BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001403
(1084 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 448
SV V +SPDG + A V+L+ +G Q L+ + H +V +AFS P Q
Sbjct: 59 SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 506
++ + DDKT+K+W+ G + GH + V+ + P + I S S D +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 507 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
+ L + + G +A+S +G+ + S K + WN G + +T
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 617
G +SV V F I +A DD +K+W+ N QLL T+ P+
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 618 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 661
I +N+NG LL + + + +P+ ++ +A SD+ L
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 721
+ + T+TG + V+ + D + I+ +++K+ L+ R + LL
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 722 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 781
++ + + ++ GQ I + + + +W R+G
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 782 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 841
Q + T S+S V A S +D + SAS + + T+ S + +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 842 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 901
AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS + S+ D
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 902 IFVWDVDGWGIQTC 915
+ +W+ +G +QT
Sbjct: 532 VKLWNRNGQLLQTL 545
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 70/257 (27%), Positives = 117/257 (45%), Gaps = 33/257 (12%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 448
SV V +SPDG + A V+L+ +G Q L+ + H +V +AFS P Q
Sbjct: 18 SVRGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVWGVAFS-PDGQ- 70
Query: 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 506
++ + DDKT+K+W+ G + GH + V + P + I S S D +K W
Sbjct: 71 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT----IASASDDKTVKLW 125
Query: 507 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
+ L + + G +A+S +G+ + S K + WN G + +T
Sbjct: 126 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 177
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFN 623
G +SV V F I +A DD +K+W+ N QLL T+ G + R + F+
Sbjct: 178 G---HSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLT---GHSSSVRGVAFS 230
Query: 624 KNGTLLAVIANENRIKI 640
+G +A +++ +K+
Sbjct: 231 PDGQTIASASDDKTVKL 247
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 27/227 (11%)
Query: 418 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 477
H G R +LE AH +V +AFS P Q ++ + DDKT+K+W+ G + GH
Sbjct: 3 HMGVKERNRLE--AHSSSVRGVAFS-PDGQ-TIASASDDKTVKLWNR-NGQLLQTLTGHS 57
Query: 478 APVYSLC--PHAKENIHFIFSISVDGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSANG 533
+ V+ + P + I S S D +K W + L + + G +A+S +G
Sbjct: 58 SSVWGVAFSPDGQT----IASASDDKTVKLWNRNGQLLQTLTGHSSSVRG---VAFSPDG 110
Query: 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 593
+ + S K + WN G + +T G +SV V F I +A DD
Sbjct: 111 QTIASASDDKT----VKLWNR-NGQLLQTLTG---HSSSVWGVAFSPDGQTIASASDDKT 162
Query: 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640
+K+W+ N QLL T+ G + F+ +G +A +++ +K+
Sbjct: 163 VKLWNRNG-QLLQTLT--GHSSSVWGVAFSPDGQTIASASDDKTVKL 206
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 828 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 887
+ T+ S + +AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS
Sbjct: 50 LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 888 DALNILVSSGGDAQIFVWDVDGWGIQTC 915
+ S+ D + +W+ +G +QT
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 2/81 (2%)
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
S + +AF+P D IA DD T+ ++N R+ +++ L GHS V G+ FS +
Sbjct: 16 SSSVRGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIA 73
Query: 895 SSGGDAQIFVWDVDGWGIQTC 915
S+ D + +W+ +G +QT
Sbjct: 74 SASDDKTVKLWNRNGQLLQTL 94
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 49 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253
Score = 56.2 bits (134), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 822
+ + T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 22 SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 823 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 77 YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942
F+ N++VS D + +WDV +T + L+T + + + + F++D +
Sbjct: 136 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 943 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 187 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 1000 S 1000
S
Sbjct: 246 S 246
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 41 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 99
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 100 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 149
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 150 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 196
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 197 CRIWDTA 203
Score = 36.6 bits (83), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 51 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 103
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 104 LVSASDDKTLKIWDVSSGKCLKTL 127
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 276 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 335
Score = 35.4 bits (80), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G
Sbjct: 198 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK------ 249
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ + G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 250 CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 308
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 309 TACHPTENIIASAALENDKTIKLWKSD 335
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251
Score = 56.2 bits (134), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 822
+ + T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 20 SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 823 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 75 YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942
F+ N++VS D + +WDV +T + L+T + + + + F++D +
Sbjct: 134 CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 943 FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 185 -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 1000 S 1000
S
Sbjct: 244 S 244
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 39 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 97
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 98 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 147
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 148 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 194
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 195 CRIWDTA 201
Score = 36.6 bits (83), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 49 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 101
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 102 LVSASDDKTLKIWDVSSGKCLKTL 125
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 274 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 333
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G
Sbjct: 196 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK------ 247
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ + G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 248 CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 306
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 307 TACHPTENIIASAALENDKTIKLWKSD 333
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 830
P +P + +F + T +AV S N +L S+S +I ++ K T
Sbjct: 12 PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 890
I + +A++ D+N++ DD T+ I++ S + + L+GHS V F+
Sbjct: 67 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 891 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 950
N++VS D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 126 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 951 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 176 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 1007 RILSTA 1012
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 34.3 bits (77), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 180 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 234
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 235 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 291 TACHPTENIIASAALENDKTIKLWKSD 317
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 824
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 61 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 945 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 1007 RILSTA 1012
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.6 bits (83), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 33.9 bits (76), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 180 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 234
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 235 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 291 TACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 24 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 80 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 834
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 9 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 64 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 951
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 123 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 952 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 16 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 74
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 75 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 125
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 126 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 172
Query: 1007 RILSTA 1012
RI TA
Sbjct: 173 RIWDTA 178
Score = 36.6 bits (83), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 26 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 78
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 79 LVSASDDKTLKIWDVSSGKCLKTL 102
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 251 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 310
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 173 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 227
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 228 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 283
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 284 TACHPTENIIASAALENDKTIKLWKSD 310
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 42 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 98 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246
Score = 56.2 bits (134), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 768 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 826
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 19 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 74 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 133 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 947 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 183 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 34 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 92
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 93 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 142
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 143 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 189
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 190 CRIWDTA 196
Score = 36.2 bits (82), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 44 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 96
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 97 LVSASDDKTLKIWDVSSGKCLKTL 120
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 269 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 328
Score = 34.7 bits (78), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 191 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 245
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 246 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 301
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 302 TACHPTENIIASAALENDKTIKLWKSD 328
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 768 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 826
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 57 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 947 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 125
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 172
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 173 CRIWDTA 179
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 27 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 79
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 34.3 bits (77), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 174 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 228
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 229 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 285 TACHPTENIIASAALENDKTIKLWKSD 311
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 26 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 82 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 824
+T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 1 GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 115 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 945 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 165 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 18 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 76
