Query 001403
Match_columns 1084
No_of_seqs 916 out of 5295
Neff 10.5
Searched_HMMs 46136
Date Thu Mar 28 23:56:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001403.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001403hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0293 WD40 repeat-containing 100.0 1.6E-73 3.6E-78 565.3 34.5 493 5-645 17-514 (519)
2 KOG0275 Conserved WD40 repeat- 100.0 1.2E-62 2.6E-67 472.2 31.4 486 5-642 7-507 (508)
3 KOG0319 WD40-repeat-containing 100.0 6.8E-59 1.5E-63 495.6 48.5 578 340-1002 25-621 (775)
4 KOG0319 WD40-repeat-containing 100.0 1.1E-55 2.5E-60 471.0 45.4 583 298-958 25-620 (775)
5 KOG0318 WD40 repeat stress pro 100.0 1.1E-51 2.3E-56 423.3 61.3 573 340-1000 24-602 (603)
6 KOG0291 WD40-repeat-containing 100.0 8.6E-50 1.9E-54 425.8 60.5 581 297-1005 19-714 (893)
7 KOG0291 WD40-repeat-containing 100.0 2.9E-49 6.2E-54 421.8 64.1 578 393-1052 19-708 (893)
8 KOG0318 WD40 repeat stress pro 100.0 2.1E-49 4.6E-54 406.4 57.2 541 327-957 52-602 (603)
9 KOG0306 WD40-repeat-containing 100.0 3.5E-48 7.6E-53 413.3 52.1 568 343-1005 31-669 (888)
10 KOG0271 Notchless-like WD40 re 100.0 6.1E-50 1.3E-54 394.1 28.4 333 324-706 105-479 (480)
11 KOG0306 WD40-repeat-containing 100.0 2E-47 4.4E-52 407.5 49.7 586 398-1054 32-665 (888)
12 KOG0271 Notchless-like WD40 re 100.0 9.8E-50 2.1E-54 392.6 28.7 367 384-906 111-479 (480)
13 KOG1408 WD40 repeat protein [F 100.0 4.2E-43 9E-48 370.9 40.4 623 336-1054 39-714 (1080)
14 KOG1408 WD40 repeat protein [F 100.0 3.4E-41 7.4E-46 356.5 41.9 511 328-909 72-714 (1080)
15 KOG0272 U4/U6 small nuclear ri 100.0 1.6E-41 3.4E-46 340.0 22.4 283 332-642 173-458 (459)
16 KOG1539 WD repeat protein [Gen 100.0 4.8E-37 1E-41 332.7 55.6 575 399-1052 45-647 (910)
17 KOG0272 U4/U6 small nuclear ri 100.0 6.2E-41 1.3E-45 335.8 22.5 285 386-706 173-458 (459)
18 KOG0273 Beta-transducin family 100.0 5.7E-39 1.2E-43 325.8 35.5 335 322-755 167-522 (524)
19 KOG1063 RNA polymerase II elon 100.0 2.5E-37 5.5E-42 328.2 46.2 624 326-1053 46-763 (764)
20 KOG0276 Vesicle coat complex C 100.0 1.9E-37 4.1E-42 324.4 43.2 478 328-956 7-489 (794)
21 KOG0286 G-protein beta subunit 100.0 6E-38 1.3E-42 299.5 32.5 294 326-642 47-343 (343)
22 KOG1539 WD repeat protein [Gen 100.0 1.7E-35 3.8E-40 320.7 55.1 561 365-1002 56-650 (910)
23 KOG0279 G protein beta subunit 100.0 7.5E-38 1.6E-42 297.2 30.8 295 326-644 7-313 (315)
24 KOG0286 G-protein beta subunit 100.0 8.1E-37 1.7E-41 291.8 32.2 288 382-706 49-343 (343)
25 KOG0292 Vesicle coat complex C 100.0 9.8E-35 2.1E-39 315.3 47.5 584 330-1003 5-597 (1202)
26 KOG0276 Vesicle coat complex C 100.0 9E-35 1.9E-39 304.5 43.4 462 385-997 10-487 (794)
27 KOG0263 Transcription initiati 100.0 7.9E-36 1.7E-40 323.9 35.6 289 319-646 363-651 (707)
28 KOG0279 G protein beta subunit 100.0 1.8E-35 3.9E-40 281.1 32.1 295 723-1053 12-313 (315)
29 KOG1063 RNA polymerase II elon 100.0 5.2E-34 1.1E-38 303.1 41.7 543 440-1053 21-699 (764)
30 KOG0315 G-protein beta subunit 100.0 6.7E-35 1.4E-39 272.0 30.1 291 347-665 11-309 (311)
31 KOG0296 Angio-associated migra 100.0 2.3E-34 4.9E-39 283.7 34.6 339 428-908 59-398 (399)
32 KOG2106 Uncharacterized conser 100.0 3.2E-32 7E-37 278.6 50.5 534 328-999 60-625 (626)
33 KOG0315 G-protein beta subunit 100.0 4.7E-34 1E-38 266.3 30.8 295 492-887 11-309 (311)
34 KOG0295 WD40 repeat-containing 100.0 7.6E-35 1.7E-39 286.7 25.9 293 324-643 98-405 (406)
35 KOG0273 Beta-transducin family 100.0 5.7E-34 1.2E-38 289.6 31.8 334 387-908 177-523 (524)
36 KOG0296 Angio-associated migra 100.0 5.6E-34 1.2E-38 280.9 29.9 335 324-707 54-397 (399)
37 KOG2048 WD40 repeat protein [G 100.0 6.5E-31 1.4E-35 279.6 55.3 573 388-1080 25-623 (691)
38 KOG0292 Vesicle coat complex C 100.0 3.8E-32 8.3E-37 295.3 45.6 576 385-1056 6-597 (1202)
39 KOG0285 Pleiotropic regulator 100.0 4.1E-34 8.8E-39 280.1 26.5 299 320-646 137-441 (460)
40 KOG2106 Uncharacterized conser 100.0 6E-32 1.3E-36 276.6 43.0 503 323-907 93-625 (626)
41 KOG0265 U5 snRNP-specific prot 100.0 1.2E-33 2.6E-38 271.4 27.7 290 328-641 41-335 (338)
42 KOG0645 WD40 repeat protein [G 100.0 4.8E-33 1E-37 263.4 31.2 291 326-644 6-311 (312)
43 KOG0293 WD40 repeat-containing 100.0 4.8E-34 1E-38 284.7 22.8 294 382-708 218-513 (519)
44 KOG0295 WD40 repeat-containing 100.0 7.3E-34 1.6E-38 279.8 23.5 285 384-706 104-404 (406)
45 KOG0265 U5 snRNP-specific prot 100.0 3.6E-33 7.7E-38 268.2 27.3 277 383-672 42-324 (338)
46 KOG0266 WD40 repeat-containing 100.0 3.3E-32 7.1E-37 309.1 32.4 296 327-644 151-454 (456)
47 KOG0285 Pleiotropic regulator 100.0 2.4E-32 5.2E-37 267.7 26.2 294 383-756 146-439 (460)
48 KOG0284 Polyadenylation factor 100.0 1.7E-33 3.7E-38 281.0 18.0 282 335-644 97-380 (464)
49 KOG2048 WD40 repeat protein [G 100.0 7.5E-29 1.6E-33 264.0 52.4 503 431-1054 23-549 (691)
50 KOG0316 Conserved WD40 repeat- 100.0 9.5E-32 2.1E-36 248.7 25.0 293 320-642 3-297 (307)
51 KOG0263 Transcription initiati 100.0 2.3E-32 4.9E-37 297.1 22.4 263 726-1002 378-651 (707)
52 KOG0645 WD40 repeat protein [G 100.0 1.6E-30 3.5E-35 246.3 30.2 292 724-1053 12-311 (312)
53 KOG0282 mRNA splicing factor [ 100.0 1.5E-32 3.3E-37 280.7 17.3 296 322-642 202-503 (503)
54 KOG0284 Polyadenylation factor 100.0 3.9E-32 8.4E-37 271.3 18.6 279 616-999 98-379 (464)
55 cd00200 WD40 WD40 domain, foun 100.0 4.6E-30 1E-34 279.7 36.0 287 328-642 3-289 (289)
56 KOG0266 WD40 repeat-containing 100.0 2E-30 4.4E-35 294.5 31.7 290 387-708 158-454 (456)
57 KOG0281 Beta-TrCP (transducin 100.0 1.3E-31 2.8E-36 261.2 16.5 277 333-649 196-482 (499)
58 KOG0316 Conserved WD40 repeat- 100.0 4.6E-30 9.9E-35 237.7 23.6 271 383-671 12-285 (307)
59 KOG1445 Tumor-specific antigen 100.0 3.8E-29 8.2E-34 262.0 32.1 624 324-1004 69-848 (1012)
60 KOG0281 Beta-TrCP (transducin 100.0 2.4E-31 5.1E-36 259.3 14.5 277 387-715 196-484 (499)
61 PLN00181 protein SPA1-RELATED; 100.0 7.8E-29 1.7E-33 304.5 39.3 289 330-643 479-792 (793)
62 KOG0282 mRNA splicing factor [ 100.0 6.7E-31 1.5E-35 268.8 16.9 290 383-706 209-503 (503)
63 KOG1445 Tumor-specific antigen 100.0 3.2E-28 6.8E-33 255.2 37.0 666 365-1059 55-850 (1012)
64 cd00200 WD40 WD40 domain, foun 100.0 1.3E-28 2.8E-33 268.3 35.2 285 384-706 5-289 (289)
65 PLN00181 protein SPA1-RELATED; 100.0 5.7E-28 1.2E-32 296.8 42.0 320 365-755 458-792 (793)
66 KOG0278 Serine/threonine kinas 100.0 5.6E-30 1.2E-34 239.0 17.7 290 328-648 8-301 (334)
67 KOG0640 mRNA cleavage stimulat 100.0 2E-28 4.3E-33 235.7 27.3 303 323-644 101-426 (430)
68 KOG0275 Conserved WD40 repeat- 100.0 1.9E-29 4E-34 243.7 19.3 289 386-706 211-507 (508)
69 KOG0278 Serine/threonine kinas 100.0 1.4E-29 3E-34 236.5 16.1 288 384-713 10-302 (334)
70 KOG0973 Histone transcription 100.0 2.1E-28 4.5E-33 275.9 28.8 301 331-646 10-357 (942)
71 KOG0288 WD40 repeat protein Ti 100.0 2.3E-29 4.9E-34 252.2 18.7 297 320-641 161-458 (459)
72 KOG1407 WD40 repeat protein [F 100.0 8.1E-28 1.7E-32 226.7 27.7 279 328-635 14-293 (313)
73 KOG0310 Conserved WD40 repeat- 100.0 4.3E-28 9.3E-33 248.9 27.3 284 331-644 24-309 (487)
74 KOG0643 Translation initiation 100.0 1.3E-27 2.9E-32 225.8 27.5 286 383-708 5-317 (327)
75 KOG0643 Translation initiation 100.0 1.2E-27 2.7E-32 226.0 25.4 301 428-867 5-318 (327)
76 KOG0313 Microtubule binding pr 100.0 2.6E-27 5.5E-32 235.1 26.3 310 387-909 104-419 (423)
77 KOG0647 mRNA export protein (c 100.0 6.9E-27 1.5E-31 225.2 26.3 276 333-633 26-312 (347)
78 KOG0313 Microtubule binding pr 100.0 4.5E-27 9.7E-32 233.4 25.6 283 331-644 102-418 (423)
79 KOG0310 Conserved WD40 repeat- 100.0 4.8E-27 1E-31 241.3 26.7 282 725-1052 25-308 (487)
80 KOG0973 Histone transcription 100.0 5.8E-27 1.3E-31 264.3 27.9 306 725-1058 12-360 (942)
81 KOG0641 WD40 repeat protein [G 100.0 9.2E-26 2E-30 207.4 30.7 296 326-644 25-349 (350)
82 KOG0283 WD40 repeat-containing 100.0 2.7E-27 5.8E-32 260.4 24.5 297 325-646 257-578 (712)
83 KOG0772 Uncharacterized conser 100.0 4E-27 8.7E-32 242.1 23.9 308 319-645 152-488 (641)
84 KOG0640 mRNA cleavage stimulat 100.0 4E-27 8.7E-32 226.7 22.2 307 614-1000 112-426 (430)
85 KOG0274 Cdc4 and related F-box 100.0 1.2E-26 2.5E-31 261.0 29.7 284 332-652 206-490 (537)
86 KOG1446 Histone H3 (Lys4) meth 100.0 1.9E-25 4E-30 218.1 32.9 287 330-644 10-303 (311)
87 KOG0277 Peroxisomal targeting 100.0 9.3E-27 2E-31 218.6 22.7 291 336-643 10-308 (311)
88 PTZ00421 coronin; Provisional 100.0 9E-26 1.9E-30 254.3 35.4 281 333-625 19-314 (493)
89 KOG1446 Histone H3 (Lys4) meth 100.0 2.8E-25 6E-30 216.9 32.7 274 384-670 10-289 (311)
90 PTZ00420 coronin; Provisional 100.0 3.5E-25 7.6E-30 249.7 36.8 273 342-626 34-318 (568)
91 KOG0305 Anaphase promoting com 99.9 7.3E-26 1.6E-30 243.5 27.5 278 338-646 181-463 (484)
92 KOG0772 Uncharacterized conser 99.9 6.1E-26 1.3E-30 233.4 25.2 311 724-1069 165-507 (641)
93 KOG1407 WD40 repeat protein [F 99.9 2.2E-25 4.7E-30 210.4 25.6 255 384-653 16-270 (313)
94 KOG0283 WD40 repeat-containing 99.9 9.4E-26 2E-30 248.3 26.6 277 724-1003 265-579 (712)
95 KOG0288 WD40 repeat protein Ti 99.9 1.3E-26 2.7E-31 232.6 17.9 285 384-706 171-459 (459)
96 KOG1963 WD40 repeat protein [G 99.9 1.5E-23 3.2E-28 231.6 43.0 518 392-1009 20-592 (792)
97 PTZ00421 coronin; Provisional 99.9 9.4E-25 2E-29 246.0 33.8 270 387-666 19-313 (493)
98 KOG2096 WD40 repeat protein [G 99.9 4.1E-25 8.8E-30 214.0 26.2 207 793-1002 186-404 (420)
99 KOG0294 WD40 repeat-containing 99.9 6.1E-25 1.3E-29 213.1 27.3 240 792-1055 41-283 (362)
100 KOG0641 WD40 repeat protein [G 99.9 4.4E-24 9.6E-29 196.4 30.9 303 725-1052 31-348 (350)
101 KOG0308 Conserved WD40 repeat- 99.9 5.8E-26 1.3E-30 240.4 21.2 242 393-646 29-287 (735)
102 KOG0274 Cdc4 and related F-box 99.9 2.5E-25 5.4E-30 250.3 27.7 279 387-713 207-487 (537)
103 KOG0299 U3 snoRNP-associated p 99.9 3.5E-25 7.7E-30 225.7 25.7 281 328-633 136-444 (479)
104 KOG1036 Mitotic spindle checkp 99.9 1.3E-24 2.8E-29 210.9 27.0 270 334-634 13-294 (323)
105 KOG0308 Conserved WD40 repeat- 99.9 2.2E-25 4.8E-30 236.0 23.1 284 339-645 29-328 (735)
106 KOG0299 U3 snoRNP-associated p 99.9 9.9E-25 2.1E-29 222.5 26.2 250 384-646 138-412 (479)
107 KOG0647 mRNA export protein (c 99.9 1E-24 2.2E-29 210.3 24.4 274 385-671 24-308 (347)
108 KOG0277 Peroxisomal targeting 99.9 4.9E-25 1.1E-29 207.1 21.5 200 793-999 103-308 (311)
109 KOG0301 Phospholipase A2-activ 99.9 1.9E-24 4.1E-29 231.0 27.5 284 325-646 5-290 (745)
110 KOG0305 Anaphase promoting com 99.9 1.1E-24 2.4E-29 234.4 25.5 274 393-709 182-462 (484)
111 KOG2096 WD40 repeat protein [G 99.9 3.2E-24 6.9E-29 207.8 25.4 251 383-649 81-365 (420)
112 KOG0289 mRNA splicing factor [ 99.9 2.4E-24 5.2E-29 217.4 25.3 281 389-706 220-504 (506)
113 KOG0268 Sof1-like rRNA process 99.9 1.4E-25 3E-30 221.3 15.4 283 428-756 61-345 (433)
114 KOG0294 WD40 repeat-containing 99.9 1.3E-23 2.9E-28 203.9 27.8 243 384-646 39-283 (362)
115 KOG1274 WD40 repeat protein [G 99.9 1.6E-21 3.6E-26 215.5 47.3 280 386-682 11-296 (933)
116 KOG0289 mRNA splicing factor [ 99.9 1.5E-23 3.1E-28 211.8 27.8 284 335-643 220-505 (506)
117 KOG1332 Vesicle coat complex C 99.9 1E-24 2.2E-29 203.8 17.5 252 384-645 7-287 (299)
118 KOG0268 Sof1-like rRNA process 99.9 5.3E-25 1.1E-29 217.2 16.2 293 324-649 56-350 (433)
119 PTZ00420 coronin; Provisional 99.9 5.5E-23 1.2E-27 232.0 34.4 248 406-667 50-317 (568)
120 KOG0300 WD40 repeat-containing 99.9 7E-24 1.5E-28 204.9 21.1 298 324-646 138-478 (481)
121 KOG0300 WD40 repeat-containing 99.9 1E-23 2.2E-28 203.8 22.0 331 559-1002 140-478 (481)
122 KOG0301 Phospholipase A2-activ 99.9 1.1E-23 2.4E-28 225.1 23.9 279 383-708 9-288 (745)
123 KOG1963 WD40 repeat protein [G 99.9 3.1E-21 6.8E-26 213.3 42.6 504 437-1059 20-589 (792)
124 KOG0639 Transducin-like enhanc 99.9 8.7E-24 1.9E-28 216.5 20.3 285 332-643 417-703 (705)
125 KOG1274 WD40 repeat protein [G 99.9 3.1E-22 6.7E-27 221.2 31.5 284 725-1051 12-298 (933)
126 KOG1538 Uncharacterized conser 99.9 2.3E-21 5E-26 205.2 35.8 492 390-953 14-520 (1081)
127 KOG1332 Vesicle coat complex C 99.9 3.1E-23 6.7E-28 193.9 18.4 256 328-600 5-286 (299)
128 KOG4283 Transcription-coupled 99.9 4E-22 8.7E-27 191.2 25.5 308 330-708 39-365 (397)
129 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 8.7E-21 1.9E-25 208.2 39.8 279 583-1009 2-288 (300)
130 KOG0639 Transducin-like enhanc 99.9 6.9E-23 1.5E-27 210.0 20.9 282 725-1052 418-703 (705)
131 KOG2055 WD40 repeat protein [G 99.9 2.6E-22 5.7E-27 204.6 23.5 292 655-1000 212-512 (514)
132 KOG0264 Nucleosome remodeling 99.9 2E-22 4.2E-27 206.3 21.4 254 331-601 121-405 (422)
133 KOG1273 WD40 repeat protein [G 99.9 3.8E-22 8.2E-27 193.3 22.1 282 391-708 26-322 (405)
134 KOG0646 WD40 repeat protein [G 99.9 2.8E-22 6E-27 205.3 21.3 245 365-625 61-330 (476)
135 KOG2055 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 200.1 24.7 288 334-644 213-512 (514)
136 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 1.9E-20 4.1E-25 205.5 36.5 290 347-665 2-299 (300)
137 KOG0646 WD40 repeat protein [G 99.9 1.1E-21 2.4E-26 200.8 23.1 285 365-669 18-332 (476)
138 KOG0264 Nucleosome remodeling 99.9 8.6E-22 1.9E-26 201.7 21.7 251 386-645 122-405 (422)
139 KOG1036 Mitotic spindle checkp 99.9 8.6E-21 1.9E-25 184.5 27.0 271 387-675 12-293 (323)
140 KOG1273 WD40 repeat protein [G 99.9 4.4E-21 9.5E-26 186.0 24.6 298 321-646 12-324 (405)
141 KOG0267 Microtubule severing p 99.9 9.8E-23 2.1E-27 218.6 11.0 246 365-635 14-259 (825)
142 KOG0650 WD40 repeat nucleolar 99.9 2.9E-21 6.2E-26 202.9 20.5 322 383-753 395-732 (733)
143 KOG0650 WD40 repeat nucleolar 99.9 8.4E-21 1.8E-25 199.4 23.1 322 559-954 392-732 (733)
144 KOG4283 Transcription-coupled 99.9 1.4E-20 2.9E-25 180.8 22.5 295 653-999 40-364 (397)
145 KOG1538 Uncharacterized conser 99.9 3E-19 6.6E-24 189.3 34.1 175 435-626 14-188 (1081)
146 KOG0269 WD40 repeat-containing 99.9 8E-21 1.7E-25 205.9 20.6 237 737-1003 99-343 (839)
147 KOG2445 Nuclear pore complex c 99.9 1.4E-19 3.1E-24 175.4 24.9 255 384-644 9-318 (361)
148 KOG1009 Chromatin assembly com 99.9 9.5E-20 2.1E-24 183.5 23.7 301 329-648 9-376 (434)
149 KOG4328 WD40 protein [Function 99.9 1.5E-19 3.3E-24 184.6 24.6 302 327-645 179-496 (498)
150 KOG0270 WD40 repeat-containing 99.9 3E-20 6.5E-25 189.2 19.2 252 390-649 175-454 (463)
151 KOG0321 WD40 repeat-containing 99.8 1.2E-19 2.6E-24 192.5 22.9 288 738-1054 64-392 (720)
152 KOG0267 Microtubule severing p 99.8 4.3E-21 9.4E-26 206.1 11.0 238 329-592 23-260 (825)
153 KOG4378 Nuclear protein COP1 [ 99.8 2.2E-19 4.7E-24 184.4 22.3 289 365-669 12-306 (673)
154 KOG0269 WD40 repeat-containing 99.8 8E-20 1.7E-24 198.2 20.1 290 336-645 41-341 (839)
155 KOG4378 Nuclear protein COP1 [ 99.8 3.2E-19 6.9E-24 183.2 23.1 293 586-982 6-305 (673)
156 KOG0307 Vesicle coat complex C 99.8 2.6E-20 5.6E-25 211.7 16.6 299 338-646 10-329 (1049)
157 COG2319 FOG: WD40 repeat [Gene 99.8 9.7E-17 2.1E-21 186.7 47.2 372 384-909 61-443 (466)
158 KOG4497 Uncharacterized conser 99.8 9.9E-19 2.1E-23 170.7 23.2 406 393-900 13-424 (447)
159 KOG2445 Nuclear pore complex c 99.8 1.5E-18 3.2E-23 168.5 23.7 267 331-611 10-332 (361)
160 KOG1034 Transcriptional repres 99.8 4E-19 8.7E-24 173.8 19.9 299 724-1052 36-382 (385)
161 KOG1034 Transcriptional repres 99.8 1E-18 2.2E-23 171.0 22.6 292 328-644 32-383 (385)
162 KOG0321 WD40 repeat-containing 99.8 4.4E-19 9.4E-24 188.3 21.2 289 393-708 54-391 (720)
163 KOG4328 WD40 protein [Function 99.8 1.1E-18 2.4E-23 178.3 22.3 308 646-1001 176-496 (498)
164 KOG1912 WD40 repeat protein [G 99.8 1.7E-17 3.6E-22 179.7 31.8 565 387-1054 14-657 (1062)
165 COG2319 FOG: WD40 repeat [Gene 99.8 1.8E-16 4E-21 184.4 43.6 370 329-757 60-443 (466)
166 KOG0302 Ribosome Assembly prot 99.8 8.6E-19 1.9E-23 174.6 19.5 253 329-597 146-435 (440)
167 KOG0303 Actin-binding protein 99.8 4.2E-18 9.2E-23 170.6 23.6 269 345-625 43-320 (472)
168 KOG2919 Guanine nucleotide-bin 99.8 6E-18 1.3E-22 165.1 23.0 190 797-991 161-361 (406)
169 KOG1524 WD40 repeat-containing 99.8 3.8E-17 8.3E-22 169.7 30.2 499 387-1056 13-526 (737)
170 KOG1009 Chromatin assembly com 99.8 1.1E-17 2.5E-22 168.7 25.6 302 726-1056 13-375 (434)
171 KOG2919 Guanine nucleotide-bin 99.8 8.3E-18 1.8E-22 164.2 22.8 278 339-635 54-361 (406)
172 KOG4497 Uncharacterized conser 99.8 2.3E-17 4.9E-22 161.3 24.1 338 526-992 13-424 (447)
173 KOG0270 WD40 repeat-containing 99.8 3.4E-18 7.3E-23 174.4 18.9 242 345-605 191-454 (463)
174 KOG1524 WD40 repeat-containing 99.8 1.8E-16 3.8E-21 164.9 29.8 491 332-958 12-524 (737)
175 KOG0302 Ribosome Assembly prot 99.8 5.1E-18 1.1E-22 169.1 17.4 175 323-510 200-379 (440)
176 KOG0303 Actin-binding protein 99.8 7E-17 1.5E-21 162.0 22.1 237 399-648 43-298 (472)
177 KOG0649 WD40 repeat protein [G 99.8 7.4E-16 1.6E-20 144.6 27.0 288 728-1051 12-314 (325)
178 KOG1334 WD40 repeat protein [G 99.8 4.6E-18 1E-22 175.1 13.4 302 325-646 133-468 (559)
179 KOG1912 WD40 repeat protein [G 99.8 1.9E-15 4.2E-20 164.0 33.9 603 336-1004 17-745 (1062)
180 KOG0644 Uncharacterized conser 99.8 3.3E-18 7.2E-23 186.5 12.1 285 327-649 183-473 (1113)
181 KOG1007 WD repeat protein TSSC 99.8 1.4E-16 3.1E-21 153.2 21.2 258 329-600 58-361 (370)
182 KOG2110 Uncharacterized conser 99.7 3.4E-15 7.4E-20 149.4 31.5 242 388-646 5-250 (391)
183 KOG0642 Cell-cycle nuclear pro 99.7 1.6E-17 3.4E-22 174.7 15.2 260 384-654 290-571 (577)
184 KOG0307 Vesicle coat complex C 99.7 9E-18 2E-22 191.3 14.2 249 336-603 66-330 (1049)
185 KOG4227 WD40 repeat protein [G 99.7 2.8E-16 6.1E-21 156.8 22.4 294 384-707 52-386 (609)
186 KOG1310 WD40 repeat protein [G 99.7 1.4E-16 3E-21 166.1 20.9 249 428-721 45-316 (758)
187 KOG0322 G-protein beta subunit 99.7 6.6E-17 1.4E-21 153.6 16.6 307 561-907 8-322 (323)
188 KOG4227 WD40 repeat protein [G 99.7 2.6E-16 5.6E-21 157.1 21.3 298 326-644 48-387 (609)
189 KOG0649 WD40 repeat protein [G 99.7 1.2E-15 2.6E-20 143.1 24.3 274 336-641 12-313 (325)
190 PRK11028 6-phosphogluconolacto 99.7 1.2E-14 2.7E-19 160.5 36.6 202 798-1004 83-310 (330)
191 PRK11028 6-phosphogluconolacto 99.7 8.3E-15 1.8E-19 161.9 33.9 250 794-1059 34-310 (330)
192 KOG1188 WD40 repeat protein [G 99.7 1.3E-16 2.8E-21 157.5 16.9 292 449-756 42-346 (376)
193 KOG0644 Uncharacterized conser 99.7 1.4E-17 3.1E-22 181.7 11.2 288 558-911 181-471 (1113)
194 KOG2110 Uncharacterized conser 99.7 6.3E-15 1.4E-19 147.5 27.2 241 794-1056 5-251 (391)
195 KOG1007 WD repeat protein TSSC 99.7 2E-15 4.4E-20 145.3 20.6 228 814-1054 39-290 (370)
196 KOG1188 WD40 repeat protein [G 99.7 1.8E-15 3.9E-20 149.5 20.7 277 347-644 41-346 (376)
197 KOG0322 G-protein beta subunit 99.7 4.6E-16 1E-20 148.0 15.7 286 384-707 10-322 (323)
198 KOG0642 Cell-cycle nuclear pro 99.7 3.8E-16 8.3E-21 164.4 15.3 263 328-610 288-571 (577)
199 KOG1517 Guanine nucleotide bin 99.7 1E-14 2.2E-19 163.8 25.8 303 571-1003 1065-1384(1387)
200 KOG1517 Guanine nucleotide bin 99.7 4.8E-15 1E-19 166.4 23.2 305 435-869 1066-1384(1387)
201 KOG0290 Conserved WD40 repeat- 99.7 8.9E-15 1.9E-19 141.2 21.6 286 336-640 46-361 (364)
202 KOG1587 Cytoplasmic dynein int 99.7 2E-14 4.3E-19 160.8 27.8 269 365-646 222-518 (555)
203 KOG0771 Prolactin regulatory e 99.7 8.3E-16 1.8E-20 156.9 14.8 199 798-1002 148-356 (398)
204 PF02239 Cytochrom_D1: Cytochr 99.7 1.2E-13 2.7E-18 151.1 32.2 330 493-914 8-353 (369)
205 KOG0771 Prolactin regulatory e 99.6 2.9E-15 6.3E-20 153.0 16.0 197 839-1054 148-355 (398)
206 PRK01742 tolB translocation pr 99.6 1.6E-14 3.5E-19 164.3 23.7 234 365-625 184-426 (429)
207 KOG1240 Protein kinase contain 99.6 7.2E-14 1.6E-18 159.9 28.1 255 384-646 1044-1336(1431)
208 PF02239 Cytochrom_D1: Cytochr 99.6 2.9E-12 6.3E-17 140.3 38.9 335 447-875 6-356 (369)
209 KOG1334 WD40 repeat protein [G 99.6 4.5E-15 9.7E-20 153.4 15.1 296 384-708 138-466 (559)
210 KOG0290 Conserved WD40 repeat- 99.6 5.9E-14 1.3E-18 135.6 20.7 242 792-1043 94-356 (364)
211 KOG2394 WD40 protein DMR-N9 [G 99.6 6.9E-14 1.5E-18 146.3 22.6 248 803-1067 182-464 (636)
212 PRK01742 tolB translocation pr 99.6 1.8E-14 4E-19 163.9 20.2 236 318-581 187-426 (429)
213 KOG2111 Uncharacterized conser 99.6 1.7E-12 3.7E-17 127.7 30.8 241 390-646 7-258 (346)
214 KOG2139 WD40 repeat protein [G 99.6 4.1E-13 8.8E-18 133.9 25.8 299 617-1000 101-431 (445)
215 KOG1832 HIV-1 Vpr-binding prot 99.6 1.2E-15 2.5E-20 167.5 7.8 215 384-631 1097-1318(1516)
216 COG4946 Uncharacterized protei 99.6 4.1E-10 8.9E-15 116.5 46.5 199 793-1001 400-655 (668)
217 KOG1523 Actin-related protein 99.6 2.1E-13 4.6E-18 133.9 21.6 238 333-591 9-269 (361)
218 KOG2139 WD40 repeat protein [G 99.6 2.7E-12 5.9E-17 128.1 27.9 288 336-644 100-431 (445)
219 KOG2111 Uncharacterized conser 99.6 1.4E-12 3.1E-17 128.2 25.4 240 796-1056 7-259 (346)
220 KOG1240 Protein kinase contain 99.6 5.2E-13 1.1E-17 153.0 25.7 269 324-605 1038-1339(1431)
221 KOG1272 WD40-repeat-containing 99.6 1.6E-14 3.4E-19 148.5 11.8 269 388-680 129-403 (545)
222 KOG1523 Actin-related protein 99.6 6.7E-13 1.5E-17 130.5 22.4 232 388-632 10-267 (361)
223 KOG2041 WD40 repeat protein [G 99.6 8.4E-12 1.8E-16 134.7 32.6 508 387-998 13-617 (1189)
224 KOG0974 WD-repeat protein WDR6 99.6 1E-10 2.2E-15 133.3 42.9 259 365-646 26-290 (967)
225 KOG1310 WD40 repeat protein [G 99.5 9.7E-14 2.1E-18 145.2 16.1 245 326-608 42-311 (758)
226 PRK03629 tolB translocation pr 99.5 1.6E-12 3.4E-17 147.5 27.3 238 365-624 179-427 (429)
227 PF04762 IKI3: IKI3 family; I 99.5 1.4E-08 3E-13 123.8 62.4 509 387-1053 74-639 (928)
228 PRK03629 tolB translocation pr 99.5 6.7E-13 1.5E-17 150.5 23.9 237 318-580 182-427 (429)
229 KOG1587 Cytoplasmic dynein int 99.5 1.1E-12 2.5E-17 146.8 24.9 249 335-601 243-517 (555)
230 KOG2315 Predicted translation 99.5 1.1E-11 2.4E-16 131.4 30.6 286 336-652 36-352 (566)
231 KOG2321 WD40 repeat protein [G 99.5 1.9E-12 4.1E-17 136.7 24.0 283 332-646 49-345 (703)
232 COG5354 Uncharacterized protei 99.5 6.8E-12 1.5E-16 131.2 26.8 353 333-748 31-421 (561)
233 COG4946 Uncharacterized protei 99.5 1.5E-09 3.3E-14 112.4 43.4 143 792-945 357-505 (668)
234 KOG0974 WD-repeat protein WDR6 99.5 1.2E-10 2.5E-15 132.8 38.8 194 336-556 89-289 (967)
235 PRK05137 tolB translocation pr 99.5 5.2E-12 1.1E-16 144.5 28.9 237 365-624 182-432 (435)
236 PRK04922 tolB translocation pr 99.5 3.4E-12 7.3E-17 145.8 26.9 238 365-624 184-432 (433)
237 PRK04922 tolB translocation pr 99.5 1.3E-12 2.8E-17 149.2 23.0 237 318-580 187-432 (433)
238 KOG1272 WD40-repeat-containing 99.5 6.9E-14 1.5E-18 143.8 10.4 279 330-641 125-406 (545)
239 KOG2041 WD40 repeat protein [G 99.5 1.7E-10 3.7E-15 124.8 36.2 526 336-959 16-621 (1189)
240 PF04762 IKI3: IKI3 family; I 99.5 2.7E-08 5.8E-13 121.3 59.1 577 333-1005 74-689 (928)
241 COG5354 Uncharacterized protei 99.5 8.7E-11 1.9E-15 123.0 31.8 365 505-992 16-421 (561)
242 PF10282 Lactonase: Lactonase, 99.5 5.5E-10 1.2E-14 123.2 40.6 209 797-1007 89-331 (345)
243 PRK02889 tolB translocation pr 99.5 2.7E-12 5.9E-17 145.9 23.0 238 318-581 179-425 (427)
244 KOG2394 WD40 protein DMR-N9 [G 99.5 4.2E-12 9E-17 133.2 20.7 274 336-648 125-456 (636)
245 PRK02889 tolB translocation pr 99.5 9.5E-12 2.1E-16 141.4 25.7 238 365-624 176-424 (427)
246 PRK05137 tolB translocation pr 99.5 6.8E-12 1.5E-16 143.5 24.3 236 319-580 186-432 (435)
247 KOG2321 WD40 repeat protein [G 99.4 1.7E-11 3.7E-16 129.7 23.6 299 724-1066 49-356 (703)
248 KOG2314 Translation initiation 99.4 1.2E-10 2.5E-15 123.0 29.4 328 523-1001 212-574 (698)
249 COG2706 3-carboxymuconate cycl 99.4 8.4E-10 1.8E-14 112.0 33.4 281 699-1005 15-328 (346)
250 KOG2315 Predicted translation 99.4 6.9E-11 1.5E-15 125.5 26.2 287 336-646 75-392 (566)
251 KOG3881 Uncharacterized conser 99.4 2.4E-11 5.3E-16 123.0 21.6 224 387-624 104-341 (412)
252 TIGR02658 TTQ_MADH_Hv methylam 99.4 3.1E-09 6.7E-14 113.3 38.0 205 798-1009 108-339 (352)
253 KOG2314 Translation initiation 99.4 7.4E-11 1.6E-15 124.4 24.4 326 298-645 216-574 (698)
254 PF08662 eIF2A: Eukaryotic tra 99.4 4.6E-11 9.9E-16 118.6 21.0 155 839-1009 9-187 (194)
255 PF10282 Lactonase: Lactonase, 99.4 3.6E-09 7.8E-14 116.8 37.3 269 365-644 13-322 (345)
256 PRK01029 tolB translocation pr 99.4 1E-10 2.2E-15 132.0 25.1 244 319-582 169-426 (428)
257 KOG1409 Uncharacterized conser 99.4 7.1E-11 1.5E-15 117.5 20.4 342 559-1001 16-395 (404)
258 COG2706 3-carboxymuconate cycl 99.4 4.3E-09 9.2E-14 106.9 33.2 255 793-1061 38-329 (346)
259 PRK01029 tolB translocation pr 99.4 3.1E-10 6.6E-15 128.2 28.3 243 365-626 165-426 (428)
260 KOG1354 Serine/threonine prote 99.4 1.8E-10 3.8E-15 114.6 22.7 356 433-955 25-432 (433)
261 TIGR02658 TTQ_MADH_Hv methylam 99.3 3.9E-09 8.5E-14 112.5 33.4 281 547-875 27-339 (352)
262 PF08662 eIF2A: Eukaryotic tra 99.3 1E-10 2.2E-15 116.1 19.4 158 338-509 9-179 (194)
263 TIGR02800 propeller_TolB tol-p 99.3 1.8E-09 3.8E-14 124.2 32.8 215 411-644 171-397 (417)
264 PRK00178 tolB translocation pr 99.3 2.1E-10 4.5E-15 131.7 24.8 235 321-580 185-427 (430)
265 KOG2659 LisH motif-containing 99.3 1.2E-11 2.5E-16 118.6 11.5 167 3-183 24-204 (228)
266 PRK04792 tolB translocation pr 99.3 1.6E-10 3.5E-15 131.6 22.2 234 322-580 205-446 (448)
267 PRK04792 tolB translocation pr 99.3 5.3E-10 1.2E-14 127.4 26.4 238 365-624 198-446 (448)
268 KOG3881 Uncharacterized conser 99.3 3.7E-10 7.9E-15 114.7 21.8 251 387-652 54-328 (412)
269 TIGR02800 propeller_TolB tol-p 99.3 2.9E-10 6.2E-15 130.7 23.5 221 321-564 176-405 (417)
270 PRK00178 tolB translocation pr 99.3 1E-09 2.2E-14 126.0 27.2 238 365-624 179-427 (430)
271 KOG4547 WD40 repeat-containing 99.3 6.9E-10 1.5E-14 119.2 22.9 194 397-601 2-221 (541)
272 KOG1409 Uncharacterized conser 99.3 7.6E-11 1.6E-15 117.3 14.2 357 469-867 16-395 (404)
273 TIGR03300 assembly_YfgL outer 99.2 2.2E-08 4.8E-13 113.0 33.9 209 813-1050 153-376 (377)
274 KOG1354 Serine/threonine prote 99.2 1.9E-09 4.1E-14 107.4 21.6 294 387-708 24-359 (433)
275 TIGR03300 assembly_YfgL outer 99.2 2.6E-08 5.6E-13 112.4 31.7 183 449-646 67-261 (377)
276 KOG4547 WD40 repeat-containing 99.1 1.1E-08 2.3E-13 110.3 23.4 188 804-1001 3-221 (541)
277 KOG0280 Uncharacterized conser 99.1 2.2E-08 4.8E-13 98.0 21.7 295 336-646 16-335 (339)
278 KOG3617 WD40 and TPR repeat-co 99.1 1.1E-08 2.4E-13 113.2 20.1 508 338-962 19-590 (1416)
279 PLN02919 haloacid dehalogenase 99.0 1.6E-07 3.4E-12 117.1 32.4 260 730-1004 571-892 (1057)
280 PLN02919 haloacid dehalogenase 99.0 2.2E-07 4.7E-12 115.9 31.8 255 798-1056 571-891 (1057)
281 KOG4190 Uncharacterized conser 99.0 1.9E-09 4.2E-14 113.3 11.5 242 383-643 730-987 (1034)
282 PRK04043 tolB translocation pr 99.0 1.1E-07 2.4E-12 106.6 24.5 214 320-557 174-402 (419)
283 PF15492 Nbas_N: Neuroblastoma 99.0 2.9E-07 6.2E-12 91.1 23.5 205 800-1009 3-268 (282)
284 KOG1897 Damage-specific DNA bi 98.9 0.00032 7E-09 81.0 55.9 586 394-1058 263-947 (1096)
285 KOG1064 RAVE (regulator of V-A 98.9 5.2E-09 1.1E-13 125.1 12.3 225 401-653 2181-2407(2439)
286 KOG1064 RAVE (regulator of V-A 98.9 4.2E-09 9.2E-14 125.8 11.3 191 834-1057 2207-2402(2439)
287 KOG4190 Uncharacterized conser 98.9 9.3E-09 2E-13 108.3 11.8 297 320-640 721-1032(1034)
288 PRK11138 outer membrane biogen 98.9 2.3E-06 5.1E-11 96.8 32.0 216 809-1052 164-393 (394)
289 KOG0280 Uncharacterized conser 98.9 1.1E-07 2.3E-12 93.3 17.5 204 391-602 124-335 (339)
290 PRK04043 tolB translocation pr 98.9 1.2E-06 2.6E-11 98.4 28.6 212 816-1057 170-402 (419)
291 PF07433 DUF1513: Protein of u 98.9 1.5E-06 3.1E-11 89.3 25.7 183 799-990 55-276 (305)
292 KOG0309 Conserved WD40 repeat- 98.8 5.7E-08 1.2E-12 106.3 13.3 227 365-601 91-340 (1081)
293 KOG3617 WD40 and TPR repeat-co 98.8 8.8E-07 1.9E-11 98.7 22.3 338 392-811 19-372 (1416)
294 PRK11138 outer membrane biogen 98.8 1E-05 2.2E-10 91.7 31.6 153 449-609 71-232 (394)
295 PF15492 Nbas_N: Neuroblastoma 98.8 6.2E-06 1.4E-10 81.8 25.4 247 338-611 1-270 (282)
296 KOG3914 WD repeat protein WDR4 98.7 8.9E-08 1.9E-12 98.4 12.7 160 838-1009 65-232 (390)
297 KOG3914 WD repeat protein WDR4 98.7 1.3E-07 2.7E-12 97.3 13.5 161 336-517 64-231 (390)
298 PF13360 PQQ_2: PQQ-like domai 98.7 3.1E-06 6.6E-11 88.9 24.2 223 814-1060 2-237 (238)
299 COG5170 CDC55 Serine/threonine 98.7 3.1E-07 6.7E-12 90.5 13.9 259 793-1056 25-370 (460)
300 PF07433 DUF1513: Protein of u 98.7 3.9E-05 8.4E-10 79.0 29.5 206 797-1009 7-256 (305)
301 COG5170 CDC55 Serine/threonine 98.7 4E-07 8.6E-12 89.7 14.1 175 792-1001 170-368 (460)
302 PF06433 Me-amine-dh_H: Methyl 98.7 1.5E-05 3.3E-10 82.8 26.3 232 772-1009 69-329 (342)
303 PF08450 SGL: SMP-30/Gluconola 98.7 2.5E-05 5.3E-10 82.2 28.9 221 393-633 4-244 (246)
304 KOG0309 Conserved WD40 repeat- 98.7 1.7E-07 3.6E-12 102.8 12.3 294 388-708 24-339 (1081)
305 PF08450 SGL: SMP-30/Gluconola 98.7 3.3E-05 7.1E-10 81.2 29.5 184 797-989 42-244 (246)
306 KOG4649 PQQ (pyrrolo-quinoline 98.6 0.00018 3.8E-09 70.1 29.9 135 492-638 24-159 (354)
307 KOG4532 WD40-like repeat conta 98.6 8.8E-06 1.9E-10 79.0 21.2 241 806-1056 84-334 (344)
308 PF06433 Me-amine-dh_H: Methyl 98.6 1.3E-05 2.9E-10 83.2 23.5 261 337-613 38-333 (342)
309 KOG4532 WD40-like repeat conta 98.6 7.7E-06 1.7E-10 79.5 20.1 190 809-1003 132-334 (344)
310 PF13360 PQQ_2: PQQ-like domai 98.6 9.2E-06 2E-10 85.2 22.8 194 805-1006 35-236 (238)
311 KOG1832 HIV-1 Vpr-binding prot 98.6 7.2E-08 1.6E-12 107.5 5.8 194 825-1053 1091-1291(1516)
312 PF00930 DPPIV_N: Dipeptidyl p 98.5 3.5E-05 7.5E-10 85.5 26.9 275 343-634 1-347 (353)
313 PRK02888 nitrous-oxide reducta 98.5 1.5E-05 3.3E-10 89.6 23.1 105 801-909 283-405 (635)
314 PF00930 DPPIV_N: Dipeptidyl p 98.5 8.8E-05 1.9E-09 82.3 29.4 305 530-897 1-346 (353)
315 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00072 1.6E-08 65.9 30.7 102 546-654 32-133 (354)
316 KOG1920 IkappaB kinase complex 98.5 0.00017 3.7E-09 85.2 30.5 117 796-914 197-328 (1265)
317 PRK02888 nitrous-oxide reducta 98.5 0.00012 2.6E-09 82.6 28.4 184 800-1001 198-405 (635)
318 PF00400 WD40: WD domain, G-be 98.5 4.4E-07 9.4E-12 63.5 6.2 39 868-906 1-39 (39)
319 KOG1645 RING-finger-containing 98.5 1.9E-05 4.1E-10 81.4 19.9 251 383-644 188-461 (463)
320 KOG4714 Nucleoporin [Nuclear s 98.5 1.7E-06 3.7E-11 83.6 11.7 195 847-1051 100-316 (319)
321 KOG1897 Damage-specific DNA bi 98.5 0.0082 1.8E-07 70.0 51.8 487 458-997 471-1001(1096)
322 KOG1920 IkappaB kinase complex 98.4 0.00021 4.6E-09 84.4 30.2 244 388-648 68-326 (1265)
323 KOG0882 Cyclophilin-related pe 98.4 5.2E-06 1.1E-10 86.4 15.3 256 387-653 8-314 (558)
324 PF10607 CLTH: CTLH/CRA C-term 98.4 1E-06 2.2E-11 83.6 8.7 133 38-183 5-141 (145)
325 KOG0882 Cyclophilin-related pe 98.4 8.8E-06 1.9E-10 84.8 15.4 212 431-653 7-240 (558)
326 KOG0396 Uncharacterized conser 98.4 1.1E-06 2.5E-11 89.4 8.8 118 5-124 115-241 (389)
327 PF14583 Pectate_lyase22: Olig 98.4 0.00025 5.5E-09 75.5 26.6 174 815-999 168-380 (386)
328 KOG1275 PAB-dependent poly(A) 98.4 8.4E-06 1.8E-10 92.4 16.0 180 805-998 146-340 (1118)
329 KOG4714 Nucleoporin [Nuclear s 98.3 3.7E-06 8.1E-11 81.3 10.8 198 838-1054 39-255 (319)
330 KOG2114 Vacuolar assembly/sort 98.3 4.3E-05 9.3E-10 86.5 19.7 206 842-1062 30-252 (933)
331 KOG2695 WD40 repeat protein [G 98.3 2.1E-06 4.5E-11 86.4 7.9 153 808-967 227-386 (425)
332 KOG2695 WD40 repeat protein [G 98.3 3E-06 6.5E-11 85.2 8.8 149 365-521 234-388 (425)
333 COG0823 TolB Periplasmic compo 98.2 0.00036 7.9E-09 77.9 24.3 195 429-635 188-390 (425)
334 KOG3621 WD40 repeat-containing 98.2 0.00036 7.7E-09 77.8 23.1 139 334-485 33-178 (726)
335 PF00400 WD40: WD domain, G-be 98.2 7.1E-06 1.5E-10 57.3 6.4 39 825-864 1-39 (39)
336 KOG1645 RING-finger-containing 98.2 0.00016 3.6E-09 74.7 18.5 236 412-662 175-436 (463)
337 cd00216 PQQ_DH Dehydrogenases 98.1 0.002 4.4E-08 74.7 29.9 112 492-610 62-193 (488)
338 cd00216 PQQ_DH Dehydrogenases 98.1 0.0018 3.9E-08 75.2 28.7 254 806-1072 111-443 (488)
339 KOG1275 PAB-dependent poly(A) 98.1 7.1E-05 1.5E-09 85.2 15.2 186 449-644 149-342 (1118)
340 KOG2066 Vacuolar assembly/sort 98.1 0.00034 7.4E-09 79.0 20.2 185 729-957 42-233 (846)
341 KOG2066 Vacuolar assembly/sort 98.1 0.00023 4.9E-09 80.4 18.7 188 836-1053 40-233 (846)
342 smart00668 CTLH C-terminal to 98.0 3.4E-06 7.5E-11 65.1 3.1 53 37-90 4-56 (58)
343 PF02897 Peptidase_S9_N: Proly 98.0 0.004 8.7E-08 71.3 29.6 256 336-606 125-410 (414)
344 PF08596 Lgl_C: Lethal giant l 98.0 0.0021 4.5E-08 71.1 25.4 287 728-1055 3-337 (395)
345 PF14583 Pectate_lyase22: Olig 98.0 0.0085 1.8E-07 64.2 28.3 229 394-635 41-303 (386)
346 PRK13616 lipoprotein LpqB; Pro 98.0 0.0015 3.3E-08 76.2 25.1 216 836-1066 350-581 (591)
347 TIGR03075 PQQ_enz_alc_DH PQQ-d 98.0 0.031 6.6E-07 65.2 35.7 61 815-877 441-501 (527)
348 KOG2114 Vacuolar assembly/sort 97.9 0.0017 3.6E-08 74.2 23.1 202 800-1008 29-251 (933)
349 PF04053 Coatomer_WDAD: Coatom 97.9 0.0029 6.3E-08 71.0 24.4 220 387-645 31-263 (443)
350 PF11768 DUF3312: Protein of u 97.9 0.0052 1.1E-07 68.0 25.4 114 931-1057 208-333 (545)
351 PF11768 DUF3312: Protein of u 97.9 0.00058 1.3E-08 75.3 18.0 125 335-468 206-332 (545)
352 PF04841 Vps16_N: Vps16, N-ter 97.9 0.0093 2E-07 67.1 27.5 200 799-1009 33-255 (410)
353 KOG3621 WD40 repeat-containing 97.9 0.0017 3.7E-08 72.6 20.8 199 617-909 36-245 (726)
354 PF04053 Coatomer_WDAD: Coatom 97.8 0.0049 1.1E-07 69.2 24.3 219 794-1054 32-263 (443)
355 PF08513 LisH: LisH; InterPro 97.8 3.1E-05 6.7E-10 47.8 3.8 27 6-32 1-27 (27)
356 smart00667 LisH Lissencephaly 97.8 3E-05 6.5E-10 52.0 4.1 32 4-35 2-33 (34)
357 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.8 0.09 2E-06 61.3 34.9 149 859-1009 272-499 (527)
358 PF08596 Lgl_C: Lethal giant l 97.8 0.0078 1.7E-07 66.6 24.5 241 390-642 3-333 (395)
359 COG3391 Uncharacterized conser 97.8 0.012 2.6E-07 65.8 26.5 208 795-1009 74-292 (381)
360 PF06977 SdiA-regulated: SdiA- 97.7 0.0085 1.8E-07 61.3 22.6 216 829-1050 15-247 (248)
361 COG0823 TolB Periplasmic compo 97.7 0.0035 7.6E-08 70.1 21.4 172 817-1004 175-362 (425)
362 PF02897 Peptidase_S9_N: Proly 97.7 0.03 6.5E-07 64.1 28.7 246 390-648 125-408 (414)
363 COG3391 Uncharacterized conser 97.6 0.12 2.5E-06 58.0 31.7 250 390-652 32-291 (381)
364 PF06977 SdiA-regulated: SdiA- 97.6 0.021 4.6E-07 58.5 23.3 201 793-997 20-247 (248)
365 PRK13616 lipoprotein LpqB; Pro 97.6 0.0034 7.3E-08 73.4 19.7 187 795-995 350-563 (591)
366 COG3490 Uncharacterized protei 97.6 0.033 7.3E-07 55.7 23.1 267 557-906 58-346 (366)
367 PF04841 Vps16_N: Vps16, N-ter 97.5 0.058 1.3E-06 60.8 26.9 187 795-998 81-285 (410)
368 PF00780 CNH: CNH domain; Int 97.5 0.058 1.3E-06 57.8 25.6 235 736-1009 5-264 (275)
369 PF00780 CNH: CNH domain; Int 97.4 0.12 2.5E-06 55.4 27.0 231 398-654 5-265 (275)
370 COG3386 Gluconolactonase [Carb 97.4 0.033 7.1E-07 59.3 21.5 233 288-541 20-275 (307)
371 KOG2817 Predicted E3 ubiquitin 97.3 0.0016 3.4E-08 68.3 10.6 99 8-108 119-230 (394)
372 COG3490 Uncharacterized protei 97.3 0.016 3.5E-07 57.8 16.6 190 311-516 96-317 (366)
373 PF08553 VID27: VID27 cytoplas 97.3 0.016 3.5E-07 68.6 19.6 147 847-1000 492-647 (794)
374 PF14655 RAB3GAP2_N: Rab3 GTPa 97.3 0.096 2.1E-06 57.9 24.3 83 793-875 306-407 (415)
375 KOG4441 Proteins containing BT 97.2 0.5 1.1E-05 55.7 30.7 227 365-606 301-552 (571)
376 PF03178 CPSF_A: CPSF A subuni 97.1 0.03 6.4E-07 61.4 19.4 215 772-997 4-262 (321)
377 COG3386 Gluconolactonase [Carb 97.1 0.13 2.9E-06 54.8 22.8 214 440-665 31-263 (307)
378 PRK10115 protease 2; Provision 97.1 0.86 1.9E-05 55.3 32.5 248 336-603 128-397 (686)
379 KOG1008 Uncharacterized conser 97.1 0.00016 3.5E-09 79.2 0.9 204 479-709 58-276 (783)
380 PRK10115 protease 2; Provision 97.1 0.7 1.5E-05 56.0 31.6 245 389-646 127-396 (686)
381 TIGR03074 PQQ_membr_DH membran 97.1 1.3 2.7E-05 53.8 39.6 206 449-654 196-487 (764)
382 KOG1008 Uncharacterized conser 97.0 0.00036 7.9E-09 76.6 2.5 202 335-555 57-275 (783)
383 smart00320 WD40 WD40 repeats. 96.9 0.002 4.4E-08 44.1 5.3 39 868-906 2-40 (40)
384 KOG4640 Anaphase-promoting com 96.9 0.0042 9.1E-08 68.7 9.5 93 836-937 21-114 (665)
385 PF05096 Glu_cyclase_2: Glutam 96.8 0.46 9.9E-06 48.5 22.7 187 795-990 45-250 (264)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 96.8 0.31 6.8E-06 53.9 23.3 83 522-610 308-408 (415)
387 PF03178 CPSF_A: CPSF A subuni 96.8 0.17 3.7E-06 55.4 21.7 180 858-1054 2-203 (321)
388 PF10647 Gmad1: Lipoprotein Lp 96.8 0.63 1.4E-05 48.7 24.5 205 837-1066 25-247 (253)
389 PF10647 Gmad1: Lipoprotein Lp 96.8 0.15 3.2E-06 53.3 19.7 147 795-946 24-183 (253)
390 PF07995 GSDH: Glucose / Sorbo 96.7 0.81 1.8E-05 50.1 26.0 110 336-457 3-135 (331)
391 PF14870 PSII_BNR: Photosynthe 96.7 0.37 8.1E-06 51.1 22.2 158 832-997 141-301 (302)
392 PF14727 PHTB1_N: PTHB1 N-term 96.6 1.6 3.5E-05 48.6 32.0 276 738-1054 37-361 (418)
393 PF07995 GSDH: Glucose / Sorbo 96.6 0.58 1.3E-05 51.2 23.4 239 797-1048 4-330 (331)
394 KOG4441 Proteins containing BT 96.5 0.19 4.2E-06 59.1 20.6 234 399-646 284-548 (571)
395 KOG2395 Protein involved in va 96.5 0.041 8.9E-07 59.9 13.5 145 850-1000 348-500 (644)
396 PHA02713 hypothetical protein; 96.5 0.13 2.8E-06 60.7 19.1 201 444-655 303-544 (557)
397 KOG4640 Anaphase-promoting com 96.5 0.012 2.7E-07 65.2 9.3 92 794-887 20-114 (665)
398 PF05694 SBP56: 56kDa selenium 96.4 0.44 9.5E-06 51.8 20.2 237 737-989 86-392 (461)
399 KOG2079 Vacuolar assembly/sort 96.4 0.041 8.8E-07 65.1 13.3 104 399-508 98-202 (1206)
400 PHA02713 hypothetical protein; 96.4 0.19 4.2E-06 59.3 19.5 196 847-1066 303-544 (557)
401 PF08553 VID27: VID27 cytoplas 96.3 0.095 2.1E-06 62.4 16.1 145 446-599 493-646 (794)
402 PF14870 PSII_BNR: Photosynthe 96.3 1.9 4.2E-05 45.8 31.7 277 336-641 18-301 (302)
403 smart00320 WD40 WD40 repeats. 96.3 0.012 2.6E-07 40.0 5.6 39 825-864 2-40 (40)
404 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.21 4.5E-06 43.2 13.5 101 881-996 2-110 (111)
405 PF14783 BBS2_Mid: Ciliary BBS 96.2 0.34 7.4E-06 41.9 14.5 102 391-504 2-109 (111)
406 PF14727 PHTB1_N: PTHB1 N-term 96.2 2.1 4.5E-05 47.7 24.7 285 582-909 37-361 (418)
407 KOG4499 Ca2+-binding protein R 96.1 0.24 5.3E-06 48.2 14.6 156 336-499 110-275 (310)
408 COG3204 Uncharacterized protei 96.0 1.6 3.5E-05 44.7 20.5 204 724-953 83-308 (316)
409 PF15390 DUF4613: Domain of un 95.9 0.58 1.3E-05 52.3 18.6 161 836-1004 20-190 (671)
410 COG3204 Uncharacterized protei 95.8 1.7 3.7E-05 44.5 19.9 193 429-628 81-297 (316)
411 PF05694 SBP56: 56kDa selenium 95.8 1.2 2.5E-05 48.7 19.9 235 490-746 86-393 (461)
412 KOG4499 Ca2+-binding protein R 95.7 0.92 2E-05 44.5 16.6 202 365-581 37-264 (310)
413 PRK13684 Ycf48-like protein; P 95.7 4.3 9.3E-05 44.5 29.8 157 878-1053 172-331 (334)
414 KOG2395 Protein involved in va 95.7 0.2 4.3E-06 54.8 13.5 144 446-599 345-499 (644)
415 TIGR03074 PQQ_membr_DH membran 95.5 3.6 7.9E-05 50.0 25.1 204 805-1009 194-486 (764)
416 PF05096 Glu_cyclase_2: Glutam 95.5 3.4 7.3E-05 42.4 21.0 195 726-948 44-250 (264)
417 KOG3630 Nuclear pore complex, 95.5 0.24 5.2E-06 59.2 14.3 248 794-1079 100-363 (1405)
418 PF12894 Apc4_WD40: Anaphase-p 95.3 0.065 1.4E-06 38.4 5.9 31 388-418 11-41 (47)
419 KOG2444 WD40 repeat protein [G 95.2 0.055 1.2E-06 52.7 6.8 103 807-909 71-178 (238)
420 TIGR02604 Piru_Ver_Nterm putat 95.0 5.4 0.00012 44.5 23.4 139 795-945 14-200 (367)
421 KOG1898 Splicing factor 3b, su 94.9 13 0.00027 45.2 31.3 105 800-909 939-1049(1205)
422 PRK13684 Ycf48-like protein; P 94.8 7.6 0.00016 42.6 30.4 278 334-642 45-329 (334)
423 PF15390 DUF4613: Domain of un 94.8 9 0.0002 43.4 26.0 59 932-990 342-404 (671)
424 KOG2079 Vacuolar assembly/sort 94.8 0.084 1.8E-06 62.6 8.0 102 492-599 100-202 (1206)
425 KOG1916 Nuclear protein, conta 94.6 0.06 1.3E-06 62.2 6.3 129 329-477 127-282 (1283)
426 PHA03098 kelch-like protein; P 94.6 1.7 3.7E-05 51.6 19.1 153 490-647 342-514 (534)
427 PF12894 Apc4_WD40: Anaphase-p 94.6 0.12 2.5E-06 37.1 5.5 35 835-871 11-45 (47)
428 PF12234 Rav1p_C: RAVE protein 94.3 1.1 2.4E-05 52.3 15.5 119 834-956 28-155 (631)
429 PF12234 Rav1p_C: RAVE protein 94.2 1.1 2.3E-05 52.4 15.2 112 435-554 31-155 (631)
430 KOG2280 Vacuolar assembly/sort 94.1 5.3 0.00012 46.4 19.7 181 816-1009 65-255 (829)
431 PF14761 HPS3_N: Hermansky-Pud 94.0 2.7 5.9E-05 41.4 15.3 157 882-1052 21-213 (215)
432 TIGR03118 PEPCTERM_chp_1 conse 93.9 9.1 0.0002 39.8 23.9 215 435-655 24-290 (336)
433 KOG2444 WD40 repeat protein [G 93.6 0.23 5E-06 48.5 7.2 105 400-510 70-178 (238)
434 PHA03098 kelch-like protein; P 93.6 2.3 5E-05 50.5 17.6 197 398-606 293-517 (534)
435 PF10168 Nup88: Nuclear pore c 93.6 22 0.00047 43.1 25.5 93 794-909 84-180 (717)
436 PF10168 Nup88: Nuclear pore c 93.5 1.8 4E-05 52.0 15.9 91 970-1063 84-189 (717)
437 PF03022 MRJP: Major royal jel 93.3 9 0.0002 40.8 19.5 170 816-989 35-254 (287)
438 COG1520 FOG: WD40-like repeat 93.3 13 0.00027 41.7 21.8 201 802-1010 65-278 (370)
439 COG4257 Vgb Streptogramin lyas 93.2 11 0.00024 38.4 19.1 193 837-1056 63-265 (353)
440 KOG1916 Nuclear protein, conta 93.0 0.051 1.1E-06 62.8 2.1 140 857-1000 110-265 (1283)
441 KOG1898 Splicing factor 3b, su 93.0 28 0.0006 42.5 39.8 187 859-1064 854-1059(1205)
442 TIGR02604 Piru_Ver_Nterm putat 92.9 5 0.00011 44.8 17.8 147 879-1045 14-205 (367)
443 COG3823 Glutamine cyclotransfe 92.8 5.4 0.00012 38.7 14.5 177 805-988 55-247 (262)
444 PHA02790 Kelch-like protein; P 92.3 5.4 0.00012 46.3 17.5 185 449-646 274-472 (480)
445 KOG2280 Vacuolar assembly/sort 92.2 9.3 0.0002 44.5 18.1 185 456-653 63-255 (829)
446 KOG3630 Nuclear pore complex, 92.1 2.5 5.4E-05 51.2 14.0 145 880-1032 102-253 (1405)
447 COG4590 ABC-type uncharacteriz 91.7 0.5 1.1E-05 50.6 7.2 158 793-960 219-389 (733)
448 PHA02790 Kelch-like protein; P 91.6 7.3 0.00016 45.3 17.5 184 805-1004 271-474 (480)
449 KOG4460 Nuclear pore complex, 91.6 3.3 7.2E-05 45.6 13.1 99 970-1070 103-215 (741)
450 KOG2377 Uncharacterized conser 91.3 6.8 0.00015 42.6 14.8 142 838-986 25-169 (657)
451 PF03022 MRJP: Major royal jel 91.2 23 0.0005 37.7 19.5 167 458-632 35-253 (287)
452 PF11725 AvrE: Pathogenicity f 90.8 37 0.00081 43.9 22.6 149 333-510 361-517 (1774)
453 TIGR03118 PEPCTERM_chp_1 conse 90.5 24 0.00053 36.8 23.8 253 617-888 25-307 (336)
454 PF08728 CRT10: CRT10; InterP 90.3 8.2 0.00018 45.7 15.9 174 806-1000 49-246 (717)
455 PF13449 Phytase-like: Esteras 89.9 33 0.00072 37.5 22.2 151 793-945 18-231 (326)
456 COG4257 Vgb Streptogramin lyas 89.9 25 0.00054 36.0 19.7 233 389-645 62-306 (353)
457 COG1520 FOG: WD40-like repeat 89.9 22 0.00048 39.7 19.1 202 850-1064 70-279 (370)
458 PF13449 Phytase-like: Esteras 89.9 18 0.00039 39.6 17.7 163 836-1000 20-249 (326)
459 PF14761 HPS3_N: Hermansky-Pud 89.6 18 0.00039 35.8 15.2 146 849-1000 29-214 (215)
460 TIGR03548 mutarot_permut cycli 89.5 32 0.00069 37.6 19.6 112 889-1005 72-199 (323)
461 KOG1900 Nuclear pore complex, 89.5 19 0.00042 45.0 18.5 153 847-1001 90-273 (1311)
462 PF10433 MMS1_N: Mono-function 89.4 50 0.0011 38.8 37.0 244 336-599 45-341 (504)
463 COG5167 VID27 Protein involved 89.4 17 0.00037 40.3 16.0 150 440-600 473-632 (776)
464 PF10214 Rrn6: RNA polymerase 89.3 67 0.0014 39.9 27.5 174 793-1002 78-278 (765)
465 PF10313 DUF2415: Uncharacteri 89.0 1.4 3.1E-05 30.6 5.1 32 836-867 1-34 (43)
466 PLN00033 photosystem II stabil 88.9 44 0.00096 37.4 32.6 150 881-1050 241-396 (398)
467 PF07250 Glyoxal_oxid_N: Glyox 88.7 19 0.00042 36.9 15.4 147 505-654 50-207 (243)
468 KOG2377 Uncharacterized conser 88.7 42 0.0009 36.9 19.8 141 394-541 28-173 (657)
469 PF10313 DUF2415: Uncharacteri 88.7 1.6 3.4E-05 30.4 5.1 32 389-420 1-35 (43)
470 PRK14131 N-acetylneuraminic ac 88.6 46 0.001 37.3 20.7 40 594-635 314-353 (376)
471 PF05935 Arylsulfotrans: Aryls 88.3 57 0.0012 37.9 23.4 193 448-647 116-370 (477)
472 PF11725 AvrE: Pathogenicity f 87.8 36 0.00077 44.0 19.4 135 853-996 618-768 (1774)
473 PF05935 Arylsulfotrans: Aryls 87.1 49 0.0011 38.4 19.6 147 856-1012 126-313 (477)
474 PF07569 Hira: TUP1-like enhan 86.8 2.6 5.7E-05 42.7 8.1 74 886-959 18-97 (219)
475 PLN02153 epithiospecifier prot 86.6 56 0.0012 36.0 21.3 113 889-1005 85-230 (341)
476 PF07569 Hira: TUP1-like enhan 86.2 4.7 0.0001 40.9 9.5 75 934-1009 16-104 (219)
477 COG3823 Glutamine cyclotransfe 86.1 11 0.00025 36.6 11.1 107 532-648 55-162 (262)
478 KOG1983 Tomosyn and related SN 86.1 12 0.00026 47.2 14.8 69 930-1004 200-268 (993)
479 COG5167 VID27 Protein involved 85.9 20 0.00043 39.8 14.1 142 804-957 477-632 (776)
480 COG5276 Uncharacterized conser 85.0 51 0.0011 34.2 26.0 72 571-646 87-158 (370)
481 PF02333 Phytase: Phytase; In 85.0 66 0.0014 35.4 23.4 188 449-646 70-292 (381)
482 TIGR03606 non_repeat_PQQ dehyd 84.7 23 0.0005 40.1 14.8 112 879-991 30-166 (454)
483 KOG1900 Nuclear pore complex, 84.6 19 0.00042 45.0 14.9 171 318-510 63-273 (1311)
484 KOG4460 Nuclear pore complex, 84.5 24 0.00052 39.4 14.0 38 572-609 167-207 (741)
485 KOG2247 WD40 repeat-containing 84.4 0.18 3.9E-06 54.7 -1.7 144 731-904 39-184 (615)
486 PLN02193 nitrile-specifier pro 84.3 89 0.0019 36.3 21.8 154 449-607 231-417 (470)
487 TIGR03548 mutarot_permut cycli 84.1 70 0.0015 34.9 21.3 70 490-559 123-198 (323)
488 PF10433 MMS1_N: Mono-function 84.0 96 0.0021 36.5 41.3 80 806-888 418-503 (504)
489 TIGR03606 non_repeat_PQQ dehyd 83.8 85 0.0018 35.7 28.0 62 330-400 25-90 (454)
490 PF02333 Phytase: Phytase; In 83.3 78 0.0017 34.9 20.6 197 847-1055 67-292 (381)
491 smart00036 CNH Domain found in 82.4 77 0.0017 34.2 24.5 238 734-1008 9-278 (302)
492 PF12657 TFIIIC_delta: Transcr 82.4 7.7 0.00017 37.8 8.9 31 879-909 86-122 (173)
493 PRK13613 lipoprotein LpqB; Pro 82.0 90 0.002 37.1 18.8 191 796-994 364-576 (599)
494 KOG4659 Uncharacterized conser 81.7 1.6E+02 0.0034 37.4 32.1 26 725-750 660-685 (1899)
495 PLN02153 epithiospecifier prot 81.7 89 0.0019 34.5 20.4 57 547-605 217-289 (341)
496 COG5276 Uncharacterized conser 80.6 76 0.0017 33.0 27.2 196 388-601 86-286 (370)
497 PF12768 Rax2: Cortical protei 80.5 35 0.00075 36.1 13.3 101 458-560 17-128 (281)
498 TIGR02276 beta_rpt_yvtn 40-res 80.5 7.6 0.00016 26.9 6.1 39 804-843 1-41 (42)
499 TIGR03547 muta_rot_YjhT mutatr 80.4 99 0.0021 34.1 19.1 228 402-636 21-332 (346)
500 PRK13614 lipoprotein LpqB; Pro 79.6 1.2E+02 0.0026 35.8 18.5 194 806-1003 312-521 (573)
No 1
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.6e-73 Score=565.33 Aligned_cols=493 Identities=21% Similarity=0.300 Sum_probs=417.4
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1084)
+.|++||+.|+|+.+||.+|+.+||.|+|+.++ .+.|.++|++|+|+.++..+..+...++.+ ..++.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 458999999999999999999999999999886 899999999999999999998875444433 4459999999999
Q ss_pred HhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccccchhccccccCCChHHHHHHHHHHHhhcccCcccccc
Q 001403 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK 161 (1084)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 161 (1084)
||++..+....|+.+||+.+.++. ++.++|++|+.-|..++-....+... .-.....|.+|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence 999999999999999999988885 68889999988776654322222111 111357899999999999999999
Q ss_pred ccCCCCcchHHHHHHHHhHHHHHhhCCCCCCCCCCCcccccCcCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCCCCC
Q 001403 162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT 241 (1084)
Q Consensus 162 ~~~~~~p~~rL~~Ll~qa~~~Q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (1084)
+|++||++||+||++||+++|.||| .....|||+||.|.+ .++ |+++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~qi------p~qt--------------- 216 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQI------PSQT--------------- 216 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------ccC------Cchh---------------
Confidence 9999999999999999999999999 455589999999987 333 3333
Q ss_pred CcccccccccCCCCCCccccccCCCCCCcCccCccccccccccccccccCccccCCCCCCCCcchhhhcccccCCCccCC
Q 001403 242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321 (1084)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~~~~ 321 (1084)
T Consensus 217 -------------------------------------------------------------------------------- 216 (519)
T KOG0293|consen 217 -------------------------------------------------------------------------------- 216 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.++|..|+++||.+.||++|+|||+++.| .+..||++...........+.||..+|..+.||||.+
T Consensus 217 -----~qil~~htdEVWfl~FS~nGkyLAsaSkD---------~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr 282 (519)
T KOG0293|consen 217 -----WQILQDHTDEVWFLQFSHNGKYLASASKD---------STAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR 282 (519)
T ss_pred -----hhhHhhCCCcEEEEEEcCCCeeEeeccCC---------ceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC
Confidence 35689999999999999999999999999 9999999976555444456899999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-CcE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APV 480 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~-~~v 480 (1084)
||++|+.+..+.+||+.+|....... .+|...+.+++|.|||. .+++|+.|++|..||+ .|..+..+++-. ..|
T Consensus 283 yLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdl-Dgn~~~~W~gvr~~~v 357 (519)
T KOG0293|consen 283 YLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDL-DGNILGNWEGVRDPKV 357 (519)
T ss_pred eEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecC-Ccchhhccccccccee
Confidence 99999999999999999998766432 24668899999999999 7999999999999995 566677777654 568
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++++ ..||+++++.+.|..|++++.++..... +.....+|++++.|.|++++++.-. +..+++||++....+
T Consensus 358 ~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LWDl~e~~lv 430 (519)
T KOG0293|consen 358 HDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLWDLEENKLV 430 (519)
T ss_pred EEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEeecchhhHH
Confidence 88988 5588999999999999999987755543 3344568999999999999988765 555999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
+.+.||.....-|.++.-..+..++++|++|+.|+||+..+|+++..+.+|.. .|++|+|+| +-.++|++++||+|+
T Consensus 431 ~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVswNP~~p~m~ASasDDgtIR 508 (519)
T KOG0293|consen 431 RKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSWNPADPEMFASASDDGTIR 508 (519)
T ss_pred HHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEecCCCCHHHhhccCCCCeEE
Confidence 99999985555566554445668999999999999999999999999998865 699999999 667899999999999
Q ss_pred EEEcCC
Q 001403 640 ILETPE 645 (1084)
Q Consensus 640 iwd~~~ 645 (1084)
||-...
