yp3_A* 1yp4_A*
Probab=95.58 E-value=0.013 Score=68.70 Aligned_cols=69 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred ccccccccccccccceeeccCCCCceeeeccEEEeccccCC-------------------ceeCCCcEEEEcEECCCcEE
Q 001402 386 DHLSGDVSGLVGRRHLCSIPATTVSDIAASAVVLSSKIAHG-------------------VSIGEDSLIYDSNISSGIQI 446 (1084)
Q Consensus 386 ~~l~~d~~~l~~~~~~~~~~~~~g~~i~~~~~V~~SvL~~~-------------------v~V~~~s~Ve~S~l~~~v~I 446 (1084)
+..+++.+.+.. ..+.++.+..+|.|..++.|.+|++..+ |.||++++|.+|+|+++|.|
T Consensus 330 ~~~Ig~~~~I~~-~~i~~~~Ig~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~g~~~~~Ig~~~~i~~~~Ig~~~~I 408 (451)
T 1yp2_A 330 DSVIGEGCVIKN-CKIHHSVVGLRSCISEGAIIEDSLLMGADYYETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARI 408 (451)
T ss_dssp EEEECTTCEEEE-EEEESCEECTTCEECTTCEEESCEECCCSSCCCHHHHHHHHTTTCCCSEECTTCEEESEEECTTCEE
T ss_pred CeEECCCCEEcc-eEEeccEECCCCEECCCCEEcCceEECCCCcccccccccccccCceeEEECCCCEEeccEeCCCcEE
Confidence 345566665543 2334555566778888999999999888 99999999999999999999
Q ss_pred CCCCeEecc
Q 001402 447 GSLSIVVGT 455 (1084)
Q Consensus 447 G~~~iIsg~ 455 (1084)
|.||+|.+.
T Consensus 409 G~~~~i~~~ 417 (451)
T 1yp2_A 409 GDNVKIINK 417 (451)
T ss_dssp CTTCEECCS
T ss_pred CCCCEEeCC
Confidence 999999864
No 55
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}
Probab=95.36 E-value=0.022 Score=58.80 Aligned_cols=38 Identities=18% Similarity=0.398 Sum_probs=21.1
Q ss_pred cccCCceeCCCcEEE------EcEECCCcEECCCCeEeccccCC
Q 001402 422 KIAHGVSIGEDSLIY------DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve------~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|+.+|.|+++++|. +|+|++++.||.+|+|.++.|..
T Consensus 74 ~IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~ 117 (191)
T 3ixc_A 74 EVGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGN 117 (191)
T ss_dssp EECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECT
T ss_pred EECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECC
Confidence 555555555555555 55555555555555555555544
No 56
>3ixc_A Hexapeptide transferase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, GRAM-negative bacteria; 1.61A {Anaplasma phagocytophilum}
Probab=95.29 E-value=0.019 Score=59.14 Aligned_cols=54 Identities=22% Similarity=0.304 Sum_probs=44.3
Q ss_pred CCCCceeeeccEEE------eccccCCceeCCCcEEEEcEECCCcEECCCCeEec-cccCC
Q 001402 406 ATTVSDIAASAVVL------SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG-TNFPE 459 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~------~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg-~~i~~ 459 (1084)
+..+|.|..++.|. +++|+.+|.|+++++|..|+|++++.||.+|+|.. +.|..
T Consensus 75 IG~~~~I~~~~~I~~~~~~g~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig~ 135 (191)
T 3ixc_A 75 VGEGTNIQDNTVVHTDSMHGDTVIGKFVTIGHSCILHACTLGNNAFVGMGSIVMDRAVMEE 135 (191)
T ss_dssp ECTTCEECTTCEECC----CCEEECTTCEECTTCEECSCEECTTCEECTTCEECTTCEECT
T ss_pred ECCCCEECCCCEEeecCCcCCeEECCCCEECCCCEEECCEECCCCEECCCCEEeCCeEECC
Confidence 34455666666666 79999999999999999999999999999999974 66655
No 57
>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A
Probab=95.26 E-value=0.024 Score=58.04 Aligned_cols=40 Identities=23% Similarity=0.358 Sum_probs=23.5
Q ss_pred EeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccC
Q 001402 419 LSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 419 ~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
.+++|+.+|.|++++.|..++|++++.||.+|+|. ++.|.
T Consensus 82 ~~~~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~I~~~~~Ig 122 (187)
T 3r3r_A 82 NPLIIGEDVTVGHKVMLHGCTIGNRVLVGMGSIVLDGAIIE 122 (187)
T ss_dssp BCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEEC
T ss_pred CCeEECCCCEECCCCEEeCcEECCCCEECCCCEECCCCEEC
Confidence 34566666666666666666666666666666663 34443
No 58
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Probab=95.25 E-value=0.037 Score=56.07 Aligned_cols=51 Identities=18% Similarity=0.423 Sum_probs=32.2
Q ss_pred CceeeeccEEE-----eccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 409 VSDIAASAVVL-----SSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~-----~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|.|..++.|. +++|+.+|.|++++.|.+++|++++.||.+|+|. ++.|..
T Consensus 55 ~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~Ig~ 111 (173)
T 1v3w_A 55 YSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGNYVIIGISSVILDGAKIGD 111 (173)
T ss_dssp TCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECSSEEECTTCEECTTCEECS
T ss_pred CCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECCCCEECCCCEEeCCCEECC
Confidence 44444554444 3667777777777777777777777777777665 355544
No 59
>3kwd_A Carbon dioxide concentrating mechanism protein; LEFT-handed beta helix, gamma carbonic anhydrase, disulfide dependent activity; 1.10A {Thermosynechococcus elongatus} PDB: 3kwe_A 3kwc_A
Probab=95.20 E-value=0.035 Score=58.13 Aligned_cols=39 Identities=31% Similarity=0.273 Sum_probs=29.7
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeEeccccCC
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++|+.+|.|++++.|.. ++|++++.||.+|+|.++.|..
T Consensus 112 ~~IG~~v~Ig~~~~I~~~v~Ig~~v~IG~~a~I~~~~Ig~ 151 (213)
T 3kwd_A 112 VWIGDNVSITHMALIHGPAYIGDGCFIGFRSTVFNARVGA 151 (213)
T ss_dssp EEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred eEECCCcEECCCcEEcCCCEECCCCEECCCCEEeCcEECC
Confidence 67777777777777777 7778888888888877766655
No 60
>1xhd_A Putative acetyltransferase/acyltransferase; structural genomics, protein structure initiative, medwest C structural genomics, MCSG; 1.90A {Bacillus cereus} SCOP: b.81.1.5 PDB: 3vnp_A 2eg0_A
Probab=95.19 E-value=0.034 Score=56.27 Aligned_cols=52 Identities=13% Similarity=0.208 Sum_probs=42.5
Q ss_pred CCceeeeccEEEe----ccccCCceeCCCcEEE-----EcEECCCcEECCCCeEeccccCC
Q 001402 408 TVSDIAASAVVLS----SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 408 ~g~~i~~~~~V~~----SvL~~~v~V~~~s~Ve-----~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
.+|.|..++.|.. ++|+.+|.|+++++|. +++|++++.||.+|.|.++.|..
T Consensus 35 ~~~~I~~~~~i~~~~~~v~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~ 95 (173)
T 1xhd_A 35 EESSIWFNTVIRGDVSPTIIGDRVNVQDQCTLHQSPQYPLILEDDVTVGHQVILHSCHIKK 95 (173)
T ss_dssp TTCEECTTCEEEEEEEEEEECTTCEECTTCEEECCTTCCEEECTTCEECTTCEEESCEECT
T ss_pred CCcEEcCCcEEecCCCeEEECCCCEECCCCEEEeCCCCCeEECCCCEECCCCEEeCCEECC
Confidence 3455666666554 6899999999999998 89999999999999999888766
No 61
>3oam_A 3-deoxy-manno-octulosonate cytidylyltransferase; center for structural genomics of infectious diseases; 1.75A {Vibrio cholerae o1 biovar el tor} SCOP: c.68.1.13
Probab=95.12 E-value=0.019 Score=61.98 Aligned_cols=95 Identities=14% Similarity=-0.006 Sum_probs=64.9
Q ss_pred CCeEEEEcCCccc--ccCccccC----cCCCcEEEEEEEcC-hhccc--cceEEEECCCCCccccccccccceeEecCCh
Q 001402 206 EGGIFTMTGDVLP--CFDASTMI----LPEDASCIITVPIT-LDIAS--NHGVIVAAKDGILNENYALSLVDDLLQKPNV 276 (1084)
Q Consensus 206 p~gVlV~sgD~I~--~md~~~~~----~~~a~vtv~a~pv~-~~~As--~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~ 276 (1084)
.+.|+|+.||+-+ ..++..+. ..++++|+++.+++ ++... +-|+++.|++| ++..|-+||-+
T Consensus 91 ~d~vlv~~gD~Pli~~~~i~~l~~~~~~~~~~~~~~~~~v~~~~~~~~p~~g~vv~d~~g---------~v~~fsr~~i~ 161 (252)
T 3oam_A 91 DHIVVNVQGDEPLIPPAIIRQVADNLAACSAPMATLAVEIEDEAEVFNPNAVKVITDKSG---------YALYFSRATIP 161 (252)
T ss_dssp TSEEEECCTTCTTCCHHHHHHHHHHHHHSSCSEEEEEEEECCHHHHTCTTSCEEEECTTS---------BEEEEESSCSS
T ss_pred CCEEEEEeCCeeecCHHHHHHHHHHHHhcCCCEEEEeeecCCHHHhhCCCceEEEECCCC---------eEEEEeCCCCC
Confidence 5789999999832 33444442 35789999998875 33222 23999999988 79999999864
Q ss_pred hhhh---cccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 277 DELA---KNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 277 ~~m~---~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
++-. +... ..+...+..+|+|+|+.++++.+..
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~n~GiY~~~~~~l~~~~~ 197 (252)
T 3oam_A 162 WDRDNFAKADK-AIVQPLLRHIGIYAYRAGFINTYLD 197 (252)
T ss_dssp CCHHHHHSSSC-CCCSCEEEEEEEEEEETTHHHHHHH
T ss_pred CCCCccccccc-cccccceEEEEEEEcCHHHHHHHHc
Confidence 3210 0000 0133568899999999999988775
No 62
>3c8v_A Putative acetyltransferase; YP_390128.1, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; 2.28A {Desulfovibrio desulfuricans subsp}
Probab=95.04 E-value=0.02 Score=67.80 Aligned_cols=51 Identities=10% Similarity=0.147 Sum_probs=31.1
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+|.|..++.|.+++|+.+|.|+++++|.+|+|++++.||.+|+|.+++|..
T Consensus 297 ~~~I~~~a~I~~v~IG~~~~I~~~~~I~~~vIG~~~~Ig~~a~I~gv~IGd 347 (496)
T 3c8v_A 297 NVLVSQRAYLDNAWMGKGSNAQENCYIINSRLERNCVTAHGGKIINAHLGD 347 (496)
T ss_dssp TCEECTTCEEEEEEECTTCEECTTCEEEEEEEEESCEECTTCEEESEEEEE
T ss_pred CCEECCCcEEeceEecCCCEECCCceEeceEeCCCCEECCCcEEcCceECC
Confidence 344445555556666666666666666666666666666666666665544
No 63
>1tzf_A Glucose-1-phosphate cytidylyltransferase; nucleotidyltransferase, mixed alpha/beta fold; HET: C5G; 2.10A {Salmonella enterica subsp} SCOP: c.68.1.13 PDB: 1wvc_A*
Probab=94.92 E-value=0.016 Score=62.21 Aligned_cols=74 Identities=16% Similarity=0.259 Sum_probs=56.5
Q ss_pred CCeEEEEcCCcccccCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhc
Q 001402 206 EGGIFTMTGDVLPCFDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAK 281 (1084)
Q Consensus 206 p~gVlV~sgD~I~~md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~ 281 (1084)
.+.++|+.||+++..++..+. ..++++|+...+ ..+.||++.+| ++ +|..|.+||..+
T Consensus 122 ~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~t~~~~~----~~~~~g~v~~~-~g---------~v~~~~ekp~~~---- 183 (259)
T 1tzf_A 122 DEAFLFTYGDGVADLDIKATIDFHKAHGKKATLTATF----PPGRFGALDIQ-AG---------QVRSFQEKPKGD---- 183 (259)
T ss_dssp SSCEEEEETTEEECCCHHHHHHHHHHHCCSEEEEEEC----CCCCSEEEEEE-TT---------EEEEEEESCSCC----
T ss_pred CCcEEEEECCEecccCHHHHHHHHHHhCCeEEEEEec----CCCCccEEEEc-CC---------EEEEEEecCCCC----
Confidence 357999999999877776664 356777775443 35679999988 55 799999999652
Q ss_pred ccccCCCCcceeeeeeEEecHHHH
Q 001402 282 NHAILDDGRALLDTGIIAVRGKAW 305 (1084)
Q Consensus 282 ~~av~~~~~~l~s~Giy~f~~~~~ 305 (1084)
..++.+|+|+|+.+++
T Consensus 184 --------~~~~~~Giy~~~~~~l 199 (259)
T 1tzf_A 184 --------GAMINGGFFVLNPSVI 199 (259)
T ss_dssp --------SCCEECCCEEECGGGG
T ss_pred --------CceEEEEEEEeCHHHH
Confidence 2367899999999876
No 64
>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}
Probab=94.88 E-value=0.036 Score=56.71 Aligned_cols=32 Identities=25% Similarity=0.493 Sum_probs=20.5
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
+|+.+|.|++++.|..++|++++.||.+|+|.
T Consensus 89 ~Ig~~~~Ig~~~~i~~~~Ig~~~~Ig~~~~i~ 120 (189)
T 3r1w_A 89 IIGDDVTIGHQAMLHGCTIGNRVLIGMKSMIM 120 (189)
T ss_dssp EECSSEEECTTCEEESCEECSSEEECTTCEEC
T ss_pred EECCCCEECCCCEEeCcEECCCcEECCCCEEc
Confidence 66666666666666666666666666666653
No 65
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Probab=94.78 E-value=0.049 Score=58.54 Aligned_cols=47 Identities=15% Similarity=0.342 Sum_probs=25.5
Q ss_pred eeeeccEEEe-ccccCCceeCCCcEEEEcEECCCcEECCCCeEecccc
Q 001402 411 DIAASAVVLS-SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTNF 457 (1084)
Q Consensus 411 ~i~~~~~V~~-SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~i 457 (1084)
.|..++.|.. ++|+.+|.|+.+++|..++|++++.||.+|+|.++.|
T Consensus 148 ~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~~~~IgagsvV~~~~I 195 (247)
T 1qre_A 148 SLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGNNCVLEPRSAAIGVTI 195 (247)
T ss_dssp EECTTCEEEEEEEECTTCEECTTCEEEEEEECTTCEECTTCEEESCEE
T ss_pred EECCCCEEcCCcEECCCCEECCCCEEeceEECCCCEECCCCEECCeEe
Confidence 3444444444 5555666666666555555555666666655544433
No 66
>1v3w_A Ferripyochelin binding protein; beta-helix, carbonic anhydrase, structural genomics, riken S genomics/proteomics initiative, RSGI, lyase; 1.50A {Pyrococcus horikoshii} SCOP: b.81.1.5 PDB: 1v67_A 2fko_A
Probab=94.55 E-value=0.066 Score=54.12 Aligned_cols=51 Identities=18% Similarity=0.232 Sum_probs=41.7
Q ss_pred CceeeeccEEEe----ccccCCceeCCCcEEE-----EcEECCCcEECCCCeEeccccCC
Q 001402 409 VSDIAASAVVLS----SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~----SvL~~~v~V~~~s~Ve-----~S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
++.|..++.|.. ++|+.+|.|+++++|. +++|++++.||.+|.|.++.|..
T Consensus 34 ~~~I~~~~~i~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~~~I~~~~~i~~~~Ig~ 93 (173)
T 1v3w_A 34 KTSVWPSAVLRGDIEQIYVGKYSNVQDNVSIHTSHGYPTEIGEYVTIGHNAMVHGAKVGN 93 (173)
T ss_dssp TCEECTTCEEEEEEEEEEECTTCEECTTCEEECBTTBCEEECSSCEECTTCEEESCEECS
T ss_pred CCEECCCeEEecCCceEEECCCCEECCCcEEEecCCCCeEECCCCEECCCCEECCCEECC
Confidence 445555555554 7899999999999998 68999999999999999988865
No 67
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase; beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Probab=94.49 E-value=0.045 Score=62.78 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=36.6
Q ss_pred CCCCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 406 ATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 406 ~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
+..+|.|..++.|.+|+|+.++.|+.++.|++|+|++++.||.+|+|.+
T Consensus 283 Ig~~~~ig~~~~i~~~~i~~~~~i~~~~~i~~~~Ig~~~~Ig~~~~i~~ 331 (401)
T 2ggo_A 283 LVEKNKIGASVEVKESVIMEGSKIPHLSYVGDSVIAEDVNFGAGTLIAN 331 (401)
T ss_dssp ECSSCEEEETCEEESEEECTTCEEEESCEEESCEECTTCEECTTCEECC
T ss_pred ECCCCEECCCCEEecCEEcCCcEECCCceEcceEECCCcEECCCcEEcC
Confidence 3345566677777777888888888888888888888888888888763
No 68
>3r3r_A Ferripyochelin binding protein; structural genomics, csgid, center for structural genomics O infectious diseases, all beta protein; 1.20A {Salmonella enterica subsp} SCOP: b.81.1.0 PDB: 3tio_A 3tis_A
Probab=94.46 E-value=0.06 Score=54.95 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=47.0
Q ss_pred CceeeeccEEE----eccccCCceeCCCcEE------------EEcEECCCcEECCCCeEeccccCCCCCCCCCCCcceE
Q 001402 409 VSDIAASAVVL----SSKIAHGVSIGEDSLI------------YDSNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFM 472 (1084)
Q Consensus 409 g~~i~~~~~V~----~SvL~~~v~V~~~s~V------------e~S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~ 472 (1084)
+|.|..++.|. +.+|+.+|.|+++++| .+++|++++.||.+|+|.++.|..+ +.