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 77 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 126
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 127 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 173
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 174 CRIWDTA 180
Score = 36.6 bits (83), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 28 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 80
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 81 LVSASDDKTLKIWDVSSGKCLKTL 104
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 253 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 312
Score = 34.3 bits (77), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 175 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 229
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 230 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 285
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 286 TACHPTENIIASAALENDKTIKLWKSD 312
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILT 830
P +P + +F + T +AV S N +L S+S +I ++ K T
Sbjct: 2 PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 890
I + +A++ D+N++ DD T+ I++ S + + L+GHS V F+
Sbjct: 57 ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 891 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 950
N++VS D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 116 NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 951 ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 13 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 71
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 72 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 122
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 123 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 169
Query: 1007 RILSTA 1012
RI TA
Sbjct: 170 RIWDTA 175
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 23 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 75
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 76 LVSASDDKTLKIWDVSSGKCLKTL 99
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 248 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 307
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 170 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 224
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 225 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 280
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 281 TACHPTENIIASAALENDKTIKLWKSD 307
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 25 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 81 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 768 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 826
T+ P +P + +F + T +AV S N +L S+S +I ++ K
Sbjct: 2 TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 886
TI + +A++ D+N++ DD T+ I++ S + + L+GHS V F
Sbjct: 57 FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946
+ N++VS D + +WDV +T + L+T + + + + F++D + L+V
Sbjct: 116 NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 947 HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 166 SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 27/187 (14%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 17 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 75
Query: 889 ALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946
N+LVS+ D + +WDV G ++T + P Q+ ++
Sbjct: 76 DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP----------QSNLIVSG 125
Query: 947 -HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005
+ + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 SFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------ 172
Query: 1006 CRILSTA 1012
CRI TA
Sbjct: 173 CRIWDTA 179
Score = 36.2 bits (82), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 27 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 79
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 80 LVSASDDKTLKIWDVSSGKCLKTL 103
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 252 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 311
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 174 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 228
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 229 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 284
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 285 TACHPTENIIASAALENDKTIKLWKSD 311
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 31 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 87 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 824
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 6 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 61 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 120 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 945 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 170 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 23 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 81
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 82 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 132
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 133 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 179
Query: 1007 RILSTA 1012
RI TA
Sbjct: 180 RIWDTA 185
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 33 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 85
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 86 LVSASDDKTLKIWDVSSGKCLKTL 109
Score = 34.7 bits (78), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 258 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 317
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 180 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 234
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 235 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 290
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 291 TACHPTENIIASAALENDKTIKLWKSD 317
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 625
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 626 -GTLLAVIANENRIKI--LETPE 645
G + + +N + I L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 822
+ + T+ P +P + F + T +AV S N +L S+S +I ++
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 823 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 883 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 941
F+ N++VS D + +WDV G ++T + P + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 942 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998
L+V ++ I++ CLK + P+S FS + + + + +D TL + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 999 AS 1000
S
Sbjct: 224 YS 225
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
+ + T+ + +S+ F+P + +A D I I+ A + + GH ++ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
+S N+LVS+ D + +WDV + + L+T G + Q+ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLI 125
Query: 945 LV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002
+ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL--------- 175
Query: 1003 EVQCRILSTA 1012
CRI TA
Sbjct: 176 ---CRIWDTA 182
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 177 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 288 TACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 30 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 86 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
+ VS V F ILAA D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 824
+ T+ P +P + +F + T +AV S N +L S+S +I ++
Sbjct: 5 SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 60 GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
F+ N++VS D + +WDV +T + L+T + + + + F++D + L
Sbjct: 119 NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 945 LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
+V ++ I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 169 IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 77/186 (41%), Gaps = 25/186 (13%)
Query: 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888
T+ + +S+ F+P + +A D I I+ A + + GH ++ + +S
Sbjct: 22 FTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSS 80
Query: 889 ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946
N+LVS+ D + +WDV + + L+T G + Q+ ++
Sbjct: 81 DSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLIVSGS 131
Query: 947 HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006
+ + I++ + CLK P S P+S F+ D ++ +S DG C
Sbjct: 132 FDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL------------C 178
Query: 1007 RILSTA 1012
RI TA
Sbjct: 179 RIWDTA 184
Score = 36.2 bits (82), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584
+ + +S NG L S + + W +G ++T G +L +S V + + +
Sbjct: 32 SSVKFSPNGEWL----ASSSADKLIKIWGAYDGKFEKTISGHKL---GISDVAWSSDSNL 84
Query: 585 ILAAGDDHVIKIWDMNKVQLLTTI 608
+++A DD +KIWD++ + L T+
Sbjct: 85 LVSASDDKTLKIWDVSSGKCLKTL 108
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 257 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 316
Score = 33.9 bits (76), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 179 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 233
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 234 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 289
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 290 TACHPTENIIASAALENDKTIKLWKSD 316
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 834
+P + +F + T +AV S N +L ++S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 951
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 952 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 82/200 (41%), Gaps = 25/200 (12%)
Query: 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLAASSADKLIKIWGAYDGKFEKTI 64
Query: 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934
GH ++ + +S N+LVS+ D + +WDV + + L+T G +
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFC 115
Query: 935 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 116 CNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDG 174
Query: 993 TLSIHEASNLEVQCRILSTA 1012
CRI TA
Sbjct: 175 L------------CRIWDTA 182
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 62/147 (42%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G
Sbjct: 177 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGK------ 228
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ + G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 229 CLKTYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 288 TACHPTENIIASAALENDKTIKLWKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 834
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 951
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 952 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933
GH ++ + +S N+LVS+ D + +WDV G ++T + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---- 120
Query: 934 IQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S D
Sbjct: 121 ------QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 992 GTLSIHEASNLEVQCRILSTA 1012
G CRI TA
Sbjct: 174 GL------------CRIWDTA 182
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 896
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/142 (22%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 177 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 483 LCPHAKENIHFIFSISVDGKIK 504
H ENI ++ D IK
Sbjct: 288 TACHPTENIIASAALENDKTIK 309
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 834
+P + +F + T +AV S N +L S+S +I ++ K TI
Sbjct: 13 KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ +A++ D+N++ DD T+ I++ S + + L+GHS V F+ N++V
Sbjct: 68 KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 951
S D + +WDV +T + L+T + + + + F++D + L+V ++
Sbjct: 127 SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 952 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000
I++ CLK + P+S FS + + + + +D TL + + S
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 81/201 (40%), Gaps = 27/201 (13%)
Query: 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874
G S ++ + T+ + +S+ F+P + +A D I I+ A + +
Sbjct: 6 GRGSEFVKPNYALKFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTI 64
Query: 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933
GH ++ + +S N+LVS+ D + +WDV G ++T + P
Sbjct: 65 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNP---- 120
Query: 934 IQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991
Q+ ++ + + I++ + CLK P S P+S F+ D ++ +S D
Sbjct: 121 ------QSNLIVSGSFDESVRIWDVKTGKCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYD 173
Query: 992 GTLSIHEASNLEVQCRILSTA 1012
G CRI TA
Sbjct: 174 GL------------CRIWDTA 182
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 896
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+
Sbjct: 255 IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASA 300
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 37/148 (25%), Positives = 63/148 (42%), Gaps = 16/148 (10%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD A KT L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 177 RIWDT-ASGQCLKT-LIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLK--- 231
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYDS 510
H ENI ++ D IK LY S
Sbjct: 288 TACHPTENIIASAALENDKTIK--LYKS 313
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449
+V+ V +SP+G L + + +++++ G D + + I H ++D+A+S+ +
Sbjct: 28 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
++ DDKT+K+WD +G + +GH Y C + + I S S D ++ W
Sbjct: 84 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ A + + ++ +G + S +S +G + W+ + G +T +
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 625