T Consensus 509 IWg~~~ 514 (519)
T KOG0293|consen 509 IWGPSD 514 (519)
T ss_pred EecCCc
Confidence 997653
No 2
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.2e-62 Score=472.17 Aligned_cols=486 Identities=18% Similarity=0.267 Sum_probs=399.1
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
..||||||.|||+|+.++.++++||+|+++++| ++.|.+.|..|+||.++..+.+| +++.+-+..||||.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHHH
Confidence 458999999999999999999999999999998 89999999999999999999998 44445678899999
Q ss_pred HHhhhcCCCHHHHHHHHHhh--ccccCCCCHHHHHHHHHHhccccccchhccccccCCChHHHHHHHHHHHhhcccCccc
Q 001403 81 FFEALDGHDIAKALNILKKD--LKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPIL 158 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~ 158 (1084)
.|||+|.++...|..+||+- +.-+.+.++++|-+|..||..+.++..+.+. ...++.|+. .|.+.++.+|-.
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV~V 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEVHV 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCceEE
Confidence 99999999999999999983 4445677899999999999999998877632 235666663 445555555442
Q ss_pred cccccCCCCcchHHHHHHHHhHHHHHhhCCCCCCCCCCCcccccCcCCCCCCCccCCCCCCCCCCCCCCCCCCccccCCC
Q 001403 159 QGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSS 238 (1084)
Q Consensus 159 ~~~~~~~~~p~~rL~~Ll~qa~~~Q~~~c~~~~~~~~~~sl~~~h~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (1084)
+||+||+.||+|||+||+++.+.|..+ .. +.|++.. .
T Consensus 155 --------VppSRLlaLlGQaLKWQqHQGLLPPGt--~i------------------------DLFRGkA---------A 191 (508)
T KOG0275|consen 155 --------VPPSRLLALLGQALKWQQHQGLLPPGT--TI------------------------DLFRGKA---------A 191 (508)
T ss_pred --------cChHHHHHHHHHHhhhHhhcCCCCCCc--ee------------------------eeccchh---------h
Confidence 899999999999999999987666411 00 2333311 0
Q ss_pred CCCCcccccccccCCCCCCccccccCCCCCCcCccCccccccccccccccccCccccCCCCCCCCcchhhhcccccCCCc
Q 001403 239 MLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETS 318 (1084)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~ 318 (1084)
+| ...+.+||-+.
T Consensus 192 -------------------------------------~K-----~~~Ee~~Pt~l------------------------- 204 (508)
T KOG0275|consen 192 -------------------------------------MK-----DQEEERYPTQL------------------------- 204 (508)
T ss_pred -------------------------------------hh-----hhHhhhchHHh-------------------------
Confidence 00 00112344332
Q ss_pred cCCCccceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-----eeecCCCCCeE
Q 001403 319 FSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-----ALVRDPGVSVN 392 (1084)
Q Consensus 319 ~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-----~~~~~h~~~V~ 392 (1084)
.+.++ +....+.|..|||||+||++|+.| |.|.||+..+++..... ..+--+.+.|.
T Consensus 205 --------~r~IKFg~KSh~EcA~FSPDgqyLvsgSvD---------GFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVl 267 (508)
T KOG0275|consen 205 --------ARSIKFGQKSHVECARFSPDGQYLVSGSVD---------GFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVL 267 (508)
T ss_pred --------hhheecccccchhheeeCCCCceEeecccc---------ceeeeehhccchhhhhhhhhhhcceeecccceE
Confidence 22222 445588999999999999999999 99999999877653211 12445788999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
|+.||.|...||+|+.||.|+||.+.+|.+++.+. ++|...|+|+.||.|+. .+++++.|.++++.-+++|+++..
T Consensus 268 ci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSGK~LKE 343 (508)
T KOG0275|consen 268 CISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSGKCLKE 343 (508)
T ss_pred EEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccchhHHH
Confidence 99999999999999999999999999999998432 28999999999999999 699999999999999999999999
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--CeEEEEEEcCCC-CEEEEEeeCCCCCeeE
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSANG-RRLFSCGTSKEGESFL 549 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d~-~~l~~~~~~~~~~~~i 549 (1084)
++||...|+...| .+||..+++++.||+|++|+..+.++..++...+ .+|.++..-|.+ ..+++|.. .+++
T Consensus 344 frGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr----sntv 417 (508)
T KOG0275|consen 344 FRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR----SNTV 417 (508)
T ss_pred hcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC----CCeE
Confidence 9999999999999 5688999999999999999999998877776544 467787777744 56677754 6679
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
++.++. |+.++.+......++...+++.+|.|.++++.++|+.++.|...+|.+..++..+.. .+..++-+|..+.+
T Consensus 418 ~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHPHqNll 494 (508)
T KOG0275|consen 418 YIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHPHQNLL 494 (508)
T ss_pred EEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCcccchh
Confidence 999875 788888877665667788889999999999999999999999999999999987765 47889999999999
Q ss_pred EEEECCCeEEEEE
Q 001403 630 AVIANENRIKILE 642 (1084)
Q Consensus 630 ~~~~~dg~i~iwd 642 (1084)
|+-+.||.+++|.
T Consensus 495 AsYsEDgllKLWk 507 (508)
T KOG0275|consen 495 ASYSEDGLLKLWK 507 (508)
T ss_pred hhhcccchhhhcC
Confidence 9999999999994
No 3
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.8e-59 Score=495.59 Aligned_cols=578 Identities=18% Similarity=0.247 Sum_probs=493.4
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~ 419 (1084)
++||++|+.|++..- ..|.+-|+.++...+.. .-.+....+++++.+||+++|++++....+++|++.+
T Consensus 25 ~~~s~nG~~L~t~~~----------d~Vi~idv~t~~~~l~s-~~~ed~d~ita~~l~~d~~~L~~a~rs~llrv~~L~t 93 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACG----------DRVIIIDVATGSIALPS-GSNEDEDEITALALTPDEEVLVTASRSQLLRVWSLPT 93 (775)
T ss_pred eeECCCCCEEEEecC----------ceEEEEEccCCceeccc-CCccchhhhheeeecCCccEEEEeeccceEEEEEccc
Confidence 899999999999532 45888888887764222 2344567899999999999999999999999999999
Q ss_pred Cccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe
Q 001403 420 GSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498 (1084)
Q Consensus 420 ~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 498 (1084)
|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|+|..+...|++|.
T Consensus 94 gk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 94 GKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred chHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccchhheeecC
Confidence 98877 5666 999999999999997 89999999999999999999999999999999999999988888899999
Q ss_pred cCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 499 VDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.|+++++||+..... ......|...+++++|++|+..+++++. +..+.+||+.+.+....++..+ .+.++.
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye----~~E~vv 240 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE----SLESVV 240 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh----heeeEE
Confidence 999999999996554 6678889999999999999999999986 6779999998877777776654 677777
Q ss_pred EcCC-----CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 578 FDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 578 ~s~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
+-++ +.+++++|++|.+++||.+++++........ .+.+..+...+....++..+.|..+.++|..+.+....+
T Consensus 241 ~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 241 RLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred EechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 8777 6799999999999999999998887665443 223666666666667777888999999999999999999
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEE
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 732 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 732 (1084)
-|..+.|..+.|- .|+...++.++..+.+|+|+.. ...|..+ .+|...|.++
T Consensus 320 vG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~GH~e~vlSL 371 (775)
T KOG0319|consen 320 VGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----PGHTEAVLSL 371 (775)
T ss_pred cCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----eCchhheeee
Confidence 9999999888775 4677888888899999999654 3344422 4699999999
Q ss_pred EEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC-CEEEE
Q 001403 733 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFS 811 (1084)
Q Consensus 733 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~ 811 (1084)
....+|..|++++.|..+++|.++.+.. .....-...+|...|.+++++..+ .++++
T Consensus 372 ~~~~~g~llat~sKD~svilWr~~~~~~----------------------~~~~~a~~~gH~~svgava~~~~~asffvs 429 (775)
T KOG0319|consen 372 DVWSSGDLLATGSKDKSVILWRLNNNCS----------------------KSLCVAQANGHTNSVGAVAGSKLGASFFVS 429 (775)
T ss_pred eecccCcEEEEecCCceEEEEEecCCcc----------------------hhhhhhhhcccccccceeeecccCccEEEE
Confidence 9888889999999999999998743211 000001122599999999998766 46777
Q ss_pred Ee-CCeEEEEEcCCceeE---------EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 812 AS-GGVISLYIVMTFKTI---------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 812 ~s-dg~i~vwd~~~~~~~---------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
++ |.++++|++...+.. .+...|...|++++++| +.+++|||++|++.+||+++.+....++.||...|
T Consensus 430 vS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGv 508 (775)
T KOG0319|consen 430 VSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGV 508 (775)
T ss_pred ecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEEEeeCCccce
Confidence 77 899999999752211 12346889999999999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
.++.|+|..+.|||+|.|++|+||.+++ ..|+++++||.. .|..+.|-.+|+.|++ ++||-+++|++++++
T Consensus 509 w~V~Fs~~dq~laT~SgD~TvKIW~is~-----fSClkT~eGH~~---aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 509 WCVSFSKNDQLLATCSGDKTVKIWSIST-----FSCLKTFEGHTS---AVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred EEEEeccccceeEeccCCceEEEEEecc-----ceeeeeecCccc---eeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 9999999999999999999999999999 458999999987 8999999999999999 699999999999999
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|... +..|..+|+++..++++.+++||+.||.|.+|.=.+.
T Consensus 581 C~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 581 CEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred hhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 9998 6789999999999999999999999999999975543
No 4
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=1.1e-55 Score=470.96 Aligned_cols=583 Identities=14% Similarity=0.187 Sum_probs=473.6
Q ss_pred CCCCCCcchhhhcccccCCCccCCCccce-ee-ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTV-AQ-TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC 375 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p~~~-~~-~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~ 375 (1084)
..|+++++.+...+...... ++.-+... +. .-.+..+.+++++.+||+.+|+++... ..+++|++.++
T Consensus 25 ~~~s~nG~~L~t~~~d~Vi~-idv~t~~~~l~s~~~ed~d~ita~~l~~d~~~L~~a~rs---------~llrv~~L~tg 94 (775)
T KOG0319|consen 25 VAWSSNGQHLYTACGDRVII-IDVATGSIALPSGSNEDEDEITALALTPDEEVLVTASRS---------QLLRVWSLPTG 94 (775)
T ss_pred eeECCCCCEEEEecCceEEE-EEccCCceecccCCccchhhhheeeecCCccEEEEeecc---------ceEEEEEcccc
Confidence 78889988887776531100 00001111 11 123456789999999999999997655 89999999998
Q ss_pred cccceeeeecC-CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 376 SMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 376 ~~~~~~~~~~~-h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
..... +.. |+.+|.-++|+|.|..||+|+.|+.|+|||+..+.+.. .|+||.+.|.++.|.|+-...+|++|+
T Consensus 95 k~irs---wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~ 168 (775)
T KOG0319|consen 95 KLIRS---WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGA 168 (775)
T ss_pred hHhHh---HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecC
Confidence 55433 333 99999999999999999999999999999999987665 899999999999999998866799999
Q ss_pred CCCcEEEEECCCCce-eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC-
Q 001403 455 DDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN- 532 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d- 532 (1084)
.|+++++||+.++.. +.++..|.+.|++++|. +|+..+++++.|..+.+||+..-+.....+.. ..+.++.+-++
T Consensus 169 ~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~--~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~y-e~~E~vv~l~~~ 245 (775)
T KOG0319|consen 169 TDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS--EDSLELLSVGRDKVIIVWDLVQYKKLKTLPLY-ESLESVVRLREE 245 (775)
T ss_pred CCceEEEEEcccCchHHHHHHhhhhheeeeeec--cCCceEEEeccCcEEEEeehhhhhhhheechh-hheeeEEEechh
Confidence 999999999996654 88899999999999995 46789999999999999999655544444322 35666777666
Q ss_pred ----CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 533 ----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 533 ----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
|.++++++. ++.+++||..+++++....... ...+..+...+....++....|..+.++|.++.+....+
T Consensus 246 ~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~i 319 (775)
T KOG0319|consen 246 LGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQI 319 (775)
T ss_pred cCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccceEEEEEccccEEehhh
Confidence 678888875 7789999999998876655443 233666677777778888888999999999999999888
Q ss_pred cCCCCCCCcceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCC
Q 001403 609 DAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 687 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s 687 (1084)
-+... .|..++|- |+.++++++++.+.+++|+..+..+. .+.+|.+.|.++...
T Consensus 320 vG~nd--EI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~---------------------- 374 (775)
T KOG0319|consen 320 VGYND--EILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW---------------------- 374 (775)
T ss_pred cCCch--hheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec----------------------
Confidence 75543 58888765 67899999999999999998887666 889999999888743
Q ss_pred CCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCC-eEEEeecCCceEEeeccCCccCcCccc
Q 001403 688 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 688 ~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
..|.++++++.|+++++|.++... ..........+|.+.|.+++++..+. .+++++.|+++++|+++..+....
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~--~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--- 449 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNC--SKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--- 449 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCc--chhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc---
Confidence 456789999999999999883211 11112223357999999999987664 567888899999999986221100
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+. ..........|...|+|++++|+.+++|+|+ |.+.++|+++.+....++.+|...+.++.|+|
T Consensus 450 -----~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~ 515 (775)
T KOG0319|consen 450 -----PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSK 515 (775)
T ss_pred -----cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEecc
Confidence 01 1111122335999999999999999999999 89999999999999999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 925 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 925 (1084)
..+++|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|++++++ |....+.|.
T Consensus 516 -~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~e-----C~~tlD~H~ 589 (775)
T KOG0319|consen 516 -NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNE-----CEMTLDAHN 589 (775)
T ss_pred -ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchh-----hhhhhhhcc
Confidence 88999999999999999999999999999999999999999999999999999999999999955 788888988
Q ss_pred cCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCC
Q 001403 926 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE 958 (1084)
Q Consensus 926 ~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~ 958 (1084)
. .|++++.+|++.++++ +.|+.|.+|.=.+
T Consensus 590 D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 590 D---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred c---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence 7 9999999999999998 5899999996443
No 5
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=1.1e-51 Score=423.29 Aligned_cols=573 Identities=15% Similarity=0.198 Sum_probs=456.8
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~ 419 (1084)
+.-.|.|..++.. .| +.|.+-+++..... .++.+|...++-..|||.|-|+|+|...|+|+|||...
T Consensus 24 ig~dpkgd~ilY~-----nG-----ksv~ir~i~~~~~~---~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~ 90 (603)
T KOG0318|consen 24 IGGDPKGDNILYT-----NG-----KSVIIRNIDNPASV---DIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ 90 (603)
T ss_pred eccCCCCCeEEEe-----CC-----CEEEEEECCCccce---eeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC
Confidence 4446777777763 12 67788888765543 34788999999999999999999999999999999887
Q ss_pred CccccceeeeecccccEeEEEeecCCCcEEEEEEe--CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE
Q 001403 420 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 420 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~--~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~ 497 (1084)
.+.+- ..++..-.++|..++|+.|+++ ++..+ .++-.+++-.++|..+.++.||...|+++.|-|+.. -.++++
T Consensus 91 ~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~KpsRP-fRi~T~ 166 (603)
T KOG0318|consen 91 KEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFKPSRP-FRIATG 166 (603)
T ss_pred cceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeeccCCCc-eEEEec
Confidence 44322 2256677889999999999995 44444 344444444458999999999999999999977643 689999
Q ss_pred ecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 498 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
+.|++|.+|+=...+-...+..|..-|.++.|+|||.++++++. ++.+++||-.+|+.+..+.....|.+.|.+++
T Consensus 167 sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aHkGsIfals 242 (603)
T KOG0318|consen 167 SDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAHKGSIFALS 242 (603)
T ss_pred cCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCccccEEEEE
Confidence 99999999987766777778888889999999999999999987 66799999999999999995555559999999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC-cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE-NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 656 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~-v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 656 (1084)
|+||+..+++++.|.+++|||+.+.++++++........ ...+.|. +..|++.+.+|.|.+++......+..+.+|.
T Consensus 243 WsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn 320 (603)
T KOG0318|consen 243 WSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN 320 (603)
T ss_pred ECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc
Confidence 999999999999999999999999999999986654211 2234444 6689999999999999999999999999999
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEec
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 736 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 736 (1084)
..|+++..+ ++++++.+++.||.|.-|+...+.... +....|...|.+++.+.
T Consensus 321 K~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~-----~~g~~h~nqI~~~~~~~ 373 (603)
T KOG0318|consen 321 KSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDR-----LAGKGHTNQIKGMAASE 373 (603)
T ss_pred cceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCccccc-----cccccccceEEEEeecC
Confidence 999999997 678899999999999999987544332 22345899999999988
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCe
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGV 816 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~ 816 (1084)
.+. +++++.|.++++.++..+....... .. ......+++..+++.+++.+.++.
T Consensus 374 ~~~-~~t~g~Dd~l~~~~~~~~~~t~~~~--------------------~~-----lg~QP~~lav~~d~~~avv~~~~~ 427 (603)
T KOG0318|consen 374 SGE-LFTIGWDDTLRVISLKDNGYTKSEV--------------------VK-----LGSQPKGLAVLSDGGTAVVACISD 427 (603)
T ss_pred CCc-EEEEecCCeEEEEecccCcccccce--------------------ee-----cCCCceeEEEcCCCCEEEEEecCc
Confidence 666 8888888899887764432211000 01 123344899999988888888766
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee--eeecccccCEEEEEEcCCCCEEE
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTGLVFSDALNILV 894 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~--~~l~~h~~~V~~l~~spd~~~l~ 894 (1084)
|.+..-.++ ..+.. ..-...++|++| ++..+|+|++||.|+||.+..+++. ..+..|.++|+++++|||+.+||
T Consensus 428 iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla 503 (603)
T KOG0318|consen 428 IVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLA 503 (603)
T ss_pred EEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEE
Confidence 666552222 22222 334678999999 9999999999999999999876543 34567999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCE
Q 001403 895 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI 973 (1084)
Q Consensus 895 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v 973 (1084)
++...+.|.+||+.+.+.... ...-|.. .|.+++|||+.+++|+| -|..|.||+++...........|...|
T Consensus 504 ~~Da~rkvv~yd~~s~~~~~~----~w~FHta---kI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gV 576 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVKTN----RWAFHTA---KINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGV 576 (603)
T ss_pred EeccCCcEEEEEcccCceecc----eeeeeee---eEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCc
Confidence 999999999999999764221 1112333 79999999999999995 789999999998776666678898889
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 974 SQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+.+.|..+ ..|++++.|..|++|++.
T Consensus 577 n~v~wlde-~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 577 NSVAWLDE-STVVSSGQDANIKVWNVT 602 (603)
T ss_pred eeEEEecC-ceEEeccCcceeEEeccc
Confidence 99999755 578889999999999975
No 6
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8.6e-50 Score=425.80 Aligned_cols=581 Identities=16% Similarity=0.200 Sum_probs=446.0
Q ss_pred CCCCCCCc-chhhhcccccCCCccCCCccceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 297 IPDYSPKS-SLKKEMFQSFGETSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 297 ~~~fsP~~-s~~~~~f~~~~~~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
.++|+|++ |++...= +...+.++.++...+|. .+...|.+++.||||.+|++.--. |...+-.+..
T Consensus 19 nl~ft~dG~sviSPvG---Nrvsv~dLknN~S~Tl~~e~~~NI~~ialSp~g~lllavdE~---------g~~~lvs~~~ 86 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVG---NRVSVFDLKNNKSYTLPLETRYNITRIALSPDGTLLLAVDER---------GRALLVSLLS 86 (893)
T ss_pred cEEECCCCCEEEeccC---CEEEEEEccCCcceeEEeecCCceEEEEeCCCceEEEEEcCC---------CcEEEEeccc
Confidence 47788885 3332211 11234455566666666 667799999999999999985322 4445545544
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCCCcEE
Q 001403 375 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQIS 449 (1084)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~ 449 (1084)
........ -+.+|.|+.|||||+++|+|..+ .+.||....... .....++.+|...|.++.|+.|.+ +
T Consensus 87 r~Vlh~f~----fk~~v~~i~fSPng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~ 159 (893)
T KOG0291|consen 87 RSVLHRFN----FKRGVGAIKFSPNGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--L 159 (893)
T ss_pred ceeeEEEe----ecCccceEEECCCCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--e
Confidence 33332221 35799999999999999998765 599998764322 223346678999999999999999 8
Q ss_pred EEEEeCCCcEEEEECCCCce--eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC----------------
Q 001403 450 VITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---------------- 511 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~--~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---------------- 511 (1084)
+++|+.|.++++|+++..+- .+.+.+|.+.|.++-| ..+...+++.+.||.+.+|..+..
T Consensus 160 l~~gsrD~s~rl~~v~~~k~~~~~~l~gHkd~VvacfF--~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d 237 (893)
T KOG0291|consen 160 LVTGSRDLSARLFGVDGNKNLFTYALNGHKDYVVACFF--GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDD 237 (893)
T ss_pred EEeccccceEEEEEeccccccceEeccCCCcceEEEEe--ccCcceEEEEecCceEEEEEecCCCccccccccccccccc
Confidence 99999999999999886655 6778999999999888 446678999999999999987610
Q ss_pred -------Cc-----------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 512 -------GA-----------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 512 -------~~-----------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
+. +.-+......+++.+|++..+.|+++-. .+...+|++....+++.+.-.. .+|
T Consensus 238 ~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~---~~I 310 (893)
T KOG0291|consen 238 EEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISD---QKI 310 (893)
T ss_pred ccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeeccc---cee
Confidence 11 0111223357899999999999999876 5558899999999999888766 789
Q ss_pred EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 574 SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 574 ~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
..++|+..|.+++.|+. -|.+-||+..+..-+...++| ...+.+++++|||+++|+|++||.|+|||..++-++.++
T Consensus 311 ~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH--~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTF 388 (893)
T KOG0291|consen 311 LTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGH--SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTF 388 (893)
T ss_pred eEEEecccCCEEEEcCCccceEEEEEeeccceeeecccc--ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEe
Confidence 99999999999999775 489999999987776666644 557999999999999999999999999999988777666
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEE
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL 732 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l 732 (1084)
.. |+..++.+
T Consensus 389 te----------------------------------------------------------------------Hts~Vt~v 398 (893)
T KOG0291|consen 389 TE----------------------------------------------------------------------HTSGVTAV 398 (893)
T ss_pred cc----------------------------------------------------------------------CCCceEEE
Confidence 53 55667778
Q ss_pred EEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE
Q 001403 733 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA 812 (1084)
Q Consensus 733 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 812 (1084)
.|+..|+.+++++-||+|+.||+... .+..++..+ ......|++..|.|..+.+|
T Consensus 399 ~f~~~g~~llssSLDGtVRAwDlkRY----------------------rNfRTft~P---~p~QfscvavD~sGelV~AG 453 (893)
T KOG0291|consen 399 QFTARGNVLLSSSLDGTVRAWDLKRY----------------------RNFRTFTSP---EPIQFSCVAVDPSGELVCAG 453 (893)
T ss_pred EEEecCCEEEEeecCCeEEeeeeccc----------------------ceeeeecCC---CceeeeEEEEcCCCCEEEee
Confidence 88888888888888998888876543 223333322 34566899999999999988
Q ss_pred e-C-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCC
Q 001403 813 S-G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDA 889 (1084)
Q Consensus 813 s-d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd 889 (1084)
+ | -.|.+|++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-.. ..+.+++ +...+..++|+||
T Consensus 454 ~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl~-i~sdvl~vsfrPd 531 (893)
T KOG0291|consen 454 AQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETLE-IRSDVLAVSFRPD 531 (893)
T ss_pred ccceEEEEEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeEe-eccceeEEEEcCC
Confidence 8 4 4599999999999999999999999999999 8999999999999999999764 3445555 7778999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeee----eee--------ecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEc
Q 001403 890 LNILVSSGGDAQIFVWDVDGWGIQTC----RSL--------QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 956 (1084)
Q Consensus 890 ~~~l~s~s~dg~I~iwd~~~~~~~~~----~~~--------~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~ 956 (1084)
|+.||+++-||.|.+||+..+..... +-+ .....+.......+.+++|+||..+++ |..+.|++|++
T Consensus 532 G~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v 611 (893)
T KOG0291|consen 532 GKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDV 611 (893)
T ss_pred CCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEEC
Confidence 99999999999999999987543210 000 000111122247899999999999998 57788999999
Q ss_pred CCcceeeEeecC----------------------------------------------------C---CCCEEEEEEccC
Q 001403 957 EELTCLKQWFPI----------------------------------------------------S---SVPISQATFSCD 981 (1084)
Q Consensus 957 ~~~~~~~~~~~~----------------------------------------------------h---~~~v~~l~fs~d 981 (1084)
.++..++.+... + .-.|.++.|||.
T Consensus 612 ~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt 691 (893)
T KOG0291|consen 612 PEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT 691 (893)
T ss_pred chhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCC
Confidence 887665542111 0 124788999999
Q ss_pred CCEEEEEeCCCcEEEEEcCCCcee
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
|+-++.++..| +.||.+.+.-+.
T Consensus 692 graFAaatTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 692 GRAFAAATTEG-LLIYSLDTTILF 714 (893)
T ss_pred cCeeeeecccc-eEEEecCCceEE
Confidence 99999998887 788888776544
No 7
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.9e-49 Score=421.79 Aligned_cols=578 Identities=15% Similarity=0.208 Sum_probs=461.0
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
.+.|++||..+++-..+. |.++|+...+... -.-.+...|.+++.||+|. ++++..+.|...+-++.....++.
T Consensus 19 nl~ft~dG~sviSPvGNr-vsv~dLknN~S~T---l~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~ 92 (893)
T KOG0291|consen 19 NLVFTKDGNSVISPVGNR-VSVFDLKNNKSYT---LPLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR 92 (893)
T ss_pred cEEECCCCCEEEeccCCE-EEEEEccCCccee---EEeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence 488999999998876554 9999999875432 2225777899999999999 889999999999999998888888
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
+. ...+|.++.|+| ||.+++.+ ..+.+.+|....... ...+.++-..+.++.|+.|.+++++++.
T Consensus 93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr--- 165 (893)
T KOG0291|consen 93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR--- 165 (893)
T ss_pred Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence 76 677899999955 66666554 456899997654322 2345677779999999999999999986
Q ss_pred CCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC---------------------
Q 001403 545 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--------------------- 601 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--------------------- 601 (1084)
+..+++|+++..+- ...+.+|. +.|..+.|..+...+++.+.||.+.+|....
T Consensus 166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 67799999886555 56677777 9999999999999999999999999997761
Q ss_pred --CeE---------EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 602 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 602 --~~~---------~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
++. ....-.......+.+.+|++....|+++-..|...+|.++.-..+..+......|..++++..+
T Consensus 242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tG-- 319 (893)
T KOG0291|consen 242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTG-- 319 (893)
T ss_pred ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccC--
Confidence 111 0011111222458899999999999999999999999999999999999888899999888554
Q ss_pred eeeeccCceeEecCCCCCCCCccceeccc-CccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCc
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAE-NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 749 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d-~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 749 (1084)
.+++.|+.. |.+-+|+... ....+...+|...+.+++++|||+++++|+.||.
T Consensus 320 --------------------DWiA~g~~klgQLlVweWqs------EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgK 373 (893)
T KOG0291|consen 320 --------------------DWIAFGCSKLGQLLVWEWQS------ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGK 373 (893)
T ss_pred --------------------CEEEEcCCccceEEEEEeec------cceeeeccccccceeeEEECCCCcEEEeccCCCc
Confidence 444444433 6788888752 3344555679999999999999999999999998
Q ss_pred eEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeE
Q 001403 750 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI 828 (1084)
Q Consensus 750 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~ 828 (1084)
|+||| ..+|.|+.++. .|...|+.+.|+..|+.+++.+ ||+|+.||+...+..
T Consensus 374 VKvWn----------------------~~SgfC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNf 427 (893)
T KOG0291|consen 374 VKVWN----------------------TQSGFCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNF 427 (893)
T ss_pred EEEEe----------------------ccCceEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeeccccee
Confidence 88865 55667777765 3999999999999999999999 999999999999999
Q ss_pred EEEcCCC-CCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 829 LTIMPPS-PTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 829 ~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
+++..+. ....|++..| .|.++.+|+.|. .|++|++.+|+++..+.||.++|.+++|+|++..|||+|+|.+|++||
T Consensus 428 RTft~P~p~QfscvavD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~ 506 (893)
T KOG0291|consen 428 RTFTSPEPIQFSCVAVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWD 506 (893)
T ss_pred eeecCCCceeeeEEEEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEE
Confidence 9998765 3568999999 899999999887 899999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeec------------------
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFP------------------ 967 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~------------------ 967 (1084)
+-...... ..+... ..+..++|+|||+.||+ .-||.|.+||+..+.....+..
T Consensus 507 if~s~~~v-Etl~i~-------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~ 578 (893)
T KOG0291|consen 507 IFSSSGTV-ETLEIR-------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAEN 578 (893)
T ss_pred eeccCcee-eeEeec-------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhh
Confidence 97642111 112211 15899999999999999 5899999999987655432110
Q ss_pred -CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccc---------------------------------
Q 001403 968 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY--------------------------------- 1013 (1084)
Q Consensus 968 -~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~--------------------------------- 1013 (1084)
......+.+++|+||..+++|+....|.+|++.++-++.++.....
T Consensus 579 sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~ 658 (893)
T KOG0291|consen 579 SAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEG 658 (893)
T ss_pred cccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccc
Confidence 1156889999999999999999999999999999988877651111
Q ss_pred -----cCCCC----c----ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1014 -----LRPTT----S----CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1014 -----~~~~~----~----~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+|... . ...|....+.|+|. |.-++++++.|- .||.+
T Consensus 659 ~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPt-graFAaatTEGl-~IYsl 708 (893)
T KOG0291|consen 659 RIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPT-GRAFAAATTEGL-LIYSL 708 (893)
T ss_pred cccccCCccccCCccccccCceEEEEEEEECCC-cCeeeeecccce-EEEec
Confidence 00000 0 11367788999994 889999988883 44544
No 8
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.1e-49 Score=406.44 Aligned_cols=541 Identities=12% Similarity=0.189 Sum_probs=431.8
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 406 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~ 406 (1084)
.....+|...++-..|||.|-|+|+|-.. |+|+|||.......++.. +..-.++|..++|++|+++|++.
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~s---------G~vRIWdtt~~~hiLKne-f~v~aG~I~Di~Wd~ds~RI~av 121 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVS---------GKVRIWDTTQKEHILKNE-FQVLAGPIKDISWDFDSKRIAAV 121 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCc---------CcEEEEeccCcceeeeee-eeecccccccceeCCCCcEEEEE
Confidence 55678899999999999999999997444 999999998765555433 44456799999999999999987
Q ss_pred eCC--CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 407 YSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 407 ~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+.. ...+++-+++|..+. ++.||...|++++|-|.... .++||++|++|.+|+=.--+...+++.|..-|+++.
T Consensus 122 GEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 122 GEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVR 197 (603)
T ss_pred ecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccceeeEE
Confidence 643 233444444555455 78899999999999998765 899999999999998555555677888999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
|+| ||.++++++.||.+.+||=.+++....+. .|.+.|.+++|+||++.+++++. +.++++||+.+.++++
T Consensus 198 ysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~~slv~ 271 (603)
T KOG0318|consen 198 YSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVSTNSLVS 271 (603)
T ss_pred ECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeeccceEE
Confidence 955 78999999999999999999999988887 78889999999999999999987 6679999999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
++.....-.+....+.|. +..|++.+-+|+|.+++...+..+..+.+|.. .|++++.+||+++|++|+.||.|.-|
T Consensus 272 t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyDG~I~~W 347 (603)
T KOG0318|consen 272 TWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYDGHINSW 347 (603)
T ss_pred EeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccCceEEEE
Confidence 887655222344455565 56899999999999999999998899887755 69999999999999999999999999
Q ss_pred EcCCCCeeeec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 642 ETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 642 d~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
+..++..-... +.|...|.+++.+ ....+++.+.|.++++.++....-.....+.+
T Consensus 348 ~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~l 404 (603)
T KOG0318|consen 348 DSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGYTKSEVVKL 404 (603)
T ss_pred ecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcccccceeec
Confidence 99988666544 6788888888776 23457788888888888764332222221211
Q ss_pred CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE
Q 001403 721 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 800 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 800 (1084)
......++..+++..++.+...+.+.+-+... +... .......++
T Consensus 405 -----g~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~~~y~~s~v 449 (603)
T KOG0318|consen 405 -----GSQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----PIGYESSAV 449 (603)
T ss_pred -----CCCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----ccccccceE
Confidence 12334788888887666666554444322111 1111 134567899
Q ss_pred EecCCCCEEEEEe-CCeEEEEEcCCcee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecc
Q 001403 801 ALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEG 876 (1084)
Q Consensus 801 ~~s~dg~~l~~~s-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~ 876 (1084)
+++|++..+++|. |+.+++|.+..+.. ...+..|.++|++++||| |+.+||+|...+.+.+||+.+.+... .+.-
T Consensus 450 Av~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~~~~~~w~F 528 (603)
T KOG0318|consen 450 AVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASREVKTNRWAF 528 (603)
T ss_pred EEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCceecceeee
Confidence 9999999999998 79999999986553 345667999999999999 99999999999999999999987643 3344
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
|...|.+++|+|+.+++|||+-|..|.||+++... ..+.....|.. .|..+.|-.+...+-+|.|-.|++|.+
T Consensus 529 HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~Da~iK~W~v 601 (603)
T KOG0318|consen 529 HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQDANIKVWNV 601 (603)
T ss_pred eeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCcceeEEecc
Confidence 99999999999999999999999999999999733 22445555655 699999999888888899999999987
Q ss_pred C
Q 001403 957 E 957 (1084)
Q Consensus 957 ~ 957 (1084)
.
T Consensus 602 ~ 602 (603)
T KOG0318|consen 602 T 602 (603)
T ss_pred c
Confidence 4
No 9
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=3.5e-48 Score=413.29 Aligned_cols=568 Identities=15% Similarity=0.183 Sum_probs=442.8
Q ss_pred cCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc
Q 001403 343 HPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 343 spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
+..|+++|+.. ...|.+||+.++....... ...-...|+|++-+||.-.||+|..||.|+||+..++..
T Consensus 31 ~~~Gr~va~~a----------~E~vn~WdlRtge~~~~l~-~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif~~~s~~~ 99 (888)
T KOG0306|consen 31 SGKGRAVAVSA----------LEQVNIWDLRTGEIEKKLI-LLKKKAEVTCLRSSDDILLLAVGYADGSVQIFSLESEEI 99 (888)
T ss_pred cCCCcEEEEec----------cccEeEEeeecchhhhhhh-hhcccceEEEeeccCCcceEEEEecCceEEeeccCCCce
Confidence 34688888721 1679999999884332211 223446999999999999999999999999999998754
Q ss_pred ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCe
Q 001403 423 ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 502 (1084)
Q Consensus 423 ~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 502 (1084)
.. .+.+|..+|+++.|...|. .|+|||.|+.|.+||+-...-+.++.||.+.|+.+-|.. +..++++.+.|+.
T Consensus 100 ~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lvS~sKDs~ 172 (888)
T KOG0306|consen 100 LI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLVSVSKDSM 172 (888)
T ss_pred ee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEEEeccCce
Confidence 43 7889999999999999999 899999999999999998888999999999999988843 4579999999999
Q ss_pred EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-------e-----Eeeeeecccccc
Q 001403 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-------A-----IKRTYQGLQLQH 570 (1084)
Q Consensus 503 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-------~-----~~~~~~~~~~~~ 570 (1084)
|++||+++..+..+...+...++++++.+ +.+++++. ++.+.+|++... . ...++.-. ..
T Consensus 173 iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rq--sk 244 (888)
T KOG0306|consen 173 IKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTFIRQ--SK 244 (888)
T ss_pred EEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeeccceeeec--cC
Confidence 99999999999999999999999999988 67777765 455999988210 0 01111111 12
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE-------------EE--cC-----------------CCCCCCcc
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT-------------TI--DA-----------------GGGLPENP 618 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~-------------~~--~~-----------------~~~~~~v~ 618 (1084)
+....+...++++++++-+.|..+.++.+.+.+.+. .. +. -.....+.
T Consensus 245 ~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kik 324 (888)
T KOG0306|consen 245 GREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIK 324 (888)
T ss_pred CceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhhee
Confidence 345556677888899999999999999886532110 00 00 00112355
Q ss_pred eEEEecCCC---EEEEEECCCeEEEEEcCCCCee---------eeccccccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 619 RICFNKNGT---LLAVIANENRIKILETPESNSV---------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 619 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
++.|.|.+. .|+. -.++++..|.++..... -.+.+|...|.++.++.+
T Consensus 325 s~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d------------------- 384 (888)
T KOG0306|consen 325 SFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSD------------------- 384 (888)
T ss_pred EEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecC-------------------
Confidence 677777543 3333 56788888888752222 345678888888888733
Q ss_pred CCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc
Q 001403 687 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
...++ .+..+++++|+..+....... ..+.+.+..|-|.+++++.|..+|.+.+||+.....
T Consensus 385 ---~~~~~-Sga~~SikiWn~~t~kciRTi--------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l------ 446 (888)
T KOG0306|consen 385 ---SILLA-SGAGESIKIWNRDTLKCIRTI--------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASASL------ 446 (888)
T ss_pred ---ceeee-ecCCCcEEEEEccCcceeEEe--------ccccEEEEEecCCCceEEEeccCCceEEEEeehhhh------
Confidence 23333 334478999998743222111 334788899999999999999999999998765432
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCC-----ceeEE--------EEc
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT-----FKTIL--------TIM 832 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~-----~~~~~--------~~~ 832 (1084)
+-. . .+|.+.+..++.+||++.+++++ |.+|++||..- |...+ ++.
T Consensus 447 ----------------~Et--i--~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe 506 (888)
T KOG0306|consen 447 ----------------VET--I--RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE 506 (888)
T ss_pred ----------------hhh--h--hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe
Confidence 111 1 15999999999999999999998 89999999741 22211 222
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
-...|.|+.+|| |+++||++--|.+|+||-+++-+..-.+.||.-+|.|+..|||+++++|||.|+.|+||-++-|.
T Consensus 507 -l~ddvL~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD- 583 (888)
T KOG0306|consen 507 -LEDDVLCVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD- 583 (888)
T ss_pred -ccccEEEEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccch-
Confidence 346899999999 99999999999999999999999999999999999999999999999999999999999999976
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
|-+.+-+|.. .|.++.|-|...++.+ |.|+.|+-||....+++.. +.+|...|++++.+|+|.++++++.|
T Consensus 584 ----CHKS~fAHdD---Svm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~-L~~H~~ev~cLav~~~G~~vvs~shD 655 (888)
T KOG0306|consen 584 ----CHKSFFAHDD---SVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQK-LDGHHSEVWCLAVSPNGSFVVSSSHD 655 (888)
T ss_pred ----hhhhhhcccC---ceeEEEEcccceeEEEecCcceEEeechhhhhhhee-eccchheeeeeEEcCCCCeEEeccCC
Confidence 5555666665 8999999999888877 7999999999999999888 56899999999999999999999999
Q ss_pred CcEEEEEcCCCcee
Q 001403 992 GTLSIHEASNLEVQ 1005 (1084)
Q Consensus 992 g~i~vwd~~~~~~~ 1005 (1084)
.+|++|.-....++
T Consensus 656 ~sIRlwE~tde~~~ 669 (888)
T KOG0306|consen 656 KSIRLWERTDEILI 669 (888)
T ss_pred ceeEeeeccCccee
Confidence 99999997765443
No 10
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=6.1e-50 Score=394.08 Aligned_cols=333 Identities=20% Similarity=0.313 Sum_probs=303.0
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..|...+.||.+.|.|++|||+|++||+|+-| .++++||+.+....+. .++|...|.|++|||||+.|
T Consensus 105 trCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD---------~TvR~WD~~TeTp~~t---~KgH~~WVlcvawsPDgk~i 172 (480)
T KOG0271|consen 105 TRCSSSIAGHGEAVLSVQFSPTGSRLVTGSGD---------TTVRLWDLDTETPLFT---CKGHKNWVLCVAWSPDGKKI 172 (480)
T ss_pred ceeccccCCCCCcEEEEEecCCCceEEecCCC---------ceEEeeccCCCCccee---ecCCccEEEEEEECCCcchh
Confidence 56778899999999999999999999999766 9999999998877765 78999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-----CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-----d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
|+|+.||+|++||.++|+++.. .+.+|...|++++|-| ..+ +|++++.||+|+|||+..+.++..+.+|+.
T Consensus 173 ASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~~~lsgHT~ 248 (480)
T KOG0271|consen 173 ASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCVRTLSGHTA 248 (480)
T ss_pred hccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEEEEeccCcc
Confidence 9999999999999999987654 6889999999999965 556 799999999999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEc-----------CCC--------------
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANG-------------- 533 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~d~-------------- 533 (1084)
+|+|+.| .++ .++++++.|++|++|+...+.....+.+|.+.|..++.+ |.+
T Consensus 249 ~VTCvrw--GG~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al 325 (480)
T KOG0271|consen 249 SVTCVRW--GGE-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKAL 325 (480)
T ss_pred ceEEEEE--cCC-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHH
Confidence 9999999 333 499999999999999999988899999999999998887 223
Q ss_pred -----------CEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 534 -----------RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 534 -----------~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.+|++++. +.++.+|+... .+++..+.+|+ .-|+.+.|+||++++++++-|..|++||.++
T Consensus 326 ~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkSVkLW~g~t 398 (480)
T KOG0271|consen 326 ERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKSVKLWDGRT 398 (480)
T ss_pred HHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccceeeeeCCC
Confidence 34888875 77799999764 45788899999 8999999999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
|+.+..+.+|- ..|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++
T Consensus 399 Gk~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws---------------- 460 (480)
T KOG0271|consen 399 GKFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS---------------- 460 (480)
T ss_pred cchhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec----------------
Confidence 99999999664 479999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCccceecccCcccccc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~ 706 (1084)
|||..+++|+.|..+++|.
T Consensus 461 ------pDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 461 ------PDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred ------CCCceeecCCCceEEEeec
Confidence 7889999999999999995
No 11
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2e-47 Score=407.49 Aligned_cols=586 Identities=14% Similarity=0.142 Sum_probs=448.5
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
..|+++|+... ..|.+||+.+|+..+.+.. ......|+|++-++|.- +||.|..||.|+||+..++..+.++.+|.
T Consensus 32 ~~Gr~va~~a~-E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK 107 (888)
T KOG0306|consen 32 GKGRAVAVSAL-EQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHK 107 (888)
T ss_pred CCCcEEEEecc-ccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeecccc
Confidence 35887776433 3499999999965443322 23346899998888877 89999999999999999999999999999
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
..|+.+.| +..|..|++||.|+.|.+||+-.....+.+.+|...|+.+-|..+.+++++++. ++.|.+||+.+.
T Consensus 108 ~AVt~l~f--d~~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tq 181 (888)
T KOG0306|consen 108 AAVTTLKF--DKIGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQ 181 (888)
T ss_pred cceEEEEE--cccCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccc
Confidence 99999999 567889999999999999999999999999999999999999998999999986 788999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------e-----EEEEEcCCCCCCCcceEEEecC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------Q-----LLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~-----~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+..+.-.|. +.++++++.+ +.+++++.|+.+++|++... . ...++...+ ......++..++
T Consensus 182 hCf~Thvd~r---~Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqs-k~R~i~l~~d~s 255 (888)
T KOG0306|consen 182 HCFETHVDHR---GEIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQS-KGREINLVTDFS 255 (888)
T ss_pred eeeeEEeccc---ceEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeecc-CCceeEEeecCc
Confidence 9998888888 9999999987 78999999999999998321 1 111111111 122445667778
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeec--------ccccc--c-eeEEEEc------CCCceeeeeccCceeEecCCCCC
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAA--------GVLSD--N-LRKLSVN------PISTVTGAGIANGSVSVNEDPKE 688 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~~~--~-i~~~~~~------p~~~~~~~~~~~~~~~~~~~~s~ 688 (1084)
++++++-+.|..+.++.+.+...+... +.+.. . -..+..+ +.... -......++.+.+. +
T Consensus 256 ~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~i-r~~~kiks~dv~~~--~ 332 (888)
T KOG0306|consen 256 DRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETI-RTSAKIKSFDVTPS--G 332 (888)
T ss_pred ccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhe-echhheeEEEEEec--C
Confidence 889999999999999988754222111 00000 0 0000000 00000 00000001111111 1
Q ss_pred CC-CccceecccCccccccceeecCc---cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 689 DV-KPEISVEAENKSEVEKPLFARPS---ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 689 ~~-~~l~~~~~d~~i~~w~~~~~~~~---~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
.. +.++. -.++++..|.++..... ....-.+...+|...|.++++|.+...+++++. +.+++
T Consensus 333 ~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~Siki------------ 398 (888)
T KOG0306|consen 333 GTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKI------------ 398 (888)
T ss_pred CcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEE------------
Confidence 11 23333 55677777776652111 112222334579999999999999875555544 45555
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEE
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF 843 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 843 (1084)
|+..+.+|+.+.. ...+.+..|-|.++++++|. .|.+.+||+.+...+.+++.|.+.|.+++.
T Consensus 399 ----------Wn~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~ 462 (888)
T KOG0306|consen 399 ----------WNRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISL 462 (888)
T ss_pred ----------EEccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeee
Confidence 5566677676653 34788999999999999998 599999999999999999999999999999
Q ss_pred cCCCCcEEEEEeCCCeEEEEEcCC-----ceee--------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001403 844 NPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 844 s~~d~~~la~g~~dg~i~iwd~~~-----~~~~--------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
+| |++.+++|+.|.+|++||..- |... .+++ -.+.|.|+.+||||++||.+=-|.+|+||-+++
T Consensus 463 ~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDt- 539 (888)
T KOG0306|consen 463 SP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDT- 539 (888)
T ss_pred cC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEEEecc-
Confidence 99 899999999999999999752 1111 1122 356799999999999999999999999999998
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
.+..-.+.||.- +|.++..|||++++++ +.|.+|++|-+.-|.|...++ +|...|.++.|.|+..+++++|
T Consensus 540 ----lKFflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~F~P~~~~FFt~g 611 (888)
T KOG0306|consen 540 ----LKFFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQFLPKTHLFFTCG 611 (888)
T ss_pred ----eeeeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhh-cccCceeEEEEcccceeEEEec
Confidence 556667788887 9999999999999999 589999999999999999855 7999999999999999999999
Q ss_pred CCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 990 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
.|+.|+-||-...+.+..+.. |...|+ |++.+| +|.++++++.|.+|++|+..+
T Consensus 612 KD~kvKqWDg~kFe~iq~L~~--------H~~ev~--cLav~~-~G~~vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 612 KDGKVKQWDGEKFEEIQKLDG--------HHSEVW--CLAVSP-NGSFVVSSSHDKSIRLWERTD 665 (888)
T ss_pred CcceEEeechhhhhhheeecc--------chheee--eeEEcC-CCCeEEeccCCceeEeeeccC
Confidence 999999999999988877661 345566 456667 589999999999999999766
No 12
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.8e-50 Score=392.61 Aligned_cols=367 Identities=20% Similarity=0.289 Sum_probs=294.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.||.+.|.|++|||+|+.||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|++|+.||+|++||
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd 185 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD 185 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence 77899999999999999999999999999999999986554 7889999999999999999 899999999999999
Q ss_pred CCCCcee-eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~g~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++|+++ ..+.+|...|++++|.|-. ..|..++|++++.
T Consensus 186 pktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk- 225 (480)
T KOG0271|consen 186 PKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK- 225 (480)
T ss_pred CCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC-
Confidence 9999876 6789999999999996532 2355667777764
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++.++|||+..+.++..+.+|. .+|+|+.|.-+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.
T Consensus 226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal 296 (480)
T KOG0271|consen 226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL 296 (480)
T ss_pred ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence 5558888888888999999999 999999998764 899999999999999999999999998877 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
+.|- .|-+|..|.+=+-....+...-..+... ..
T Consensus 297 sTdy-~LRtgaf~~t~~~~~~~se~~~~Al~rY-~~-------------------------------------------- 330 (480)
T KOG0271|consen 297 STDY-VLRTGAFDHTGRKPKSFSEEQKKALERY-EA-------------------------------------------- 330 (480)
T ss_pred cchh-hhhccccccccccCCChHHHHHHHHHHH-HH--------------------------------------------
Confidence 7543 2223332221111000000000000000 00
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 782 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1084)
..-..+.++++++.|.++.+|+-... .++
T Consensus 331 ------------------------------~~~~~~erlVSgsDd~tlflW~p~~~---------------------kkp 359 (480)
T KOG0271|consen 331 ------------------------------VLKDSGERLVSGSDDFTLFLWNPFKS---------------------KKP 359 (480)
T ss_pred ------------------------------hhccCcceeEEecCCceEEEeccccc---------------------ccc
Confidence 00012345666666666666652111 000
Q ss_pred cccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001403 783 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 783 ~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~ 861 (1084)
+. .+. +|..-|+.+.||||++++|+++ |..|++||..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.+++
T Consensus 360 i~--rmt--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK 434 (480)
T KOG0271|consen 360 IT--RMT--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK 434 (480)
T ss_pred hh--hhh--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence 11 112 4999999999999999999999 99999999999999999999999999999999 999999999999999
Q ss_pred EEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 862 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 862 iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
+|++.+.++...+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus 435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999999999995
No 13
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=4.2e-43 Score=370.93 Aligned_cols=623 Identities=13% Similarity=0.145 Sum_probs=421.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCCEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--SKHIVQ 413 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~--~dg~v~ 413 (1084)
.-..++.+|-..++|.- +...|.+|+...+.+.+. +..|..+++|++||++|+|+|+|- ....++
T Consensus 39 ~~~gLa~~p~Sgl~aYp----------AGCvVVlfn~~~~tQ~hl---vnssRk~~t~vAfS~~GryvatGEcG~~pa~k 105 (1080)
T KOG1408|consen 39 NANGLASVPCSGLCAYP----------AGCVVVLFNVDSCTQSHL---VNSSRKPLTCVAFSQNGRYVATGECGRTPASK 105 (1080)
T ss_pred cCCcccccccccceeec----------cCcEEEEEcccccchhhe---ecccCcceeEEEEcCCCcEEEecccCCCccce
Confidence 34567777877777762 127899999988776543 566888999999999999999984 566799
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
||++.....+. ++..|+..|+|++|+|.++ ++++.+. |-.|.+||++.......- .-...|..++| +++|
T Consensus 106 Vw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~f--sEdg 177 (1080)
T KOG1408|consen 106 VWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVAF--SEDG 177 (1080)
T ss_pred eeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEEE--ccCC
Confidence 99999876555 7889999999999999999 7777664 667889987754332221 13456788888 6788
Q ss_pred cEEEEEecCCeEEEEECCCCCceE---eecCCCC--------eEEEEEEc----CCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--------GCTRMAYS----ANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~--------~i~~~~~s----~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
.++++.+ ...|++|.++...... .+.+... ...+++.- .+..+.++. .|.+.-+ .+
T Consensus 178 SYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvEF--Ss 248 (1080)
T KOG1408|consen 178 SYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVEF--SS 248 (1080)
T ss_pred ceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceeee--ch
Confidence 8988876 4689999988665211 1111100 00111110 011111111 1112111 11
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC----------------------CCCC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA----------------------GGGL 614 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~~~~ 614 (1084)
.+++..+-.-. .....|++.+ .++|++|+.+|.|++|+..+-....+++. ....
T Consensus 249 RRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~f 324 (1080)
T KOG1408|consen 249 RRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIF 324 (1080)
T ss_pred hhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCcccC
Confidence 22211111111 1234555554 57999999999999999877544443321 1122
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee---eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
+...++.|++....|.+...|..++|||+..-..+ ..+-.|...|+.+..-|...... .... .|. .
T Consensus 325 PD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac-----lp~-~ 393 (1080)
T KOG1408|consen 325 PDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC-----LPR-G 393 (1080)
T ss_pred CceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc-----CCc-c
Confidence 33456889999999999999999999999865433 33446777777776655321100 0000 122 2
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
-+++++.|++||+|++........+... .++.+-..++. .|++..+.. ...
T Consensus 394 cF~TCSsD~TIRlW~l~~ctnn~vyrRN-------------ils~~l~ki~y--~d~~~q~~~--------------d~~ 444 (1080)
T KOG1408|consen 394 CFTTCSSDGTIRLWDLAFCTNNQVYRRN-------------ILSANLSKIPY--EDSTQQIMH--------------DAS 444 (1080)
T ss_pred ceeEecCCCcEEEeecccccccceeecc-------------cchhhhhcCcc--ccCchhhhh--------------hcc
Confidence 3889999999999998753322221110 01111100111 111110000 000
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC--CC
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH--DN 848 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~--d~ 848 (1084)
.-++|-.... . ......+.++++||+|++||+|+ .|.++||++...+....+..|..+|.|+.||.. ..
T Consensus 445 ~~~fdka~~s------~--~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~ 516 (1080)
T KOG1408|consen 445 AGIFDKALVS------T--CDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTN 516 (1080)
T ss_pred CCcccccchh------h--cCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhh
Confidence 1111111000 0 12566889999999999999998 599999999999999999999999999999863 35
Q ss_pred cEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc
Q 001403 849 NVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 925 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd~--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~ 925 (1084)
++||+++.|.-|+|||+... .++.++.+|+..|+++.|.-.| ..++++|.|+.|.+--...... . .+.....+.