T Consensus 39 ~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~----------~~ 108 (187)
T 3r3r_A 39 DVGIWPLVVIRGDVNYVAIGARTNIQDGSVLHVTHKSSSNPHGNPLIIGEDVTVGHKVMLHGCTIGNR----------VL 108 (187)
T ss_dssp TCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCBTTBC-CBCEEECSSCEECTTCEEESCEECSS----------EE
T ss_pred CCEECCCcEEEcCCccEEECCCCEECCCCEEecCCccccCCCCCCeEECCCCEECCCCEEeCcEECCC----------CE
Confidence 44455555554 3489999999999999 7899999999999999999988763 55
Q ss_pred eCCCcEe
Q 001402 473 LPDRHCL 479 (1084)
Q Consensus 473 iP~g~~i 479 (1084)
|-.++.|
T Consensus 109 Ig~~~~I 115 (187)
T 3r3r_A 109 VGMGSIV 115 (187)
T ss_dssp ECTTCEE
T ss_pred ECCCCEE
Confidence 5555544
No 69
>3r8y_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- acetyltransferase; structural genomics, csgid; 1.70A {Bacillus anthracis} PDB: 3cj8_A*
Probab=94.44 E-value=0.037 Score=59.11 Aligned_cols=35 Identities=14% Similarity=0.377 Sum_probs=19.3
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEec
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg 454 (1084)
+++|+.+|.|+.+++|. +|+|++++.||.+|+|.+
T Consensus 121 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~i~~ 156 (240)
T 3r8y_A 121 GAVIGEGSMIDMNAVLGGRATVGKNCHVGAGAVLAG 156 (240)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECC
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEECCCcEECC
Confidence 34444444444444443 566666666666666655
No 70
>1qre_A Carbonic anhydrase; beta-helix, lyase; 1.46A {Methanosarcina thermophila} SCOP: b.81.1.5 PDB: 1qq0_A 1qrf_A 1qrg_A 1qrm_A 1qrl_A 1thj_A 3otm_A 3ow5_A 3ou9_A 3otz_A 3oup_A
Probab=94.19 E-value=0.072 Score=57.25 Aligned_cols=40 Identities=18% Similarity=0.263 Sum_probs=32.8
Q ss_pred eccccCCceeCCCcEEEE-cEECCCcEECCCCeEeccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVVGTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIsg~~i~~ 459 (1084)
+++|+.+|.|++++.|.. ++|++++.||.+|+|.++.|..
T Consensus 140 ~v~IG~~v~Ig~~~~I~~~~~Ig~~v~IG~~a~I~~v~Ig~ 180 (247)
T 1qre_A 140 AVYIGNNVSLAHQSQVHGPAAVGDDTFIGMQAFVFKSKVGN 180 (247)
T ss_dssp SEEECTTCEECTTCEEEEEEEECTTCEECTTCEEEEEEECT
T ss_pred ceEECCCCEECCCCEEcCCcEECCCCEECCCCEEeceEECC
Confidence 378888888888888888 8888888888888887766655
No 71
>1hm9_A GLMU, UDP-N-acetylglucosamine-1-phosphate uridyltransfe; acetyltransferase, bifunctional, drug design; HET: ACO UD1; 1.75A {Streptococcus pneumoniae} SCOP: b.81.1.4 c.68.1.5 PDB: 1hm8_A* 1hm0_A* 4ac3_A* 4aaw_A* 1g97_A* 1g95_A*
Probab=94.16 E-value=0.035 Score=65.08 Aligned_cols=50 Identities=20% Similarity=0.414 Sum_probs=32.3
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|.|..++.|.+|+|+.+|.|+ ++.|++|+|++++.||.+|.|. +++|..
T Consensus 298 ~~~I~~~~~i~~~~ig~~~~i~-~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~ 348 (468)
T 1hm9_A 298 ETVLTNGTYVVDSTIGAGAVIT-NSMIEESSVADGVTVGPYAHIRPNSSLGA 348 (468)
T ss_dssp TCEECTTCEEESCEECTTCEEC-SCEEESCEECTTCEECSSCEECSSCEECT
T ss_pred CCEECCCCEEeccEEeCCcEEE-EEEEeccccCCCcEECCceEEecCcEECC
Confidence 4455556666666667777776 6677777777777777776666 555543
No 72
>3r1w_A Carbonic anhydrase; beta-helix, lyase; 1.73A {Unidentified}
Probab=94.08 E-value=0.094 Score=53.52 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=41.6
Q ss_pred CceeeeccEEE----eccccCCceeCCCcEEEEc------------EECCCcEECCCCeEeccccCCC
Q 001402 409 VSDIAASAVVL----SSKIAHGVSIGEDSLIYDS------------NISSGIQIGSLSIVVGTNFPEE 460 (1084)
Q Consensus 409 g~~i~~~~~V~----~SvL~~~v~V~~~s~Ve~S------------~l~~~v~IG~~~iIsg~~i~~~ 460 (1084)
+|.|..++.|. +.+|+.+|.|+++++|..+ +|++++.||.+|.|.++.|..+
T Consensus 43 ~~~I~~~~~i~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~~~~Ig~~~~Ig~~~~i~~~~Ig~~ 110 (189)
T 3r1w_A 43 DCSVWPLAVIRGDMHHIRIGARTSVQDGSVLHITHASDYNPGGYPLIIGDDVTIGHQAMLHGCTIGNR 110 (189)
T ss_dssp TCEECTTCEEEEEEEEEEECTTCEECTTCEEECBCCSSSSTTCBCEEECSSEEECTTCEEESCEECSS
T ss_pred CCEECCCCEEecCCCceEECCCCEECCCCEEecCCcccCCCCCCCeEECCCCEECCCCEEeCcEECCC
Confidence 44455555553 3489999999999999876 9999999999999999888663
No 73
>3k8d_A 3-deoxy-manno-octulosonate cytidylyltransferase; KDSB synthetase KDO complex, lipopolysaccharide biosynthesis magnesium, nucleotidyltransferase; HET: KDO CTP; 1.90A {Escherichia coli} SCOP: c.68.1.13 PDB: 3k8e_C 1vh1_A 3jtj_A*
Probab=94.08 E-value=0.052 Score=59.12 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=65.9
Q ss_pred CCCeEEEEcCCccc--ccCccccC----cCCCcEEEEEEEcC-hhccccceE--EEECCCCCccccccccccceeEecCC
Q 001402 205 NEGGIFTMTGDVLP--CFDASTMI----LPEDASCIITVPIT-LDIASNHGV--IVAAKDGILNENYALSLVDDLLQKPN 275 (1084)
Q Consensus 205 ~p~gVlV~sgD~I~--~md~~~~~----~~~a~vtv~a~pv~-~~~As~hGV--~~~d~~~~~~~~~~~~~v~~fleKPs 275 (1084)
+.+.|+|+.||.-. ..++..+. .+++++++++.|++ .+...+.++ +++|++| ++..|-+||-
T Consensus 106 ~~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~~~~~~v~d~~~~~~p~~vkVv~d~~g---------~~l~fsr~~i 176 (264)
T 3k8d_A 106 DDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEG---------YALYFSRATI 176 (264)
T ss_dssp TTCEEEEECTTCTTCCHHHHHHHHHHHHTSSCSEEEEEEECCSHHHHTCTTSCEEEECTTS---------BEEEEESSCC
T ss_pred CCCEEEEEcCCcccCCHHHHHHHHHHHhhcCCCEEEEEEEcCCHHHccCCCceEEEECCCC---------eEEEEecCCC
Confidence 45799999999832 34444442 46789999999985 566665554 3478887 7999999986
Q ss_pred h-hh--hhcccccCCCCcceeeeeeEEecHHHHHHHHHH
Q 001402 276 V-DE--LAKNHAILDDGRALLDTGIIAVRGKAWEELVML 311 (1084)
Q Consensus 276 ~-~~--m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~~ 311 (1084)
. +. ..... -..+...+..+|+|+|+.++++.+..+
T Consensus 177 p~~r~~~~~~~-~~~~~~~~~~~GiY~y~~~~l~~~~~~ 214 (264)
T 3k8d_A 177 PWDRDRFAEGL-ETVGDNFLRHLGIYGYRAGFIRRYVNW 214 (264)
T ss_dssp SCCHHHHHHCS-SCCCSCCEEECSEEEEEHHHHHHHHHS
T ss_pred CCCCccccccc-cccCCcceEEEEEEEECHHHHHHHHhC
Confidence 3 11 10000 001234688999999999999888763
No 74
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}
Probab=94.02 E-value=0.066 Score=57.69 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=10.6
Q ss_pred eccccCCceeCCCcEEEEc
Q 001402 420 SSKIAHGVSIGEDSLIYDS 438 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S 438 (1084)
+++|+.+|.|+++++|.++
T Consensus 126 ~~~IG~~~~Ig~~~~I~~~ 144 (252)
T 3jqy_B 126 NVTIGHDCMIARDVILRAS 144 (252)
T ss_dssp EEEECTTCEECSSEEEECS
T ss_pred CeEECCCCEEcCCcEEecC
Confidence 4555555555555555554
No 75
>2v0h_A Bifunctional protein GLMU; cell WALL, magnesium, cell shape, transferase, peptidoglycan synthesis, associative mechanism; 1.79A {Haemophilus influenzae} PDB: 2v0i_A* 2v0j_A* 2v0k_A* 2v0l_A* 2vd4_A* 2w0v_A* 2w0w_A* 3twd_A*
Probab=93.65 E-value=0.088 Score=61.35 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=28.2
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-cccc
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNF 457 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i 457 (1084)
+|.|..++.|.+++|+.+|.|+++++|++++|++++.||.+|.|. ++.+
T Consensus 289 ~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~~i 338 (456)
T 2v0h_A 289 RVKIGTGCVLKNVVIGNDVEIKPYSVLEDSIVGEKAAIGPFSRLRPGAEL 338 (456)
T ss_dssp TCEECTTCEEEEEEECTTCEECSSCEEEEEEECTTCEECSSEEECTTCEE
T ss_pred CCEECCCCEEEeEEEeCCCEEcCCeEEccCcCCCCcEECCccEECCCCEE
Confidence 445555555556666666666666666666666666666666555 3443
No 76
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Probab=93.62 E-value=0.11 Score=53.78 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=17.6
Q ss_pred eccccCCceeCCCcEE----EEcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLI----YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V----e~S~l~~~v~IG~~~iI 452 (1084)
+.+|+.+|.|+++++| .+++|++++.||.+|.|
T Consensus 70 ~v~IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I 106 (205)
T 3vbi_A 70 KVTIGSYSHIAAYTALYGGEVGIEMYDFANISSRTIV 106 (205)
T ss_dssp EEEECSSEEECTTCEEEEEEEEEEECTTCEECTTCEE
T ss_pred ceEECCCCEECCCeEEEcCCccEEECCCCEECCCcEE
Confidence 4455555555555555 22555555555555555
No 77
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A
Probab=93.42 E-value=0.13 Score=52.93 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=15.0
Q ss_pred cccCCceeCCCcEEE-EcEECCCcEECCCCeEec
Q 001402 422 KIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIsg 454 (1084)
.|+.+|.|+++++|+ +|+|++++.|+.+|+|.+
T Consensus 109 ~IG~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~ 142 (194)
T 3bfp_A 109 KIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAG 142 (194)
T ss_dssp EECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred EECCCCEECCCCEEcCCCEECCCCEECCCCEECC
Confidence 344444444444443 344444444444444443
No 78
>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A
Probab=93.30 E-value=0.073 Score=55.29 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=13.8
Q ss_pred CCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 425 HGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 425 ~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
..++||+++|| .+|+|.++++||+||+|
T Consensus 129 ~~v~IG~~v~IG~~~~I~~gv~IG~~~vI 157 (199)
T 3ftt_A 129 GPIHIGSNTWFGGHVAVLPGVTIGEGSVI 157 (199)
T ss_dssp CCEEECSSEEECTTCEECTTCEECTTCEE
T ss_pred CCeEEcCCcEEcCCCEECCCCEECCCCEE
Confidence 33444444444 34445555555555555
No 79
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*
Probab=93.06 E-value=0.12 Score=53.92 Aligned_cols=56 Identities=23% Similarity=0.359 Sum_probs=33.0
Q ss_pred ccCCceeCCCcEEE-EcEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcEeeeeecCCcceEEEEEe
Q 001402 423 IAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVPLVGCTERVLVYC 495 (1084)
Q Consensus 423 L~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~l~~~~~~v~~~~ 495 (1084)
+...++||+++||. +|+|.++|+||+||+|- |+.|.+ .||+++.+ .|...++++-.
T Consensus 128 ~~~~v~IGd~v~IG~~a~I~~gv~IG~~~vIgagsvV~~------------dvp~~~vv-----~G~PArvik~~ 185 (203)
T 1krr_A 128 YSFPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSIVTK------------DIPPNVVA-----AGVPCRVIREI 185 (203)
T ss_dssp EECCEEECTTCEECTTCEECTTCEECTTCEECTTCEECS------------CBCTTEEE-----ETTTTEEEEEC
T ss_pred eCCCcEECCCeEECCCCEEeCCeEECCCCEECCCCEECC------------CcCCCcEE-----EccCcEEeccC
Confidence 33456666666664 45667777777777774 444433 26777643 24455666654
No 80
>4fce_A Bifunctional protein GLMU; GLMU. csgid, niaid, structural genomics, national institute allergy and infectious diseases; HET: GP1; 1.96A {Yersinia pseudotuberculosis} PDB: 3fww_A 1hv9_A* 2oi5_A* 2oi6_A* 2oi7_A* 1fxj_A* 1fwy_A*
Probab=93.03 E-value=0.12 Score=60.21 Aligned_cols=52 Identities=15% Similarity=0.311 Sum_probs=33.9
Q ss_pred CCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 408 TVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 408 ~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.+|.|..++.|.+++|+.+|.|+++++|++++|++++.||.+|.|. ++.+..
T Consensus 291 ~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~~~Ig~~~~ig~~~~i~~~~~ig~ 343 (459)
T 4fce_A 291 DRVRIGTGCVLKNCVIGDDSEISPYTVLEDARLDANCTVGPFARLRPGAELAE 343 (459)
T ss_dssp TTCEECTTCEEESCEECTTCEECSSCEEESCEECTTCEECSSEEECTTCEECT
T ss_pred CCCEECCCCEEeccEECCCCEECCCcEEeCCEECCCCEECCccEECCCcEECC
Confidence 3455666666666777777777777777777777777777777665 455433
No 81
>3tqd_A 3-deoxy-manno-octulosonate cytidylyltransferase; cell envelope; 1.80A {Coxiella burnetii} SCOP: c.68.1.0
Probab=92.92 E-value=0.13 Score=55.62 Aligned_cols=96 Identities=17% Similarity=0.114 Sum_probs=62.6
Q ss_pred CCeEEEEcCCccc--ccCccccC-----cCCCcEEEEEEEc-ChhccccceE--EEECCCCCccccccccccceeEecCC
Q 001402 206 EGGIFTMTGDVLP--CFDASTMI-----LPEDASCIITVPI-TLDIASNHGV--IVAAKDGILNENYALSLVDDLLQKPN 275 (1084)
Q Consensus 206 p~gVlV~sgD~I~--~md~~~~~-----~~~a~vtv~a~pv-~~~~As~hGV--~~~d~~~~~~~~~~~~~v~~fleKPs 275 (1084)
.+.|+|+.||..+ ..++..+. .++++++.++.|+ +.++..+.++ +++|++| ++..|-+||-
T Consensus 98 ~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~a~l~~~v~~~~~~~~p~~vkvv~d~~g---------~~l~fsr~pi 168 (256)
T 3tqd_A 98 DEIIVCLQGDEPLIPPDAIRKLAEDLDEHDNVKVASLCTPITEVDELFNPHSTKVVLNRRN---------YALYFSHAPI 168 (256)
T ss_dssp TCEEEEECTTCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHTCTTSCEEEECTTS---------BEEEEESSCS
T ss_pred CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeeEcCCHHHhhCCCccEEEECCCC---------EEeEEecCCC
Confidence 5799999999843 23344432 2567888999998 6666665544 3678887 7999999986
Q ss_pred hh-h--hhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 276 VD-E--LAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 276 ~~-~--m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
.- . .........+...+...|+|+|+.++++.+..
T Consensus 169 p~~r~~~~~~~~~~~~~~~~~~~GiY~y~~~~l~~~~~ 206 (256)
T 3tqd_A 169 PWGRDTFSDKENLQLNGSHYRHVGIYAYRVGFLEEYLS 206 (256)
T ss_dssp SCCTTTTTCGGGCCCSSCCEEEEEEEEEEHHHHHHHHH
T ss_pred CCCCcccccccccccCCcceEEEEEEEcCHHHHHHHHh
Confidence 41 1 00000011122468899999999999988765
No 82
>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*
Probab=92.87 E-value=0.13 Score=52.79 Aligned_cols=14 Identities=21% Similarity=0.356 Sum_probs=7.7
Q ss_pred cccCCceeCCCcEE
Q 001402 422 KIAHGVSIGEDSLI 435 (1084)
Q Consensus 422 vL~~~v~V~~~s~V 435 (1084)
.|+.+|.|++++.|
T Consensus 98 ~IG~~~~Ig~~v~I 111 (188)
T 3srt_A 98 EIGDNVMLAPNVQI 111 (188)
T ss_dssp EECSSCEECTTCEE
T ss_pred EECCeeEECCCcEE
Confidence 45555555555555
No 83
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar, LEFT-handed beta helix, sugar N-AC transferase; HET: COA 0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A* 3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Probab=92.85 E-value=0.18 Score=52.25 Aligned_cols=54 Identities=19% Similarity=0.225 Sum_probs=37.9
Q ss_pred CCCCceeeeccEE----EeccccCCceeCCCcEE--------------------------EEcEECCCcEECCCCeEe-c
Q 001402 406 ATTVSDIAASAVV----LSSKIAHGVSIGEDSLI--------------------------YDSNISSGIQIGSLSIVV-G 454 (1084)
Q Consensus 406 ~~~g~~i~~~~~V----~~SvL~~~v~V~~~s~V--------------------------e~S~l~~~v~IG~~~iIs-g 454 (1084)
+..+|.|..++.| .+++|+.+|.|+++++| ..++|+++|.||.+|+|. +
T Consensus 73 IG~~~~I~~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~g 152 (205)
T 3vbi_A 73 IGSYSHIAAYTALYGGEVGIEMYDFANISSRTIVYAAIDDFSGNALMGPTIPNQYKNVKTGKVILKKHVIIGAHSIIFPN 152 (205)
T ss_dssp ECSSEEECTTCEEEEEEEEEEECTTCEECTTCEEESEECCCSSSSCCSTTSCGGGCCCEECCEEECTTCEECTTCEECSS
T ss_pred ECCCCEECCCeEEEcCCccEEECCCCEECCCcEEEeCCCCcccccccCcccccccceeccCCEEECCCCEECCCCEEcCC
Confidence 3345555555555 23888999999999988 457778888888888776 5
Q ss_pred cccCC
Q 001402 455 TNFPE 459 (1084)
Q Consensus 455 ~~i~~ 459 (1084)
+.|.+
T Consensus 153 v~Ig~ 157 (205)
T 3vbi_A 153 VVIGE 157 (205)
T ss_dssp CEECT
T ss_pred CEECC
Confidence 66554
No 84
>3st8_A Bifunctional protein GLMU; acetyltransferase, pyrophosphorylase, rossmann fold, LEFT-handed-beta-helix, cell shape; HET: COA GP1 UD1; 1.98A {Mycobacterium tuberculosis} PDB: 3spt_A* 3foq_A 3dk5_A 3d8v_A 3d98_A* 3dj4_A 2qkx_A*
Probab=92.65 E-value=0.18 Score=59.86 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=42.0
Q ss_pred CCceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 408 TVSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 408 ~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
.++.|...+.+.+|+|+.++.|+..++|.+|+|+.+|.||+|||+.+
T Consensus 357 ~~v~IG~~v~ik~s~Ig~gskI~~~~~i~d~~Ig~~v~IG~g~i~~n 403 (501)
T 3st8_A 357 ADGKLGAFVEVKNSTIGTGTKVPHLTYVGDADIGEYSNIGASSVFVN 403 (501)
T ss_dssp TTCEEEETEEEESCEECTTCEEEESCEEESEEECSSCEECTTCEEEC
T ss_pred cccccCCeEEEccceecCCcEEeccceecCceEcCCCEECCCEEEEc
Confidence 35677788889999999999999999999999999999999999865
No 85
>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A
Probab=92.62 E-value=0.15 Score=55.78 Aligned_cols=13 Identities=15% Similarity=0.314 Sum_probs=7.5
Q ss_pred EeCCCcEe--eeeec
Q 001402 472 MLPDRHCL--WEVPL 484 (1084)
Q Consensus 472 ~iP~g~~i--~~v~l 484 (1084)
.||++..+ +.+|.