+ VS V F ILAA D+ +K+WD +K + L T +N + C N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 626 -GTLLAVIANENRIKI--LETPE 645
G + + +N + I L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 822
+ + T+ P +P + F + T +AV S N +L S+S +I ++
Sbjct: 1 SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 823 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882
K TI + +A++ D+N++ DD T+ I++ S + + L+GHS V
Sbjct: 56 YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 883 GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 941
F+ N++VS D + +WDV G ++T + P + + F++D +
Sbjct: 115 CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 942 RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998
L+V ++ I++ CLK + P+S FS + + + + +D L + +
Sbjct: 166 --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 999 AS 1000
S
Sbjct: 224 YS 225
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 79/190 (41%), Gaps = 25/190 (13%)
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884
+ + T+ + +S+ F+P + +A D I I+ A + + GH ++ +
Sbjct: 16 YALMFTLAGHTKAVSSVKFSP-NGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDV 74
Query: 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944
+S N+LVS+ D + +WDV + + L+T G + Q+ +
Sbjct: 75 AWSSDSNLLVSASDDKTLKIWDV-----SSGKCLKTLKG----HSNYVFCCNFNPQSNLI 125
Query: 945 LV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002
+ + + I++ + CLK P S P+S F+ D ++ +S DG
Sbjct: 126 VSGSFDESVRIWDVKTGMCLKT-LPAHSDPVSAVHFNRDGSLIVSSSYDGL--------- 175
Query: 1003 EVQCRILSTA 1012
CRI TA
Sbjct: 176 ---CRIWDTA 182
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG--GDAQIFVWDVD 908
I G +D+ + I+N ++ E++ KL+GH+ V NI+ S+ D I +W D
Sbjct: 255 IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD 314
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 61/147 (41%), Gaps = 14/147 (9%)
Query: 368 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 427
++WD + L L+ D V+ V +SP+G + A + ++L+ Y G +
Sbjct: 177 RIWDTASGQCL--KTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLK--- 231
Query: 428 EIDAHVGNVND-----LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
+ G+ N+ FS + +++ +D + +W+ T +GH V S
Sbjct: 232 ---TYTGHKNEKYCIFANFSVTGGKW-IVSGSEDNMVYIWNLQTKEIVQKLQGHTDVVIS 287
Query: 483 LCPHAKENIHFIFSISVDGKIKAWLYD 509
H ENI ++ D IK W D
Sbjct: 288 TACHPTENIIASAALENDKTIKLWKSD 314
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 799 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 851
C K A + ASGG ++V+ K + + + +A+ PH++NVI
Sbjct: 40 CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 852 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 902
A G +D T++++ E + LEGH+KRV G+V A N+L+S+G D I
Sbjct: 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 903 FVWDV 907
VWDV
Sbjct: 157 LVWDV 161
Score = 33.5 bits (75), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639
TA++ +L+AG D+VI +WD+ + T+ + ++++G L+ + R++
Sbjct: 142 TAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 640 ILETPESNSVDA 651
++E P +V A
Sbjct: 202 VIE-PRKGTVVA 212
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 799 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 851
C K A + ASGG ++V+ K + + + +A+ PH++NVI
Sbjct: 40 CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 852 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 902
A G +D T++++ E + LEGH+KRV G+V A N+L+S+G D I
Sbjct: 98 ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 903 FVWDV 907
VWDV
Sbjct: 157 LVWDV 161
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/72 (25%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639
TA++ +L+AG D+VI +WD+ + T+ + ++++G L+ + R++
Sbjct: 142 TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVR 201
Query: 640 ILETPESNSVDA 651
++E P +V A
Sbjct: 202 VIE-PRKGTVVA 212
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 442
+VR +V +S DG + + +Q++ G + L+I AH V AFS
Sbjct: 617 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 501
+ I+ TC DK +K+WD+ TG ++++ H V + C ++ H + + S D
Sbjct: 674 SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 502 KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 534
+K W + R V++ G R+ SAN R
Sbjct: 731 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 535 -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 570
R F C S +G+ +V + G + + G H
Sbjct: 791 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630
+++ F + A + +++W+++ L D G L + F+ +G+
Sbjct: 848 STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 631 VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 683
+++ I++ ET + ++A VL + + V + + G IA + ++
Sbjct: 906 TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 684 EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 737
P+ V P + A + + P+ + + S V K R + +
Sbjct: 965 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797
G+ + + + + V +W W D ++ H QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857
F L ++ L + G + ++ V+T + T S A + D + D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 858 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 915
T I++ + +L+GH+ V FS IL+++G D +I +W+V DG + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 916 RSLQTPDGVMTLAPSETHIQFHKD 939
+ +G T T + F D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196
Score = 36.2 bits (82), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 893
P + +PH +A G +D I I ++ V S GH K V + F+ L
Sbjct: 967 PEAQVSCCCLSPH-LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1025
Query: 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945
+SS D+ I VW+ W QT D V A ET F Q LL
Sbjct: 1026 ISSSEDSVIQVWN---W--------QTGDYVFLQAHQETVKDFRLLQDSRLL 1066
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 442
+VR +V +S DG + + +Q++ G + L+I AH V AFS
Sbjct: 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 501
+ I+ TC DK +K+WD+ TG ++++ H V + C ++ H + + S D
Sbjct: 667 SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 502 KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 534
+K W + R V++ G R+ SAN R
Sbjct: 724 FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 535 -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 570
R F C S +G+ +V + G + + G H
Sbjct: 784 KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630
+++ F + A + +++W+++ L D G L + F+ +G+
Sbjct: 841 STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 631 VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 683
+++ I++ ET + ++A VL + + V + + G IA + ++
Sbjct: 899 TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 684 EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 737
P+ V P + A + + P+ + + S V K R + +
Sbjct: 958 YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797
G+ + + + + V +W W D ++ H QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857
F L ++ L + G + ++ V+T + T S A + D + D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 858 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 915
T I++ + +L+GH+ V FS IL+++G D +I +W+V DG + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 916 RSLQTPDGVMTLAPSETHIQFHKD 939
+ +G T T + F D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/112 (30%), Positives = 45/112 (40%), Gaps = 12/112 (10%)
Query: 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 893
P + +PH +A G +D I I ++ V S GH K V + F+ L
Sbjct: 960 PEAQVSCCCLSPH-LEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTL 1018
Query: 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945
+SS D+ I VW+ W QT D V A ET F Q LL
Sbjct: 1019 ISSSEDSVIQVWN---W--------QTGDYVFLQAHQETVKDFRLLQDSRLL 1059
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 512
D T+++WD TG+ T F GH V S+ + +N I S S D IK W ++LG
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 513 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570
+ + + + C R + +++ + SCG K + WN + +K + G
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 571 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
N+V+V + D L A G D +WD+N+ + L T+D G + +CF+ N
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 629 LAVIANENRIKILE 642
L A IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 450
V+ VV S DG ++L+ G+ R+ + H +V +AFS+ +QI
Sbjct: 89 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQI-- 143
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH--FIFSISVDGKIKAWLY 508
++ DKTIK+W+ + G Y+ + + C N I S D +K W
Sbjct: 144 VSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 202
Query: 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ + ++ + S +G S G K+G++ L W+ +EG T G +
Sbjct: 203 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML--WDLNEGKHLYTLDGGDI 258
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599
++ + F + + AA IKIWD+
Sbjct: 259 ----INALCFSPNRYWLCAATGPS-IKIWDL 284
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 512
D T+++WD TG+ T F GH V S+ + +N I S S D IK W ++LG
Sbjct: 84 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 513 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570
+ + + + C R + +++ + SCG K + WN + +K + G
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 571 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
N+V+V + D L A G D +WD+N+ + L T+D G + +CF+ N
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 629 LAVIANENRIKILE 642
L A IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 89/211 (42%), Gaps = 17/211 (8%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 450
V+ VV S DG ++L+ G+ R+ + H +V +AFS+ +QI
Sbjct: 66 VSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFV---GHTKDVLSVAFSSDNRQI-- 120
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH--FIFSISVDGKIKAWLY 508
++ DKTIK+W+ + G Y+ + + C N I S D +K W
Sbjct: 121 VSGSRDKTIKLWNTL-GVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNL 179
Query: 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ + ++ + S +G S G K+G++ L W+ +EG T G +
Sbjct: 180 ANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG--KDGQAML--WDLNEGKHLYTLDGGDI 235
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599
++ + F + + AA IKIWD+
Sbjct: 236 ----INALCFSPNRYWLCAATGPS-IKIWDL 261
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 122/307 (39%), Gaps = 41/307 (13%)
Query: 322 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK 380
P+ + + G SP++ + FHPV ++ D KVWD F+
Sbjct: 95 IPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDAT---------IKVWDYETGD--FE 143
Query: 381 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA 440
L + SV + + G LL + ++L+ + G R + H NV+ ++
Sbjct: 144 RTL-KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGHDHNVSSVS 199
Query: 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD 500
I ++ DKTIK+W+ TG +F GH V + P+ ++ I S S D
Sbjct: 200 IMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGTLIASCSND 255
Query: 501 GKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE--SFLVE- 551
++ W+ + + + + C A YS+ S T K G+ FL+
Sbjct: 256 QTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGKPGPFLLSG 314
Query: 552 --------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603
W+ S G T G N V V F + IL+ DD +++WD +
Sbjct: 315 SRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKR 371
Query: 604 LLTTIDA 610
+ T++A
Sbjct: 372 CMKTLNA 378
Score = 36.6 bits (83), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 24/99 (24%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 898
T + F+P +V+ +D+TI +++ + + L+GH+ V + F + +L S
Sbjct: 112 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 170
Query: 899 DAQIFVWDVDGWGIQTCRSLQTPD---GVMTLAPSETHI 934
D I +WD G + R++ D +++ P+ HI
Sbjct: 171 DMTIKLWDFQ--GFECIRTMHGHDHNVSSVSIMPNGDHI 207
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+++C DDKT++VWD + H V SL H + ++ + SVD +K W
Sbjct: 353 ILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH--KTAPYVVTGSVDQTVKVW 407
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
G D TI +++ + + L GH V G++F ++S D + VWD
Sbjct: 314 GSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWD 366
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
L GH VT ++F +++VS+ DA I VWD +
Sbjct: 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYE 138
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 20/86 (23%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 889
T+ + + ++F+ H ++A D TI +++ + E I + GH V+ +
Sbjct: 145 TLKGHTDSVQDISFD-HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPN 203
Query: 890 LNILVSSGGDAQIFVWDVD-GWGIQT 914
+ +VS+ D I +W+V G+ ++T
Sbjct: 204 GDHIVSASRDKTIKMWEVQTGYCVKT 229
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/217 (23%), Positives = 92/217 (42%), Gaps = 36/217 (16%)
Query: 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490
HV V + + V++ D +KVWD T + ++ +GH VYSL +
Sbjct: 237 GHVAAVRCVQYDGR----RVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL---QFDG 289
Query: 491 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG--------TS 542
IH + S S+D I+ W D C ++ G + + G S
Sbjct: 290 IHVV-SGSLDTSIRVW-----------DVETGNCI---HTLTGHQSLTSGMELKDNILVS 334
Query: 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK- 601
+S + W+ G +T QG ++V+ + F+ K+ ++ + DD +K+WD+
Sbjct: 335 GNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG 392
Query: 602 --VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636
++ L T+++GG RI N L+ + + N
Sbjct: 393 EFIRNLVTLESGGSGGVVWRI-RASNTKLVCAVGSRN 428
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 875
+ ++ + P H N V ++ D D++I +++ + I L
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935
GH +G+ D NILVS D+ + +WD I+T + LQT G + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 936 FHKD 939
F+K+
Sbjct: 370 FNKN 373
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 99/253 (39%), Gaps = 54/253 (21%)