T Consensus 517 kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~--g-~~f~r~t~t 593 (1080)
T KOG1408|consen 517 KLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASS--G-RLFPRHTQT 593 (1080)
T ss_pred HhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccC--c-eeccccccc
Confidence 79999999999999999753 5778999999999999999887 7899999999776533331110 0 111111111
Q ss_pred cCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 926 TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 926 ~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
.....+..++..|..+++++ +.|..|+||++.+|+..+.+...| .+..-.+...|.|-||++...|.++.++|..+|
T Consensus 594 ~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg 673 (1080)
T KOG1408|consen 594 LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG 673 (1080)
T ss_pred cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc
Confidence 11235889999999999999 699999999999999988866544 577788899999999999999999999999999
Q ss_pred ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1003 EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1003 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
++++++..+.-..++ +.|.+ |...|++++.||+|.||.++-
T Consensus 674 EcvA~m~GHsE~VTG----------~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 674 ECVAQMTGHSEAVTG----------VKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhhhhhcCcchheee----------eeecc-cchhheeecCCceEEEEECch
Confidence 999988855444444 77898 689999999999999999864
No 14
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=3.4e-41 Score=356.48 Aligned_cols=511 Identities=15% Similarity=0.184 Sum_probs=382.8
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+.+..|...++++||||+|+|+|+ |++.....++||++.......+ +.+|+-.|+|++|+|.++|+++.+
T Consensus 72 hlvnssRk~~t~vAfS~~Gryvat-------GEcG~~pa~kVw~la~h~vVAE---fvdHKY~vtcvaFsp~~kyvvSVG 141 (1080)
T KOG1408|consen 72 HLVNSSRKPLTCVAFSQNGRYVAT-------GECGRTPASKVWSLAFHGVVAE---FVDHKYNVTCVAFSPGNKYVVSVG 141 (1080)
T ss_pred heecccCcceeEEEEcCCCcEEEe-------cccCCCccceeeeeccccchhh---hhhccccceeeeecCCCcEEEeec
Confidence 345677789999999999999998 5666668999999998876655 678999999999999999999876
Q ss_pred C--CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-------------E
Q 001403 408 S--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-------------S 472 (1084)
Q Consensus 408 ~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-------------~ 472 (1084)
. |-.|.+||+.-..... -..-...|..++|+.||. +++|.+ ...|++|.++.++... .
T Consensus 142 sQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~ 214 (1080)
T KOG1408|consen 142 SQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGN 214 (1080)
T ss_pred cccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchhhhccc
Confidence 5 4467889887543222 123456799999999999 788887 6789999987665210 0
Q ss_pred e------------------------ccC-----------------CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 473 F------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 473 ~------------------------~~h-----------------~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
+ .|| ...-.|++. +..+++.|+.+|+|++++..+.
T Consensus 215 lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g~vrlFnp~tL 290 (1080)
T KOG1408|consen 215 LRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKGMVRLFNPETL 290 (1080)
T ss_pred cccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccceeeecCcchh
Confidence 0 000 011223443 2368999999999999987654
Q ss_pred CceEeecC------------------------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 512 GARVDYDA------------------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 512 ~~~~~~~~------------------------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
....++.. .-....++.|++....|.+... +..+++||++.-+.+......-
T Consensus 291 ~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~~kvgk~~s~l 366 (1080)
T KOG1408|consen 291 DYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDVNKVGKCSSML 366 (1080)
T ss_pred hhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEeccccccccceeeee
Confidence 32221110 0113457889999999988876 6679999998755443322221
Q ss_pred cccCceEEEEEcCC-----------CCEEEEEECCCcEEEEECCCCeEEEEE-------------c--------------
Q 001403 568 LQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI-------------D-------------- 609 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~-------------~-------------- 609 (1084)
.|...|+.+.--|- ...+++++.|++|++||+..+..-..+ .
T Consensus 367 yHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 367 YHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred eccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 22255666544331 235889999999999998762111100 0
Q ss_pred --------CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 610 --------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 610 --------~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
.-+....+.+++.+|+|++||+|..-|.++||++.+.+....+..|...|.|+.++..
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p-------------- 512 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFP-------------- 512 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCc--------------
Confidence 0011234789999999999999999999999999999999999999999999999832
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC--CeEEEeecCCceEEeeccCCc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGVHLMWRWPRND 759 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g--~~l~~~~~dg~i~vw~~~~~~ 759 (1084)
.-..+++++++.|.-|.++|.. +.+.+.....+|...|+++.|...| ..+++++.|..|.+-..++.
T Consensus 513 -----~~~~kLLASasrdRlIHV~Dv~-----rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~- 581 (1080)
T KOG1408|consen 513 -----VLTNKLLASASRDRLIHVYDVK-----RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKA- 581 (1080)
T ss_pred -----hhhhHhhhhccCCceEEEEecc-----cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccc-
Confidence 1235789999999999999975 2233333345699999999999888 77899999977654221110
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcC---CC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP---PS 835 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~---~~ 835 (1084)
...+++--.+.. .....+..+++.|..++++++. |..|+||++++|+..+.|++ |.
T Consensus 582 ----------~~g~~f~r~t~t----------~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~e 641 (1080)
T KOG1408|consen 582 ----------SSGRLFPRHTQT----------LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHE 641 (1080)
T ss_pred ----------cCceeccccccc----------cccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCC
Confidence 011111111000 1356788999999999999998 89999999999999999986 44
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+....+...| .|.|||+...|+++.++|..+|+++.++.||+..|+.+.|++|-+.|++.+.||.|.||.+..
T Consensus 642 G~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 642 GDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred CceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEECch
Confidence 6788899999 899999999999999999999999999999999999999999999999999999999999875
No 15
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.6e-41 Score=340.02 Aligned_cols=283 Identities=20% Similarity=0.288 Sum_probs=265.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEEEEEeCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLLGVAYSK 409 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~las~~~d 409 (1084)
|.+.+|..+.||+|+..||+|+|+ |.++||...++... ..+.||+..|.++.|+|. +..||+|+.|
T Consensus 173 gd~rPis~~~fS~ds~~laT~sws---------G~~kvW~~~~~~~~---~~l~gH~~~v~~~~fhP~~~~~~lat~s~D 240 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWS---------GLVKVWSVPQCNLL---QTLRGHTSRVGAAVFHPVDSDLNLATASAD 240 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecC---------CceeEeecCCccee---EEEeccccceeeEEEccCCCccceeeeccC
Confidence 667799999999999999999999 99999999998443 338999999999999996 7799999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
|+|++|++++...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++||++++..+.-.+||...|.+++|++
T Consensus 241 gtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~-- 313 (459)
T KOG0272|consen 241 GTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQP-- 313 (459)
T ss_pred CceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhcccccccceeEecC--
Confidence 999999999986665 7889999999999999999 899999999999999999999999999999999999955
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
||.+++||+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+. |++++|||++..+.+..+..|.
T Consensus 314 DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~ly~ipAH~-- 387 (459)
T KOG0272|consen 314 DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSELYTIPAHS-- 387 (459)
T ss_pred CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccceeccccc--
Confidence 7789999999999999999999999999999999999999999999999986 7789999999999999999999
Q ss_pred cCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 570 HNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 570 ~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+-|+.+.|+| .|.+|++++.|++++||...+..+++.+.+|.. .|.++.+++|+..+++++.|+++++|.
T Consensus 388 -nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 388 -NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred -chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeecc
Confidence 8999999998 688999999999999999999999999998866 599999999999999999999999995
No 16
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-37 Score=332.73 Aligned_cols=575 Identities=15% Similarity=0.161 Sum_probs=428.2
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG 477 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~ 477 (1084)
.+..+++.+-+.+..+||.+.-..+ ..-..+...|+|++-..+ ++++++ .+.|.+|- .| ...+.+..|.
T Consensus 45 ~~~~~vtt~vgksfqvYd~~kl~ll---~vs~~lp~~I~alas~~~----~vy~A~-g~~i~~~~--rgk~i~~~~~~~~ 114 (910)
T KOG1539|consen 45 GSTFYVTTCVGKSFQVYDVNKLNLL---FVSKPLPDKITALASDKD----YVYVAS-GNKIYAYA--RGKHIRHTTLLHG 114 (910)
T ss_pred CceEEEEEecCceEEEEeccceEEE---EecCCCCCceEEEEecCc----eEEEec-CcEEEEEE--ccceEEEEecccc
Confidence 4567888899999999998875433 244568888999886544 344444 44577775 45 4556778888
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-----EeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEE
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----VDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~ 550 (1084)
..|.-+.. =|..++++..++.+.+|+....+.. ...+.....|+++. +|. =+.++.|+. .|.+.
T Consensus 115 a~v~~l~~----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~----~G~lq 185 (910)
T KOG1539|consen 115 AKVHLLLP----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSS----QGRLQ 185 (910)
T ss_pred ceEEEEee----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeec----CCcEE
Confidence 88887765 3458999999999999998874211 11222233366554 343 244666664 66799
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE-E
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-L 629 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l 629 (1084)
+|++++++.+.+++++. ..|+++.=+|-=..++.|..+|+|.+++++.++.+..++.. ...|.+++|.-||+. +
T Consensus 186 l~Nvrt~K~v~~f~~~~---s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d--~g~VtslSFrtDG~p~l 260 (910)
T KOG1539|consen 186 LWNVRTGKVVYTFQEFF---SRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQD--WGRVTSLSFRTDGNPLL 260 (910)
T ss_pred EEEeccCcEEEEecccc---cceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEcc--ccceeEEEeccCCCeeE
Confidence 99999999999999988 89999999999899999999999999999999999999875 235999999999875 5
Q ss_pred EEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 630 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
++++..|.+.+||++..+.+...+ .|.+.+....+. +....+++++.|+.+++|-.+
T Consensus 261 as~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl----------------------~~epVl~ta~~DnSlk~~vfD 318 (910)
T KOG1539|consen 261 ASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFL----------------------PGEPVLVTAGADNSLKVWVFD 318 (910)
T ss_pred EeccCCceEEEEEcCCCeeeeeeeccccCCcccceec----------------------CCCceEeeccCCCceeEEEee
Confidence 556667999999999988877766 666777766665 456678888999999999887
Q ss_pred eecCccceeeccCCccccceEEEEEEe-cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
.++.... +.....+|..+..++.|. .+|..++.++.|++.+.+++........-.. ..+...+...-...
T Consensus 319 ~~dg~pR--~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~ 389 (910)
T KOG1539|consen 319 SGDGVPR--LLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFS 389 (910)
T ss_pred CCCCcch--heeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccc
Confidence 5544321 122234699999999998 7889999999999998887754432111100 11111111010000
Q ss_pred CcCCCCCCCccEEEecCCC----CEEEEEe--CCeEEEEEcCCcee-EEEEc-----CCCCCeEEEEEcCCCCcEEEEEe
Q 001403 788 TTDSNSQEAVPCFALSKND----AYLFSAS--GGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg----~~l~~~s--dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
+..-.-.+|..+++.-.. .-++++. +..++.|++..... ...+. .....+++++.++ .|++.+.|+
T Consensus 390 -~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~ 467 (910)
T KOG1539|consen 390 -TEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGY 467 (910)
T ss_pred -hhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEec
Confidence 000023355556554321 1233333 57799999976544 23333 2336789999999 999999999
Q ss_pred CCCeEEEEEcCCceeeeee---cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCce
Q 001403 856 DDSTILIYNARSSEVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l---~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
..|.|.+|++.+|-....+ ..|.++|++++...-++.+++++.+|.+++||........ ... ....+.
T Consensus 468 S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~-----~l~----l~~~~~ 538 (910)
T KOG1539|consen 468 SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKK-----SLR----LGSSIT 538 (910)
T ss_pred cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceee-----eec----cCCCcc
Confidence 9999999999999888888 5899999999998888999999999999999999854222 211 112578
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccc
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1011 (1084)
.+..+.....+|++ .|-.|+++|+.+.+.++. +.+|...|++++|||||++|++++.|++||+||+.++.++..+...
T Consensus 539 ~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd 617 (910)
T KOG1539|consen 539 GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD 617 (910)
T ss_pred eeeeeehhhhhhhhcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC
Confidence 88888888888885 677899999999998887 6689999999999999999999999999999999999999777611
Q ss_pred cccCCCCcccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcC
Q 001403 1012 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEP 1052 (1084)
Q Consensus 1012 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~ 1052 (1084)
..+.+++|+| +|.+||++..| .-|++|.=
T Consensus 618 -----------~~~~sls~SP-ngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 618 -----------SPCTSLSFSP-NGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred -----------CcceeeEECC-CCCEEEEEEecCceEEEEEc
Confidence 2246789999 59999999999 67999973
No 17
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=6.2e-41 Score=335.79 Aligned_cols=285 Identities=17% Similarity=0.258 Sum_probs=266.9
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
|.+.+|..+.||+|++.||+|+-+|.++||+..+...+. ++.+|.+.|.++.|+|....+-++||+.||++++|++.
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 356799999999999999999999999999999985554 89999999999999998422379999999999999999
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
+..++..+.+|...|..++|+| +|++|+|++.|.+-++||+.+.......++|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 9999999999999999999976 6689999999999999999999999999999999999999999999999987
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK- 624 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~- 624 (1084)
|..-+|||+++|+++..+.+|. .+|.+++|+|+|..+++|+.|++++|||++....+.++..|.. .|..|.|+|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~ 398 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ 398 (459)
T ss_pred cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence 6678999999999999999998 9999999999999999999999999999999999999987766 589999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 625 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.|.+|++++.|++++||...+..++..+.+|.+.|.++.++ +++..+++++.|.++++
T Consensus 399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL 456 (459)
T KOG0272|consen 399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL 456 (459)
T ss_pred CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence 78999999999999999999999999999999999999997 78889999999999999
Q ss_pred cc
Q 001403 705 EK 706 (1084)
Q Consensus 705 w~ 706 (1084)
|.
T Consensus 457 W~ 458 (459)
T KOG0272|consen 457 WR 458 (459)
T ss_pred cc
Confidence 96
No 18
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-39 Score=325.81 Aligned_cols=335 Identities=20% Similarity=0.305 Sum_probs=286.9
Q ss_pred CccceeeecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCc----c--ccceeee-ecC----CCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGAC----S--MLFKTAL-VRD----PGV 389 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~----~--~~~~~~~-~~~----h~~ 389 (1084)
+|+...+.+. |+.+|.+++|+|-.. .||+++.| -+.++|++... . ..++..+ +.+ ...
T Consensus 167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~---------s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGD---------STARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeecc-CCCceEEEecCchhhhhhhccCCc---------cceeeeeehhhccccchhhhhhhhhhhhcccCCccC
Confidence 5566666777 999999999999887 99998777 88899998641 1 1111110 111 246
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.|++++|+.+|..||+|+.||.++||+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+||..+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 89999999999999999999999999988753 22 6889999999999999999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
.+.+.-|..+-..+.|-. + ..+++.+.||.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~--~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQS--N-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEec--C-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 999999998866777742 2 47999999999999999999999999999999999999999999999986 7789
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC---------CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
.||+.........+..|. ..|..+.|+|.| ..+++++.|++|++||+..+.++..+..|.. +|+++
T Consensus 384 kiWs~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~--pVysv 458 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE--PVYSV 458 (524)
T ss_pred EeeecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC--ceEEE
Confidence 999999999999999988 899999999974 4789999999999999999999999976644 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|+|+++|+|+.||.|.+|+.++++.++...
T Consensus 459 afS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~----------------------------------------------- 491 (524)
T KOG0273|consen 459 AFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ----------------------------------------------- 491 (524)
T ss_pred EecCCCcEEEecCCCCeeEeccccchheeEeec-----------------------------------------------
Confidence 999999999999999999999999987776554
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 2245677888888888888888888887664
No 19
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=2.5e-37 Score=328.16 Aligned_cols=624 Identities=15% Similarity=0.163 Sum_probs=417.0
Q ss_pred eeeecccCCCCceEEEEcCCCc---eeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQH---TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~---~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+|.||...|+|+.|-|+.+ ++++|..| +.|++|.+... .......+.+|.. .+++++.....
T Consensus 46 i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD---------~~v~lW~l~~~-~~~~i~~~~g~~~--~~~cv~a~~~~ 113 (764)
T KOG1063|consen 46 IVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSD---------GRVILWKLRDE-YLIKIYTIQGHCK--ECVCVVARSSV 113 (764)
T ss_pred eEEeccCCccceEEEEEcccccccceEEEccCC---------CcEEEEEEeeh-heEEEEeecCcce--eEEEEEeeeeE
Confidence 4567899999999999999998 88999888 99999999822 2222233556554 45555544334
Q ss_pred EEEEeCCCEEEEEEccCCcccc-ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC--ceeeEeccCCCc
Q 001403 403 LGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYSFEGHGAP 479 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g--~~~~~~~~h~~~ 479 (1084)
..+...|+++.+||.+..+... ....+.....--.|+++.++.+..+++.|+.+..|.++.-.++ +.+..+.||.+.
T Consensus 114 ~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DW 193 (764)
T KOG1063|consen 114 MTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDW 193 (764)
T ss_pred EEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchh
Confidence 4444789999999996554110 0111222222345777788666557778888888888875544 456788999999
Q ss_pred EEEEeecccCC-CcEEEEEecCCeEEEEECCCCC-----------------c----e----------EeecCCCCeEEEE
Q 001403 480 VYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLG-----------------A----R----------VDYDAPGLGCTRM 527 (1084)
Q Consensus 480 v~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~-----------------~----~----------~~~~~~~~~i~~~ 527 (1084)
|.+++|..... .-+|+++|.|..||+|.+.... . . ..+.+|...|.++
T Consensus 194 Irsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv 273 (764)
T KOG1063|consen 194 IRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSV 273 (764)
T ss_pred hhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEE
Confidence 99999975544 5688999999999999764322 0 0 0124788899999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCc--eEeeeeec--cccccCceEEEEEcCCCCEEEEEECCCcEEEEEC-CCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~-~~~ 602 (1084)
.|+|.+..|++++. |.++.+|...+. --+....- ............|+|+++.+++-+.-|..++|.. +..
T Consensus 274 ~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~ 349 (764)
T KOG1063|consen 274 WWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKT 349 (764)
T ss_pred EEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCcc
Confidence 99999988988887 666999987654 22222221 1111245888999999999999999999999983 334
Q ss_pred eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
......-..++...|..++|+|.|++|++.+.|.+-|++-.-.. ...
T Consensus 350 ~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~-q~~-------------------------------- 396 (764)
T KOG1063|consen 350 FWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGR-QQE-------------------------------- 396 (764)
T ss_pred ceeeccccccccccceeeeecCCCCEEEEeccccceeeeccccc-ccc--------------------------------
Confidence 44444445566778999999999999999999999998864411 100
Q ss_pred cCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 683 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 683 ~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
|. .+.. +..|...+.++++-+....+++++....+++|+.+..-.
T Consensus 397 ----------------------wH----------EiaR-PQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv-- 441 (764)
T KOG1063|consen 397 ----------------------WH----------EIAR-PQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV-- 441 (764)
T ss_pred ----------------------ee----------eecc-cccccccceeeehccCCceeeecccceeeeeecCcHHHH--
Confidence 10 0000 123777788888888666688888888889988764311
Q ss_pred CcccceecCCeeecCCCCCccccc-cCcCCCCCCCccEEEecCCCCEE-EEEeCCe-------------EEEEEcC----
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVN-DTTDSNSQEAVPCFALSKNDAYL-FSASGGV-------------ISLYIVM---- 823 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~l~~s~dg~~l-~~~sdg~-------------i~vwd~~---- 823 (1084)
+......+.+.... .+ .....|..+-.|...-+. .+-+.+. ..+....
T Consensus 442 ----------~~l~~i~g~~~~~~~~~---p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~Edq 508 (764)
T KOG1063|consen 442 ----------KSLMAICGKCFKGSDEL---PDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQ 508 (764)
T ss_pred ----------HHHHHHhCccccCchhc---ccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHH
Confidence 00000011000000 00 012233333333222111 0000010 0010000
Q ss_pred -----CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEE
Q 001403 824 -----TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 824 -----~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
....+..+.+|...|.+++.+| +++++|+++... .|++|+..+...+..+.+|+-.|+.++|||||++|
T Consensus 509 Lq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~L 587 (764)
T KOG1063|consen 509 LQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYL 587 (764)
T ss_pred HHHhccchhhHHhccCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEE
Confidence 1123456778999999999999 999999998654 79999999998889999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc--ceeeE-eecCC
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL--TCLKQ-WFPIS 969 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~--~~~~~-~~~~h 969 (1084)
+++|.|+++.+|.......... .+.....|.. -|.++.|+||++++|+ +.|.+|++|..... +.+.. -...+
T Consensus 588 LsvsRDRt~sl~~~~~~~~~e~-~fa~~k~HtR---IIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~ 663 (764)
T KOG1063|consen 588 LSVSRDRTVSLYEVQEDIKDEF-RFACLKAHTR---IIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKF 663 (764)
T ss_pred EEeecCceEEeeeeecccchhh-hhccccccce---EEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhcc
Confidence 9999999999999865432221 1233444543 6899999999999999 58999999999877 55544 33456
Q ss_pred CCCEEEEEEcc-C----CCEEEEEeCCCcEEEEEcCCCceeEE---ec-cccccCCCCcccceeeeEEEECCC-------
Q 001403 970 SVPISQATFSC-D----CRMVFTSFVDGTLSIHEASNLEVQCR---IL-STAYLRPTTSCLHVYPHAIAAHPL------- 1033 (1084)
Q Consensus 970 ~~~v~~l~fs~-d----g~~l~t~~~dg~i~vwd~~~~~~~~~---~~-~~~~~~~~~~~~~v~~~~~~~~p~------- 1033 (1084)
..+|+++++.| + +..+++|-+.|.|.+|....-..... +. ....-+...+.+.|. .+.|.|-
T Consensus 664 ~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~--rl~w~p~~~~~~~~ 741 (764)
T KOG1063|consen 664 SLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVN--RLLWRPTCSDDWVE 741 (764)
T ss_pred CCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhh--eeEecccccccccc
Confidence 89999999987 2 23788899999999999662111100 00 001111112344455 3456652
Q ss_pred --CCCEEEEEeCCCcEEEEcCC
Q 001403 1034 --KPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1034 --d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
....|++|++|..++++++.
T Consensus 742 ~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 742 DKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccceeEEeeecccceeEEeecc
Confidence 12357999999999999874
No 20
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-37 Score=324.42 Aligned_cols=478 Identities=17% Similarity=0.274 Sum_probs=360.3
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+++..|++.|.++.|+|...+++++.++ |.|.||+.++....... .-...+|.+..|-+.-+++++|+
T Consensus 7 rk~~~rSdRVKsVd~HPtePw~la~Lyn---------G~V~IWnyetqtmVksf---eV~~~PvRa~kfiaRknWiv~Gs 74 (794)
T KOG0276|consen 7 RKFQSRSDRVKSVDFHPTEPWILAALYN---------GDVQIWNYETQTMVKSF---EVSEVPVRAAKFIARKNWIVTGS 74 (794)
T ss_pred hHhhccCCceeeeecCCCCceEEEeeec---------CeeEEEecccceeeeee---eecccchhhheeeeccceEEEec
Confidence 4566799999999999999999999888 99999999987666443 33567999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeec
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~ 486 (1084)
+|..|+||+.++++.+. .+.+|.+-|.+++.+|... +++|+|.|-+|++||.+.+ .+.++++||..-|.+++|.
T Consensus 75 DD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fn 149 (794)
T KOG0276|consen 75 DDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFN 149 (794)
T ss_pred CCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEec
Confidence 99999999999997666 8899999999999999988 8999999999999999865 7789999999999999999
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
|. |.+.+++++.|++|++|.+.+..+.+++.+|...|.++.+-+-| .+|++++. +..+.+||.++..+++++.
T Consensus 150 Pk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~TLe 224 (794)
T KOG0276|consen 150 PK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQTLE 224 (794)
T ss_pred CC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHHHhh
Confidence 86 55799999999999999999999999999999999999998755 68888874 7789999999999999999
Q ss_pred ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
||. ..|..+.|+|.-..+++|++||+++||+..+-++..++.... ..+.+++-.+.++.+++|.+.|.+.+ .+.
T Consensus 225 GHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~lg 298 (794)
T KOG0276|consen 225 GHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KLG 298 (794)
T ss_pred ccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ecc
Confidence 999 899999999999999999999999999999998888887553 46899999998888999988887654 222
Q ss_pred CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 645 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
...+...+ . +.|+. +|...
T Consensus 299 reeP~vsM------------d----------------------~~gKI-----------iwa~~---------------- 317 (794)
T KOG0276|consen 299 REEPAVSM------------D----------------------SNGKI-----------IWAVH---------------- 317 (794)
T ss_pred CCCCceee------------c----------------------CCccE-----------EEEcC----------------
Confidence 22111111 0 11111 11110
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcc--ccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF--MVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~v~~l~~ 802 (1084)
+.|..+-.- +.+.++ ++..|+.+ ...++. .-.-....++.
T Consensus 318 --~ei~~~~~k-------s~~~~~---------------------------ev~DgErL~LsvKeLg--s~eiyPq~L~h 359 (794)
T KOG0276|consen 318 --SEIQAVNLK-------SVGAQK---------------------------EVTDGERLPLSVKELG--SVEIYPQTLAH 359 (794)
T ss_pred --ceeeeeece-------eccCcc---------------------------cccCCccccchhhhcc--ccccchHHhcc
Confidence 111111100 000000 11112211 001110 01223346788
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE
Q 001403 803 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882 (1084)
Q Consensus 803 s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 882 (1084)
||+|+++++++||.-.||..-..+. ...+......|++ |....|+-..++.|+++ ++.+..+.+...-.
T Consensus 360 sPNGrfV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~--- 428 (794)
T KOG0276|consen 360 SPNGRFVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS--- 428 (794)
T ss_pred CCCCcEEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc---
Confidence 9999999999999988887432211 1345667889999 77778888889999998 66666655542111
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
+..--.|.+|...+ ++.+++||.++++... ..+- ....+.|+.+|.+++++.|...+++..
T Consensus 429 -~e~i~gg~Llg~~s-s~~~~fydW~~~~lVr-----rI~v------~~k~v~w~d~g~lVai~~d~Sfyil~~ 489 (794)
T KOG0276|consen 429 -AEGIFGGPLLGVRS-SDFLCFYDWESGELVR-----RIEV------TSKHVYWSDNGELVAIAGDDSFYILKF 489 (794)
T ss_pred -eeeecCCceEEEEe-CCeEEEEEcccceEEE-----EEee------ccceeEEecCCCEEEEEecCceeEEEe
Confidence 11122355666555 4559999999966433 3322 234799999999999988888666654
No 21
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6e-38 Score=299.46 Aligned_cols=294 Identities=17% Similarity=0.245 Sum_probs=266.8
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..++|+||.+.|.++.|++|+++|++++-| |.+.|||.-+..+... +.-....|..++|+|.|+++|+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqD---------GklIvWDs~TtnK~ha---ipl~s~WVMtCA~sPSg~~VAc 114 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQD---------GKLIVWDSFTTNKVHA---IPLPSSWVMTCAYSPSGNFVAC 114 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccC---------CeEEEEEcccccceeE---EecCceeEEEEEECCCCCeEEe
Confidence 448999999999999999999999999988 9999999977655543 3336789999999999999999
Q ss_pred EeCCCEEEEEEccCC--c-cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 406 AYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~--~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|+-|+...||++.+. + ..+...++.+|.+.+.|+.|.+|+. |+|++.|.+..+||+++|+.+..|.+|.+.|.+
T Consensus 115 GGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~s 191 (343)
T KOG0286|consen 115 GGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVFHGHTGDVMS 191 (343)
T ss_pred cCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEecCCcccEEE
Confidence 999999999999865 2 2234447889999999999999876 899999999999999999999999999999999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
+.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|.+++|.|+|.-+++|+. +++.++||++..+.+..
T Consensus 192 lsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyDlRaD~~~a~ 266 (343)
T KOG0286|consen 192 LSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYDLRADQELAV 266 (343)
T ss_pred EecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEeecCCcEEee
Confidence 999775 7789999999999999999999999999999999999999999999999985 77899999999999988
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
|.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.. .|.++..+|||.-+++|+.|..++||.
T Consensus 267 ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 267 YSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred eccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecchhHheeecC
Confidence 87443 457899999999999999999999999999999999999997765 699999999999999999999999994
No 22
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=100.00 E-value=1.7e-35 Score=320.71 Aligned_cols=561 Identities=15% Similarity=0.184 Sum_probs=429.0
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
+++.+||.+.-...+.. ..+...|+|++=..+ +..+++.. .|.+|.. |+.++. .+..|.+.|.-+.- -
T Consensus 56 ksfqvYd~~kl~ll~vs---~~lp~~I~alas~~~--~vy~A~g~-~i~~~~r--gk~i~~--~~~~~~a~v~~l~~--f 123 (910)
T KOG1539|consen 56 KSFQVYDVNKLNLLFVS---KPLPDKITALASDKD--YVYVASGN-KIYAYAR--GKHIRH--TTLLHGAKVHLLLP--F 123 (910)
T ss_pred ceEEEEeccceEEEEec---CCCCCceEEEEecCc--eEEEecCc-EEEEEEc--cceEEE--EeccccceEEEEee--e
Confidence 89999999876655432 347789999886654 44444333 3666653 332222 45577777776553 4
Q ss_pred CCcEEEEEEeCCCcEEEEECCCC-cee----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 445 CKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g-~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
|. .++++..++.+.||+..++ ..+ .-++...+.|+++. +|+---+.++.|+.+|.+.+|++++++..+++..
T Consensus 124 Ge--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~ 200 (910)
T KOG1539|consen 124 GE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQE 200 (910)
T ss_pred cc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecc
Confidence 66 6888899999999998774 221 11222333377764 4444446789999999999999999999999999
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEE
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWD 598 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd 598 (1084)
....|+++.-+|-=..++.|.. +|.|.+++++.++.+..|+... +.|+.++|..||+.+++ |+..|.+-+||
T Consensus 201 ~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wD 273 (910)
T KOG1539|consen 201 FFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWD 273 (910)
T ss_pred cccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEccc---cceeEEEeccCCCeeEEeccCCceEEEEE
Confidence 9999999999999999999876 7779999999999999999776 89999999999876655 66779999999
Q ss_pred CCCCeEEEEEc-CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC----CeeeeccccccceeEEEEcCCCceeee
Q 001403 599 MNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 599 ~~~~~~~~~~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~ 673 (1084)
++..+.+..+. .| ...+....|.|....+++++.|+.+++|-..++ +.++...+|..+-.++.|-
T Consensus 274 Le~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy-------- 343 (910)
T KOG1539|consen 274 LEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFY-------- 343 (910)
T ss_pred cCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeee--------
Confidence 99988887765 33 335888999999999999999999988866543 5667777898888888776
Q ss_pred eccCceeEecCCCCCCCCccceecccCccccccceeecCccceee------------ccCCccccceEEEEEEecC----
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL------------LLPSKVKANKISRLTYNNG---- 737 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~------------~~~~~~~~~~i~~l~~s~~---- 737 (1084)
...|..+.+++.|++.+.+++......+.... .....-.-.+|..+++...
T Consensus 344 -------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~ 410 (910)
T KOG1539|consen 344 -------------GSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKE 410 (910)
T ss_pred -------------ccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhh
Confidence 35688899999999988887543211111100 0011112345666666543
Q ss_pred -CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC
Q 001403 738 -GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 815 (1084)
Q Consensus 738 -g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg 815 (1084)
.+.+.+.-.+...+.|++..... |. .+.++. .+ ......+++++.++.|.+.+.|. .|
T Consensus 411 W~Nv~~~h~~~~~~~tW~~~n~~~---G~-------~~L~~~--------~~--~~~~~~~~av~vs~CGNF~~IG~S~G 470 (910)
T KOG1539|consen 411 WDNVITAHKGKRSAYTWNFRNKTS---GR-------HVLDPK--------RF--KKDDINATAVCVSFCGNFVFIGYSKG 470 (910)
T ss_pred hcceeEEecCcceEEEEeccCccc---cc-------EEecCc--------cc--cccCcceEEEEEeccCceEEEeccCC
Confidence 23344444456777788765422 00 011111 01 01456789999999999999997 69
Q ss_pred eEEEEEcCCceeEEEE---cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCE
Q 001403 816 VISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI 892 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~ 892 (1084)
.|.+|++++|-....+ ..|.++|+.++... -++.+++++.+|.+++||..+..++..+. -...++++..+....+
T Consensus 471 ~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr~s~l 548 (910)
T KOG1539|consen 471 TIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHRVSDL 548 (910)
T ss_pred eEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeeehhhh
Confidence 9999999999999888 57999999999988 78899999999999999999888777776 3456888999988999
Q ss_pred EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCC
Q 001403 893 LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSV 971 (1084)
Q Consensus 893 l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~ 971 (1084)
+|.+..|-.|+++|+.+ .++++.+.||.. .|++++|||||++|++ +.|++|++||+.++.++..+.. ..
T Consensus 549 ~a~~~ddf~I~vvD~~t-----~kvvR~f~gh~n---ritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v--d~ 618 (910)
T KOG1539|consen 549 LAIALDDFSIRVVDVVT-----RKVVREFWGHGN---RITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV--DS 618 (910)
T ss_pred hhhhcCceeEEEEEchh-----hhhhHHhhcccc---ceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec--CC
Confidence 99999999999999998 557888888887 9999999999999999 5899999999999999887654 67
Q ss_pred CEEEEEEccCCCEEEEEeCC-CcEEEEEcCCC
Q 001403 972 PISQATFSCDCRMVFTSFVD-GTLSIHEASNL 1002 (1084)
Q Consensus 972 ~v~~l~fs~dg~~l~t~~~d-g~i~vwd~~~~ 1002 (1084)
+++++.|||+|.+|||+..| .-|++|--.+.
T Consensus 619 ~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 619 PCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred cceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99999999999999999998 66999975543
No 23
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.5e-38 Score=297.21 Aligned_cols=295 Identities=20% Similarity=0.298 Sum_probs=252.9
Q ss_pred eeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+|++|+++|+.++..+.+ ..+.+++.| +++.+|++......+ ....+.||+..|..++.++||++
T Consensus 7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrD---------k~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAIKIKNSDILVSASRD---------KTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred eeeeecCCCceEEEEEeecCCCceEEEcccc---------eEEEEEEeccCccccCceeeeeeccceEecceEEccCCce
Confidence 346789999999999999985 667778877 999999997654333 22348899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC--CCcE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPV 480 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h--~~~v 480 (1084)
.++++.|+++++||+.+|+..+ .|.+|...|.+++|++|.+ .+++|+.|++|++||.. |.+..++..+ .+.|
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~~~~WV 151 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDSHREWV 151 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCCCcCcE
Confidence 9999999999999999996655 6889999999999999999 69999999999999965 4455555443 7899
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++.|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||..+++|+. ++.+.+||++.++.+
T Consensus 152 scvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~l 227 (315)
T KOG0279|consen 152 SCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNL 227 (315)
T ss_pred EEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCcee
Confidence 9999999987899999999999999999999999999999999999999999999999876 667999999999998
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-------CCCcceEEEecCCCEEEEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+... ..|.+++|+|+.-.|+. ..+..|+|||+.++..+..+..... .+...+++|++||..|++|.
T Consensus 228 ysl~a~----~~v~sl~fspnrywL~~-at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~ 302 (315)
T KOG0279|consen 228 YSLEAF----DIVNSLCFSPNRYWLCA-ATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGY 302 (315)
T ss_pred EeccCC----CeEeeEEecCCceeEee-ccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeee
Confidence 877654 58999999998655544 4456699999999988877654322 23356789999999999999
Q ss_pred CCCeEEEEEcC
Q 001403 634 NENRIKILETP 644 (1084)
Q Consensus 634 ~dg~i~iwd~~ 644 (1084)
.|+.|++|.+.
T Consensus 303 td~~irv~qv~ 313 (315)
T KOG0279|consen 303 TDNVIRVWQVA 313 (315)
T ss_pred cCCcEEEEEee
Confidence 99999999864
No 24
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.1e-37 Score=291.78 Aligned_cols=288 Identities=15% Similarity=0.178 Sum_probs=266.0
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+|+||.+.|.++.|++|+++|++++.||.+.|||.-|..... .+.-....|..++|+|.|+ ++++|+.|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 4589999999999999999999999999999999998875443 4556678999999999999 8999999999999
Q ss_pred EECCCC------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCC
Q 001403 462 WDAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR 534 (1084)
Q Consensus 462 wd~~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~ 534 (1084)
|++.+. ...+.+.+|.+.+.++.|.. | ..|+|+|.|.+..+||+++++....+.+|.+.|.+++++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 999855 34577899999999999954 3 5899999999999999999999999999999999999999 999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
.+++++. +...++||++.+.+++.|.+|. ..|++++|.|+|.-+++|++|++.++||++..+.+..+......
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~ 273 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSII 273 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCccc
Confidence 9999987 6669999999999999999999 99999999999999999999999999999999999999877777
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
..|++++||..|++|.+|..|..+.+||.-.++.+..+.+|..+|.++..+ |||.-++
T Consensus 274 ~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~ 331 (343)
T KOG0286|consen 274 CGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVA 331 (343)
T ss_pred CCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEE
Confidence 789999999999999999999999999999999999999999999999997 6788899
Q ss_pred eecccCcccccc
Q 001403 695 SVEAENKSEVEK 706 (1084)
Q Consensus 695 ~~~~d~~i~~w~ 706 (1084)
+|+.|.++|||.
T Consensus 332 TgSWDs~lriW~ 343 (343)
T KOG0286|consen 332 TGSWDSTLRIWA 343 (343)
T ss_pred ecchhHheeecC
Confidence 999999999994
No 25
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-35 Score=315.34 Aligned_cols=584 Identities=16% Similarity=0.235 Sum_probs=405.3
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
++..+..|..++|+|...++.++... |.|++||..-+....+ +.+|.++|..++|+|++.++++|++|
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHs---------G~IQlWDYRM~tli~r---FdeHdGpVRgv~FH~~qplFVSGGDD 72 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHS---------GVIQLWDYRMGTLIDR---FDEHDGPVRGVDFHPTQPLFVSGGDD 72 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecC---------ceeeeehhhhhhHHhh---hhccCCccceeeecCCCCeEEecCCc
Confidence 34556789999999999999998766 9999999987766544 67899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
-.|+||+.++.+++. ++.||.+.|..+.|++.-. +++|+|.|.+|+||++.+++++..+.||...|.|..|+|.+
T Consensus 73 ykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE 147 (1202)
T KOG0292|consen 73 YKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE 147 (1202)
T ss_pred cEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc
Confidence 999999999987665 7889999999999999877 89999999999999999999999999999999999999876
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
| .++++|.|.+||+||+...+....-.. ++.=...+..+ + .-++--...-....+.||.
T Consensus 148 D--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~---------~--~dLfg~~DaVVK~VLEGHD-- 206 (1202)
T KOG0292|consen 148 D--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG---------N--SDLFGQTDAVVKHVLEGHD-- 206 (1202)
T ss_pred c--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc---------c--hhhcCCcCeeeeeeecccc--
Confidence 4 899999999999999975443322111 00000011110 0 1111111223456788888
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
..|+.++|+|.-..+++|++|+.|++|.+..-+.-..-...++...|.++-|+|...++++.+.|++|+|||+...+.+
T Consensus 207 -RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v 285 (1202)
T KOG0292|consen 207 -RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSV 285 (1202)
T ss_pred -cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccce
Confidence 8899999999999999999999999999976554444344456668999999999999999999999999999999999
Q ss_pred eeccccccceeEEEEcCCCceeeeeccCceeEecCCC-----CCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 650 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~-----s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
++++...++.+.++..|.....+.|-..|.+.|.-+- .-+++.+...- |..|+-+|+.+........+..+..
T Consensus 286 ~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~~lr~~g~- 363 (1202)
T KOG0292|consen 286 QTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVASLRRPGT- 363 (1202)
T ss_pred eeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeEeccCCCc-
Confidence 9999999999999999999999999999988884331 22344444433 7788888887755544444443321
Q ss_pred ccceEEEEEEecCCCeEEEeec--CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
...++.++.++|....++.++. +|...++.+++....... . . .........++-.
T Consensus 364 ~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~------------~---~--------~~~k~tG~~a~fv 420 (1202)
T KOG0292|consen 364 LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSD------------G---K--------DVKKGTGEGALFV 420 (1202)
T ss_pred ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCC------------c---h--------hhhcCCCCceEEE
Confidence 3456788999998777666643 466666665543210000 0 0 0001222233333
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE
Q 001403 803 SKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 882 (1084)
Q Consensus 803 s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~ 882 (1084)
..++-.+..-++..+.+-++.+ +..+.+... .....+-+.. .|.+|+. ....|.+||+...+.+..+. -..|.
T Consensus 421 arNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si~--~s~vk 493 (1202)
T KOG0292|consen 421 ARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSIK--VSKVK 493 (1202)
T ss_pred EecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEEe--cCcee
Confidence 3332222222234444444432 222222211 2333444544 5655543 34569999999888777766 46788
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc--
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-- 960 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-- 960 (1084)
-+.||+|..++|.-+. .+|.|.+.+-. .+....... +|.+-+|..+|-+|.+..+.-= |-+.+|.
T Consensus 494 yvvws~dm~~vAll~K-h~i~i~~kkL~------l~~sihEti----riksgawde~gVfiYtT~nHik--Yal~~GD~G 560 (1202)
T KOG0292|consen 494 YVVWSNDMSRVALLSK-HTITIADKKLE------LLCSIHETI----RIKSGAWDEDGVFIYTTLNHIK--YALENGDSG 560 (1202)
T ss_pred EEEEcCccchhhhccc-ceEEEEecchh------heecchhee----EeeeceeccCceEEEEehhhhh--hhhccCCcc
Confidence 9999999998887765 56888886641 222222222 4778889888888777533211 1122222
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
.++++ ..++.-.. -.|..+++-..|+.+++.+++.-+
T Consensus 561 IikTL----d~~iyitk--v~gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 561 IIKTL----DKPIYITK--VKGNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred eEEec----ccceEEEE--eeCCEEEEEecCCCeEEEeechHH
Confidence 12221 12333222 247778888888888888877643
No 26
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9e-35 Score=304.48 Aligned_cols=462 Identities=15% Similarity=0.208 Sum_probs=342.6
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
..++..|.+|.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|.+..|-+-.+ ++++|+.|..|+|++.
T Consensus 10 ~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 10 QSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFNY 84 (794)
T ss_pred hccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEec
Confidence 3488999999999999999999999999999999987776 6666778999999998877 8999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcC-CCCEEEEEeeC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTS 542 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~ 542 (1084)
.+++.++.|..|.+-|++++.+|.. .+++|+|.|-+|++||++.. .+..++++|.+-|..++|+| |.+.+++++-
T Consensus 85 nt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL- 161 (794)
T KOG0276|consen 85 NTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL- 161 (794)
T ss_pred ccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec-
Confidence 9999999999999999999998854 79999999999999999875 46778999999999999999 6678999887
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
+++|.+|.+.+..+..++.+|. ..|+++.+-+- ..++++|++|.+|+|||.++..+++++++|.+ .|..+
T Consensus 162 ---DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v 233 (794)
T KOG0276|consen 162 ---DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFV 233 (794)
T ss_pred ---cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEE
Confidence 6779999999999999999999 89999999764 47999999999999999999999999998766 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|.-..+++|+.||+++||+..+-+....+....++++|++..+.
T Consensus 234 ~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~--------------------------------- 280 (794)
T KOG0276|consen 234 FFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKG--------------------------------- 280 (794)
T ss_pred EecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeecCC---------------------------------
Confidence 99999999999999999999999887666666555555555555433
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
+..++.|..+|.+.+=
T Consensus 281 -------------------------------------~~~i~vG~Deg~i~v~--------------------------- 296 (794)
T KOG0276|consen 281 -------------------------------------DGKIAVGFDEGSVTVK--------------------------- 296 (794)
T ss_pred -------------------------------------CCeEEEeccCCcEEEE---------------------------
Confidence 3333333333333220
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEeC--CeEEEE------EcCCceeEE----EEcCCCCCeEEEEEcCCCC
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTIL----TIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd--g~i~vw------d~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 848 (1084)
-......+..++.|+.+-+... -.+.+- ++..|+.+. .+-...-....++-+| +|
T Consensus 297 ------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NG 363 (794)
T KOG0276|consen 297 ------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NG 363 (794)
T ss_pred ------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CC
Confidence 0001111222223322211110 000010 222222211 1111111234678899 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
+++++++ ||.-.||..-..+ ..+.+.-....|++|....|.--.++.|+++ +..+... .+..
T Consensus 364 rfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~-------- 425 (794)
T KOG0276|consen 364 RFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP-------- 425 (794)
T ss_pred cEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc--------
Confidence 8887665 8888888632211 1245566778999998888888788889998 4322111 1111
Q ss_pred CCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 929 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
-..+.+--.|.+|.+.+++.+++||.++++.++.+.. ....+.|+.+|.+++.++.| +.++.
T Consensus 426 --~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v----~~k~v~w~d~g~lVai~~d~-Sfyil 487 (794)
T KOG0276|consen 426 --DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIEV----TSKHVYWSDNGELVAIAGDD-SFYIL 487 (794)
T ss_pred --ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEee----ccceeEEecCCCEEEEEecC-ceeEE
Confidence 0113333456777778899999999999999887542 45678999999998888765 34444
No 27
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-36 Score=323.89 Aligned_cols=289 Identities=17% Similarity=0.306 Sum_probs=253.0
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...+|+-|..+...-...++|+.||+|+..||.|..| ..|++|.+...+..... +...
T Consensus 363 ~~~lpSic~YT~~nt~~~v~ca~fSddssmlA~Gf~d---------S~i~~~Sl~p~kl~~lk-----~~~~-------- 420 (707)
T KOG0263|consen 363 RNSLPSICMYTFHNTYQGVTCAEFSDDSSMLACGFVD---------SSVRVWSLTPKKLKKLK-----DASD-------- 420 (707)
T ss_pred CCCCCcEEEEEEEEcCCcceeEeecCCcchhhccccc---------cEEEEEecchhhhcccc-----chhh--------
Confidence 5778899999999888899999999999999999888 99999999864322111 1111
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
...+=+.+.|-.+.+-|-.++...+ ++.||.++|..+.|+|+.+ +|++++.|+++++|.+.+..++..++||..
T Consensus 421 -l~~~d~~sad~~~~~~D~~~~~~~~---~L~GH~GPVyg~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~ 494 (707)
T KOG0263|consen 421 -LSNIDTESADVDVDMLDDDSSGTSR---TLYGHSGPVYGCSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLA 494 (707)
T ss_pred -hccccccccchhhhhccccCCceeE---EeecCCCceeeeeeccccc--ceeeccCCcceeeeecccceeEEEecCCCc
Confidence 1122234444446666666554333 6889999999999999999 899999999999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 558 (1084)
||+.+.|+| .|.+++|+|.|++-++|..+...+...+.+|...+.|+.|+|+..++++|+. +.++++||+.+|.
T Consensus 495 PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~ 568 (707)
T KOG0263|consen 495 PVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGN 568 (707)
T ss_pred ceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCC----CceEEEEEcCCCc
Confidence 999999965 6799999999999999999999999999999999999999999999999986 7789999999999
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
.++.|.||. ++|.+++|+|+|++|++|++||.|.+||+.+++++..+..| ...|.++.|+.||..||+++.|++|
T Consensus 569 ~VRiF~GH~---~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV 643 (707)
T KOG0263|consen 569 SVRIFTGHK---GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSV 643 (707)
T ss_pred EEEEecCCC---CceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeE
Confidence 999999998 99999999999999999999999999999999999999988 4469999999999999999999999
Q ss_pred EEEEcCCC
Q 001403 639 KILETPES 646 (1084)
Q Consensus 639 ~iwd~~~~ 646 (1084)
++||+..-
T Consensus 644 ~lWD~~~~ 651 (707)
T KOG0263|consen 644 RLWDLTKV 651 (707)
T ss_pred EEEEchhh
Confidence 99998754
No 28
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-35 Score=281.07 Aligned_cols=295 Identities=16% Similarity=0.189 Sum_probs=245.9
Q ss_pred ccccceEEEEEEecCC-CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEE
Q 001403 723 KVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA 801 (1084)
Q Consensus 723 ~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~ 801 (1084)
.+|.+.|..++..+.+ ..++.++.|..+.+|++... |.+.|..... +. +|...|..++
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~ 70 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV 70 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence 4599999999998874 55677788999999998754 2233332222 33 4899999999
Q ss_pred ecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--cc
Q 001403 802 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG--HS 878 (1084)
Q Consensus 802 ~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~--h~ 878 (1084)
.++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|+.... +..++.. |.
T Consensus 71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~ 148 (315)
T KOG0279|consen 71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHR 148 (315)
T ss_pred EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeeccc-EEEEEecCCCc
Confidence 999999999998 89999999999999999999999999999999 8999999999999999998854 4444433 37
Q ss_pred cCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001403 879 KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 955 (1084)
Q Consensus 879 ~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd 955 (1084)
+.|.|+.|+|+ ..+|+++|.|++|++||+.+ ....+.+.+|.. .++.+++||||.+.++ |.||.+.+||
T Consensus 149 ~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~-----~~l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~Lwd 220 (315)
T KOG0279|consen 149 EWVSCVRFSPNESNPIIVSASWDKTVKVWNLRN-----CQLRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWD 220 (315)
T ss_pred CcEEEEEEcCCCCCcEEEEccCCceEEEEccCC-----cchhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEE
Confidence 89999999998 78999999999999999998 345556667665 8999999999999999 5899999999
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
+..++.+.. .+|...|.+++|+|+.-.|+.+ .+..|+|||++++..+..+....--+ ......+.+++++|++ ||
T Consensus 221 L~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s~~~~~~~clslaws~-dG 295 (315)
T KOG0279|consen 221 LNEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-SSKAGDPICLSLAWSA-DG 295 (315)
T ss_pred ccCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-ccccCCcEEEEEEEcC-CC
Confidence 999998665 3578999999999987666554 67779999999998887766333222 2234567889999998 69
Q ss_pred CEEEEEeCCCcEEEEcCC
Q 001403 1036 TQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~ 1053 (1084)
..|.+|..||.|++|.+.
T Consensus 296 ~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 296 QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cEEEeeecCCcEEEEEee
Confidence 999999999999999874
No 29
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=5.2e-34 Score=303.12 Aligned_cols=543 Identities=17% Similarity=0.195 Sum_probs=387.1
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC-CcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~-~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
.|.|.+ +++-|....|.+||..+......+.||..+|+|+.+-|..+ ..++++|+.||.|.+|.++.........
T Consensus 21 sw~~~~----~vafGa~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~ 96 (764)
T KOG1063|consen 21 SWGPGG----LVAFGAGPAIAVADPEKILIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYT 96 (764)
T ss_pred cccccc----eEEecCCceEEEeCcccceeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEe
Confidence 454544 34444578899999888878899999999999999976543 1279999999999999998544433333
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCC-CCEE-EEEECCCcE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTA-KDQI-LAAGDDHVI 594 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~-~~~l-~~~~~dg~i 594 (1084)
.......++++...-..+.+.. .++.+.+||.+..+ +...+.-.. ...-..++++.|+ +.++ ++|+.+..|
T Consensus 97 ~~g~~~~~~cv~a~~~~~~~~~----ad~~v~vw~~~~~e~~~~~~~rf~~-k~~ipLcL~~~~~~~~~lla~Ggs~~~v 171 (764)
T KOG1063|consen 97 IQGHCKECVCVVARSSVMTCKA----ADGTVSVWDKQQDEVFLLAVLRFEI-KEAIPLCLAALKNNKTFLLACGGSKFVV 171 (764)
T ss_pred ecCcceeEEEEEeeeeEEEeec----cCceEEEeecCCCceeeehheehhh-hhHhhHHHhhhccCCcEEEEecCcceEE
Confidence 3334445555544333333322 27789999985555 222222111 0012234555563 3333 447788888
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCC---CEEEEEECCCeEEEEEcCCCC------------------------
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG---TLLAVIANENRIKILETPESN------------------------ 647 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~---~~l~~~~~dg~i~iwd~~~~~------------------------ 647 (1084)
.++.-...+........++...|.+++|...+ -+|++++.|..||||.+.-+.
T Consensus 172 ~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~ 251 (764)
T KOG1063|consen 172 DLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILE 251 (764)
T ss_pred EEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeee
Confidence 88876666555555555566689999998744 488999999999999875332
Q ss_pred ee-------eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 648 SV-------DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 648 ~~-------~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.+ ..+.+|.+.|.++.|. |.+..+++++.|.++.+|.............++
T Consensus 252 ~i~~~is~eall~GHeDWV~sv~W~----------------------p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRl 309 (764)
T KOG1063|consen 252 EIQYRISFEALLMGHEDWVYSVWWH----------------------PEGLDLLSASADKSMIIWKPDENTGIWVDVVRL 309 (764)
T ss_pred eEEEEEehhhhhcCcccceEEEEEc----------------------cchhhheecccCcceEEEecCCccceEEEEEEe
Confidence 01 1223777777777776 566778999999999999977554444444444
Q ss_pred CCc-cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 721 PSK-VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 721 ~~~-~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
-.. +.........|+|++..+++-+..|..++|.... ...|..... ..+|...|..
T Consensus 310 Ge~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d--------------~~~w~~~~~---------iSGH~~~V~d 366 (764)
T KOG1063|consen 310 GEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKD--------------KTFWTQEPV---------ISGHVDGVKD 366 (764)
T ss_pred ecccccccceeeEEEcCCCCEEEEecccCcEEEEeccC--------------ccceeeccc---------ccccccccee
Confidence 432 2344578889999999999999999999997221 223433221 1269999999
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcC----CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-------
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVM----TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS------- 867 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~----~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~------- 867 (1084)
++|+|.|.+|.+.+ |-+-|+|-.- +.-.+..-+-|...++|++|-+ ....+++|.+...+|+|+...
T Consensus 367 v~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn-~~~~FVSgAdEKVlRvF~aPk~fv~~l~ 445 (764)
T KOG1063|consen 367 VDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVN-EDLQFVSGADEKVLRVFEAPKSFVKSLM 445 (764)
T ss_pred eeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehcc-CCceeeecccceeeeeecCcHHHHHHHH
Confidence 99999999999998 8888887654 2233444556888999999998 577888888899999998641
Q ss_pred ---cee------------------------------------------------------------------eeeecccc
Q 001403 868 ---SEV------------------------------------------------------------------ISKLEGHS 878 (1084)
Q Consensus 868 ---~~~------------------------------------------------------------------~~~l~~h~ 878 (1084)
+.+ ++++.||.
T Consensus 446 ~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHG 525 (764)
T KOG1063|consen 446 AICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHG 525 (764)
T ss_pred HHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCc
Confidence 000 45567899
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEE
Q 001403 879 KRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLA 952 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~ 952 (1084)
-.|.+++.+|+|+++||++... .|++|+..+.. ..+.+.+|.- .|+.++|||||++|++ +.|+++.
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~-----~~~~L~~HsL---TVT~l~FSpdg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWL-----QVQELEGHSL---TVTRLAFSPDGRYLLSVSRDRTVS 597 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchh-----hhheecccce---EEEEEEECCCCcEEEEeecCceEE
Confidence 9999999999999999998653 59999999844 4445667766 8999999999999998 7999999
Q ss_pred EEEcCCcceee---EeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--ceeEEeccccccCCCCcccceeeeE
Q 001403 953 IYEAEELTCLK---QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL--EVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 953 vwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
+|......... .....|+..|.+..|+||+.+++|+|.|.+|+||....+ +.+.++. .+. ++.+|.+
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a---~~~---~~~aVTA-- 669 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFA---CLK---FSLAVTA-- 669 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhc---hhc---cCCceee--
Confidence 99885443221 225679999999999999999999999999999999988 4444432 122 2455664
Q ss_pred EEECCCC----CCEEEEEeCCCcEEEEcCC
Q 001403 1028 IAAHPLK----PTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1028 ~~~~p~d----~~~l~~~~~dg~v~vw~~~ 1053 (1084)
+++.|-+ +..+++|-..|.|.+|...
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecc
Confidence 4444432 3478999999999999976
No 30
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=6.7e-35 Score=272.00 Aligned_cols=291 Identities=16% Similarity=0.279 Sum_probs=248.1
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccce
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 426 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~ 426 (1084)
-+||++++| .+|++|...++..... +......|..+...||+++||+++... |++||+.++..- +.
T Consensus 11 viLvsA~YD---------hTIRfWqa~tG~C~rT---iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~~S~np~-Pv 76 (311)
T KOG0315|consen 11 VILVSAGYD---------HTIRFWQALTGICSRT---IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDLNSNNPN-PV 76 (311)
T ss_pred eEEEeccCc---------ceeeeeehhcCeEEEE---EecCccceeeEEEcCCcchhhhccCCe-eEEEEccCCCCC-ce
Confidence 478999998 9999999998776554 333567899999999999999998765 999999998753 55
Q ss_pred eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 427 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 427 ~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
.++.+|...|+++.|..||+ +++|||+||+++|||++...+.+.++ |..+|+++..+|.. .-|+++..+|.|++|
T Consensus 77 ~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ--teLis~dqsg~irvW 151 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ--TELISGDQSGNIRVW 151 (311)
T ss_pred eEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc--ceEEeecCCCcEEEE
Confidence 68999999999999999999 89999999999999999976666665 77999999997754 689999999999999
Q ss_pred ECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce------EeeeeeccccccCceEEEEEc
Q 001403 507 LYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 507 d~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~------~~~~~~~~~~~~~~v~~~~~s 579 (1084)
|+........+. .....+.++...|||.+++.+.. .|..++|++-++. ++..++.|. +.+..+.+|
T Consensus 152 Dl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---~~il~C~lS 224 (311)
T KOG0315|consen 152 DLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---GHILRCLLS 224 (311)
T ss_pred EccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---ceEEEEEEC
Confidence 999876655443 34458999999999999999865 6779999987643 345566666 889999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
||+++|++++.|.+++||+.++. +....++++ ...+..++||.||++|++++.|+..++|++..++.+....+|...
T Consensus 225 Pd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 225 PDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKA 302 (311)
T ss_pred CCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCcccc
Confidence 99999999999999999999988 444455544 346899999999999999999999999999999999999999888
Q ss_pred eeEEEEc
Q 001403 659 LRKLSVN 665 (1084)
Q Consensus 659 i~~~~~~ 665 (1084)
..|++..
T Consensus 303 ~vc~~ln 309 (311)
T KOG0315|consen 303 AVCVALN 309 (311)
T ss_pred cEEEEee
Confidence 8777664
No 31
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=2.3e-34 Score=283.65 Aligned_cols=339 Identities=18% Similarity=0.236 Sum_probs=286.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.+..|++.|.+++.+|+.+ +++||+.|....+|++.+|..+..+.+|.+.|+++.| +.+|.+|+||+.+|.|++|.
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~F--shdgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSF--SHDGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEE--ccCceEEEecCCCccEEEEE
Confidence 6789999999999999777 8999999999999999999999999999999999999 45789999999999999999
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
..++.....+......+.-+.|+|.+..|++|+. ++.+.+|.+.++...+.+.||. .++++-.|.|+|+.+++
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t 207 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT 207 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence 9999999988877788999999999999999986 6679999999988889999988 89999999999999999
Q ss_pred EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 588 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 588 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
+..||+|++||..+++++..+....+. ...++.++..+..++.|..++.+.+-+..+++.+....+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~-~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~------------- 273 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGL-ELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG------------- 273 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccC-cCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence 999999999999999999998755543 467889999999999999998888877665533321110
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.+..+-....
T Consensus 274 ---------------------------------------------------------------------~~~~l~~~~e- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------------TVPELKPSQE- 283 (399)
T ss_pred ---------------------------------------------------------------------CCccccccch-
Confidence 0000000000
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCce
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK 826 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~ 826 (1084)
.....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus 284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~ 319 (399)
T KOG0296|consen 284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST 319 (399)
T ss_pred --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence 0122333444555556777887 8999999998877
Q ss_pred eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 827 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 827 ~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
....+. |...|+.+.|-+ ..+|++++.+|.|+.||.++|+++.++.||...|.+++++|+.++++|+|.|++.+|++
T Consensus 320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~ 396 (399)
T KOG0296|consen 320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE 396 (399)
T ss_pred hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence 665555 788899999987 46899999999999999999999999999999999999999999999999999999998
Q ss_pred CC
Q 001403 907 VD 908 (1084)
Q Consensus 907 ~~ 908 (1084)
+.
T Consensus 397 v~ 398 (399)
T KOG0296|consen 397 VP 398 (399)
T ss_pred cC
Confidence 75
No 32
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=3.2e-32 Score=278.57 Aligned_cols=534 Identities=12% Similarity=0.141 Sum_probs=381.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
.-+.|+. .=..+-+-|.|..+.... ..+.+++++...+. .+.||+..|.|++.+||--.+|+|-
T Consensus 60 ygYRG~d-cR~Nly~lptgE~vyfvA-----------~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri~vatGQ 123 (626)
T KOG2106|consen 60 YGYRGVD-CRNNLYLLPTGELVYFVA-----------AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRIRVATGQ 123 (626)
T ss_pred Eeeccee-eeceeEEccCccEEEEec-----------cEEEEEeehhhhcc----cccCCCCceEEEeecCCceeeccCc
Confidence 3344443 223455667776655521 45566777543322 2678999999999999999999875
Q ss_pred CCC--------EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE--EeCCCcEEEEECCCCceeeEeccCC
Q 001403 408 SKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT--CGDDKTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 408 ~dg--------~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s--~~~d~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
..| .|+|||..+-..+. .+......|.|++||+-....++.. -+.+..+.|||...+......+..+
T Consensus 124 ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sn 200 (626)
T KOG2106|consen 124 GAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSN 200 (626)
T ss_pred ccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceecc
Confidence 444 49999977754343 5656667899999998543213333 3556789999999999888888888
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe---ecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
..|....|+|... +++++ ...|.+.+|+++.+..... ++. ....|.+++|.++|..+-. |.++.|.||+
T Consensus 201 e~v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg-----DS~G~i~Iw~ 273 (626)
T KOG2106|consen 201 EVVFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG-----DSGGNILIWS 273 (626)
T ss_pred ceEEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee-----cCCceEEEEe
Confidence 8899999988643 44444 5568999999887665332 222 2357999999999987643 3477899999
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+.+..+....|. +.|.+++...+|. |++|+.|+.|..|| ..-+.++..+.......+..++=... -+++|+
T Consensus 274 ~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~e~~~--di~vGT 346 (626)
T KOG2106|consen 274 KGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVAEGKG--DILVGT 346 (626)
T ss_pred CCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEecCCC--cEEEee
Confidence 98887777666666 9999999999885 55599999999999 55566666666555555666553322 266666
Q ss_pred CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 634 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
..+.|..=.+.++-.+.
T Consensus 347 trN~iL~Gt~~~~f~~~--------------------------------------------------------------- 363 (626)
T KOG2106|consen 347 TRNFILQGTLENGFTLT--------------------------------------------------------------- 363 (626)
T ss_pred ccceEEEeeecCCceEE---------------------------------------------------------------
Confidence 65554433332221110
Q ss_pred cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCC
Q 001403 714 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 793 (1084)
Q Consensus 714 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1084)
..+|......++..|+...+++++.|+.+++|+ ..+ ..|... .
T Consensus 364 --------v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~--------------~ 406 (626)
T KOG2106|consen 364 --------VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI--------------I 406 (626)
T ss_pred --------EEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE--------------e
Confidence 012566777888999999999999999999998 111 123211 3
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-ee
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~-~~ 871 (1084)
..+..|+.|+|.| .+|.|. .|...+.|.++...+..-.. ..++++++|+| +|.+||+|+.|+.|+||.+..+. ..