T Consensus 228 ~Vp~~svvv~G~~P~ 242 (276)
T 3gos_A 228 RVPAGSVVVSGNLPS 242 (276)
T ss_dssp EECTTEEEEEEEEEC
T ss_pred ccCCCcEEECCCccC
Confidence 56666655 44554
No 86
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*
Probab=92.56 E-value=0.1 Score=53.94 Aligned_cols=15 Identities=40% Similarity=0.662 Sum_probs=6.6
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
|+|.++++||++|+|
T Consensus 145 ~~I~~gv~IG~~~vI 159 (195)
T 3nz2_A 145 VVINQGVTIGARSVV 159 (195)
T ss_dssp CEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEE
Confidence 334444444444444
No 87
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=92.54 E-value=0.18 Score=52.99 Aligned_cols=8 Identities=25% Similarity=0.210 Sum_probs=4.0
Q ss_pred CCcccCCC
Q 001402 508 DGTFCGKP 515 (1084)
Q Consensus 508 ~~t~~g~~ 515 (1084)
..++.|.|
T Consensus 205 ~~~~~G~P 212 (220)
T 4ea9_A 205 SVLAIGVP 212 (220)
T ss_dssp TCEEETTT
T ss_pred CcEEEEeC
Confidence 34455555
No 88
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A
Probab=92.43 E-value=0.2 Score=56.32 Aligned_cols=48 Identities=21% Similarity=0.284 Sum_probs=37.8
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEEcEECCCcEECCCCeEeccc
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVGTN 456 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg~~ 456 (1084)
++.|..++.|.+|++..+|+|+.+++|.+|+|++++.|+++++|.+-.
T Consensus 151 g~~I~~~a~I~~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~ 198 (334)
T 2pig_A 151 ILQIYDRATVNHSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDK 198 (334)
T ss_dssp CEEECTTCEEESCEEETTCEECTTCEEESEEECTTCEECTTCEEECCS
T ss_pred CeEECCCCEEeccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCce
Confidence 445667777888888888888888888888888888888888887654
No 89
>3ftt_A Putative acetyltransferase sacol2570; galactoside O-acetyltransferase, enzyme, structural genomics, acyltransferase; 1.60A {Staphylococcus aureus subsp} PDB: 3v4e_A* 4dcl_A 4egg_A
Probab=92.32 E-value=0.18 Score=52.32 Aligned_cols=38 Identities=29% Similarity=0.426 Sum_probs=25.8
Q ss_pred cccCCceeCCCcEEEEc-------------------EECCCcEECCCCeEe-ccccCC
Q 001402 422 KIAHGVSIGEDSLIYDS-------------------NISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S-------------------~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|+.+|.|++++.|.++ +|+++|.||.||+|. |+.|..
T Consensus 96 ~IG~~v~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 153 (199)
T 3ftt_A 96 TIGDNVFIGPNCGFYTATHPLNFHHRNEGFEKAGPIHIGSNTWFGGHVAVLPGVTIGE 153 (199)
T ss_dssp EECSSEEECTTCEEECEECCSSHHHHHTTEEEECCEEECSSEEECTTCEECTTCEECT
T ss_pred EECCCCEECCCCEEecCCCcCccccccccceecCCeEEcCCcEEcCCCEECCCCEECC
Confidence 77778888888877443 467777777777665 555544
No 90
>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*
Probab=92.29 E-value=0.23 Score=54.92 Aligned_cols=48 Identities=15% Similarity=0.252 Sum_probs=38.2
Q ss_pred ccccCCceeCCCcEEEE---------cEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcEe
Q 001402 421 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHCL 479 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~i 479 (1084)
++|+.+|.|++++.|.. ++|++++.||.||.| ++.|.. ++.|-.|.++
T Consensus 208 v~IGd~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-gVtIGd----------~~iIGAGSVV 264 (332)
T 3fsy_A 208 VVVGDGSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL-GISLGD----------DCVVEAGLYV 264 (332)
T ss_dssp CEECTTCEECTTCEECSBCC---CCBCEECTTCEECTTCEE-CSCBCS----------SCEECTTCEE
T ss_pred eEECCCCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE-eeEECC----------CCEECCCCEE
Confidence 67888888888888864 888999999999999 888866 3777777653
No 91
>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}
Probab=92.24 E-value=0.15 Score=56.67 Aligned_cols=21 Identities=33% Similarity=0.294 Sum_probs=10.0
Q ss_pred cEECCCcEECCCCeEe-ccccC
Q 001402 438 SNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
++|++++.||.+|+|. ++.|.
T Consensus 203 v~IGd~v~IG~~a~I~~gv~IG 224 (304)
T 3eg4_A 203 TIIEDNCFIGARSEVVEGCIVR 224 (304)
T ss_dssp CEECTTCEECTTCEECTTCEEC
T ss_pred eEEcCCCEECCCCEEcCCcEEC
Confidence 5555555555555332 34443
No 92
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=92.16 E-value=0.12 Score=58.95 Aligned_cols=34 Identities=18% Similarity=0.246 Sum_probs=20.0
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
+++|+++|.||++++|. +++|.++++||++|+|.
T Consensus 161 ~~~Ig~~v~IG~~~~I~~~~~I~~~~~IG~~v~I~ 195 (372)
T 3pmo_A 161 HCVIGARSVIGEGGWLAPRVTLYHDVTIGARVSIQ 195 (372)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTEEECTTCEEC
T ss_pred CCEECCCCEECCCcccCCCcEEEeeeEECceeecc
Confidence 45555666666666665 55555555555555554
No 93
>3bfp_A Acetyltransferase; LEFT-handed beta helix, COA binding protein, N-glycan biosynthesis, bacillosamine, structural genomics, MKBSGI; HET: FLC; 1.75A {Campylobacter jejuni} SCOP: b.81.1.8 PDB: 2vhe_A* 3bsw_A* 3bss_A* 3bsy_A* 2npo_A
Probab=92.14 E-value=0.16 Score=52.28 Aligned_cols=32 Identities=16% Similarity=0.049 Sum_probs=14.2
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iI 452 (1084)
++|+.+|.|++++.|.. ++|++++.||.+++|
T Consensus 126 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~i 158 (194)
T 3bfp_A 126 CVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCV 158 (194)
T ss_dssp CEECTTCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEECCCcEECCCCEEcCCCEE
Confidence 34444444444444443 444444444444443
No 94
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A
Probab=92.10 E-value=0.17 Score=51.99 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=11.8
Q ss_pred CceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 426 GVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 426 ~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
.++||+++||. +|+|.++++||+||+|
T Consensus 130 ~v~IGd~v~IG~~~~I~~gv~IG~~~vI 157 (185)
T 2p2o_A 130 PVVIGHNVWIGGRAVINPGVTIGDNAVI 157 (185)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEE
T ss_pred CeEEcCCeEECCCCEECCCCEECCCCEE
Confidence 33444444442 3344444555555444
No 95
>3nz2_A Hexapeptide-repeat containing-acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: ACO; 2.35A {Vibrio cholerae o1 biovar eltor} SCOP: b.81.1.0 PDB: 3ect_A*
Probab=92.08 E-value=0.22 Score=51.38 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=25.2
Q ss_pred cccCCceeCCCcEEEE-------------------cEECCCcEECCCCeEe-ccccCC
Q 001402 422 KIAHGVSIGEDSLIYD-------------------SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~-------------------S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|+.+|.|++++.|.. ++|+++|.||.||+|. |+.|..
T Consensus 98 ~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~ 155 (195)
T 3nz2_A 98 TIGDHVLIGPSTQFYTASHSLDYRRRQAWETICKPIVIEDDVWIGGNVVINQGVTIGA 155 (195)
T ss_dssp EECTTCEECTTCEEECEECCSSGGGTTTCCCEECCEEECTTCEECTTCEECTTCEECT
T ss_pred EECCCCEECCCCEEecCCCCcccccccccceecCCeEECCCCEEcCCCEECCCCEECC
Confidence 6777788888777765 3566666666666664 455544
No 96
>2pig_A Putative transferase; SCR6, NESG, YDCK, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.38A {Salmonella paratyphi} PDB: 2f9c_A
Probab=92.03 E-value=0.17 Score=57.01 Aligned_cols=52 Identities=13% Similarity=0.118 Sum_probs=40.7
Q ss_pred eccCCCCceeeeccEEEeccccCCceeCCCcEEEEcE-----ECCCcEECCCCeEec
Q 001402 403 SIPATTVSDIAASAVVLSSKIAHGVSIGEDSLIYDSN-----ISSGIQIGSLSIVVG 454 (1084)
Q Consensus 403 ~~~~~~g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~S~-----l~~~v~IG~~~iIsg 454 (1084)
++.+..+|.|..++.|-+|+|+.++.|+++++|..+. |.+++.|+.++.|.+
T Consensus 162 ~s~I~~g~~I~~~a~I~~svI~~~a~I~~~a~V~~~~~~~v~I~~~~~I~g~a~V~R 218 (334)
T 2pig_A 162 HSRIVHQVQLYGNATITHAFIEHRAEVFDFALIEGDKDNNVWICDCAKVYGHARVIA 218 (334)
T ss_dssp SCEEETTCEECTTCEEESEEECTTCEECTTCEEECCSSCCEEECTTCEECTTCEEEC
T ss_pred ccEEcCCCEEcCCeEEeCcEEcCCCEECCCcEECCceeccEEECCCcEEeeeEEEec
Confidence 3444456677777888888999999999999998887 888888888888754
No 97
>4ea9_A Perosamine N-acetyltransferase; beta helix, acetyl coenzyme A, GDP-perosa transferase; HET: JBT; 0.90A {Caulobacter vibrioides} PDB: 4ea8_A* 4ea7_A* 4eaa_A* 4eab_A*
Probab=91.80 E-value=0.18 Score=52.91 Aligned_cols=32 Identities=13% Similarity=0.223 Sum_probs=14.0
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iI 452 (1084)
++|+.+|.|++++.|.. ++|++++.||.+|+|
T Consensus 148 ~~Ig~~~~i~~~~~i~~~v~Ig~~~~Ig~~~~i 180 (220)
T 4ea9_A 148 CRLGAACHLGPASALAGGVSVGERAFLGVGARV 180 (220)
T ss_dssp CEECTTCEECTTCEECSSCEECTTCEECTTCEE
T ss_pred CEECCCCEECCCCEEcCCCEECCCCEECCCCEE
Confidence 34444444444444433 444444444444444
No 98
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*
Probab=91.60 E-value=0.13 Score=52.83 Aligned_cols=6 Identities=17% Similarity=0.551 Sum_probs=3.1
Q ss_pred eCCCcE
Q 001402 473 LPDRHC 478 (1084)
Q Consensus 473 iP~g~~ 478 (1084)
||+++.
T Consensus 171 vp~~~v 176 (190)
T 3hjj_A 171 VPNNVV 176 (190)
T ss_dssp BCTTEE
T ss_pred cCCCCE
Confidence 455553
No 99
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3
Probab=91.59 E-value=0.17 Score=51.90 Aligned_cols=27 Identities=33% Similarity=0.525 Sum_probs=13.1
Q ss_pred CceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 426 GVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 426 ~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
.++||+++||. +|+|.++|+||+||+|
T Consensus 128 ~v~IG~~v~Ig~~a~I~~gv~IG~~~vI 155 (182)
T 1ocx_A 128 PVTIGNNVWIGGRAVINPGVTIGDNVVV 155 (182)
T ss_dssp CEEECTTCEECTTCEECTTCEECTTCEE
T ss_pred CeEEeCCeEECCCCEECCCcEECCCCEE
Confidence 44444444442 3444555555555555
No 100
>3hjj_A Maltose O-acetyltransferase; LEFT-handed beta-helix, acyltransferase, struct genomics; 2.15A {Bacillus anthracis} SCOP: b.81.1.0 PDB: 3igj_A*
Probab=91.57 E-value=0.28 Score=50.37 Aligned_cols=48 Identities=15% Similarity=0.296 Sum_probs=31.8
Q ss_pred ccccCCceeCCCcEEEE-------------------cEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcE
Q 001402 421 SKIAHGVSIGEDSLIYD-------------------SNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-------------------S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
..|+.+|.|++++.|.+ ++|+++|.||.+|+|. |+.|.+ ++.|..|..
T Consensus 99 v~IG~~~~Ig~~~~I~~~~~~~~~~~~~~~~~~~~~v~IG~~v~IG~~~~I~~gv~IG~----------~~vIgagsv 166 (190)
T 3hjj_A 99 VRIGDHCMFAPGVHIYTATHPLHPVERNSGKEYGKPVKIGNNVWVGGGAIINPGVSIGD----------NAVIASGAV 166 (190)
T ss_dssp EEECTTCEECTTCEEECEECCSSHHHHTSSEEEECCEEECTTCEECTTCEECTTCEECT----------TCEECTTCE
T ss_pred eEECCceEEcCCcEEecCCccCchhhccccccccCCeEECCCCEECCCCEECCCCEECC----------CCEECCCCE
Confidence 35777888888888744 3677777777777776 566554 256666654
No 101
>2iu8_A LPXD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; UDP-3- O-acyl-glucosamine N-acyltransferase, lipid A biosynthesis; HET: PLM UD1; 2.2A {Chlamydia trachomatis} PDB: 2iu9_A* 2iua_A*
Probab=91.50 E-value=0.17 Score=57.83 Aligned_cols=9 Identities=0% Similarity=0.206 Sum_probs=4.2
Q ss_pred eEeCCCcEe
Q 001402 471 FMLPDRHCL 479 (1084)
Q Consensus 471 ~~iP~g~~i 479 (1084)
+.|.++++|
T Consensus 197 ~~I~~~~~I 205 (374)
T 2iu8_A 197 VIIQPGAVI 205 (374)
T ss_dssp CEECTTCEE
T ss_pred CEECCCCEE
Confidence 444444444
No 102
>2p2o_A Maltose transacetylase; GK1921, GKA001001921.1, geobacillus kaustophilus structural genomics, PSI; 1.74A {Geobacillus kaustophilus} PDB: 2ic7_A
Probab=91.44 E-value=0.26 Score=50.57 Aligned_cols=39 Identities=23% Similarity=0.392 Sum_probs=25.0
Q ss_pred ccccCCceeCCCcEEE-------------------EcEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-------------------~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
..|+.+|.|++++.|. .++|+++|.||.||+|. ++.|..
T Consensus 95 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~~~I~~gv~IG~ 153 (185)
T 2p2o_A 95 VRIGDHCFIGPGVHIYTATHPLDPHERNSGLEYGKPVVIGHNVWIGGRAVINPGVTIGD 153 (185)
T ss_dssp EEECTTCEECTTCEEECEECCSSHHHHHTCCBEECCEEECSSCEECTTCEECTTCEECT
T ss_pred eEECCCcEEeCCCEEEcCCCcCChhhcccCccccCCeEEcCCeEECCCCEECCCCEECC
Confidence 4666777777777774 35666666677666666 555544
No 103
>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}
Probab=91.33 E-value=0.26 Score=54.91 Aligned_cols=12 Identities=17% Similarity=0.426 Sum_probs=6.5
Q ss_pred EeCCCcEe--eeee
Q 001402 472 MLPDRHCL--WEVP 483 (1084)
Q Consensus 472 ~iP~g~~i--~~v~ 483 (1084)
.||+|..+ +.+|
T Consensus 269 ~Vp~gsvVvaGsvP 282 (316)
T 3tk8_A 269 RIPAGSVVVAGNLP 282 (316)
T ss_dssp EECTTEEEEEEEEE
T ss_pred EeCCCCEEECCCCc
Confidence 56666654 3345
No 104
>3gos_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransfera acyltransferase; 1.80A {Yersinia pestis} SCOP: b.81.1.2 PDB: 1kgq_A* 1kgt_A* 2tdt_A* 3tdt_A* 3bxy_A 1tdt_A
Probab=91.26 E-value=0.2 Score=54.78 Aligned_cols=10 Identities=40% Similarity=0.737 Sum_probs=4.1
Q ss_pred cccHHHHhcc
Q 001402 582 RVSLEELHRS 591 (1084)
Q Consensus 582 rlS~~Ei~~~ 591 (1084)
+.+++|+++.
T Consensus 265 ~~~~~~~lr~ 274 (276)
T 3gos_A 265 KVGINELLRT 274 (276)
T ss_dssp --CHHHHHSC
T ss_pred hccHHHHHhh
Confidence 4455555543
No 105
>3fsy_A Tetrahydrodipicolinate N-succinyltransferase; beta helix, L beta H domain, acyltransferase; HET: SCA; 1.97A {Mycobacterium tuberculosis} PDB: 3fsx_A*
Probab=91.21 E-value=0.29 Score=54.09 Aligned_cols=45 Identities=16% Similarity=0.215 Sum_probs=35.0
Q ss_pred CceeeeccEEEe---------ccccCCceeCCCcEEEEcEECCCcEECCCCeEec
Q 001402 409 VSDIAASAVVLS---------SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 409 g~~i~~~~~V~~---------SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIsg 454 (1084)
+|.|..++.|.. .+|+.+|.||++++| .+.|++++.||.+++|+.
T Consensus 213 ~v~IgpGa~IgG~~~~~~~~~V~IGDnv~IGanAtI-gVtIGd~~iIGAGSVVtk 266 (332)
T 3fsy_A 213 GSDVGGGASIMGTLSGGGTHVISIGKRCLLGANSGL-GISLGDDCVVEAGLYVTA 266 (332)
T ss_dssp TCEECTTCEECSBCC---CCBCEECTTCEECTTCEE-CSCBCSSCEECTTCEECT
T ss_pred CCEECCCCEEcCCCCCCCccceEECCCCEECCCCEE-eeEECCCCEECCCCEECC
Confidence 445555555543 789999999999999 888888888888888864
No 106
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Probab=91.15 E-value=0.53 Score=49.17 Aligned_cols=19 Identities=11% Similarity=0.129 Sum_probs=11.7
Q ss_pred eccccCCceeCCCcEEEEc
Q 001402 420 SSKIAHGVSIGEDSLIYDS 438 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~S 438 (1084)
+++|+.+|.|++++.|..+
T Consensus 100 ~i~IG~~~~Ig~~~~I~~~ 118 (215)
T 2wlg_A 100 KISIGKDCMLAHGYEIRNT 118 (215)
T ss_dssp EEEECTTCEECTTEEEESC
T ss_pred CEEECCCCEEcCCEEEECC
Confidence 4556666666666666653
No 107
>3tk8_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid; 1.80A {Burkholderia pseudomallei}
Probab=91.10 E-value=0.21 Score=55.69 Aligned_cols=15 Identities=33% Similarity=0.224 Sum_probs=6.7
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
++|+++|.||.+|+|
T Consensus 219 v~IGd~v~IG~~a~I 233 (316)
T 3tk8_A 219 VIIEDNCFIGARSEV 233 (316)
T ss_dssp CEECTTCEECTTCEE
T ss_pred cEECCCCEECCCCEE
Confidence 344444444444443
No 108
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=91.02 E-value=0.24 Score=53.87 Aligned_cols=33 Identities=12% Similarity=0.305 Sum_probs=14.6
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
+++|+.+|.|+++++|. ++.|++++.|+.+|.|
T Consensus 31 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~I 64 (270)
T 1j2z_A 31 GVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVL 64 (270)
T ss_dssp TCEECTTCEECTTCEECSEEEECTTCEECTTCEE
T ss_pred CCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEE
Confidence 33444444444444444 4444444444444444
No 109
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=90.91 E-value=0.19 Score=57.39 Aligned_cols=40 Identities=20% Similarity=0.189 Sum_probs=27.8
Q ss_pred eccccCCceeCCCcEE-EEcEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++|+++|+|+++++| .+|+|++++.||++|.|. ++.|..