Query: 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490
H G V +S+ + +I+ D+T+KVW+A TG ++ GH + V + H K
Sbjct: 157 GHTGGV----WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR- 211
Query: 491 IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550
+ S S D ++ W D + + G +GRR+ S F+V
Sbjct: 212 ---VVSGSRDATLRVW--DIETGQCLHVLMGHVAAVRCVQYDGRRVVS-----GAYDFMV 261
Query: 551 E-WNESEGAIKRTYQG-----LQLQHNSVSVV--HFDTA--------------------- 581
+ W+ T QG LQ + + VV DT+
Sbjct: 262 KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL 321
Query: 582 ------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634
KD IL +G+ D +KIWD+ Q L T+ G ++ C N + ++
Sbjct: 322 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQ-GPNKHQSAVTCLQFNKNFVITSSD 380
Query: 635 ENRIKI--LETPE 645
+ +K+ L+T E
Sbjct: 381 DGTVKLWDLKTGE 393
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 64/149 (42%), Gaps = 15/149 (10%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+++ DD T+KVW AVTG + GH V+S ++NI I S S D +K W +
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWS--SQMRDNI--IISGSTDRTLKVWNAE 187
Query: 510 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569
+ + G T + +R+ S ++ L W+ G G
Sbjct: 188 T--GECIHTLYGHTSTVRCMHLHEKRVV----SGSRDATLRVWDIETGQCLHVLMG---H 238
Query: 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWD 598
+V V +D + +++ D ++K+WD
Sbjct: 239 VAAVRCVQYDGRR--VVSGAYDFMVKVWD 265
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 848 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
+N+I G D T+ ++NA + E I L GH+ V + + +VS DA + VWD+
Sbjct: 169 DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKR--VVSGSRDATLRVWDI 226
Query: 908 D 908
+
Sbjct: 227 E 227
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 46/94 (48%), Gaps = 8/94 (8%)
Query: 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 876
I ++ V T I T+ + + +N++ G DST+ I++ ++ + + L+G
Sbjct: 301 IRVWDVETGNCIHTLTGHQSLTSGMELK---DNILVSGNADSTVKIWDIKTGQCLQTLQG 357
Query: 877 ---HSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
H VT L F+ N +++S D + +WD+
Sbjct: 358 PNKHQSAVTCLQFNK--NFVITSSDDGTVKLWDL 389
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 6/62 (9%)
Query: 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWD 906
N I G DD+T+ +++A + + + L GH TG V+S + NI++S D + VW+
Sbjct: 130 NRIVSGSDDNTLKVWSAVTGKCLRTLVGH----TGGVWSSQMRDNIIISGSTDRTLKVWN 185
Query: 907 VD 908
+
Sbjct: 186 AE 187
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 442
+VR +V +S DG + + +Q++ G + LEI AH V AFS
Sbjct: 616 VVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAETG---EKLLEIKAHEDEVLCCAFS 672
Query: 443 APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 501
+ I+ TC DK +K+W+++TG ++++ H V + C + H + + S D
Sbjct: 673 TDDRFIA--TCSVDKKVKIWNSMTGELVHTYDEHSEQV-NCCHFTNSSHHLLLATGSSDC 729
Query: 502 KIKAW 506
+K W
Sbjct: 730 FLKLW 734
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 94/441 (21%), Positives = 158/441 (35%), Gaps = 78/441 (17%)
Query: 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587
+S +G+R+ SCG K + F E E IK + V F T I
Sbjct: 628 CFSEDGQRIASCGADKTLQVFKAETGEKLLEIKA-------HEDEVLCCAFSTDDRFIAT 680
Query: 588 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT---LLAVIANENRIKILETP 644
D +KIW+ +L+ T D E C N + LLA +++ +K+ +
Sbjct: 681 CSVDKKVKIWNSMTGELVHTYDEHS---EQVNCCHFTNSSHHLLLATGSSDCFLKLWDLN 737
Query: 645 E----------SNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVN--------E 684
+ +NSV+ D+ L S + + A AN S+N E
Sbjct: 738 QKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKLWDATSANERKSINVKQFFLNLE 797
Query: 685 DPKEDVK------------PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 732
DP+ED++ I V A+NK +F LL ++ S +
Sbjct: 798 DPQEDMEVIVKCCSWSADGARIMVAAKNK------IFLFDIHTSGLL--GEIHTGHHSTI 849
Query: 733 TYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT 788
Y + A+ AL+ V L R+ + + V ++ P G F+ +
Sbjct: 850 QYCDFSPQNHLAVVALSQYCVELWNTDSRSKVADCRGHLSWVHGVMFSPD-GSSFLT--S 906
Query: 789 TDSNSQEAVPCFALSKNDAYLFSASGGVI---SLYIVMTFKTILTIM-----------PP 834
+D + + KN A + V+ + +V+ I +
Sbjct: 907 SDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIRRLQLINGRTGQIDYLT 966
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ +PH IA G ++ I I ++ + H K V + F+ L+
Sbjct: 967 EAQVSCCCLSPH-LQYIAFGDENGAIEILELVNNRIFQSRFQHKKTVWHIQFTADEKTLI 1025
Query: 895 SSGGDAQIFVWDVDGWGIQTC 915
SS DA+I VW+ W + C
Sbjct: 1026 SSSDDAEIQVWN---WQLDKC 1043
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
D T+KVW+ +TG++ F H V S C + + F S S D K W +D L
Sbjct: 1070 DGTVKVWNIITGNKEKDFVCHQGTVLS-CDISHDATKF-SSTSADKTAKIWSFDLLLPLH 1127
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559
+ GC R + + L + G GE + WN S G +
Sbjct: 1128 ELRGHN-GCVRCSAFSVDSTLLATG-DDNGEIRI--WNVSNGEL 1167
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 91/231 (39%), Gaps = 28/231 (12%)
Query: 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489
D H VN F+ + + T D +K+WD + GH V + C + +
Sbjct: 702 DEHSEQVNCCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSV-NHCRFSPD 760
Query: 490 NIHFIFSISVDGKIKAWLYDSLGAR---------VDYDAPG------LGCTRMAYSANGR 534
+ + S S DG +K W S R ++ + P + C ++SA+G
Sbjct: 761 D-KLLASCSADGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCC--SWSADGA 817
Query: 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 594
R+ +K FL + + S G + + G H+++ F + A + +
Sbjct: 818 RIMVAAKNK---IFLFDIHTS-GLLGEIHTG---HHSTIQYCDFSPQNHLAVVALSQYCV 870
Query: 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645
++W+ + D G L + F+ +G+ +++ I++ ET +
Sbjct: 871 ELWNTDSRS--KVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKK 919
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 7/69 (10%)
Query: 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDAHVGNVNDLAFSAPCKQISVITCG 454
+SP L VA S++ V+L+ +D+R ++ + H+ V+ + FS S +T
Sbjct: 854 FSPQNHLAVVALSQYCVELW----NTDSRSKVADCRGHLSWVHGVMFSPDGS--SFLTSS 907
Query: 455 DDKTIKVWD 463
DD+TI++W+
Sbjct: 908 DDQTIRLWE 916
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 15/82 (18%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVISKL-----EG---HSKRVTGLVFSDALNILVSSGG 898
D+ ++A G D+ I I+N + E++ EG H VT L FS +L+S+GG
Sbjct: 1144 DSTLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFSPDGKMLISAGG 1203
Query: 899 DAQIFVWDVDGWGIQTCRSLQT 920
+ W + T S QT
Sbjct: 1204 -------YIKWWNVVTGESSQT 1218
Score = 29.6 bits (65), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 57/155 (36%), Gaps = 24/155 (15%)
Query: 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853
QE V F L KN L + G + ++ ++T + T S + HD +
Sbjct: 1050 QETVKDFRLLKNSRLLSWSFDGTVKVWNIITGNKEKDFVCHQGTVLSCDIS-HDATKFSS 1108
Query: 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD----- 908
D T I++ + +L GH+ V FS +L + + +I +W+V
Sbjct: 1109 TSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRIWNVSNGELL 1168
Query: 909 ---------------GWGIQTCRSLQTPDGVMTLA 928
GW C S PDG M ++
Sbjct: 1169 HLCAPLSEEGAATHGGWVTDLCFS---PDGKMLIS 1200
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486
L++ H G V L ++ +S T D+T++VWD G T+ FEGH + V L
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 487 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 532
+NI +I + S D + W G DY + P + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 533 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589
R + G S ++ L+ W+ ++ G + + +D + + ++A
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 590 DDHVIKIWDMNKVQLLTTIDAGGGL 614
D I+IWD+ +L+ T+ L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510
I+ D TI++WD G Y+ +GH A V L K F+ S + DG I+ W +
Sbjct: 326 ISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND 381
Query: 511 LGARVDYDAPGLGCTRMAYSAN 532
+ Y L Y ++
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILV
Sbjct: 122 TSVITCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILV 177
Query: 895 SSGGDAQIFVWDV 907
S D + VWD+
Sbjct: 178 SGSTDRTVRVWDI 190
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
N++ G D+T+++++ + + L GH+ R+ ++ +S+ D I +WD++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Score = 34.3 bits (77), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910
D+TI I++ + E++ L+GH+ V L SD LVS+ D I WD + +
Sbjct: 331 DTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
VIT DDK I+V+D++ GH V++L +A I + S S D ++ W
Sbjct: 135 VITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGI--LVSGSTDRTVRVW 188
Score = 31.2 bits (69), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 67/161 (41%), Gaps = 23/161 (14%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS-LCPHAKENIHFIFSISVDGKIKAWLY 508
V++ D T+ VWD Y GH +YS + H ++ S S+D I+ W
Sbjct: 283 VVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKR---CISASMDTTIRIW-- 337
Query: 509 DSLGARVDYDAPG----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
D + Y G +G R++ F + +G + W+ ++ + K +Y
Sbjct: 338 DLENGELMYTLQGHTALVGLLRLSDK------FLVSAAADGS--IRGWDANDYSRKFSY- 388
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605
H ++S + D IL +G ++ I+++ +L+
Sbjct: 389 ----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 425
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486
L++ H G V L ++ +S T D+T++VWD G T+ FEGH + V L
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 487 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 532
+NI +I + S D + W G DY + P + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 533 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589
R + G S ++ L+ W+ ++ G + + +D + + ++A
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 590 DDHVIKIWDMNKVQLLTTIDAGGGL 614
D I+IWD+ +L T+ L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510
I+ D TI++WD G Y+ +GH A V L K F+ S + DG I+ W +
Sbjct: 326 ISASXDTTIRIWDLENGELXYTLQGHTALVGLLRLSDK----FLVSAAADGSIRGWDAND 381
Query: 511 LGARVDYDAPGLGCTRMAYSAN 532
+ Y L Y ++
Sbjct: 382 YSRKFSYHHTNLSAITTFYVSD 403
Score = 37.7 bits (86), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894
+ T L F ++N + G DD I +Y++ + + + +L GH V L ++ ILV
Sbjct: 122 TSVITCLQF---EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILV 177
Query: 895 SSGGDAQIFVWDV 907
S D + VWD+
Sbjct: 178 SGSTDRTVRVWDI 190
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
N++ G D+T+++++ + + L GH+ R+ ++ +S+ D I +WD++
Sbjct: 281 NIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE 340
Score = 33.1 bits (74), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910
D+TI I++ + E+ L+GH+ V L SD LVS+ D I WD + +
Sbjct: 331 DTTIRIWDLENGELXYTLQGHTALVGLLRLSDKF--LVSAAADGSIRGWDANDY 382
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
VIT DDK I+V+D++ GH V++L +A I + S S D ++ W
Sbjct: 135 VITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL-KYAHGGI--LVSGSTDRTVRVW 188
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 66/161 (40%), Gaps = 23/161 (14%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS-LCPHAKENIHFIFSISVDGKIKAWLY 508
V++ D T+ VWD Y GH +YS + H ++ S S D I+ W
Sbjct: 283 VVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKR---CISASXDTTIRIW-- 337
Query: 509 DSLGARVDYDAPG----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564
D + Y G +G R++ F + +G + W+ ++ + K +Y
Sbjct: 338 DLENGELXYTLQGHTALVGLLRLSDK------FLVSAAADGS--IRGWDANDYSRKFSY- 388
Query: 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605
H ++S + D IL +G ++ I+++ +L+
Sbjct: 389 ----HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLV 425
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 840 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 899
S+ F+P D +A G +D I I++ + +++ L+GH + + L + + + LVS GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 900 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930
+ +WD+ Q +L DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 450
V VV S DG ++L+ G R+ + H +V +AFS +QI
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 451 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 506
++ D+TIK+W+ + + T S G G + C N I S S D +K W
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 507 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561
L +L Y + +A S +G S G K+G L W+ +EG K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599
Y L+ NSV + L A +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630
Score = 36.6 bits (83), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 83/201 (41%), Gaps = 23/201 (11%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-AR 514
D +++WD G T F GH V S+ + +N I S S D IK W ++LG +
Sbjct: 451 DGELRLWDLAAGVSTRRFVGHTKDVLSVA-FSLDNRQ-IVSASRDRTIKLW--NTLGECK 506
Query: 515 VDYDAPGLG------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
G G C R + + + S K + WN S ++ T G
Sbjct: 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKT----VKVWNLSNCKLRSTLAG--- 559
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
VS V + G D V+ +WD+ + + L +++A + +CF+ N
Sbjct: 560 HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHA---LCFSPNRYW 616
Query: 629 LAVIANENRIKILETPESNSV 649
L A E+ IKI + ES S+
Sbjct: 617 LCA-ATEHGIKIWDL-ESKSI 635
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
D T+ ++N + ++ S L GH+ V+ + S ++ S G D + +WD+
Sbjct: 540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL 590
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 59/137 (43%), Gaps = 25/137 (18%)
Query: 421 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480
S+ + + + H G V+ +A S P + + G D + +WD G + YS E + +
Sbjct: 549 SNCKLRSTLAGHTGYVSTVAVS-PDGSLCA-SGGKDGVVLLWDLAEGKKLYSLEANSV-I 605
Query: 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSL-------------GARVDYDAPG------ 521
++LC N +++ + + G IK W +S + D P
Sbjct: 606 HALC--FSPNRYWLCAATEHG-IKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKV 662