T Consensus 407 ~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvgs~d~~iyiy~Vs~~g~~y 483 (626)
T KOG2106|consen 407 EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVGSHDNHIYIYRVSANGRKY 483 (626)
T ss_pred cCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEecCCCeEEEEEECCCCcEE
Confidence 5678899999999 888887 79999999999555554444 88999999999 99999999999999999987643 33
Q ss_pred eee-cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee---------ee---eecCCCCccCCCCceEEEEcc
Q 001403 872 SKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC---------RS---LQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 872 ~~l-~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~---------~~---~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
... +.|..+|+.+.||+|+++|.+.+.|-.|..|.-........ .+ +...- ......+..++-|.
T Consensus 484 ~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g--~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 484 SRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFG--GSDGTDINAVARSH 561 (626)
T ss_pred EEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEec--ccCCchHHHhhhhh
Confidence 222 22448999999999999999999999999994332211110 00 00000 11123577788888
Q ss_pred CCCEEEEE-eCCeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 939 DQTRFLLV-HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 939 dg~~la~~-~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.+++|++ ..|+|++|...--. ....-..+|++.|++++|+.+..+|++.+.|.+|..|++
T Consensus 562 ~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 562 CEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred hhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999998 55899999886332 233336689999999999999999999999999999986
No 33
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=266.33 Aligned_cols=295 Identities=17% Similarity=0.264 Sum_probs=252.7
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--Eeeeeeccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ 569 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~ 569 (1084)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+++++ ++.++.+|.
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~-- 83 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT-- 83 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence 5899999999999999999999999999999999999999999999987 5569999999865 588899998
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
..|.++.|..+|+++++|++||+++|||++...+.+.+... .+|+++..+|+...|+++..+|.|++||+.+..+.
T Consensus 84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~ 159 (311)
T KOG0315|consen 84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT 159 (311)
T ss_pred -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence 89999999999999999999999999999997666666543 46999999999999999999999999999876433
Q ss_pred eeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceE
Q 001403 650 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 729 (1084)
Q Consensus 650 ~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i 729 (1084)
..+. |. ....|
T Consensus 160 ~~li-------------------------------------------------------------------Pe--~~~~i 170 (311)
T KOG0315|consen 160 HELI-------------------------------------------------------------------PE--DDTSI 170 (311)
T ss_pred cccC-------------------------------------------------------------------CC--CCcce
Confidence 3221 11 22468
Q ss_pred EEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEE
Q 001403 730 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL 809 (1084)
Q Consensus 730 ~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l 809 (1084)
.+++..|||..++++...|...+|++........ +.+ +. +...|...+..+.+|||+++|
T Consensus 171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~-----------l~P-----~~----k~~ah~~~il~C~lSPd~k~l 230 (311)
T KOG0315|consen 171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASE-----------LEP-----VH----KFQAHNGHILRCLLSPDVKYL 230 (311)
T ss_pred eeEEEcCCCcEEEEecCCccEEEEEccCCCcccc-----------ceE-----hh----heecccceEEEEEECCCCcEE
Confidence 8999999999999999999999999865321000 000 01 112489999999999999999
Q ss_pred EEEe-CCeEEEEEcCCc-eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc
Q 001403 810 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 887 (1084)
Q Consensus 810 ~~~s-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 887 (1084)
|+++ |.+++||+.++. +....+.+|...+...+||. |+++|++|+.|+.+++|++..++.+....||-....|++..
T Consensus 231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9998 899999999987 77778899999999999999 99999999999999999999999999999999888888764
No 34
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.6e-35 Score=286.68 Aligned_cols=293 Identities=22% Similarity=0.317 Sum_probs=267.8
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
++..+.|.+|...|+.+-|+|+-..+|+++.| .+|++||..++.... -++||++.|..++|+..|++|
T Consensus 98 p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d---------~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk~l 165 (406)
T KOG0295|consen 98 PNLVQKLAGHRSSVTRVIFHPSEALVVSASED---------ATIKVFDTETGELER---SLRGHTDSVFDISFDASGKYL 165 (406)
T ss_pred CCchhhhhccccceeeeeeccCceEEEEecCC---------ceEEEEEccchhhhh---hhhccccceeEEEEecCccEE
Confidence 46677889999999999999999999999888 999999999987732 389999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
|+++.|-.+++||.++. .++...+.+|...|.+++|-|.|. ++++++.|.+|+.|++.+|.+++++.+|...|..+
T Consensus 166 ~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v 241 (406)
T KOG0295|consen 166 ATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMV 241 (406)
T ss_pred EecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHhEEEE
Confidence 99999999999999873 233447789999999999999998 89999999999999999999999999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC---------------CEEEEEeeCCCCCee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGTSKEGESF 548 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~---------------~~l~~~~~~~~~~~~ 548 (1084)
.. ..||.++++++.|.++++|-+.+.++...+..|..++.+++|.|.. +++.+++. |++
T Consensus 242 ~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr----Dkt 315 (406)
T KOG0295|consen 242 RV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR----DKT 315 (406)
T ss_pred Ee--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc----cce
Confidence 88 6688999999999999999999999999999999999999997742 35666654 778
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
|++||+.++.++.++.+|. ..|..++|+|.|++|+++.+|+++++||+.++++++.+..+.+ .+.++.|+.+..+
T Consensus 316 Ik~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~p~ 390 (406)
T KOG0295|consen 316 IKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTAPY 390 (406)
T ss_pred EEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCCce
Confidence 9999999999999999999 9999999999999999999999999999999999999998877 4899999999999
Q ss_pred EEEEECCCeEEEEEc
Q 001403 629 LAVIANENRIKILET 643 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~ 643 (1084)
+++|+-|.++++|.-
T Consensus 391 VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 391 VVTGSVDQTVKVWEC 405 (406)
T ss_pred EEeccccceeeeeec
Confidence 999999999999963
No 35
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=5.7e-34 Score=289.61 Aligned_cols=334 Identities=19% Similarity=0.318 Sum_probs=274.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccC--Ccc-----ccceeeeec----ccccEeEEEeecCCCcEEEEEEe
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHG--GSD-----ARQQLEIDA----HVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~--~~~-----~~~~~~l~~----h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
|+.+|.+.+|+|-.. .||+|+.|-+.++|++.. ... ++......+ ....|++++|+.+|. +||+|+
T Consensus 177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~LatG~ 254 (524)
T KOG0273|consen 177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLATGS 254 (524)
T ss_pred CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEEEee
Confidence 999999999999666 999999999999999874 111 111111111 224799999999999 899999
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
.||.+++|+ .+|..+.++..|.+||.++.| +..|.+|++++.||++.+||..++.....+..+..+...+.|-.+..
T Consensus 255 ~~G~~riw~-~~G~l~~tl~~HkgPI~slKW--nk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~ 331 (524)
T KOG0273|consen 255 EDGEARIWN-KDGNLISTLGQHKGPIFSLKW--NKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDE 331 (524)
T ss_pred cCcEEEEEe-cCchhhhhhhccCCceEEEEE--cCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCce
Confidence 999999999 788889999999999999999 56788999999999999999999998888888887767777866555
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+++++. ++.|+++.+....++.++.+|. ++|.++.|+|.+..|++++.|++++||++........+..|..
T Consensus 332 -F~ts~t----d~~i~V~kv~~~~P~~t~~GH~---g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk- 402 (524)
T KOG0273|consen 332 -FATSST----DGCIHVCKVGEDRPVKTFIGHH---GEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK- 402 (524)
T ss_pred -EeecCC----CceEEEEEecCCCcceeeeccc---CceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-
Confidence 444443 7779999999999999999988 9999999999999999999999999999876665555544432
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.|..+.|+|+|
T Consensus 403 -ei~t~~wsp~g-------------------------------------------------------------------- 413 (524)
T KOG0273|consen 403 -EIYTIKWSPTG-------------------------------------------------------------------- 413 (524)
T ss_pred -ceeeEeecCCC--------------------------------------------------------------------
Confidence 34444444433
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 774 (1084)
.. .
T Consensus 414 --------------------------------------------~v---------------------------------~ 416 (524)
T KOG0273|consen 414 --------------------------------------------PV---------------------------------T 416 (524)
T ss_pred --------------------------------------------Cc---------------------------------c
Confidence 20 0
Q ss_pred ecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
|++ ..+..+++++ |++|++||+..+.++.+|..|..+|.+++||| +++++|+
T Consensus 417 ~n~--------------------------~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~-~g~ylAs 469 (524)
T KOG0273|consen 417 SNP--------------------------NMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSP-NGRYLAS 469 (524)
T ss_pred CCC--------------------------cCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecC-CCcEEEe
Confidence 000 0233445544 89999999999999999999999999999999 9999999
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
|+.||.|.+|+..+++.++.+.+. +.|..++|+.+|.+|..+-.|+.+++-|+.
T Consensus 470 Gs~dg~V~iws~~~~~l~~s~~~~-~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 470 GSLDGCVHIWSTKTGKLVKSYQGT-GGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cCCCCeeEeccccchheeEeecCC-CeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999998854 559999999999999999999999998874
No 36
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=5.6e-34 Score=280.90 Aligned_cols=335 Identities=15% Similarity=0.180 Sum_probs=287.8
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..-+.++..|+++|.+++.+|+.+++|+|.-| ..-.||+..++....+ +.||+..|+++.||.||.+|
T Consensus 54 DdS~~tF~~H~~svFavsl~P~~~l~aTGGgD---------D~AflW~~~~ge~~~e---ltgHKDSVt~~~FshdgtlL 121 (399)
T KOG0296|consen 54 DDSLVTFDKHTDSVFAVSLHPNNNLVATGGGD---------DLAFLWDISTGEFAGE---LTGHKDSVTCCSFSHDGTLL 121 (399)
T ss_pred ccceeehhhcCCceEEEEeCCCCceEEecCCC---------ceEEEEEccCCcceeE---ecCCCCceEEEEEccCceEE
Confidence 34567889999999999999999999998766 7889999999986655 78999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
|+|+.+|.|+||+..++.... .+...-+.+.-+.|+|-+. +|+.|+.||.+.+|.+.++...+.+.||..++++=
T Consensus 122 ATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G 196 (399)
T KOG0296|consen 122 ATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCG 196 (399)
T ss_pred EecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecCCCCCcccc
Confidence 999999999999999987554 4545566788899999888 89999999999999999988889999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
.|.| +|+.++++..||+|++|++.+..+....... .....++.++..+..++.|.. ++.+++-+..+|+.+..
T Consensus 197 ~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~~sgKVv~~ 270 (399)
T KOG0296|consen 197 EFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNNGSGKVVNC 270 (399)
T ss_pred cccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEccccceEEEe
Confidence 9955 6899999999999999999999988877643 346778999999999998875 56688888888888877
Q ss_pred eec--------cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~--------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..+ +......|.++.++..-+..++|+-||+|.|||+....+.+...... .|..+.|-+ ..+|++++.
T Consensus 271 ~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~---~V~~l~w~~-t~~l~t~c~ 346 (399)
T KOG0296|consen 271 NNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHED---GVTKLKWLN-TDYLLTACA 346 (399)
T ss_pred cCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCC---ceEEEEEcC-cchheeecc
Confidence 663 22112334555556666788999999999999999888877776544 389999998 789999999
Q ss_pred CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 635 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 635 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+|.|+.||.+++++.....+|...|.+++++ |+.+++++++.|++.++|+.
T Consensus 347 ~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 347 NGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred CceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEec
Confidence 9999999999999999999999999999997 67888999999999988875
No 37
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=6.5e-31 Score=279.63 Aligned_cols=573 Identities=12% Similarity=0.122 Sum_probs=399.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
..+|.++|||.+.+.||.+-.+|.|.||++..+-.... .+.++. ..|.+++|++.++ |++.+.+|.|.-||+.+
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~ 99 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT 99 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence 46899999999999999999999999999998754433 455554 5899999997665 88999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
++.++.+....+.|++++.++.. ..++.|+.||.+..++...+.... .+....+++.+++|+|++..++.|+.
T Consensus 100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~--- 174 (691)
T KOG2048|consen 100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI--- 174 (691)
T ss_pred CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence 99999999999999999997754 689999999977777766655544 34455679999999999999999986
Q ss_pred CCeeEEEecCCCceEeeeee----ccc-cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 545 GESFLVEWNESEGAIKRTYQ----GLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~----~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
++.|++||..++..+.... +.. ....-|+++.|-.+ ..+++|..-|+|.+||...+.+++.+..+.. .|.+
T Consensus 175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl~ 250 (691)
T KOG2048|consen 175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVLA 250 (691)
T ss_pred -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--ceeE
Confidence 7789999999988776221 111 01234777877755 5899999999999999999999999887755 5999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
++..+++.++++++.|+.|.-|...++..- . +..
T Consensus 251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------w----------------------------------v~~---- 284 (691)
T KOG2048|consen 251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------W----------------------------------VIN---- 284 (691)
T ss_pred EEEcCCCCeEEEccCCCceEEEEecCCccc--------e----------------------------------eee----
Confidence 999999999999999999888876654220 0 000
Q ss_pred CccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCC
Q 001403 700 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH 779 (1084)
Q Consensus 700 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~ 779 (1084)
.....|...+.+++..++ .+++++.|.++.+-.....+ ..+-
T Consensus 285 --------------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h-- 326 (691)
T KOG2048|consen 285 --------------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH-- 326 (691)
T ss_pred --------------------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh--
Confidence 011237778888888877 68888888887763321100 0000
Q ss_pred CCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee---------EEEEcCCCCCeEEEEEcCCCCcE
Q 001403 780 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 780 ~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~ 850 (1084)
.+.. ....-.-+...|..++++......+.+|.+.+... .+........|.+.+.|| +|++
T Consensus 327 ---~~~~------~~p~~~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~ 396 (691)
T KOG2048|consen 327 ---RQKN------LFPASDRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL 396 (691)
T ss_pred ---hccc------cccccceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence 0000 00011123445666666777788889998865521 122233456799999999 9999
Q ss_pred EEEEeCCCeEEEEEcCCceee-----eeecccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVI-----SKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV 924 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~ 924 (1084)
+|.+.- ..++||.+.....+ .......-....+.|+-|+..++.++ .+..+.+.++++...+....++.. +
T Consensus 397 Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~- 473 (691)
T KOG2048|consen 397 IAISTV-SRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A- 473 (691)
T ss_pred EEEeec-cceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c-
Confidence 998773 45788877652222 11122334577889999998888888 778888888888664443333332 1
Q ss_pred ccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCC
Q 001403 925 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 925 ~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
.-+.|..+..||||++||+ +..+.|.+|++++++...... .-+..|+.++|+| +-..|+.+..|+.|.-+|++..
T Consensus 474 --~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 474 --KCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred --CCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence 1237999999999999999 689999999999887655432 2358999999995 5667888889999999999554
Q ss_pred ceeEEeccc-cccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCCCCcccCCCCCCccccc
Q 001403 1003 EVQCRILST-AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDR 1080 (1084)
Q Consensus 1003 ~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1080 (1084)
++-.....- ..++..+..-.-...-+.|+|.+ ...+...+.+-+.+.|+.- ..+++.+..-.....|+|+++
T Consensus 551 ~l~~ws~~nt~nlpk~~~~l~~~~~gisfd~~n-~s~~~~~~a~w~~~id~~~-----~lp~~~~~~~~~~~kt~egn~ 623 (691)
T KOG2048|consen 551 NLTRWSKNNTRNLPKEPKTLIPGIPGISFDPKN-SSRFIVYDAHWSCLIDFSL-----PLPSDEDGPLKALKKTREGNL 623 (691)
T ss_pred hhhhhhhccccccccChhhcCCCCceEEeCCCC-ccEEEEEcCcEEEEEecCC-----CCCchhhcccccCCcccccch
Confidence 432111100 01111111111112346788753 4444445556666766632 233344444446667777654
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.8e-32 Score=295.34 Aligned_cols=576 Identities=14% Similarity=0.183 Sum_probs=398.9
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
+..+..|..++|+|...+++++-..|.|++||..-+.++. .+..|.++|..++|+|++. +++|||.|..|+||+.
T Consensus 6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWnY 80 (1202)
T KOG0292|consen 6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWNY 80 (1202)
T ss_pred hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEec
Confidence 3356789999999999999999999999999999998777 7889999999999999999 9999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
.+.+++.++.||-+-|..+.|++. -.+++++|.|.+|+||++.+.+++..+++|.+-|.|..|.|....+++++-
T Consensus 81 k~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--- 155 (1202)
T KOG0292|consen 81 KTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--- 155 (1202)
T ss_pred ccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc---
Confidence 999999999999999999999764 479999999999999999999999999999999999999999999999987
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+.+|++||+..-+....-.+.- ...+.... +..=+.|+.|- -..+.+++|. ..|+-++|+|
T Consensus 156 -DQTVRVWDisGLRkk~~~pg~~--e~~~~~~~----~~~dLfg~~Da----------VVK~VLEGHD--RGVNwaAfhp 216 (1202)
T KOG0292|consen 156 -DQTVRVWDISGLRKKNKAPGSL--EDQMRGQQ----GNSDLFGQTDA----------VVKHVLEGHD--RGVNWAAFHP 216 (1202)
T ss_pred -cceEEEEeecchhccCCCCCCc--hhhhhccc----cchhhcCCcCe----------eeeeeecccc--cccceEEecC
Confidence 6679999986533322211100 00111000 00001122221 2234455554 4699999999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCC--eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 625 NGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
.-..+++|++|+.|++|.+...+ .+.+.++|...|.++-|+ |..+.+++.+.|+++
T Consensus 217 TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 217 TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSEDKSI 274 (1202)
T ss_pred CcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCCCccE
Confidence 99999999999999999998764 456789999999999997 567889999999999
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc--CcCcc---cceecCCeeecC
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL--TLSTE---ATTKVPPRLYQP 777 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~--~~~~~---~~~~~~~~~~~~ 777 (1084)
++||+......++... ..++...++..|..+ +++++.|+-+.||.+..+.. -..+. ......++.+|.
T Consensus 275 rVwDm~kRt~v~tfrr------endRFW~laahP~lN-LfAAgHDsGm~VFkleRErpa~~v~~n~LfYvkd~~i~~~d~ 347 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFRR------ENDRFWILAAHPELN-LFAAGHDSGMIVFKLERERPAYAVNGNGLFYVKDRFIRSYDL 347 (1202)
T ss_pred EEEecccccceeeeec------cCCeEEEEEecCCcc-eeeeecCCceEEEEEcccCceEEEcCCEEEEEccceEEeeec
Confidence 9999987666655532 456788999999998 55556666677787764332 00110 111234666777
Q ss_pred CCCCccccccCcCCC-CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEE-c--CCCCCeEEEEEcCCCCcE
Q 001403 778 RHGPQFMVNDTTDSN-SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTI-M--PPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~-~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~-~--~~~~~i~~l~~s~~d~~~ 850 (1084)
.+.+......++..+ ...++.++.++|....+..++ .+...++.+.....-..- . .......++-... +++
T Consensus 348 ~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~a~fvar--Nrf 425 (1202)
T KOG0292|consen 348 RTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEGALFVAR--NRF 425 (1202)
T ss_pred cccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCceEEEEe--cce
Confidence 665544444443321 246788999999877666664 366666655432110000 0 0111222332222 223
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
.+.--.+..+.+=++.+. ..+.+.-. ..+..+-+.-+|.+|+. ....|.++|++..+... .++. ..
T Consensus 426 avl~k~~~~v~ik~l~N~-vtkkl~~~-~~~~~IF~ag~g~lll~--~~~~v~lfdvQq~~~~~--si~~--------s~ 491 (1202)
T KOG0292|consen 426 AVLDKSNEQVVIKNLKNK-VTKKLLLP-ESTDDIFYAGTGNLLLR--SPDSVTLFDVQQKKKVG--SIKV--------SK 491 (1202)
T ss_pred EEEEecCcceEEecccch-hhhcccCc-ccccceeeccCccEEEE--cCCeEEEEEeecceEEE--EEec--------Cc
Confidence 222223445555555432 22233211 23455666667776665 34459999999854322 1221 15
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc--eeEEe
Q 001403 931 ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE--VQCRI 1008 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~--~~~~~ 1008 (1084)
+..+.||+|..++|.-+..+|.|.+.+ .+.+.... ..-+|.+-+|..||-+|.+... .|+ |-+.+|. .++++
T Consensus 492 vkyvvws~dm~~vAll~Kh~i~i~~kk-L~l~~sih--Etiriksgawde~gVfiYtT~n--Hik-Yal~~GD~GIikTL 565 (1202)
T KOG0292|consen 492 VKYVVWSNDMSRVALLSKHTITIADKK-LELLCSIH--ETIRIKSGAWDEDGVFIYTTLN--HIK-YALENGDSGIIKTL 565 (1202)
T ss_pred eeEEEEcCccchhhhcccceEEEEecc-hhheecch--heeEeeeceeccCceEEEEehh--hhh-hhhccCCcceEEec
Confidence 789999999999999888899999864 33443322 1567888899999988888754 344 4444442 23333
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
. ..++.+.+. |+.+.+-..|+.+.+..+...+
T Consensus 566 d-----------~~iyitkv~-----gn~V~cl~rd~~~~~~~IDptE 597 (1202)
T KOG0292|consen 566 D-----------KPIYITKVK-----GNKVFCLNRDGEIECLTIDPTE 597 (1202)
T ss_pred c-----------cceEEEEee-----CCEEEEEecCCCeEEEeechHH
Confidence 3 225554443 7899999999999988876554
No 39
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=4.1e-34 Score=280.09 Aligned_cols=299 Identities=18% Similarity=0.260 Sum_probs=269.7
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
+-.|..+.+.+.+|.+.|.|+++-|-..++|+|+.| ++++|||+.++..... +.||-..|..+++|+-
T Consensus 137 WHapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~D---------rtikIwDlatg~Lklt---ltGhi~~vr~vavS~r 204 (460)
T KOG0285|consen 137 WHAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSAD---------RTIKIWDLATGQLKLT---LTGHIETVRGVAVSKR 204 (460)
T ss_pred ccCcceehhhhhhccceEEEEeeCCCceeEEecCCC---------ceeEEEEcccCeEEEe---ecchhheeeeeeeccc
Confidence 556778899999999999999999999999999988 9999999999887765 8899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~ 479 (1084)
-.||.+++.|+.|+-||++..+.++ .+.||-..|.|++..|.-+ .|++|+.|.+++|||+++...+..+.||..+
T Consensus 205 HpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~GH~~~ 279 (460)
T KOG0285|consen 205 HPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLSGHTNP 279 (460)
T ss_pred CceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEecCCCCc
Confidence 9999999999999999999998888 6779999999999999988 8999999999999999999999999999999
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|.++.+.+. ...+++||.|++|++||+..++....+..|...+.+++.+|....+++++.+ .|..|++..|..
T Consensus 280 V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~w~~p~g~f 352 (460)
T KOG0285|consen 280 VASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQWKLPEGEF 352 (460)
T ss_pred ceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----cceeccCCccch
Confidence 999988553 3579999999999999999999999999999999999999999999998753 499999999999
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC---CC---CCCCcceEEEecCCCEEEEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA---GG---GLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~---~~---~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+..+.+|. .-+.+++.+.|+ ++++|+++|.+.+||.++|-..+.... .+ ....|.+.+|...|..|+++.
T Consensus 353 ~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~e 428 (460)
T KOG0285|consen 353 LQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGE 428 (460)
T ss_pred hhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEecc
Confidence 99999988 889999998775 889999999999999999876655421 11 123478899999999999999
Q ss_pred CCCeEEEEEcCCC
Q 001403 634 NENRIKILETPES 646 (1084)
Q Consensus 634 ~dg~i~iwd~~~~ 646 (1084)
.|.+|++|.-...
T Consensus 429 adKtIk~~keDe~ 441 (460)
T KOG0285|consen 429 ADKTIKMYKEDEH 441 (460)
T ss_pred CCcceEEEecccc
Confidence 9999999976543
No 40
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=100.00 E-value=6e-32 Score=276.61 Aligned_cols=503 Identities=17% Similarity=0.215 Sum_probs=363.5
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG 400 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg 400 (1084)
....++...||++.|.|++.+||.-++|+|-.--.+|..+ ...++|||..+-.-+.. +..-...|.|++||+ .|
T Consensus 93 ee~~Qr~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~-~phvriWdsv~L~TL~V---~g~f~~GV~~vaFsk~~~G 168 (626)
T KOG2106|consen 93 EERSQRHYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPL-QPHVRIWDSVTLSTLHV---IGFFDRGVTCVAFSKINGG 168 (626)
T ss_pred hhhhcccccCCCCceEEEeecCCceeeccCcccccCCCcC-CCeeeecccccceeeee---eccccccceeeeecccCCC
Confidence 3456778889999999999999999999865443334433 37899999765444332 445667999999998 45
Q ss_pred CEEEEE--eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE---ecc
Q 001403 401 SLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG 475 (1084)
Q Consensus 401 ~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~---~~~ 475 (1084)
.+|+.. +.+..+.|||+..+.... ..+...+.|....|.|.+.. ++++++ .+.+.+|+++.+....+ ++.
T Consensus 169 ~~l~~vD~s~~h~lSVWdWqk~~~~~---~vk~sne~v~~a~FHPtd~n-liit~G-k~H~~Fw~~~~~~l~k~~~~fek 243 (626)
T KOG2106|consen 169 SLLCAVDDSNPHMLSVWDWQKKAKLG---PVKTSNEVVFLATFHPTDPN-LIITCG-KGHLYFWTLRGGSLVKRQGIFEK 243 (626)
T ss_pred ceEEEecCCCccccchhhchhhhccC---cceeccceEEEEEeccCCCc-EEEEeC-CceEEEEEccCCceEEEeecccc
Confidence 666665 445678999999886655 34456678999999999887 677777 68899999998876543 333
Q ss_pred C-CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 476 H-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 476 h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
+ ...|.+++|.+++ -+++|..+|.|.||+............|.+.|.+++...+|.+|- ++. |..|..||
T Consensus 244 ~ekk~Vl~v~F~eng---dviTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-GgK----DRki~~Wd- 314 (626)
T KOG2106|consen 244 REKKFVLCVTFLENG---DVITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-GGK----DRKIILWD- 314 (626)
T ss_pred ccceEEEEEEEcCCC---CEEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-cCc----cceEEecc-
Confidence 3 3678999996544 389999999999999987776666568999999999999998876 654 67799999
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..-+.++..+... ..+.++.++=.. .-|++|...+.|..=.++++-.+..+ +|+. ....++.+|+.+.+++++.
T Consensus 315 ~~y~k~r~~elPe-~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~~~f~~~v~-gh~d--elwgla~hps~~q~~T~gq 388 (626)
T KOG2106|consen 315 DNYRKLRETELPE-QFGPIRTVAEGK--GDILVGTTRNFILQGTLENGFTLTVQ-GHGD--ELWGLATHPSKNQLLTCGQ 388 (626)
T ss_pred ccccccccccCch-hcCCeeEEecCC--CcEEEeeccceEEEeeecCCceEEEE-eccc--ceeeEEcCCChhheeeccC
Confidence 3333333333322 236777766433 33888877777766666665544443 2332 5789999999999999999
Q ss_pred CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcc
Q 001403 635 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE 714 (1084)
Q Consensus 635 dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~ 714 (1084)
|+.+++|+ ..+.. --+.-..+..|+.|.|.+ .+++|... |...+.|.++.
T Consensus 389 dk~v~lW~--~~k~~-wt~~~~d~~~~~~fhpsg-~va~Gt~~----------------------G~w~V~d~e~~---- 438 (626)
T KOG2106|consen 389 DKHVRLWN--DHKLE-WTKIIEDPAECADFHPSG-VVAVGTAT----------------------GRWFVLDTETQ---- 438 (626)
T ss_pred cceEEEcc--CCcee-EEEEecCceeEeeccCcc-eEEEeecc----------------------ceEEEEecccc----
Confidence 99999999 33333 233445677888888776 55555443 33333333321
Q ss_pred ceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCC
Q 001403 715 CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 794 (1084)
Q Consensus 715 ~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1084)
..+.+.. ...++..+.|+|+|.+++.++.|+.|++|.+..+... ... . +.-+.
T Consensus 439 -~lv~~~~--d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~---------------------y~r-~--~k~~g 491 (626)
T KOG2106|consen 439 -DLVTIHT--DNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK---------------------YSR-V--GKCSG 491 (626)
T ss_pred -eeEEEEe--cCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE---------------------EEE-e--eeecC
Confidence 1111111 2678999999999999999999999999988654321 000 0 01144
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEE-----------------E-cCCCCCeEEEEEcCCCCcEEEEEe
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT-----------------I-MPPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~-----------------~-~~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
.+|+.+.||+|++++.+-+ |-.|-.|.....+.... + -.+...|..++-+. +.+++|+|.
T Consensus 492 s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~-~~~~lA~gd 570 (626)
T KOG2106|consen 492 SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSH-CEKLLASGD 570 (626)
T ss_pred ceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhh-hhhhhhccc
Confidence 8899999999999999988 67788995432222111 1 12445667777787 889999999
Q ss_pred CCCeEEEEEcCCce---eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 856 DDSTILIYNARSSE---VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
+.|+|++|...-.+ ...++.+|++.|++++|+.+...|++.+.|..|..|++
T Consensus 571 d~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 571 DFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 99999999887544 34677899999999999999999998889999999986
No 41
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=1.2e-33 Score=271.41 Aligned_cols=290 Identities=19% Similarity=0.243 Sum_probs=254.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
-.|.+|+++|..+.|+|||.+||+|..| ..|.+|++.....-+-. +++|++.|..+.|.+|+..|++++
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~D---------r~I~LWnv~gdceN~~~--lkgHsgAVM~l~~~~d~s~i~S~g 109 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSD---------RAIVLWNVYGDCENFWV--LKGHSGAVMELHGMRDGSHILSCG 109 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCc---------ceEEEEeccccccceee--eccccceeEeeeeccCCCEEEEec
Confidence 3478999999999999999999999988 99999998654443332 779999999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|.+|+.||+++|++++ .+++|..-|+.+.-+.-|.. ++.+++.|+++++||+++..+++++. ....++++.|
T Consensus 110 tDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f-- 182 (338)
T KOG0265|consen 110 TDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGF-- 182 (338)
T ss_pred CCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cceeEEEEEe--
Confidence 99999999999998777 67899999999996666665 78899999999999999999888875 4567899999
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC----ceEeeee
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----GAIKRTY 563 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----~~~~~~~ 563 (1084)
...+..+.+|+-|+.|++||++.......+.+|...|+.+..+++|.++.+-+. +..+++||.+- .+++..+
T Consensus 183 ~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p~~R~v~if 258 (338)
T KOG0265|consen 183 KDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAPSQRCVKIF 258 (338)
T ss_pred cccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCCCCceEEEe
Confidence 556678999999999999999999999999999999999999999999999876 77899999874 4557788
Q ss_pred ecccc-ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 564 QGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 564 ~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.++.. .......++|+|+++.+-+|+.|..+++||......+..+.+|.+ .|+++.|+|...++.+++.|.+|.+=
T Consensus 259 ~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~g--svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 259 QGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYG--SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcce--eEEEeeecCCCcEEEEeccCceeEee
Confidence 87751 113356779999999999999999999999999899999987755 69999999999999999999998763
No 42
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.8e-33 Score=263.38 Aligned_cols=291 Identities=22% Similarity=0.330 Sum_probs=240.5
Q ss_pred eeeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCC-ccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGA-CSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+.+++|++.|+.++|+|- |..||+++-| +.|+||+... ........+-.+|+..|..++|+|.|++|
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~D---------k~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~L 76 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTD---------KAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYL 76 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCC---------ceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEE
Confidence 45789999999999999999 9999999877 9999999984 33333333456899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---ceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~~~~~h~~~v 480 (1084)
|+++.|.++.||.-..++ +.....++||...|.|++||++|. +||+|+.|+.|-||.+..+ .++..++.|...|
T Consensus 77 a~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDV 153 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDV 153 (312)
T ss_pred EEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccc
Confidence 999999999999987654 455668999999999999999999 8999999999999998754 4667889999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
..+.|+|..+ +|+++|.|.+|++|+-... ....++..+...+.+++|.+.|..|++++. ++++.||-..+
T Consensus 154 K~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~~~- 226 (312)
T KOG0645|consen 154 KHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRLYT- 226 (312)
T ss_pred cEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeeecc-
Confidence 9999998764 9999999999999976632 346788888889999999999999999975 77799998552
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe------EEEEEcCCCCCCCcceEEEecC-CCEEE
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNKN-GTLLA 630 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-~~~l~ 630 (1084)
.+.+. |...++.+.|. ...|++++.|+.|++|.-...- .+... .+.+...|+++.|+|. .++|+
T Consensus 227 ----~~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~-~~aHe~dVNsV~w~p~~~~~L~ 297 (312)
T KOG0645|consen 227 ----DLSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKK-EGAHEVDVNSVQWNPKVSNRLA 297 (312)
T ss_pred ----Ccchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhh-hcccccccceEEEcCCCCCcee
Confidence 12221 24788999998 5689999999999999765421 11111 1223347999999994 78999
Q ss_pred EEECCCeEEEEEcC
Q 001403 631 VIANENRIKILETP 644 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~ 644 (1084)
++++||.+++|.+.
T Consensus 298 s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 298 SGGDDGIVNFWELE 311 (312)
T ss_pred ecCCCceEEEEEec
Confidence 99999999999864
No 43
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.8e-34 Score=284.73 Aligned_cols=294 Identities=16% Similarity=0.178 Sum_probs=253.5
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.++..|+++|+.+.||++|+|||+++.|.+..||++.....++..+++.+|..+|..+.||||.+ ++++|+.|..+.+
T Consensus 218 qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~l 295 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSL 295 (519)
T ss_pred hhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheee
Confidence 35778999999999999999999999999999999987766777779999999999999999999 8999999999999
Q ss_pred EECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 462 WDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 462 wd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
||+.+|.+.+.+. +|...+.+++|.| ||..+++|+.|+.+..||++......--......|.+++.++||+++++..
T Consensus 296 wDv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~ 373 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVT 373 (519)
T ss_pred ccCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEe
Confidence 9999999887774 4578899999955 778999999999999999986442221122235799999999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. +..|++++..+.........+ .+|++.++|.+++++++.-.+..+++||++....+..+.++.....+..-
T Consensus 374 ~----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 374 V----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred c----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 6 566999998876665555444 48999999999999999999999999999988888888877655556666
Q ss_pred EEec-CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 621 CFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 621 ~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
||.- +..++++|+.|+.|+||+..+++++..+.||...+++++++|. +..++|++++|
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~---------------------~p~m~ASasDD 504 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPA---------------------DPEMFASASDD 504 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCC---------------------CHHHhhccCCC
Confidence 7765 5589999999999999999999999999999999999999974 66779999999
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
|+||||-..
T Consensus 505 gtIRIWg~~ 513 (519)
T KOG0293|consen 505 GTIRIWGPS 513 (519)
T ss_pred CeEEEecCC
Confidence 999999865
No 44
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.3e-34 Score=279.80 Aligned_cols=285 Identities=20% Similarity=0.285 Sum_probs=263.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.||..+|+.+-|.|+-..+++++.|++|++||..+|+..+ .++||...|..++|+..|+ ++++++.|-.+++||
T Consensus 104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd 178 (406)
T KOG0295|consen 104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD 178 (406)
T ss_pred hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence 67799999999999999999999999999999999998755 7899999999999999999 899999999999999
Q ss_pred CCC-CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~-g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++ -++++.+.+|...|.+++|.|.+ .++++++.|.+|+.|+++++-+..++.+|...+..+..+.||..+++++.
T Consensus 179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~- 255 (406)
T KOG0295|consen 179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN- 255 (406)
T ss_pred HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence 887 57788899999999999997754 79999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC---------------CCEEEEEECCCcEEEEECCCCeEEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~ 607 (1084)
+.++++|-..++++...+..|. .+|.+++|.|. +.++.+++.|++|++||+.+|.++.+
T Consensus 256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t 329 (406)
T KOG0295|consen 256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT 329 (406)
T ss_pred ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence 7779999999999999999998 89999999763 25889999999999999999999999
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCC
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK 687 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s 687 (1084)
+.+|.. .|..++|+|.|++|+++.+|+++++||+.+.+++..+..|..-++++.|..
T Consensus 330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~--------------------- 386 (406)
T KOG0295|consen 330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK--------------------- 386 (406)
T ss_pred Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC---------------------
Confidence 998766 699999999999999999999999999999999999999999999999873
Q ss_pred CCCCccceecccCcccccc
Q 001403 688 EDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 688 ~~~~~l~~~~~d~~i~~w~ 706 (1084)
+..++++|+-|.++++|.
T Consensus 387 -~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 387 -TAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred -CCceEEeccccceeeeee
Confidence 444789999999999986
No 45
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.6e-33 Score=268.18 Aligned_cols=277 Identities=18% Similarity=0.303 Sum_probs=241.6
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.||++.|..+.|+|+|.+||+|+.|..|.+|++.... .-...+++|+++|+.+.|.+|+. .+++++.|++|+.|
T Consensus 42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w 117 (338)
T KOG0265|consen 42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW 117 (338)
T ss_pred hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence 377899999999999999999999999999999976543 33347889999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|+++|++++++++|..-|+++... .-+..++.+++.||++++||++.......++ ....++++.|..++..+.+++-
T Consensus 118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI- 194 (338)
T KOG0265|consen 118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI- 194 (338)
T ss_pred ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc-
Confidence 999999999999999999999743 2234678889999999999999776665553 3447899999999999999987
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEEcCCCCCC--C
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLP--E 616 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~ 616 (1084)
++.|.+||++.+.....+.||. ++|+.+..+|+|.++++-+.|.++++||++- .+++..+.++.+.- .
T Consensus 195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn 268 (338)
T KOG0265|consen 195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN 268 (338)
T ss_pred ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence 5559999999999999999999 9999999999999999999999999999874 34577777654432 2
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
...++|+|++..+.+|+.|..+++||......+..+.+|.+.|++++|.|..+.+.
T Consensus 269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iil 324 (338)
T KOG0265|consen 269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIIL 324 (338)
T ss_pred cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEE
Confidence 45789999999999999999999999999999999999999999999997655543
No 46
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.3e-32 Score=309.11 Aligned_cols=296 Identities=21% Similarity=0.344 Sum_probs=255.8
Q ss_pred eeecccC-CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 327 AQTLIEG-SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 327 ~~~l~~h-~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
.+++.+| ...|.++.|||||++++++..| +.+++|+..+...... ..+.+|...|.+++|+|||+++++
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~---------~~i~~~~~~~~~~~~~-~~l~~h~~~v~~~~fs~d~~~l~s 220 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSD---------GLIRIWKLEGIKSNLL-RELSGHTRGVSDVAFSPDGSYLLS 220 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCC---------CcEEEeecccccchhh-ccccccccceeeeEECCCCcEEEE
Confidence 5566555 7899999999999999999888 9999999966552112 225889999999999999999999
Q ss_pred EeCCCEEEEEEc-cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
++.|++|+|||+ ..+..++ ++.+|...|++++|+|+|+ ++++|+.|++|+|||+++++++..+.+|.+.|.+++
T Consensus 221 ~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~ 295 (456)
T KOG0266|consen 221 GSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLA 295 (456)
T ss_pred ecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence 999999999999 4444444 7889999999999999997 899999999999999999999999999999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
| ++++.+|++++.||.|++||+.++. ....+..+.. .++++.|+|++.++++++. ++.+.+||+..+...
T Consensus 296 f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~~~~ 369 (456)
T KOG0266|consen 296 F--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSGKSV 369 (456)
T ss_pred E--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCCcce
Confidence 9 5578899999999999999999988 3344444443 5999999999999999986 667999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--CCCeE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NENRI 638 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i 638 (1084)
..+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..+. ...+..+.++|..+++++++ .|+.+
T Consensus 370 ~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d~~~ 448 (456)
T KOG0266|consen 370 GTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGDGLI 448 (456)
T ss_pred eeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCCceE
Confidence 9999998322245555667889999999999999999999999999998875 45688999999999999998 68999
Q ss_pred EEEEcC
Q 001403 639 KILETP 644 (1084)
Q Consensus 639 ~iwd~~ 644 (1084)
++|...
T Consensus 449 ~~w~~~ 454 (456)
T KOG0266|consen 449 RLWKYD 454 (456)
T ss_pred EEecCC
Confidence 999754
No 47
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.4e-32 Score=267.74 Aligned_cols=294 Identities=14% Similarity=0.229 Sum_probs=258.7
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++.||.+.|.|+++.|-..++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. ++++++.|+.|+.|
T Consensus 146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw 220 (460)
T KOG0285|consen 146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW 220 (460)
T ss_pred hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence 478899999999999999999999999999999999997544 7889999999999999888 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|++..+.++.+.||-..|.+++.+|.- ..|++|+.|.++++||+++......+.+|..+|..+.+.|-...+++|+.
T Consensus 221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~- 297 (460)
T KOG0285|consen 221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH- 297 (460)
T ss_pred echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence 999999999999999999999998765 58999999999999999999999999999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
+++|++||+..|+....+..|. ..+.+++.+|....+++++.| .|+-|++..|..++.+.++.. .+++++.
T Consensus 298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~~--iintl~~ 368 (460)
T KOG0285|consen 298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHNA--IINTLSV 368 (460)
T ss_pred ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhccccccc--eeeeeee
Confidence 7779999999999999998888 899999999999888888876 589999999999998876655 5888888
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
+.|+ ++++|+++|.+.+||.+++...+.......+ |+
T Consensus 369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqp-------------------------------------GS----- 405 (460)
T KOG0285|consen 369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQP-------------------------------------GS----- 405 (460)
T ss_pred ccCc-eEEEcCCceEEEEEecCcCcccccccccccC-------------------------------------Cc-----
Confidence 8877 7889999999999999988655543210000 00
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeecc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 756 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 756 (1084)
......|.+.+|...|.+|+++..|.+|++|.-.
T Consensus 406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred --------------------cccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 0134578889999999999999999999999743
No 48
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=281.03 Aligned_cols=282 Identities=20% Similarity=0.291 Sum_probs=248.0
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
-.|..|.|.|+|++|++|+.. |.+.+|+..+..... ++..|...|.++.||++|.++++|+.+|.|++
T Consensus 97 c~V~~v~WtPeGRRLltgs~S---------GEFtLWNg~~fnFEt---ilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKy 164 (464)
T KOG0284|consen 97 CPVNVVRWTPEGRRLLTGSQS---------GEFTLWNGTSFNFET---ILQAHDSPVRTMKWSHNGTWMISGDKGGMIKY 164 (464)
T ss_pred cceeeEEEcCCCceeEeeccc---------ccEEEecCceeeHHH---HhhhhcccceeEEEccCCCEEEEcCCCceEEe
Confidence 389999999999999998765 899999986543332 36679999999999999999999999999999
Q ss_pred EEccCCccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 415 YAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
|+..-.... .+.+ |...|++++|||+.. .+++++.||+|+|||....+.-..+.||.-.|.++.|+|.. .+
T Consensus 165 WqpnmnnVk----~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~k--gL 236 (464)
T KOG0284|consen 165 WQPNMNNVK----IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTK--GL 236 (464)
T ss_pred cccchhhhH----HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCcc--ce
Confidence 998765322 2334 558999999999888 79999999999999999998888899999999999998865 59
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
++++|.|..|++||.+++.++..+..|...|..+.|++++++|++++. |..++++|+++.+.++.+++|. ..+
T Consensus 237 iasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r~Hk---kdv 309 (464)
T KOG0284|consen 237 IASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYRGHK---KDV 309 (464)
T ss_pred eEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhhcch---hhh
Confidence 999999999999999999999999999999999999999999999986 6679999999999999999998 899
Q ss_pred EEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 574 SVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 574 ~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.++.|+|-. ..|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 310 ~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 310 TSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 999999975 4566699999999999986666655543 334469999999999999999999999999754
No 49
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.5e-29 Score=264.02 Aligned_cols=503 Identities=15% Similarity=0.182 Sum_probs=351.2
Q ss_pred cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 431 ~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
-...+|.++||+.+.+ .||.+-.||.|.+|++..+=. ...+.++ ...|.+++|. ++..|++.+.+|.|.-||+
T Consensus 23 ~~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~---e~~RLFS~g~sg~i~EwDl 97 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA---EGGRLFSSGLSGSITEWDL 97 (691)
T ss_pred eeccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc---cCCeEEeecCCceEEEEec
Confidence 3456799999999999 688899999999999987643 3455555 4679999996 4468999999999999999
Q ss_pred CCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 509 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 509 ~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
.+.+.+..+...++.|++++.+|.+..++.++. +|.+..++...++......-.. +.+.+.++.|+|++..+++|
T Consensus 98 ~~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~r-q~sRvLslsw~~~~~~i~~G 172 (691)
T KOG2048|consen 98 HTLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMR-QKSRVLSLSWNPTGTKIAGG 172 (691)
T ss_pred ccCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeeccc-ccceEEEEEecCCccEEEec
Confidence 999999999999999999999999999999875 5568888887776654433222 24789999999999999999
Q ss_pred ECCCcEEEEECCCCeEEEEEcC-----CC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEE
Q 001403 589 GDDHVIKIWDMNKVQLLTTIDA-----GG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 589 ~~dg~i~iwd~~~~~~~~~~~~-----~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
+.||.|++||..++..+..... .. ...-|.++.|-.++ .+++|...|+|.+||...+..++.+..
T Consensus 173 s~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~~~-------- 243 (691)
T KOG2048|consen 173 SIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSHSC-------- 243 (691)
T ss_pred ccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhhhh--------
Confidence 9999999999999988773321 11 11235566666544 788898899999999988877766654
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEE
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF 742 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~ 742 (1084)
|...|.+++..+++.+++
T Consensus 244 --------------------------------------------------------------h~adVl~Lav~~~~d~vf 261 (691)
T KOG2048|consen 244 --------------------------------------------------------------HDADVLALAVADNEDRVF 261 (691)
T ss_pred --------------------------------------------------------------hhcceeEEEEcCCCCeEE
Confidence 444566666667777777
Q ss_pred EeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEE
Q 001403 743 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYI 821 (1084)
Q Consensus 743 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd 821 (1084)
+++.|+.+..|....... -|-... ....|...+.+++..++ .+++|+ |..+.+-.
T Consensus 262 saGvd~~ii~~~~~~~~~-------------~wv~~~---------~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~ 317 (691)
T KOG2048|consen 262 SAGVDPKIIQYSLTTNKS-------------EWVINS---------RRDLHAHDVRSMAVIEN--ALISGGRDFTLAICS 317 (691)
T ss_pred EccCCCceEEEEecCCcc-------------ceeeec---------cccCCcccceeeeeecc--eEEecceeeEEEEcc
Confidence 777777777665443321 022111 11248889999999887 566665 66666654
Q ss_pred cCCceeEEEEcCCCCCeEE-EEEcCCCCcEEEEEeCCCeEEEEEcCCce---------eeeeecccccCEEEEEEcCCCC
Q 001403 822 VMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 822 ~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg~i~iwd~~~~~---------~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
....+...........-.+ +...| .++|..--.+..+.+|.+.+.- +.+........|.+.+.||||+
T Consensus 318 s~~~~~~~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~ 395 (691)
T KOG2048|consen 318 SREFKNMDHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGN 395 (691)
T ss_pred ccccCchhhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCC
Confidence 4331111111100011111 22333 3455555557778888876641 1222222345699999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E-eCCeEEEEEcCCcc--eeeEeec
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELT--CLKQWFP 967 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~i~vwd~~~~~--~~~~~~~ 967 (1084)
+++.+.- ..++||.+..........+....... -....+.|+-|+..++. + ....+.+.+..+.. .+.....
T Consensus 396 ~Ia~st~-~~~~iy~L~~~~~vk~~~v~~~~~~~---~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~ 471 (691)
T KOG2048|consen 396 LIAISTV-SRTKIYRLQPDPNVKVINVDDVPLAL---LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQS 471 (691)
T ss_pred EEEEeec-cceEEEEeccCcceeEEEeccchhhh---ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhcccc
Confidence 9998754 44889988864322222222211111 25778899999887777 4 56678888776543 2222222
Q ss_pred -CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCc
Q 001403 968 -ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1046 (1084)
Q Consensus 968 -~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1046 (1084)
+-...|..++.|+||+||++.+.+|.|.+|++++++...-.. .+. ....+++|+|.+.+.|+++..+++
T Consensus 472 ~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~---rln-------~~vTa~~~~~~~~~~lvvats~nQ 541 (691)
T KOG2048|consen 472 QAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV---RLN-------IDVTAAAFSPFVRNRLVVATSNNQ 541 (691)
T ss_pred ccCCCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh---ccC-------cceeeeeccccccCcEEEEecCCe
Confidence 236789999999999999999999999999999987763332 111 234567888767889999999999
Q ss_pred EEEEcCCC
Q 001403 1047 VYVIEPNE 1054 (1084)
Q Consensus 1047 v~vw~~~~ 1054 (1084)
|.-+|+..
T Consensus 542 v~efdi~~ 549 (691)
T KOG2048|consen 542 VFEFDIEA 549 (691)
T ss_pred EEEEecch
Confidence 99999933
No 50
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=9.5e-32 Score=248.75 Aligned_cols=293 Identities=15% Similarity=0.209 Sum_probs=253.5
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
..+|....++|..|.+.|.++.|+-||+|.+++..| ++|++|+...+..... +.||..+|..++.+.|
T Consensus 3 ~e~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsd---------rtvrLWNp~rg~likt---YsghG~EVlD~~~s~D 70 (307)
T KOG0316|consen 3 LELPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSD---------RTVRLWNPLRGALIKT---YSGHGHEVLDAALSSD 70 (307)
T ss_pred ccCcchhceeecccccceEEEEEccCCCEEEEcCCC---------ceEEeecccccceeee---ecCCCceeeecccccc
Confidence 356777889999999999999999999999998877 9999999988776644 7899999999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC--ceeeEeccCC
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRTYSFEGHG 477 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g--~~~~~~~~h~ 477 (1084)
...+|+|+.|..|.+||+++|+.++ .+++|.+.|+.+.|+.+.. .+++|+.|.++++||-++. ++++.+....
T Consensus 71 nskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQildea~ 145 (307)
T KOG0316|consen 71 NSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQILDEAK 145 (307)
T ss_pred ccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccchhhhhc
Confidence 9999999999999999999998877 7899999999999999998 8999999999999998754 6788898889
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
+.|.++.+ .+..+++|+.||++|.||++.+..... .-+.+|++++|++|++..++++. ++++++.|-.+|
T Consensus 146 D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sD--y~g~pit~vs~s~d~nc~La~~l----~stlrLlDk~tG 215 (307)
T KOG0316|consen 146 DGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSD--YFGHPITSVSFSKDGNCSLASSL----DSTLRLLDKETG 215 (307)
T ss_pred CceeEEEe----cccEEEeeccCCcEEEEEeecceeehh--hcCCcceeEEecCCCCEEEEeec----cceeeecccchh
Confidence 99999987 346899999999999999987655433 34568999999999999998886 777999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+++..+.+|......+ .++++....++++|++||.|++||+.....+..+..++. ..+..++++|.-..++++.. +.
T Consensus 216 klL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A~~-~~ 292 (307)
T KOG0316|consen 216 KLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITATG-HG 292 (307)
T ss_pred HHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEecC-Cc
Confidence 9999999998444333 346777788999999999999999999999999887654 34789999998777777765 34
Q ss_pred EEEEE
Q 001403 638 IKILE 642 (1084)
Q Consensus 638 i~iwd 642 (1084)
+..|.
T Consensus 293 ~~~~~ 297 (307)
T KOG0316|consen 293 DLFWY 297 (307)
T ss_pred eecee
Confidence 55554
No 51
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=2.3e-32 Score=297.12 Aligned_cols=263 Identities=14% Similarity=0.198 Sum_probs=228.7
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc---------CcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL---------STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
...+.+..|++|+..++.+..|..|++|.+...+..+ .....+.....+.|...+..... + .+|.++
T Consensus 378 ~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~GP 453 (707)
T KOG0263|consen 378 YQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSGP 453 (707)
T ss_pred CCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCCc
Confidence 4568899999999999999999999999997533211 00111112234444444432222 2 259999
Q ss_pred ccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
|....|+|+.++|++++ |+++++|.+.+..++..+++|..+|..+.|+| .|-++|+++.|++.++|......+++.+.
T Consensus 454 Vyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 454 VYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999999999999 79999999999999999999999999999999 89999999999999999999999999999
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEE
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 954 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vw 954 (1084)
||-+.|.|+.|+|+..|+++||.|.+|++||+.+|. .++.+.||.. +|++++|||+|++||+| .|+.|.+|
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~iW 604 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKIW 604 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEEE
Confidence 999999999999999999999999999999999966 5667788887 99999999999999995 88999999
Q ss_pred EcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 955 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|+.+|+.+.+ +.+|.+.|.++.||.||..||+|+.|.+|++||+..-
T Consensus 605 Dl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 605 DLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred EcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 9999999988 5589999999999999999999999999999998754
No 52
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=1.6e-30 Score=246.32 Aligned_cols=292 Identities=16% Similarity=0.236 Sum_probs=236.0
Q ss_pred cccceEEEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+|.+++..++++|. |..|++++.|..|++|+...+.. |. .......+|...|++++|
T Consensus 12 gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s--------------~~--------ck~vld~~hkrsVRsvAw 69 (312)
T KOG0645|consen 12 GHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS--------------WT--------CKTVLDDGHKRSVRSVAW 69 (312)
T ss_pred CCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc--------------EE--------EEEeccccchheeeeeee
Confidence 47889999999999 88899999999999998653110 11 111111259999999999
Q ss_pred cCCCCEEEEEe-CCeEEEEEcC--CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecc
Q 001403 803 SKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG 876 (1084)
Q Consensus 803 s~dg~~l~~~s-dg~i~vwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~ 876 (1084)
+|.|++|++++ |.++.||.-. ..+++.++.+|..+|.+++|++ +|.+||+++.|++|-||.+..+ ++...+++
T Consensus 70 sp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~~ 148 (312)
T KOG0645|consen 70 SPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE 148 (312)
T ss_pred cCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc
Confidence 99999999999 9999999876 4578899999999999999999 9999999999999999999854 57788999
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE 955 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd 955 (1084)
|...|..+.|+|...+|+|+|.|.+|++|+-..+. ...+.+.+.+|.. .|.+++|.+.|..|++ +.|++++||.
T Consensus 149 HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw~ 223 (312)
T KOG0645|consen 149 HTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIWR 223 (312)
T ss_pred ccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEeee
Confidence 99999999999999999999999999999987321 2557788888876 7999999999999998 5789999999
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
..+ .+...|+.++..+.|. ...|++++.|+.|+++.-..+-..-.+... ....+.|+..|. ++.|.|...
T Consensus 224 ~~~-----~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~~~~~aHe~dVN--sV~w~p~~~ 293 (312)
T KOG0645|consen 224 LYT-----DLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-AKKEGAHEVDVN--SVQWNPKVS 293 (312)
T ss_pred ecc-----CcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-Hhhhcccccccc--eEEEcCCCC
Confidence 652 2344578899999998 448999999999999987753221111111 112223455555 688999547
Q ss_pred CEEEEEeCCCcEEEEcCC
Q 001403 1036 TQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~ 1053 (1084)
+.|++|++||.|++|.+.
T Consensus 294 ~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 294 NRLASGGDDGIVNFWELE 311 (312)
T ss_pred CceeecCCCceEEEEEec
Confidence 899999999999999874
No 53
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=1.5e-32 Score=280.74 Aligned_cols=296 Identities=16% Similarity=0.252 Sum_probs=252.3
Q ss_pred CccceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+|...+.++.||+..|+++.|.| .+.+|++++.| +.|+||++-........ +.||..+|..++|+++|
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD---------~~vklW~vy~~~~~lrt--f~gH~k~Vrd~~~s~~g 270 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMD---------GLVKLWNVYDDRRCLRT--FKGHRKPVRDASFNNCG 270 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCC---------ceEEEEEEecCcceehh--hhcchhhhhhhhccccC
Confidence 58889999999999999999999 99999999888 99999999774444433 88999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
..+.+++.|+.|++||+++|+++.. +. ....++|+.|.||+.. .+++|+.|+.|+.||+++|+.++++..|-+.|
T Consensus 271 ~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i 345 (503)
T KOG0282|consen 271 TSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAI 345 (503)
T ss_pred CeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHHHHhhhhhe
Confidence 9999999999999999999987653 22 2346899999999955 78889999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC---
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--- 556 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--- 556 (1084)
..+.|. ++|..+++.+.|+.+++|+.+..-.... .......+.++..+|++.++++-+. ++.|.++.+..
T Consensus 346 ~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~ifs~~~~~r 419 (503)
T KOG0282|consen 346 LDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAIFSTVPPFR 419 (503)
T ss_pred eeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEEEecccccc
Confidence 999995 4778999999999999999987665443 3334456788999999999998775 67788887553
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANE 635 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~d 635 (1084)
......+.+|... +.-..+.|||||.+|++|+.||.+.+||.++-+++..+..+.. .+..+.|+| ....+|+++.+
T Consensus 420 ~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Skvat~~w~ 496 (503)
T KOG0282|consen 420 LNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSKVATCGWD 496 (503)
T ss_pred cCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcceeEecccC
Confidence 2334567777633 3456689999999999999999999999999999999988744 588999999 46689999999
Q ss_pred CeEEEEE
Q 001403 636 NRIKILE 642 (1084)
Q Consensus 636 g~i~iwd 642 (1084)
|.|++|+
T Consensus 497 G~Ikiwd 503 (503)
T KOG0282|consen 497 GLIKIWD 503 (503)
T ss_pred ceeEecC
Confidence 9999996
No 54
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=3.9e-32 Score=271.34 Aligned_cols=279 Identities=16% Similarity=0.224 Sum_probs=242.0
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.|..|.|.|+|+.|++|+..|.+.+|+..+-.
T Consensus 98 ~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fn------------------------------------------------ 129 (464)
T KOG0284|consen 98 PVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFN------------------------------------------------ 129 (464)
T ss_pred ceeeEEEcCCCceeEeecccccEEEecCceee------------------------------------------------
Confidence 58899999999999999999999999863210
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
+..-...|...|.++.++++|.+++++..+|.|++|+.+.+..
T Consensus 130 ----------------------FEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnV--------------- 172 (464)
T KOG0284|consen 130 ----------------------FETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNV--------------- 172 (464)
T ss_pred ----------------------HHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhh---------------
Confidence 0001123888999999999999999999999999997554321
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 854 (1084)
..+ ...|...|++++|||+...+++++ ||+|+|||....+..+.+.+|.-.|.+++|+| ...+||+|
T Consensus 173 --------k~~---~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP-~kgLiasg 240 (464)
T KOG0284|consen 173 --------KII---QAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHP-TKGLIASG 240 (464)
T ss_pred --------HHh---hHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCC-ccceeEEc
Confidence 110 113568999999999999999998 69999999999999999999999999999999 78899999
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEE
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 934 (1084)
+.|..|++||.++|+++.++.+|...|..+.|+|++++|+|+|.|..++++|+.+ .+-+....+|.. .++++
T Consensus 241 skDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~-----mkEl~~~r~Hkk---dv~~~ 312 (464)
T KOG0284|consen 241 SKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRT-----MKELFTYRGHKK---DVTSL 312 (464)
T ss_pred cCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhH-----hHHHHHhhcchh---hheee
Confidence 9999999999999999999999999999999999999999999999999999996 335666777776 89999
Q ss_pred EEccCCCEEEE--EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 935 QFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 935 ~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+|+|-..-|++ |.||.|..|.+..-+.+..+..+|...|++++|.|=|..|++|+.|.++++|.-
T Consensus 313 ~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 313 TWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred ccccccccceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeecc
Confidence 99997665555 699999999999777788888899999999999999999999999999999964
No 55
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=4.6e-30 Score=279.73 Aligned_cols=287 Identities=25% Similarity=0.396 Sum_probs=254.1
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+++.+|.+.|.+++|+|++++|+++..| +.+++|++.+..... .+.+|...+..+.|+|++++|++++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~---------g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~l~~~~ 70 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGD---------GTIKVWDLETGELLR---TLKGHTGPVRDVAASADGTYLASGS 70 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecC---------cEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCCEEEEEc
Confidence 5678999999999999999999998777 999999998765332 2567889999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.++.|.+||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|.+||+.+++....+..|...+.+++|++
T Consensus 71 ~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 145 (289)
T cd00200 71 SDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP 145 (289)
T ss_pred CCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC
Confidence 99999999999875544 6678998999999999987 788888899999999999999999999999999999966
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
. +.++++++.||.|++||+...+....+..+...+.+++|+|+++.+++++. ++.+.+||+.+++.+..+..+.
T Consensus 146 ~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~~~~~ 219 (289)
T cd00200 146 D--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTLRGHE 219 (289)
T ss_pred c--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecchhhcC
Confidence 4 578888888999999999988888888888889999999999999998875 6669999999998888887776
Q ss_pred cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 568 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
..+.++.|+|++.++++++.||.|++||+.+++....+..+. ..+.+++|+|+++++++++.|+.+++|+
T Consensus 220 ---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 220 ---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred ---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccccC--CcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 789999999998888888889999999999999888887543 3689999999999999999999999996
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.98 E-value=2e-30 Score=294.46 Aligned_cols=290 Identities=21% Similarity=0.314 Sum_probs=253.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC-C
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-V 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~-~ 465 (1084)
|...|.++.|||||+++++++.++.+++|++.+++. .....+.+|...|.+++|+||++ ++++++.|++|+|||+ .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22335689999999999999999 8999999999999999 5
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
.+..++++++|...|++++|++ +++++++|+.|++|++||+++++....+..|...|.+++|+++++.|++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 6689999999999999999965 5589999999999999999999999999999999999999999999999965
Q ss_pred CeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC-CCcceEEE
Q 001403 546 ESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICF 622 (1084)
Q Consensus 546 ~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~ 622 (1084)
++.|++||+.++. +...+.++.... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~ 387 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTL 387 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccc
Confidence 7789999999999 567787777333 6999999999999999999999999999999999988877653 13445556
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeecccc-ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec--cc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 699 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 699 (1084)
++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++| ...++++++ .|
T Consensus 388 ~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~----------------------~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 388 STGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHP----------------------TENLIASSSFEGD 445 (456)
T ss_pred cCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCC----------------------CcCeeeecCcCCC
Confidence 789999999999999999999999999999999 77777777764 455566666 67
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 888888754
No 57
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=1.3e-31 Score=261.23 Aligned_cols=277 Identities=21% Similarity=0.317 Sum_probs=232.9
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
..+.|.|+++ |...+++|+.| .+|+|||.++...... +.||++.|.|+.|. .+.|++|+.|.+|
T Consensus 196 ~skgVYClQY--DD~kiVSGlrD---------nTikiWD~n~~~c~~~---L~GHtGSVLCLqyd--~rviisGSSDsTv 259 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRD---------NTIKIWDKNSLECLKI---LTGHTGSVLCLQYD--ERVIVSGSSDSTV 259 (499)
T ss_pred cCCceEEEEe--cchhhhccccc---------CceEEeccccHHHHHh---hhcCCCcEEeeecc--ceEEEecCCCceE
Confidence 4568999988 55678999988 9999999987655443 88999999999996 5699999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEEeecccC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v~~~~~~~~~ 489 (1084)
+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.+|.|||+.+... .+.+.||...|+.+.|
T Consensus 260 rvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdf---- 328 (499)
T KOG0281|consen 260 RVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF---- 328 (499)
T ss_pred EEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecc----
Confidence 999999998887 67799999999999843 799999999999999987653 3567899999999988
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
+.+++++++.|.+|++|+..+.+....+.+|...|.|+.+ .|+++++|+. +.+|++||+..|.+++.++||.