T Consensus 143 ~~~I~~~v~IG~~~~I~~~~~Ig~~v~IG~~~~I~~~~~I~~ 184 (372)
T 3pmo_A 143 YAVIESGARIGAGVSIGAHCVIGARSVIGEGGWLAPRVTLYH 184 (372)
T ss_dssp TCEECTTCEECTTCEECTTCEECTTCEECTTCEECTTCEECT
T ss_pred CCEECCCCEECCCCEECCCCEECCCCEECCCcccCCCcEEEe
Confidence 4556667777777777 577777788888888776 555533
No 110
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}
Probab=90.84 E-value=0.34 Score=53.17 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=24.8
Q ss_pred ccccCCceeCCCcEEEE---------cEECCCcEECCCCeEec-cccCC
Q 001402 421 SKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVG-TNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iIsg-~~i~~ 459 (1084)
++|+.+|.|+.++.|.. ++|+++|.||.||+|.+ +.|..
T Consensus 191 ~~IGd~v~I~~gvtIg~~~~~~~~r~~~IGd~v~IGaga~Il~gv~IG~ 239 (287)
T 3mc4_A 191 AVVEDNVSILHGVTLGGTGKSSGDRHPKIRQGVLIGAGAKILGNIQVGQ 239 (287)
T ss_dssp CEECSSCEEETTCEEEC-----CCCSCEECTTCEECTTCEEESSCEECT
T ss_pred eEECCCCEEcCCCEEcCCcccCCCcCCEECCCCEECCCCEECCCcEECC
Confidence 45555666666666655 47777777777777763 55544
No 111
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3
Probab=90.82 E-value=0.2 Score=52.40 Aligned_cols=48 Identities=21% Similarity=0.295 Sum_probs=25.7
Q ss_pred cCCceeCCCcEEE-EcEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcEeeeee
Q 001402 424 AHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 483 (1084)
Q Consensus 424 ~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~ 483 (1084)
..+|+||++++|. +|+|.++++||++|+|- |+.|.+ .||++..+...|
T Consensus 109 ~g~v~IG~~v~IG~~a~I~~gv~IG~~~iIgagsvV~~------------dVp~~~vv~G~P 158 (212)
T 3eev_A 109 SGDTIIGHDVWIGTEAMIMPGVKIGHGAIIASRSVVTK------------DVAPYEVVGSNP 158 (212)
T ss_dssp CCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS------------CBCTTEEEETTT
T ss_pred CCCeEECCCCEECCCCEEcCCCEECCCCEECCCCEEcc------------ccCCCcEEEecC
Confidence 3344555555552 44566666666666665 344433 267777543333
No 112
>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}
Probab=90.80 E-value=0.38 Score=49.44 Aligned_cols=36 Identities=11% Similarity=0.218 Sum_probs=20.0
Q ss_pred cEECCCcEECCCCeEe-ccccCCCCCCCCCCCcceEeCCCcEeeeee
Q 001402 438 SNISSGIQIGSLSIVV-GTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 483 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs-g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~ 483 (1084)
|+|+++++||+||+|- ++.|.+ +..|||++.+.-.|
T Consensus 115 ~~I~~gv~IG~~~~IgagsvV~~----------~~~Ip~~svv~G~p 151 (194)
T 3tv0_A 115 AYVGRNVILTSGCIIGACCNLNT----------FEVIPENTVIYGAD 151 (194)
T ss_dssp CEECTTEEECSSCEECTTCEECC----------CEEECTTEEEESTT
T ss_pred eeECCeEEECCCCEECCCCEECC----------CcEECCCCEEECCC
Confidence 4445555555555553 344433 47788887654443
No 113
>3eg4_A 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N- succinyltransferase; ssgcid, beta helix, acyltransferase, amino-acid biosynthesis, cytoplasm; 1.87A {Brucella suis}
Probab=90.39 E-value=0.27 Score=54.51 Aligned_cols=45 Identities=22% Similarity=0.313 Sum_probs=29.7
Q ss_pred CceeeeccEEEeccccCCceeCCCcEEEE-cEECCCcEECCCCeEe
Q 001402 409 VSDIAASAVVLSSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 409 g~~i~~~~~V~~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIs 453 (1084)
++.|..++.|..+++.+++.||++++|.. ++|++++.||++|.|.
T Consensus 141 ~v~Ig~g~~I~~~~I~~~~~IG~~~~I~~~~~Ig~~~~IG~~v~I~ 186 (304)
T 3eg4_A 141 SAYIAPNAILMPSFVNLGAYVDKGAMIDTWATVGSCAQIGKNVHLS 186 (304)
T ss_dssp TCEECTTCEECSEEECTTCEECTTCEECTTEEECTTCEECTTCEEC
T ss_pred CcEECCCCEEeCCEECCCCEECCCcEEcCCcEECCCCccCCCcEEC
Confidence 34566666666667777777777777776 5555556666666554
No 114
>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A
Probab=90.28 E-value=0.27 Score=51.80 Aligned_cols=28 Identities=36% Similarity=0.611 Sum_probs=14.0
Q ss_pred CceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 426 GVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 426 ~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
+|.||++++|. +|+|+++++||++|+|-
T Consensus 119 ~v~IG~~v~IG~~a~I~~gv~IG~gavIg 147 (220)
T 4hur_A 119 DIEIGNDVWIGRDVTIMPGVKIGDGAIIA 147 (220)
T ss_dssp CEEECSSCEECTTCEECTTCEECTTCEEC
T ss_pred CeEECCCcEECCCCEEeCCCEECCCCEEc
Confidence 34444444442 34445566666666654
No 115
>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A
Probab=90.27 E-value=0.46 Score=52.92 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=35.7
Q ss_pred eccccCCceeCCCcEEEE---------cEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcE
Q 001402 420 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
.++|+.+|.|++++.|.. ++|+++|.||.||+| ++.|..+ +.|-.|.+
T Consensus 230 gv~IGdnv~IgpGa~IgG~~~~~~~~~V~IGdnv~IGAnAtI-GVtIGd~----------~iIGAGSV 286 (347)
T 3r5d_A 230 GVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGI-GIPLGDR----------NIVEAGLY 286 (347)
T ss_dssp TCEECTTEEECTTCEECC------CCCCEECTTCEECTTCEE-CSCBCTT----------CEECTTCE
T ss_pred eEEECCCCEECCCCEEccccCCCCccceEECCCCEECCCCEE-eeEECCC----------CEECCCCE
Confidence 367888888888888764 688888888888888 7777653 66666654
No 116
>3r5d_A Tetrahydrodipicolinate N-succinyletransferase; 1.80A {Pseudomonas aeruginosa} PDB: 3r5b_A* 3r5c_A* 3r5a_A
Probab=90.20 E-value=0.27 Score=54.69 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=28.4
Q ss_pred CceeeeccEEEe-ccccCCceeCCCcEEE-----EcEECCCcEECCCCeEec
Q 001402 409 VSDIAASAVVLS-SKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVVG 454 (1084)
Q Consensus 409 g~~i~~~~~V~~-SvL~~~v~V~~~s~Ve-----~S~l~~~v~IG~~~iIsg 454 (1084)
++.|..|+.|.. +++..++.|++++.|. .++|++++.||.+|.|.+
T Consensus 196 GA~IGeGv~Igp~a~Vn~na~IGdg~iI~~~a~igv~IGdnv~IgpGa~IgG 247 (347)
T 3r5d_A 196 GAYIGEGTTVMHEGFVNFNAGTEGPGMIEGRVSAGVFVGKGSDLGGGCSTMG 247 (347)
T ss_dssp TEEECTTEEECTTCEECTTEEESSSEEECSEECTTCEECTTEEECTTCEECC
T ss_pred CCEECCCCEECCCCEECCCCEECCCcEEcCCceEeEEECCCCEECCCCEEcc
Confidence 444555544442 4555566666665553 277888888888888866
No 117
>3jqy_B NEUO, polysialic acid O-acetyltransferase; LEFT-handed beta-helix polysia; HET: PEG; 1.70A {Escherichia coli}
Probab=90.18 E-value=0.47 Score=50.94 Aligned_cols=36 Identities=17% Similarity=0.175 Sum_probs=33.5
Q ss_pred eccccCCceeCCCcEEE----EcEECCCcEECCCCeEecc
Q 001402 420 SSKIAHGVSIGEDSLIY----DSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve----~S~l~~~v~IG~~~iIsg~ 455 (1084)
+.+|+.+|.|++++.|. +++|+++|.||.+|+|.+.
T Consensus 105 ~v~IG~~~~Ig~~~~I~~~~~~~~IG~~~~Ig~~~~I~~~ 144 (252)
T 3jqy_B 105 KVIIGRRTTIGAGFEVVTDKCNVTIGHDCMIARDVILRAS 144 (252)
T ss_dssp EEEECTTCEECTTCEEECSSSEEEECTTCEECSSEEEECS
T ss_pred EEEECCCCEECCCcEEEeCCCCeEECCCCEEcCCcEEecC
Confidence 67899999999999999 9999999999999999874
No 118
>3mqg_A Lipopolysaccharides biosynthesis acetyltransferas; beta helix, acetyl transferase, transferase; HET: ACO U5P UDP PE4; 1.43A {Bordetella petrii} PDB: 3mqh_A*
Probab=89.95 E-value=0.36 Score=49.37 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.7
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
++|++++.||.+|+|
T Consensus 103 ~~Ig~~v~IG~~~~I 117 (192)
T 3mqg_A 103 TIVRQGATLGANCTV 117 (192)
T ss_dssp EEECTTCEECTTCEE
T ss_pred cEECCCcEECCCCEE
Confidence 344444444444444
No 119
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=89.67 E-value=0.43 Score=53.77 Aligned_cols=42 Identities=14% Similarity=0.234 Sum_probs=25.5
Q ss_pred eeeccEE-EeccccCCceeCCCcEEE--------------------EcEECCCcEECCCCeEe
Q 001402 412 IAASAVV-LSSKIAHGVSIGEDSLIY--------------------DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 412 i~~~~~V-~~SvL~~~v~V~~~s~Ve--------------------~S~l~~~v~IG~~~iIs 453 (1084)
|..++.| -+++|+.+|.|+++++|. .++|+++|.||.+|.|.
T Consensus 154 I~~~~~I~~~~~IG~~~~I~~g~~I~~~~fg~~~~~~~~~~i~~~g~v~IGd~v~Ig~~~~I~ 216 (341)
T 3eh0_A 154 LWANVTIYHEIQIGQNCLIQSGTVVGADGFGYANDRGNWVKIPQIGRVIIGDRVEIGACTTID 216 (341)
T ss_dssp ECSSCEECTTCEECSSCEECTTCEEEECCSCEEEETTEEEECCCCCCEEECSSCEECTTCEEE
T ss_pred ECCCcEECCCCEECCccEEcCCcEECCccccccccCCccccccccCcEEECCCcEECCccEee
Confidence 3334334 356666677777777663 35666777777777664
No 120
>1krr_A Galactoside O-acetyltransferase; LEFT-handed parallel beta helix; HET: ACO; 2.50A {Escherichia coli} SCOP: b.81.1.3 PDB: 1kqa_A* 1kru_A* 1krv_A*
Probab=89.65 E-value=0.51 Score=49.20 Aligned_cols=39 Identities=21% Similarity=0.305 Sum_probs=24.7
Q ss_pred ccccCCceeCCCcEEEE-------------------cEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLIYD-------------------SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-------------------S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
..|+.+|.|++++.|.. ++|+++|.||.||+|. |+.|..
T Consensus 96 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IGd~v~IG~~a~I~~gv~IG~ 154 (203)
T 1krr_A 96 VTIGDNVLIAPNVTLSVTGHPVHHELRKNGEMYSFPITIGNNVWIGSHVVINPGVTIGD 154 (203)
T ss_dssp EEECSSCEECSSCEEESEECCSSTTTCTTCCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred eEECCCCEECCCCEEecCCcccchhhcccCceeCCCcEECCCeEECCCCEEeCCeEECC
Confidence 46778888888887752 4566666666666665 444433
No 121
>1ocx_A Maltose O-acetyltransferase; LEFT-handed parallel beta-helix; 2.15A {Escherichia coli} SCOP: b.81.1.3
Probab=89.51 E-value=0.59 Score=47.71 Aligned_cols=39 Identities=18% Similarity=0.382 Sum_probs=25.5
Q ss_pred ccccCCceeCCCcEEE-------------------EcEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLIY-------------------DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-------------------~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
..|+.+|.|++++.|. .++|+++|.||.+|+|. ++.|..
T Consensus 93 i~IG~~v~Ig~~v~I~~~~h~~~~~~~~~~~~~~~~v~IG~~v~Ig~~a~I~~gv~IG~ 151 (182)
T 1ocx_A 93 IRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGD 151 (182)
T ss_dssp EEECTTCEECTTCEEECEECCSSHHHHTTTCBEECCEEECTTCEECTTCEECTTCEECT
T ss_pred eEEcCCcEEeCCcEEEeCCCccChhhcccCccccCCeEEeCCeEECCCCEECCCcEECC
Confidence 4677777777777774 35666777777777665 455544
No 122
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=89.18 E-value=0.33 Score=54.67 Aligned_cols=33 Identities=27% Similarity=0.290 Sum_probs=14.4
Q ss_pred eccccCCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
++.|+.+|.|++++.| ++|+|++++.|+.+++|
T Consensus 145 ~~~IG~~~~I~~~~~I~~~~~IG~~~~I~~g~~I 178 (341)
T 3eh0_A 145 NSKIGAGSRLWANVTIYHEIQIGQNCLIQSGTVV 178 (341)
T ss_dssp TCEECTTCEECSSCEECTTCEECSSCEECTTCEE
T ss_pred CCEECCCcEECCCcEECCCCEECCccEEcCCcEE
Confidence 3334444444444444 34444444444444444
No 123
>1jv1_A Glcnac1P uridyltransferase isoform 1: AGX1; nucleotidyltransferase, alternative splicing; HET: UD1; 1.90A {Homo sapiens} SCOP: c.68.1.5 PDB: 1jv3_A* 1jvg_A* 1jvd_A* 1vm8_A*
Probab=88.86 E-value=0.68 Score=54.89 Aligned_cols=136 Identities=16% Similarity=0.088 Sum_probs=81.5
Q ss_pred cCCCCCCCceeeeccCCcCCCCCCChhHHHHHHHH--HhhhhhhhcCCCCeEEEEcCCcc-cccCccccC----cCCCcE
Q 001402 160 VPWANPMGKVFLPLPYLAADDPDGPVPLLFDHILA--ISSCARQALKNEGGIFTMTGDVL-PCFDASTMI----LPEDAS 232 (1084)
Q Consensus 160 ~P~~s~~GK~ft~lP~~~~~~~~g~~~~l~e~~l~--i~~~~~~~~~~p~gVlV~sgD~I-~~md~~~~~----~~~a~v 232 (1084)
+|..+.-||+..+=|......|.|+.. +|..+.. +..... . ...++++|+++|.+ -.++...+. ..++++
T Consensus 199 ~P~i~~~g~~~l~~~~~~e~~P~GtGG-~~~~L~~sg~L~~l~-~-~g~e~~~V~n~Dn~L~~~~d~~~lg~~~~~~~~~ 275 (505)
T 1jv1_A 199 LPAMSFDGKIILEEKNKVSMAPDGNGG-LYRALAAQNIVEDME-Q-RGIWSIHVYCVDNILVKVADPRFIGFCIQKGADC 275 (505)
T ss_dssp EECEETTSCBCEEETTEECEEECCGGG-HHHHHHHTTHHHHHH-H-TTCCEEEEEETTBTTCCTTCHHHHHHHHHTTCSE
T ss_pred eEEEcCCCcccccCCcccccCCCCchH-HHHHHHHcCcHHHHH-h-cCCCEEEEEECCccccccchHHHHHHHHHcCCCE
Confidence 677666677555333221113456666 3433321 111010 0 02469999999996 656666553 688999
Q ss_pred EEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCC---cceeeeeeEEecHHHHHHHH
Q 001402 233 CIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDG---RALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 233 tv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~---~~l~s~Giy~f~~~~~~~ll 309 (1084)
|+.+++-. .....+||++.++.. + +|.+|-|||.... . ....++ ..+..+|+|+|+.+++.++.
T Consensus 276 ~~~v~~k~-~~~e~~Gvl~~~dg~-----~---~vvEy~E~p~~~~-~---~~~~~g~~~~~~~N~~~~~f~l~~L~~i~ 342 (505)
T 1jv1_A 276 GAKVVEKT-NPTEPVGVVCRVDGV-----Y---QVVEYSEISLATA-Q---KRSSDGRLLFNAGNIANHFFTVPFLRDVV 342 (505)
T ss_dssp EEEEEECC-STTCSCCEEEEETTE-----E---EEECGGGSCHHHH-H---CBCTTSSBSSCEEEEEEEEEEHHHHHHHH
T ss_pred EEEEEEcc-CCccCcceEEEECCe-----E---EEEEEeeCCHHHh-h---hcccccccccceeeEEEEEecHHHHHHHH
Confidence 98888622 335668999886321 1 4678888886431 1 011112 34789999999999999887
Q ss_pred HH
Q 001402 310 ML 311 (1084)
Q Consensus 310 ~~ 311 (1084)
..
T Consensus 343 ~~ 344 (505)
T 1jv1_A 343 NV 344 (505)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 124
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}
Probab=88.68 E-value=0.56 Score=51.92 Aligned_cols=45 Identities=13% Similarity=0.161 Sum_probs=29.2
Q ss_pred CceeeeccEEE-eccccCCceeCCCcEEE-----EcEECCCcEECCCCeEe
Q 001402 409 VSDIAASAVVL-SSKIAHGVSIGEDSLIY-----DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 409 g~~i~~~~~V~-~SvL~~~v~V~~~s~Ve-----~S~l~~~v~IG~~~iIs 453 (1084)
+|.|..++.|. ++.|+.+|.|+++++|. +++|++++.||.+|.|.