Query: 522 LGCTRMAYSANGRRLFS 538
+ CT + +SA+G LFS
Sbjct: 663 IYCTSLNWSADGSTLFS 679
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 818
L ++ ++ RL+ +G Q + D+ +A A S + YL + + G ++
Sbjct: 92 LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 819 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 878
++ V + K ++ S+A++P D +A G D I I++ + +++ LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 879 KRVTGLVFSDALNILVSSGGDAQIFVWDV 907
+ L FS +LV++ D I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 59/120 (49%), Gaps = 5/120 (4%)
Query: 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 855
+ A S + YL S + G+I+++ + T K + T+ + SL F+P D+ ++
Sbjct: 167 ILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP-DSQLLVTAS 225
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915
DD I IY+ + + + L GH+ V + F VSS D + VWDV G +TC
Sbjct: 226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDV---GTRTC 282
Score = 32.7 bits (73), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 41/104 (39%), Gaps = 23/104 (22%)
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------------------DKTIKVWDAV 465
Q L HVG VN + K+ S+ T G D I ++D
Sbjct: 135 QYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIA 194
Query: 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
TG ++ EGH P+ SL + + + S DG IK +YD
Sbjct: 195 TGKLLHTLEGHAMPIRSLT--FSPDSQLLVTASDDGYIK--IYD 234
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 9/166 (5%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
D I++WD G + S + PV + + ++ + + GK+ + +S
Sbjct: 101 DAHIRLWDLENGKQIKSIDA--GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEY 158
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSV 575
D G +AYS +G+ L S + + ++ + G + T +G + S++
Sbjct: 159 SLDTRGKFILSIAYSPDGKYLASGAI----DGIINIFDIATGKLLHTLEGHAMPIRSLT- 213
Query: 576 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621
F ++ A DD IKI+D+ L T+ N C
Sbjct: 214 --FSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFC 257
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 799 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 851
C+ L+ N A L ++ GG + I T K++L+ T +A++P N +
Sbjct: 19 CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 852 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
+ D +T I N E ++ LEGH V + ++ + N+L + D ++VW+VD
Sbjct: 78 SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135
Score = 35.4 bits (80), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 77/182 (42%), Gaps = 25/182 (13%)
Query: 520 PGLGCTRMAYSANGRRLFSCGTSK-------EGESFLVEWNESEGAIKRTYQGLQLQHNS 572
P C +A++ G L SCG + EG+S++ + SEG +
Sbjct: 15 PDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEG-----------HQRT 63
Query: 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTTIDAGGGLPENPRICFNKNGTLLA 630
V V + + + +A D IW N+ + +TT++ G E + + +G LLA
Sbjct: 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLE--GHENEVKSVAWAPSGNLLA 121
Query: 631 VIANENRIKILETPESNSVDAAGVL---SDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 687
+ + + + E E + + VL + +++ + +P + + + +V + + +
Sbjct: 122 TCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEE 181
Query: 688 ED 689
+D
Sbjct: 182 DD 183
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 450
V VVW P LL A V+LY D ++ H V LAF ++++
Sbjct: 153 VKHVVWHPSQELLASASYDDTVKLYREEE-DDWVCCATLEGHESTVWSLAFDPSGQRLA- 210
Query: 451 ITCGDDKTIKVW 462
+C DD+T+++W
Sbjct: 211 -SCSDDRTVRIW 221
Score = 34.7 bits (78), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 3/99 (3%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R ++W S + K+ L +V +V WSP G+ L A ++ + D
Sbjct: 38 RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN-QDDFE 96
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463
++ H V +A+ AP + + TC DK++ VW+
Sbjct: 97 CVTTLEGHENEVKSVAW-APSGNL-LATCSRDKSVWVWE 133
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/215 (26%), Positives = 94/215 (43%), Gaps = 28/215 (13%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PH 486
+ H V+DLA S + I+ DKT+++WD TG+ F GH + VYS+ P
Sbjct: 72 LTGHNHFVSDLALSQ--ENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPD 129
Query: 487 AKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAPGLGCTR---MAYSANGRRLF 537
++ I S + +IK W + LG A + + + C R + SAN + F
Sbjct: 130 NRQ----ILSAGAEREIKLW--NILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPF 183
Query: 538 SCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596
+ + G + L WN + I+ T++ + N +S+ I G D + I
Sbjct: 184 APYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSI---SPNGKYIATGGKDKKLLI 239
Query: 597 WD-MNKVQLLTTIDAGGGLPE---NPRICFNKNGT 627
WD +N DAG + + NP++ + GT
Sbjct: 240 WDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGT 274
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909
D T+ +++ R+ + GH V + FS ++S+G + +I +W++ G
Sbjct: 97 DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG 149
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 83/216 (38%), Gaps = 50/216 (23%)
Query: 365 RNFKVW--DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---- 418
RN VW D G+ S L +T D V V WS DGS L V +V +Y
Sbjct: 113 RNVYVWNADSGSVSALAET----DESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTK 168
Query: 419 ----GGSDAR------------------------------QQLEIDAHVGNVNDLAFSAP 444
G AR Q + H V LA+ +
Sbjct: 169 LRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSD 228
Query: 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGK 502
Q++ + G+D +++WDA + ++ H A V ++ CP + N+ ++D +
Sbjct: 229 GLQLA--SGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPW-QSNLLATGGGTMDKQ 285
Query: 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538
I W + GARV+ G T + +S + + + S
Sbjct: 286 IHFW-NAATGARVNTVDAGSQVTSLIWSPHSKEIMS 320
Score = 36.6 bits (83), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)
Query: 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISK 873
G++ +Y V + + T+ L++N H V++ G I ++ R ++ I
Sbjct: 156 GLVDIYDVESQTKLRTMAGHQARVGCLSWNRH---VLSSGSRSGAIHHHDVRIANHQIGT 212
Query: 874 LEGHSKRVTGLVF-SDALNILVSSGGDAQIFVWD 906
L+GHS V GL + SD L L S G D + +WD
Sbjct: 213 LQGHSSEVCGLAWRSDGLQ-LASGGNDNVVQIWD 245
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 54/121 (44%), Gaps = 4/121 (3%)
Query: 789 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 848
T + Q V C + +++ S SG + + + I T+ S LA+ D
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS-DG 229
Query: 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG---DAQIFVW 905
+A G +D+ + I++ARSS H+ V + + + L+++GG D QI W
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 906 D 906
+
Sbjct: 290 N 290
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/92 (22%), Positives = 46/92 (50%), Gaps = 12/92 (13%)
Query: 846 HDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDAL-NILVSSGGDA 900
H+N +IA +D+ ++ +Y+ + +++ HS V + F+ N+L S G +
Sbjct: 77 HNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNG 136
Query: 901 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932
+IF+WD++ + ++P L P ++
Sbjct: 137 EIFIWDMN-------KCTESPSNYTPLTPGQS 161
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
Query: 553 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNK 601
NE+ AI + +SV V F+ +D +LA+G ++ I IWDMNK
Sbjct: 97 NEANNAINSMAR-FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNK 145
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM---A 528
+ +GHG V LC ++ I S S DGK+ W DS ++ A + CT + A
Sbjct: 59 TLKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVW--DSFTTNKEH-AVTMPCTWVMACA 113
Query: 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588
Y+ +G + G + + + ++++E + + + + N +S F + QIL A
Sbjct: 114 YAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKK-KSVAMHTNYLSACSFTNSDMQILTA 172
Query: 589 GDDHVIKIWDMNKVQLLTTIDAGG 612
D +WD+ QLL + G
Sbjct: 173 SGDGTCALWDVESGQLLQSFHGHG 196
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 2/84 (2%)
Query: 423 ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482
A ++ + H ++ +F+ QI +T D T +WD +G SF GHGA V
Sbjct: 144 AAKKKSVAMHTNYLSACSFTNSDMQI--LTASGDGTCALWDVESGQLLQSFHGHGADVLC 201
Query: 483 LCPHAKENIHFIFSISVDGKIKAW 506
L E + S D K W
Sbjct: 202 LDLAPSETGNTFVSGGCDKKAMVW 225
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 20/164 (12%)
Query: 353 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI 411
LWD+N+G K K+ D A +A+V D V W SL G
Sbjct: 206 LWDINAGPK----EGKIVDAKAI-FTGHSAVVED-------VAWHLLHESLFGSVADDQK 253
Query: 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT 470
+ ++ + ++ +DAH VN L+F+ P + + T DKT+ +WD +
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 471 YSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
++FE H ++ + PH N + S D ++ W +G
Sbjct: 313 HTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIG 353
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 898
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 899 DAQIFVWDV 907
D ++ VWD+
Sbjct: 341 DRRLNVWDL 349
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+++ DD T+ +WD G + F GH A V + H F S++ D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 503 IKAWLYDSLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557
+ W S VD + C ++++ + + G++ + + W+
Sbjct: 254 LMIWDTRSNTTSKPSHLVDAHTAEVNC--LSFNPYSEFILATGSADKTVAL---WDLRN- 307
Query: 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKV-QLLTTIDAGGGLP 615
+K + + + VH+ + ILA+ G D + +WD++K+ + + DA G P
Sbjct: 308 -LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 616 E 616
E
Sbjct: 367 E 367
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 824 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 882
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 270 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 329
Query: 883 GLVFS-DALNILVSSGGDAQIFVWDV 907
+ +S IL SSG D ++ VWD+
Sbjct: 330 QVQWSPHNETILASSGTDRRLHVWDL 355
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 405
HT+ L WD+N+ K +V D TA+V D V W SL G
Sbjct: 208 HTICL--WDINATPK----EHRVIDAKNI-FTGHTAVVED-------VAWHLLHESLFGS 253
Query: 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465
+ ++ + ++ +DAH VN L+F+ P + + T DKT+ +WD
Sbjct: 254 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLR 312
Query: 466 TGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
+ +SFE H ++ + PH N + S D ++ W +G
Sbjct: 313 NLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIG 359
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 201 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 259
Query: 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 561
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 260 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 304
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 607
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 305 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 364
Query: 608 IDAGGGLPE 616
DA G PE
Sbjct: 365 EDAEDGPPE 373
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 824 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 882
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 266 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 325
Query: 883 GLVFS-DALNILVSSGGDAQIFVWDV 907
+ +S IL SSG D ++ VWD+
Sbjct: 326 QVQWSPHNETILASSGTDRRLHVWDL 351
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 405
HT+ L WD+N+ K +V D TA+V D V W SL G
Sbjct: 204 HTICL--WDINATPK----EHRVIDAKNI-FTGHTAVVED-------VAWHLLHESLFGS 249
Query: 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465
+ ++ + ++ +DAH VN L+F+ P + + T DKT+ +WD
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLR 308
Query: 466 TGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
+ +SFE H ++ + PH N + S D ++ W +G
Sbjct: 309 NLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIG 355
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 197 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 255
Query: 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 561
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 256 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 300
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 607
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 301 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 360
Query: 608 IDAGGGLPE 616
DA G PE
Sbjct: 361 EDAEDGPPE 369
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 824 TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVT 882
T K T+ + L+FNP+ ++A G D T+ +++ R+ ++ + E H +
Sbjct: 268 TSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIF 327
Query: 883 GLVFS-DALNILVSSGGDAQIFVWDV 907
+ +S IL SSG D ++ VWD+
Sbjct: 328 QVQWSPHNETILASSGTDRRLHVWDL 353
Score = 39.3 bits (90), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/170 (25%), Positives = 70/170 (41%), Gaps = 22/170 (12%)
Query: 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV 405
HT+ L WD+N+ K +V D TA+V D V W SL G
Sbjct: 206 HTICL--WDINATPK----EHRVIDAKNI-FTGHTAVVED-------VAWHLLHESLFGS 251
Query: 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465
+ ++ + ++ +DAH VN L+F+ P + + T DKT+ +WD
Sbjct: 252 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLR 310
Query: 466 TGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
+ +SFE H ++ + PH N + S D ++ W +G
Sbjct: 311 NLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLHVWDLSKIG 357
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 77/189 (40%), Gaps = 38/189 (20%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+++ DD TI +WD + + F GH A V + H F S++ D K
Sbjct: 199 LLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLF-GSVADDQK 257
Query: 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKR 561
+ W D ++ +++ + +C + F++ + G+ +