T Consensus 329 d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLRvLeGHE-- 400 (499)
T KOG0281|consen 329 DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRVLEGHE-- 400 (499)
T ss_pred ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHHHHhchH--
Confidence 4479999999999999999999999999999999888775 5788888876 7789999999999999999999
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-------cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-------DAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-------~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
.-|.++.|. .+.+++|+.||+|+|||+..+..-... ..-.+...|..+.| |...+++.+.|.+|.|||
T Consensus 401 -eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHddtILiWd 475 (499)
T KOG0281|consen 401 -ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDDTILIWD 475 (499)
T ss_pred -Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCCeEEEEE
Confidence 889999994 679999999999999999876432111 11122334666666 466789999999999999
Q ss_pred cCCCCee
Q 001403 643 TPESNSV 649 (1084)
Q Consensus 643 ~~~~~~~ 649 (1084)
..++.+-
T Consensus 476 Fl~~~~~ 482 (499)
T KOG0281|consen 476 FLNGPPS 482 (499)
T ss_pred cCCCCcc
Confidence 9877443
No 58
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4.6e-30 Score=237.65 Aligned_cols=271 Identities=20% Similarity=0.304 Sum_probs=239.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++..|.++|.++.|+-||+|.++++.|.+|++|+...|.+++ ++.+|...|..++.+.|+. -+++|+.|+.|.+|
T Consensus 12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW 86 (307)
T ss_pred eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence 467799999999999999999999999999999999998777 7889999999999999998 69999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
|+.+|+.++++.+|.+.|+.+.| +++...+++|+.|..+++||.++.. ++..+......|.++..+ +..+++++
T Consensus 87 DV~TGkv~Rr~rgH~aqVNtV~f--NeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS 162 (307)
T KOG0316|consen 87 DVNTGKVDRRFRGHLAQVNTVRF--NEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS 162 (307)
T ss_pred EcccCeeeeecccccceeeEEEe--cCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence 99999999999999999999999 5567899999999999999998654 455666666678777764 56788877
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
. +++++.||++.|+....+-+ .+|++++|+++++..++++-|+++++.|-.+|++++.+.+|.....-..+
T Consensus 163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 6 77799999999998777766 45999999999999999999999999999999999999988776555567
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc-eeEEEEcCCCcee
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPISTVT 671 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~~p~~~~~ 671 (1084)
+++.....+++|+.||.+.+||+.....+..+..+... +..+.+.|....+
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f 285 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDF 285 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccce
Confidence 88888889999999999999999999999888888777 7788888765443
No 59
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=3.8e-29 Score=262.01 Aligned_cols=624 Identities=17% Similarity=0.181 Sum_probs=354.1
Q ss_pred cceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCc-cccc--eeeeecCCCCCeEEEEEcCC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-SMLF--KTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~-~~~~--~~~~~~~h~~~V~~v~fspd 399 (1084)
...+..|.+|++.|+.+.||| +..+||+++.| ..|+||.+..+ .+.+ ....+.+..-.|.|+.|+|.
T Consensus 69 ~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D---------~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpT 139 (1012)
T KOG1445|consen 69 TRDIGILAAHGDQVTDLGFSPFADELLATCSRD---------EPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPT 139 (1012)
T ss_pred ccccceeecccceeeccCccccchhhhhcccCC---------CeeEEEecCCCcccccCCcceeecCCceEEEEeecccC
Confidence 345677899999999999999 66788999888 99999999732 2222 22234555668999999997
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEeccCCC
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGA 478 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~~h~~ 478 (1084)
..-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ ++++.+.|+.|+|||.+ .++.++..++|.+
T Consensus 140 aDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~ 214 (1012)
T KOG1445|consen 140 ADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGG 214 (1012)
T ss_pred cCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCcccccccccc
Confidence 7767777788999999999986555 7889999999999999999 89999999999999987 5678888898876
Q ss_pred cE-EEEeecccCCCcEEEEEecC----CeEEEEECCCCCc-eEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 479 PV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v-~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
.- ..+.| -++-..|++.+.+ ..|++||...... ...++.. ...|.---|.||.++|+.++ .|+..++.
T Consensus 215 ~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~l~~ 289 (1012)
T KOG1445|consen 215 MRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNKLFM 289 (1012)
T ss_pred chhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcceEEE
Confidence 42 23445 3343467766655 4589999876443 2333222 23566667899999998876 35777888
Q ss_pred ecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEEEC---------------------------------------
Q 001403 552 WNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGD--------------------------------------- 590 (1084)
Q Consensus 552 wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~--------------------------------------- 590 (1084)
+.+...+.... +...- .......++-|....-+..++
T Consensus 290 lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~ 367 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAE 367 (1012)
T ss_pred EEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCc
Confidence 87765443110 10000 000011111111100000000
Q ss_pred CCc-EEEEECCCCeEEEEEcC------CCCCC----------------CcceEEEec--------------C-CCEEEEE
Q 001403 591 DHV-IKIWDMNKVQLLTTIDA------GGGLP----------------ENPRICFNK--------------N-GTLLAVI 632 (1084)
Q Consensus 591 dg~-i~iwd~~~~~~~~~~~~------~~~~~----------------~v~~v~~s~--------------~-~~~l~~~ 632 (1084)
-+. ---|=-.+.+.++.... |+..+ .|......| | ...-++.
T Consensus 368 p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~ 447 (1012)
T KOG1445|consen 368 PGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVP 447 (1012)
T ss_pred cCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcC
Confidence 000 00011111111111110 00000 000000000 0 0000000
Q ss_pred ECCCeEEEEEcC-----CC-----CeeeeccccccceeEEE------EcCCCcee--------eeeccCce-------eE
Q 001403 633 ANENRIKILETP-----ES-----NSVDAAGVLSDNLRKLS------VNPISTVT--------GAGIANGS-------VS 681 (1084)
Q Consensus 633 ~~dg~i~iwd~~-----~~-----~~~~~~~~~~~~i~~~~------~~p~~~~~--------~~~~~~~~-------~~ 681 (1084)
....++-.+.. .+ ......++....+..+. .-|....+ .++...+. ..
T Consensus 448 -~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~ 526 (1012)
T KOG1445|consen 448 -KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVN 526 (1012)
T ss_pred -cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcc
Confidence 00001110000 00 00000001111110000 00000000 00000000 00
Q ss_pred ecCCCCCCCCccceeccc------CccccccceeecCcc---------ceeeccCCccccceEEEEEEecCCCeEE--Ee
Q 001403 682 VNEDPKEDVKPEISVEAE------NKSEVEKPLFARPSE---------CQSLLLPSKVKANKISRLTYNNGGQAIF--AL 744 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d------~~i~~w~~~~~~~~~---------~~~~~~~~~~~~~~i~~l~~s~~g~~l~--~~ 744 (1084)
+....+.......+.+-. |.+.-|.-..+.... .....+| +.-. .|..+.++++ ..
T Consensus 527 ~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~P-----gEsn--Gfcan~~rvAVPL~ 599 (1012)
T KOG1445|consen 527 FGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLP-----GESN--GFCANNKRVAVPLA 599 (1012)
T ss_pred cCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCC-----CccC--ceeeccceEEEEec
Confidence 000000000000000000 001001100000000 0000011 1111 1233334333 34
Q ss_pred ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CCCEEEEEe-CCeEEEEEc
Q 001403 745 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV 822 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~s-dg~i~vwd~ 822 (1084)
+..|.|-||++......++|.... .-+...|+.+.|.| |.+.||++. ||.|++|.+
T Consensus 600 g~gG~iai~el~~PGrLPDgv~p~----------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~ 657 (1012)
T KOG1445|consen 600 GSGGVIAIYELNEPGRLPDGVMPG----------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL 657 (1012)
T ss_pred CCCceEEEEEcCCCCCCCcccccc----------------------cccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence 557899999988776655555432 12567789999998 667788877 699999999
Q ss_pred CCc-------eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 823 MTF-------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 823 ~~~-------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
..+ +....+..|...|+++.|+|--..+|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+++|+
T Consensus 658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At 737 (1012)
T KOG1445|consen 658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT 737 (1012)
T ss_pred ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence 754 3345677899999999999977789999999999999999999999999999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E----eCCeEEEEEcCCcc--eeeEeecC
Q 001403 896 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V----HETHLAIYEAEELT--CLKQWFPI 968 (1084)
Q Consensus 896 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~----~d~~i~vwd~~~~~--~~~~~~~~ 968 (1084)
.+.||+|++|+-.+++. .+....+. ...+-..+.|.-||+++++ | ++..|.+||..+.. .+......
T Consensus 738 VcKDg~~rVy~Prs~e~----pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD 811 (1012)
T KOG1445|consen 738 VCKDGTLRVYEPRSREQ----PVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD 811 (1012)
T ss_pred eecCceEEEeCCCCCCC----ccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence 99999999999988652 22222222 2235568899999999988 5 44579999987543 22221110
Q ss_pred CCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001403 969 SSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 969 h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
-.-.+.--.+.+|. .++++|-.|..|.+|.+-....
T Consensus 812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ccCccccccccCCCceEEEecCCCceEEEEEecCCCc
Confidence 01111111233444 4567888899999999776543
No 60
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=2.4e-31 Score=259.35 Aligned_cols=277 Identities=16% Similarity=0.254 Sum_probs=236.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
....|.|+.+. ...+++|..|++|+|||.++-++++ .+.||++.|.|+.|. .+ ++++|+.|.+|+|||+++
T Consensus 196 ~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t 266 (499)
T KOG0281|consen 196 NSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT 266 (499)
T ss_pred cCCceEEEEec--chhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence 44689999885 6689999999999999999987776 788999999999995 45 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
|+++.++-+|...|..+.|+ + .++++++.|.++.+||+.+... ...+.+|...|..+.|+. +++++++.
T Consensus 267 ge~l~tlihHceaVLhlrf~--n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg-- 338 (499)
T KOG0281|consen 267 GEPLNTLIHHCEAVLHLRFS--N--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG-- 338 (499)
T ss_pred CchhhHHhhhcceeEEEEEe--C--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence 99999999999999999993 2 5999999999999999987663 335678888899888864 58888875
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
+.+|++|+..+++.++++.+|. ..|.|+.+ .++++++|+.|.+|++||+..|.++..+++|.. -|.++.|.
T Consensus 339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd 409 (499)
T KOG0281|consen 339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD 409 (499)
T ss_pred --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence 7789999999999999999999 77877766 578999999999999999999999999998866 48899986
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCC---------eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.+.+++|..||+|++||+..+. ++..+..|.+.|..++|. ...++
T Consensus 410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv 463 (499)
T KOG0281|consen 410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII 463 (499)
T ss_pred --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence 6789999999999999998763 334455677777777664 56789
Q ss_pred eecccCccccccceeecCccc
Q 001403 695 SVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
+++.|.+|.+||+..+.+...
T Consensus 464 sssHddtILiWdFl~~~~~~~ 484 (499)
T KOG0281|consen 464 SSSHDDTILIWDFLNGPPSAA 484 (499)
T ss_pred eccCCCeEEEEEcCCCCcccc
Confidence 999999999999876555433
No 61
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=7.8e-29 Score=304.48 Aligned_cols=289 Identities=13% Similarity=0.180 Sum_probs=238.6
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc----c-cceeeeecCCCCCeEEEEEcC-CCCEE
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS----M-LFKTALVRDPGVSVNRVVWSP-DGSLL 403 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~----~-~~~~~~~~~h~~~V~~v~fsp-dg~~l 403 (1084)
+..|.+.|.+++|+|||++||+|+.| +.|+||+..... . ......+. +...|.+++|+| ++.+|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D---------~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~l 548 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVN---------KKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQV 548 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCC---------CEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEE
Confidence 45689999999999999999999888 999999986421 0 01111122 346899999987 58899
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++||+.++..+..+..+ ..|.+
T Consensus 549 as~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~ 622 (793)
T PLN00181 549 ASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANICC 622 (793)
T ss_pred EEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEE
Confidence 999999999999999886554 6789999999999997 667 8999999999999999999999888755 67888
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-----
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----- 556 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----- 556 (1084)
+.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++..+++++. ++.|++||+..
T Consensus 623 v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~~~ 696 (793)
T PLN00181 623 VQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSISGI 696 (793)
T ss_pred EEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcccc
Confidence 88853 467899999999999999998765 455677888899999997 7888988875 67799999974
Q ss_pred -ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC-----------CCCCCCcceEEEec
Q 001403 557 -GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRICFNK 624 (1084)
Q Consensus 557 -~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~ 624 (1084)
...+..+.+|. ..+..++|+|++.+|++|+.|+.|++|+......+..+.. ..+...|.+++|+|
T Consensus 697 ~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 697 NETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred CCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 35677888887 7889999999999999999999999999876654433211 12223589999999
Q ss_pred CCCEEEEEECCCeEEEEEc
Q 001403 625 NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~ 643 (1084)
++..|++++.+|.|+||++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
No 62
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=6.7e-31 Score=268.75 Aligned_cols=290 Identities=15% Similarity=0.193 Sum_probs=252.1
Q ss_pred eecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
.+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +.+++ ++.+|..+|.+++|+.+|. .++|++.|+.|+
T Consensus 209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK 283 (503)
T KOG0282|consen 209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK 283 (503)
T ss_pred eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence 4789999999999999 999999999999999999987 66666 7889999999999999999 799999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+||+++|+++.++. ....++++.|+|++ .+.+++|+.|+.|+.||+++++...++..|-+.|..+.|-++|+++++.+
T Consensus 284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 99999999999886 45567899998865 47999999999999999999999999999999999999999999999988
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEcCCCCCCCc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTIDAGGGLPEN 617 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v 617 (1084)
. +..+++|+...+-.+.....+. .....++..+|+++++++-+.|+.|.++.+... ...+.+.+|.....-
T Consensus 362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys 435 (503)
T KOG0282|consen 362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS 435 (503)
T ss_pred c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence 5 5679999998877665554433 245778999999999999999999999986542 223445555444445
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
..+.|||||.+|++|+.||.+.+||..+.+.+..++.|.+.+..+.|.|.. ...+++++
T Consensus 436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e---------------------~Skvat~~ 494 (503)
T KOG0282|consen 436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVE---------------------PSKVATCG 494 (503)
T ss_pred eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCC---------------------cceeEecc
Confidence 679999999999999999999999999999999999999999999999753 34588999
Q ss_pred ccCcccccc
Q 001403 698 AENKSEVEK 706 (1084)
Q Consensus 698 ~d~~i~~w~ 706 (1084)
.+|.|++|+
T Consensus 495 w~G~Ikiwd 503 (503)
T KOG0282|consen 495 WDGLIKIWD 503 (503)
T ss_pred cCceeEecC
Confidence 999999996
No 63
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.97 E-value=3.2e-28 Score=255.18 Aligned_cols=666 Identities=15% Similarity=0.148 Sum_probs=363.2
Q ss_pred ceEEEEEcCCcc-ccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcccc---ceeeeecccccEeEE
Q 001403 365 RNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDL 439 (1084)
Q Consensus 365 ~~v~iwd~~~~~-~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~---~~~~l~~h~~~V~~l 439 (1084)
+.+-|--+..+. ......++.+|.+.|+.+.||| +..+||+|+.|..|+||.+..|-... .-..+.+..-.|.++
T Consensus 55 ~~lgvlPl~~~Gr~~r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l 134 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGRRTRDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECL 134 (1012)
T ss_pred ceEEEEeccccCccccccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEe
Confidence 344555554332 2334456889999999999999 67799999999999999998443211 111233444578999
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeec
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYD 518 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~ 518 (1084)
.|+|.... +++++ ..|+++|||+.+++.+..+.+|.+.|.++.| +.||.+|++.+.|+.|+|||.+.... +...+
T Consensus 135 ~fHpTaDg-il~s~-a~g~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te 210 (1012)
T KOG1445|consen 135 RFHPTADG-ILASG-AHGSVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTE 210 (1012)
T ss_pred ecccCcCc-eEEec-cCceEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCcccccc
Confidence 99998775 45554 4899999999999999999999999999999 67899999999999999999987544 44445
Q ss_pred CCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEE
Q 001403 519 APGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIK 595 (1084)
Q Consensus 519 ~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~ 595 (1084)
.|++ .-..+.|..+-.+|++.+.+......|++||.+. +..+.++.... ...+.---|.||.+.++.+ -.+.+++
T Consensus 211 ~H~~~rdsRv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~ 288 (1012)
T KOG1445|consen 211 GHGGMRDSRVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLF 288 (1012)
T ss_pred ccccchhheeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEE
Confidence 5544 3345677777667887777655567799999875 33444444332 2345556788998877654 4678888
Q ss_pred EEECCCCeEEE--EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC---------------------------C
Q 001403 596 IWDMNKVQLLT--TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE---------------------------S 646 (1084)
Q Consensus 596 iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~---------------------------~ 646 (1084)
.+.+...+..- .++.... ......+.-|...+-+..+. ..+++.+.. +
T Consensus 289 ~lE~~d~qPyLs~v~~~tle-~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G 365 (1012)
T KOG1445|consen 289 MLEMQDRQPYLSHVFELTLE-EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRG 365 (1012)
T ss_pred EEEecCCCcchhhhhhhcch-hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccC
Confidence 88876544321 1110000 00011111111100000000 000000000 0
Q ss_pred C-----eeeeccccccceeEEEEcCCCcee--------------eee-------------ccCceeEecCCCCCCCCccc
Q 001403 647 N-----SVDAAGVLSDNLRKLSVNPISTVT--------------GAG-------------IANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 647 ~-----~~~~~~~~~~~i~~~~~~p~~~~~--------------~~~-------------~~~~~~~~~~~~s~~~~~l~ 694 (1084)
. .-.-+.+....+..+.+.|....- ..+ .....-. .++..|+-..--
T Consensus 366 ~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~-~~~~~Pd~~~qp 444 (1012)
T KOG1445|consen 366 AEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNS-SSNNVPDVQEQP 444 (1012)
T ss_pred CccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccc-cccCCCccccCC
Confidence 0 000000111111111111100000 000 0000000 000011100000
Q ss_pred eecccCccccccceeecCccceeeccCC----ccccceEEEEE------EecCCCeEEEeecCCceEEe------eccC-
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPS----KVKANKISRLT------YNNGGQAIFALASNGVHLMW------RWPR- 757 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~----~~~~~~i~~l~------~s~~g~~l~~~~~dg~i~vw------~~~~- 757 (1084)
+......+|-.+....+..........+ .+..+++..+. .-|...- ++ .+-.+..+. ..+.
T Consensus 445 aV~~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~p-lt-~~~s~~s~~~P~~~ksvPe~ 522 (1012)
T KOG1445|consen 445 AVPKKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTP-LT-DSVSTPSVVGPAFGKSVPEQ 522 (1012)
T ss_pred CcCcchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcc-cc-cccccccccCccccccCCCC
Confidence 0000011111110000000000000000 00000000000 0000000 00 000000000 0000
Q ss_pred --Ccc----CcCccccee----------cCCeeecCCCCCcc----ccccCcCCCCCCCccEEEecCCCCEEEEE---eC
Q 001403 758 --NDL----TLSTEATTK----------VPPRLYQPRHGPQF----MVNDTTDSNSQEAVPCFALSKNDAYLFSA---SG 814 (1084)
Q Consensus 758 --~~~----~~~~~~~~~----------~~~~~~~~~~~~~~----~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---sd 814 (1084)
..+ +........ +.+.-|.-..|... ....+...+..-+-.+=-|..+.+++|+- +.
T Consensus 523 ~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~g 602 (1012)
T KOG1445|consen 523 PPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSG 602 (1012)
T ss_pred CCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCC
Confidence 000 000000000 00111111111100 00001110111112222345566677653 47
Q ss_pred CeEEEEEcCC-ceeEEE-EcC--CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-------eeeeeecccccCEEE
Q 001403 815 GVISLYIVMT-FKTILT-IMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKLEGHSKRVTG 883 (1084)
Q Consensus 815 g~i~vwd~~~-~~~~~~-~~~--~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-------~~~~~l~~h~~~V~~ 883 (1084)
|.|.||++.. |+.... +.+ ....|+.+.|.|.|...||++++||.|++|.+..+ .....+.+|...|++
T Consensus 603 G~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~s 682 (1012)
T KOG1445|consen 603 GVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITS 682 (1012)
T ss_pred ceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEE
Confidence 8999999974 332211 111 34579999999999999999999999999999764 345678899999999
Q ss_pred EEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcce
Q 001403 884 LVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC 961 (1084)
Q Consensus 884 l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~ 961 (1084)
+.|+| -...|++++.|.+|++||+.++. ....+.+|.. .|..++|||||+.+|+ +.||+|++|+..+++.
T Consensus 683 lRfHPLAadvLa~asyd~Ti~lWDl~~~~-----~~~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~ 754 (1012)
T KOG1445|consen 683 LRFHPLAADVLAVASYDSTIELWDLANAK-----LYSRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQ 754 (1012)
T ss_pred EEecchhhhHhhhhhccceeeeeehhhhh-----hhheeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCC
Confidence 99998 45789999999999999999854 3445667776 8999999999999999 7999999999987765
Q ss_pred eeEeecC-CCCCEEEEEEccCCCEEEEEeCCC----cEEEEEcCCCcee--EEeccccccCCCCcccceeeeEEEECCCC
Q 001403 962 LKQWFPI-SSVPISQATFSCDCRMVFTSFVDG----TLSIHEASNLEVQ--CRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 962 ~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg----~i~vwd~~~~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
...--.+ -..+-..+.|.-||+++++.+-|. .|.+||.++.... ..... ...+ .++-=.++++.
T Consensus 755 pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l--Dvap-------s~LvP~YD~Ds 825 (1012)
T KOG1445|consen 755 PVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL--DVAP-------SPLVPHYDYDS 825 (1012)
T ss_pred ccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee--cccC-------ccccccccCCC
Confidence 4321111 134556788999999999888764 5888988876432 11110 0000 01111366655
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
+..|++|-.|..|..|++..+.+-.
T Consensus 826 ~~lfltGKGD~~v~~yEv~~esPy~ 850 (1012)
T KOG1445|consen 826 NVLFLTGKGDRFVNMYEVIYESPYL 850 (1012)
T ss_pred ceEEEecCCCceEEEEEecCCCcee
Confidence 7789999999999999998776543
No 64
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.3e-28 Score=268.28 Aligned_cols=285 Identities=23% Similarity=0.343 Sum_probs=253.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|..+|.+++|+|++++|++++.+|.|.+|++.+++... .+..|...+..+.|+|+++ .+++++.|+.|++||
T Consensus 5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~ 79 (289)
T cd00200 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD 79 (289)
T ss_pred hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence 56799999999999999999999999999999999876443 6778999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++.+..+..|...+.++.|.+. +.++++++.+|.+.+||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-- 155 (289)
T cd00200 80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ-- 155 (289)
T ss_pred cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence 9998889999999999999999654 578888888999999999988877788878889999999999998888763
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|.+||+.+++.+..+..+. ..+.++.|+|+++.+++++.++.|++||+.+++.+..+..+.. .+.+++|+
T Consensus 156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~--~i~~~~~~ 228 (289)
T cd00200 156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHEN--GVNSVAFS 228 (289)
T ss_pred --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCC--ceEEEEEc
Confidence 5669999999998888888776 7899999999999999999999999999999888888754433 58999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
|++.++++++.++.+++|+..+++....+..+...+.++.++ +++..+++++.|+.++
T Consensus 229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~ 286 (289)
T cd00200 229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR 286 (289)
T ss_pred CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence 998888888889999999999988888888888889988887 5677889999999999
Q ss_pred ccc
Q 001403 704 VEK 706 (1084)
Q Consensus 704 ~w~ 706 (1084)
+|+
T Consensus 287 iw~ 289 (289)
T cd00200 287 IWD 289 (289)
T ss_pred ecC
Confidence 986
No 65
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=5.7e-28 Score=296.84 Aligned_cols=320 Identities=14% Similarity=0.184 Sum_probs=247.1
Q ss_pred ceEEEEEcCCccccce--eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC----cccc-ceeeeecccccEe
Q 001403 365 RNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDAR-QQLEIDAHVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~--~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~----~~~~-~~~~l~~h~~~V~ 437 (1084)
|.+++|+..+...... ..-+..|...|.+++|+|+|++||+|+.|+.|+|||..+. .... ....+. +...|.
T Consensus 458 gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~ 536 (793)
T PLN00181 458 GLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLS 536 (793)
T ss_pred hhhhhhcccceEEEEeeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCcee
Confidence 6778888876443221 1124458999999999999999999999999999998642 1111 111233 346799
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
+++|++.... +|++++.|++|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||.|++||+.+......+
T Consensus 537 ~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~ 614 (793)
T PLN00181 537 GICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGSVKLWSINQGVSIGTI 614 (793)
T ss_pred eEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCEEEEEECCCCcEEEEE
Confidence 9999886433 7999999999999999999999999999999999999753 5679999999999999999988777666
Q ss_pred cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEE
Q 001403 518 DAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 595 (1084)
Q Consensus 518 ~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~ 595 (1084)
..+ ..+.++.|+ ++|.++++++. ++.|++||+++++ .+..+.+|. ..|.++.|. ++..+++++.|++|+
T Consensus 615 ~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 615 KTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred ecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-CCCEEEEEECCCEEE
Confidence 644 578899995 57999999875 6779999998765 456677777 889999997 678999999999999
Q ss_pred EEECCCC------eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCc
Q 001403 596 IWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 596 iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
+||+..+ ..+..+..+.. .+..++|+|++.+|++|+.|+.|++|+......+.........
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~--~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~----------- 752 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTN--VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTID----------- 752 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCC--CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCC-----------
Confidence 9999743 56677766543 5788999999999999999999999997755332211100000
Q ss_pred eeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCc
Q 001403 670 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV 749 (1084)
Q Consensus 670 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~ 749 (1084)
.. .. .....+...|.+++|++++..+++++.+|.
T Consensus 753 -----------------------~~---------------------~~--~~~~~~~~~V~~v~ws~~~~~lva~~~dG~ 786 (793)
T PLN00181 753 -----------------------PV---------------------SG--LEVDDASQFISSVCWRGQSSTLVAANSTGN 786 (793)
T ss_pred -----------------------cc---------------------cc--cccCCCCcEEEEEEEcCCCCeEEEecCCCc
Confidence 00 00 000124567999999999999999999999
Q ss_pred eEEeec
Q 001403 750 HLMWRW 755 (1084)
Q Consensus 750 i~vw~~ 755 (1084)
|++|++
T Consensus 787 I~i~~~ 792 (793)
T PLN00181 787 IKILEM 792 (793)
T ss_pred EEEEec
Confidence 999985
No 66
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=5.6e-30 Score=239.03 Aligned_cols=290 Identities=16% Similarity=0.190 Sum_probs=246.2
Q ss_pred eecccCCCCceEEEEcC---CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 328 QTLIEGSSSPMSMDFHP---VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~sp---dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
.+-+||+.+|..++||| ||-+|++++.| +.--+-+-+++...- .+.||++.|+...+..+..+-|
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g~flisa~kd---------~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~~aa 75 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDGYFLISASKD---------GKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNATRAA 75 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCceEEEEeccC---------CCchhccCCCCCcEE---eeeccCcceeeeecCchhhhhh
Confidence 45689999999999986 99999999888 222222223333322 3789999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCCcEEEE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSL 483 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~~~h~~~v~~~ 483 (1084)
+++.|-+.+|||.-+|..+. .+ .|..-|.+++|+.|.. +|++|+.++.++|+|++..+ +..++.+|.+.|..+
T Consensus 76 saaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v 149 (334)
T KOG0278|consen 76 SAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTV 149 (334)
T ss_pred hhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcCCCCcceeE
Confidence 99999999999999998766 33 6888999999999999 79999999999999998654 567899999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.|... .+.+++.+.|++||+||..++.....+... .++.++.+++||++|.++. .+.|..||..+-..+..+
T Consensus 150 ~wc~e--D~~iLSSadd~tVRLWD~rTgt~v~sL~~~-s~VtSlEvs~dG~ilTia~-----gssV~Fwdaksf~~lKs~ 221 (334)
T KOG0278|consen 150 LWCHE--DKCILSSADDKTVRLWDHRTGTEVQSLEFN-SPVTSLEVSQDGRILTIAY-----GSSVKFWDAKSFGLLKSY 221 (334)
T ss_pred EEecc--CceEEeeccCCceEEEEeccCcEEEEEecC-CCCcceeeccCCCEEEEec-----CceeEEeccccccceeec
Confidence 99653 368888899999999999999888777654 4789999999999998875 345999999999988888
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
.... .|.+...+|+...+++|++|+.++.||..+|+.+..+. .++..+|.|+.|+|||...++|+.||+|++|.+
T Consensus 222 k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n-kgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt 296 (334)
T KOG0278|consen 222 KMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN-KGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT 296 (334)
T ss_pred cCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecc-cCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence 7655 78999999999999999999999999999999988862 234457999999999999999999999999998
Q ss_pred CCCCe
Q 001403 644 PESNS 648 (1084)
Q Consensus 644 ~~~~~ 648 (1084)
..++.
T Consensus 297 ~~~~~ 301 (334)
T KOG0278|consen 297 TPGKT 301 (334)
T ss_pred cCCCc
Confidence 76643
No 67
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.97 E-value=2e-28 Score=235.69 Aligned_cols=303 Identities=17% Similarity=0.213 Sum_probs=243.4
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC------cc---------ccceeeeecCC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA------CS---------MLFKTALVRDP 387 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~------~~---------~~~~~~~~~~h 387 (1084)
+.-....|..|...+.+.+|||||.++|+|+.| ..|+|.|++. .. .......+-+|
T Consensus 101 ~~yEt~ylt~HK~~cR~aafs~DG~lvATGsaD---------~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH 171 (430)
T KOG0640|consen 101 SEYETKYLTSHKSPCRAAAFSPDGSLVATGSAD---------ASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDH 171 (430)
T ss_pred cccceEEEeecccceeeeeeCCCCcEEEccCCc---------ceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhc
Confidence 344556789999999999999999999999988 9999999972 11 10112246789
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
.++|+++.|+|....|++|+.|++|+++|.......+..+.+ ....+|.++.|.|.|. +++.|....++++||+++-
T Consensus 172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~ 248 (430)
T KOG0640|consen 172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTY 248 (430)
T ss_pred cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccce
Confidence 999999999999999999999999999999765443333222 3456899999999999 8899998999999999998
Q ss_pred ceeeEe---ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CC-CCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 SRTYSF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~~~~~~---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
++...- ..|.+.|+++.++ +.+.+.++++.||.|++||--+.++...+. .| +..|.+..|..+|+++++.+.
T Consensus 249 QcfvsanPd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~- 325 (430)
T KOG0640|consen 249 QCFVSANPDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK- 325 (430)
T ss_pred eEeeecCcccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC-
Confidence 886544 4699999999994 467899999999999999988777766553 33 447999999999999999876
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccC--ceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+..+++|.+.+++.+..+.|....+. .-+...|+....+++.-. ..+.++-||.+++..+..+.. ++...+..
T Consensus 326 ---DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~ 401 (430)
T KOG0640|consen 326 ---DSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRW 401 (430)
T ss_pred ---cceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceE
Confidence 77899999999999999987631111 123455777777777744 457899999999887776654 34456899
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcC
Q 001403 620 ICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+.-+|.+.-+++++.|..+|+|--.
T Consensus 402 i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 402 IVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred EEeCCCCCceeeecccceeeeeeec
Confidence 9999999999999999999999643
No 68
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.97 E-value=1.9e-29 Score=243.71 Aligned_cols=289 Identities=16% Similarity=0.206 Sum_probs=250.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccc-----eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~-----~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
|.+.-+.|..|||||+||++|+.||-|.+||..+|+..+- ...+--+..+|.|+.||.|.. ++++|+.||.|+
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK 288 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK 288 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence 4567788999999999999999999999999999975331 123445778999999999999 899999999999
Q ss_pred EEECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 461 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 461 vwd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
||.+++|.|++.|. .|...|+++.| +.|+..+++++.|.++++--+.+++...++.+|..-|....|++||..++++
T Consensus 289 vWri~tG~ClRrFdrAHtkGvt~l~F--SrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa 366 (508)
T KOG0275|consen 289 VWRIETGQCLRRFDRAHTKGVTCLSF--SRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA 366 (508)
T ss_pred EEEEecchHHHHhhhhhccCeeEEEE--ccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence 99999999999996 89999999999 4567899999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCc
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 617 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 617 (1084)
+. +++|.+|+..+.+++.+|+... ...+|..+-.-|. ..+++++...++++|.++. |+.++.+... ......
T Consensus 367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF 440 (508)
T KOG0275|consen 367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF 440 (508)
T ss_pred cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence 87 7779999999999999887654 3467777777665 4688889999999999984 6777777543 222346
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
.+.+.+|.|.++.+.+.|+.++.+...+++.-..+..|...+..++-. |..+.+++-+
T Consensus 441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs 498 (508)
T KOG0275|consen 441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS 498 (508)
T ss_pred EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence 678899999999999999999999999999999999888888777766 5677889999
Q ss_pred ccCcccccc
Q 001403 698 AENKSEVEK 706 (1084)
Q Consensus 698 ~d~~i~~w~ 706 (1084)
.||.+++|.
T Consensus 499 EDgllKLWk 507 (508)
T KOG0275|consen 499 EDGLLKLWK 507 (508)
T ss_pred ccchhhhcC
Confidence 999999995
No 69
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.97 E-value=1.4e-29 Score=236.49 Aligned_cols=288 Identities=14% Similarity=0.178 Sum_probs=256.4
Q ss_pred ecCCCCCeEEEEEcC---CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fsp---dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
..||+.+|..++||| +|-+|++++.|+.-.+-+-++|.-+. ++.+|.+.|+......+.. ..++++.|-+.+
T Consensus 10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak 84 (334)
T KOG0278|consen 10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK 84 (334)
T ss_pred EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence 678999999999997 89999999999999999999998777 8899999999999988877 689999999999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
|||.-+|..+++|. |...|.+++| +.|.++|++|+.++.+|+||++..+ +..++..+.+.|..+.|....+.+++.
T Consensus 85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS 161 (334)
T KOG0278|consen 85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS 161 (334)
T ss_pred hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence 99999999999997 8999999999 5577899999999999999998765 466788999999999999999999887
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||.+++..++++.... +|.++.++++|.++.++ ..+.|.+||..+-.+++.+..... |.+
T Consensus 162 ad----d~tVRLWD~rTgt~v~sL~~~s----~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~n---V~S 229 (334)
T KOG0278|consen 162 AD----DKTVRLWDHRTGTEVQSLEFNS----PVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCN---VES 229 (334)
T ss_pred cc----CCceEEEEeccCcEEEEEecCC----CCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccc---ccc
Confidence 54 6679999999999999998754 89999999999766554 557899999999999998876654 888
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
...+|+...+++|+.|..++.||..++..+... ++|.++|-|+.|+ |+|...++|+.
T Consensus 230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE 287 (334)
T KOG0278|consen 230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE 287 (334)
T ss_pred ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence 999999999999999999999999999998885 9999999999997 67888899999
Q ss_pred cCccccccceeecCc
Q 001403 699 ENKSEVEKPLFARPS 713 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~ 713 (1084)
||+|++|....+...
T Consensus 288 DGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 288 DGTIRLWQTTPGKTY 302 (334)
T ss_pred CceEEEEEecCCCch
Confidence 999999998754433
No 70
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.97 E-value=2.1e-28 Score=275.85 Aligned_cols=301 Identities=19% Similarity=0.265 Sum_probs=248.0
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc---------ccceeeeecCCCCCeEEEEEcCCCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS---------MLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
..+...|.+++.+|||..+|+|. ...++.++||+.+.-. ..........|.+.|+|+.|||||+
T Consensus 10 ~H~~~~IfSIdv~pdg~~~aTgG-------q~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~ 82 (942)
T KOG0973|consen 10 NHNEKSIFSIDVHPDGVKFATGG-------QVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGS 82 (942)
T ss_pred ccCCeeEEEEEecCCceeEecCC-------ccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCC
Confidence 34456789999999999999974 1123777899975311 1112224567999999999999999
Q ss_pred EEEEEeCCCEEEEEEccC---C------------ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 402 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~---~------------~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
|||+|++|+.|.||+... + +..+....+.+|...|..++|+|++. ++++++.|++|.|||..+
T Consensus 83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t 160 (942)
T KOG0973|consen 83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT 160 (942)
T ss_pred eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence 999999999999999883 1 11234557889999999999999999 999999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------CCeEEEEEEcCCCCEEEEEe
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~ 540 (1084)
.+.+..+++|.+.|..+.| ++-|+++++-+.|++|++|+....+....+..+ ...+..+.|||||++|++..
T Consensus 161 F~~~~vl~~H~s~VKGvs~--DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n 238 (942)
T KOG0973|consen 161 FELLKVLRGHQSLVKGVSW--DPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN 238 (942)
T ss_pred ceeeeeeecccccccceEE--CCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence 9999999999999999999 556799999999999999997765555544333 23578899999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-----CC------------EEEEEECCCcEEEEECCCCe
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KD------------QILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~------------~l~~~~~dg~i~iwd~~~~~ 603 (1084)
.-..+...+.|.+..+.+.-..+-||. .++.+++|+|. .+ .+++|+.|++|-||.....+
T Consensus 239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R 315 (942)
T KOG0973|consen 239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR 315 (942)
T ss_pred hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence 766677889999998888889999999 89999999883 11 56779999999999998888
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
++.....-.. ..|..++|+|||..|.+++.||+|.++.++..
T Consensus 316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 7765543222 35899999999999999999999999998864
No 71
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.97 E-value=2.3e-29 Score=252.20 Aligned_cols=297 Identities=16% Similarity=0.226 Sum_probs=259.0
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 399 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd 399 (1084)
+.+|+.+...+..|.++|..+.|-++...|++|..| ..|++|++...+..+ ...+.|..+.|+.+.|.++
T Consensus 161 ~~lpS~~~~~ld~h~gev~~v~~l~~sdtlatgg~D---------r~Ik~W~v~~~k~~~-~~tLaGs~g~it~~d~d~~ 230 (459)
T KOG0288|consen 161 DTLPSRALFVLDAHEGEVHDVEFLRNSDTLATGGSD---------RIIKLWNVLGEKSEL-ISTLAGSLGNITSIDFDSD 230 (459)
T ss_pred cccchhhhhhhhccccccceeEEccCcchhhhcchh---------hhhhhhhcccchhhh-hhhhhccCCCcceeeecCC
Confidence 678899999999999999999999999999999888 999999997665322 2347788899999999999
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 479 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~ 479 (1084)
++++++++.|+.+++|++...+... +|.+|++.|+++.|..... .+++|+.|.+|++||+..+.|..++- ....
T Consensus 231 ~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~ 304 (459)
T KOG0288|consen 231 NKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCSKTVL-PGSQ 304 (459)
T ss_pred CceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhheecccc-cccc
Confidence 9999999999999999999986555 7889999999999998776 59999999999999999998887764 2334
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
+..|+.. ...+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++. +.++.+.|+++.+.
T Consensus 305 cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~viDlRt~eI 375 (459)
T KOG0288|consen 305 CNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLKVIDLRTKEI 375 (459)
T ss_pred ccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCceeeeecccccE
Confidence 5555542 3578999999999999999998888887776 9999999999999999976 66799999999998
Q ss_pred eeeeecccc-ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 560 KRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 560 ~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
...+..... .....+.+.|||++.++++|+.||.|+||++.++++...+......+.|.+++|+|-|..+++++.++.+
T Consensus 376 ~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v 455 (459)
T KOG0288|consen 376 RQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAV 455 (459)
T ss_pred EEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcce
Confidence 888765431 1234888999999999999999999999999999999999887766679999999999999999999999
Q ss_pred EEE
Q 001403 639 KIL 641 (1084)
Q Consensus 639 ~iw 641 (1084)
.+|
T Consensus 456 ~lW 458 (459)
T KOG0288|consen 456 TLW 458 (459)
T ss_pred Eec
Confidence 998
No 72
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=8.1e-28 Score=226.66 Aligned_cols=279 Identities=18% Similarity=0.276 Sum_probs=242.0
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVA 406 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~ 406 (1084)
+.+.+|...|.+|+|+-||.+||+|+.| +++.||++........ ....+|.+.|..++|+| ....++++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~d---------ktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d~~ata 83 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFD---------KTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPDLFATA 83 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccC---------CceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCcceEEe
Confidence 5567899999999999999999999998 9999999988744433 34788999999999998 67899999
Q ss_pred eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
+.|.+|++||...+++... .....+.+ .+.|+|+|+ +++.++.|..|.+.|.++-+...+.+ ....+..++|+
T Consensus 84 s~dk~ir~wd~r~~k~~~~---i~~~~eni-~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~ 156 (313)
T KOG1407|consen 84 SGDKTIRIWDIRSGKCTAR---IETKGENI-NITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWN 156 (313)
T ss_pred cCCceEEEEEeccCcEEEE---eeccCcce-EEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceeeeeeec
Confidence 9999999999999987663 33333334 578999999 89999999999999998887766554 45567778886
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
. ++.+++.....|.|.|-.+...++...+..|...+.|+.|+|+|+++|+|+. +..+.+||+..--+++.+.-+
T Consensus 157 ~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R~isRl 230 (313)
T KOG1407|consen 157 N--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICERCISRL 230 (313)
T ss_pred C--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhheeeccc
Confidence 4 3457777777899999999999999999999999999999999999999987 777999999998888999888
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
. -+|+.+.|+.||++|++|++|..|-|=++++|..+..++..+. ...|+|+|...+||.+.+|
T Consensus 231 d---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~---t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 231 D---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGP---TFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred c---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCC---ceeEEecCCCceeeEEecC
Confidence 8 8999999999999999999999999999999999999987655 6899999999999988775
No 73
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.3e-28 Score=248.93 Aligned_cols=284 Identities=19% Similarity=0.233 Sum_probs=239.6
Q ss_pred ccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+.|. .|.+++|||...+ +|+.+ +-.+.||+..++..... +.-....|.++.|-.||++||+|...
T Consensus 24 ke~~-~vssl~fsp~~P~d~aVt~----------S~rvqly~~~~~~~~k~---~srFk~~v~s~~fR~DG~LlaaGD~s 89 (487)
T KOG0310|consen 24 KEHN-SVSSLCFSPKHPYDFAVTS----------SVRVQLYSSVTRSVRKT---FSRFKDVVYSVDFRSDGRLLAAGDES 89 (487)
T ss_pred cccC-cceeEecCCCCCCceEEec----------ccEEEEEecchhhhhhh---HHhhccceeEEEeecCCeEEEccCCc
Confidence 4454 9999999996643 33321 27789999987665433 22245789999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
|.|+|+|+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|++.|.+.+++|.
T Consensus 90 G~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~- 164 (487)
T KOG0310|consen 90 GHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPA- 164 (487)
T ss_pred CcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccC-
Confidence 999999977754455 67899999999999999886 7999999999999999999987799999999999999875
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeecccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQL 568 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~ 568 (1084)
++..++|||.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|.. +..+..|.
T Consensus 165 ~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~~~H~- 238 (487)
T KOG0310|consen 165 NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSMFNHN- 238 (487)
T ss_pred CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhhhccc-
Confidence 457999999999999999999866555567888999999999999999987 45699999996544 44444466
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..|+|+++..++..|++|+-|+.+++||+.+-+.+..+...+. |.+++.+|+++.+++|..+|.+.+-+..
T Consensus 239 --KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~p---vLsiavs~dd~t~viGmsnGlv~~rr~~ 309 (487)
T KOG0310|consen 239 --KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPGP---VLSIAVSPDDQTVVIGMSNGLVSIRRRE 309 (487)
T ss_pred --ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecccc---eeeEEecCCCceEEEecccceeeeehhh
Confidence 8999999999999999999999999999999999998876544 8999999999999999999988776443
No 74
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.3e-27 Score=225.84 Aligned_cols=286 Identities=13% Similarity=0.156 Sum_probs=239.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.||+.+++.+.|+.+|.+|.+++.|.++.||-..+|+.+. ++.||.+.|+|++.+-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 378899999999999999999999999999999998998776 8899999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-----CCeEEEEECC-------CCCceEeecCCCCeEEEEEEc
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s 530 (1084)
|+++|+++.+++ ...+|..+.|++ +|++++.... .+.|.++|++ ..++...+..+...++.+-|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 999999999997 677899999965 4556655543 3569999987 445577778888899999999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
|-+++|++|.. ++.|.+||+++|+. +..-..|. ..|+.+.+++|..++++++.|.+-++||..+-+.++++.
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999976 66799999999854 44445565 799999999999999999999999999999999999997
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECCCeEEE--------------EEcCCCCeeeeccccccceeEEEEcCCCceeeeec
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANENRIKI--------------LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i--------------wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 675 (1084)
... +|++.+++|....++.|+.....-+ |++-..+.+...++|-++|++++++
T Consensus 230 te~---PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh---------- 296 (327)
T KOG0643|consen 230 TER---PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH---------- 296 (327)
T ss_pred ecc---cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence 654 4899999998888877765433222 2222224566778999999999998
Q ss_pred cCceeEecCCCCCCCCccceecccCccccccce
Q 001403 676 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 676 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+|+..++|+.||.||+..++
T Consensus 297 ------------PdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 297 ------------PDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred ------------CCCcccccCCCCceEEEEEec
Confidence 678888889999988886543
No 75
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.2e-27 Score=226.05 Aligned_cols=301 Identities=13% Similarity=0.215 Sum_probs=243.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.+.||..+++.+.|+.+|. +|++|+.|.++.||-..+|+.+.++.||.+.|+++.. +.+...+++|+.|.++++||
T Consensus 5 ~l~GHERplTqiKyN~eGD--LlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Di--d~~s~~liTGSAD~t~kLWD 80 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGD--LLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDI--DWDSKHLITGSADQTAKLWD 80 (327)
T ss_pred ccccCccccceEEecCCCc--EEEEecCCCCceEEEecCCceeeeecCCCceEEEEEe--cCCcceeeeccccceeEEEE
Confidence 4679999999999999999 9999999999999998999999999999999999998 44668999999999999999
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC-CCCeeEEEecCC-------CceEeeeeeccccccCceEEEEEc
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNES-------EGAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~-~~~~~i~~wd~~-------~~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
+++++++..+... .+|..+.|+++|++++.+.... ...+.|.++|++ ..++...+..+. ..++.+.|+
T Consensus 81 v~tGk~la~~k~~-~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~---skit~a~Wg 156 (327)
T KOG0643|consen 81 VETGKQLATWKTN-SPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD---SKITSALWG 156 (327)
T ss_pred cCCCcEEEEeecC-CeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc---cceeeeeec
Confidence 9999998887654 4899999999999998876422 124568899888 455677777776 889999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
|-+++|++|.+||.|.+||+++|.. +.....|.. .|+.+.+++|..++++++.|.+-++||..+...+.+..
T Consensus 157 ~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~--~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~----- 229 (327)
T KOG0643|consen 157 PLGETIIAGHEDGSISIYDARTGKELVDSDEEHSS--KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT----- 229 (327)
T ss_pred ccCCEEEEecCCCcEEEEEcccCceeeechhhhcc--ccccccccCCcceEEecccCccceeeeccceeeEEEee-----
Confidence 9999999999999999999999854 445455544 69999999999999999999999999998776555443
Q ss_pred eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC
Q 001403 659 LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG 738 (1084)
Q Consensus 659 i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g 738 (1084)
...++++.+++|-.
T Consensus 230 ------------------------------------------------------------------te~PvN~aaisP~~ 243 (327)
T KOG0643|consen 230 ------------------------------------------------------------------TERPVNTAAISPLL 243 (327)
T ss_pred ------------------------------------------------------------------ecccccceeccccc
Confidence 22355666677766
Q ss_pred CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CC-
Q 001403 739 QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GG- 815 (1084)
Q Consensus 739 ~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg- 815 (1084)
..++.++.....- +.+.+ .|
T Consensus 244 d~VilgGGqeA~d---------------------------------------------------------VTTT~~r~GK 266 (327)
T KOG0643|consen 244 DHVILGGGQEAMD---------------------------------------------------------VTTTSTRAGK 266 (327)
T ss_pred ceEEecCCceeee---------------------------------------------------------eeeecccccc
Confidence 6565554431000 01111 12
Q ss_pred -eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 816 -VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 816 -~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
..++|++-..+.+...++|-++|++++|+| +|+..++|++||.|++...+.
T Consensus 267 FEArFyh~i~eEEigrvkGHFGPINsvAfhP-dGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 267 FEARFYHLIFEEEIGRVKGHFGPINSVAFHP-DGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hhhhHHHHHHHHHhccccccccCcceeEECC-CCcccccCCCCceEEEEEecc
Confidence 245666666778888999999999999999 999999999999999986653
No 76
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=2.6e-27 Score=235.09 Aligned_cols=310 Identities=17% Similarity=0.264 Sum_probs=240.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCC-cEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~l~s~~~d~~i~vwd~~ 465 (1084)
|.+.|.++.-. ++.+++|+.||.+++||..+. ....+.||.++|.+++|--... .-.+++++.|.++++|-++
T Consensus 104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk----~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~ 177 (423)
T KOG0313|consen 104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK----SIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWN 177 (423)
T ss_pred chhhhhhhccc--CceEEEeecCCeeEEEecCCc----eEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEec
Confidence 88999999888 889999999999999998864 2336889999999888843322 1159999999999999988
Q ss_pred CCcee----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 466 TGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 466 ~g~~~----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
.+... ....||...|.++.. .++|..+++|+.|.++.+|+.... ..-.++.... -+.++.
T Consensus 178 ~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~-~~~~~E~~s~-------~rrk~~------ 241 (423)
T KOG0313|consen 178 VGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETD-EEDELESSSN-------RRRKKQ------ 241 (423)
T ss_pred CchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCC-ccccccccch-------hhhhhh------
Confidence 77543 444699999999988 557789999999999999983321 1111111000 000000
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
-+-=...++.++..+.||. .+|.++.|++ ...+++++.|.+|+.||+.++..+..+.... ...++.
T Consensus 242 -------~~~~~~~~r~P~vtl~GHt---~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~ 307 (423)
T KOG0313|consen 242 -------KREKEGGTRTPLVTLEGHT---EPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCIS 307 (423)
T ss_pred -------hhhhcccccCceEEecccc---cceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEee
Confidence 0000123456777889998 9999999988 6789999999999999999999988886543 378888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
.+|..++|++|+.|..+++||.+++.
T Consensus 308 ~~~~~~Ll~~gssdr~irl~DPR~~~------------------------------------------------------ 333 (423)
T KOG0313|consen 308 YSPLSKLLASGSSDRHIRLWDPRTGD------------------------------------------------------ 333 (423)
T ss_pred cccccceeeecCCCCceeecCCCCCC------------------------------------------------------
Confidence 88888888888888888888766430
Q ss_pred cccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCC
Q 001403 702 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 781 (1084)
Q Consensus 702 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 781 (1084)
T Consensus 334 -------------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 334 -------------------------------------------------------------------------------- 333 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEE
Q 001403 782 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 782 ~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~ 861 (1084)
| .-...++.+|...|.++.|+|.+...|++|+.|++++
T Consensus 334 ------------------------g------------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~k 371 (423)
T KOG0313|consen 334 ------------------------G------------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVK 371 (423)
T ss_pred ------------------------C------------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEE
Confidence 0 0011345567778888888887788999999999999
Q ss_pred EEEcCCce-eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 862 IYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 862 iwd~~~~~-~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+||+++.+ ++..+.+|.+.|.++.|+ ++.++++||.|.+|+|+.-..
T Consensus 372 lWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 372 LWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred EEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 99999987 899999999999999997 678999999999999987553
No 77
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=6.9e-27 Score=225.19 Aligned_cols=276 Identities=17% Similarity=0.255 Sum_probs=222.2
Q ss_pred CCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 333 GSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 333 h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
-.+.|.+++||| ...++++++|| ++||+|+++....... .....|.++|.+++|+.||..+++|+.|+.
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD---------~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWD---------GTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred cccchheeEeccccCceEEecccC---------CceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 356999999999 66777789999 9999999987533333 235669999999999999999999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
+++||+.+++.. .+..|.++|..+.|-+...+..|+||+.|++|++||.+...++.++. -.+.++++.. .-
T Consensus 96 ~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~Dv----~~ 166 (347)
T KOG0647|consen 96 AKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAADV----LY 166 (347)
T ss_pred eEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeehhc----cC
Confidence 999999998643 47789999999999887665589999999999999999999988886 5667777754 22
Q ss_pred cEEEEEecCCeEEEEECCCCCceEee-c-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc--eEeeeeeccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQ 567 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~~~~~~~~ 567 (1084)
.+++.+..++.|.+|++++....... . .-.-.+.+++..+|....+.|+. +|.+.+..+..+ +.-..|+.|.
T Consensus 167 pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~nFtFkCHR 242 (347)
T KOG0647|consen 167 PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKDNFTFKCHR 242 (347)
T ss_pred ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccCceeEEEec
Confidence 58899999999999999765543322 1 22336889999898888888876 555666666655 5556677776
Q ss_pred cc------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 568 LQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 568 ~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
.. ...|++++|+|....|++++.||++.+||-.....++..+.+.. +|.+.+|+.+|.++|.+.
T Consensus 243 ~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 243 STNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred cCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 21 23578899999999999999999999999988777777665543 699999999999888764
No 78
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.96 E-value=4.5e-27 Score=233.38 Aligned_cols=283 Identities=20% Similarity=0.358 Sum_probs=235.5
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC---CCEEEEEe
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLLGVAY 407 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd---g~~las~~ 407 (1084)
..|.+.|.++... ++++.+|++| |.++|||.+..... ...||.++|.+++|--. ...+++++
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYD---------g~~riWd~~Gk~~~----~~~Ght~~ik~v~~v~~n~~~~~fvsas 166 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYD---------GTSRIWDLKGKSIK----TIVGHTGPIKSVAWVIKNSSSCLFVSAS 166 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecC---------CeeEEEecCCceEE----EEecCCcceeeeEEEecCCccceEEEec
Confidence 4678899999999 8899999999 99999999754332 36789999998887543 33699999
Q ss_pred CCCEEEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--------------------
Q 001403 408 SKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-------------------- 466 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~-------------------- 466 (1084)
.|.++++|.++.++.. .....-.||...|.+++..++|. .+++|+.|.+|+||+.++
T Consensus 167 ~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~ 244 (423)
T KOG0313|consen 167 MDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKRE 244 (423)
T ss_pred CCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhhhhhhhhh
Confidence 9999999999877643 22223459999999999999999 899999999999999321
Q ss_pred -----CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 467 -----GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 467 -----g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
+.++.++.||..+|.++.|.. ...+++++.|.+|+.||+.+++....+... ..+.++..+|..++|++++.
T Consensus 245 ~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl~~i~~~~~~~Ll~~gss 320 (423)
T KOG0313|consen 245 KEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSLNCISYSPLSKLLASGSS 320 (423)
T ss_pred hcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cceeEeecccccceeeecCC
Confidence 234677899999999999964 358999999999999999998887766544 47899999999999999987
Q ss_pred CCCCCeeEEEecCCCce---EeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe-EEEEEcCCCCCCC
Q 001403 542 SKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPE 616 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~ 616 (1084)
+..+++||.+++. ..+.+.+|. +.|.++.|+|... +|++++.|+++++||+++.. ++..+..|.. .
T Consensus 321 ----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~D--K 391 (423)
T KOG0313|consen 321 ----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHND--K 391 (423)
T ss_pred ----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCc--e
Confidence 6669999999753 456788888 8999999999865 56679999999999999877 8888887754 5
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
|.++.|+. +..+++|+.|.+|+|+...
T Consensus 392 vl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 392 VLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred EEEEeccC-CceEEeccCcceEEEeccc
Confidence 88999984 6699999999999998643
No 79
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=4.8e-27 Score=241.26 Aligned_cols=282 Identities=15% Similarity=0.209 Sum_probs=232.2
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+.|.+++|+|...+=++.+..-.+.+|+.... .....+. .....+.++.|..
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~~s----rFk~~v~s~~fR~ 78 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKTFS----RFKDVVYSVDFRS 78 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhhHH----hhccceeEEEeec
Confidence 4578999999998776666666666777664321 1111110 1567899999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
||+++++|+ .|.|++||+.+...++.+.+|..++..+.|+|+++..+++|++|+.+++||+.+......+.+|++.|.|
T Consensus 79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~ 158 (487)
T KOG0310|consen 79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC 158 (487)
T ss_pred CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence 999999998 5999999988877888999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee
Q 001403 884 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 962 (1084)
Q Consensus 884 l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~ 962 (1084)
.+|+|- +.+++|||.||+|++||+.... ...+..-.++ +|..+.|-|.|..+|+++.+.|+|||+.+|...
T Consensus 159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg~-----pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql 230 (487)
T KOG0310|consen 159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHGC-----PVESVLALPSGSLIASAGGNSVKVWDLTTGGQL 230 (487)
T ss_pred eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCCC-----ceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence 999995 5689999999999999998842 1222222222 699999999999999999999999999977665
Q ss_pred eEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEe
Q 001403 963 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1042 (1084)
Q Consensus 963 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1042 (1084)
......|...|+|+++..|++.|++++-|+.|++||+.+-+.+.++.. +. + .++++.+| |+..+++|.
T Consensus 231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~----~~-----p--vLsiavs~-dd~t~viGm 298 (487)
T KOG0310|consen 231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY----PG-----P--VLSIAVSP-DDQTVVIGM 298 (487)
T ss_pred hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec----cc-----c--eeeEEecC-CCceEEEec
Confidence 554556999999999999999999999999999999998888877761 22 2 35677788 578999999
Q ss_pred CCCcEEEEcC
Q 001403 1043 TNGEVYVIEP 1052 (1084)
Q Consensus 1043 ~dg~v~vw~~ 1052 (1084)
.||.+.+=+.
T Consensus 299 snGlv~~rr~ 308 (487)
T KOG0310|consen 299 SNGLVSIRRR 308 (487)
T ss_pred ccceeeeehh
Confidence 9999888743
No 80
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=5.8e-27 Score=264.29 Aligned_cols=306 Identities=17% Similarity=0.221 Sum_probs=240.2
Q ss_pred ccceEEEEEEecCCCeEEEee--cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 725 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+...|.++..+|||..+++++ .||.+++|+...-.. ....++..-. .+...+. .|.+.|.|+.|
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~--k~l~~m~--~h~~sv~CVR~ 77 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLP--KHLCTMD--DHDGSVNCVRF 77 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccc--hhheeec--cccCceeEEEE
Confidence 445689999999999999999 799999998653210 1111222111 1111111 49999999999
Q ss_pred cCCCCEEEEEeC-CeEEEEEcCC------------------ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 803 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 803 s~dg~~l~~~sd-g~i~vwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
+|||++||+|+| +.|.+|+... .+....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus 78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw 156 (942)
T KOG0973|consen 78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW 156 (942)
T ss_pred CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence 999999999995 7789998762 246778999999999999999 89999999999999999
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++......+ .+..+..+.........+.|||||++|
T Consensus 157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l 234 (942)
T KOG0973|consen 157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL 234 (942)
T ss_pred ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence 999999999999999999999999999999999999999999977744322 444444444444568899999999999
Q ss_pred EEE--eC---CeEEEEEcCCcceeeEeecCCCCCEEEEEEcc--------CC-----C----EEEEEeCCCcEEEEEcCC
Q 001403 944 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 944 a~~--~d---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~i~vwd~~~ 1001 (1084)
++. .+ .++.|.+-.+.+.-.. +-||.+++.+++|+| +| . .+|+|+.|++|.||....
T Consensus 235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~ 313 (942)
T KOG0973|consen 235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL 313 (942)
T ss_pred cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence 993 22 3688888766665555 558999999999998 11 1 578999999999999977
Q ss_pred CceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 1002 LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 1002 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
.+.+..+. ...+. ..+.++|+| ||..|.+++.||+|.+..+.+.+..
T Consensus 314 ~RPl~vi~-------~lf~~--SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~ElG 360 (942)
T KOG0973|consen 314 PRPLFVIH-------NLFNK--SIVDMSWSP-DGFSLFACSLDGTVALIHFEEKELG 360 (942)
T ss_pred CCchhhhh-------hhhcC--ceeeeeEcC-CCCeEEEEecCCeEEEEEcchHHhC
Confidence 76654333 11111 246899999 6999999999999999999887643
No 81
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=9.2e-26 Score=207.41 Aligned_cols=296 Identities=17% Similarity=0.234 Sum_probs=232.5
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc----------cc--cceeeeecCCCCCeEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC----------SM--LFKTALVRDPGVSVNR 393 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~----------~~--~~~~~~~~~h~~~V~~ 393 (1084)
++.+|.. +..|.+++|+|.|.+-|+|+.. ++++|--...- .. ....+.-+.|.+.|.|
T Consensus 25 ~i~~l~d-sqairav~fhp~g~lyavgsns---------kt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc 94 (350)
T KOG0641|consen 25 AINILED-SQAIRAVAFHPAGGLYAVGSNS---------KTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYC 94 (350)
T ss_pred EEEEecc-hhheeeEEecCCCceEEeccCC---------ceEEEEccccccCcccccccccCCCeEEeeeccccCccEEE
Confidence 4445544 4599999999999999998655 77777543211 11 1111124568999999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEc--cCCccccceeeeecccccEeEEEeecC---CCcEEEEEEe-CCCcEEEEECCCC
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTG 467 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~-~d~~i~vwd~~~g 467 (1084)
.+|||+|.+||+|+.|.+|++.-. ++.+....-.++.-|.+.|..++|..+ +.. +|++++ .|..|.+-|..+|
T Consensus 95 ~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g 173 (350)
T KOG0641|consen 95 TAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRG 173 (350)
T ss_pred EEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCC
Confidence 999999999999999999988654 444445555578899999999999654 222 667665 4788888999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC-------CCCeEEEEEEcCCCCEEEEEe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+..+.+.+|.+.|.++-- -++-.+++|+.|.+|++||++-......+.. ....|.+++..|.|++|+++.
T Consensus 174 ~~~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~ 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH 250 (350)
T ss_pred CcceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc
Confidence 999999999999988742 2557999999999999999987776655432 224789999999999999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCCCCC
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPE 616 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~ 616 (1084)
. +....+||++.++.++.+..|. ..|.++.|+|...++++++.|..|++-|+... -.+.....| ...
T Consensus 251 ~----dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk 321 (350)
T KOG0641|consen 251 A----DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDK 321 (350)
T ss_pred C----CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCc
Confidence 5 6668999999999999999988 89999999999999999999999999998642 122222222 334
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+..+.|+|..-.+++.+.|.++.+|.+.
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 6788999998889999999999999764
No 82
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.7e-27 Score=260.35 Aligned_cols=297 Identities=16% Similarity=0.176 Sum_probs=224.3
Q ss_pred ceeeecc-cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEE----------
Q 001403 325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR---------- 393 (1084)
Q Consensus 325 ~~~~~l~-~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~---------- 393 (1084)
...+-+. .|.+.||++.||+||+|||+|..| +.|+||.+..++.... +...-.+
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD---------~virVWkVie~e~~~~------~~~~~~~~~~~~~~~s~ 321 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSHDGKYLASAGED---------GVIRVWKVIESERMRV------AEGDSSCMYFEYNANSQ 321 (712)
T ss_pred EEeeccccccCCcEEEEEeCCCCceeeecCCC---------ceEEEEEEeccchhcc------cccccchhhhhhhhccc
Confidence 4455666 999999999999999999999888 9999999976443111 1111111
Q ss_pred ---EEEcC---CCC--EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 394 ---VVWSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 394 ---v~fsp---dg~--~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
+.-++ .++ ..-.+.....+.+-+..-.-.-+++..+.||.+.|..+.||.++ +|++++.|++|++|++.