T Consensus 43 ~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~~~~Ig~~a~Ig 93 (305)
T 3t57_A 43 GCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGCNNIIGHHAVVG 93 (305)
T ss_dssp TCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECSSCEECTTCEEE
T ss_pred CCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECCceEECCccEeC
Confidence 33344444443 56677777777777776 57777777777777774
No 125
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=88.63 E-value=0.62 Score=50.93 Aligned_cols=33 Identities=15% Similarity=0.111 Sum_probs=16.0
Q ss_pred ccccCCceeCCCcEE-EEcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs 453 (1084)
++|+.+|.|+.++.| .+|+|++++.|+.++.|.
T Consensus 126 ~~IG~~~~I~~~~~I~~~~~IG~~v~i~~~~~i~ 159 (283)
T 4eqy_A 126 TTLGDDNWIMAYVHIGHDCRVGSHVVLSSNAQMA 159 (283)
T ss_dssp EEECSSCEECTTCEECTTCEECSSCEECTTCEEC
T ss_pred eEECCCcEECceeEEcCCcEECCCcEECCCceEc
Confidence 445555555555554 444444444444444443
No 126
>3t57_A UDP-N-acetylglucosamine O-acyltransferase domain- protein; LEFT-handed parallel beta helix, lipid A biosynthesis, lipid synthesis; 2.10A {Arabidopsis thaliana}
Probab=88.63 E-value=0.68 Score=51.21 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=27.3
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe-----ccccCCCCCCCCCCCcceEeCCCcEeeeee
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-----GTNFPEEAGSTAEDSFRFMLPDRHCLWEVP 483 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-----g~~i~~~~~~~~~~~~~~~iP~g~~i~~v~ 483 (1084)
+.|+.+|.|+++++|. ++.|++++.|+.+|+|. ++.|.+ ++.|-++++|+..|
T Consensus 38 v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~~d~~g~~~IG~----------~~~Ig~~a~Ig~~~ 96 (305)
T 3t57_A 38 VKLGNGCKLYPSSHVFGNTELGESCVLMTGAVVGDELPGYTFIGC----------NNIIGHHAVVGVKC 96 (305)
T ss_dssp EEECTTCEECTTCEECSSEEECTTCEECTTCEECCSSSEEEEECS----------SCEECTTCEEEECC
T ss_pred CEECCCCEECCCcEECCCcEECCCcEEccCcEeccCCCCceEECC----------ceEECCccEeCccc
Confidence 3444444444444444 45555555555555554 244444 36666666665443
No 127
>4e79_A UDP-3-O-acylglucosamine N-acyltransferase; lipopolysaccaride synthesis; 2.66A {Acinetobacter baumannii} PDB: 4e75_A
Probab=88.62 E-value=0.36 Score=54.73 Aligned_cols=9 Identities=0% Similarity=-0.082 Sum_probs=4.6
Q ss_pred ceeEecCCh
Q 001402 268 DDLLQKPNV 276 (1084)
Q Consensus 268 ~~fleKPs~ 276 (1084)
..|+..|+.
T Consensus 43 ~~f~~~~~~ 51 (357)
T 4e79_A 43 LTFVNGEKH 51 (357)
T ss_dssp EEECCSGGG
T ss_pred EEEeCChhH
Confidence 455555553
No 128
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*
Probab=88.50 E-value=0.67 Score=50.37 Aligned_cols=40 Identities=20% Similarity=0.297 Sum_probs=25.3
Q ss_pred eccccCCceeCCCcEEEE---------cEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++|+.+|+|+.++.|.. ++|+++|.||.|++|. ++.|..
T Consensus 163 ~~~IG~~v~I~~gvtig~~~~~~~~~~~~IGd~v~IGaga~Il~gv~IG~ 212 (267)
T 1ssq_A 163 TSVIENDVSILQGVTLGGTGKESGDRHPKVREGVMIGAGAKILGNIEVGK 212 (267)
T ss_dssp TCEECTTCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECT
T ss_pred eeEECCCCEEcCCcEECCCcccCCCCCeEECCCeEEcCCCEEeCCcEECC
Confidence 356666666666666665 4677777777777765 354544
No 129
>3srt_A Maltose O-acetyltransferase; structural genomics, the center structural genomics of infectious diseases, csgid; 2.50A {Clostridium difficile} PDB: 4ebh_A*
Probab=88.32 E-value=0.76 Score=47.01 Aligned_cols=15 Identities=33% Similarity=0.578 Sum_probs=6.4
Q ss_pred cEECCCcEECCCCeE
Q 001402 438 SNISSGIQIGSLSIV 452 (1084)
Q Consensus 438 S~l~~~v~IG~~~iI 452 (1084)
|+|.++++||+||+|
T Consensus 145 ~~I~~gv~IG~~~vI 159 (188)
T 3srt_A 145 VIITPGITIGDNVVI 159 (188)
T ss_dssp CEECTTCEECSSEEE
T ss_pred CEECCCcEECCCCEE
Confidence 333444444444444
No 130
>3mc4_A WW/RSP5/WWP domain:bacterial transferase hexapept repeat:serine O-acetyltransferase...; ssgcid, structural genomics; 1.95A {Brucella melitensis biovar abortus}
Probab=88.22 E-value=0.57 Score=51.42 Aligned_cols=33 Identities=30% Similarity=0.445 Sum_probs=21.3
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
.+|+.+|.||++++|. +++|++++.||.|++|+
T Consensus 217 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~ 250 (287)
T 3mc4_A 217 PKIRQGVLIGAGAKILGNIQVGQCSKIAAGSVVL 250 (287)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred CEECCCCEECCCCEECCCcEECCCCEECCCCEEc
Confidence 4677777777777665 35666666666666654
No 131
>1j2z_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; UDP-N-acetylglucosamine acyltransferase, LPXA, LEFT-handed B structure; HET: SOG TLA; 2.10A {Helicobacter pylori} SCOP: b.81.1.1
Probab=88.17 E-value=0.4 Score=52.11 Aligned_cols=39 Identities=13% Similarity=0.152 Sum_probs=27.5
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe-ccccC
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV-GTNFP 458 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs-g~~i~ 458 (1084)
+++|+++|.||++++|. +|+|.+++.||++|.|. ++.|.
T Consensus 25 ~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~~~Ig 65 (270)
T 1j2z_A 25 FCVIGDGVKLDEGVKLHNNVTLQGHTFVGKNTEIFPFAVLG 65 (270)
T ss_dssp TCEECTTCEECTTCEECTTCEECSEEEECTTCEECTTCEES
T ss_pred CCEECCCCEECCCCEEcCCcEEeCCeEEcCCCEEEeeeEEC
Confidence 56677777777777774 67777777888888775 56553
No 132
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=87.99 E-value=0.67 Score=50.17 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=25.8
Q ss_pred eeeeccEEE-eccccCCceeCCCcEE--------------EEcEECCCcEECCCCeEe
Q 001402 411 DIAASAVVL-SSKIAHGVSIGEDSLI--------------YDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 411 ~i~~~~~V~-~SvL~~~v~V~~~s~V--------------e~S~l~~~v~IG~~~iIs 453 (1084)
.|..++.|. ++.|+.+|.|+++++| ..++|++++.||++|.|.
T Consensus 42 ~I~~~~~I~g~~~IG~~~~I~~~a~I~~~~~~~~~~g~~~~~v~IG~~~~Ig~~~~I~ 99 (266)
T 3r0s_A 42 VIKQGARILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATIN 99 (266)
T ss_dssp EECTTCEECSSCEECTTCEECTTCEEEECCSCSCCC----CEEEECTTCEECTTCEEE
T ss_pred EEcCCeEEeCCcEECCCcEEccCceeccCCccccccCCcCceEEECCCCEECCceEec
Confidence 344444444 4666666666666666 466666666666666665
No 133
>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
Probab=87.95 E-value=0.77 Score=50.42 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=25.5
Q ss_pred eccccCCceeCCCcEEEE---------cEECCCcEECCCCeEe-ccccCC
Q 001402 420 SSKIAHGVSIGEDSLIYD---------SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~---------S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++|+.+|+|+.+++|.. ++|+++|.||.||+|. ++.|..
T Consensus 183 ~~~IG~~v~I~~gvtLg~~~~~~~~~~~~IGd~v~IGaga~Ilggv~IG~ 232 (289)
T 1t3d_A 183 TAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGR 232 (289)
T ss_dssp TCEECSSCEECTTCEEECCSSSCSSCSCEECTTCEECTTCEEESSCEECT
T ss_pred CcEECCCCEEcCCcEECCCccccCCCCeEECCCeEECCCCEEecCcEECC
Confidence 356666666666666664 5677777777777766 354544
No 134
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=87.81 E-value=0.57 Score=52.01 Aligned_cols=21 Identities=5% Similarity=0.094 Sum_probs=12.6
Q ss_pred EECCCcEECCCCeEe-ccccCC
Q 001402 439 NISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 439 ~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+|+++|.||.||+|. ++.|..
T Consensus 253 ~IGd~V~IGaga~Il~gv~IGd 274 (310)
T 3f1x_A 253 ILEDDVIVYSNATILGRVTIGK 274 (310)
T ss_dssp EECTTCEECTTCEEESSCEECT
T ss_pred EECCCcEEcCCCEECCCcEECC
Confidence 466666666666665 454443
No 135
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=87.73 E-value=0.83 Score=49.12 Aligned_cols=34 Identities=18% Similarity=0.068 Sum_probs=18.4
Q ss_pred eccccCCceeCCCcEEE-------------EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-------------DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-------------~S~l~~~v~IG~~~iIs 453 (1084)
++.|+.+|.|+++++|. +++|++++.||++|.|.
T Consensus 53 ~~~IG~~~~I~~~~~I~~~~~~~~~~g~~~~~~IG~~~~Ig~~~~I~ 99 (262)
T 2qia_A 53 HTKIGRDNEIYQFASIGEVNQDLKYAGEPTRVEIGDRNRIRESVTIH 99 (262)
T ss_dssp EEEECSSCEECTTCEEEECCSCTTCCSCCCEEEECSSCEECTTCEEE
T ss_pred CcEECCCCEEecceEECcCCccccccCCccceEECCCceeCCCCEEc
Confidence 34555555555555554 45555555555555554
No 136
>3r0s_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; structural genomics; 2.30A {Campylobacter jejuni subsp} SCOP: b.81.1.0
Probab=87.52 E-value=0.6 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.355 Sum_probs=24.6
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
+..|+.+|.|+++++|. ++.|++++.|+.+|.|.
T Consensus 34 ~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~I~ 68 (266)
T 3r0s_A 34 DAKIGNNVVIKQGARILSDTTIGDHSRVFSYAIVG 68 (266)
T ss_dssp TCEECTTCEECTTCEECSSCEECTTCEECTTCEEE
T ss_pred CCEECCCCEEcCCeEEeCCcEECCCcEEccCceec
Confidence 45666777777777776 67777777787777773
No 137
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*
Probab=87.30 E-value=0.87 Score=49.14 Aligned_cols=32 Identities=25% Similarity=0.452 Sum_probs=13.3
Q ss_pred ccccCCceeCCCcEE-EEcEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iI 452 (1084)
++|+.++.|+.++.| ++|.|++++.||.++.|
T Consensus 89 ~~Ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i 121 (273)
T 3fs8_A 89 TIIGDNFQTGHKVTIRENTKIGNNVKIGTLSDI 121 (273)
T ss_dssp CEECTTCEECSSCEECSSCEECSSCEECTTCEE
T ss_pred CEECCCCEECCceEECCCCEECCCCEECcccee
Confidence 344444444444444 24444444444444433
No 138
>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}
Probab=87.24 E-value=0.96 Score=51.57 Aligned_cols=30 Identities=10% Similarity=0.242 Sum_probs=18.7
Q ss_pred cEECCCcEECCCCeEeccccCCCCCCCCCCCcceEeCCCcE
Q 001402 438 SNISSGIQIGSLSIVVGTNFPEEAGSTAEDSFRFMLPDRHC 478 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIsg~~i~~~~~~~~~~~~~~~iP~g~~ 478 (1084)
++|+++|.||.||+ .|+.|.. ++.|..|.+
T Consensus 291 VvIGdnv~IGagAv-~GV~IGd----------gavIGAGsV 320 (387)
T 2rij_A 291 ISVGKACLLGANSV-TGIPLGD----------NCIVDAGIA 320 (387)
T ss_dssp CEECTTCEECTTCE-ECSCBCT----------TCEECTTCE
T ss_pred eEEeCCCEECCCCc-CCcEECC----------CCEECCCCE
Confidence 56666677777766 6666655 366666654
No 139
>4eqy_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; ssgcid, beta helix, structural genomics, seattle structural center for infectious disease, transferase; 1.80A {Burkholderia thailandensis}
Probab=87.13 E-value=0.84 Score=49.84 Aligned_cols=33 Identities=15% Similarity=0.054 Sum_probs=16.9
Q ss_pred eccccCCceeCCCcEEEE--------cEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIYD--------SNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~--------S~l~~~v~IG~~~iI 452 (1084)
+++|+.+|.|++++.|.. ++|++++.|+.++.|
T Consensus 100 ~v~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I 140 (283)
T 4eqy_A 100 RLVIGDRNTIREFTTIHTGTVQDAGVTTLGDDNWIMAYVHI 140 (283)
T ss_dssp EEEECSSCEECTTEEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred eEEECCCcccCcceeEccceecCCCceEECCCcEECceeEE
Confidence 445555555555555543 444444444444444
No 140
>2qia_A UDP-N-acetylglucosamine acyltransferase; LEFT-handed parallel beta helix; HET: U20; 1.74A {Escherichia coli K12} SCOP: b.81.1.1 PDB: 1lxa_A 2jf3_A* 2aq9_A* 2qiv_X* 2jf2_A
Probab=87.08 E-value=0.71 Score=49.65 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=23.5
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
++.|+.+|.|+++++|. ++.|++++.|+.+|.|.
T Consensus 35 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~ 69 (262)
T 2qia_A 35 HVEIGEGTVLKSHVVVNGHTKIGRDNEIYQFASIG 69 (262)
T ss_dssp TEEECTTCEECSSCEECSEEEECSSCEECTTCEEE
T ss_pred CCEECCCcEECCCCEECCCcEECCCCEEecceEEC
Confidence 45666666677776666 67777777777777775
No 141
>1ssq_A SAT, serine acetyltransferase; LEFT-handed parallel beta helix; 1.85A {Haemophilus influenzae} SCOP: b.81.1.6 PDB: 1sst_A* 1s80_A 1ssm_A 3gvd_A*
Probab=87.02 E-value=0.7 Score=50.23 Aligned_cols=33 Identities=30% Similarity=0.502 Sum_probs=20.4
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
.+|+.+|.|+.+++|. +++|++++.||.|++|.
T Consensus 190 ~~IGd~v~IGaga~Il~gv~IG~~a~IGagsvV~ 223 (267)
T 1ssq_A 190 PKVREGVMIGAGAKILGNIEVGKYAKIGANSVVL 223 (267)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEEC
T ss_pred eEECCCeEEcCCCEEeCCcEECCCCEECCCCEEc
Confidence 4666777777766664 35566666666666554
No 142
>2wlg_A Polysialic acid O-acetyltransferase; enzyme, LEFT-handed beta HEL; HET: SOP; 1.90A {Neisseria meningitidis serogroup Y} PDB: 2wld_A 2wle_A* 2wlf_A* 2wlc_A*
Probab=86.95 E-value=0.73 Score=48.06 Aligned_cols=47 Identities=13% Similarity=0.108 Sum_probs=34.5
Q ss_pred CceeeeccEEEe----ccccCCceeCCCcEE----EEcEECCCcEECCCCeEecc
Q 001402 409 VSDIAASAVVLS----SKIAHGVSIGEDSLI----YDSNISSGIQIGSLSIVVGT 455 (1084)
Q Consensus 409 g~~i~~~~~V~~----SvL~~~v~V~~~s~V----e~S~l~~~v~IG~~~iIsg~ 455 (1084)
+|.|..++.+.. ++|+.+|.|++++++ ..++|++++.||.+|.|...
T Consensus 64 ~~~I~~~~~i~~~~~~~~IG~~~~Ig~~~ii~~~~~~i~IG~~~~Ig~~~~I~~~ 118 (215)
T 2wlg_A 64 DVEIMGLVCSLHSDCSLQIQAKTTMGNGEITIAEKGKISIGKDCMLAHGYEIRNT 118 (215)
T ss_dssp TCEEESEEEEECTTCEEEECTTCEECSEEEEECTTCEEEECTTCEECTTEEEESC
T ss_pred CCEECCCeEEEcCCceEEEcCCCEECCEEEEEeCCCCEEECCCCEEcCCEEEECC
Confidence 445555555553 788888888886665 57888888899988888763
No 143
>3f1x_A Serine acetyltransferase; NESG X-RAY BVR62 A6KZB9 A6KZB9_BACV8, structural genomics, P protein structure initiative; 2.00A {Bacteroides vulgatus atcc 8482}
Probab=86.61 E-value=0.86 Score=50.59 Aligned_cols=33 Identities=18% Similarity=0.253 Sum_probs=24.6
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
.+|+.+|.||++++|. +++|++++.||.|++|+
T Consensus 252 ~~IGd~V~IGaga~Il~gv~IGd~a~IGagsvV~ 285 (310)
T 3f1x_A 252 PILEDDVIVYSNATILGRVTIGKGATVGGNIWVT 285 (310)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECSSCEEC
T ss_pred CEECCCcEEcCCCEECCCcEECCCCEECCCCEEC
Confidence 3688888888888877 66677777777777664
No 144
>3fs8_A QDTC; acetyltransferase, natural product, deoxysugar; HET: ACO; 1.70A {Thermoanaerobacteriumthermosaccharolyticum} PDB: 3fsb_A* 3fsc_A*
Probab=86.31 E-value=0.85 Score=49.21 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=23.2
Q ss_pred ccccCCceeCCCcEE-EEcEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLI-YDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~V-e~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
++|+.+|.|+++++| .+++|++++.||.+++|. ++.|..
T Consensus 71 ~~Ig~~~~I~~~~~i~~~~~Ig~~~~Ig~~~~I~~~~~Ig~ 111 (273)
T 3fs8_A 71 LIIGENALIRTENVIYGDTIIGDNFQTGHKVTIRENTKIGN 111 (273)
T ss_dssp EEECTTCEECTTCEEESSCEECTTCEECSSCEECSSCEECS
T ss_pred eEECCCCEECCCCEEeCCCEECCCCEECCceEECCCCEECC
Confidence 556666666666666 356666666666666664 444433
No 145
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Probab=84.81 E-value=1.3 Score=49.15 Aligned_cols=22 Identities=14% Similarity=0.178 Sum_probs=13.9
Q ss_pred cEECCCcEECCCCeEe-ccccCC
Q 001402 438 SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
++|+++|.||.||+|. ++.|..
T Consensus 224 ~~IGd~v~IGaga~Ilggv~IG~ 246 (313)
T 3q1x_A 224 PTVGDYVTIGTGAKVLGNIIVGS 246 (313)
T ss_dssp CEECSSCEECTTCEEESSCEECS
T ss_pred CEECCCCEECCCCEECCCcEECC
Confidence 3677777777777665 355544
No 146
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=84.72 E-value=1 Score=48.42 Aligned_cols=16 Identities=13% Similarity=-0.022 Sum_probs=6.8
Q ss_pred cEECCCcEECCCCeEe
Q 001402 438 SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs 453 (1084)
++|++++.||++|.|.