Sbjct: 258 LMIW-----------DTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFIL----ATGSADK 302
Query: 562 TYQGLQLQHNSVSVVHFDTAKDQIL-------------AAGDDHVIKIWDMNKV-QLLTT 607
T L++ + + F++ KD+I ++G D + +WD++K+ + +T
Sbjct: 303 TVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST 362
Query: 608 IDAGGGLPE 616
DA G PE
Sbjct: 363 EDAEDGPPE 371
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 54/115 (46%), Gaps = 5/115 (4%)
Query: 797 VPCFALS--KNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIA 852
V C A S K+ +L + I L+ K I +P TSLA++P + V
Sbjct: 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFV 231
Query: 853 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWD 906
G ++ T+ + + +S+ + HS+ VTGLVFS ++ L S D + V D
Sbjct: 232 FGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLD 286
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 804 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863
+++ ++F G +SL + +L+ S T L F+PH +A +D ++ +
Sbjct: 226 QSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVL 285
Query: 864 NARSSEVISKLEGHSKRVTGLVFSDALN--ILVSSGGDAQI 902
++ SE+ + + H V +S LN +L + G D Q+
Sbjct: 286 DSSLSELF-RSQAHRDFVRDATWS-PLNHSLLTTVGWDHQV 324
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 69/164 (42%), Gaps = 20/164 (12%)
Query: 353 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI 411
LWD+N+G K K+ D A +A+V D V W SL G
Sbjct: 206 LWDINAGPK----EGKIVDAKAI-FTGHSAVVED-------VAWHLLHESLFGSVADDQK 253
Query: 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RT 470
+ ++ + ++ +DAH VN L+F+ P + + T DKT+ +WD +
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNCLSFN-PYSEFILATGSADKTVALWDLRNLKLKL 312
Query: 471 YSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
++FE H ++ + PH N + S D ++ W +G
Sbjct: 313 HTFESHKDEIFQVHWSPH---NETILASSGTDRRLNVWDLSKIG 353
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 898
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 281 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGT 340
Query: 899 DAQIFVWDV 907
D ++ VWD+
Sbjct: 341 DRRLNVWDL 349
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 75/181 (41%), Gaps = 22/181 (12%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYS-------FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
+++ DD T+ +WD G + F GH A V + H F S++ D K
Sbjct: 195 LLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLF-GSVADDQK 253
Query: 503 IKAWLYDSLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557
+ W S VD + C ++++ + + G++ + + W+
Sbjct: 254 LXIWDTRSNTTSKPSHLVDAHTAEVNC--LSFNPYSEFILATGSA---DKTVALWDLRN- 307
Query: 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKV-QLLTTIDAGGGLP 615
+K + + + VH+ + ILA+ G D + +WD++K+ + + DA G P
Sbjct: 308 -LKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPP 366
Query: 616 E 616
E
Sbjct: 367 E 367
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Query: 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460
SL G + ++ + ++ +DAH VN L+F+ P + + T DKT+
Sbjct: 241 SLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN-PYSEFILATGSADKTVA 299
Query: 461 VWDAVTGS-RTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLG 512
+WD + +SFE H ++ + PH N + S D ++ W +G
Sbjct: 300 LWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETILASSGTDRRLNVWDLSKIG 351
Score = 38.1 bits (87), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFS-DALNILVSSGG 898
L+FNP+ ++A G D T+ +++ R+ ++ + E H + + +S IL SSG
Sbjct: 279 LSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT 338
Query: 899 DAQIFVWDV 907
D ++ VWD+
Sbjct: 339 DRRLNVWDL 347
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 38.9 bits (89), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 8/96 (8%)
Query: 820 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVIS 872
Y T +L S+A+ PH +++A G DST+ I+ S ++++
Sbjct: 43 YDDFTLIDVLDETAHKKAIRSVAWRPH-TSLLAAGSFDSTVSIWAKEESADRTFEMDLLA 101
Query: 873 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
+EGH V G+ +S+ L + D +++W+ D
Sbjct: 102 IIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETD 137
Score = 32.7 bits (73), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 28/125 (22%), Positives = 51/125 (40%), Gaps = 12/125 (9%)
Query: 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAPC 445
++ V W P SLL V ++A +D +++ I+ H V +A+S
Sbjct: 60 AIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDG 119
Query: 446 KQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAPVYSLCPHAKENIHFIFSISVDG 501
++ TC DK++ +W+ Y + H V + H E + + S S D
Sbjct: 120 YYLA--TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEAL--LASSSYDD 175
Query: 502 KIKAW 506
++ W
Sbjct: 176 TVRIW 180
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 687
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 688 --EDVKPEIS 695
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 548 FLVEWN 553
L WN
Sbjct: 221 ML--WN 224
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 687
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 688 --EDVKPEIS 695
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 548 FLVEWN 553
L WN
Sbjct: 221 ML--WN 224
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 38.5 bits (88), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 81/193 (41%), Gaps = 20/193 (10%)
Query: 428 EIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVW----DAVTGSRTYSF-----EGHG 477
++ H G V LA P V++ DKT+ W D + +Y EGH
Sbjct: 8 QLTGHRGWVTSLACPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEGHS 67
Query: 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537
A V + N +F S S D ++ W + + + +A+S + R++
Sbjct: 68 AFVSDVA--LSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIV 125
Query: 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDHVIK 595
S G ++ L WN + +G + VS V F + D I++ G D+++K
Sbjct: 126 SGGR----DNALRVWNVKGECMHTLSRGAHT--DWVSCVRFSPSLDAPVIVSGGWDNLVK 179
Query: 596 IWDMNKVQLLTTI 608
+WD+ +L+T +
Sbjct: 180 VWDLATGRLVTDL 192
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909
D ++ ++N ++ + K GH+K V + FS +VS G D + VW+V G
Sbjct: 88 DHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKG 140
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/209 (20%), Positives = 85/209 (40%), Gaps = 8/209 (3%)
Query: 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 453
V +SPD + + ++++ G + L AH V+ + FS +++
Sbjct: 115 VAFSPDNRQIVSGGRDNALRVWNVKG--ECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSG 172
Query: 454 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 513
G D +KVWD TG +GH V S+ + S DG + W + G
Sbjct: 173 GWDNLVKVWDLATGRLVTDLKGHTNYVTSVT--VSPDGSLCASSDKDGVARLWDL-TKGE 229
Query: 514 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNS 572
+ A G ++ +S N R + C +++G F +E + + +QG +
Sbjct: 230 ALSEMAAGAPINQICFSPN--RYWMCAATEKGIRIFDLENKDIIVELAPEHQGSKKIVPE 287
Query: 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNK 601
+ + + + D+VI++W +++
Sbjct: 288 CVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 839 TSLAFNPH-DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
+ + F+P D VI G D+ + +++ + +++ L+GH+ VT + S ++ SS
Sbjct: 156 SCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSD 215
Query: 898 GDAQIFVWDV 907
D +WD+
Sbjct: 216 KDGVARLWDL 225
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 80 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 128
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 129 ------------------------------------------TIKGQCLATLLGHNDWVS 146
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 147 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 204
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 687
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 205 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 263
Query: 688 --EDVKPEIS 695
+D++PE +
Sbjct: 264 LVDDLRPEFA 273
Score = 33.1 bits (74), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 98 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 156
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 157 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 214
Query: 548 FLVEWN 553
L WN
Sbjct: 215 ML--WN 218
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 38.5 bits (88), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 805 NDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863
+D Y+ SASG I ++ T + + T+ L + + ++ G D+TI ++
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR---DRLVVSGSSDNTIRLW 321
Query: 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
+ + LEGH + V + F + +VS D +I VWD+
Sbjct: 322 DIECGACLRVLEGHEELVRCIRFDNKR--IVSGAYDGKIKVWDL 363
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
D+ I D TI ++N + E + L GH + + L + D L +VS D I +WD
Sbjct: 265 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRL--VVSGSSDNTIRLWD 322
Query: 907 VD 908
++
Sbjct: 323 IE 324
Score = 37.7 bits (86), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 39/86 (45%), Gaps = 8/86 (9%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
V++ D TI++WD G+ EGH V + K I S + DGKIK W
Sbjct: 309 VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKR----IVSGAYDGKIKVW--- 361
Query: 510 SLGARVDYDAP-GLGCTRMAYSANGR 534
L A +D AP G C R +GR
Sbjct: 362 DLVAALDPRAPAGTLCLRTLVEHSGR 387
Score = 37.0 bits (84), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 890
I S T+ + +D+ I G+ D+TI I++ + E L GH+ V L + +
Sbjct: 126 IHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE-- 183
Query: 891 NILVSSGGDAQIFVWDVD 908
++++ D+ + VWDV+
Sbjct: 184 RVIITGSSDSTVRVWDVN 201
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 52/230 (22%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488
+ H G+V L + + +IT D T++VWD TG + H V H +
Sbjct: 169 LTGHTGSVLCLQYD----ERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVL----HLR 220
Query: 489 ENIHFIFSISVDGKIKAWLYDS----------LGAR-----VDYDAPGLGCTRMAYSANG 533
N + + S D I W S +G R VD+D +
Sbjct: 221 FNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYI----------- 269
Query: 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDH 592
S G+ + WN S RT G ++ + + +D+++ +G D+
Sbjct: 270 -------VSASGDRTIKVWNTSTCEFVRTLNG---HKRGIACLQY---RDRLVVSGSSDN 316
Query: 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642
I++WD+ L ++ G E R C + + A + +IK+ +
Sbjct: 317 TIRLWDIECGACLRVLE---GHEELVR-CIRFDNKRIVSGAYDGKIKVWD 362
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 687
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 688 --EDVKPEIS 695
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 607
L WN A K+ L Q S+ + LAA IK++ ++ L+
Sbjct: 221 ML--WNL---AAKKAMYTLSAQDEVFSLAF--SPNRYWLAAATATGIKVFSLDPQYLVDD 273
Query: 608 ID------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 647
+ + P + ++ +G L +N I++ + +N
Sbjct: 274 LRPEFAGYSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
D + DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 510 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 569 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 610
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
D + DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 197 DKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 510 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 569 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 610
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 38.1 bits (87), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 90/250 (36%), Gaps = 66/250 (26%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K ++ I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM--IISGSRDKTIKVW--------- 134
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D ++K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK- 687
+A + I + ++ D + L+ +P A A G + DP+
Sbjct: 211 IASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWLAAATATGIKVFSLDPQY 269
Query: 688 --EDVKPEIS 695
+D++PE +
Sbjct: 270 LVDDLRPEFA 279
Score = 33.1 bits (74), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 10/126 (7%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S+I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVMSVDIDKKASMIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 548 FLVEWN 553
L WN
Sbjct: 221 ML--WN 224
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 99/244 (40%), Gaps = 37/244 (15%)
Query: 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR----QQLEIDAHVGNVNDLAFSAPCK 446
V+ V ++PDGSL + LY G+ L+ AH G+V L +S
Sbjct: 193 VHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGT 252
Query: 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI----HFIFSISVDGK 502
+I+ + DKTIK+W+ T + PV + + I + SIS +G
Sbjct: 253 KIA--SASADKTIKIWNVATLKVEKTI-----PVGTRIEDQQLGIIWTKQALVSISANGF 305
Query: 503 IKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560
I ++ LG+ +V Y T ++ SA+G+ LFS + E + W+ S G
Sbjct: 306 IN-FVNPELGSIDQVRY-GHNKAITALSSSADGKTLFSA----DAEGHINSWDISTGISN 359
Query: 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620
R + + ++ + + D + DDH L + AGG ++ +
Sbjct: 360 RVFP--DVHATMITGIKTTSKGDLFTVSWDDH------------LKVVPAGGSGVDSSKA 405
Query: 621 CFNK 624
NK
Sbjct: 406 VANK 409
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 840 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 899
S+ F P I G DD+T+ I+ + S H+K V + ++ ++ S+GGD
Sbjct: 152 SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD 211
Query: 900 AQIFVWD-VDG 909
I +++ VDG
Sbjct: 212 GTIVLYNGVDG 222
Score = 30.0 bits (66), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 840 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNI 892
S+ +NP D ++ A D TI++YN E HS V GL +S
Sbjct: 195 SVRYNP-DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTK 253