T Consensus 322 ~~p~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~ 398 (712)
T KOG0283|consen 322 IEPSTSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPG 398 (712)
T ss_pred cCccccccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCC
Confidence 11111 011 11112222222222211111123445788999999999999876 69999999999999999
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
...+++.|. |.+-|+|++|+|..| +++++|+.||.+|||++...+...-...+ .-|++++|.|||+..++|+.
T Consensus 399 ~~~CL~~F~-HndfVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~---- 471 (712)
T KOG0283|consen 399 RKECLKVFS-HNDFVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF---- 471 (712)
T ss_pred CcceeeEEe-cCCeeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----
Confidence 999999998 999999999999754 89999999999999999865554443333 68999999999999999998
Q ss_pred CeeEEEecCCCceEeeeeeccc-----cccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~-----~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+|..++|+....+......-+. .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-..
T Consensus 472 ~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~ 551 (712)
T KOG0283|consen 472 NGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQIS 551 (712)
T ss_pred ccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCccee
Confidence 6779999988777665554322 112479999998754 3588899999999999999999999987666555667
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..|+.||++++++++|..|++|+....
T Consensus 552 Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 552 ASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred eeEccCCCEEEEeecCceEEEEeCCCC
Confidence 899999999999999999999998654
No 83
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=4e-27 Score=242.06 Aligned_cols=308 Identities=18% Similarity=0.232 Sum_probs=243.5
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc--cceeeeecCCCCCeEEEEE
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM--LFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~--~~~~~~~~~h~~~V~~v~f 396 (1084)
+..+|..+...|.+|+..|.++++-|.|-++++|+.| .+|+.||+..... ...+.+.......|.+++|
T Consensus 152 ~~~IP~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~D---------y~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y 222 (641)
T KOG0772|consen 152 IKLIPGSHEIQLKHGTKIVSALAVDPSGARFVSGSLD---------YTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY 222 (641)
T ss_pred hhcCCccceEeccCCceEEEEeeecCCCceeeecccc---------ceEEEEecccccccchhhhccCcccccccceeee
Confidence 4567888888999999999999999999999999999 9999999975322 2222333445678999999
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCcc---------ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
|+.|..|++.+.....+|+|-..-+. ++-+..-+||...++|.+|.|+.+. .++|++.||++++||+..-
T Consensus 223 s~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv~~~ 301 (641)
T KOG0772|consen 223 SVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDVNNT 301 (641)
T ss_pred cCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEecCCc
Confidence 99999999999999999999775433 2223345689999999999999887 7999999999999999854
Q ss_pred c-eeeEec-----cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---EeecCCCC--eEEEEEEcCCCCEE
Q 001403 468 S-RTYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGL--GCTRMAYSANGRRL 536 (1084)
Q Consensus 468 ~-~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~--~i~~~~~s~d~~~l 536 (1084)
+ .+..++ +..-++++++| +++|..+++|..||.|.+|+....... ..-..|.. .|++++||+||++|
T Consensus 302 k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~L 379 (641)
T KOG0772|consen 302 KSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYL 379 (641)
T ss_pred hhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchh
Confidence 3 233332 33456788888 557889999999999999998654332 23344444 89999999999999
Q ss_pred EEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEE------CCCcEEEEECCCCeEEEEEc
Q 001403 537 FSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~ 609 (1084)
++-+. +..+.+||++.. +++....+.. ...+-+.++|||+.+.|++|. ..|++++||..+.+.++.+.
T Consensus 380 lSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 380 LSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred hhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 99876 667999999874 4444444433 124567789999999999975 45789999999999999988
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
... ..|..+.|+|.-+.+.+++.||.+++|--.+
T Consensus 455 i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 455 IST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred CCC--ceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 663 3688999999999999999999999885443
No 84
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.95 E-value=4e-27 Score=226.72 Aligned_cols=307 Identities=13% Similarity=0.194 Sum_probs=236.4
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
...+.+.+|++||.++|+|+.|..|+|+|++..-.-... .. +
T Consensus 112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~---~e-----------------------------------m 153 (430)
T KOG0640|consen 112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKP---KE-----------------------------------M 153 (430)
T ss_pred ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcch---hh-----------------------------------h
Confidence 346889999999999999999999999998732000000 00 0
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
..+.. .....+....-.|...|..+.|.|....|++++.|++++++|+.+..... ..+
T Consensus 154 ~~~~~--------------qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--------A~K 211 (430)
T KOG0640|consen 154 ISGDT--------------QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--------AFK 211 (430)
T ss_pred ccCCc--------------ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--------HHH
Confidence 00000 00000000011288899999999999999999999999999987542200 000
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEE---cCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~ 849 (1084)
+ + ....+|.++.|+|.|.+|++|.+ .++++||+++.++...- ..|.+.|+++.+++ .++
T Consensus 212 ~-------------~---qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~ 274 (430)
T KOG0640|consen 212 V-------------F---QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS 274 (430)
T ss_pred H-------------h---hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence 0 1 15678999999999999999996 78999999998887654 35788999999999 899
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeec-cccc-CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLE-GHSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~-~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
+.++|+.||.|++||--+++++.++. +|.+ .|.+..|+.+|+++++.|.|.+|++|.+.++.......-....+..
T Consensus 275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq-- 352 (430)
T KOG0640|consen 275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQ-- 352 (430)
T ss_pred EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccch--
Confidence 99999999999999999999998875 4654 7999999999999999999999999999997643322211111221
Q ss_pred CCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 928 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.--+...|.....+++.- ..+.++-||.+++..+..+..+|++.+..+.-||.+.-+.||+.|..+|+|--.
T Consensus 353 -~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 353 -KHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred -hhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeeec
Confidence 134567788888888874 456799999999999999999999999999999999999999999999999643
No 85
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.95 E-value=1.2e-26 Score=260.98 Aligned_cols=284 Identities=16% Similarity=0.276 Sum_probs=248.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.|...+.+..|. +.+++++..| .++.+||..++...... +.||.+.|++++|..-+.+|++|+.|.+
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~---------~tl~~~~~~~~~~i~~~--l~GH~g~V~~l~~~~~~~~lvsgS~D~t 272 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDD---------STLHLWDLNNGYLILTR--LVGHFGGVWGLAFPSGGDKLVSGSTDKT 272 (537)
T ss_pred cCcchhhhheee--cCeEEecCCC---------ceeEEeecccceEEEee--ccCCCCCceeEEEecCCCEEEEEecCCc
Confidence 356688999999 6678888777 99999999887666543 8899999999999988899999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
++|||..+|++.. .+.+|.+.|.++...+. .+++|+.|.+|++|++.++.++..+.+|.++|.++... +
T Consensus 273 ~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~----~ 341 (537)
T KOG0274|consen 273 ERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD----E 341 (537)
T ss_pred EEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec----C
Confidence 9999999998877 78899999999887643 68889999999999999999999999999999999883 5
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeecccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~ 570 (1084)
.++++|+.||+|++||+.+.+....+.+|...|.++.+.+. ..+++++. +..|++||+.++ +++..+.+|.
T Consensus 342 ~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~tl~~h~--- 413 (537)
T KOG0274|consen 342 PLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHTLQGHT--- 413 (537)
T ss_pred CEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhhhcCCc---
Confidence 69999999999999999999999999999999999988776 88999987 567999999999 9999999988
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeee
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
.-+..+. ..++++++++.|++|++||..++++++.+... +...|..+++. ...+++++.+|.+++||+.+++...
T Consensus 414 ~~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~ 488 (537)
T KOG0274|consen 414 SLVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIR 488 (537)
T ss_pred ccccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhh
Confidence 5665444 45789999999999999999999999999874 22345666554 4788999999999999999998776
Q ss_pred ec
Q 001403 651 AA 652 (1084)
Q Consensus 651 ~~ 652 (1084)
.+
T Consensus 489 ~l 490 (537)
T KOG0274|consen 489 TL 490 (537)
T ss_pred hh
Confidence 55
No 86
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-25 Score=218.12 Aligned_cols=287 Identities=15% Similarity=0.219 Sum_probs=236.8
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS- 408 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~- 408 (1084)
+..-.+.|.++.||++|.+|++.+.| .+++|||..++.+... +..++-.|..++|......++.++.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~d---------Dsl~LYd~~~g~~~~t---i~skkyG~~~~~Fth~~~~~i~sStk 77 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSED---------DSLRLYDSLSGKQVKT---INSKKYGVDLACFTHHSNTVIHSSTK 77 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCC---------CeEEEEEcCCCceeeE---eecccccccEEEEecCCceEEEccCC
Confidence 34455689999999999999998777 8999999998877654 3446678999999888777777776
Q ss_pred -CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 409 -KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 409 -dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
|.+|+.-++.+.+.++ -+.||...|.+++.+|-+. .+++++.|++|++||++..++...+.....++. +|
T Consensus 78 ~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~--Af-- 148 (311)
T KOG1446|consen 78 EDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIA--AF-- 148 (311)
T ss_pred CCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcce--eE--
Confidence 8899999999998777 7889999999999999998 899999999999999998888877765555554 55
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCC--ceEeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.|-++|++...+.|++||++... +...+. ........+.|||||+.|+.+.. .+.+++.|.-+|..+..
T Consensus 149 Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G~~~~t 224 (311)
T KOG1446|consen 149 DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDGTVKST 224 (311)
T ss_pred CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCCcEeee
Confidence 5677888888888899999998752 222332 33557899999999999999875 67799999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.++.....--...+|+||++++++|+.||+|.+|++++|..+..+.+. ....+.++.|+|....+++++ ..+.+|-
T Consensus 225 fs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~l~fw~ 301 (311)
T KOG1446|consen 225 FSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SNLVFWL 301 (311)
T ss_pred EeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ceEEEEe
Confidence 9988844444467889999999999999999999999999999999875 334688999999877777664 5777886
Q ss_pred cC
Q 001403 643 TP 644 (1084)
Q Consensus 643 ~~ 644 (1084)
..
T Consensus 302 p~ 303 (311)
T KOG1446|consen 302 PD 303 (311)
T ss_pred cc
Confidence 54
No 87
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=9.3e-27 Score=218.58 Aligned_cols=291 Identities=16% Similarity=0.213 Sum_probs=228.2
Q ss_pred CceEEEEcC--CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEE
Q 001403 336 SPMSMDFHP--VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIV 412 (1084)
Q Consensus 336 ~V~~v~~sp--dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v 412 (1084)
.=.++.||| ++++.++...... ....|++.|-++.......+...+ .-.+.+..|+||++ ...+++++.||++
T Consensus 10 ~GysvqfSPf~~nrLavAt~q~yG---l~G~G~L~ile~~~~~gi~e~~s~-d~~D~LfdV~Wse~~e~~~~~a~GDGSL 85 (311)
T KOG0277|consen 10 HGYSVQFSPFVENRLAVATAQHYG---LAGNGRLFILEVTDPKGIQECQSY-DTEDGLFDVAWSENHENQVIAASGDGSL 85 (311)
T ss_pred ccceeEecccccchhheeehhhcc---cccCceEEEEecCCCCCeEEEEee-ecccceeEeeecCCCcceEEEEecCceE
Confidence 346889999 4444333221111 112488999998643333222111 23578999999995 5678888999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 492 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~ 492 (1084)
+|||+.... .++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.+|...|....|+|. ..+
T Consensus 86 rl~d~~~~s--~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~-~~n 161 (311)
T KOG0277|consen 86 RLFDLTMPS--KPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPH-IPN 161 (311)
T ss_pred EEeccCCCC--cchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCC-CCC
Confidence 999955433 455578899999999999998776 5777799999999999999999999999999999999986 457
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCC-ceEeeeeecccccc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQH 570 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~ 570 (1084)
+++++|.||++++||++.......+..|...+.++.|+.-. ..+++++. ++.|+.||+++ ..++..+.+|.
T Consensus 162 lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~pl~eL~gh~--- 234 (311)
T KOG0277|consen 162 LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTPLFELNGHG--- 234 (311)
T ss_pred eEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccccceeecCCc---
Confidence 99999999999999999988888899999999999999855 45666654 77899999986 45567777877
Q ss_pred CceEEEEEcCCC-CEEEEEECCCcEEEEECCCCe-EEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEc
Q 001403 571 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 571 ~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|+.+.|||.. ..|++++.|-+++|||...+. .+.+...|.. .+..+.|++ ++.++|..+-|+.++||+.
T Consensus 235 ~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtE--Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 235 LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTE--FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccce--EEeccccccccCceeeecccccceeeecc
Confidence 899999999975 567889999999999998543 4445554433 577888887 6789999999999999984
No 88
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=9e-26 Score=254.25 Aligned_cols=281 Identities=12% Similarity=0.135 Sum_probs=212.1
Q ss_pred CCCCceEEEEcCCCceeeeec-------ccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGL-------WDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG 404 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~-------~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~la 404 (1084)
|-..|.....++|+..++++. |+... +...+|..+.+........+.||.+.|.+++|+| ++++||
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~g------g~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLG------STAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCC------ceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 334566666666654444432 33111 2223333333332222335789999999999999 899999
Q ss_pred EEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 405 VAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+|||+++++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999986532 1234478899999999999998643 79999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce-
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA- 558 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~- 558 (1084)
.+++|++ ++.+|++++.||.|++||+++++....+..|... ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999965 6789999999999999999998887777777653 45678899999988887655557889999998754
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.......+. ...+....|+++++.+++++ .|+.|++||+.+++.+....... ...+..++|.|.
T Consensus 250 p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred ceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 333333222 23566678999999999887 59999999999998877765432 234678888884
No 89
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=2.8e-25 Score=216.91 Aligned_cols=274 Identities=16% Similarity=0.186 Sum_probs=228.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~v 461 (1084)
+..-...|.++.|+++|.+|++++.|.+++|||..+|+.++ ++..+...|..++|..... .++.++. |.+|+.
T Consensus 10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry 84 (311)
T KOG1446|consen 10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY 84 (311)
T ss_pred cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence 44466899999999999999999999999999999998776 6667777899999988877 4555554 889999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
-++.+.+.++-|.||...|.+++.+|-+ ..+++++.|++|++||++..++...+.....+ .++|.|+|-.+|++..
T Consensus 85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~ 160 (311)
T KOG1446|consen 85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANG 160 (311)
T ss_pred EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecC
Confidence 9999999999999999999999997755 68999999999999999987776666555544 4789999999999874
Q ss_pred CCCCCeeEEEecCCCc--eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc-c
Q 001403 542 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~ 618 (1084)
...|.+||++.- .+...+.-..........+.|+|||+.++.+...+.+++.|.-+|..+..+..+.....+ .
T Consensus 161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~ 236 (311)
T KOG1446|consen 161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL 236 (311)
T ss_pred ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence 337999999863 344444433222367899999999999999999999999999999999988876543322 4
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc-cccceeEEEEcCCCce
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTV 670 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~ 670 (1084)
..+|+||++++++|+.||+|.+|+++++..+...++ +...+.++.|+|....
T Consensus 237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~m 289 (311)
T KOG1446|consen 237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAM 289 (311)
T ss_pred eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceee
Confidence 678999999999999999999999999999999988 5788888888875443
No 90
>PTZ00420 coronin; Provisional
Probab=99.95 E-value=3.5e-25 Score=249.74 Aligned_cols=273 Identities=10% Similarity=0.091 Sum_probs=207.8
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG 420 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~ 420 (1084)
+..+++++|. .|+..+|... +.+++|+..+... ...+.+|...|.+++|+|+ +.+||+|+.|++|+|||+.++
T Consensus 34 ia~n~~~~A~-~w~~~gGG~~--gvI~L~~~~r~~~---v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~ 107 (568)
T PTZ00420 34 IACSSGFVAV-PWEVEGGGLI--GAIRLENQMRKPP---VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHN 107 (568)
T ss_pred EeeCCCeEEE-EEEcCCCCce--eEEEeeecCCCce---EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Confidence 4555667776 5776555543 8999999876432 2347899999999999996 899999999999999999864
Q ss_pred cc-c----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 421 SD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 421 ~~-~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
.. . .....+.+|...|.+++|+|++.. ++++++.|++|+|||+++++.+..+. |...|.+++|++ +|.+|+
T Consensus 108 ~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLa 183 (568)
T PTZ00420 108 DESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLS 183 (568)
T ss_pred CccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEE
Confidence 32 1 122357799999999999999874 56789999999999999999887776 667899999955 678999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEE-----EEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCT-----RMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQ 569 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~-----~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~ 569 (1084)
+++.|+.|++||++++.....+..|.+.+. ...|++++.++++++.++..++.|++||+++ ++++..+..+. .
T Consensus 184 t~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~ 262 (568)
T PTZ00420 184 GTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-A 262 (568)
T ss_pred EEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-C
Confidence 999999999999999888888888776432 2345689999999887654456899999985 55555543332 1
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
.+.+......+++.++++|+.|++|++|++..+. +..+.......++.+++|.|..
T Consensus 263 ~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 263 SAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred ccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeecccccCCCccceEEcccc
Confidence 2333444445568889999999999999998774 3334333334457789999854
No 91
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.3e-26 Score=243.47 Aligned_cols=278 Identities=18% Similarity=0.256 Sum_probs=238.2
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 417 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~ 417 (1084)
.-+.|| ....||++. ...|++|+..++..... ...+...|+++.|+++|.+||+|..+|.|.|||.
T Consensus 181 nlldWs-s~n~laVal----------g~~vylW~~~s~~v~~l---~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~ 246 (484)
T KOG0305|consen 181 NLLDWS-SANVLAVAL----------GQSVYLWSASSGSVTEL---CSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDV 246 (484)
T ss_pred hHhhcc-cCCeEEEEe----------cceEEEEecCCCceEEe---EecCCCceEEEEECCCCCEEEEeecCCeEEEEeh
Confidence 346778 455666653 15899999988774332 2224789999999999999999999999999999
Q ss_pred cCCccccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcEEEEeecccCCCcEEE
Q 001403 418 HGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 418 ~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~-~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
.+.+.++ .+.+ |...|.+++|. +. .+.+|+.|+.|..+|++..+.... +.+|...|..+.|+ +|+.+++
T Consensus 247 ~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws--~d~~~lA 317 (484)
T KOG0305|consen 247 KEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWS--PDGNQLA 317 (484)
T ss_pred hhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEEC--CCCCeec
Confidence 9887666 6667 99999999998 34 689999999999999998877655 89999999999994 5778999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceE
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVS 574 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~ 574 (1084)
+|+.|+.+.|||.......+.+..|...|.+++|+| ....||+|+. ..|+.|++||..+|+.+...... ..|.
T Consensus 318 SGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg----sQVc 391 (484)
T KOG0305|consen 318 SGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG----SQVC 391 (484)
T ss_pred cCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC----Ccee
Confidence 999999999999988899999999999999999999 5567777765 45888999999999998887654 4899
Q ss_pred EEEEcCCCCEEEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 575 VVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 575 ~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.|++..+.|++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 392 sL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 392 SLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999988877 55778999999999999999887755 6999999999999999999999999998764
No 92
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=6.1e-26 Score=233.43 Aligned_cols=311 Identities=17% Similarity=0.223 Sum_probs=230.5
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
+|...|.++++.|.|.++++|+-|..|++||++.-... .+- .... .+.....|.++.||
T Consensus 165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas----------~~~--------fr~l---~P~E~h~i~sl~ys 223 (641)
T KOG0772|consen 165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS----------MRS--------FRQL---QPCETHQINSLQYS 223 (641)
T ss_pred CCceEEEEeeecCCCceeeeccccceEEEEeccccccc----------chh--------hhcc---Ccccccccceeeec
Confidence 47888999999999999999999999999998753210 000 0000 11246679999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEE------------EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTIL------------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~------------~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
+.|..|++.+ ....+|+|-...+... .-++|...++|.+|+|.+...+++++.||+++|||+...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9999888877 5789999976544332 23578889999999998888999999999999999987532
Q ss_pred -eeeec-----ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 871 -ISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 871 -~~~l~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
+..++ +..-+++.++|++||+++|.|+.||.|.+|+..+........+ ...|.. ...|++++||+||++|+
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~-g~~Itsi~FS~dg~~Ll 380 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLP-GQDITSISFSYDGNYLL 380 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCC-CCceeEEEeccccchhh
Confidence 22222 3345789999999999999999999999999865433222222 222321 13699999999999999
Q ss_pred E-EeCCeEEEEEcCCcce-eeEeec-CCCCCEEEEEEccCCCEEEEEeC------CCcEEEEEcCCCceeEEeccccccC
Q 001403 945 L-VHETHLAIYEAEELTC-LKQWFP-ISSVPISQATFSCDCRMVFTSFV------DGTLSIHEASNLEVQCRILSTAYLR 1015 (1084)
Q Consensus 945 ~-~~d~~i~vwd~~~~~~-~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~~~~~~~ 1015 (1084)
+ |.|+++++||++..+. +..+.. ....+-+.++||||.++|+||+. -|.+.+||..+.+.+.++...
T Consensus 381 SRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~---- 456 (641)
T KOG0772|consen 381 SRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS---- 456 (641)
T ss_pred hccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCC----
Confidence 9 8999999999986543 333221 12456788999999999999864 478999999999999887722
Q ss_pred CCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE-EcCCCCCCC---cccCCCCCccc
Q 001403 1016 PTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV-IEPNEPGDT---WAVLPPDEIVG 1069 (1084)
Q Consensus 1016 ~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v-w~~~~~~~~---~~~~~~~~~~~ 1069 (1084)
......+.|||. =++|.+|+.||+++| ||..++... +.+.||.....
T Consensus 457 ------~aSvv~~~Whpk-LNQi~~gsgdG~~~vyYdp~~S~RGak~cv~k~~rkk~~ 507 (641)
T KOG0772|consen 457 ------TASVVRCLWHPK-LNQIFAGSGDGTAHVYYDPNESIRGAKLCVVKPPRKKHI 507 (641)
T ss_pred ------CceEEEEeecch-hhheeeecCCCceEEEECccccccchhheeecCccccch
Confidence 123456889994 678999999999986 566665432 45555554433
No 93
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=2.2e-25 Score=210.38 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=215.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.+|+|+.+|.+||+|+.|+++.+|+++....... ....+|.+.|..++|+|.... .+++++.|.+|++||
T Consensus 16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~-~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKE-LVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD 93 (313)
T ss_pred hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhh-hcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence 567999999999999999999999999999999998754433 367799999999999998776 789999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
++++++...+....+.+. ++| +++|.+++.++.|..|.+.|.++.+.....+. ...+..++|+.++.+++...
T Consensus 94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~--- 166 (313)
T KOG1407|consen 94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN--- 166 (313)
T ss_pred eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec---
Confidence 999999998876666555 456 45778999999999999999887655443322 23567788887777776653
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
|.|.|.|.....-+++..++.|. ....++.|+|+|+++++|+.|..+-+||+...-+++.+....- +|..+.|+
T Consensus 167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 36789999888889999999998 8889999999999999999999999999999888888876654 59999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.||++||+++.|..|-|=++++|..+..+.
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred cCcceeeccCccceEEeEecccCCeEEEee
Confidence 999999999999999999988886555443
No 94
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=9.4e-26 Score=248.26 Aligned_cols=277 Identities=14% Similarity=0.198 Sum_probs=212.2
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc------C------------------cCc-ccce---------e
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T------------------LST-EATT---------K 769 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~------------------~~~-~~~~---------~ 769 (1084)
.|.+.|.++.||+||++|++++.||.|+||.+...+. . ... +... .
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 4899999999999999999999999999999866111 0 000 0000 0
Q ss_pred cCCeeecCCCCCcccccc-CcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCC
Q 001403 770 VPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~ 848 (1084)
..-.+.+..... +.... ....+|...|..+.||.++-+|-+.-|.+|++|++...++++.|. |...|+|++|+|-|.
T Consensus 345 s~~~~~p~~~f~-f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPCVLLPLKAFV-FSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred CccccCCCcccc-ccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000011110000 00000 012369999999999998755544449999999999999999998 999999999999999
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
+++++|+-||.||||++...+.+.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+.....-+....+.....
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999987776555544 77999999999999999999999999999987766666565555444444
Q ss_pred CCceEEEEccCCC--EEEEEeCCeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 929 PSETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 929 ~~v~~~~~s~dg~--~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
..|+.+.|.|... .|+++.|..|+|||..+...+..+...| ...-....|+.||++|+++++|..|++|+.+...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 5799999997654 7888999999999998888777755444 2334567899999999999999999999985543
No 95
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.94 E-value=1.3e-26 Score=232.63 Aligned_cols=285 Identities=18% Similarity=0.246 Sum_probs=239.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++ .+++++.|+.+++|+
T Consensus 171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn 247 (459)
T KOG0288|consen 171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN 247 (459)
T ss_pred hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence 55699999999999999999999999999999998876 233447888889999999999999 788899999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+...+...++.||.+.|+++.|.... ..+++|+.|.+|++||+....+..+.- ....+..++.+ ...++++..
T Consensus 248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~-- 320 (459)
T KOG0288|consen 248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF-- 320 (459)
T ss_pred ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence 99999999999999999999985443 349999999999999998755544332 22344445544 455666655
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC--CCCcceEE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC 621 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~ 621 (1084)
+..|+.||.++..+......+. .|+++..++++..+++.+.|.++.+.|+++.+....+...+. ....+.+.
T Consensus 321 --DkkvRfwD~Rs~~~~~sv~~gg----~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv 394 (459)
T KOG0288|consen 321 --DKKVRFWDIRSADKTRSVPLGG----RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV 394 (459)
T ss_pred --ccceEEEeccCCceeeEeecCc----ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence 5569999999999988888754 899999999999999999999999999999998888865432 22478899
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccc--eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
|||++.|+++|+.||.|+||++.++++...+...... |+++.|+ +.|..+++++.+
T Consensus 395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~ 452 (459)
T KOG0288|consen 395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ 452 (459)
T ss_pred ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence 9999999999999999999999999888877766555 9999998 457778888888
Q ss_pred Ccccccc
Q 001403 700 NKSEVEK 706 (1084)
Q Consensus 700 ~~i~~w~ 706 (1084)
+.+.+|.
T Consensus 453 ~~v~lW~ 459 (459)
T KOG0288|consen 453 KAVTLWT 459 (459)
T ss_pred cceEecC
Confidence 8888883
No 96
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.5e-23 Score=231.55 Aligned_cols=518 Identities=12% Similarity=0.121 Sum_probs=330.2
Q ss_pred EEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCc-EEEEEEeCCCcEEEEECCCCcee
Q 001403 392 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 392 ~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~-l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
....||+|++++.....+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++||...+..+
T Consensus 20 ~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 20 SPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred cccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 345799999999887655 59999999999887 78899999999999887663 47889999999999999999999
Q ss_pred eEeccCCCcEEEEeecc------------cCCCcEEEEEecC--CeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCE
Q 001403 471 YSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~------------~~~~~~l~s~s~d--g~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~ 535 (1084)
.++..+.. +.++.+.+ ..+-..+.+.+.+ +.++-+.+.+... ...+......-.++.+++.|.+
T Consensus 96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~ 174 (792)
T KOG1963|consen 96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF 174 (792)
T ss_pred EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence 88864432 33322211 1111111111111 1111111111100 0000001111356788888888
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeEEEEEcCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLLTTIDAGG 612 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~ 612 (1084)
.+.+. +..+.+|+..++... .....+..|...+++.+++|+++++++|..||.|.+|.--. +........|-
T Consensus 175 ~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW 249 (792)
T KOG1963|consen 175 KGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW 249 (792)
T ss_pred EEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe
Confidence 87776 445889988775411 11111222335589999999999999999999999996433 22222222223
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 692 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~ 692 (1084)
+...|.+++|+++|.+|.+|+..+.+.+|.+.+++.. -+..
T Consensus 250 H~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLPR-------------------------------------- 290 (792)
T KOG1963|consen 250 HHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLPR-------------------------------------- 290 (792)
T ss_pred cccccceeEEecCCceEeecccceEEEEEeecCCCcc-cccc--------------------------------------
Confidence 3346999999999999999999999999999987521 1110
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
-.+.|..+.+|||+........|+.|.+-....-.... .+
T Consensus 291 --------------------------------Lgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------tI 330 (792)
T KOG1963|consen 291 --------------------------------LGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------TI 330 (792)
T ss_pred --------------------------------cCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------hc
Confidence 23567888888999888888888888876654321100 00
Q ss_pred eeecCCCCCccccccCcCCCCCCCccEEEecCC-CCEEEEEeCCeEEEEEcCCceeEEEEcC-----C------CCCeEE
Q 001403 773 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSASGGVISLYIVMTFKTILTIMP-----P------SPTATS 840 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~sdg~i~vwd~~~~~~~~~~~~-----~------~~~i~~ 840 (1084)
.-..+.+.. . .....+-.+.++++|- +..+..+-.|.|++||+.+.+.+..+.. + .-.+++
T Consensus 331 sgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 331 SGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred cCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 000000000 0 0013455677888884 4444444479999999987766654421 1 235788
Q ss_pred EEEcCCCCcEEEEEe--------CCC--eEEEEEcCCceee-----eeecccccCEEEEEEcCC-C-CEEEEEeCCCcEE
Q 001403 841 LAFNPHDNNVIAIGM--------DDS--TILIYNARSSEVI-----SKLEGHSKRVTGLVFSDA-L-NILVSSGGDAQIF 903 (1084)
Q Consensus 841 l~~s~~d~~~la~g~--------~dg--~i~iwd~~~~~~~-----~~l~~h~~~V~~l~~spd-~-~~l~s~s~dg~I~ 903 (1084)
++.+- .|.+++|+- .|| .+++|-......- .....|...+...+|.+. . ..+++++.||.++
T Consensus 404 v~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 404 VARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred ehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888 699999863 233 6788977654322 222358877777666642 2 3799999999999
Q ss_pred EEeCCCCceee-----eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 904 VWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 904 iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
||-+...+... ..+.....-|.. .++.++||.||..|+++.+++|.+||..+...+.........++..++|
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~---~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~~~~~~~~~ 559 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKT---PITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRNWPIAELLF 559 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccC---cccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccccchHhHhh
Confidence 99995432111 112222212332 7899999999999999999999999998843332223333455555555
Q ss_pred ccCC--CEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDC--RMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg--~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.... ...+.....+...+||+.+..+...+.
T Consensus 560 ~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s 592 (792)
T KOG1963|consen 560 TAQTQNDGALVHATQQRLSVWNLLSMSLIWNLS 592 (792)
T ss_pred hcccccccceeeccCceEehHhhhhhheecchh
Confidence 4421 122333467899999999998876433
No 97
>PTZ00421 coronin; Provisional
Probab=99.94 E-value=9.4e-25 Score=245.99 Aligned_cols=270 Identities=17% Similarity=0.198 Sum_probs=210.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc----------cceeeeecccccEeEEEeec-CCCcEEEEEEeC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD 455 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~----------~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~ 455 (1084)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|.+++|+| ++. +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3456666777888777777777777777776544321 11224779999999999999 777 8999999
Q ss_pred CCcEEEEECCCC-------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 456 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 456 d~~i~vwd~~~g-------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
|++|++||+.++ ..+..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 999999999765 3567889999999999998753 36899999999999999999888888888889999999
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe-
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ- 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~- 603 (1084)
|+|+|.+|++++. ++.|++||+++++.+..+.+|. ......+.|.+++..+++++ .|+.|++||+++..
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999999999986 7779999999999998888876 23345678999888888754 47999999998754
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccc-cccceeEEEEcC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP 666 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p 666 (1084)
.+.....+. ...+....|+++++++++++ .|+.|++||+.+++.+..... ....+..+++.|
T Consensus 250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p 313 (493)
T PTZ00421 250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP 313 (493)
T ss_pred ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence 333333322 22355667899999999887 499999999998876655433 233455555554
No 98
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.1e-25 Score=213.95 Aligned_cols=207 Identities=17% Similarity=0.229 Sum_probs=166.9
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC---c
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S 868 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---~ 868 (1084)
|.-.+..+-...++++|++++ |..|.+|++. |+.+..+......-+..+.|| +|++||+++---.|++|..-- |
T Consensus 186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG 263 (420)
T KOG2096|consen 186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDG 263 (420)
T ss_pred cccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCc
Confidence 555666677777889999998 7889999998 899988887777778899999 999999999999999998732 2
Q ss_pred -----eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee--eeeeeecCCC-CccCCCCceEEEEccCC
Q 001403 869 -----EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDG-VMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 -----~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~-~~~~~~~v~~~~~s~dg 940 (1084)
..+..|+||...|..++|||+...++|.+.||+++|||++-.... ..+.++.... .....+....++.||.|
T Consensus 264 ~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g 343 (420)
T KOG2096|consen 264 TFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG 343 (420)
T ss_pred chhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC
Confidence 235678999999999999999999999999999999998752211 1122222210 01111344589999999
Q ss_pred CEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 941 TRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
+.||++....+.++..++|+....+...|...|+++.|++||++++|++ |..+++..-..|
T Consensus 344 ~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg 404 (420)
T KOG2096|consen 344 DSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPG 404 (420)
T ss_pred cEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCc
Confidence 9999999999999999999988888888999999999999999999986 788888764443
No 99
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=6.1e-25 Score=213.11 Aligned_cols=240 Identities=19% Similarity=0.277 Sum_probs=204.8
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc--EEEEEeCCCeEEEEEcCCc
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~la~g~~dg~i~iwd~~~~ 868 (1084)
.|...++++|+ +|.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ .-. .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 59999999999 789999998 89999999999999999999999999999998 543 8899999999999999999
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 948 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d 948 (1084)
+++..+++|.+.|+.++.+|.+++-++.+.|+.++.||+-.|+......+.. ..+.+.|+|.|.+++++..
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEec
Confidence 9999999999999999999999999999999999999999877433222222 2346999999999999999
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
+.|-+|.+.+......... ..++.++.|. ++.+|++|+.|+.|++||.+++...+.+.. |..+|..+..
T Consensus 189 ~~i~i~q~d~A~v~~~i~~--~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A--------H~~RVK~i~~ 257 (362)
T KOG0294|consen 189 NKIDIYQLDNASVFREIEN--PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA--------HENRVKDIAS 257 (362)
T ss_pred cEEEEEecccHhHhhhhhc--cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec--------chhheeeeEE
Confidence 9999999988776665433 3557777775 566899999999999999999888877772 5666776655
Q ss_pred EECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1029 AAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
--.| ++.+|+++++||.|+|||+...
T Consensus 258 ~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 258 YTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EecC-CceEEEEeccCceEEEEEcccc
Confidence 4555 5789999999999999999776
No 100
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=196.37 Aligned_cols=303 Identities=14% Similarity=0.142 Sum_probs=224.9
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
....|.+++|.|.|...++++...+.++-.++.-.....+......++.+.- -....|.+.|.|.+|||
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~-----------kr~khhkgsiyc~~ws~ 99 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLC-----------KRNKHHKGSIYCTAWSP 99 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEe-----------eeccccCccEEEEEecC
Confidence 4568999999999999999999999998776532111111111111111110 11124899999999999
Q ss_pred CCCEEEEEe-CCeEEEEEcCCcee-----EEEEcCCCCCeEEEEEcCC---CCcEEEEEe-CCCeEEEEEcCCceeeeee
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKT-----ILTIMPPSPTATSLAFNPH---DNNVIAIGM-DDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~---d~~~la~g~-~dg~i~iwd~~~~~~~~~l 874 (1084)
+|++|++|+ |.+|++..++...+ -..+.-|.+.|..++|-.+ ++.+|++++ .|..|++-|..+|+....+
T Consensus 100 ~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~ 179 (350)
T KOG0641|consen 100 CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHAL 179 (350)
T ss_pred ccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceee
Confidence 999999999 68888877653322 2346668899999999642 456777765 5678999999999999999
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCC----ccCCCCceEEEEccCCCEEEEE-eCC
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRFLLV-HET 949 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~~~~s~dg~~la~~-~d~ 949 (1084)
.||.+.|.++ ++-+|-++++|+.|.+|++||+.-..+ +...... -..+..|.+++..|.|++|++| .|.
T Consensus 180 sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~-----v~~l~~~~~~~glessavaav~vdpsgrll~sg~~ds 253 (350)
T KOG0641|consen 180 SGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC-----VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADS 253 (350)
T ss_pred cCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce-----eeeccCcccCCCcccceeEEEEECCCcceeeeccCCC
Confidence 9999999886 344689999999999999999987443 3322211 1112479999999999999997 778
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEE
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1029 (1084)
...+||++.++.+..+ -.|+..|.++.|||...||++++.|..|++=|+... +...+... ... .|.+ ..+.+.
T Consensus 254 sc~lydirg~r~iq~f-~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el~~~-vv~--ehkd--k~i~~r 326 (350)
T KOG0641|consen 254 SCMLYDIRGGRMIQRF-HPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHELPIM-VVA--EHKD--KAIQCR 326 (350)
T ss_pred ceEEEEeeCCceeeee-CCCccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcCceE-EEE--eccC--ceEEEE
Confidence 8999999999998884 479999999999999999999999999999999853 22222111 111 1222 345688
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
|+|+| --+++.+.|.++.+|.+
T Consensus 327 wh~~d-~sfisssadkt~tlwa~ 348 (350)
T KOG0641|consen 327 WHPQD-FSFISSSADKTATLWAL 348 (350)
T ss_pred ecCcc-ceeeeccCcceEEEecc
Confidence 99974 77889999999999976
No 101
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=5.8e-26 Score=240.41 Aligned_cols=242 Identities=21% Similarity=0.255 Sum_probs=207.9
Q ss_pred EEEEc-CCCCEEEEEeCCCEEEEEEccCCccc---cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-
Q 001403 393 RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG- 467 (1084)
Q Consensus 393 ~v~fs-pdg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g- 467 (1084)
.+..+ |.++||.+|+.||.|++|++...... .....+..|.+.|+.++...+++ .|+++|.|-+|++|+...+
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCc
Confidence 44444 47788999999999999998754321 11336789999999999999998 7999999999999999887
Q ss_pred -ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eE--------eec-CCCCeEEEEEEcCCCCE
Q 001403 468 -SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTRMAYSANGRR 535 (1084)
Q Consensus 468 -~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~~~~s~d~~~ 535 (1084)
-++.++..|.+.|.++++. ..+...+++|+.|+.|.+||++++.. .. .+. ++...|++++.++.|..
T Consensus 107 ~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ 185 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTI 185 (735)
T ss_pred chhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceE
Confidence 6788899999999999984 23557999999999999999997633 11 122 56668999999999999
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+++|+. ++.+++||.++++.+..+.||. ..|..+..++||+.+++++.||+|++||+...+++.++..|..
T Consensus 186 ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e-- 256 (735)
T KOG0308|consen 186 IVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE-- 256 (735)
T ss_pred EEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--
Confidence 999887 4459999999999999999999 9999999999999999999999999999999999999988766
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.|.++..+|+-..+++|+.||.|..=|+.+.
T Consensus 257 ~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 257 GVWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ceEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 4899999999999999999999998888764
No 102
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=250.26 Aligned_cols=279 Identities=17% Similarity=0.241 Sum_probs=242.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+...+.+..|. +.++++++.+++|++||..++..+.. .+.||.+.|.+++|..-+. .+++|+.|.++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence 56788899998 67899999999999999999876552 3889999999999987555 899999999999999999
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
|.+.+.+.+|...|.++.. ....+++|+.|.+|++|+++++.....+.+|..+|.++..+ +.++++++. +
T Consensus 281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d 350 (537)
T KOG0274|consen 281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D 350 (537)
T ss_pred CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence 9999999999999999976 33588999999999999999999999999899999999988 889999886 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEecC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
+.|.+||+.+++++..+.+|. ..|.++.+.+. ..+++|+.|++|++||+.++ +++.++..+... +..+ ...
T Consensus 351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l--~~~ 422 (537)
T KOG0274|consen 351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSL--LLR 422 (537)
T ss_pred ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--cccc--ccc
Confidence 679999999999999999998 99999988765 89999999999999999999 899999877653 4333 345
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeeccc-cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+++|++++.|++|++||..++++++.+.+ +...+..+... ...+++++.++++++
T Consensus 423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l 478 (537)
T KOG0274|consen 423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL 478 (537)
T ss_pred cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence 88999999999999999999999999988 55666655443 345788999999999
Q ss_pred ccceeecCc
Q 001403 705 EKPLFARPS 713 (1084)
Q Consensus 705 w~~~~~~~~ 713 (1084)
||+......
T Consensus 479 ~dl~~~~~~ 487 (537)
T KOG0274|consen 479 WDLRSGTLI 487 (537)
T ss_pred EecccCchh
Confidence 998755443
No 103
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=3.5e-25 Score=225.71 Aligned_cols=281 Identities=14% Similarity=0.180 Sum_probs=228.7
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc---cee-----------eee-cCCCCCeE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FKT-----------ALV-RDPGVSVN 392 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~~-----------~~~-~~h~~~V~ 392 (1084)
+.+..|.-.|.+|+++||+++..+++.| ++|.=|++.++... .+. ..- .+|...|.
T Consensus 136 ~~~~~H~~s~~~vals~d~~~~fsask~---------g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil 206 (479)
T KOG0299|consen 136 RVIGKHQLSVTSVALSPDDKRVFSASKD---------GTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEIL 206 (479)
T ss_pred eeeccccCcceEEEeeccccceeecCCC---------cceeeeehhcCcccccccccchhhhhccCCCCcccccccceeE
Confidence 4567788899999999999999999888 88888998765532 111 011 37899999
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
+++.|+||+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+++.-..+.+
T Consensus 207 ~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vet 281 (479)
T KOG0299|consen 207 TLAVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVET 281 (479)
T ss_pred EEEEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHH
Confidence 99999999999999999999999999998776 6889999999999987666 689999999999999999999999
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
+-+|.+.|.++.... -...+.+|+.|+++++|++ .......+.++...+.|++|-.+. .+++|+. +|.|.+|
T Consensus 282 lyGHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLW 353 (479)
T KOG0299|consen 282 LYGHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALW 353 (479)
T ss_pred HhCCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEe
Confidence 999999999997643 3355566669999999999 445566777888899999997654 5666664 7779999
Q ss_pred cCCCceEeeeeeccc-cc--------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCCCCCcce
Q 001403 553 NESEGAIKRTYQGLQ-LQ--------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~-~~--------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~ 619 (1084)
++...+++.+....+ .. ...|++++..|....+++|+.+|.|++|-+..+ +++..+... ..|++
T Consensus 354 s~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNs 430 (479)
T KOG0299|consen 354 SLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNS 430 (479)
T ss_pred eecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEE
Confidence 999998887765322 11 127899999999999999999999999998877 444555433 34899
Q ss_pred EEEecCCCEEEEEE
Q 001403 620 ICFNKNGTLLAVIA 633 (1084)
Q Consensus 620 v~~s~~~~~l~~~~ 633 (1084)
++|+++|+.+++|.
T Consensus 431 l~f~~sgk~ivagi 444 (479)
T KOG0299|consen 431 LAFSNSGKRIVAGI 444 (479)
T ss_pred EEEccCCCEEEEec
Confidence 99999999766653
No 104
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.94 E-value=1.3e-24 Score=210.85 Aligned_cols=270 Identities=20% Similarity=0.313 Sum_probs=219.0
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
.+.|+.|.|+|.+..|++++|| |++++||+.......... |..++.+++|.+ ...+++|+.||.|+
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWD---------gslrlYdv~~~~l~~~~~----~~~plL~c~F~d-~~~~~~G~~dg~vr 78 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWD---------GSLRLYDVPANSLKLKFK----HGAPLLDCAFAD-ESTIVTGGLDGQVR 78 (323)
T ss_pred hhceeeEEEcCcCCcEEEEecc---------CcEEEEeccchhhhhhee----cCCceeeeeccC-CceEEEeccCceEE
Confidence 5689999999999999999999 999999998875544432 889999999998 45788999999999
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.+|++++... .+..|..+|.|+.+++-.. .+++||.|++|++||.+.......+. ....|.++.. .++.
T Consensus 79 ~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v----~g~~ 147 (323)
T KOG1036|consen 79 RYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV----SGNR 147 (323)
T ss_pred EEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec----cCCE
Confidence 9999998654 4778999999999998766 79999999999999998766555554 3447888866 4568
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc----eEeeeeeccc
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQ 567 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~ 567 (1084)
|+.|..|..|.+||+++.......... .-.+.++++.|++.-.++++- +|+|.+=.++.. +....|+.|.
T Consensus 148 LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~skkyaFkCHr 223 (323)
T KOG1036|consen 148 LVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSKKYAFKCHR 223 (323)
T ss_pred EEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhhceeEEeee
Confidence 999999999999999987765533222 337899999998888888776 444555444333 4445666665
Q ss_pred cc------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 568 LQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 568 ~~------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.. ..+|++++|+|-...|++|+.||.|.+||..+.+.+..+... ...|.+++|+.+|..||+++.
T Consensus 224 ~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 224 LSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIASS 294 (323)
T ss_pred cccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEec
Confidence 22 257899999999999999999999999999999888888654 235899999999999999876
No 105
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=2.2e-25 Score=236.04 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=234.0
Q ss_pred EEEEc-CCCceeeeecccccCccccccceEEEEEcCCccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 339 SMDFH-PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 339 ~v~~s-pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
++..+ |.++||.+|+.| |.|++|++........ ...++.|.++|..++...+|+.|++++.|-+|++
T Consensus 29 ~Lq~da~~~ryLfTgGRD---------g~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~ 99 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRD---------GIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKV 99 (735)
T ss_pred hccccCCCCceEEecCCC---------ceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEE
Confidence 33443 567889999888 9999999975443211 1236779999999999999999999999999999
Q ss_pred EEccCCccccceeeeecccccEeEEEe-ecCCCcEEEEEEeCCCcEEEEECCCCc--eeeE--------ec-cCCCcEEE
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS--------FE-GHGAPVYS 482 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~l~l~s~~~d~~i~vwd~~~g~--~~~~--------~~-~h~~~v~~ 482 (1084)
|+...+. .....+++.|.+.|.|+++ .++.. ++|+||-|+.|.+||+.+|. .+.+ +. |+..+|++
T Consensus 100 W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS 176 (735)
T KOG0308|consen 100 WNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS 176 (735)
T ss_pred eecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence 9998774 1223378899999999999 66666 89999999999999999883 3322 23 78899999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++. ++.|..+++|+.++.+++||.++.+....+.+|...|..+..++||+.+++++. +++|++||+...+++.+
T Consensus 177 LA~--N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQrCl~T 250 (735)
T KOG0308|consen 177 LAM--NQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQRCLAT 250 (735)
T ss_pred eec--CCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccceeee
Confidence 998 446689999999999999999999999999999999999999999999999986 77899999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+..|. ..|+++..+|+-.++++|+.||.|+.=|+++......+-...+ +|..+..+...+-+-+++.|+.|+-|.
T Consensus 251 ~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~rW~ 325 (735)
T KOG0308|consen 251 YIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKRWK 325 (735)
T ss_pred EEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeeccccceecC
Confidence 99988 7799999999999999999999999999988533333322222 366777776555567788899999997
Q ss_pred cCC
Q 001403 643 TPE 645 (1084)
Q Consensus 643 ~~~ 645 (1084)
..-
T Consensus 326 ~~~ 328 (735)
T KOG0308|consen 326 LEP 328 (735)
T ss_pred Ccc
Confidence 663
No 106
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=9.9e-25 Score=222.47 Aligned_cols=250 Identities=22% Similarity=0.288 Sum_probs=212.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccc--------------eeee-ecccccEeEEEeecCCCcE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI 448 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~--------------~~~l-~~h~~~V~~l~~s~d~~~l 448 (1084)
...|.-+|.+|+++||+++..+++.+++|.=|++.+|...+. ...- ++|...+.+++.|+||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 456999999999999999999999999999999998874311 1111 37888999999999999
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
+|++|+.|..|.||+.++.+.++.+.+|.+.|.+++|.- ....+++++.|+.|++|+++.....-++-+|...|..+.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999999999999999999999999953 446899999999999999998888888999999999999
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
...-++.+-+++. |.++++|++.. +....+.++. +.+.|++|-. ..++++|+.+|.|.+|++.+.+++.+.
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~ 364 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTS 364 (479)
T ss_pred hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEec-ccceeeccCCceEEEeeecccCceeEe
Confidence 8888888777765 77799999943 3444666666 7899999965 468999999999999999999888776
Q ss_pred cCCCCC----------CCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 609 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 609 ~~~~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
....+. ..|++++..|...++++|+.+|.|++|-+..+
T Consensus 365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 432111 15778999999999999999999999998876
No 107
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.94 E-value=1e-24 Score=210.26 Aligned_cols=274 Identities=16% Similarity=0.167 Sum_probs=216.7
Q ss_pred cCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 385 RDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 385 ~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
...++.|.+++||| ...++++++-|++|++|+++....+.. .....|.++|.+++|+.||. .+++|+.|+.+++||
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~wD 100 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLWD 100 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEEE
Confidence 34678999999999 556666889999999999987322222 24568999999999999998 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++ +..+..|.++|.++.|.+...-..|+|||.|++|+.||.+...+...+..++ .++++.. -..+++++..
T Consensus 101 L~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~Dv--~~pm~vVata-- 174 (347)
T KOG0647|consen 101 LASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAADV--LYPMAVVATA-- 174 (347)
T ss_pred ccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehhc--cCceeEEEec--
Confidence 99995 5677889999999999877766799999999999999999888877776655 3444433 2345555544
Q ss_pred CCCeeEEEecCCCceEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEEcCCCC-------
Q 001403 544 EGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGG------- 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~------- 613 (1084)
+..|.+|+++++... ......- ...+++++..+|....+.|+-+|.+-|..+..+ +.-..+..|..
T Consensus 175 --~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~ 250 (347)
T KOG0647|consen 175 --ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDD 250 (347)
T ss_pred --CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCc
Confidence 555999999765432 2222221 356899999999888899999999999998876 33334444432
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCcee
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 671 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~ 671 (1084)
.-.|++++|+|....|++++.||++.+||......+.....+..+|+++.|+..+.+.
T Consensus 251 VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~if 308 (347)
T KOG0647|consen 251 VYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIF 308 (347)
T ss_pred eEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEE
Confidence 2357889999999999999999999999999888888889999999999999776655
No 108
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=4.9e-25 Score=207.05 Aligned_cols=200 Identities=18% Similarity=0.225 Sum_probs=164.8
Q ss_pred CCCCccEEEecCCC-CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 793 SQEAVPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
|...|.++.+++-. +.+++++ |++|++|+...++.++++.+|...|...+|+|....++++++.|+++++||++..-.
T Consensus 103 H~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk 182 (311)
T KOG0277|consen 103 HKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK 182 (311)
T ss_pred hhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc
Confidence 45555555555533 3344445 899999999999999999999999999999998899999999999999999987433
Q ss_pred eeeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE-EEE-Ee
Q 001403 871 ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR-FLL-VH 947 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~-la~-~~ 947 (1084)
...+..|..+|.++.|+. +...|+||+.|+.|++||+..-+ ..+..+.+|.- .|..++|||...- ||+ +.
T Consensus 183 ~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r----~pl~eL~gh~~---AVRkvk~Sph~~~lLaSasY 255 (311)
T KOG0277|consen 183 FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR----TPLFELNGHGL---AVRKVKFSPHHASLLASASY 255 (311)
T ss_pred eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc----ccceeecCCce---EEEEEecCcchhhHhhhccc
Confidence 344889999999999996 77899999999999999999743 23455567765 8999999998654 455 58
Q ss_pred CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEc
Q 001403 948 ETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 948 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~ 999 (1084)
|-+++|||...+.........|+.-+..+.||+ ++.++|+++.|+.+.||+-
T Consensus 256 DmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 256 DMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 899999999977766666777899999999998 7889999999999999984
No 109
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=1.9e-24 Score=230.96 Aligned_cols=284 Identities=19% Similarity=0.296 Sum_probs=238.8
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEE-EEEcC-CCCE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VVWSP-DGSL 402 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~-v~fsp-dg~~ 402 (1084)
...+.|.+|...|..+++.++. .+++++.| +++++|+-......-. ..+.+|.+.|.+ ++|-+ |+-.
T Consensus 5 ~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd---------~t~~vw~~~~~~~l~~-~~~~~~~g~i~~~i~y~e~~~~~ 73 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVTDGV-CIISGSRD---------GTVKVWAKKGKQYLET-HAFEGPKGFIANSICYAESDKGR 73 (745)
T ss_pred eeEEEeccCccchheeEecCCe-EEeecCCC---------CceeeeeccCcccccc-eecccCcceeeccceeccccCcc
Confidence 3567899999999999977766 67777777 9999999865444332 336778888887 88886 6667
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|++|+.|++|.+|...+...+. .+.+|+..|.+++...++. ++|||.|.++++|- .+++...+.+|...|++
T Consensus 74 l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~gH~asVWA 145 (745)
T KOG0301|consen 74 LVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQGHTASVWA 145 (745)
T ss_pred eEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccCCcchheee
Confidence 9999999999999999987666 7899999999999877775 89999999999995 57777889999999999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++..+.. .++|||.|++|++| ..++...++.+|..-|+.+++-+++.++ +|+. ++.|++|++ +|+.+..
T Consensus 146 v~~l~e~---~~vTgsaDKtIklW--k~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~-~ge~l~~ 214 (745)
T KOG0301|consen 146 VASLPEN---TYVTGSADKTIKLW--KGGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL-DGEVLLE 214 (745)
T ss_pred eeecCCC---cEEeccCcceeeec--cCCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec-cCceeee
Confidence 9886543 89999999999999 4467888899999999999998887655 5554 778999998 7999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.+|. .-+.++...+++..++++++|++++||+.. ++.+.+..++. .+.++.+-++|. +++|+.||.||||.
T Consensus 215 ~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~VrVfT 286 (745)
T KOG0301|consen 215 MHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVRVFT 286 (745)
T ss_pred eeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEEEEE
Confidence 99999 889999988888999999999999999976 78888876653 488888888885 77788899999998
Q ss_pred cCCC
Q 001403 643 TPES 646 (1084)
Q Consensus 643 ~~~~ 646 (1084)
....
T Consensus 287 ~~k~ 290 (745)
T KOG0301|consen 287 VDKD 290 (745)
T ss_pred eccc
Confidence 7744
No 110
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.1e-24 Score=234.40 Aligned_cols=274 Identities=20% Similarity=0.248 Sum_probs=237.2
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
-+.|| ....||+|... .|.+|+..+++... ....+...|+++.|+++|. +|+.|..+|.|.|||..+.+.+.+
T Consensus 182 lldWs-s~n~laValg~-~vylW~~~s~~v~~---l~~~~~~~vtSv~ws~~G~--~LavG~~~g~v~iwD~~~~k~~~~ 254 (484)
T KOG0305|consen 182 LLDWS-SANVLAVALGQ-SVYLWSASSGSVTE---LCSFGEELVTSVKWSPDGS--HLAVGTSDGTVQIWDVKEQKKTRT 254 (484)
T ss_pred Hhhcc-cCCeEEEEecc-eEEEEecCCCceEE---eEecCCCceEEEEECCCCC--EEEEeecCCeEEEEehhhcccccc
Confidence 46788 45567776544 49999999987433 2223378999999999999 899999999999999999999999
Q ss_pred ecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 473 FEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 473 ~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
+.+ |...|.+++|. +..+.+|+.||.|..+|++..+.... +..|...|..+.|++|++++|+++. |+.+.
T Consensus 255 ~~~~h~~rvg~laW~----~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgn----DN~~~ 326 (484)
T KOG0305|consen 255 LRGSHASRVGSLAWN----SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGN----DNVVF 326 (484)
T ss_pred ccCCcCceeEEEecc----CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCC----ccceE
Confidence 998 99999999994 46899999999999999998877665 8889999999999999999999987 77799
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCC-CEEEEE--ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|||....++...+..|. ..|.+++|+|-. ..||+| +.|+.|++||..+|..+..+.... .|.++.|++..+
T Consensus 327 Iwd~~~~~p~~~~~~H~---aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgs---QVcsL~Wsk~~k 400 (484)
T KOG0305|consen 327 IWDGLSPEPKFTFTEHT---AAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGS---QVCSLIWSKKYK 400 (484)
T ss_pred eccCCCccccEEEeccc---eeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCC---ceeeEEEcCCCC
Confidence 99998889999999998 999999999974 566664 489999999999999999987554 489999999887
Q ss_pred EEEEE--ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccc
Q 001403 628 LLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE 705 (1084)
Q Consensus 628 ~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w 705 (1084)
-++++ ..++.|.||+..+.+.+..+.+|..+|..++++ |||..+++++.|.++++|
T Consensus 401 Ei~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~S----------------------Pdg~~i~t~a~DETlrfw 458 (484)
T KOG0305|consen 401 ELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALS----------------------PDGETIVTGAADETLRFW 458 (484)
T ss_pred EEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEEC----------------------CCCCEEEEecccCcEEec
Confidence 66654 457899999999999999999999999999997 678899999999999999
Q ss_pred ccee
Q 001403 706 KPLF 709 (1084)
Q Consensus 706 ~~~~ 709 (1084)
++-.
T Consensus 459 ~~f~ 462 (484)
T KOG0305|consen 459 NLFD 462 (484)
T ss_pred cccC
Confidence 9753
No 111
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=207.81 Aligned_cols=251 Identities=21% Similarity=0.330 Sum_probs=186.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
.++||...|++++||.||++||+++.|++|+||++..-.. ++...++ +--+.++|+||-+. +++++-...
T Consensus 81 ~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~----dhpT~V~FapDc~s-~vv~~~~g~ 155 (420)
T KOG2096|consen 81 VLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEY----DHPTRVVFAPDCKS-VVVSVKRGN 155 (420)
T ss_pred hhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccC----CCceEEEECCCcce-EEEEEccCC
Confidence 3889999999999999999999999999999999986321 2221111 23578899999986 566666677
Q ss_pred cEEEEECCC---CceeeE--------e-ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEE
Q 001403 458 TIKVWDAVT---GSRTYS--------F-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCT 525 (1084)
Q Consensus 458 ~i~vwd~~~---g~~~~~--------~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~ 525 (1084)
++++|.+.. |..... | +.|...+..+.. .+++.+|++++.|..|.+|++. ++.+..+......-+
T Consensus 156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGi--A~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGI--AGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEEEEeeecccCCCCcccccccccccchhcccceEEEee--cCCceEEEEecCCCcEEEEecC-Cceeeeecccccccc
Confidence 899997642 222111 1 235566666665 5577899999999999999998 666667766666777
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCC---Cc-----eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNES---EG-----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~---~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
..+.||+|+++++++...+ |.+|.+- .| ..+..+.||. ..|..++|+++..++++.+.||+++||
T Consensus 233 ~aavSP~GRFia~~gFTpD----VkVwE~~f~kdG~fqev~rvf~LkGH~---saV~~~aFsn~S~r~vtvSkDG~wriw 305 (420)
T KOG2096|consen 233 DAAVSPDGRFIAVSGFTPD----VKVWEPIFTKDGTFQEVKRVFSLKGHQ---SAVLAAAFSNSSTRAVTVSKDGKWRIW 305 (420)
T ss_pred ceeeCCCCcEEEEecCCCC----ceEEEEEeccCcchhhhhhhheeccch---hheeeeeeCCCcceeEEEecCCcEEEe
Confidence 8899999999999998554 9999753 22 2345678888 899999999999999999999999999
Q ss_pred ECCC-------CeEEEEE--cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 598 DMNK-------VQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 598 d~~~-------~~~~~~~--~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
|.+- .+.++.. ..+.....-..++.+|+|..||+... ..+.++..++++..
T Consensus 306 dtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~g-s~l~~~~se~g~~~ 365 (420)
T KOG2096|consen 306 DTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFG-SDLKVFASEDGKDY 365 (420)
T ss_pred eccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecC-CceEEEEcccCccc
Confidence 9752 1222222 11222223348899999998887654 57888887766444
No 112
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=2.4e-24 Score=217.45 Aligned_cols=281 Identities=17% Similarity=0.234 Sum_probs=241.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..+.++...|....+++|+.|.++.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||......
T Consensus 220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s 294 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS 294 (506)
T ss_pred CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence 467788888887899999999999999999987766 7889999999999999998 79999999999999998888
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
.......|..+|+.+..++ .|.||++++.||+..+.|++++......... .-.+++.+|+|||..+.++.. +
T Consensus 295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d 368 (506)
T KOG0289|consen 295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D 368 (506)
T ss_pred Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence 8888899999999999976 5579999999999999999999887766553 346899999999999999876 7
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+.|.+||+.++..+..|.+|. ++|..++|+.+|-+++++++|+.|++||++.-+..+++...... .+.++.|.+.|
T Consensus 369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG 444 (506)
T KOG0289|consen 369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG 444 (506)
T ss_pred ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence 789999999999999999998 99999999999999999999999999999999988888876654 68999999999
Q ss_pred CEEEEEECCCeEEEEEcC--CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 627 TLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.+|+.++.+=.|++++-. +..++..+..|.+..+++.|. ....++++++.|..+++
T Consensus 445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~ 502 (506)
T KOG0289|consen 445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL 502 (506)
T ss_pred CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence 999999877666666644 346666677777777777776 44556677777666555
Q ss_pred cc
Q 001403 705 EK 706 (1084)
Q Consensus 705 w~ 706 (1084)
+.
T Consensus 503 ~a 504 (506)
T KOG0289|consen 503 YA 504 (506)
T ss_pred ee
Confidence 43
No 113
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=1.4e-25 Score=221.27 Aligned_cols=283 Identities=14% Similarity=0.218 Sum_probs=233.8
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
.|.||.+.|.|++=.|..-. .+++|+.||.|++||+.+..++.++..|.+.|..+++.. ..+++++.|.+|+.|-
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998622 699999999999999999999999999999999999954 5789999999999998
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-E
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-L 586 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~ 586 (1084)
++.. ...++. ....+..+.-+..+..+++||. .|.|||.....++..+.... +.+.++.|+|....+ +
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa 204 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA 204 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence 7763 222222 2334556666667788888864 39999999988998888766 789999999987655 4
Q ss_pred EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEc
Q 001403 587 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~ 665 (1084)
+++.|+.|.+||++.+.+++.+...-. -+.++|+|++-.++++..|..++.+|+... .++....+|...|..+.|+
T Consensus 205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs 281 (433)
T KOG0268|consen 205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS 281 (433)
T ss_pred eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence 566999999999999999988765443 578999999889999999999999999865 6777888899888888887
Q ss_pred CCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEee
Q 001403 666 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 745 (1084)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~ 745 (1084)
|.|+-+++|+.|.+|+||....+..-..+... .-..|.++.||.|.+++++|+
T Consensus 282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-----RMq~V~~Vk~S~Dskyi~SGS 334 (433)
T KOG0268|consen 282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-----RMQHVFCVKYSMDSKYIISGS 334 (433)
T ss_pred ----------------------CCcchhccccccceEEEeecCCCcchhhhhHh-----hhheeeEEEEeccccEEEecC
Confidence 66888999999999999998754433332211 345789999999999999999
Q ss_pred cCCceEEeecc
Q 001403 746 SNGVHLMWRWP 756 (1084)
Q Consensus 746 ~dg~i~vw~~~ 756 (1084)
.|+.|++|.-.