T Consensus 80 v~IG~~~~Ig~~~~I~ 95 (259)
T 3hsq_A 80 TVIGDHNIFREYSNIH 95 (259)
T ss_dssp EEECSSCEECTTCEEE
T ss_pred EEECCCcEECCCCEEC
Confidence 3344444444444443
No 147
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=84.67 E-value=1.1 Score=48.23 Aligned_cols=17 Identities=12% Similarity=-0.109 Sum_probs=8.2
Q ss_pred EcEECCCcEECCCCeEe
Q 001402 437 DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 437 ~S~l~~~v~IG~~~iIs 453 (1084)
+++|++++.||++|.|.
T Consensus 85 ~~~IG~~~~Ig~~~~I~ 101 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLH 101 (265)
T ss_dssp EEEECSSCEECTTCEEE
T ss_pred eEEECCCeEECCceEEC
Confidence 44444455555554443
No 148
>1t3d_A SAT, serine acetyltransferase; LEFT-handed-beta-helix, dimer of trimers; 2.20A {Escherichia coli} SCOP: b.81.1.6
Probab=84.51 E-value=1.1 Score=49.20 Aligned_cols=32 Identities=38% Similarity=0.601 Sum_probs=19.0
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
++|+.+|.|+++++|. ++.|++++.||.|++|
T Consensus 210 ~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV 242 (289)
T 1t3d_A 210 PKIREGVMIGAGAKILGNIEVGRGAKIGAGSVV 242 (289)
T ss_dssp CEECTTCEECTTCEEESSCEECTTCEECTTCEE
T ss_pred eEECCCeEECCCCEEecCcEECCCCEECCCCEE
Confidence 4666777777766664 3445555555555555
No 149
>4hur_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); HET: ACO; 2.15A {Staphylococcus aureus} PDB: 4hus_A* 4e8l_A
Probab=83.85 E-value=0.83 Score=47.96 Aligned_cols=16 Identities=19% Similarity=0.302 Sum_probs=8.6
Q ss_pred cEECCCcEECCCCeEe
Q 001402 438 SNISSGIQIGSLSIVV 453 (1084)
Q Consensus 438 S~l~~~v~IG~~~iIs 453 (1084)
++|+++|.||.||+|.
T Consensus 120 v~IG~~v~IG~~a~I~ 135 (220)
T 4hur_A 120 IEIGNDVWIGRDVTIM 135 (220)
T ss_dssp EEECSSCEECTTCEEC
T ss_pred eEECCCcEECCCCEEe
Confidence 4455555555555554
No 150
>4e6u_A Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosam acyltransferase; lipopolysaccaride synthesis; 1.41A {Acinetobacter baumannii} PDB: 4e6t_A*
Probab=83.65 E-value=1.8 Score=46.53 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=17.7
Q ss_pred eccccCCceeCCCcEEE--------EcEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIY--------DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve--------~S~l~~~v~IG~~~iI 452 (1084)
+++|+.+|.|++++.|. +++|++++.|+.++.|
T Consensus 85 ~~~IG~~~~Ig~~~~I~~g~~~~~~~~~IG~~~~I~~~~~I 125 (265)
T 4e6u_A 85 WLEIGNNNLIREHCSLHRGTVQDNALTKIGSHNLLMVNTHI 125 (265)
T ss_dssp EEEECSSCEECTTCEEECCCTTTTSEEEECSSCEECTTCEE
T ss_pred eEEECCCeEECCceEECcccccCCCceEEccCcEEeeeeEE
Confidence 45556666666666665 3445554444444444
No 151
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3
Probab=83.13 E-value=1.6 Score=45.51 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=10.5
Q ss_pred eccccCCceeCCCcEE
Q 001402 420 SSKIAHGVSIGEDSLI 435 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~V 435 (1084)
+..|+.+|.|+++++|
T Consensus 58 ~v~IG~~~~I~~~v~i 73 (212)
T 3eev_A 58 KLVIGSFCSIGSGAVF 73 (212)
T ss_dssp CEEECSSCEECTTCEE
T ss_pred CcEECCCCEECCCCEE
Confidence 3466667777777765
No 152
>3hsq_A Acyl-[acyl-carrier-protein]--UDP-N- acetylglucosamine O-acyltransferase; L.interrogans LPXA, LPXA, LPXA acyltransferase; 2.10A {Leptospira interrogans} SCOP: b.81.1.0 PDB: 3i3a_A* 3i3x_A*
Probab=82.78 E-value=1.3 Score=47.59 Aligned_cols=33 Identities=18% Similarity=0.161 Sum_probs=21.6
Q ss_pred eccccCCceeCCCcEEEE-cEECCCcEECCCCeE
Q 001402 420 SSKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIV 452 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iI 452 (1084)
+..|+.+|.|+++++|.. +.|++++.|+.+|.|
T Consensus 30 ~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~I 63 (259)
T 3hsq_A 30 NVSIQEGTIIEGHVKICAGSEIGKFNRFHQGAVI 63 (259)
T ss_dssp SCEECTTCEECTTCEECTTEEECSSCEECTTCEE
T ss_pred CCEECCCCEEcCCcEEcCCcEECCCcEECCCCEE
Confidence 455666666666666664 666667777777766
No 153
>2i5k_A UTP--glucose-1-phosphate uridylyltransferase; LEFT-handed beta-helix, SGC domain; 3.10A {Saccharomyces cerevisiae}
Probab=82.72 E-value=3.2 Score=48.96 Aligned_cols=137 Identities=19% Similarity=0.121 Sum_probs=82.8
Q ss_pred CcCCCCCCCceeeeccCCc---CCCCCCChhHHHHHHHH--HhhhhhhhcCCCCeEEEEcCCccccc-Ccccc---CcCC
Q 001402 159 RVPWANPMGKVFLPLPYLA---ADDPDGPVPLLFDHILA--ISSCARQALKNEGGIFTMTGDVLPCF-DASTM---ILPE 229 (1084)
Q Consensus 159 R~P~~s~~GK~ft~lP~~~---~~~~~g~~~~l~e~~l~--i~~~~~~~~~~p~gVlV~sgD~I~~m-d~~~~---~~~~ 229 (1084)
++|-.+.-|+++..-|... ...|.|+.++ |..+.. +.+.... ...++|+|++||.+.+. |...+ ...+
T Consensus 177 ~~P~i~~d~~~~l~~~~~~~~~~~~P~GtGga-~~~L~~sg~l~~l~~--~g~~~v~V~ngDnL~~~~d~~~L~~~~~~~ 253 (488)
T 2i5k_A 177 RFPRVYKDSLLPVPTEYDSPLDAWYPPGHGDL-FESLHVSGELDALIA--QGREILFVSNGDNLGATVDLKILNHMIETG 253 (488)
T ss_dssp CEECEETTTCCBSCSSSSSCTTSEECCCGGGH-HHHHHHHTHHHHHHH--TTCCEEEEECTTBSSCCCCHHHHHHHHHSC
T ss_pred ccceEccccceeeccCCCCCceeeecCCCchh-hhhhhhcCcHHHHHh--cCCCEEEEEeCCcCCCcccHHHHHHHHhcC
Confidence 3787778787655544310 0145677774 332221 0111100 02569999999997664 44322 2678
Q ss_pred CcEEEEEEEcChhcccc-ceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 230 DASCIITVPITLDIASN-HGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 230 a~vtv~a~pv~~~~As~-hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
+++|+.+.+.+ .++. +|+++.+ +|. .+|.++-++|.+..-.. -..+......+|+|+|+.+++.+.
T Consensus 254 a~~t~~v~~~~--~p~~~yG~Iv~~-dG~-------~~iVE~~e~~~e~~~~~---~~~~~~~~~Ntgi~~f~~~~L~~~ 320 (488)
T 2i5k_A 254 AEYIMELTDKT--RADVKGGTLISY-DGQ-------VRLLEVAQVPKEHIDEF---KNIRKFTNFNTNNLWINLKAVKRL 320 (488)
T ss_dssp CSEEEEEEECC--GGGSSSCEEEEE-TTE-------EEEECGGGSCTTSHHHH---TCTTTCCEEEEEEEEEEHHHHHHH
T ss_pred CcEEEEEEEec--CCCCceeEEEEE-CCc-------EEEEEeccCCHHHHhhc---ccccccCEEEEEEEEEeHHHHHHH
Confidence 99998887553 3443 8998765 331 15788888887532100 022344567999999999999999
Q ss_pred HHH
Q 001402 309 VML 311 (1084)
Q Consensus 309 l~~ 311 (1084)
+..
T Consensus 321 l~~ 323 (488)
T 2i5k_A 321 IES 323 (488)
T ss_dssp HHT
T ss_pred Hhh
Confidence 885
No 154
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}
Probab=82.33 E-value=1.4 Score=46.26 Aligned_cols=28 Identities=36% Similarity=0.571 Sum_probs=13.4
Q ss_pred ccccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 421 SKIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
++|+.+|.||.+++| .++++||++|+|-
T Consensus 119 v~Igd~v~IG~~a~I-----~~gv~IG~~~~Ig 146 (219)
T 4e8l_A 119 IEIGNDVWIGRDVTI-----MPGVKIGDGAIIA 146 (219)
T ss_dssp EEECSSCEECTTCEE-----CTTCEECTTCEEC
T ss_pred cEECCCeEECCCCEE-----cCCCEECCCCEEC
Confidence 344444444444443 4455555555553
No 155
>1jyk_A LICC protein, CTP:phosphocholine cytidylytransferase; 3D structure, CTP:phosphocholine cytidylyltransferase; 1.50A {Streptococcus pneumoniae} SCOP: c.68.1.13 PDB: 1jyl_A*
Probab=82.22 E-value=2.7 Score=44.87 Aligned_cols=73 Identities=10% Similarity=0.063 Sum_probs=45.9
Q ss_pred eEEEEcCCcccccCcc-ccCcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccC
Q 001402 208 GIFTMTGDVLPCFDAS-TMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAIL 286 (1084)
Q Consensus 208 gVlV~sgD~I~~md~~-~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~ 286 (1084)
.++|+.||+++..+.- .+...+ +++++..+- ....+||. +|+++ +|..|.+||..
T Consensus 120 ~~lv~~~D~~~~~~~~~~~~~~~---~~~t~~~~~-~~~~~~v~-~d~~g---------~v~~~~e~~~~---------- 175 (254)
T 1jyk_A 120 NSYVIDADNYLFKNMFRNDLTRS---TYFSVYRED-CTNEWFLV-YGDDY---------KVQDIIVDSKA---------- 175 (254)
T ss_dssp TEEEEETTEEESSCCCCSCCCSE---EEEECEESS-CSSCCEEE-ECTTC---------BEEEEECCCSS----------
T ss_pred CEEEEeCCcccCHHHHHHHHhCC---ceEEEEccc-CCCCeEEE-ECCCC---------eEEEEEECCCC----------
Confidence 3889999999877542 222222 233333221 11368876 77776 79999998621
Q ss_pred CCCcceeeeeeEEecHHHHHHH
Q 001402 287 DDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 287 ~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
.+..+|+|+|+.+.+..+
T Consensus 176 ----~~~~~Giy~~~~~~~~~l 193 (254)
T 1jyk_A 176 ----GRILSGVSFWDAPTAEKI 193 (254)
T ss_dssp ----EEBCCSEEEECHHHHHHH
T ss_pred ----CcEEEEEEEEcHHHHHHH
Confidence 267999999988754433
No 156
>2y6p_A 3-deoxy-manno-octulosonate cytidylyltransferase; lipid A; HET: CTP; 2.10A {Aquifex aeolicus}
Probab=81.47 E-value=2 Score=44.71 Aligned_cols=89 Identities=17% Similarity=0.091 Sum_probs=53.0
Q ss_pred CCeEEEEcCCc-ccc-cCccccC----cCCCcEEEEEEEcC--hhccccceEEEECCCCCccccccccccceeEecCChh
Q 001402 206 EGGIFTMTGDV-LPC-FDASTMI----LPEDASCIITVPIT--LDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVD 277 (1084)
Q Consensus 206 p~gVlV~sgD~-I~~-md~~~~~----~~~a~vtv~a~pv~--~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~ 277 (1084)
.+.|+|+.||+ +.. .++..+. ..++.+|+. .+.. ......++| +.|+++ +|..|.+||...
T Consensus 86 ~~~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~g---------~v~~~~e~~~~~ 154 (234)
T 2y6p_A 86 VDLIINYQGDEPFVYEEDIKLIFRELEKGERVVTLA-RKDKEAYERPEDVKV-VLDREG---------YALYFSRSPIPY 154 (234)
T ss_dssp CSEEEECCTTCCCCCHHHHHHHHHHHHHTCSEEEEE-EECSGGGGCTTSCEE-EECTTS---------BEEEEESSCCSC
T ss_pred CCEEEEecCCcCcCCHHHHHHHHHHHHhCCCeEEEe-cCCHHHhcCCCceEE-EEcCCC---------CEeeeecCCCCc
Confidence 57999999999 655 4555553 234334433 3321 112234565 346666 789999998541
Q ss_pred hhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 278 ELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 278 ~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
. +. + .+. ..+..+|+|+|+.+.+.++..
T Consensus 155 ~-~~-~--~~~-~~~~~~giy~~~~~~l~~~~~ 182 (234)
T 2y6p_A 155 F-RK-N--DTF-YPLKHVGIYGFRKETLMEFGA 182 (234)
T ss_dssp C-SS-C--CSS-CCEEEEEEEEEEHHHHHHHHH
T ss_pred c-cc-c--ccc-eeeEEEEEEEcCHHHHHHHHh
Confidence 1 00 0 001 245799999999998877654
No 157
>2icy_A Probable UTP-glucose-1-phosphate uridylyltransferase 2; AT3G03250, UDP, putative UDP-glucose pyrophosphorylase; HET: UPG U5P; 1.64A {Arabidopsis thaliana} SCOP: b.81.1.4 c.68.1.5 PDB: 2icx_A* 1z90_A 2q4j_A
Probab=80.81 E-value=3.3 Score=48.51 Aligned_cols=136 Identities=18% Similarity=0.186 Sum_probs=81.6
Q ss_pred cCCCCCCCceeeeccCC---cCCCCCCChhHHHHHHHH--HhhhhhhhcCCCCeEEEEcCCcccccCcccc----CcCCC
Q 001402 160 VPWANPMGKVFLPLPYL---AADDPDGPVPLLFDHILA--ISSCARQALKNEGGIFTMTGDVLPCFDASTM----ILPED 230 (1084)
Q Consensus 160 ~P~~s~~GK~ft~lP~~---~~~~~~g~~~~l~e~~l~--i~~~~~~~~~~p~gVlV~sgD~I~~md~~~~----~~~~a 230 (1084)
+|-.+.-|++...-|.. ....|.|+.. +|..+.. +..... . ...++++|+++|.+-.+....+ ...++
T Consensus 165 ~P~i~~e~~~~l~~~~~~~~~e~~P~GtGG-~~~~L~~sGll~~l~-~-~G~e~~~V~n~DnL~~~~d~~ll~~~~~~~a 241 (469)
T 2icy_A 165 YPRVVADEFVPWPSKGKTDKEGWYPPGHGD-VFPALMNSGKLDTFL-S-QGKEYVFVANSDNLGAIVDLTILKHLIQNKN 241 (469)
T ss_dssp EECEETTTTEEGGGGTCCSGGGEECCCGGG-HHHHHHHHSHHHHHH-T-TTCCEEEEEETTBTTCCCCHHHHHHHHHHTC
T ss_pred eeeEccccCccccCCCCCccccCCcCCchH-HHHHHHhcCcHHHHH-h-cCCCEEEEEECCcCCcccCHHHHHHHHHcCC
Confidence 77777778766655521 1114566666 3332210 011111 0 0246999999999866543444 26789
Q ss_pred cEEEEEEEcChhcc-ccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 231 ASCIITVPITLDIA-SNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 231 ~vtv~a~pv~~~~A-s~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
++|+...+.. .+ ..+||+...+ + +. ++.+|-|||.... .+.. ..+...+..+|+|+|+.+++.+++
T Consensus 242 ~~t~~v~~k~--~~~~~~Gvl~~~d-g------~~-~vvE~~e~p~~~~-~e~k--~~~~~~~~N~g~y~~~~~~L~~i~ 308 (469)
T 2icy_A 242 EYCMEVTPKT--LADVKGGTLISYE-G------KV-QLLEIAQVPDEHV-NEFK--SIEKFKIFNTNNLWVNLKAIKKLV 308 (469)
T ss_dssp SEEEEEEECC--TTCCSSCEEEEET-T------EE-EEECGGGSCGGGH-HHHH--SSSSCCEEEEEEEEEEHHHHHHHH
T ss_pred CeeEEEEEec--cCCCceeEEEEEC-C------EE-EEEEEeccChhhh-hhhc--cccccceeeEEEEEEcHHHHHHHH
Confidence 9988877664 34 4699988642 2 01 4788889987531 0000 113444669999999999999888
Q ss_pred HH
Q 001402 310 ML 311 (1084)
Q Consensus 310 ~~ 311 (1084)
..
T Consensus 309 ~~ 310 (469)
T 2icy_A 309 EA 310 (469)
T ss_dssp HT
T ss_pred hc
Confidence 74
No 158
>3tv0_A Dynactin subunit 6; LEFT-handed beta-helix, ARP11, cytosol, structural; 2.15A {Homo sapiens}
Probab=79.06 E-value=4.1 Score=41.51 Aligned_cols=38 Identities=11% Similarity=-0.027 Sum_probs=23.8
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEe-ccccCC
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
+++.++.|+.++.|+.+.|++++.||.+|+|. ++.|.+
T Consensus 87 ~Ig~~~~i~~~~~i~~~~Ig~~~~Ig~~~~I~~gv~IG~ 125 (194)
T 3tv0_A 87 IIGTNNVFEVGCYSQAMKMGDNNVIESKAYVGRNVILTS 125 (194)
T ss_dssp EECSSCEECTTCEECCSEECSSCEECTTCEECTTEEECS
T ss_pred EECCcceEecceeEeeeeecccceecceeeECCeEEECC
Confidence 45666666666666666666666666666664 455544
No 159
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*
Probab=78.33 E-value=1.7 Score=45.50 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=13.7
Q ss_pred cccCCceeCCCcEEEEcEECCCcEECCCCeEe
Q 001402 422 KIAHGVSIGEDSLIYDSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 422 vL~~~v~V~~~s~Ve~S~l~~~v~IG~~~iIs 453 (1084)
+|+.+|.||.+++| .++++||++|+|-
T Consensus 112 ~IG~~v~IG~~a~I-----~~gv~Ig~~~~Ig 138 (212)
T 1xat_A 112 LIGHEVWIGTEAMF-----MPGVRVGHGAIIG 138 (212)
T ss_dssp EECTTCEECTTCEE-----CTTCEECTTCEEC
T ss_pred EECCCCEECCCCEE-----eCCCEECCCCEEC
Confidence 44555555555544 4455555555543
No 160
>1vic_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics; 1.80A {Haemophilus influenzae} SCOP: c.68.1.13 PDB: 1vh3_A 3duv_A*
Probab=77.85 E-value=3 Score=44.54 Aligned_cols=96 Identities=17% Similarity=0.047 Sum_probs=58.4
Q ss_pred CCeEEEEcCCccc--ccCccccC----cCCCcEEEEEEEcCh-hcccc--ceEEEECCCCCccccccccccceeEecCCh
Q 001402 206 EGGIFTMTGDVLP--CFDASTMI----LPEDASCIITVPITL-DIASN--HGVIVAAKDGILNENYALSLVDDLLQKPNV 276 (1084)
Q Consensus 206 p~gVlV~sgD~I~--~md~~~~~----~~~a~vtv~a~pv~~-~~As~--hGV~~~d~~~~~~~~~~~~~v~~fleKPs~ 276 (1084)
.+.|+|+.||+.. ..++..+. ..++++++++.|+.- ++..+ ++.++.|++| ++..|.+||-.