Query: 893 LVSSGGDAQIFVWDV 907
+ S+ D I +W+V
Sbjct: 254 IASASADKTIKIWNV 268
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 49/170 (28%), Positives = 69/170 (40%), Gaps = 23/170 (13%)
Query: 431 AHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489
H GNV L+F Q V+ G DKT KVW GS Y+ + H A V+ +
Sbjct: 102 GHQGNVCSLSF-----QDGVVISGSWDKTAKVWKE--GSLVYNLQAHNASVWDAKVVSFS 154
Query: 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGES 547
F+ + S D IK W D +V G+ R + SC S +G
Sbjct: 155 ENKFL-TASADKTIKLWQND----KVIKTFSGIHNDVVRHLAVVDDGHFISC--SNDGLI 207
Query: 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597
LV+ G + RTY+G H S I++ G+D ++IW
Sbjct: 208 KLVD--XHTGDVLRTYEG----HESFVYCIKLLPNGDIVSCGEDRTVRIW 251
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 510 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 569 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 610
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
+IT DD TIK+WD T S + EGH + V H + I S S DG +K W
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHP--TLPIIISGSEDGTLKIW 255
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906
DD TI I++ ++ ++ LEGH V+ VF L I++S D + +W+
Sbjct: 206 DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 68/164 (41%), Gaps = 10/164 (6%)
Query: 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
+I DD I+V++ TG + FE H + S+ H + ++ S S D +K W ++
Sbjct: 70 IIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTK--PYVLSGSDDLTVKLWNWE 127
Query: 510 SLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ A ++ +A++ F+ G + + W S G +
Sbjct: 128 NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL---DRTVKVW--SLGQSTPNFTLTTG 182
Query: 569 QHNSVSVVHFDTAKDQ--ILAAGDDHVIKIWDMNKVQLLTTIDA 610
Q V+ V + D+ ++ A DD IKIWD + T++
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEG 226
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR 424
R KVW +G + F ++ GV+ PD + A ++++ Y S
Sbjct: 163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVA 222
Query: 425 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466
++ H+ NV+ F P I +I+ +D T+K+W++ T
Sbjct: 223 T---LEGHMSNVSFAVFH-PTLPI-IISGSEDGTLKIWNSST 259
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.0 bits (84), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 22/48 (45%)
Query: 858 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
STI +Y S E I+ L+GH K V VF L S D I W
Sbjct: 314 STIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAW 361
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 16/112 (14%)
Query: 566 LQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQ-LLTTIDAGGG---------- 613
LQ + V + D ILA A D +K+WD+ + L T+D G
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 614 LPENPRI---CFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRK 661
N ++ CF +G L + +NR+++ + N++ G + +N +K
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKK 293
Score = 31.6 bits (70), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490
AH G VN L F++ + ++T G D +++W++ G T G +C ++K+
Sbjct: 243 AHNGKVNGLCFTS--DGLHLLTVGTDNRMRLWNSSNGENTLVNYG------KVCNNSKKG 294
Query: 491 IHFIFSI 497
+ F S
Sbjct: 295 LKFTVSC 301
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 795 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 159 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 215
Query: 854 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 216 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 268
Score = 33.1 bits (74), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 840 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 292 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 350
Query: 898 GDA--QIFVW 905
G A Q+ +W
Sbjct: 351 GFAQNQLVIW 360
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 795 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 148 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 204
Query: 854 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 205 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 257
Score = 33.1 bits (74), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 840 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 281 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 339
Query: 898 GDA--QIFVW 905
G A Q+ +W
Sbjct: 340 GFAQNQLVIW 349
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 35.8 bits (81), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 59/252 (23%), Positives = 89/252 (35%), Gaps = 70/252 (27%)
Query: 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515
DKT+++WD TG F GH + V S+ K + I S S D IK W
Sbjct: 86 DKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX--IISGSRDKTIKVW--------- 134
Query: 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---- 571
IK L HN
Sbjct: 135 ------------------------------------------TIKGQCLATLLGHNDWVS 152
Query: 572 SVSVVHFDTAKDQ---ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
V VV + A D I++AG+D +K W++N+ Q+ D G + + +GTL
Sbjct: 153 QVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTL 210
Query: 629 LAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNEDP 686
+A + I + A LS D + L+ +P A A G + DP
Sbjct: 211 IASAGKDGEIXLWNLAAKK---AXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDP 267
Query: 687 K---EDVKPEIS 695
+ +D++PE +
Sbjct: 268 QYLVDDLRPEFA 279
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 54/126 (42%), Gaps = 10/126 (7%)
Query: 433 VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKE 489
VG+ +D+ K+ S I G DKTIKVW + G + GH V + P+ K
Sbjct: 104 VGHKSDVXSVDIDKKASXIISGSRDKTIKVW-TIKGQCLATLLGHNDWVSQVRVVPNEKA 162
Query: 490 NIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547
+ + IS D +KAW + D+ + S +G + S G K+GE
Sbjct: 163 DDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAG--KDGEI 220
Query: 548 FLVEWN 553
L WN
Sbjct: 221 XL--WN 224
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 847 DNNVIAIGMDDSTILIYNA-RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
+ +++A G D+ I IY+ R ++I L H V L++ + + LVSSG DA I W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
Query: 906 DV 907
+V
Sbjct: 611 NV 612
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS---- 896
+ F+P + D I ++ +S E + +E + V G +F AL+ L S
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF--ALSWLDSQKFAT 269
Query: 897 -GGDAQIFVWDV 907
G DA I VWDV
Sbjct: 270 VGADATIRVWDV 281
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 35.0 bits (79), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 421 SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479
S+ Q EID AHV + L F P + ++I+ D +K+W GS + GH A
Sbjct: 123 SNFNLQREIDQAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRAT 180
Query: 480 VYSLCPHAKENIHFIFSISVDGKIKAW 506
V + + + S S+DG I+ W
Sbjct: 181 VTDIAIIDRG--RNVLSASLDGTIRLW 205
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 847 DNNVIAIGMDDSTILIYNA-RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
+ +++A G D+ I IY+ R ++I L H V L++ + + LVSSG DA I W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLW-ETPSTLVSSGADACIKRW 610
Query: 906 DV 907
+V
Sbjct: 611 NV 612
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS---- 896
+ F+P + D I ++ +S E + +E + V G +F AL+ L S
Sbjct: 212 VEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIF--ALSWLDSQKFAT 269
Query: 897 -GGDAQIFVWDV 907
G DA I VWDV
Sbjct: 270 VGADATIRVWDV 281
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
+ +I++ +D T+ Y EV+ + GH+K +T L +N L+S D +I W
Sbjct: 309 NGRIISLSLD-GTLNFYELGHDEVLKTISGHNKGITAL----TVNPLISGSYDGRIMEW 362
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 50/113 (44%), Gaps = 5/113 (4%)
Query: 795 EAVPCFALSKNDAYL-FSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853
E + A K YL S + L+ V K + + S SL++N + +++
Sbjct: 68 EYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSY---ILSS 124
Query: 854 GMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905
G I ++ R +E ++ L GHS+ V GL ++ L S G D + VW
Sbjct: 125 GSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVW 177
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
Query: 840 SLAFNPHDNNVIAIG--MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897
++A+ P +NV+A G D I I+N S +S ++ HS+ V +++S L+S
Sbjct: 201 AVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ-VCSILWSPHYKELISGH 259
Query: 898 GDA--QIFVW 905
G A Q+ +W
Sbjct: 260 GFAQNQLVIW 269
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 34.7 bits (78), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 426 QLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484
Q EID AHV + L F P + ++I+ D +K+W GS + GH A V +
Sbjct: 131 QREIDQAHVSEITKLKF-FPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIA 188
Query: 485 PHAKENIHFIFSISVDGKIKAW 506
+ + S S+DG I+ W
Sbjct: 189 --IIDRGRNVLSASLDGTIRLW 208
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 33.9 bits (76), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 179 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 235
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 811 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 127 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 186
Query: 871 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
++ +EGH V + ++S G D + +W ++
Sbjct: 187 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 227
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 33.5 bits (75), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 811 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 871 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
++ +EGH V + ++S G D + +W ++
Sbjct: 150 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 33.5 bits (75), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 142 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 198
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 811 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 90 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 149
Query: 871 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
++ +EGH V + ++S G D + +W ++
Sbjct: 150 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 190
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 143 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 199
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 811 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 150
Query: 871 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
++ +EGH V + ++S G D + +W ++
Sbjct: 151 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 191
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 33.5 bits (75), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/57 (22%), Positives = 29/57 (50%)
Query: 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608
WN + + G++ + V +D ++I++ G DH +K+W +N +++ I
Sbjct: 138 WNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAI 194
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/101 (19%), Positives = 45/101 (44%), Gaps = 3/101 (2%)
Query: 811 SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870
+ S G+I + +T + I + L F+P D N++ D + ++N ++ +
Sbjct: 86 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL 145
Query: 871 IS---KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908
++ +EGH V + ++S G D + +W ++
Sbjct: 146 VAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRIN 186
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 818 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST---ILIYNARSSEVISKL 874
+L + F++ +++ S + S+ F+P +++AI D ++ I +Y E I L
Sbjct: 226 TLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSL 284
Query: 875 E-------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
HS V L F+D+ L S+G D ++ WDV
Sbjct: 285 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 330
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 33.1 bits (74), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490
H G ++ L F+ K + ++ DD T+++W G+ F GH + S +
Sbjct: 245 GHHGPISVLEFNDTNKLL--LSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDK 302
Query: 491 IHFIFSISVDGKIKAW 506
+ S S+DG ++ W
Sbjct: 303 ---VISCSMDGSVRLW 315
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/150 (20%), Positives = 57/150 (38%), Gaps = 9/150 (6%)
Query: 860 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 919
I +Y KL GH ++ L F+D +L+S+ D + +W Q C
Sbjct: 229 IFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNC---- 284
Query: 920 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS 979
+ S + D + + ++ ++ T L + VPI S
Sbjct: 285 ----FYGHSQSIVSASWVGDDKVISCSMDGSVRLWSLKQNTLLALSI-VDGVPIFAGRIS 339
Query: 980 CDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009
D + +F+DG +++++ L + R L
Sbjct: 340 QDGQKYAVAFMDGQVNVYDLKKLNSKSRSL 369
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 33.1 bits (74), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 818 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST---ILIYNARSSEVISKL 874
+L + F++ +++ S + S+ F+P +++AI D ++ I +Y E I L
Sbjct: 216 TLRPLYNFESQHSMINNSNSIRSVKFSPQ-GSLLAIAHDSNSFGCITLYETEFGERIGSL 274
Query: 875 E-------------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907
HS V L F+D+ L S+G D ++ WDV
Sbjct: 275 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV 320
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 33.1 bits (74), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 7/83 (8%)
Query: 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-----EGHGAPVYSL 483
+ H G + + P ++ +IT D+T +WD TG R F GH A V SL
Sbjct: 153 LTGHKGYASSCQY-VPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSL 211
Query: 484 CPHAKENIHFIFSISVDGKIKAW 506
++ N + S S D ++ W
Sbjct: 212 SINSL-NANMFISGSCDTTVRLW 233