T Consensus 335 dd~nvRlWka~ 345 (433)
T KOG0268|consen 335 DDGNVRLWKAK 345 (433)
T ss_pred CCcceeeeecc
Confidence 99999999854
No 114
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.3e-23 Score=203.87 Aligned_cols=243 Identities=17% Similarity=0.253 Sum_probs=204.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|...|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|+
T Consensus 39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~ 113 (362)
T KOG0294|consen 39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWR 113 (362)
T ss_pred ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEEE
Confidence 56799999999997 8999999999999999999886655 677899999999999886422599999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.....++.++++|.+.|+.++++|++ ++.++.+.|+.+++||+-.++.-+....... ...+.|+|.|.+++.++
T Consensus 114 ~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~--- 187 (362)
T KOG0294|consen 114 VGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG--- 187 (362)
T ss_pred cCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe---
Confidence 99999999999999999999998854 7889999999999999988877666554432 33499999999888876
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE-
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF- 622 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~- 622 (1084)
...|-+|.+.+......+... ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. .|..+.+
T Consensus 188 --~~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~ 258 (362)
T KOG0294|consen 188 --RNKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASY 258 (362)
T ss_pred --ccEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEE
Confidence 445999998887766555443 246666664 567999999999999999999888888887754 6887774
Q ss_pred -ecCCCEEEEEECCCeEEEEEcCCC
Q 001403 623 -NKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 623 -s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.|++.+|++++.||.|++||+...
T Consensus 259 ~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 259 TNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ecCCceEEEEeccCceEEEEEcccc
Confidence 467899999999999999999876
No 115
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=1.6e-21 Score=215.49 Aligned_cols=280 Identities=13% Similarity=0.180 Sum_probs=235.3
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
.|+..-+.++|.|+|++|++++.||.|++|+.... +... .+.-+...|.+++-. +. .|++|+.+++|.+|..
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~--s~--~f~~~s~~~tv~~y~f 83 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACY--SN--HFLTGSEQNTVLRYKF 83 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeec--cc--ceEEeeccceEEEeeC
Confidence 48889999999999999999999999999998776 3333 333377778877764 34 6999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
..+..-..+....-++..+++ +.+|.+++.||.|-.|++-+.........+.++..+|.++.|+|++++||+.+.
T Consensus 84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~--- 158 (933)
T KOG1274|consen 84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC--- 158 (933)
T ss_pred CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence 988876666667788999999 567889999999999999999999999999999999999999999999999876
Q ss_pred CCeeEEEecCCCceEeeeeeccccc-----cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~-----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+|.|++||+.++.+...+.+.... ...+..++|+|++..+++.+.|+.|++|+..+.+....+........+..
T Consensus 159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~ 237 (933)
T KOG1274|consen 159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD 237 (933)
T ss_pred -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence 777999999999888777654311 23467789999999999999999999999999999998887655555889
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
+.|+|+|+|||+++.+|.|.|||..+.. .......|.+++|.|+...+..-...|...+
T Consensus 238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~ 296 (933)
T KOG1274|consen 238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGTLGV 296 (933)
T ss_pred EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecccccc
Confidence 9999999999999999999999999721 1445667999999999888766555554333
No 116
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.93 E-value=1.5e-23 Score=211.84 Aligned_cols=284 Identities=15% Similarity=0.181 Sum_probs=241.8
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
..+.++...|....+++|..| +++.++|........ ++.||...|+.+.|+|+...+++++.|..|+|
T Consensus 220 pgi~ald~~~s~~~ilTGG~d---------~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~v 287 (506)
T KOG0289|consen 220 PGITALDIIPSSSKILTGGED---------KTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLDTVITASADEIIRV 287 (506)
T ss_pred CCeeEEeecCCCCcceecCCC---------CceEEEecchhhhhh---hccCcceEEEEEEeccchhheeecCCcceEEe
Confidence 378888888888889998777 899999998765553 38999999999999999999999999999999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc--CCCcEEEEeecccCCCc
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIH 492 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~--h~~~v~~~~~~~~~~~~ 492 (1084)
|......... ....|.++|+.+...|.|+ ||++++.|++..+.|+++|..+..... ..-.+++.+|+| ||.
T Consensus 288 ws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp--DgL 360 (506)
T KOG0289|consen 288 WSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP--DGL 360 (506)
T ss_pred eccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC--Cce
Confidence 9998776444 6778999999999999999 899999999999999999998877654 234578889966 778
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
++.+|..||.|++||+.+......+.+|.++|..++|+.+|-+|++++. ++.|.+||++.-+...++.... ...
T Consensus 361 ifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~l~~--~~~ 434 (506)
T KOG0289|consen 361 IFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQLDE--KKE 434 (506)
T ss_pred EEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceeeccc--ccc
Confidence 9999999999999999999999999999999999999999999999986 5559999999888777777665 357
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+.++.|.+.|.+++.++.|=.|++++-.+.+.......+.+......+.|....+++++++.|..++++.+
T Consensus 435 v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 435 VNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 99999999999999998887788777555444333333333335788999999999999999999888754
No 117
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1e-24 Score=203.77 Aligned_cols=252 Identities=20% Similarity=0.331 Sum_probs=209.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~v 461 (1084)
...|++.|..+...--|++||+++.|++|+|+.+..+.....+.+|.||.++|..++|.. -|. +|++++.||.|.|
T Consensus 7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVIi 84 (299)
T KOG1332|consen 7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVII 84 (299)
T ss_pred hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEEE
Confidence 456999999999888999999999999999999998776667779999999999999987 677 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCC---C
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---G 533 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d---~ 533 (1084)
|.-+.|+ ..+....|...|++++|.|.+-|-.|++++.||.|.+.+++.... ......|.-.+.+++|.|- |
T Consensus 85 Wke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g 164 (299)
T KOG1332|consen 85 WKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPG 164 (299)
T ss_pred EecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCc
Confidence 9987774 346678899999999999999999999999999999999887632 3345677778999999986 5
Q ss_pred -----------CEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCC----CEEEEEECCCcEEE
Q 001403 534 -----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIKI 596 (1084)
Q Consensus 534 -----------~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~dg~i~i 596 (1084)
+.|++++. |+.|.||+..+++ .-+.+.+|. +-|+.++|.|.- .+++++++||++.|
T Consensus 165 ~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~viI 237 (299)
T KOG1332|consen 165 SLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVII 237 (299)
T ss_pred cccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEEE
Confidence 56888876 7779999988763 334577887 999999999974 57899999999999
Q ss_pred EECCCC--eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 597 WDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 597 wd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|..... ....++ .+.....+..+.||..|+.|++++.|+.+.+|.-..
T Consensus 238 wt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 238 WTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred EEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 976532 111222 222334588999999999999999999999997553
No 118
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.93 E-value=5.3e-25 Score=217.16 Aligned_cols=293 Identities=12% Similarity=0.164 Sum_probs=232.6
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
.+-+..|.||.+.|.|+|=+|.. ..+|+|+.| |.|+|||+++...... +..|.+.|..+++.. ..
T Consensus 56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~D---------G~VkiWnlsqR~~~~~---f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCD---------GEVKIWNLSQRECIRT---FKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred ccchhhccccccccchhhcCcchhhhhhccccC---------ceEEEEehhhhhhhhe---eecccCceeeEEecc--cc
Confidence 45567789999999999999998 899999988 9999999987554433 667999999999997 77
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
+++++.|.+|+.|.++.. ...++.+ ...+..+.-+..+. .++|||.+ |.|||.....++..+.--.+.|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe~--i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGEQ--IDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCce--eeecccccCCccceeecCCCceeE
Confidence 889999999999998873 2223333 23466666666666 68898865 999999999999999888889999
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKR 561 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~ 561 (1084)
+.|+|... ..|++++.|+.|.+||++...++..... ......++|+|.+-.++++.. +..++.+|++. .+.+.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhhhhcccch
Confidence 99988754 6889999999999999998877654322 224467899996655666543 67799999875 34555
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+.+|. ..|..+.|+|.|+-+++||.|.+|+||....+.--..... .....|.+|.||.|.+++++|++|+.|++|
T Consensus 267 v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSdd~nvRlW 342 (433)
T KOG0268|consen 267 VHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSDDGNVRLW 342 (433)
T ss_pred hhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCCCcceeee
Confidence 666666 8999999999999999999999999999987654433321 122358999999999999999999999999
Q ss_pred EcCCCCee
Q 001403 642 ETPESNSV 649 (1084)
Q Consensus 642 d~~~~~~~ 649 (1084)
.....+.+
T Consensus 343 ka~Asekl 350 (433)
T KOG0268|consen 343 KAKASEKL 350 (433)
T ss_pred ecchhhhc
Confidence 88755433
No 119
>PTZ00420 coronin; Provisional
Probab=99.93 E-value=5.5e-23 Score=232.02 Aligned_cols=248 Identities=12% Similarity=0.171 Sum_probs=189.6
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCc--------eeeEeccC
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH 476 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~--------~~~~~~~h 476 (1084)
|+.++.|++|+..... ....+.+|.+.|.+++|+|+ +. +|++|+.|++|+|||+.++. .+..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 5567889999987653 33478899999999999997 56 89999999999999998642 34567899
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
...|.+++|+|... .++++++.||+|++||+.++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999977532 356799999999999999888766665 4568999999999999998875 66799999999
Q ss_pred ceEeeeeeccccccCce-----EEEEEcCCCCEEEEEECCC----cEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCC
Q 001403 557 GAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
++.+..+.+|. +.+ ....|++++.++++++.|+ .|+|||+++ ++++.....+.....+......++|
T Consensus 199 g~~i~tl~gH~---g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg 275 (568)
T PTZ00420 199 QEIASSFHIHD---GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTG 275 (568)
T ss_pred CcEEEEEeccc---CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCC
Confidence 99999998887 433 3334568999999988664 799999985 6677666555443333333334568
Q ss_pred CEEEEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCC
Q 001403 627 TLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI 667 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~ 667 (1084)
.++++|..|+.|++|++..+.....-. .+..++.+++|.|.
T Consensus 276 ~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk 317 (568)
T PTZ00420 276 LIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK 317 (568)
T ss_pred CEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence 899999999999999998763222111 13345556666653
No 120
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=7e-24 Score=204.86 Aligned_cols=298 Identities=14% Similarity=0.174 Sum_probs=243.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+++.+.||.+.||.++.-.....+.+++.| .+.+||.++++....+ +.||.+.|.+++|++.+.++
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~tqpi~gtASAD---------hTA~iWs~Esg~CL~~---Y~GH~GSVNsikfh~s~~L~ 205 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADSTQPICGTASAD---------HTARIWSLESGACLAT---YTGHTGSVNSIKFHNSGLLL 205 (481)
T ss_pred EeehhhhcccccceeeehhhcCCcceeecccc---------cceeEEeeccccceee---ecccccceeeEEeccccceE
Confidence 45667789999999999999988999999888 9999999999888766 78999999999999999999
Q ss_pred EEEeCCCEEEEEEc------cC--------Cc----------------------c-ccceeeeecccccEeEEEeecCCC
Q 001403 404 GVAYSKHIVQLYAY------HG--------GS----------------------D-ARQQLEIDAHVGNVNDLAFSAPCK 446 (1084)
Q Consensus 404 as~~~dg~v~iwd~------~~--------~~----------------------~-~~~~~~l~~h~~~V~~l~~s~d~~ 446 (1084)
++++.|++..||.. .. ++ . ..++..+.+|.+.|.+..|...|+
T Consensus 206 lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~ 285 (481)
T KOG0300|consen 206 LTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ 285 (481)
T ss_pred EEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc
Confidence 99999999999962 11 00 0 123457889999999999999999
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEE
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCT 525 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~ 525 (1084)
-+++++.|.+..+||+++|..+..+.||....+.++-+|. ..++++.+.|-+.++||++..- ....+.+|...|+
T Consensus 286 --Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVT 361 (481)
T KOG0300|consen 286 --QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVT 361 (481)
T ss_pred --eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeeccccccee
Confidence 6999999999999999999999999999999999988764 4789999999999999998433 3567899999999
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
++.|..|.+ +++++. +.+|.+||+++. ..+.++... .+++.++.+..++.++.--++..|++||+...++
T Consensus 362 S~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~Rl 432 (481)
T KOG0300|consen 362 SVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRL 432 (481)
T ss_pred EEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEEEecCCCcc
Confidence 999987765 556553 778999999874 345555543 4889999998888888888999999999975544
Q ss_pred EEEE--cCCCCCCCcceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001403 605 LTTI--DAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES 646 (1084)
Q Consensus 605 ~~~~--~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.... ...++..-|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 433 aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 433 ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 3322 122333358899998643 45788889999999987653
No 121
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1e-23 Score=203.81 Aligned_cols=331 Identities=16% Similarity=0.231 Sum_probs=244.4
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
.++.+.||. +.|+.++.....+.+.+++.|.+.+||.+++|.++.++.+|.+ .|+++.|++.+.++++++.|++-
T Consensus 140 lvre~~GHk---DGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G--SVNsikfh~s~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHK---DGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTG--SVNSIKFHNSGLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccc---cceeeehhhcCCcceeecccccceeEEeeccccceeeeccccc--ceeeEEeccccceEEEccCCcch
Confidence 345677887 8899988877778888899999999999999999999997755 69999999999999999999999
Q ss_pred EEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 639 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
.||...-.-++..-. ...-.++.. . .++..
T Consensus 215 HIW~~av~~~vP~~~------------------------------------a~~~hSsEe--E-----------~e~sD- 244 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNN------------------------------------APSDHSSEE--E-----------EEHSD- 244 (481)
T ss_pred HHHHHhhcCcCCCCC------------------------------------CCCCCCchh--h-----------hhccc-
Confidence 999744221110000 000000000 0 00000
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
.| .+-..-....||. +|++ ....++ +|...|.
T Consensus 245 -----e~-~~d~d~~~~sD~~---------tiRv-------------------------------Pl~~lt--gH~~vV~ 276 (481)
T KOG0300|consen 245 -----EH-NRDTDSSEKSDGH---------TIRV-------------------------------PLMRLT--GHRAVVS 276 (481)
T ss_pred -----cc-ccccccccccCCc---------eeee-------------------------------eeeeee--ccccceE
Confidence 00 0000000011111 2221 111122 4899999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecc
Q 001403 799 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEG 876 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~ 876 (1084)
+..|-..|+.+++++ |.+..+||+++|+.+..+.+|....+.++-+| ..+++++.+.|.+.++||+... ..+..|+|
T Consensus 277 a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 277 ACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred ehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCC-cceEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999999999999 89999999999999999999999999999999 8999999999999999999853 45788999
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE 955 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd 955 (1084)
|.+.|+++.|.-| ..+++|+.|.+|+|||+..... .+.+... ..++..++.+..+..||.- .+..|++||
T Consensus 356 HtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRs----plATIRt----dS~~NRvavs~g~~iIAiPhDNRqvRlfD 426 (481)
T KOG0300|consen 356 HTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRS----PLATIRT----DSPANRVAVSKGHPIIAIPHDNRQVRLFD 426 (481)
T ss_pred cccceeEEEEecC-CceeecCCCceEEEeeeccccC----cceeeec----CCccceeEeecCCceEEeccCCceEEEEe
Confidence 9999999999876 5688999999999999987331 2222222 1358899999999999996 556899999
Q ss_pred cCCcceee---EeecCCCCCEEEEEEccCC--CEEEEEeCCCcEEEEEcCCC
Q 001403 956 AEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 956 ~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
+...+..+ .-..+|..-|+|++|+.+. .-|++++-|..+.-|++..-
T Consensus 427 lnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 427 LNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred cCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 97443322 2235789999999999764 45899999999999998653
No 122
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.92 E-value=1.1e-23 Score=225.11 Aligned_cols=279 Identities=15% Similarity=0.200 Sum_probs=232.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeE-EEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-LAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+.||...|..+++.++. .+++++.||++++|+-..++-+. ...+.+|.+-|.+ +++-+..+. .+++|+.|.+|.+
T Consensus 9 ~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~-~~~~~~~~g~i~~~i~y~e~~~~-~l~~g~~D~~i~v 85 (745)
T KOG0301|consen 9 ELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLE-THAFEGPKGFIANSICYAESDKG-RLVVGGMDTTIIV 85 (745)
T ss_pred EeccCccchheeEecCCe-EEeecCCCCceeeeeccCccccc-ceecccCcceeeccceeccccCc-ceEeecccceEEE
Confidence 478999999999987655 89999999999999987765443 2356778887777 888753332 5999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
|...+..+++.+.+|...|.+++. ..++ .+++||.|.++++|. .++....+.+|...|++++.-|++ .+++++.
T Consensus 86 ~~~~~~~P~~~LkgH~snVC~ls~--~~~~-~~iSgSWD~TakvW~--~~~l~~~l~gH~asVWAv~~l~e~-~~vTgsa 159 (745)
T KOG0301|consen 86 FKLSQAEPLYTLKGHKSNVCSLSI--GEDG-TLISGSWDSTAKVWR--IGELVYSLQGHTASVWAVASLPEN-TYVTGSA 159 (745)
T ss_pred EecCCCCchhhhhccccceeeeec--CCcC-ceEecccccceEEec--chhhhcccCCcchheeeeeecCCC-cEEeccC
Confidence 999999999999999999999986 3343 499999999999994 445666789999999999999998 6667765
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
|..|++|.- ++.+++|.+|. +.|+.+++-++ ..+++++.||.|+.|++ +|+.+....+|.. .++++.
T Consensus 160 ----DKtIklWk~--~~~l~tf~gHt---D~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn--~vYsis 226 (745)
T KOG0301|consen 160 ----DKTIKLWKG--GTLLKTFSGHT---DCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTN--FVYSIS 226 (745)
T ss_pred ----cceeeeccC--Cchhhhhccch---hheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccce--EEEEEE
Confidence 677999986 88899999998 99999999876 47899999999999999 7788877776644 689999
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK 701 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~ 701 (1084)
...++..+++++.|++++||+.. .+.+.+.-+...++++.+-+. | -+++|++||.
T Consensus 227 ~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~N----------------------g-DIvvg~SDG~ 281 (745)
T KOG0301|consen 227 MALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLN----------------------G-DIVVGGSDGR 281 (745)
T ss_pred ecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeC----------------------C-CEEEeccCce
Confidence 88888999999999999999987 677777777778887776532 2 2778999999
Q ss_pred cccccce
Q 001403 702 SEVEKPL 708 (1084)
Q Consensus 702 i~~w~~~ 708 (1084)
+|+|...
T Consensus 282 VrVfT~~ 288 (745)
T KOG0301|consen 282 VRVFTVD 288 (745)
T ss_pred EEEEEec
Confidence 9999865
No 123
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.1e-21 Score=213.34 Aligned_cols=504 Identities=15% Similarity=0.162 Sum_probs=321.7
Q ss_pred eEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceE
Q 001403 437 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 437 ~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
..-.||+|++ .++.+. +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||........
T Consensus 20 ~~avfSnD~k--~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Llk 96 (792)
T KOG1963|consen 20 SPAVFSNDAK--FLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELLK 96 (792)
T ss_pred cccccccCCc--EEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEEE
Confidence 3457999999 444333 678999999999999999999999999999877654 678899999999999999888777
Q ss_pred eecCCCCeEEEEEEcC---CCCEEEEEeeCCCCCeeEEEecCCCceEe-------------eeeeccccccCceEEEEEc
Q 001403 516 DYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-------------RTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~~~~~-------------~~~~~~~~~~~~v~~~~~s 579 (1084)
.+..... +..+.+.| +-...+..+.. + ...+........... .....+. .-.++.++
T Consensus 97 t~~~~~~-v~~~~~~~~~a~~s~~~~~s~~-~-~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~----~~~~I~~~ 169 (792)
T KOG1963|consen 97 TFDNNLP-VHALVYKPAQADISANVYVSVE-D-YSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ----EPKSIVDN 169 (792)
T ss_pred EEecCCc-eeEEEechhHhCccceeEeecc-c-ceeeeecccccccceeeeEeeeccccchhhhhhhc----CCccEEEc
Confidence 6655443 22222211 11112211110 0 000111111111111 1111111 13567788
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEc---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS 656 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 656 (1084)
+.+.+....- +..+.+|+..++. ..... ...+.-.+.+++++|+++++|++..||.|.+|.--.. ....
T Consensus 170 ~~ge~~~i~~-~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~~ 241 (792)
T KOG1963|consen 170 NSGEFKGIVH-MCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDDS 241 (792)
T ss_pred CCceEEEEEE-eeeEEEEEecccc-eeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------cccc
Confidence 8776655544 4568888887754 11111 0112223789999999999999999999999974421 0000
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEec
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 736 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~ 736 (1084)
-+.++|.- |...|.+++|++
T Consensus 242 -------------------------------------------~t~t~lHW-----------------H~~~V~~L~fS~ 261 (792)
T KOG1963|consen 242 -------------------------------------------ETCTLLHW-----------------HHDEVNSLSFSS 261 (792)
T ss_pred -------------------------------------------ccceEEEe-----------------cccccceeEEec
Confidence 01111111 567899999999
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG 815 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg 815 (1084)
+|.+|++|+..|.+.+|.+..++. .. ++. -.++|..+.+|||+.+.+... |+
T Consensus 262 ~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LPR--Lgs~I~~i~vS~ds~~~sl~~~DN 314 (792)
T KOG1963|consen 262 DGAYLLSGGREGVLVLWQLETGKK----------------------QF---LPR--LGSPILHIVVSPDSDLYSLVLEDN 314 (792)
T ss_pred CCceEeecccceEEEEEeecCCCc----------------------cc---ccc--cCCeeEEEEEcCCCCeEEEEecCc
Confidence 999999999999999988765421 11 222 577899999999999887765 89
Q ss_pred eEEEEEcCCceeEEEEcCC-----------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc--------
Q 001403 816 VISLYIVMTFKTILTIMPP-----------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-------- 876 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~-----------~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-------- 876 (1084)
.|.+..+.+.+...++.+. .+-.+.++++| .-+.++..+..|.|.+||+-+.+.+..+..
T Consensus 315 qI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~ 393 (792)
T KOG1963|consen 315 QIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDG 393 (792)
T ss_pred eEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCC
Confidence 9999988776665554432 23457888999 677888889999999999988766655431
Q ss_pred ---cccCEEEEEEcCCCCEEEEEeC--------CC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC-E
Q 001403 877 ---HSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT-R 942 (1084)
Q Consensus 877 ---h~~~V~~l~~spd~~~l~s~s~--------dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~-~ 942 (1084)
+.-.+++++.+-.|.+++|.-. || .+++|-.................|.. ..+..+.+++... .
T Consensus 394 ~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~--~~vat~~~~~~rs~~ 471 (792)
T KOG1963|consen 394 DVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN--AFVATIFLNPTRSVR 471 (792)
T ss_pred cceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc--eeEEEEEecCcccce
Confidence 3345888888889999998642 33 47889877644322222222223332 1233444444433 5
Q ss_pred EEE-EeCCeEEEEEcCCcc----------eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC-CceeEEecc
Q 001403 943 FLL-VHETHLAIYEAEELT----------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILS 1010 (1084)
Q Consensus 943 la~-~~d~~i~vwd~~~~~----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~-~~~~~~~~~ 1010 (1084)
.++ +.||.++||-....+ |... -.-|..++++++||.||..|+. +.|++|.+||..+ .++.+....
T Consensus 472 ~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~~~ 549 (792)
T KOG1963|consen 472 CVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTEGS 549 (792)
T ss_pred eEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccccc
Confidence 555 689999999883222 1111 1236889999999999976664 5788999999999 555544432
Q ss_pred ccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 1011 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1011 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
..+...+ . +..+-.+. ...++....+.+.+|++..-.-.|
T Consensus 550 ~~~~~~~-----~--~~~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w 589 (792)
T KOG1963|consen 550 RNWPIAE-----L--LFTAQTQN--DGALVHATQQRLSVWNLLSMSLIW 589 (792)
T ss_pred cccchHh-----H--hhhccccc--ccceeeccCceEehHhhhhhheec
Confidence 1111111 0 11122222 234445567889999998877767
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=8.7e-24 Score=216.52 Aligned_cols=285 Identities=15% Similarity=0.200 Sum_probs=231.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~d 409 (1084)
.|.+-|.++++|...+++.+| |+ |-|+|||+...........+. ...+-|.++.++|||+.|++|+.-
T Consensus 417 ~HGEvVcAvtIS~~trhVyTg------Gk----gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGea 486 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTG------GK----GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEA 486 (705)
T ss_pred ccCcEEEEEEecCCcceeEec------CC----CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccc
Confidence 677789999999999999997 33 889999998654433322121 235689999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.++.|||+..... +...++..-.-...+++.+||.+ +.+++..||.|.|||+.+...++.|.||.+.+.||.+ +.
T Consensus 487 stlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdi--s~ 561 (705)
T KOG0639|consen 487 STLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDI--SK 561 (705)
T ss_pred ceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEe--cC
Confidence 9999999987643 11123434344677899999999 8889999999999999999999999999999999999 56
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
||..|-||+.|.+||.||++.+........ ...|.++..+|.+.+++++-. ++.+.+.... +.....+..|.
T Consensus 562 dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp~kyqlhlhe-- 633 (705)
T KOG0639|consen 562 DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KPEKYQLHLHE-- 633 (705)
T ss_pred CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cccceeecccc--
Confidence 889999999999999999998776554432 347889999999999999875 5557766643 33344455555
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|.++.|++.|+++++.+.|..+..|...-|..+...... ..|.++.++.|.+++++|+.|....+|.+
T Consensus 634 -ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE~---SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 634 -SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred -cEEEEEEecccCceeeecCchhhhhhccCccccceeecccc---CcceeeeeccCceEEEecCCCcceEEEEE
Confidence 88999999999999999999999999999988877776533 45899999999999999999988888764
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=3.1e-22 Score=221.17 Aligned_cols=284 Identities=17% Similarity=0.183 Sum_probs=219.3
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
|....+.++|.|+|..|++++.||.|++|+....... ..... .+...|.+++.
T Consensus 12 ht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~---------------------P~ti~----~~g~~v~~ia~-- 64 (933)
T KOG1274|consen 12 HTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE---------------------PETID----ISGELVSSIAC-- 64 (933)
T ss_pred ccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC---------------------Cchhh----ccCceeEEEee--
Confidence 6777899999999999999999999999986543110 11100 03445555555
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
++.++++++ +++|.+|.+.+++.-..+....-++.+++|+. +|+++|.|++|-.|++-++.+......+++|.++|.+
T Consensus 65 ~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~ 143 (933)
T KOG1274|consen 65 YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQ 143 (933)
T ss_pred cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCceee
Confidence 455777777 79999999998887766666677899999999 9999999999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE-EEeCCeEEEEEcCCccee
Q 001403 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCL 962 (1084)
Q Consensus 884 l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la-~~~d~~i~vwd~~~~~~~ 962 (1084)
+.|+|++.+||+.+-||.|++||++++.+.....--........+..+..++|+|+|..+| .+.|+.|.+|+..+.+..
T Consensus 144 l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~ 223 (933)
T KOG1274|consen 144 LSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQ 223 (933)
T ss_pred eeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeh
Confidence 9999999999999999999999999876433211111111111124578899999955555 489999999999999988
Q ss_pred eEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 963 KQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 963 ~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
..+...+ ...+..+.|||+|+|||+++.||.|.|||+++-+. |.-.-..++++|.|+ ++-+-..
T Consensus 224 f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~--------------~~~~~~Vc~~aw~p~-~n~it~~ 288 (933)
T KOG1274|consen 224 FKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER--------------HEFKRAVCCEAWKPN-ANAITLI 288 (933)
T ss_pred eeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh--------------ccccceeEEEecCCC-CCeeEEE
Confidence 8877665 34499999999999999999999999999998211 111123457889984 6666666
Q ss_pred eCCCcEEEEc
Q 001403 1042 LTNGEVYVIE 1051 (1084)
Q Consensus 1042 ~~dg~v~vw~ 1051 (1084)
...|...+|.
T Consensus 289 ~~~g~~~~~~ 298 (933)
T KOG1274|consen 289 TALGTLGVSP 298 (933)
T ss_pred eeccccccCh
Confidence 6666666554
No 126
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.91 E-value=2.3e-21 Score=205.18 Aligned_cols=492 Identities=11% Similarity=0.137 Sum_probs=286.4
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.|..++|-|||..|+.+..+. +.+||++.|..+. ++++|.+.|.|++|+.||+ .+++|+.|+.|.+|+..-..
T Consensus 14 ci~d~afkPDGsqL~lAAg~r-lliyD~ndG~llq---tLKgHKDtVycVAys~dGk--rFASG~aDK~VI~W~~klEG- 86 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAGSR-LLVYDTSDGTLLQ---PLKGHKDTVYCVAYAKDGK--RFASGSADKSVIIWTSKLEG- 86 (1081)
T ss_pred chheeEECCCCceEEEecCCE-EEEEeCCCccccc---ccccccceEEEEEEccCCc--eeccCCCceeEEEecccccc-
Confidence 899999999999999887665 9999999998776 7899999999999999999 89999999999999854322
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
+..+ .|.+.|.|+.|+|-. +.|++++.. ..-+|..+.... .-......+.+.+|..||++++.|-. +|+|
T Consensus 87 ~LkY-SH~D~IQCMsFNP~~--h~LasCsLs-dFglWS~~qK~V--~K~kss~R~~~CsWtnDGqylalG~~----nGTI 156 (1081)
T KOG1538|consen 87 ILKY-SHNDAIQCMSFNPIT--HQLASCSLS-DFGLWSPEQKSV--SKHKSSSRIICCSWTNDGQYLALGMF----NGTI 156 (1081)
T ss_pred eeee-ccCCeeeEeecCchH--HHhhhcchh-hccccChhhhhH--HhhhhheeEEEeeecCCCcEEEEecc----CceE
Confidence 2223 499999999997643 678887754 355675443221 11122347889999999999999975 6778
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC-----CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
.+-+ .+|+....+.-....+.+|.+++|+|.. ..+++.....++.++.+. |+.+..-..-+. ...|+.+.+
T Consensus 157 siRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~F--dP~CisYf~ 232 (1081)
T KOG1538|consen 157 SIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNF--DPCCISYFT 232 (1081)
T ss_pred Eeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCC--Cchhheecc
Confidence 8876 3455544444433335899999999973 466777777788777774 444432211111 246889999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 625 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+|.++..|+.|+.+.+|.-+ |-.+.++......|+.++.. |++++++.|..||++--
T Consensus 233 NGEy~LiGGsdk~L~~fTR~-GvrLGTvg~~D~WIWtV~~~----------------------PNsQ~v~~GCqDGTiAC 289 (1081)
T KOG1538|consen 233 NGEYILLGGSDKQLSLFTRD-GVRLGTVGEQDSWIWTVQAK----------------------PNSQYVVVGCQDGTIAC 289 (1081)
T ss_pred CCcEEEEccCCCceEEEeec-CeEEeeccccceeEEEEEEc----------------------cCCceEEEEEccCeeeh
Confidence 99999999999999998644 33444444455555555554 34444555555555555
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEe--cCCCeEEEeecC--CceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYN--NGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s--~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
|++..... ..+....-........+.+- -.++.+-....| ..+.+|+-.. .......+.+|...++
T Consensus 290 yNl~fSTV---H~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrL-------AVQLpeki~iYel~se 359 (1081)
T KOG1538|consen 290 YNLIFSTV---HGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRL-------AVQLPEKILIYELYSE 359 (1081)
T ss_pred hhhHHhHh---hhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhh-------eecccceEEEEecccc
Confidence 55431100 00000000000000000000 000000000000 0111111000 0001112334443333
Q ss_pred CccccccCcCCCCCCCccEEEec---CCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEE--EcCCCCcEEEEEe
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALS---KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA--FNPHDNNVIAIGM 855 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s---~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~--~s~~d~~~la~g~ 855 (1084)
.. .....+- ...-...+.+| -.+..++.+.+..+..+|...-+. +... -.+-|.-+. =.|.+..-|+.|.
T Consensus 360 ~~-~~mhY~v--~ekI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGl 434 (1081)
T KOG1538|consen 360 DL-SDMHYRV--KEKIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGL 434 (1081)
T ss_pred cc-ccchhHH--HHHHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEe
Confidence 21 0000000 00001111111 134566666677777777753211 1000 000111111 1122556788899
Q ss_pred CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
.||.|.-.=+++.-++-... ....|.|+..+...+.||+....++..++|+.+++. .++.+ .+.+++
T Consensus 435 knGqV~kiF~dN~~PiLl~~-~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~el----L~QEp--------g~nSV~ 501 (1081)
T KOG1538|consen 435 KNGQVLKIFVDNLFPILLLK-QATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKEL----LFQEP--------GANSVA 501 (1081)
T ss_pred cCCcEEEEEecCCchhheec-ccceeEEeeccCCcceEEEEccCCeEEEEEccCCce----EeecC--------CCceEE
Confidence 99877654455443333222 456799999999999999999999999999999662 22222 477899
Q ss_pred EccCCCEEEE-EeCCeEEE
Q 001403 936 FHKDQTRFLL-VHETHLAI 953 (1084)
Q Consensus 936 ~s~dg~~la~-~~d~~i~v 953 (1084)
|.....-+.+ +..|.+.|
T Consensus 502 wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 502 WNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred eeccccceEEEecCCceEE
Confidence 9876554444 54455443
No 127
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.91 E-value=3.1e-23 Score=193.95 Aligned_cols=256 Identities=16% Similarity=0.193 Sum_probs=209.4
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.+-.+|.+-|-.+...--|++||+++.| ++|+|+.+...........|.||.++|+.++|.. -|.+||+
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD---------~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAS 75 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSD---------GTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILAS 75 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCC---------ccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeE
Confidence 3456899999999999999999999998 9999999988776555556999999999999976 8999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-c--eeeEeccCCCcEEE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-S--RTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~--~~~~~~~h~~~v~~ 482 (1084)
++.||.|.||.-++|+ ..+..+...|...|++++|.|.+-.+.|++++.||.|.|.+.++. . .......|.-.|++
T Consensus 76 csYDgkVIiWke~~g~-w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~Gvns 154 (299)
T KOG1332|consen 76 CSYDGKVIIWKEENGR-WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNS 154 (299)
T ss_pred eecCceEEEEecCCCc-hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccce
Confidence 9999999999999884 445557789999999999999988889999999999999987754 2 22345779999999
Q ss_pred EeecccCC-C-----------cEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCC----CEEEEEeeCCC
Q 001403 483 LCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLFSCGTSKE 544 (1084)
Q Consensus 483 ~~~~~~~~-~-----------~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~l~~~~~~~~ 544 (1084)
++|.|..- | ..|++|+.|..|++|+.++..- ...+..|...++.++|.|.- ..|++|+.
T Consensus 155 Vswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~Sq--- 231 (299)
T KOG1332|consen 155 VSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQ--- 231 (299)
T ss_pred eeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecC---
Confidence 99987521 1 5799999999999999987632 33478899999999999965 46888875
Q ss_pred CCeeEEEecCCCc--eEe-eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 545 GESFLVEWNESEG--AIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 545 ~~~~i~~wd~~~~--~~~-~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++.+.||-.... ... ..+.... ..+..+.|++.|+.|++++.|+.+.+|.-.
T Consensus 232 -Dg~viIwt~~~e~e~wk~tll~~f~---~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 232 -DGTVIIWTKDEEYEPWKKTLLEEFP---DVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred -CCcEEEEEecCccCcccccccccCC---cceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 667999976521 111 1122223 679999999999999999999999999754
No 128
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.91 E-value=4e-22 Score=191.22 Aligned_cols=308 Identities=13% Similarity=0.181 Sum_probs=231.9
Q ss_pred cccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCcccc------------ceeeeecCCCCCeEEEEE
Q 001403 330 LIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML------------FKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 330 l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~------------~~~~~~~~h~~~V~~v~f 396 (1084)
..-|.+.|.++.+-| .|+|+++|..| |.+.|||++..... ..+....+|+-.|..+.|
T Consensus 39 ~r~HgGsvNsL~id~tegrymlSGgad---------gsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~W 109 (397)
T KOG4283|consen 39 VRPHGGSVNSLQIDLTEGRYMLSGGAD---------GSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIW 109 (397)
T ss_pred eccCCCccceeeeccccceEEeecCCC---------ccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEE
Confidence 356778999999988 68999999888 99999999754311 111234678899999999
Q ss_pred cC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCC-cEEEEEEeCCCcEEEEECCCCceeeEec
Q 001403 397 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 397 sp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~l~l~s~~~d~~i~vwd~~~g~~~~~~~ 474 (1084)
-| |...+.+++.|.+++|||.++-+... .+ .-.+.|.+-++||-.. .-++++|..|-.|++.|+.+|...+++.
T Consensus 110 yP~DtGmFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~Ls 185 (397)
T KOG4283|consen 110 YPIDTGMFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLS 185 (397)
T ss_pred eeecCceeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeec
Confidence 99 77789999999999999999975443 33 3456788888888643 3367888889999999999999999999
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
||.+.|.++.|+|..+ -.|++|+.||.|++||++.. .+..++.|.
T Consensus 186 GHr~~vlaV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~ 230 (397)
T KOG4283|consen 186 GHRDGVLAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQ 230 (397)
T ss_pred cccCceEEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeec
Confidence 9999999999998754 68899999999999998742 111344444
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC---CC-CCCcceEEEecCCCEEE
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG---GG-LPENPRICFNKNGTLLA 630 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~~-~~~v~~v~~s~~~~~l~ 630 (1084)
.+++....++....|.+.+..++|+.++.++++.+.|..+++|+..+|+....-.+. .. ...-..+. +.+...++
T Consensus 231 hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv 309 (397)
T KOG4283|consen 231 HNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFV 309 (397)
T ss_pred ccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEE
Confidence 443333333322334489999999999999999999999999999987643222111 00 00001122 33455566
Q ss_pred EEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 631 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
..-.++.+.++++-++..++.+..|...+.|.++. ++-+...+++.|+.+..|-..
T Consensus 310 ~~p~~~~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~ 365 (397)
T KOG4283|consen 310 LFPNDGSLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA 365 (397)
T ss_pred EEecCCeEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence 66677999999999999999999998889888887 445566778888888888754
No 129
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.91 E-value=8.7e-21 Score=208.20 Aligned_cols=279 Identities=18% Similarity=0.235 Sum_probs=202.5
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeeccccccceeE
Q 001403 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK 661 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 661 (1084)
..+++++.|+.|++||..+++.+..+..+.. +..++|+|+++.+ ++++.++.|++||..+++....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~---~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQR---PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLP-------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCCC---CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEecc--------
Confidence 5678899999999999999998888875433 5679999999876 556678899999977553221110
Q ss_pred EEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeE
Q 001403 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 662 ~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 741 (1084)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEE
Q 001403 742 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL 819 (1084)
Q Consensus 742 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~v 819 (1084)
....+..++++|+++.+++++ ++.+++
T Consensus 71 ---------------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~ 99 (300)
T TIGR03866 71 ---------------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTV 99 (300)
T ss_pred ---------------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEE
Confidence 000123456777777665543 578999
Q ss_pred EEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEE-e
Q 001403 820 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G 897 (1084)
Q Consensus 820 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~-s 897 (1084)
||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++.+..+.. ...+.+++|+||+++|+.+ .
T Consensus 100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~ 176 (300)
T TIGR03866 100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE 176 (300)
T ss_pred EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence 99988777776653 23467899999 889999888775 577889988877655432 3346789999999988654 4
Q ss_pred CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeEeecCCCCCEEE
Q 001403 898 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ 975 (1084)
Q Consensus 898 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 975 (1084)
.++.|++||+.+++............+.. ......++|+||++++++ +.++.+.+||..+++...... +...+.+
T Consensus 177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~ 253 (300)
T TIGR03866 177 IGGTVSVIDVATRKVIKKITFEIPGVHPE-AVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ 253 (300)
T ss_pred CCCEEEEEEcCcceeeeeeeecccccccc-cCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence 69999999999876433211111110100 112457899999998655 356789999999888776543 3457899
Q ss_pred EEEccCCCEEEEE-eCCCcEEEEEcCCCceeEEec
Q 001403 976 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 976 l~fs~dg~~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++|+|+|++|+++ +.+|.|++||+.+++.+.++.
T Consensus 254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 9999999999886 468999999999999988876
No 130
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.91 E-value=6.9e-23 Score=209.99 Aligned_cols=282 Identities=13% Similarity=0.174 Sum_probs=224.5
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
|..-|.++++|...+++++++. |.|+|||+..... ...+.. +........++++.+.|
T Consensus 418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-------------------k~Pvsq--Ldcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-------------------KSPVSQ--LDCLNRDNYIRSCKLLP 475 (705)
T ss_pred cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-------------------CCcccc--ccccCcccceeeeEecC
Confidence 7788899999999998888875 5899999864311 000111 11112567889999999
Q ss_pred CCCEEEEEeC-CeEEEEEcCCceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 805 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
||+.|++|+. .++.|||+...... ..+........+++.+| |.++.+++..||.|.|||+.+..++..|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 9999999985 78999999865443 33444445678899999 89999999999999999999999999999999999
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~ 960 (1084)
.|+.+++||..|-||+-|.+|+-||+..+.. ++..+ +...|.++..+|.+.+||+| .++.+.|......+
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~ 625 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE 625 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence 9999999999999999999999999998542 22211 12368999999999999998 56778888876444
Q ss_pred eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEE
Q 001403 961 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 961 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
. .+ +..|.+.|.++.|++.|+++++.+.|..+-.|...-|.-+.... -.+.|.++.|+++ +.++|+
T Consensus 626 k-yq-lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk---------E~SsVlsCDIS~d---dkyIVT 691 (705)
T KOG0639|consen 626 K-YQ-LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK---------ESSSVLSCDISFD---DKYIVT 691 (705)
T ss_pred c-ee-ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc---------ccCcceeeeeccC---ceEEEe
Confidence 3 22 34589999999999999999999999999999999997664433 1445777777765 689999
Q ss_pred EeCCCcEEEEcC
Q 001403 1041 GLTNGEVYVIEP 1052 (1084)
Q Consensus 1041 ~~~dg~v~vw~~ 1052 (1084)
|+.|..-.||++
T Consensus 692 GSGdkkATVYeV 703 (705)
T KOG0639|consen 692 GSGDKKATVYEV 703 (705)
T ss_pred cCCCcceEEEEE
Confidence 999998888875
No 131
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.6e-22 Score=204.63 Aligned_cols=292 Identities=13% Similarity=0.177 Sum_probs=227.8
Q ss_pred cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEE
Q 001403 655 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 734 (1084)
Q Consensus 655 ~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 734 (1084)
..+.|+++.|+| ....+++++.|+++++|.++.........+.+. ..+|.+..|
T Consensus 212 s~~~I~sv~FHp----------------------~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~----~fPi~~a~f 265 (514)
T KOG2055|consen 212 SHGGITSVQFHP----------------------TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE----KFPIQKAEF 265 (514)
T ss_pred CcCCceEEEecC----------------------CCceEEEecCCCcEEEEEecCccChhheeeeec----cCccceeee
Confidence 345688888874 456688999999999999886666555555443 378999999
Q ss_pred ecCCC-eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 735 NNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 735 s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
.|+|. .+++++....++.||+...+.... ..+.+ -....+..+.+||++.+|+..+
T Consensus 266 ~p~G~~~i~~s~rrky~ysyDle~ak~~k~----------------------~~~~g-~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 266 APNGHSVIFTSGRRKYLYSYDLETAKVTKL----------------------KPPYG-VEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred cCCCceEEEecccceEEEEeeccccccccc----------------------cCCCC-cccchhheeEecCCCCeEEEcc
Confidence 99999 888888888889888865443111 11111 1245678899999999999988
Q ss_pred -CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc-CEEEEEEcCCCC
Q 001403 814 -GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALN 891 (1084)
Q Consensus 814 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~-~V~~l~~spd~~ 891 (1084)
.|.|.+....|++.+.+++ -.+.|..++|+. +++.|.+.+.+|.|.+||+....++.++....+ .-++++.|+++.
T Consensus 323 ~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS 400 (514)
T ss_pred cCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc
Confidence 6999999999999998887 567899999998 888888888999999999999999888874322 335688889999
Q ss_pred EEEEEeCCCcEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeEeec
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFP 967 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~i~vwd~~~~~~~~~~~~ 967 (1084)
+||+|+..|.|.|||..+.... ..+.+.....-. ..|++++|++|+++||.+ ..+.+++-.+.+......|..
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~ 477 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPT 477 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCC
Confidence 9999999999999997763211 112333333333 379999999999999984 567899999988777766554
Q ss_pred CC--CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 968 IS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 968 ~h--~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.. -+.|+|++|||.|.+|+.|..+|.|.+|.+.
T Consensus 478 ~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 478 SNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 32 5689999999999999999999999999874
No 132
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.90 E-value=2e-22 Score=206.34 Aligned_cols=254 Identities=16% Similarity=0.243 Sum_probs=204.6
Q ss_pred ccCCCCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCcccccee-------eeecCCCCCeEEEEEcC-CCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------ALVRDPGVSVNRVVWSP-DGS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-------~~~~~h~~~V~~v~fsp-dg~ 401 (1084)
-.|.++|..+..-|....+++ +... +.|.|||..+....... ..+.||...=..++|++ ..-
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~---------~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g 191 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSS---------GDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG 191 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCC---------CCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce
Confidence 468889999999997766655 3333 89999999764333322 15889998888899999 455
Q ss_pred EEEEEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC--CCceeeEecc
Q 001403 402 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG 475 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~--~g~~~~~~~~ 475 (1084)
+|++++.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.|||++ +.++.....+
T Consensus 192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a 270 (422)
T KOG0264|consen 192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA 270 (422)
T ss_pred eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence 889999999999999985443 5566678899999999999998877 78999999999999999 5566678899
Q ss_pred CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
|.++|.+++|+|.. +..||+||.|++|++||+++... ...+..|...|..+.|||....+++.+. .++.+.+||+
T Consensus 271 h~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl 346 (422)
T KOG0264|consen 271 HSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL 346 (422)
T ss_pred cCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence 99999999999874 58999999999999999998654 6688999999999999997765544432 2778999998
Q ss_pred CCce--------------EeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 001403 555 SEGA--------------IKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 555 ~~~~--------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
..-. ++..-.||. ..|..+.|+|+..++++ .++|+.+.||.+..
T Consensus 347 s~ig~eq~~eda~dgppEllF~HgGH~---~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 347 SRIGEEQSPEDAEDGPPELLFIHGGHT---AKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cccccccChhhhccCCcceeEEecCcc---cccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 7422 223344555 89999999999887655 78999999999863
No 133
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=3.8e-22 Score=193.34 Aligned_cols=282 Identities=15% Similarity=0.223 Sum_probs=214.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
..|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|++.|..|.+||+..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 8999999999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC----eEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+.++ ...+|..+.|+|......+++--... -.+-++.............+ ...+..|.+.|+++++|.. .
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K 174 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K 174 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence 9987 78899999999987765655544333 34444444222221111111 1223468899999999975 7
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-------eEE--EEEcCCCCCCCc
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN 617 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v 617 (1084)
|.+.++|..+-+++..++-.. ...|..+.++..|+.++.-+.|+.||.|+...- +.. +.++.--....-
T Consensus 175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W 252 (405)
T KOG1273|consen 175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW 252 (405)
T ss_pred ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence 789999999999988876544 357899999999999999999999999997631 111 111100011124
Q ss_pred ceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccc-cceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 618 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+++|+.+|.+++.++. ...++||....|..+..+.|.. .....+.+.|.... +++
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~----------------------i~s 310 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPI----------------------IAS 310 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeecccccceee----------------------eee
Confidence 67999999999988875 4689999999999999998877 45666667654433 233
Q ss_pred ecccCccccccce
Q 001403 696 VEAENKSEVEKPL 708 (1084)
Q Consensus 696 ~~~d~~i~~w~~~ 708 (1084)
. ..|.+++|...
T Consensus 311 i-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 311 I-ASGVVYIWAVV 322 (405)
T ss_pred c-cCCceEEEEee
Confidence 3 55788888854
No 134
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=2.8e-22 Score=205.26 Aligned_cols=245 Identities=16% Similarity=0.184 Sum_probs=204.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
..+.+|.+..+....+..++ .++|.|++-+|+|.+|+.|+..|.+++|.+.+|..+. .+.+|-..|+|+.|+.|
T Consensus 61 p~l~vw~i~k~~~~~q~~v~---Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~d 134 (476)
T KOG0646|consen 61 PLLHVWEILKKDQVVQYIVL---PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDD 134 (476)
T ss_pred ccccccccCchhhhhhhccc---ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCC
Confidence 68899999877666544433 3589999999999999999999999999999998777 67899999999999999
Q ss_pred CCcEEEEEEeCCCcEEEEECC---------CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE
Q 001403 445 CKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~---------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
|. +++|||.||.|.+|++. +-++++.|..|.-+|+++...+.+-..+++|+|.|.++++||+..+..+.
T Consensus 135 gs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLl 212 (476)
T KOG0646|consen 135 GS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLL 212 (476)
T ss_pred Cc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeE
Confidence 99 89999999999999763 34567899999999999988766566799999999999999999987777
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC----------------ceEeeeeeccccccCceEEEEEc
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE----------------GAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~----------------~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
.+..+ ..+.+++.+|-++.+++|+. +|.|.+.++.. +..+..+.||.. ...|+|++++
T Consensus 213 ti~fp-~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~-~~~ITcLais 286 (476)
T KOG0646|consen 213 TITFP-SSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN-ESAITCLAIS 286 (476)
T ss_pred EEecC-CcceeEEEcccccEEEecCC----cceEEeeehhcCCcccccccccccccccceeeeeccccC-CcceeEEEEe
Confidence 66544 47899999999999999986 55677665432 234556677771 1389999999
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
-||..|++|+.||.++|||+.+.++++++... ..+|+.+.+.|-
T Consensus 287 ~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 287 TDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred cCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence 99999999999999999999999999888732 235888888663
No 135
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=200.06 Aligned_cols=288 Identities=13% Similarity=0.201 Sum_probs=234.9
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEEeCCCEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIV 412 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~~dg~v 412 (1084)
.+.|++|.|+|..+.|.++..| ++++||.+.......... +.--..+|.+.+|.|+|. .+++++.....
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d---------~~lrifqvDGk~N~~lqS-~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ 282 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLD---------GTLRIFQVDGKVNPKLQS-IHLEKFPIQKAEFAPNGHSVIFTSGRRKYL 282 (514)
T ss_pred cCCceEEEecCCCceEEEecCC---------CcEEEEEecCccChhhee-eeeccCccceeeecCCCceEEEecccceEE
Confidence 3589999999999999999888 999999997644433222 222357999999999999 89999999999
Q ss_pred EEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
+.||+.+++..+ +..+.++. ..+.....|++++ +|+..|..|.|.+-...+++.+.+++ -.+.|..++|+ .++
T Consensus 283 ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fs--Sds 356 (514)
T KOG2055|consen 283 YSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFS--SDS 356 (514)
T ss_pred EEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEe--cCC
Confidence 999999987543 33444554 3577888999999 89999999999999999999998887 56789999995 577
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC------ceEeeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------GAIKRTYQ 564 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~------~~~~~~~~ 564 (1084)
..|++.+.+|.|.+||++.......+...+. .-++++.+++|.++|+|+. .|.|.|||.++ .+++..+.
T Consensus 357 k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~PkPik~~d 432 (514)
T KOG2055|consen 357 KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTNPKPIKTVD 432 (514)
T ss_pred cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCCCCchhhhh
Confidence 9999999999999999999988887776654 4578899999999999985 77899999654 34455555
Q ss_pred ccccccCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
... ..|+++.|++|...|+.+| .+..+++-.+.+.....-++.. .....|.|++|+|.+.++|+|..+|.+.+|
T Consensus 433 NLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~ 509 (514)
T KOG2055|consen 433 NLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLF 509 (514)
T ss_pred hhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeE
Confidence 444 6899999999999998877 5678999988876666555432 334568999999999999999999999999
Q ss_pred EcC
Q 001403 642 ETP 644 (1084)
Q Consensus 642 d~~ 644 (1084)
.+.
T Consensus 510 kL~ 512 (514)
T KOG2055|consen 510 KLH 512 (514)
T ss_pred eec
Confidence 864
No 136
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=1.9e-20 Score=205.55 Aligned_cols=290 Identities=11% Similarity=0.064 Sum_probs=209.2
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEccCCccccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQ 425 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~~~~~~~~ 425 (1084)
..++++..| +.+++||+.++..... +.++ ..+.+++|+|||+.+ ++++.++.|++||..+++...
T Consensus 2 ~~~~s~~~d---------~~v~~~d~~t~~~~~~---~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~- 67 (300)
T TIGR03866 2 KAYVSNEKD---------NTISVIDTATLEVTRT---FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIG- 67 (300)
T ss_pred cEEEEecCC---------CEEEEEECCCCceEEE---EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEE-
Confidence 456676666 9999999987654332 3334 346789999999987 566788999999999886544
Q ss_pred eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC-eEE
Q 001403 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-KIK 504 (1084)
Q Consensus 426 ~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-~i~ 504 (1084)
.+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++|+ +++.++++++.++ .+.
T Consensus 68 --~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~~~~~~~ 140 (300)
T TIGR03866 68 --TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSETTNMAH 140 (300)
T ss_pred --eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEecCCCeEE
Confidence 3333433 567899999984 344556789999999999888877763 3346778884 4778888888765 567
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcC
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDT 580 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~ 580 (1084)
+||..+......... ......++|+|+|+++++++. .++.|.+||+.+++.+..+..+.. .......++|+|
T Consensus 141 ~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~ 216 (300)
T TIGR03866 141 FIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK 216 (300)
T ss_pred EEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC
Confidence 789877655443322 234567899999998876542 256799999999988776653210 011235688999
Q ss_pred CCCEEEE-EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccc
Q 001403 581 AKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDN 658 (1084)
Q Consensus 581 ~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~ 658 (1084)
+++++++ .+.++.+.+||..+++....+.... .+.+++|+|+|++|+++ ..++.|.+||+.+++.+..+... ..
T Consensus 217 dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~ 292 (300)
T TIGR03866 217 DGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQ---RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-RL 292 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCC---CcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-cc
Confidence 9998655 4556789999999988876654322 47899999999999886 45899999999999888877653 33
Q ss_pred eeEEEEc
Q 001403 659 LRKLSVN 665 (1084)
Q Consensus 659 i~~~~~~ 665 (1084)
.+.++++
T Consensus 293 ~~~~~~~ 299 (300)
T TIGR03866 293 PWGVVVR 299 (300)
T ss_pred cceeEeC
Confidence 3555554
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.1e-21 Score=200.85 Aligned_cols=285 Identities=16% Similarity=0.208 Sum_probs=228.0
Q ss_pred ceEEEEEcCCccccceeeeecCC-CCC-eEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDP-GVS-VNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h-~~~-V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
.++.+||+.++....+. ++. ... -.+-+. .+.|++++. ....+.+|.+.......+. .--.++|.+++-
T Consensus 18 ~~~~~~dl~TGt~~~~y---kg~~~a~~~sl~~l--~~~yllsaq~~rp~l~vw~i~k~~~~~q~---~v~Pg~v~al~s 89 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQY---KGSYLAQAASLTAL--NNEYLLSAQLKRPLLHVWEILKKDQVVQY---IVLPGPVHALAS 89 (476)
T ss_pred cceeEEecCCCceeEEe---cCcccccchhhhhh--chhheeeecccCccccccccCchhhhhhh---cccccceeeeec
Confidence 56899999887766553 221 111 111112 236777774 3457999999876544422 234578999999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC---------CCC
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---------SLG 512 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---------~~~ 512 (1084)
+|+|. +++.|+..+.|++|.+.+|..+..+.+|-..|+++.| +.||.+++||+.||.|.+|++. +..
T Consensus 90 ~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~ 165 (476)
T KOG0646|consen 90 SNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVK 165 (476)
T ss_pred CCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEecCCCccEEEEEEEeecccccCCCcc
Confidence 99998 7888879999999999999999999999999999999 6688999999999999999763 234
Q ss_pred ceEeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC
Q 001403 513 ARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 513 ~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
+...+..|.-+|+.+...+- ..++++++. |.++++||+..|..+.++.... .+.+++.+|.+..+++|++
T Consensus 166 p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp~----si~av~lDpae~~~yiGt~ 237 (476)
T KOG0646|consen 166 PLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFPS----SIKAVALDPAERVVYIGTE 237 (476)
T ss_pred ceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecCC----cceeEEEcccccEEEecCC
Confidence 56778889999999887765 457888876 7789999999999998887655 8999999999999999999
Q ss_pred CCcEEEEECCC----------------CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 591 DHVIKIWDMNK----------------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 591 dg~i~iwd~~~----------------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+|.|.+.++.. +..+..+.+|.....|+|++++-||..|++|+.||.+.|||+.+.++++++..
T Consensus 238 ~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~ 317 (476)
T KOG0646|consen 238 EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQT 317 (476)
T ss_pred cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhh
Confidence 99999987653 22344555665556899999999999999999999999999999999999888
Q ss_pred cccceeEEEEcCCCc
Q 001403 655 LSDNLRKLSVNPIST 669 (1084)
Q Consensus 655 ~~~~i~~~~~~p~~~ 669 (1084)
..++|+.+.+.|...
T Consensus 318 ~kgpVtnL~i~~~~~ 332 (476)
T KOG0646|consen 318 SKGPVTNLQINPLER 332 (476)
T ss_pred hccccceeEeecccc
Confidence 888999999876533
No 138
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.89 E-value=8.6e-22 Score=201.66 Aligned_cols=251 Identities=20% Similarity=0.334 Sum_probs=201.6
Q ss_pred CCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccc-------cceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 386 DPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA-------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 386 ~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~-------~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
.|.+.|..+.+-|. ...+|+.+..+.|.|||...-... ++...|.+|.+.=+.++|++.... .+++++.|+
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~d~ 200 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSDDH 200 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccCCC
Confidence 48999999999995 556677788899999998753322 233378899998888999998776 799999999
Q ss_pred cEEEEECCCCc-------eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC--CCCceEeecCCCCeEEEEE
Q 001403 458 TIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD--SLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 458 ~i~vwd~~~g~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~ 528 (1084)
+|++||+.... ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|...+.|++
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~ 279 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVA 279 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEE
Confidence 99999987433 2466789999999999998754 689999999999999999 4556667788899999999
Q ss_pred EcCCCC-EEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEE
Q 001403 529 YSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 529 ~s~d~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
|+|-+. .||+++. +++|.+||+++ .+.+..+.+|. ..|..+.|+|.. ..|++++.|+.+.|||+..-...
T Consensus 280 fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~---dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 280 FNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHE---DEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred eCCCCCceEEeccC----CCcEEEeechhcccCceeccCCC---cceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 999555 5566654 77799999987 45677888888 999999999985 56677889999999998752222
Q ss_pred ------------EEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCC
Q 001403 606 ------------TTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPE 645 (1084)
Q Consensus 606 ------------~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~ 645 (1084)
-.+...++...|..+.|+|+.. .+++++.|+.+.||.+..
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 1244446666799999999765 577788899999999874
No 139
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.89 E-value=8.6e-21 Score=184.51 Aligned_cols=271 Identities=14% Similarity=0.105 Sum_probs=212.5
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
....|+.+.|+|.+..|++++-||++++||+...+... .-.|..++.+++|.++.. +++|+.||.|+.+|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 57899999999999999999999999999999874332 236899999999998765 89999999999999998
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+... .+..|..+|.++...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|+.|++++. +
T Consensus 85 ~~~~-~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~ 154 (323)
T KOG1036|consen 85 GNED-QIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----D 154 (323)
T ss_pred Ccce-eeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----C
Confidence 8764 456699999999986533 589999999999999998744444443333 6766664 4667777665 5
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC----eEEEEEcCCCC-------CC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------LP 615 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~ 615 (1084)
..+.+||+++........... -...++++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-
T Consensus 155 r~v~iyDLRn~~~~~q~reS~-lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~y 233 (323)
T KOG1036|consen 155 RKVLIYDLRNLDEPFQRRESS-LKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIY 233 (323)
T ss_pred ceEEEEEcccccchhhhcccc-ceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEE
Confidence 669999998765433211111 1257899999999999999999999988666554 33334444321 12
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeec
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~ 675 (1084)
+|++++|+|-...||+|+.||.|.+||..+.+.+..+......|..++|+.++..+++++
T Consensus 234 PVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~ 293 (323)
T KOG1036|consen 234 PVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIAS 293 (323)
T ss_pred EeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEe
Confidence 588999999999999999999999999999999988888888899999997777666554
No 140
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=4.4e-21 Score=186.04 Aligned_cols=298 Identities=14% Similarity=0.210 Sum_probs=222.7
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
++|..+..+|.... ..|+.||+.|.+||+|..| |.|.|||+.|.... .++.+|..+|++++||+||
T Consensus 12 ~~PEel~~tld~~~--a~~~~Fs~~G~~lAvGc~n---------G~vvI~D~~T~~ia---r~lsaH~~pi~sl~WS~dg 77 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL--AECCQFSRWGDYLAVGCAN---------GRVVIYDFDTFRIA---RMLSAHVRPITSLCWSRDG 77 (405)
T ss_pred cChHhhceeccCCc--cceEEeccCcceeeeeccC---------CcEEEEEccccchh---hhhhccccceeEEEecCCC
Confidence 55666667776442 7899999999999999988 99999999886532 3478899999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-.++..+++-- +..-.+-++..+....--....+..
T Consensus 78 r~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~Lp~d~d~dl 152 (405)
T KOG1273|consen 78 RKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVLPKDDDGDL 152 (405)
T ss_pred CEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeeccCCCcccc
Confidence 99999999999999999999877643 256789999999987764444433 4444555554432111001111111
Q ss_pred E----EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC
Q 001403 481 Y----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 481 ~----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
. +..| +..|+++++|...|.+.+++..+.+....+.... ..|..+.++..|++++..+. +..|+.|+++
T Consensus 153 n~sas~~~f--dr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR~ye~~ 226 (405)
T KOG1273|consen 153 NSSASHGVF--DRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIRTYEIS 226 (405)
T ss_pred ccccccccc--cCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEEEEehh
Confidence 1 1123 5577899999999999999999998887776665 68999999999999999876 7779999876
Q ss_pred C-------ceE--eeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 556 E-------GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 556 ~-------~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
. ++. .+.++.. .....-.+++|+.+|.++++++ ....++||....|.+++.+.+..+ .....+.|+|-
T Consensus 227 di~~~~r~~e~e~~~K~qDv-VNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~DV~whp~ 304 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDV-VNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLDVNWHPV 304 (405)
T ss_pred hhcccCccCCcChhHHHHHH-HhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheeecccccc
Confidence 2 111 1222111 1123457889999999998876 456799999999999999987654 24678889998
Q ss_pred CCEEEEEECCCeEEEEEcCCC
Q 001403 626 GTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
...+++. ..|.+++|.....
T Consensus 305 rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 305 RPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred eeeeeec-cCCceEEEEeecc
Confidence 8888877 6799999987643
No 141
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.8e-23 Score=218.65 Aligned_cols=246 Identities=18% Similarity=0.311 Sum_probs=218.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
-.++|||... +..|...|.|+..-..++.+++|+.|..+-+|.+.....+- .+.+|..+|.++.|+++
T Consensus 14 t~Lr~~~~~~---------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~ 81 (825)
T KOG0267|consen 14 TKLRVWDTRE---------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTS 81 (825)
T ss_pred eccccccchh---------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcc
Confidence 4456777643 33488899999987788999999999999999987654443 68899999999999999
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
.. +|++|+.+|+|++||++.++.++++.+|...+.++.|+| -+.+.++|+.|+.+++||.+..++...+..|...+
T Consensus 82 E~--LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv 157 (825)
T KOG0267|consen 82 ER--LLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVV 157 (825)
T ss_pred hh--hhcccccCCceeeeehhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCccee
Confidence 88 899999999999999999999999999999999999966 55789999999999999999999999999999899
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
..+.|+|+|++++.++. +..+.+||...|+....|.+|. +.+.++.|+|..-.++.|+.|+++++||+++.+.