T Consensus 91 ~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~v~~f~~~~~~ 161 (262)
T 1vic_A 91 NEIIVNIQGDEPLIPPVIVRQVADNLAKFNVNMASLAVKIHDAEELFNPNAVKVLTDKDG---------YVLYFSRSVIP 161 (262)
T ss_dssp TCEEEECCTTCTTCCHHHHHHHHHHHHHHTCSEEEEEEECCCHHHHTCTTSCEEEECTTS---------BEEEEESSCSS
T ss_pred CCEEEEEeCCcCccCHHHHHHHHHHHHhcCCCEEEEEEecCCHHHhcCCCceEEEECCCC---------CEeeeecCCCC
Confidence 5789999999832 33444442 346788888888753 23332 3334447666 68888888742
Q ss_pred --hhhh----cccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 277 --DELA----KNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 277 --~~m~----~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
.+-. ..+....|......+|+|+|+.+++..+..
T Consensus 162 ~~r~~~~~~~~~~~~~~p~~~~~~~giy~~~~~~l~~~~~ 201 (262)
T 1vic_A 162 YDRDQFMNLQDVQKVQLSDAYLRHIGIYAYRAGFIKQYVQ 201 (262)
T ss_dssp CCHHHHTTCSCGGGCCCCTTCEEEEEEEEEEHHHHHHHHH
T ss_pred cCCccccccccccccccccceEEEEEEEEeeHHHHHHHHh
Confidence 1100 000112344467899999999998877654
No 161
>1h7e_A 3-deoxy-manno-octulosonate cytidylyltransferase; nucleotidyltransferase, CMP-KDO synthetase, nucleoside monophosphate glycosides; 1.83A {Escherichia coli} SCOP: c.68.1.13 PDB: 1gqc_A* 1gq9_A 1h6j_A 1h7f_A* 1h7g_A* 1h7h_A* 1h7t_A*
Probab=77.58 E-value=1.7 Score=45.72 Aligned_cols=90 Identities=14% Similarity=0.080 Sum_probs=54.8
Q ss_pred CCeEEEEcCCcccc--cCccccC----cC-CCcEEEEEEEcChhccccceEEE--ECCCCCccccccccccceeEecCCh
Q 001402 206 EGGIFTMTGDVLPC--FDASTMI----LP-EDASCIITVPITLDIASNHGVIV--AAKDGILNENYALSLVDDLLQKPNV 276 (1084)
Q Consensus 206 p~gVlV~sgD~I~~--md~~~~~----~~-~a~vtv~a~pv~~~~As~hGV~~--~d~~~~~~~~~~~~~v~~fleKPs~ 276 (1084)
.+.|+|+.||+.+. .++..+. .. ++++++.+.+++..+..+.+++. .++++ .+..|.+||..
T Consensus 89 ~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---------~~~~~~~~~~~ 159 (245)
T 1h7e_A 89 ADIYINLQGDEPMIRPRDVETLLQGMRDDPALPVATLCHAISAAEAAEPSTVKVVVNTRQ---------DALYFSRSPIP 159 (245)
T ss_dssp CSEEEECCTTCTTCCHHHHHHHHHHHHHCTTCCEEEEEEEECHHHHTCTTSCEEEECTTC---------BEEEEESSCSS
T ss_pred CCEEEEEcCCcCcCCHHHHHHHHHHHHhCCCCCEEEEeecCCHHHhcCCCCcEEEECCCC---------cEEEeecCCCC
Confidence 56899999998532 2333332 23 67888888887545444444332 25555 67888888654
Q ss_pred hhhhcccccCCCCcceeeeeeEEecHHHHHHHH
Q 001402 277 DELAKNHAILDDGRALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 277 ~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll 309 (1084)
..-. . .....+..+|+|+|+.+.+.+++
T Consensus 160 ~~r~--~---~~~~~~~~~g~y~~~~~~l~~~~ 187 (245)
T 1h7e_A 160 YPRN--A---EKARYLKHVGIYAYRRDVLQNYS 187 (245)
T ss_dssp CCTT--G---GGCCEEEEEEEEEEEHHHHHHGG
T ss_pred CCcc--c---ccCceeEEEEEEEcCHHHHHHHH
Confidence 2100 0 00123568999999998876654
No 162
>2rij_A Putative 2,3,4,5-tetrahydropyridine-2-carboxylate succinyltransferase; structural genomics, joint center for structural genomics; HET: MSE CIT; 1.90A {Campylobacter jejuni}
Probab=73.63 E-value=2.3 Score=48.38 Aligned_cols=37 Identities=19% Similarity=0.359 Sum_probs=20.0
Q ss_pred EEEeccccCCceeCCCcEEEEcE-----ECCC----cEECCCCeEe
Q 001402 417 VVLSSKIAHGVSIGEDSLIYDSN-----ISSG----IQIGSLSIVV 453 (1084)
Q Consensus 417 ~V~~SvL~~~v~V~~~s~Ve~S~-----l~~~----v~IG~~~iIs 453 (1084)
+++++.|+.+|.||+++.|.... +.++ +.||++|.|-
T Consensus 255 ~~I~~~Ig~~vvIGdnv~Ig~ga~I~g~l~g~~~~~VvIGdnv~IG 300 (387)
T 2rij_A 255 CMVEGRISSSAIVGEGSDVGGGASILGVLSGTSGNAISVGKACLLG 300 (387)
T ss_dssp CEECSEECTTCEECTTCEECTTCEECCBCSSTTCCBCEECTTCEEC
T ss_pred EEEeeEECCCCEECCCCEECCCceEcceecCCCccCeEEeCCCEEC
Confidence 44445555555555555555433 3333 6677666663
No 163
>4fcu_A 3-deoxy-manno-octulosonate cytidylyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.90A {Acinetobacter baumannii} PDB: 3pol_A
Probab=72.05 E-value=5.8 Score=42.49 Aligned_cols=94 Identities=17% Similarity=0.086 Sum_probs=54.6
Q ss_pred CCeEEEEcCCcccc--cCccccC-----cCCCcEEEEEEEc-C---hhccccceEEEECCCCCccccccccccceeEecC
Q 001402 206 EGGIFTMTGDVLPC--FDASTMI-----LPEDASCIITVPI-T---LDIASNHGVIVAAKDGILNENYALSLVDDLLQKP 274 (1084)
Q Consensus 206 p~gVlV~sgD~I~~--md~~~~~-----~~~a~vtv~a~pv-~---~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKP 274 (1084)
.+.|+|+.||.-.. -+...+. .++++++.++.++ + +..-+..+| +.|++| ++..|-.||
T Consensus 91 ~d~vlv~~gD~Pli~~~~i~~li~~~~~~~~~~~at~~~~~~~~~~~~~p~~~kv-v~d~~g---------~~l~fsr~~ 160 (253)
T 4fcu_A 91 DDIIVNVQGDEPLLPAQLVQQVAKLLVDKPNCSMSTLCEPIHALDEFQRDSIVKV-VMSKQN---------EALYFSRAT 160 (253)
T ss_dssp TCEEEECCTTCTTCCHHHHHHHHHHHHHCTTCSEEEEEEECCCHHHHHCTTSCEE-EECTTS---------BEEEEESSC
T ss_pred CCEEEEEeCCcccCCHHHHHHHHHHHHhCCCCCEEEEeEEcCCHHHccCCCccEE-EECCCC---------eEEEecCCC
Confidence 46899999998211 1222221 2345555455554 2 233334556 577777 789999998
Q ss_pred Chhhhhccccc---CCCCcceeeeeeEEecHHHHHHHHH
Q 001402 275 NVDELAKNHAI---LDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 275 s~~~m~~~~av---~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
-... +..... ..+...+...|+|.|+.+++.++..
T Consensus 161 ip~~-r~~~~~~~~~~~~~~~~~~GiY~f~~~~l~~~~~ 198 (253)
T 4fcu_A 161 IPYD-RDGAKRDEPTLHTQAFRHLGLYAYRVSLLQEYVT 198 (253)
T ss_dssp CSCC-TTTSSSSSCCCCSCCEEEEEEEEEEHHHHHHHTT
T ss_pred CCCC-CCcccccccccccceeEEEEEEEeCHHHHHHHHh
Confidence 5421 000000 0023457799999999999888764
No 164
>3q1x_A Serine acetyltransferase; cysteine biosynthesis, LEFT handed helix, OASS; 1.59A {Entamoeba histolytica} PDB: 3p47_A 3p1b_A
Probab=71.21 E-value=3.6 Score=45.66 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=25.4
Q ss_pred eccccCCceeCCCcEEE-EcEECCCcEECCCCeEe
Q 001402 420 SSKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIVV 453 (1084)
Q Consensus 420 ~SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iIs 453 (1084)
+.+|+.+|.||++++|. .++|++++.||.|++|+
T Consensus 223 ~~~IGd~v~IGaga~Ilggv~IG~~a~IGagsvV~ 257 (313)
T 3q1x_A 223 HPTVGDYVTIGTGAKVLGNIIVGSHVRIGANCWID 257 (313)
T ss_dssp SCEECSSCEECTTCEEESSCEECSSEEECTTCEEC
T ss_pred CCEECCCCEECCCCEECCCcEECCCCEECCCCEEC
Confidence 45888888888888775 46777777777777764
No 165
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Probab=71.14 E-value=3.5 Score=42.91 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=16.3
Q ss_pred ccccCCceeCCCcEEE-EcEECCCcEECCCCeE
Q 001402 421 SKIAHGVSIGEDSLIY-DSNISSGIQIGSLSIV 452 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve-~S~l~~~v~IG~~~iI 452 (1084)
++|+.+|.||.+++|. ++.|++++.||.+++|
T Consensus 114 v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V 146 (209)
T 1mr7_A 114 TIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVV 146 (209)
T ss_dssp EEECSSCEECTTCEECTTCEECTTCEECTTCEE
T ss_pred cEECCCCEEcCCCEEcCCCEECCCCEEcCCCEE
Confidence 4556666666665553 2344444444444443
No 166
>3oc9_A UDP-N-acetylglucosamine pyrophosphorylase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.80A {Entamoeba histolytica}
Probab=56.23 E-value=21 Score=40.81 Aligned_cols=133 Identities=19% Similarity=0.139 Sum_probs=81.6
Q ss_pred cCCCCCCCceeeeccCCcCCCCCCChhHHHHHHHHHhhhhhhhc--CCCCeEEEEcCCc-ccccCccccC----cCCCcE
Q 001402 160 VPWANPMGKVFLPLPYLAADDPDGPVPLLFDHILAISSCARQAL--KNEGGIFTMTGDV-LPCFDASTMI----LPEDAS 232 (1084)
Q Consensus 160 ~P~~s~~GK~ft~lP~~~~~~~~g~~~~l~e~~l~i~~~~~~~~--~~p~gVlV~sgD~-I~~md~~~~~----~~~a~v 232 (1084)
+|-.+.-||++.+=|..-..-|.|.-+ +|..+..- ..+..| .--++++|.+.|- +-+...+.+. ..++++
T Consensus 133 ~P~i~~dg~i~l~~~~~i~~~P~GhGg-i~~aL~~s--G~Ld~l~~~Gieyi~v~nvDN~L~~~~Dp~~lg~~~~~~~d~ 209 (405)
T 3oc9_A 133 LPVVDFNGKILYEKKDKPYMAPNGHGG-LFKALKDN--GILEFMNEKGIKYSVAHNVDNILCKDVDPNMIGYMDLLQSEI 209 (405)
T ss_dssp EECBCTTSCBCEEETTEECEEECCGGG-HHHHHHHT--THHHHHHHHTCCEEEEECTTBTTCCSSCHHHHHHHHHTTCSE
T ss_pred eeEEecCCCeecCCCCccccccCCChH-HHHHHHHC--CcHHHHHhcCCEEEEEEeCCCcccccCCHHHHHHHHHcCCCE
Confidence 788888898865444321224556665 44432210 000101 0246999999999 7667766663 688998
Q ss_pred EEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhcccccCCCCc---ceeeeeeEEecHHHHHHHH
Q 001402 233 CIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAILDDGR---ALLDTGIIAVRGKAWEELV 309 (1084)
Q Consensus 233 tv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~---~l~s~Giy~f~~~~~~~ll 309 (1084)
++-+++-... ....||+...+... +|.++-|+|.+.+.+ ..++. -...+++++|+.+++++.+
T Consensus 210 ~~kvv~k~~~-dek~Gvl~~~dg~~--------~vvEysei~~e~e~~-----~~~g~l~fn~~Ni~~h~fs~~fL~~i~ 275 (405)
T 3oc9_A 210 CIKIVKKGFK-EEKVGVLVKEQERI--------KVVEYTELTDELNKQ-----LSNGEFIYNCGHISINGYSTSFLEKAA 275 (405)
T ss_dssp EEEEEECCST-TCSCCEEEEETTEE--------EEECGGGCCTTTTCB-----CTTSCBSSCEEEEEEEEEEHHHHHHHT
T ss_pred EEEEEECCCC-CCccceEEEECCee--------EEEEEeeCCHHHhhc-----CCCCceeeccceeEeeecCHHHHHHhh
Confidence 8877765421 25688888532211 589999999873222 11222 2356788999999999887
No 167
>1xat_A Xenobiotic acetyltransferase; chloramphenicol, LEFT-handed helix; 3.20A {Pseudomonas aeruginosa} SCOP: b.81.1.3 PDB: 2xat_A*
Probab=56.19 E-value=6.8 Score=40.83 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=13.8
Q ss_pred EcEECCCcEECCCCeEe-ccccCC
Q 001402 437 DSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 437 ~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.++|+++|.||.+|+|. |+.|..
T Consensus 110 ~v~IG~~v~IG~~a~I~~gv~Ig~ 133 (212)
T 1xat_A 110 DTLIGHEVWIGTEAMFMPGVRVGH 133 (212)
T ss_dssp CEEECTTCEECTTCEECTTCEECT
T ss_pred CeEECCCCEECCCCEEeCCCEECC
Confidence 35566666666666665 455544
No 168
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=54.30 E-value=6.5 Score=31.76 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=43.7
Q ss_pred CCccEEEEccCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 43 PTWDAIVLTAASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 43 ~~w~~~v~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
|++.+-++-..+++|++.+-+.|.+.+..- -+|.+..++.+.|-+..-.|-||.|+
T Consensus 1 P~i~i~~~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~ 57 (61)
T 2opa_A 1 PYVTVKMLEGRTDEQKRNLVEKVTEAVKETTGASEEKIVVFIEEMRKDHYAVAGKRL 57 (61)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEG
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEEEEEEEcCHHHeeECCEEh
Confidence 345555566789999999999999887653 56888888888887668888888875
No 169
>1mr7_A Streptogramin A acetyltransferase; LEFT-handed parallel beta-helix domain; 1.80A {Enterococcus faecium} SCOP: b.81.1.3 PDB: 1khr_A* 1kk5_A 1kk4_A 1kk6_A 1mr9_A* 1mrl_A* 3dho_A*
Probab=52.42 E-value=8.4 Score=39.99 Aligned_cols=39 Identities=28% Similarity=0.329 Sum_probs=27.9
Q ss_pred ccccCCceeCCCcEEEE-cEECCCcEECCCCeEe-ccccCC
Q 001402 421 SKIAHGVSIGEDSLIYD-SNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 421 SvL~~~v~V~~~s~Ve~-S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
..+..+|.||++++|.. |.|.++++||++|+|. ++.|.+
T Consensus 108 ~~~~~~v~Ig~~v~IG~~a~I~~gv~Ig~~~~Igags~V~~ 148 (209)
T 1mr7_A 108 LPIKGDTIIGNDVWIGKDVVIMPGVKIGDGAIVAANSVVVK 148 (209)
T ss_dssp SCCCCCEEECSSCEECTTCEECTTCEECTTCEECTTCEECS
T ss_pred ccccCCcEECCCCEEcCCCEEcCCCEECCCCEEcCCCEEcC
Confidence 34566788888888864 6778888888888886 444433
No 170
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=52.31 E-value=6.5 Score=31.84 Aligned_cols=56 Identities=16% Similarity=0.191 Sum_probs=44.1
Q ss_pred CCccEEEEccCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 43 PTWDAIVLTAASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 43 ~~w~~~v~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
|++.+-++-..+++|++.+-+.|-+.+..- -+|.+..++.+.|-+..-.|-||.|+
T Consensus 1 P~i~I~~~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e~~~~~w~~~G~~~ 57 (62)
T 1otf_A 1 PIAQLYIIEGRTDEQKETLIRQVSEAMANSLDAPLERVRVLITEMPKNHFGIGGEPA 57 (62)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEEEECGGGEEETTEET
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEeCHHHeEECCEEH
Confidence 345555566789999999999999887763 57888888888886668888888875
No 171
>4e8l_A Virginiamycin A acetyltransferase; structural genomics, antibiotic resistance, center for struc genomics of infectious diseases (csgid); 2.70A {Staphylococcus aureus}
Probab=51.94 E-value=8.6 Score=40.27 Aligned_cols=24 Identities=21% Similarity=0.343 Sum_probs=13.9
Q ss_pred EEcEECCCcEECCCCeEe-ccccCC
Q 001402 436 YDSNISSGIQIGSLSIVV-GTNFPE 459 (1084)
Q Consensus 436 e~S~l~~~v~IG~~~iIs-g~~i~~ 459 (1084)
.+++|+++|.||.+|+|. ++.|..
T Consensus 117 g~v~Igd~v~IG~~a~I~~gv~IG~ 141 (219)
T 4e8l_A 117 GDIEIGNDVWIGRDVTIMPGVKIGD 141 (219)
T ss_dssp CCEEECSSCEECTTCEECTTCEECT
T ss_pred CCcEECCCeEECCCCEEcCCCEECC
Confidence 345666666666666665 344444
No 172
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=46.72 E-value=13 Score=30.21 Aligned_cols=57 Identities=11% Similarity=0.099 Sum_probs=43.4
Q ss_pred CCccEEEEccCCHHHHHHHHHHHHHHHHc-CCCCCccEEEEeeCCCCCccCChhhHHH
Q 001402 43 PTWDAIVLTAASPEQAELYEWQLRRAKRM-GRIASSTVTLAVPDPDGQRIGSGAATLN 99 (1084)
Q Consensus 43 ~~w~~~v~t~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~Dp~g~~iGsGg~Tl~ 99 (1084)
|++++-+.-..+++|++.+-++|.+.+.. =-+|.+..++.+.|-+..-.|-||.|+.