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 32.7 bits (73), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 538
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 152 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211
Query: 539 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 590
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 640
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 272 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322
Score = 30.4 bits (67), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 819 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 876
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
Query: 877 HSKRVTGLVFS 887
+TGL F+
Sbjct: 163 AGGSITGLKFN 173
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 32.7 bits (73), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 538
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 152 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 211
Query: 539 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 590
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 212 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 271
Query: 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 640
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 272 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 322
Score = 30.8 bits (68), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 819 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 876
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 103 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 162
Query: 877 HSKRVTGLVFS 887
+TGL F+
Sbjct: 163 AGGSITGLKFN 173
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 22/173 (12%)
Query: 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA-YSANGRRLFS-------- 538
K+ FI I G I ++ L Y + G TR+ + N R+F+
Sbjct: 153 KDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIW 212
Query: 539 -CGTSKEGESFLVEWNESEGAI------KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGD 590
C S +V ++ G + + L++ V+ V + D LA A
Sbjct: 213 FCSLDVSASSRMVVTGDNVGNVILLNMDGKELWNLRMHKKKVTHVALNPCCDWFLATASV 272
Query: 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRI---CFNKNGTLLAVIANENRIKI 640
D +KIWD+ +V+ + LP + CF+ +G L ++ I++
Sbjct: 273 DQTVKIWDLRQVRGKASFLY--SLPHRHPVNAACFSPDGARLLTTDQKSEIRV 323
Score = 30.8 bits (68), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 819 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN--ARSSEVISKLEG 876
L+ + +++ + P ATSLA++P + +A+G I+++N + K G
Sbjct: 104 LHTLDSYRILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIG 163
Query: 877 HSKRVTGLVFS 887
+TGL F+
Sbjct: 164 AGGSITGLKFN 174
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 904
D IAI ++ + IY ++ + +L+ H+ +VTG+ ++ N +V+ G D +V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGIDWAPDSNRIVTCGTDRNAYV 78
Query: 905 WDVDG 909
W + G
Sbjct: 79 WTLKG 83
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 455
W+ D + + + + H V +Y G+ Q E+ H G V + ++ +I +TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGIDWAPDSNRI--VTCGT 72
Query: 456 DKTIKVW 462
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 847 DNNVIAIGMDDSTILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 904
D IAI ++ + IY ++ + +L+ H+ +VTG+ ++ N +V+ G D +V
Sbjct: 19 DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYV 78
Query: 905 WDVDG 909
W + G
Sbjct: 79 WTLKG 83
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 455
W+ D + + + + H V +Y G+ Q E+ H G V + ++ +I +TCG
Sbjct: 16 WNKDRTQIAICPNNHEVHIYE-KSGNKWVQVHELKEHNGQVTGVDWAPDSNRI--VTCGT 72
Query: 456 DKTIKVW 462
D+ VW
Sbjct: 73 DRNAYVW 79
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 804 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863
K+D + G +SL + + T S T LA++ H + +A +D T+ +
Sbjct: 238 KDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVL 297
Query: 864 NARSSEVISKLEGHSKRVTGLVFS 887
+A SEV L H VTG+ +S
Sbjct: 298 DADFSEVFRDLS-HRDFVTGVAWS 320
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
Query: 536 LFSCGTS--KEGESFLVE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDD 591
+FS GT G+ F V+ W+ S+ A+ ++Y + N V+ KD I L+ G+D
Sbjct: 147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAAC---PGKDTIFLSCGED 203
Query: 592 HVIKIWDMNKVQLLTTID 609
I +WD K + T ID
Sbjct: 204 GRILLWDTRKPKPATRID 221
Score = 30.0 bits (66), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
Query: 451 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAW-- 506
++ G D ++KVWD + S+ H + V + CP K+ I S DG+I W
Sbjct: 155 VSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACP-GKDTI--FLSCGEDGRILLWDT 211
Query: 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540
R+D+ A T + + F+CG
Sbjct: 212 RKPKPATRIDFCASDTIPTSVTWHPEKDDTFACG 245
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 31.6 bits (70), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 20/105 (19%)
Query: 390 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 445
SVN V W+P G LL VA S V + + + IDAH VN ++ AP
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII-IDAHAIGVNSASW-APATI 158
Query: 446 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 476
+ +T G D +K+W + ++TY + EGH
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 6/80 (7%)
Query: 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSL-CPH 486
+AH ++D K+++ TC DKTIK++ + T + GH PV+ + H
Sbjct: 6 NAHNELIHDAVLDYYGKRLA--TCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAH 63
Query: 487 AKENIHFIFSISVDGKIKAW 506
K + S S DGK+ W
Sbjct: 64 PKFGT-ILASCSYDGKVLIW 82
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 3/75 (4%)
Query: 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491
H G V D+ +S ++ +C DKT K+WD ++ ++ H APV ++ N
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASC--DKTAKMWD-LSSNQAIQIAQHDAPVKTIHWIKAPNY 141
Query: 492 HFIFSISVDGKIKAW 506
+ + S D +K W
Sbjct: 142 SCVMTGSWDKTLKFW 156
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 40/294 (13%)
Query: 410 HIVQLYAYHGGSDARQQLEI---------DAHVGNVNDLAFSAPCKQISVITC------- 453
H+ ++YA H G+D+R L D++ N + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGN 110
Query: 454 -----GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
G D +++ T G+ S E G Y C ++ + S G
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCA 167
Query: 507 LYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565
L+D + G M+ S A RLF G W+ EG ++T+ G
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG 224
Query: 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625
+ ++ + F + DD +++D+ Q L T + + F+K+
Sbjct: 225 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 626 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
G LL ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 282 GRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|3LOQ|A Chain A, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
pdb|3LOQ|B Chain B, The Crystal Structure Of A Universal Stress Protein From
Archaeoglobus Fulgidus Dsm 4304
Length = 294
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 12/96 (12%)
Query: 622 FNKNGTLLAVIANENRIKILETP---ESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIAN 677
F N LL +EN K+LE + V+ GVL NL KL STV+G +
Sbjct: 20 FQSNAXLLPTDLSENSFKVLEYLGDFKKVGVEEIGVLFVINLTKL-----STVSGGIDID 74
Query: 678 GSVSVNEDPKEDVKPEISVEAEN---KSEVEKPLFA 710
+ + E+V PE++ + E K+EV KP A
Sbjct: 75 HYIDEXSEKAEEVLPEVAQKIEAAGIKAEVIKPFPA 110
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.8 bits (68), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 444 PCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGK 502
P +Q V T G D + +WD G+ S + H A ++ + H H +F+ S DG
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEH-LFTCSEDGS 304
Query: 503 IKAW 506
+ W
Sbjct: 305 LWHW 308
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 63/294 (21%), Positives = 112/294 (38%), Gaps = 40/294 (13%)
Query: 410 HIVQLYAYHGGSDARQQLEI---------DAHVGNVNDLAFSAPCKQISVITC------- 453
H+ ++YA H G+D+R L D++ N + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNK---VHAIPLRSSWVMTCAYAPSGN 110
Query: 454 -----GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506
G D +++ T G+ S E G Y C ++ + S G
Sbjct: 111 YVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCA 167
Query: 507 LYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565
L+D + G M+ S A RLF G W+ EG ++T+ G
Sbjct: 168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG 224
Query: 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625
+ ++ + F + DD +++D+ Q L T + + F+K+
Sbjct: 225 ---HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS 281
Query: 626 GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
G LL ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 282 GRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 30.8 bits (68), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 390 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 445
SVN V W+P G LL VA S V + + + + IDAH VN ++ AP
Sbjct: 103 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASW-APATI 160
Query: 446 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 476
+ +T G D +K+W + ++TY + EGH
Sbjct: 161 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 205
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 20/105 (19%)
Query: 390 SVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC-- 445
SVN V W+P G LL VA S V + + + + IDAH VN ++ AP
Sbjct: 101 SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKE-NGTTSPIIIDAHAIGVNSASW-APATI 158
Query: 446 ----------KQISVITCGDDKTIKVWDAVTGSRTY----SFEGH 476
+ +T G D +K+W + ++TY + EGH
Sbjct: 159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH 203
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 34/291 (11%)
Query: 410 HIVQLYAYHGGSDAR------QQLEIDAHVGNVNDLAFSAPCKQISVITC---------- 453
H+ ++YA H G+D+R Q ++ + + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 454 --GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
G D +++ T G+ S E G Y C ++ + S G L+D
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWD 170
Query: 510 SLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ G M+ S A RLF G W+ EG ++T+ G
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG--- 224
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
+ ++ + F + DD +++D+ Q L T + + F+K+G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
L ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 34/291 (11%)
Query: 410 HIVQLYAYHGGSDAR------QQLEIDAHVGNVNDLAFSAPCKQISVITC---------- 453
H+ ++YA H G+D+R Q ++ + + P + V+TC
Sbjct: 54 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 113
Query: 454 --GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
G D +++ T G+ S E G Y C ++ + S G L+D
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWD 170
Query: 510 SLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ G M+ S A RLF G W+ EG ++T+ G
Sbjct: 171 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG--- 224
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
+ ++ + F + DD +++D+ Q L T + + F+K+G L
Sbjct: 225 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 284
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
L ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 285 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 331
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 29.6 bits (65), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 61/291 (20%), Positives = 111/291 (38%), Gaps = 34/291 (11%)
Query: 410 HIVQLYAYHGGSDAR------QQLEIDAHVGNVNDLAFSAPCKQISVITC---------- 453
H+ ++YA H G+D+R Q ++ + + P + V+TC
Sbjct: 65 HLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVA 124
Query: 454 --GDDKTIKVWDAVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509
G D +++ T G+ S E G Y C ++ + S G L+D
Sbjct: 125 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS---SGDTTCALWD 181
Query: 510 SLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568
+ G M+ S A RLF G W+ EG ++T+ G
Sbjct: 182 IETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL---WDVREGMCRQTFTG--- 235
Query: 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628
+ ++ + F + DD +++D+ Q L T + + F+K+G L
Sbjct: 236 HESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL 295
Query: 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679
L ++ + + ++ D AGVL+ + ++S + T G +A GS
Sbjct: 296 LLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGV-TDDGMAVATGS 342
>pdb|2HR7|A Chain A, Insulin Receptor (Domains 1-3)
pdb|2HR7|B Chain B, Insulin Receptor (Domains 1-3)
Length = 486
Score = 29.6 bits (65), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 23/102 (22%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS 722
SV + G + NGS+ +N ++ E+ E+ L R S +L+ S
Sbjct: 323 SVTSAQELRGCTVINGSLIINIRGGNNLAAELEANLGLIEEISGYLKIRRS--YALVSLS 380
Query: 723 KVKANKISR-LTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763
+ ++ R T G + +AL + + +W W +++LT++
Sbjct: 381 FFRKLRLIRGETLEIGNYSFYALDNQNLRQLWDWSKHNLTIT 422
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,870,067
Number of Sequences: 62578
Number of extensions: 1387715
Number of successful extensions: 3845
Number of sequences better than 100.0: 114
Number of HSP's better than 100.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 49
Number of HSP's that attempted gapping in prelim test: 2971
Number of HSP's gapped (non-prelim): 620
length of query: 1084
length of database: 14,973,337
effective HSP length: 109
effective length of query: 975
effective length of database: 8,152,335
effective search space: 7948526625
effective search space used: 7948526625
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)