T Consensus 2 P~i~i~~~~g~s~eqk~~l~~~lt~~l~~~lg~~~~~v~V~i~e~~~~~w~~gG~~~~ 59 (64)
T 3abf_A 2 VVLKVTLLEGRPPEKKRELVRRLTEMASRLLGEPYEEVRVILYEVRRDQWAAGGVLFS 59 (64)
T ss_dssp EEEEEEEETTCCHHHHHHHHHHHHHHHHHHTTCCGGGEEEEEEEECGGGEEETTEEHH
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCCCcccEEEEEEEcCHHHeeECCEEhH
Confidence 34455556678999999999999988764 2367777887887766578999998864
No 173
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=41.24 E-value=13 Score=29.80 Aligned_cols=56 Identities=13% Similarity=0.129 Sum_probs=44.0
Q ss_pred CCccEEEEccCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 43 PTWDAIVLTAASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 43 ~~w~~~v~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
|++.+-+....+++|++.+-+.|.+.+..- -+|.+..++.+.|-+....|-||.|+
T Consensus 4 P~i~i~~~~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v~v~i~e~~~~~~~~~G~~~ 60 (63)
T 2x4k_A 4 PIVNVKLLEGRSDEQLKNLVSEVTDAVEKTTGANRQAIHVVIEEMKPNHYGVAGVRK 60 (63)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEET
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEc
Confidence 566666677789999999999999887754 56778777777776658889998764
No 174
>2xme_A CTP-inositol-1-phosphate cytidylyltransferase; CDP-inositol, DI-MYO-inositol phosphate; 1.89A {Archaeoglobus fulgidus} PDB: 2xmh_A*
Probab=39.69 E-value=23 Score=36.67 Aligned_cols=76 Identities=14% Similarity=0.116 Sum_probs=44.5
Q ss_pred CeEEEEcCCcccccCc-cccCcCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEecCChhhhhccccc
Q 001402 207 GGIFTMTGDVLPCFDA-STMILPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQKPNVDELAKNHAI 285 (1084)
Q Consensus 207 ~gVlV~sgD~I~~md~-~~~~~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fleKPs~~~m~~~~av 285 (1084)
+.++|+.+|+.+..+. ..+.. ..++ ++....+......++++..+ ++ +|..|.+||..
T Consensus 109 ~~~lv~~~D~p~~~~~~~~l~~-~~~~-~~~~~~~~~~~~~~~~v~~~-~g---------~v~~~~~~~~~--------- 167 (232)
T 2xme_A 109 DRFILTMGDHVYSQQFIEKAVR-GEGV-IADREPRFVDIGEATKIRVE-DG---------RVAKIGKDLRE--------- 167 (232)
T ss_dssp SSEEEEETTEEECHHHHHHHTT-CCEE-EEESSCSSSCTTTSCEEEEE-TT---------EEEEEETTCSS---------
T ss_pred CCEEEEcCCcccCHHHHHHHHh-CCCc-EEEccccccCCCcceEEEEc-CC---------EEEEeecCCCC---------
Confidence 4688999999853332 22222 2232 22111112223457777776 45 68888888742
Q ss_pred CCCCcceeeeeeEEecHHHHHH
Q 001402 286 LDDGRALLDTGIIAVRGKAWEE 307 (1084)
Q Consensus 286 ~~~~~~l~s~Giy~f~~~~~~~ 307 (1084)
. ..+.+|+|+|+.+.+..
T Consensus 168 --~--~~~~~g~~~~~~~~~~~ 185 (232)
T 2xme_A 168 --F--DCVDTGFFVLDDSIFEH 185 (232)
T ss_dssp --C--SEEEEEEEEECTTHHHH
T ss_pred --c--ceEEEEEEEECHHHHHH
Confidence 1 25689999999987753
No 175
>2yqc_A UDP-N-acetylglucosamine pyrophosphorylase; uridine-diphospho-N- acetylglucosamine, N-acetylglucosamine-1-phosphate, transferase; 1.90A {Candida albicans} PDB: 2yqh_A* 2yqj_A* 2yqs_A*
Probab=36.94 E-value=55 Score=38.36 Aligned_cols=137 Identities=15% Similarity=0.012 Sum_probs=78.5
Q ss_pred cCCCCCCC-ceeeeccCCcCCCCCCChhHHHHHHHH--HhhhhhhhcCCCCeEEEEcCCcccccCc-ccc----CcCCCc
Q 001402 160 VPWANPMG-KVFLPLPYLAADDPDGPVPLLFDHILA--ISSCARQALKNEGGIFTMTGDVLPCFDA-STM----ILPEDA 231 (1084)
Q Consensus 160 ~P~~s~~G-K~ft~lP~~~~~~~~g~~~~l~e~~l~--i~~~~~~~~~~p~gVlV~sgD~I~~md~-~~~----~~~~a~ 231 (1084)
+|-.+.-| |++..-|..-...|.|.-+ +|..+.. +...... .--+++.|.+.|.+.-+.. +.+ ..++++
T Consensus 202 ~P~i~~dg~~i~l~~~~~i~~~P~G~Gg-i~~aL~~sG~Ld~l~~--~G~~yi~v~~vDN~l~~~~Dp~~lg~~~~~~~~ 278 (486)
T 2yqc_A 202 LPCFNLQGNKILLELKNSICQSPDGNGG-LYKALKDNGILDDLNS--KGIKHIHMYCVDNCLVKVADPIFIGFAIAKKFD 278 (486)
T ss_dssp EECBCTTSSSBCEEETTEECEEECCGGG-HHHHHHHTTHHHHHHH--HTCCEEEEEETTBTTCCTTCHHHHHHHHHHTCS
T ss_pred ceeEcCCCCccccCCCCccccCcCCchH-HHHHHHHcCcHHHHHh--cCCeEEEEECCCCceeeccCHHHHHHHHHcCCC
Confidence 67777767 7666555321113456665 3332211 0000000 0356999999997765322 222 267899
Q ss_pred EEEEEEEcChhccccceEEEECC-CCCccccccccccceeEecCChhhhhcccccCCC-----CcceeeeeeEEecHHHH
Q 001402 232 SCIITVPITLDIASNHGVIVAAK-DGILNENYALSLVDDLLQKPNVDELAKNHAILDD-----GRALLDTGIIAVRGKAW 305 (1084)
Q Consensus 232 vtv~a~pv~~~~As~hGV~~~d~-~~~~~~~~~~~~v~~fleKPs~~~m~~~~av~~~-----~~~l~s~Giy~f~~~~~ 305 (1084)
+++.+++... -....||+.... +|. . +|.+|.|||....-. .... ...+..+|+|+|+.+++
T Consensus 279 ~~~~vv~k~~-~~e~~Gvl~~~~~dg~------~-~vvEy~E~~~~~~~~----~~~~~~~~~~~~~~Ni~~~~~~l~~L 346 (486)
T 2yqc_A 279 LATKVVRKRD-ANESVGLIVLDQDNQK------P-CVIEYSEISQELANK----KDPQDSSKLFLRAANIVNHYYSVEFL 346 (486)
T ss_dssp EEEEEEECCS-TTCCCCEEEEETTTTE------E-EEECGGGSCHHHHHC----EETTEEEEESSCEEEEEEEEEEHHHH
T ss_pred EEEEEEEcCC-CCCceeEEEEEecCCC------E-EEEEEecCCHHHhhc----ccccccccccccceeEEEEEEeHHHH
Confidence 8888877622 124578888652 331 1 589999999752100 0011 12467899999999999
Q ss_pred HHHHHH
Q 001402 306 EELVML 311 (1084)
Q Consensus 306 ~~ll~~ 311 (1084)
.+.+..
T Consensus 347 ~~~l~~ 352 (486)
T 2yqc_A 347 NKMIPK 352 (486)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 986654
No 176
>1ezi_A CMP-N-acetylneuraminic acid synthetase; homodimer, alpha-beta-alpha, transferase; 2.00A {Neisseria meningitidis} SCOP: c.68.1.13 PDB: 1eyr_A
Probab=30.44 E-value=68 Score=32.78 Aligned_cols=83 Identities=7% Similarity=-0.001 Sum_probs=46.4
Q ss_pred CCeEEEEcCCcccc--cCccccC----cCCCcEEEEEEEcChhccccceEEEECCCCCccccccccccceeEe-c---CC
Q 001402 206 EGGIFTMTGDVLPC--FDASTMI----LPEDASCIITVPITLDIASNHGVIVAAKDGILNENYALSLVDDLLQ-K---PN 275 (1084)
Q Consensus 206 p~gVlV~sgD~I~~--md~~~~~----~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~~~~~~~~~~v~~fle-K---Ps 275 (1084)
.+.|+|+.||+.+. -++..+. ..++++++.+.++.-. ..++.++|++| .+..|.+ | |.
T Consensus 97 ~d~vlv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~---p~~~~~~~~~g---------~~~~~~~~~~~~~~ 164 (228)
T 1ezi_A 97 SGTVTLLQPTSPLRTGAHIREAFSLFDEKIKGSVVSACPMEHH---PLKTLLQINNG---------EYAPMRHLSDLEQP 164 (228)
T ss_dssp SEEEEECCTTCTTCCHHHHHHHHTTCCTTTCCCEEEEEECSSC---TTSCEEECC-----------CEEESSCHHHHTCC
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCCEEEEEEecCCC---cceeeEEcCCC---------cEeeccccccccCC
Confidence 46899999998432 2233332 3456788888876531 13444446655 5667765 2 11
Q ss_pred hhhhhcccccCCCCcceeeeeeEEecHHHHHHH
Q 001402 276 VDELAKNHAILDDGRALLDTGIIAVRGKAWEEL 308 (1084)
Q Consensus 276 ~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~l 308 (1084)
.+++ +.......|+|+|+.+.+.+.
T Consensus 165 ~~~~--------~~~~~~~~giy~~~~~~l~~~ 189 (228)
T 1ezi_A 165 RQQL--------PQAFRPNGAIYINDTASLIAN 189 (228)
T ss_dssp GGGS--------CCEEEEEEEEEEEEHHHHHHH
T ss_pred cccC--------chhheeeeEEEEEeHHHHhhC
Confidence 2111 111234579999998876553
No 177
>2dpw_A Hypothetical protein TTHA0179; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 2.90A {Thermus thermophilus} SCOP: c.68.1.19
Probab=25.85 E-value=10 Score=39.54 Aligned_cols=88 Identities=15% Similarity=0.153 Sum_probs=52.4
Q ss_pred CCChhHHHHHHHHHhhhhhhhcCCCCeEEEEcCCcc--cccCccccC--cCCCcEEEEEEEcChhccccceEEEECCCCC
Q 001402 182 DGPVPLLFDHILAISSCARQALKNEGGIFTMTGDVL--PCFDASTMI--LPEDASCIITVPITLDIASNHGVIVAAKDGI 257 (1084)
Q Consensus 182 ~g~~~~l~e~~l~i~~~~~~~~~~p~gVlV~sgD~I--~~md~~~~~--~~~a~vtv~a~pv~~~~As~hGV~~~d~~~~ 257 (1084)
.|+..+++.-+-. + ++.++|+.||+. -.-++..+. ..++++++.+.+++- ..+.||+.. .
T Consensus 70 ~g~~~~i~~a~~~--------~--~~~~lv~~~D~P~~~~~~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~----~- 133 (232)
T 2dpw_A 70 GGLLENLEQALEH--------V--EGRVLVATGDIPHLTEEAVRFVLDKAPEAALVYPIVPKEA-VEARFPRTK----R- 133 (232)
T ss_dssp SSHHHHHHHHHHT--------C--CSEEEEEETTCTTCCHHHHHHHHHHCCSCSEEEEEEEHHH-HHHHCTTCC----C-
T ss_pred CCHHHHHHHHHHH--------c--CCCEEEEeCCcccCCHHHHHHHHhcCCCCCEEEEEeeccc-hhhhCCCcc----e-
Confidence 5677766543321 1 168999999993 233333332 345677777766421 113454321 1
Q ss_pred ccccccccccceeEecCChhhhhcccccCCCCcceeeeeeEEecHHHHHHHHH
Q 001402 258 LNENYALSLVDDLLQKPNVDELAKNHAILDDGRALLDTGIIAVRGKAWEELVM 310 (1084)
Q Consensus 258 ~~~~~~~~~v~~fleKPs~~~m~~~~av~~~~~~l~s~Giy~f~~~~~~~ll~ 310 (1084)
+|..|.+||. ..+|+|+|+.+.+..+..
T Consensus 134 --------~v~~~~ek~~-----------------~~~g~~~~~~~~l~~~~~ 161 (232)
T 2dpw_A 134 --------TYARLREGTF-----------------TGGNLLLLDKSLFRKALP 161 (232)
T ss_dssp --------CCEEETTEEE-----------------EECSEEEEEHHHHTTTHH
T ss_pred --------eEEEEecCce-----------------eeeeEEEEcHHHHHHHHH
Confidence 4677777762 478999999998766554
No 178
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=24.17 E-value=31 Score=33.16 Aligned_cols=55 Identities=9% Similarity=0.102 Sum_probs=28.3
Q ss_pred CccEEEEcc---CCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 44 TWDAIVLTA---ASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 44 ~w~~~v~t~---~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
+.-.|-||. .+++|++.|-+.|.+.+... -||.+..|+.+.|.++.-.|-||.|+
T Consensus 77 p~a~v~i~sig~~t~e~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~nG~Tf 135 (135)
T 3t5s_A 77 LCCFVDFYCIGVISQAKNPSISAAITGCLTQHFKVKPERVYISFNEAKGHNWGFNGSTF 135 (135)
T ss_dssp SCEEEEEECCC-----CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC-------------
T ss_pred eEEEEEEEEEEEEeccCCchHHHHHHHHHHHhcccCccEEEEEeccccCcccccCCCcC
Confidence 333444543 56789999999988775543 48999999999999999999999985
No 179
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=22.93 E-value=61 Score=29.94 Aligned_cols=48 Identities=13% Similarity=0.088 Sum_probs=40.0
Q ss_pred cCCHHHHHHHHHHHHHHHHc-CCCCCccEEEEeeCCCCCccCChhhHHH
Q 001402 52 AASPEQAELYEWQLRRAKRM-GRIASSTVTLAVPDPDGQRIGSGAATLN 99 (1084)
Q Consensus 52 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~Dp~g~~iGsGg~Tl~ 99 (1084)
..+++|++.|-+.|.+.+.. =-+|.+..|+.+.|-+..-.|-||.|.-
T Consensus 67 g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e~~~~~wg~~G~~~~ 115 (119)
T 2os5_A 67 ALSADDNIRHTQKITQFCQDTLKLPKDKVIITYFDLQPIHVGFNGTTVA 115 (119)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEECCGGGCEETTEEHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEECCHHHeeECCEEhh
Confidence 47899999999999987654 2468888899999988889999999863
No 180
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=22.93 E-value=53 Score=30.14 Aligned_cols=53 Identities=8% Similarity=0.029 Sum_probs=42.8
Q ss_pred cEEEEccCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 46 DAIVLTAASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 46 ~~~v~t~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
.+-.+-..+++|++.|-+.|-+.+... -+|.+..|+.+.|.+..-.|-||.|+
T Consensus 61 ~i~~ig~~~~e~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d~~~~~wg~~G~tf 114 (114)
T 4dh4_A 61 RVASIGGITSSTNCKIAAALSAACERHLGVPKNRIYTTFTNKSPSEWAMGDRTF 114 (114)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGCEETTEEC
T ss_pred EEEEEcCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEeCCHHHeEECCEeC
Confidence 344455678999999999998765543 47999999999999999999999873
No 181
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=22.55 E-value=52 Score=30.84 Aligned_cols=57 Identities=11% Similarity=0.042 Sum_probs=46.3
Q ss_pred CCCccEEEEc---cCCHHHHHHHHHHHHHHHHcC-CCCCccEEEEeeCCCCCccCChhhHH
Q 001402 42 VPTWDAIVLT---AASPEQAELYEWQLRRAKRMG-RIASSTVTLAVPDPDGQRIGSGAATL 98 (1084)
Q Consensus 42 ~~~w~~~v~t---~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~Dp~g~~iGsGg~Tl 98 (1084)
.+++-.|-+| ..+++|++.+-+.|.+.+..- -+|.+..|+.+.|-+..-.|-||.|.
T Consensus 56 ~~~~~~i~i~~~~grt~eqK~~l~~~l~~~l~~~lg~~~~~v~V~i~e~~~~~wg~gG~~~ 116 (128)
T 1mww_A 56 SDDYTVIEINLMAGRMEGTKKRLIKMLFSELEYKLGIRAHDVEITIKEQPAHCWGFRGMTG 116 (128)
T ss_dssp CTTCEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECGGGEEETTEET
T ss_pred CCCcEEEEEEECCCCCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEECCHHHeeECCEEH
Confidence 3456667777 579999999999999887653 37888899999998878999999985
No 182
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=21.66 E-value=65 Score=26.48 Aligned_cols=50 Identities=10% Similarity=0.147 Sum_probs=38.8
Q ss_pred cCCHHHHHHHHHHHHHHHHc-CCCCCccEEEEeeCCCCCccCChhhHHHHH
Q 001402 52 AASPEQAELYEWQLRRAKRM-GRIASSTVTLAVPDPDGQRIGSGAATLNAI 101 (1084)
Q Consensus 52 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~Dp~g~~iGsGg~Tl~~l 101 (1084)
..+++|++.+-+.|.+.+.. =-+|.+..++++.+=+....|-||-|+--+
T Consensus 13 grs~eqK~~l~~~lt~~l~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e~ 63 (67)
T 3m21_A 13 GPTNEQKQQLIEGVSDLMVKVLNKNKASIVVIIDEVDSNNYGLGGESVHHL 63 (67)
T ss_dssp BSCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEECCTTTEEETTEEHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHCcCcccEEEEEEEeCHHHeEECCEEHHHH
Confidence 58999999999999887653 236777777777776558899999987643
No 183
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=21.64 E-value=55 Score=26.70 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=45.4
Q ss_pred CCccEEEEccCCHHHHHHHHHHHHHHHHc-CCCCCccEEEEeeCCCCCccCChhhHHHH
Q 001402 43 PTWDAIVLTAASPEQAELYEWQLRRAKRM-GRIASSTVTLAVPDPDGQRIGSGAATLNA 100 (1084)
Q Consensus 43 ~~w~~~v~t~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~Dp~g~~iGsGg~Tl~~ 100 (1084)
|++.+=++...+++|++..-+.|-+.+.. =-+|.+..++.+.+=+....|-||-++--
T Consensus 1 P~i~I~~~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v~V~i~e~~~~~w~~gG~~~~e 59 (65)
T 3ry0_A 1 PLIRVTLLEGRSPQEVAALGEALTAAAHETLGTPVEAVRVIVEETPPERWFVGGRSVAE 59 (65)
T ss_dssp CEEEEEEESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCEEEEEEECGGGCEETTEEHHH
T ss_pred CEEEEEEcCCCCHHHHHHHHHHHHHHHHHHhCcCcccEEEEEEEcCHHHeeECCEEHHH
Confidence 45566667778999999999999887665 34788888888888666888999988653
Done!