T Consensus 158 ~~l~lsP~Gr~v~~g~e----d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~ 230 (825)
T KOG0267|consen 158 DVLRLSPDGRWVASGGE----DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV 230 (825)
T ss_pred EEEeecCCCceeeccCC----cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEE
Confidence 99999999999999875 6789999999999999999998 8999999999988889999999999999999888
Q ss_pred EEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 605 LTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 605 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+...... ...|.+.+|+|+++.+++|...
T Consensus 231 I~s~~~~--~~~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 231 ISSGKPE--TDGVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred eeccCCc--cCCceeeeecCCceeeecCchh
Confidence 8776654 4468999999999999888654
No 142
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.88 E-value=2.9e-21 Score=202.88 Aligned_cols=322 Identities=13% Similarity=0.168 Sum_probs=236.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
++.||++.|.++...|.|.+||+|+.||+|+||.+.||.+++.. ...+.|.|++|+|.+..-+|+.+- ...+.|-
T Consensus 395 vyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~iv 469 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVLIV 469 (733)
T ss_pred eEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceEEe
Confidence 47899999999999999999999999999999999999988744 234479999999998864455444 4447777
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE----ecCCeEEEEECCCCC----ceEeecCCCCeEEEEEEcCCCC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~----s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
+..=|..+..-. . ...|+++ ..++.+..|.-.... .......+...|..+.|+.+|.
T Consensus 470 np~~G~~~e~~~--t-------------~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGD 534 (733)
T KOG0650|consen 470 NPIFGDRLEVGP--T-------------KELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGD 534 (733)
T ss_pred Cccccchhhhcc--h-------------hhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCc
Confidence 765553221110 0 0111111 234566678654222 2334456777999999999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++...++ +...|.|.++........|.... +.+.++.|+|...++++++. ..|+|||+..+++++.+... .
T Consensus 535 YlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 535 YLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred eEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 999987644 36679999988776665555444 78999999999999998875 68999999988877776533 3
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
..|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++.|...++++++++. -.++
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~r----------------------yPLf 665 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKR----------------------YPLF 665 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccc----------------------ccee
Confidence 35889999999999999999999999999855 788899999999999999854 3456
Q ss_pred ceecccCccccccceeecCccceeeccCC---ccccc----eEEEEEEecCCCeEEEeecCCceEEe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPS---KVKAN----KISRLTYNNGGQAIFALASNGVHLMW 753 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~----~i~~l~~s~~g~~l~~~~~dg~i~vw 753 (1084)
++++.||++.++.-..........+..|. .+|.. .|....|+|....|++++.||+|++|
T Consensus 666 as~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 666 ASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 66677777766653322221111111111 23443 38888999999999999999999987
No 143
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=8.4e-21 Score=199.40 Aligned_cols=322 Identities=15% Similarity=0.231 Sum_probs=238.6
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC--EEEEEECCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg 636 (1084)
+...+.+|. +.|.++...|.|.+|++|+.||+|+||.+.+|.++.++...+. |.+++|+|.+. .||++...
T Consensus 392 ~~lvyrGHt---g~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~---I~~vaw~P~~~~~vLAvA~~~- 464 (733)
T KOG0650|consen 392 CALVYRGHT---GLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSE---IRSVAWNPLSDLCVLAVAVGE- 464 (733)
T ss_pred eeeeEeccC---CeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecce---eEEEEecCCCCceeEEEEecC-
Confidence 345677888 9999999999999999999999999999999999999987664 89999999665 45555444
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee----cccCccccccceeec-
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV----EAENKSEVEKPLFAR- 711 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~----~~d~~i~~w~~~~~~- 711 (1084)
.+.|.+..-|..+..-. ....++++ ..++.+-.|.-....
T Consensus 465 ~~~ivnp~~G~~~e~~~-----------------------------------t~ell~~~~~~~~p~~~~~~W~~~~~~e 509 (733)
T KOG0650|consen 465 CVLIVNPIFGDRLEVGP-----------------------------------TKELLASAPNESEPDAAVVTWSRASLDE 509 (733)
T ss_pred ceEEeCccccchhhhcc-----------------------------------hhhhhhcCCCccCCcccceeechhhhhh
Confidence 36666554442111100 00011111 122345556543211
Q ss_pred --CccceeeccCCccccceEEEEEEecCCCeEEEeecC---CceEEeeccCCccCcCcccceecCCeeecCCCCCccccc
Q 001403 712 --PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 786 (1084)
Q Consensus 712 --~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1084)
...|..+. |...|..+.|+..|.+|++...+ ..|.|+++..... ..
T Consensus 510 ~~~~v~~~I~-----~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~s----------------------Q~-- 560 (733)
T KOG0650|consen 510 LEKGVCIVIK-----HPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKS----------------------QS-- 560 (733)
T ss_pred hccceEEEEe-----cCCccceeeeecCCceEEEeccCCCcceEEEEecccccc----------------------cC--
Confidence 11233333 67799999999999999988764 3455555543221 11
Q ss_pred cCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 787 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 787 ~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.+ ....+.+.++.|+|...++++++...|++||+..++.+..+......|..++++| .|.-|+.|+.|+.+..||+.
T Consensus 561 PF--~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp-~GDnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 561 PF--RKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHP-NGDNLILGSYDKKMCWFDLD 637 (733)
T ss_pred ch--hhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecC-CCCeEEEecCCCeeEEEEcc
Confidence 11 1256788999999999999999999999999999888888888888999999999 88888899999999999998
Q ss_pred Cc-eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----ceeeeeeeecCCCCccC-CCCceEEEEccCC
Q 001403 867 SS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW----GIQTCRSLQTPDGVMTL-APSETHIQFHKDQ 940 (1084)
Q Consensus 867 ~~-~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~----~~~~~~~~~~~~~~~~~-~~~v~~~~~s~dg 940 (1084)
-+ ++.+++.-|...+++++|++.-.++++|+.||++.|+--.-. +......++.+.+|... ...|..+.|+|..
T Consensus 638 lsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q 717 (733)
T KOG0650|consen 638 LSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ 717 (733)
T ss_pred cCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC
Confidence 54 677889999999999999999999999999999998853211 11123356666776542 2458889999999
Q ss_pred CEEEE-EeCCeEEEE
Q 001403 941 TRFLL-VHETHLAIY 954 (1084)
Q Consensus 941 ~~la~-~~d~~i~vw 954 (1084)
-+|.+ |.||+|++|
T Consensus 718 pWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 718 PWLFSAGADGTIRLF 732 (733)
T ss_pred ceEEecCCCceEEee
Confidence 99998 689999998
No 144
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.87 E-value=1.4e-20 Score=180.82 Aligned_cols=295 Identities=16% Similarity=0.161 Sum_probs=216.5
Q ss_pred cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcc---------ceeeccCCc
Q 001403 653 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSE---------CQSLLLPSK 723 (1084)
Q Consensus 653 ~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~---------~~~~~~~~~ 723 (1084)
+.|.+.|+++.+.+ ..|+++++|+.||.+.+||++.....+ |........
T Consensus 40 r~HgGsvNsL~id~---------------------tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~ 98 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDL---------------------TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHEN 98 (397)
T ss_pred ccCCCccceeeecc---------------------ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCc
Confidence 45667777777763 468999999999999999987654221 222223345
Q ss_pred cccceEEEEEEec-CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
+|...|..+.|-| |...+.+++-|.+++|||.+. -+....+. -++.|.+-++
T Consensus 99 ~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT----------------------lQ~a~~F~-----me~~VYsham 151 (397)
T KOG4283|consen 99 GHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT----------------------LQEAVDFK-----MEGKVYSHAM 151 (397)
T ss_pred cceeeeeeeEEeeecCceeecccccceEEEeeccc----------------------ceeeEEee-----cCceeehhhc
Confidence 7888899998888 445566666798888887543 22222332 2445666666
Q ss_pred cCCC---CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eee------
Q 001403 803 SKND---AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI------ 871 (1084)
Q Consensus 803 s~dg---~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~------ 871 (1084)
||-. .++|+|. +-+|++-|+.+|....++.+|.+.|.++.|+|...-.||+|+.||.|++||+... .+.
T Consensus 152 Sp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 152 SPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 6632 3566666 5779999999999999999999999999999976778999999999999999753 122
Q ss_pred --------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 872 --------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 872 --------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
+.-..|.+.|.+++|+.|+.++++++.|..+++|+..+|+.......+....... ...+. +. +.+...+
T Consensus 232 n~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~-~~~~~-~~-~~~s~vf 308 (397)
T KOG4283|consen 232 NTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTT-SFAVH-IQ-SMDSDVF 308 (397)
T ss_pred cCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccc-cceEE-Ee-ecccceE
Confidence 2233588999999999999999999999999999999987544332222221111 00122 33 3333333
Q ss_pred E-EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 944 L-LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 944 a-~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+ .-.++.+.++.+-.|..+..+ ..|-..|.+.+|-||=+.+.++..|+.|..|-.
T Consensus 309 v~~p~~~~lall~~~sgs~ir~l-~~h~k~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 309 VLFPNDGSLALLNLLEGSFVRRL-STHLKRINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEEecCCeEEEEEccCceEEEee-ecccceeeEEeecCchhhhhccccCCccccccc
Confidence 3 346799999999999998874 578899999999999999999999999999976
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.87 E-value=3e-19 Score=189.33 Aligned_cols=175 Identities=18% Similarity=0.277 Sum_probs=137.5
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR 514 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~ 514 (1084)
.|..++|-|||.+++++. +..+.+||...|..+.++++|.+.|++++| +.||+.+++|+.|+.|.+|+-.....
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGI- 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEecccccce-
Confidence 799999999999744443 456999999999999999999999999999 55889999999999999997543322
Q ss_pred EeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcE
Q 001403 515 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 594 (1084)
Q Consensus 515 ~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 594 (1084)
.. -.|+..|.||.|+|-...|++|+-+. .-+|......... .+. ...+.+++|..||.+++.|-.+|+|
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~K-~ks----s~R~~~CsWtnDGqylalG~~nGTI 156 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVSK-HKS----SSRIICCSWTNDGQYLALGMFNGTI 156 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHHh-hhh----heeEEEeeecCCCcEEEEeccCceE
Confidence 22 35777999999999999999998532 6788866543322 221 2468899999999999999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
.+-+....+.+..-...+...+|.+++|+|..
T Consensus 157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred EeecCCCCcceEEeCCCCCCCCceEEEecCCC
Confidence 99976544444444444556679999999964
No 146
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.86 E-value=8e-21 Score=205.89 Aligned_cols=237 Identities=17% Similarity=0.235 Sum_probs=196.1
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC-CEEEEEe-C
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AYLFSAS-G 814 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg-~~l~~~s-d 814 (1084)
+.++|++++.+|.|.+||+..... ...+.. +. .|...+.++.|++-. .+|++|+ |
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~iliSGSQD 155 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNILISGSQD 155 (839)
T ss_pred hhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccEEEecCCC
Confidence 456788999999999999875210 000111 11 399999999999865 5667777 8
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eeeeeecccccCEEEEEEcCCCCEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
|.|++||+...+...++.+....|..++|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|+|++.+|
T Consensus 156 g~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 156 GTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWL 235 (839)
T ss_pred ceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCcee
Confidence 999999999999999999988999999999988999999999999999999864 5677889999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE----EeCCeEEEEEcCCcceeeEeecCC
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL----VHETHLAIYEAEELTCLKQWFPIS 969 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~----~~d~~i~vwd~~~~~~~~~~~~~h 969 (1084)
||||.|++|+|||+.+.+.....++.+.. ++..+.|-|+..+.++ +.|..|+|||+...-.....+..|
T Consensus 236 ATGGRDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH 308 (839)
T KOG0269|consen 236 ATGGRDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH 308 (839)
T ss_pred eecCCCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc
Confidence 99999999999999987766655665543 5889999999876544 267889999999777777777889
Q ss_pred CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCc
Q 001403 970 SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 970 ~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
...++.++|-. |-..|.+++.||+|..-.++.+.
T Consensus 309 ~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 309 TDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred CccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99999999966 66789999999998877666553
No 147
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.4e-19 Score=175.41 Aligned_cols=255 Identities=12% Similarity=0.168 Sum_probs=191.3
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
-.+|.+-|+++.|.+-|+++|+|+.|++|+|||.+.. .........+.|.+.|..+.|.+. |+ .+++++.|+++.
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~ 86 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS 86 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence 4569999999999999999999999999999996533 234444578899999999999765 66 899999999999
Q ss_pred EEECC---------CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE------eec-------
Q 001403 461 VWDAV---------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DYD------- 518 (1084)
Q Consensus 461 vwd~~---------~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~~------- 518 (1084)
||.-. .-....++......|+.+.|.|..-|-.+++++.||++|||+........ ++.
T Consensus 87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~ 166 (361)
T KOG2445|consen 87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG 166 (361)
T ss_pred eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence 99741 11234567778889999999999999999999999999999865432211 111
Q ss_pred CCCCeEEEEEEcCC---CCEEEEEeeCC-CCCeeEEEecCCCc----eEeeeeeccccccCceEEEEEcCCC----CEEE
Q 001403 519 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTAK----DQIL 586 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d---~~~l~~~~~~~-~~~~~i~~wd~~~~----~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~ 586 (1084)
.+..+..|+.|+|. ..+|++++.+. ...+.+.||....+ ..+..+.+|. .+|+.++|.|+- ..|+
T Consensus 167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA 243 (361)
T KOG2445|consen 167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA 243 (361)
T ss_pred cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence 23447788999873 45677776431 12235777765433 2345566666 999999999973 4688
Q ss_pred EEECCCcEEEEECCCCe-----------------EEEEE-cCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 587 AAGDDHVIKIWDMNKVQ-----------------LLTTI-DAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++.|| |+||++.... .+..+ ...++...|..+.|+-.|..|++.++||.+|+|...
T Consensus 244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 899999 9999987311 11111 133445579999999999999999999999999865
No 148
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.85 E-value=9.5e-20 Score=183.46 Aligned_cols=301 Identities=15% Similarity=0.194 Sum_probs=218.7
Q ss_pred ecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCcc------ccceeeeecCCCCCeEEEEEcCCCC
Q 001403 329 TLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGACS------MLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~~------~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.++.|+ +|..+.|.+++. .||+|.-| ..|+||.+.... ...-...+..|...|++|.|+|+|.
T Consensus 9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D---------~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~ge 78 (434)
T KOG1009|consen 9 SWHDHE-PVYSVDFQKNSLNKLATAGGD---------KDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGE 78 (434)
T ss_pred EecCCC-ceEEEEeccCcccceecccCc---------cceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcC
Confidence 345555 999999999887 99998766 999999996432 2233456889999999999999999
Q ss_pred EEEEEeCCCEEEEEEcc--------C-----CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 402 LLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~--------~-----~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
.||+|+++|.|.+|... + .+.......+.+|...|..++|+||+. ++++++-|+++++||+..|.
T Consensus 79 lLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 79 LLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred eeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccce
Confidence 99999999999999876 3 222233446789999999999999999 89999999999999999999
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----------C--------CC----CeEE
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----------A--------PG----LGCT 525 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----------~--------~~----~~i~ 525 (1084)
.+..+.+|...|..++|.| -++++++-+.|...+.+.+...+...... . |. .-..
T Consensus 157 l~~~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 157 LLAILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred eEeeccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999965 45789988888866666554332211110 0 00 1245
Q ss_pred EEEEcCCCCEEEEEeeCCC--C---CeeEEEecCCC-ceEeeeeeccccccCceEEEEEcC------------------C
Q 001403 526 RMAYSANGRRLFSCGTSKE--G---ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDT------------------A 581 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~--~---~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~------------------~ 581 (1084)
.++|+|||.++++.+.--+ + .+..++++-.. .++...+.+.. .+...+.|+| .
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lpy 311 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLPY 311 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEecccccccccccccc
Confidence 6789999999987543110 0 22344554331 23333444433 4445555544 2
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+-.++.++ ...|++||.++-.++..... -+...++.++|++||..+++.+.||...+..++..+.
T Consensus 312 rlvfaiAt-~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 312 RLVFAIAT-KNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred ceEEEEee-cceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 22344444 46799999999888776643 2344689999999999999999999988887776543
No 149
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.85 E-value=1.5e-19 Score=184.59 Aligned_cols=302 Identities=16% Similarity=0.172 Sum_probs=223.5
Q ss_pred eeecccCCCCceEEEEcCCCc--eeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC-CCCE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQH--TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP-DGSL 402 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~--~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp-dg~~ 402 (1084)
.....-|.+.|++++|+|... ++|+|..- |+|-+||+.+..... ...++..|..+|.++.|+| +-..
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~---------G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKG---------GQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCC---------CcEEEEecCCCCCccCceEEeccCCccccceEecCCChhh
Confidence 344567788999999999764 66665333 999999995333222 2235788999999999999 5678
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVY 481 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~ 481 (1084)
+.+.+.||+|+.-|++++.. ..+..+......+..+.|+.+.. .++.+..=|...+||.+++.. ...+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~-e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNIS-EEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhh-HHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 88999999999999998643 22223434556788889998888 677777777999999997765 566778999999
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCce----EeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-- 555 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-- 555 (1084)
+++++|-.. .+++|++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. +..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999988754 79999999999999999875443 345677889999999998888887765 7779999983
Q ss_pred --CceEeeeeeccccccC--ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE
Q 001403 556 --EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 556 --~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 631 (1084)
.-.....+.....++. ...-..|.|+..++++|..-..|-|+|-..++.+..+.......-..-..|+|-+..+++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~a 481 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAA 481 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceec
Confidence 2233333332221111 234467999999999999999999999999998877654433222234579997774554
Q ss_pred -EECCCeEEEEEcCC
Q 001403 632 -IANENRIKILETPE 645 (1084)
Q Consensus 632 -~~~dg~i~iwd~~~ 645 (1084)
++..|.|+||..+.
T Consensus 482 G~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 482 GGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCccceEEEEecCC
Confidence 45578898886543
No 150
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.85 E-value=3e-20 Score=189.22 Aligned_cols=252 Identities=15% Similarity=0.189 Sum_probs=194.1
Q ss_pred CeEEEEEcC-------CCCEEEEEeCCCEEEEEEccCCccccceeee------------------ecccccEeEEEeecC
Q 001403 390 SVNRVVWSP-------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAP 444 (1084)
Q Consensus 390 ~V~~v~fsp-------dg~~las~~~dg~v~iwd~~~~~~~~~~~~l------------------~~h~~~V~~l~~s~d 444 (1084)
...|++|-. -|+|+|.|..|..|.|||+.--..+.+...| .+|+..|.+++|+..
T Consensus 175 fPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~ 254 (463)
T KOG0270|consen 175 FPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRN 254 (463)
T ss_pred cchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccc
Confidence 335666633 3789999999999999998743332222222 279999999999988
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
-+. +|+|||.|.+|++||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+..........-.+.|
T Consensus 255 ~~n-VLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 255 FRN-VLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred cce-eEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 776 8999999999999999999999999999999999999976 45899999999999999998533322222234578
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 602 (1084)
..++|.|.....+.++. .+|+|+-+|++. ++++.+++.|. ++|.++++++... .+++++.|+.|++|++..-
T Consensus 333 Ekv~w~~~se~~f~~~t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~ 406 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVST---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVD 406 (463)
T ss_pred EEEEecCCCceeEEEec---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCC
Confidence 89999998887777764 278899999987 48899999988 8999999988754 5677999999999998754
Q ss_pred eEEEEEcCCCCCCCcceEEEecCC-CEEEEEECCCeEEEEEcCCCCee
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
.........-......|.++.|+- -.++.|+..+.++|||+.+...+
T Consensus 407 ~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 407 SPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred CCcccccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 432222211112234566777754 46778888889999999877544
No 151
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=1.2e-19 Score=192.54 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=202.4
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
...|+.+..+|.|.++|.....+. ++... +.. . ..|.+.|..+.+-|....|++++ |.+
T Consensus 64 eHiLavadE~G~i~l~dt~~~~fr---------------~ee~~-lk~--~--~aH~nAifDl~wapge~~lVsasGDsT 123 (720)
T KOG0321|consen 64 EHILAVADEDGGIILFDTKSIVFR---------------LEERQ-LKK--P--LAHKNAIFDLKWAPGESLLVSASGDST 123 (720)
T ss_pred cceEEEecCCCceeeecchhhhcc---------------hhhhh-hcc--c--ccccceeEeeccCCCceeEEEccCCce
Confidence 344677777899999986543321 11100 111 1 14999999999999666777776 789
Q ss_pred EEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-------------------------
Q 001403 817 ISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE------------------------- 869 (1084)
Q Consensus 817 i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~------------------------- 869 (1084)
+++||+++.++... +.+|.+.+.+++|.|.+...+++|+.||.|.|||+....
T Consensus 124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~ 203 (720)
T KOG0321|consen 124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL 203 (720)
T ss_pred eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence 99999999998877 899999999999999888999999999999999986321
Q ss_pred --eeeeecccccCEEE---EEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeee---eeecCCCCccCCCCceEEEEccCC
Q 001403 870 --VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCR---SLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 870 --~~~~l~~h~~~V~~---l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... .......+..-.-.++++.....|
T Consensus 204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG 283 (720)
T KOG0321|consen 204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG 283 (720)
T ss_pred hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence 01222345555665 666678899999988 999999999874422111 011111111112357788888888
Q ss_pred CEEEE-EeCCeEEEEEcCCccee-eEeecCCC-CC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCC
Q 001403 941 TRFLL-VHETHLAIYEAEELTCL-KQWFPISS-VP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1016 (1084)
Q Consensus 941 ~~la~-~~d~~i~vwd~~~~~~~-~~~~~~h~-~~-v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1016 (1084)
.+|.+ +.|+.|+.|++.+-..- ...+.++. .. -..-..|||+.+|++|+.|....+|.+.+.+.--.+. +
T Consensus 284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l----~-- 357 (720)
T KOG0321|consen 284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL----L-- 357 (720)
T ss_pred CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh----h--
Confidence 88887 79999999999754432 11122331 11 1123468999999999999999999999876542222 1
Q ss_pred CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1017 TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1017 ~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+..+...+++|.|.+-..++++++|..+++|++..
T Consensus 358 ---Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 358 ---GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred ---CcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 22344557778887667889999999999999943
No 152
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=4.3e-21 Score=206.14 Aligned_cols=238 Identities=12% Similarity=0.215 Sum_probs=213.5
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
....|...|.++..-..++.+++|.|| ..+-+|.+........ +.+|+.+|.++.|+++..+|++|+.
T Consensus 23 ~~~~hsaav~~lk~~~s~r~~~~Gg~~---------~k~~L~~i~kp~~i~S---~~~hespIeSl~f~~~E~Llaagsa 90 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKIRKSSRSLVTGGED---------EKVNLWAIGKPNAITS---LTGHESPIESLTFDTSERLLAAGSA 90 (825)
T ss_pred hhhhhhhhhceeeeeccceeeccCCCc---------eeeccccccCCchhhe---eeccCCcceeeecCcchhhhccccc
Confidence 345788889999988888999999988 7788888876544443 7889999999999999999999999
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
+|+|++||++.++.++ +|.+|...+.++.|+|-+. +.++|+.|+.+++||.+...+.+.+.+|...|..+.| .
T Consensus 91 sgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~l--s 163 (825)
T KOG0267|consen 91 SGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRL--S 163 (825)
T ss_pred CCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEee--c
Confidence 9999999999987777 7889999999999999999 7899999999999999988999999999999999999 5
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
++|.++++++.|.++++||...++....+..|...+.++.|+|..-+++.|+. +.++.+||+++.+.+.......
T Consensus 164 P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~~~~- 238 (825)
T KOG0267|consen 164 PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGKPET- 238 (825)
T ss_pred CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccCCcc-
Confidence 58899999999999999999999999999999999999999999999998886 7779999999988888777766
Q ss_pred ccCceEEEEEcCCCCEEEEEECCC
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDH 592 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg 592 (1084)
..|.+.+|+|++..+++|....
T Consensus 239 --~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 239 --DGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred --CCceeeeecCCceeeecCchhh
Confidence 8899999999999988876543
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=2.2e-19 Score=184.43 Aligned_cols=289 Identities=14% Similarity=0.187 Sum_probs=219.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE--eCCCEEEEEEccCCcc-ccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~--~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+++||+...+..-... -......+.++.|+.... |+++ +.|..|++|.-..... +.....+.+. .-.|++.
T Consensus 12 d~~kl~D~s~~~~~~~~~-~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd--~~~Cv~~ 87 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSEYV-HQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGD--NAFCVAC 87 (673)
T ss_pred CceEEeecccccCccccc-cCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccc--hHHHHhh
Confidence 678999997644332211 011233589999998764 4444 5677889997654311 1111122222 2334444
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP- 520 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~- 520 (1084)
..... ++++|+..+.|+|||++...+.+.+++|...|+++.+.. ...+|++++..|.|.+..+.++.....+...
T Consensus 88 ~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s 163 (673)
T KOG4378|consen 88 ASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS 163 (673)
T ss_pred hhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEEecccCccccceecCC
Confidence 33344 899999999999999998888889999999999999854 5579999999999999999988877777766
Q ss_pred CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEEC
Q 001403 521 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM 599 (1084)
Q Consensus 521 ~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~ 599 (1084)
+..+.-+.|++..+.++....+ +|.|.+||+....++..+.. .|..+...++|+|.+. .|++.+.|..|.+||.
T Consensus 164 gqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~ 238 (673)
T KOG4378|consen 164 GQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEALLVSVGYDKKINIYDI 238 (673)
T ss_pred CCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccceEEEecccceEEEeec
Confidence 4466789999999887766542 78899999988777655543 2348889999999765 5566899999999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCc
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
...+....+.... +...++|+++|.+|+.|...|.|..||+... .++..+..|...|++++|-|...
T Consensus 239 ~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~t 306 (673)
T KOG4378|consen 239 RSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSPT 306 (673)
T ss_pred ccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEeeecce
Confidence 9887777776543 3689999999999999999999999999865 67888899999999999987653
No 154
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.84 E-value=8e-20 Score=198.22 Aligned_cols=290 Identities=13% Similarity=0.184 Sum_probs=222.5
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC----CCCeEEEEEcC-CCCEEEEEeCCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP----GVSVNRVVWSP-DGSLLGVAYSKH 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h----~~~V~~v~fsp-dg~~las~~~dg 410 (1084)
...++...+|-..++.+ |. ..++||.+..........+..+- .-.+..|.|+. +.++||+++..|
T Consensus 41 ~~nAIs~nr~~~qiv~A------Gr----s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG 110 (839)
T KOG0269|consen 41 KANAISVNRDINQIVVA------GR----SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNG 110 (839)
T ss_pred ccceEeecCCcceeEEe------cc----cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCC
Confidence 55677778888777775 22 56677777543332221111011 12455678876 678999999999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
.|.+||+.....-+.+..+..|...|+++.|++.... +|++||.||+|++||++..+-..++.+....|..+.|+|..
T Consensus 111 ~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~- 188 (839)
T KOG0269|consen 111 VISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGY- 188 (839)
T ss_pred cEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhceeeccCC-
Confidence 9999999873222333478899999999999998877 89999999999999999999999999999999999999875
Q ss_pred CcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
+..++++...|.+++||++... ....+..|.+++.++.|+|++.+||+||. |..|+|||..+++......-+.
T Consensus 189 ~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~tInT-- 262 (839)
T KOG0269|consen 189 GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKHTINT-- 262 (839)
T ss_pred CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCccceeEEee--
Confidence 6899999999999999998754 46678999999999999999999999986 6679999998766554444433
Q ss_pred cCceEEEEEcCCCCEE-EEEE--CCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEcC
Q 001403 570 HNSVSVVHFDTAKDQI-LAAG--DDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l-~~~~--~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..++..+.|-|+..+. ++++ .|-.|+|||++.. -+..++..|. ..+..++|.. |...+.+++.||++..-..+
T Consensus 263 iapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 263 IAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccC--ccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 4689999999987654 4443 6889999999764 3445566554 4578888876 56678888888887665544
Q ss_pred C
Q 001403 645 E 645 (1084)
Q Consensus 645 ~ 645 (1084)
+
T Consensus 341 n 341 (839)
T KOG0269|consen 341 N 341 (839)
T ss_pred c
Confidence 3
No 155
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.84 E-value=3.2e-19 Score=183.24 Aligned_cols=293 Identities=16% Similarity=0.201 Sum_probs=215.3
Q ss_pred EEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE--ECCCeEEEEEcCCCCeeeeccccccceeEEE
Q 001403 586 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKLS 663 (1084)
Q Consensus 586 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 663 (1084)
.+++....+++||.........+..+...+.+.++.|+.... |+++ +.|..+++|.-..... .
T Consensus 6 ~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--~------------ 70 (673)
T KOG4378|consen 6 HVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--E------------ 70 (673)
T ss_pred eeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--c------------
Confidence 334444579999998877777776666667789999988664 4443 4477788886443200 0
Q ss_pred EcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEE
Q 001403 664 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA 743 (1084)
Q Consensus 664 ~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~ 743 (1084)
|-+-... ....-.|++......++++
T Consensus 71 --------------------------------------Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~s 96 (673)
T KOG4378|consen 71 --------------------------------------VPRVRKL----------------TGDNAFCVACASQSLYEIS 96 (673)
T ss_pred --------------------------------------cceeecc----------------ccchHHHHhhhhcceeeec
Confidence 0000000 0011123333344478999
Q ss_pred eecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEc
Q 001403 744 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 822 (1084)
Q Consensus 744 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~ 822 (1084)
++..+.|+|||+... +....+. +|...|+++.+.....|||++++ |.|.|..+
T Consensus 97 gG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~~ 150 (673)
T KOG4378|consen 97 GGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHGT 150 (673)
T ss_pred cCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEec
Confidence 999999999987632 1111232 48999999999999999999995 88999999
Q ss_pred CCceeEEEEcCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee-ecccccCEEEEEEcCC-CCEEEEEeCC
Q 001403 823 MTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDA-LNILVSSGGD 899 (1084)
Q Consensus 823 ~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~-l~~h~~~V~~l~~spd-~~~l~s~s~d 899 (1084)
.++....+|....+ .+.-+.|+|....+|.+++++|.|.+||+....++.. .+.|+.+...++|+|. ..+||+.|.|
T Consensus 151 ~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~D 230 (673)
T KOG4378|consen 151 KTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYD 230 (673)
T ss_pred ccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEeccc
Confidence 99988888876544 5568999996667888999999999999987766654 4579999999999994 5788899999
Q ss_pred CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 900 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 900 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
..|.+||+............ .+.+.++|+++|.+|++| ..|.|..||++..+........|...|++++|
T Consensus 231 kki~~yD~~s~~s~~~l~y~---------~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vaf 301 (673)
T KOG4378|consen 231 KKINIYDIRSQASTDRLTYS---------HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVAF 301 (673)
T ss_pred ceEEEeecccccccceeeec---------CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEEe
Confidence 99999999874422211111 157899999999999996 78999999999777666667789999999999
Q ss_pred ccCC
Q 001403 979 SCDC 982 (1084)
Q Consensus 979 s~dg 982 (1084)
-+..
T Consensus 302 q~s~ 305 (673)
T KOG4378|consen 302 QPSP 305 (673)
T ss_pred eecc
Confidence 8764
No 156
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=2.6e-20 Score=211.74 Aligned_cols=299 Identities=15% Similarity=0.242 Sum_probs=229.8
Q ss_pred eEEEEcCCCc-eeeee----cccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE----EEEE
Q 001403 338 MSMDFHPVQH-TLLLG----LWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL----LGVA 406 (1084)
Q Consensus 338 ~~v~~spdg~-~las~----~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~----las~ 406 (1084)
..++|||++. +||+| ..|..-+ .+.++.||.+.-..... +..---.-......++|++.|.. ||.|
T Consensus 10 a~~awSp~~~~~laagt~aq~~D~sfs---t~~slEifeld~~~~~~dlk~~~s~~s~~rF~kL~W~~~g~~~~GlIaGG 86 (1049)
T KOG0307|consen 10 ATFAWSPASPPLLAAGTAAQQFDASFS---TSASLEIFELDFSDESSDLKPVGSLQSSNRFNKLAWGSYGSHSHGLIAGG 86 (1049)
T ss_pred ceEEecCCCchhhHHHhhhhccccccc---cccccceeeecccCccccccccccccccccceeeeecccCCCccceeecc
Confidence 4579999997 77773 3342211 13666777764322211 10000112457889999998776 8889
Q ss_pred eCCCEEEEEEccC---CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec--cCCCcEE
Q 001403 407 YSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHGAPVY 481 (1084)
Q Consensus 407 ~~dg~v~iwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~--~h~~~v~ 481 (1084)
..||.|.+||... +.....+.....|.+.|..+.|++.... +|++|+.||.|.|||+..-+.-.+.. ...+.|.
T Consensus 87 ~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~ 165 (1049)
T KOG0307|consen 87 LEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPFTPGSQAPPSEIK 165 (1049)
T ss_pred ccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCCCCCCCCCcccce
Confidence 9999999999876 4444445577789999999999999876 89999999999999998755544442 2457899
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ce
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GA 558 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~ 558 (1084)
+++|+.. ..+.|++++.+|++.|||++..+.+..+..+.. .+..++|+|+...-+....+.++...|.+||++. ..
T Consensus 166 ~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~ass 244 (1049)
T KOG0307|consen 166 CLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASS 244 (1049)
T ss_pred Eeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCC
Confidence 9999643 457899999999999999999888877766654 5788999998865444444556688999999875 45
Q ss_pred EeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg 636 (1084)
.++.+++|. ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|... .+++++-||
T Consensus 245 P~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P~~~A~asfdg 319 (1049)
T KOG0307|consen 245 PLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNPSVMAAASFDG 319 (1049)
T ss_pred chhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCcchhhhheecc
Confidence 677788888 899999999987 7888899999999999999999999986544 588999999554 889999999
Q ss_pred eEEEEEcCCC
Q 001403 637 RIKILETPES 646 (1084)
Q Consensus 637 ~i~iwd~~~~ 646 (1084)
.|.|+.+.+.
T Consensus 320 kI~I~sl~~~ 329 (1049)
T KOG0307|consen 320 KISIYSLQGT 329 (1049)
T ss_pred ceeeeeeecC
Confidence 9999998865
No 157
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.84 E-value=9.7e-17 Score=186.67 Aligned_cols=372 Identities=25% Similarity=0.418 Sum_probs=276.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-cccceeeeeccc-ccEeEEEe-ecCCCcEEEEEEeCCCcEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV-GNVNDLAF-SAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~-~~V~~l~~-s~d~~~l~l~s~~~d~~i~ 460 (1084)
...|...+.++.|.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ ++++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 45689999999999999999999999999999999875 232 444533 36777777 7777632333344599999
Q ss_pred EEECCC-CceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 461 VWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 461 vwd~~~-g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
+||... ......+..|...|..++|++ ++..+++++. |+.+++|+.........+..+...+.+++|+|++..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECC--CCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999988 788889999999999999965 5557888875 999999999987778888888999999999999984444
Q ss_pred E-eeCCCCCeeEEEecCCCceEee-eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-EEEEcCCCCCC
Q 001403 539 C-GTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-LTTIDAGGGLP 615 (1084)
Q Consensus 539 ~-~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~ 615 (1084)
+ +. ++.+.+||...+.... .+.+|. ... ...|+|++..+++++.|+.+++|+...... ...+..+ ..
T Consensus 216 ~~~~----d~~i~~wd~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~ 285 (466)
T COG2319 216 SGSS----DGTIRLWDLSTGKLLRSTLSGHS---DSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SS 285 (466)
T ss_pred EecC----CCcEEEEECCCCcEEeeecCCCC---cce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecC--Cc
Confidence 3 43 6668899988888877 577776 443 338999998999999999999999987665 4444323 45
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+.++.|.|++..+++++.|+.+.+|+...........
T Consensus 286 ~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~------------------------------------------ 323 (466)
T COG2319 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLT------------------------------------------ 323 (466)
T ss_pred cEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEee------------------------------------------
Confidence 68899999988888888888889999776543222111
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
..
T Consensus 324 --------------------------~~---------------------------------------------------- 325 (466)
T COG2319 324 --------------------------LK---------------------------------------------------- 325 (466)
T ss_pred --------------------------ec----------------------------------------------------
Confidence 00
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE--eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
.|...+..+.+.+++..++.+ .++.+.+|+............. ..+..+.+++ + ..++.
T Consensus 326 ----------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~ 386 (466)
T COG2319 326 ----------------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVS 386 (466)
T ss_pred ----------------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEE
Confidence 022233334442122333333 2456666777665522222222 2278889998 6 55554
Q ss_pred -EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 854 -GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 854 -g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+..++.+.+|+............+...+....+++++..+++++.++++++|+...
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 387 SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred EecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 88999999999998887777665547899999999999999999999999999987
No 158
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=9.9e-19 Score=170.72 Aligned_cols=406 Identities=11% Similarity=0.130 Sum_probs=259.1
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
-++|||+|+|+|+++.- .+.|-|.++-+..+. ..--..|..+.|..|... .+.....|+.|.+|++...+-..+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~ql----f~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQL----FLCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHH----HHHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 47899999999999877 688899888654432 223456889999999885 455667899999999999998889
Q ss_pred eccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 473 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
+..-..++.+++|+| || ..|.+...+-.|.+|.+.+..... +......+..++|+|||++.+.++.- |-...+.+
T Consensus 87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~-~~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i 162 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYL-LPHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI 162 (447)
T ss_pred eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEE-ecccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence 988889999999965 55 567778889999999998765543 33444566899999999999998742 22223333
Q ss_pred ecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEE
Q 001403 552 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 552 wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~ 631 (1084)
........++.+.... -..+.+.|+|||+.+++ ||.--.-.+...+..- .+..++|+|.++++++
T Consensus 163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe~~l---G~k~v~wsP~~qflav 227 (447)
T KOG4497|consen 163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERGL---GLKFVEWSPCNQFLAV 227 (447)
T ss_pred HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeeeecc---ceeEEEeccccceEEe
Confidence 3333334445555544 56788999999988775 4322211111222111 3788999999999999
Q ss_pred EECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeec
Q 001403 632 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 711 (1084)
Q Consensus 632 ~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~ 711 (1084)
|+.|+.+|+.+--+-+.+..+- |...+ .|.+..+-..++..
T Consensus 228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~ 268 (447)
T KOG4497|consen 228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS 268 (447)
T ss_pred eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence 9999999997755443332221 10000 01110000000000
Q ss_pred CccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee--ecCCCCCccccccCc
Q 001403 712 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT 789 (1084)
Q Consensus 712 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 789 (1084)
. -.-...++.|.|..- ...+|....... ......+++ ..+.+ +.
T Consensus 269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~t-------D~- 314 (447)
T KOG4497|consen 269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPT-------DF- 314 (447)
T ss_pred h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCC-------CC-
Confidence 0 000112233333211 011111000000 000000000 00000 01
Q ss_pred CCCCCCCccEEEecCCCCEEEEEeC---CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 790 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~~l~~~sd---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.+..-.+.-++||+|..++++-.| +.+.+||++..+....+. ...+|.+..|.| ....|+.+.....+++|...
T Consensus 315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps 391 (447)
T KOG4497|consen 315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS 391 (447)
T ss_pred -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence 124556788999999999999985 679999998776655544 456899999999 77778878777789999987
Q ss_pred CceeeeeecccccCEEEEEEcCCCCEEEEEeCCC
Q 001403 867 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 900 (1084)
Q Consensus 867 ~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg 900 (1084)
....+.. .+..-.|..+.|.-+|..++..+.|.
T Consensus 392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred CceEEec-CCCCceeeeEEecCCCcEEEEEcCCc
Confidence 5454433 33335799999999999999999886
No 159
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.5e-18 Score=168.49 Aligned_cols=267 Identities=15% Similarity=0.200 Sum_probs=196.1
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC--CCCEEEEEe
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP--DGSLLGVAY 407 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp--dg~~las~~ 407 (1084)
.+|.+-|.++.|.+-|+++|+++.| ++|+|||........ ...-.+.|.+.|..|.|.+ -|+.+|+++
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsD---------q~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS 80 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSD---------QTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS 80 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCC---------CcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe
Confidence 5899999999999999999999998 999999975433322 1223667999999999976 699999999
Q ss_pred CCCEEEEEEccC------CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc------eeeEec-
Q 001403 408 SKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS------RTYSFE- 474 (1084)
Q Consensus 408 ~dg~v~iwd~~~------~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~------~~~~~~- 474 (1084)
.|+++.||.-.. +..-....++......|+.+.|.|....+.+++++.||.++||+.-.-. ..+++.
T Consensus 81 ~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~ 160 (361)
T KOG2445|consen 81 YDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQN 160 (361)
T ss_pred cCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhh
Confidence 999999998631 1112233356677789999999999887799999999999999865432 223333
Q ss_pred ------cCCCcEEEEeecccCC-CcEEEEEecC-----CeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCC----C
Q 001403 475 ------GHGAPVYSLCPHAKEN-IHFIFSISVD-----GKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANG----R 534 (1084)
Q Consensus 475 ------~h~~~v~~~~~~~~~~-~~~l~s~s~d-----g~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~----~ 534 (1084)
.+..+..|+.|+++.- ..+|+.|+.+ +.+.||....... ..++..+..+|+.++|.|+- .
T Consensus 161 ~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~ 240 (361)
T KOG2445|consen 161 VIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYH 240 (361)
T ss_pred ccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCcee
Confidence 4667788888876533 2467777665 4789998776553 23567888899999999953 3
Q ss_pred EEEEEeeCCCCCeeEEEecCCCce-----------------EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
.||+++. +| |+||++.... .+..+..+..|.+.|..+.|+-.|..|.+.|.||.|++|
T Consensus 241 ~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLW 315 (361)
T KOG2445|consen 241 LLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLW 315 (361)
T ss_pred eEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeeh
Confidence 5666654 44 9999887311 122222233344999999999999999999999999999
Q ss_pred ECCC---CeEEEEEcCC
Q 001403 598 DMNK---VQLLTTIDAG 611 (1084)
Q Consensus 598 d~~~---~~~~~~~~~~ 611 (1084)
...- .++...+...
T Consensus 316 kany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 316 KANYNNLWKCTSVLKAE 332 (361)
T ss_pred hhhhhhhheeeeEEecc
Confidence 7643 2344444443
No 160
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=4e-19 Score=173.85 Aligned_cols=299 Identities=15% Similarity=0.206 Sum_probs=206.8
Q ss_pred cccceEEEEEEec----CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 724 VKANKISRLTYNN----GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 724 ~~~~~i~~l~~s~----~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
.|..+|..++|.+ +...+++......+.+|+.+... .+++. .. .....+......
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~-----------~ir~l---------q~-y~D~d~~Esfyt 94 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDG-----------GIRLL---------QS-YADEDHDESFYT 94 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCcc-----------ceeee---------ee-ccCCCCCcceEE
Confidence 3667888888874 33445566666688888876431 11111 11 111135566666
Q ss_pred EEecCC----CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 800 FALSKN----DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 800 l~~s~d----g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
++|+-| .-++|+++ -|.|+|.|..+++....+.+|...|..+.+.|++.++|++++.|.+|++|++.+..++..+
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 777654 33566665 5999999999999999999999999999999987899999999999999999999998776
Q ss_pred ---cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee-------------eeeecCCCCcc-------CCCCc
Q 001403 875 ---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-------------RSLQTPDGVMT-------LAPSE 931 (1084)
Q Consensus 875 ---~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~-------------~~~~~~~~~~~-------~~~~v 931 (1084)
.||.+.|.++.|+++|.+++|+|.|.+|++|++...+.... ..+.....|.. +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999999999999999999999999995332110 00111111110 01122
Q ss_pred eEEEEccCCCEEEE-EeCCeEEEEEc-CCcceeeEe------------ecCCCCCEEEEEEcc--CCCEEEEEeCCCcEE
Q 001403 932 THIQFHKDQTRFLL-VHETHLAIYEA-EELTCLKQW------------FPISSVPISQATFSC--DCRMVFTSFVDGTLS 995 (1084)
Q Consensus 932 ~~~~~s~dg~~la~-~~d~~i~vwd~-~~~~~~~~~------------~~~h~~~v~~l~fs~--dg~~l~t~~~dg~i~ 995 (1084)
.++.|- |.++++ +.++.|..|.. +-++.+... +.-....|.-+.|+- -+++||.|...|.|.
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~ 332 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVY 332 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEE
Confidence 333322 577777 78889999987 222222111 111255667776655 578999999999999
Q ss_pred EEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 996 IHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 996 vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
+||++..+.... ..+..+..+..|+ ..+|+. |+..|+..++||.|.-||.
T Consensus 333 vwdL~~~ep~~~----ttl~~s~~~~tVR--Q~sfS~-dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 333 VWDLDNNEPPKC----TTLTHSKSGSTVR--QTSFSR-DGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred EEECCCCCCccC----ceEEeccccceee--eeeecc-cCcEEEEEeCCCcEEEEEe
Confidence 999998876411 1112222244455 456776 6899999999999999985
No 161
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.83 E-value=1e-18 Score=171.01 Aligned_cols=292 Identities=16% Similarity=0.269 Sum_probs=212.5
Q ss_pred eecccCCCCceEEEEcC-----CCceeeeecccccCccccccceEEEEEcCCcc--ccceeeeecCCCCCeEEEEEcCCC
Q 001403 328 QTLIEGSSSPMSMDFHP-----VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS--MLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~sp-----dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~--~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+..++|...|..++|.+ .-+.+|+. |. ..+.||...... ..++...-.+|......++|+-|.
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatv------G~----~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~ 101 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATV------GG----NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDS 101 (385)
T ss_pred ehhccCCCccceeeeehhcCCCCCceEEEe------CC----cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecC
Confidence 34568888999999984 22444443 22 678888876543 444443334578888899998753
Q ss_pred ----CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 401 ----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 401 ----~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
-+||+++.-|.|+|.|+.++++.. .+.+|...|+.+.|.|+..+ ++++++.|.+|++||+++..++..|
T Consensus 102 ~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG~ 177 (385)
T KOG1034|consen 102 NTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGGV 177 (385)
T ss_pred CCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEeccc
Confidence 489999999999999999998766 68899999999999999877 8999999999999999999999877
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE------ee----------------------cCCCCeEE
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAPGLGCT 525 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~------~~----------------------~~~~~~i~ 525 (1084)
.+|.+.|.++.|+. +|.++++++.|..+++|++...+... .+ ..|...|.
T Consensus 178 egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVD 255 (385)
T KOG1034|consen 178 EGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVD 255 (385)
T ss_pred ccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHH
Confidence 67999999999955 66799999999999999997432111 00 01111222
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecC-CCceE-------------eeeeeccccccCceEEEE--EcCCCCEEEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVVH--FDTAKDQILAAG 589 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~-~~~~~-------------~~~~~~~~~~~~~v~~~~--~s~~~~~l~~~~ 589 (1084)
|+.|- |+++++-+. ++.|..|.. +-++. +..+.... ..+.-+. |.|-++.|+.|.
T Consensus 256 Cvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~---c~iWfirf~~d~~~~~la~gn 326 (385)
T KOG1034|consen 256 CVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM---CDIWFIRFAFDPWQKMLALGN 326 (385)
T ss_pred HHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCc---cceEEEEEeecHHHHHHhhcc
Confidence 22222 455655443 567999987 21111 22222222 4555554 456688999999
Q ss_pred CCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..|.|++||++..+.. .++........|...+|+.||..|+...+|++|.-||..
T Consensus 327 q~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 327 QSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 9999999999876652 333333344568899999999999999999999999854
No 162
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.83 E-value=4.4e-19 Score=188.34 Aligned_cols=289 Identities=15% Similarity=0.161 Sum_probs=213.7
Q ss_pred EEEEcC---CCCEEEEEeCCCEEEEEEccCCccc---cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 393 RVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 393 ~v~fsp---dg~~las~~~dg~v~iwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
++.|++ ....||.+..||.|.++|....... +++.....|...|..+.|.| |+. .|++++.|.++++||+++
T Consensus 54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wap-ge~-~lVsasGDsT~r~Wdvk~ 131 (720)
T KOG0321|consen 54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAP-GES-LLVSASGDSTIRPWDVKT 131 (720)
T ss_pred cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCC-Cce-eEEEccCCceeeeeeecc
Confidence 366766 3568899999999999998764321 22335668999999999999 543 799999999999999999
Q ss_pred CceeeE--eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---------------------------Eee
Q 001403 467 GSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---------------------------VDY 517 (1084)
Q Consensus 467 g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---------------------------~~~ 517 (1084)
+++... +.||.+.|.++||.+. |...+++|+.||.|.|||++..... ...
T Consensus 132 s~l~G~~~~~GH~~SvkS~cf~~~-n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~ 210 (720)
T KOG0321|consen 132 SRLVGGRLNLGHTGSVKSECFMPT-NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKW 210 (720)
T ss_pred ceeecceeecccccccchhhhccC-CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccc
Confidence 998876 8999999999999876 4478999999999999998643210 011
Q ss_pred cCCCCeEEE---EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee--------eeccccccCceEEEEEcCCCCEEE
Q 001403 518 DAPGLGCTR---MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT--------YQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 518 ~~~~~~i~~---~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~--------~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
..+...|.+ +.+..|...||+++. +|+.|.+||++....... +..+......+.++.....|.+++
T Consensus 211 kA~s~ti~ssvTvv~fkDe~tlaSaga---~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~ 287 (720)
T KOG0321|consen 211 KAASNTIFSSVTVVLFKDESTLASAGA---ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLF 287 (720)
T ss_pred ccccCceeeeeEEEEEeccceeeeccC---CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEE
Confidence 122334544 666789999999875 477899999987544322 222211123466777777789999
Q ss_pred EEECCCcEEEEECCCCeE--EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEE
Q 001403 587 AAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS 663 (1084)
Q Consensus 587 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~ 663 (1084)
+.+.|+.|++||+.+... +..+.++-....-..-..+||+.++++|+.|...++|.+.+. .....+.+|...|++++
T Consensus 288 AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~ 367 (720)
T KOG0321|consen 288 ASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVR 367 (720)
T ss_pred EEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEe
Confidence 988999999999986432 233332221111223457899999999999999999999876 44566788999999999
Q ss_pred EcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 664 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 664 ~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
+.|. + -.-++++++|-.+++|++.
T Consensus 368 w~pS--------------------~-~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 368 WLPS--------------------A-TTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred eccc--------------------c-CCCceeeccCcceEEEecc
Confidence 9863 2 3346677999999999985
No 163
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.82 E-value=1.1e-18 Score=178.29 Aligned_cols=308 Identities=13% Similarity=0.112 Sum_probs=221.2
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
-......+.+..+|.+++|.|. .+.+++++|+..|.|-+|++.+..+.......+. .|
T Consensus 176 ~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--~h 233 (498)
T KOG4328|consen 176 YRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--PH 233 (498)
T ss_pred ceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec--cC
Confidence 3444556677888999999985 3456788899999999999975444444333333 38
Q ss_pred cceEEEEEEecCC-CeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+|.++.|+|.. ..+++.+.||+|++-|+...... . +.... .....+..+.|+.
T Consensus 234 s~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e-----------~---------v~s~~----~d~~~fs~~d~~~ 289 (498)
T KOG4328|consen 234 SGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISE-----------E---------VLSLD----TDNIWFSSLDFSA 289 (498)
T ss_pred CccccceEecCCChhheeeeccCceeeeeeecchhhH-----------H---------HhhcC----ccceeeeeccccC
Confidence 9999999999964 56889999999999887654220 0 11100 1345667788888
Q ss_pred CCCEEEEEeC-CeEEEEEcCCcee-EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeecccc
Q 001403 805 NDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHS 878 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~ 878 (1084)
+...++.+.+ |...+||+.++.. ...+.-|...|+.++++|-...+||+++.|++++|||+..-. ++-....|.
T Consensus 290 e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~Hr 369 (498)
T KOG4328|consen 290 ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHR 369 (498)
T ss_pred CCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccccc
Confidence 8888888875 8999999987554 666777888999999999888899999999999999997632 122234599
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCC---CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEE
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY 954 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vw 954 (1084)
..|.+..|||++..|+|.+.|..|+|||.. .... ....+.....+.. --......|.||..+++++ .-..|-|+
T Consensus 370 rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~-p~~~I~Hn~~t~R-wlT~fKA~W~P~~~li~vg~~~r~IDv~ 447 (498)
T KOG4328|consen 370 RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDE-PLGTIPHNNRTGR-WLTPFKAAWDPDYNLIVVGRYPRPIDVF 447 (498)
T ss_pred ceeeeeEEcCCCCceEeeccCCceEEeecccccccCC-ccceeeccCcccc-cccchhheeCCCccEEEEeccCcceeEE
Confidence 999999999999889999999999999995 2111 1111211111100 0135567899999999997 56679999
Q ss_pred EcCCcceeeEeecCCCCCEEE-EEEccCCC-EEEEEeCCCcEEEEEcCC
Q 001403 955 EAEELTCLKQWFPISSVPISQ-ATFSCDCR-MVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~-~l~t~~~dg~i~vwd~~~ 1001 (1084)
|-..++.+.++.......|.+ ..|.|-+. +++-++..|.|.||--+.
T Consensus 448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence 999888887755444445555 46888766 444445567788876543
No 164
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.7e-17 Score=179.72 Aligned_cols=565 Identities=14% Similarity=0.135 Sum_probs=330.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC----------CCcEEEEEEeCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDD 456 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d----------~~~l~l~s~~~d 456 (1084)
|...-.++.|+|.| +||.|+.. .|.+-|..+-+.++ .+.-|...|+.+.|.|- ..+++++++...
T Consensus 14 ~~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~ 88 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADIS 88 (1062)
T ss_pred CcccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEecccc
Confidence 33446778999987 67777655 48899988876655 78889999999999763 245678889999
Q ss_pred CcEEEEECCCCceeeEeccCCCcEEEEeecccCCC--cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CC
Q 001403 457 KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NG 533 (1084)
Q Consensus 457 ~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~--~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~ 533 (1084)
|.|.+||...+..+..+..|.+++..++|.+..+. .+|+.-....++.+|+.++++.............++.+.| |.
T Consensus 89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDS 168 (1062)
T ss_pred CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCc
Confidence 99999999999999999999999999999776543 4777778888999999999998888777776777788888 44
Q ss_pred CEEEEEeeCCCCCeeEEEecCC-------CceEeeeeecccc-------------c-cCc--------eEEEEEcCCCCE
Q 001403 534 RRLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q-HNS--------VSVVHFDTAKDQ 584 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~-------~~~~~~~~~~~~~-------------~-~~~--------v~~~~~s~~~~~ 584 (1084)
+.+...+. .|.+.+-+.- .|+..+.-..|.. + ..+ ...++|+|.-+.
T Consensus 169 rh~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn 244 (1062)
T KOG1912|consen 169 RHFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN 244 (1062)
T ss_pred ceEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence 44444332 3344444321 1222222222210 0 000 112467888777
Q ss_pred EEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC--CEEEEEECCCeEEEEEcCCCCeeeec-----c-ccc
Q 001403 585 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAA-----G-VLS 656 (1084)
Q Consensus 585 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~-----~-~~~ 656 (1084)
++.......+.++|++-..++.......+. +.-+.+-|++ ..|.+.-.||.+.+|-.+........ . ...
T Consensus 245 ~lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~ 322 (1062)
T KOG1912|consen 245 ILFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLG 322 (1062)
T ss_pred eEEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccchhhccccc
Confidence 777777889999999998888888766553 4566676654 57899999999999987653111111 0 000
Q ss_pred cceeEEEEcCCCceeeeeccCceeEecCCCCCC-CCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe
Q 001403 657 DNLRKLSVNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 735 (1084)
Q Consensus 657 ~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 735 (1084)
..+.++ .+...... +.+...|. ...++.--.+|.+.+|.+..+.......... ..-+.. |+
T Consensus 323 ~Q~~~v--r~m~~~rp---------~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~-----iel~~p--f~ 384 (1062)
T KOG1912|consen 323 EQVHVV--RPMEEFRP---------VIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSS-----IELVLP--FD 384 (1062)
T ss_pred cceEEE--eechhccc---------ceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccc-----cccccc--cc
Confidence 111111 11111000 00000122 3344444566778888876322111100000 000000 00
Q ss_pred cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCC
Q 001403 736 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 815 (1084)
Q Consensus 736 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg 815 (1084)
-++..+..+- . . +......+ +|.....+....|-.+.-
T Consensus 385 f~~~~~~v~k-~---~-------------------------------l~~LS~dg-~h~sGs~~~~~~p~p~~t------ 422 (1062)
T KOG1912|consen 385 FNLSTKLVGK-T---S-------------------------------LISLSDDG-SHSSGSTCVRMRPMPELT------ 422 (1062)
T ss_pred ccCceeehhh-c---c-------------------------------ccchhhcC-CCCCCceeeecccCcccc------
Confidence 0000000000 0 0 00000000 133333333332211111
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
.....+.+. +....-| ++|.|...|+|.++|+.++..-..+..|.+.|.++.|.-...++-.
T Consensus 423 -------------~~~~~p~~n-~~~~~~p----LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~sslvSf 484 (1062)
T KOG1912|consen 423 -------------KVENDPGGN-TPAGTVP----LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSSLVSF 484 (1062)
T ss_pred -------------eeecCCCCC-ccceeee----eEEeecCCceEEEEEecchhhhhhhcccccceeeeeeccceeEEEe
Confidence 111111111 1122223 8999999999999999999999999999999999999866444322
Q ss_pred ---------EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEe
Q 001403 896 ---------SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW 965 (1084)
Q Consensus 896 ---------~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~ 965 (1084)
++.-+.+.+-|+.+|..+..+-++..+. .+|..+..|..|+||++. .+.-+.+||+++..+++..
T Consensus 485 sys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~de-----spI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~m 559 (1062)
T KOG1912|consen 485 SYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDE-----SPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLM 559 (1062)
T ss_pred eeccccccccceeeeEEEEEcccccccccccCCCCCc-----CcceeeeecccCceEEEEecccchHHHhhccchHHHHH
Confidence 2223457888999887544333333322 379999999999999996 6778999999887776542
Q ss_pred ecCCCCC-EEEEEEc-cCC----------------CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeE
Q 001403 966 FPISSVP-ISQATFS-CDC----------------RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 966 ~~~h~~~-v~~l~fs-~dg----------------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
. -.-+ |+.+.|+ |.- +..++.+ +..+++.+.......+-. ......- ......-.+
T Consensus 560 S--~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~es~~~~~~~~a~~~sdg-sq~~~a~-esfafal~~ 633 (1062)
T KOG1912|consen 560 S--LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VESRIYHITLSALVVSDG-SQVNTAW-ESFAFALCA 633 (1062)
T ss_pred h--hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--ccchheehhhhhhhhccc-cchhhHH-HHHHHHHHh
Confidence 2 2344 8888888 321 1223322 223333332211111100 0000000 000112234
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1028 ~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
++|- +..++.|+.+|++.+||+--
T Consensus 634 mAwk---~d~lv~GD~~GNl~~WDlg~ 657 (1062)
T KOG1912|consen 634 MAWK---DDILVVGDVEGNLVVWDLGR 657 (1062)
T ss_pred hhcc---CCeeEeecccCceeEEeccc
Confidence 6776 57999999999999999743
No 165
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=1.8e-16 Score=184.37 Aligned_cols=370 Identities=23% Similarity=0.357 Sum_probs=274.1
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEE-cCCCC-EEEE
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-SPDGS-LLGV 405 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~f-spdg~-~las 405 (1084)
.+..|...+.++.|.+++..++.+..| +.+.+|+......... .+.++. ..+..+.+ ++++. +++.
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d---------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSD---------GTIKLWDLDNGEKLIK--SLEGLHDSSVSKLALSSPDGNSILLA 128 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCC---------CcEEEEEcCCCceeEE--EEeccCCCceeeEEEECCCcceEEec
Confidence 467889999999999999999998766 9999999987751111 133322 47777777 88888 5555
Q ss_pred EeC-CCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 406 AYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 406 ~~~-dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
.+. |+.+.+|+..+ ..... .+..|...|..++|+|++. .+++++. |+.+++|++.++..+..+.+|...|.+
T Consensus 129 ~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 203 (466)
T COG2319 129 SSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS 203 (466)
T ss_pred cCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEeeccCCCceEE
Confidence 444 89999999997 43333 6779999999999999999 6777775 999999999999999999999999999
Q ss_pred EeecccCCCc-EEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-
Q 001403 483 LCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI- 559 (1084)
Q Consensus 483 ~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~- 559 (1084)
+++. +++. .+++++.|+.|++||........ .+..+.... ...|++++..+++++. ++.+++|+......
T Consensus 204 ~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~~~~~~~~~~ 276 (466)
T COG2319 204 LAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRLWDLRSSSSL 276 (466)
T ss_pred EEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEEeeecCCCcE
Confidence 9997 4555 55556999999999888655555 466666654 3389999988886664 67799999987664
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc--CCCCCCCcceEEEecCCCEEEEE-ECCC
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTLLAVI-ANEN 636 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~-~~dg 636 (1084)
...+.+|. ..+.++.|.|++..+++++.|+.+.+|+..+........ .+.. .+..+.|.+++..++.+ ..|+
T Consensus 277 ~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~ 351 (466)
T COG2319 277 LRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEG--PVSSLSFSPDGSLLVSGGSDDG 351 (466)
T ss_pred EEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCC--ceEEEEECCCCCEEEEeecCCC
Confidence 44444444 789999999998999999888999999998887776665 3333 47888884343566665 6788
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc-eecccCccccccceeecCccc
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
.+.+|+............... +..+.+.+ + .... .+..++.+.+|+.........
T Consensus 352 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (466)
T COG2319 352 TIRLWDLRTGKPLKTLEGHSN-VLSVSFSP----------------------D-GRVVSSGSTDGTVRLWDLSTGSLLRN 407 (466)
T ss_pred cEEeeecCCCceeEEecCCce-EEEEEECC----------------------C-CCEEEEecCCCceEEEecccCeeeee
Confidence 999999988762222222111 55555542 1 2222 256778899999764322211
Q ss_pred eeeccCCcccc-ceEEEEEEecCCCeEEEeecCCceEEeeccC
Q 001403 716 QSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 716 ~~~~~~~~~~~-~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 757 (1084)
.. .. ..+....+++++..++.++.++.+++|+...
T Consensus 408 ~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 408 LD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 11 11 6788899999999999988899999987543
No 166
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.82 E-value=8.6e-19 Score=174.60 Aligned_cols=253 Identities=16% Similarity=0.228 Sum_probs=183.8
Q ss_pred ecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc-------------cceeeeecCCCCCeEEEE
Q 001403 329 TLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM-------------LFKTALVRDPGVSVNRVV 395 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~-------------~~~~~~~~~h~~~V~~v~ 395 (1084)
....|.+.+..+.-++-|+-.++++|. ..|.|+||++..... ......+.+|...=..++
T Consensus 146 ~~i~h~g~~NRvr~~~~~~~~~~asws-------e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 146 KSIPHYGGINRVRVSRLGNEVLCASWS-------ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred cccccccccceeeecccCCcceeeeec-------ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 344677788888888877666666665 238999999853211 011124678999999999
Q ss_pred EcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---ceee
Q 001403 396 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTY 471 (1084)
Q Consensus 396 fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~ 471 (1084)
||| .-..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. ++++||.||+|+|||++.+ .++.
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~ 297 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVS 297 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeE
Confidence 999 2234778877778999999987654333467789999999999998877 8999999999999999988 3444
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
+ +.|.+.|+.+.|+. +-.+|++|+.||+++|||++.. ++...++.|..+|+++.|+|...-.+.++. .+.+
T Consensus 298 ~-kAh~sDVNVISWnr--~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~Q 371 (440)
T KOG0302|consen 298 T-KAHNSDVNVISWNR--REPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQ 371 (440)
T ss_pred e-eccCCceeeEEccC--CcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCc
Confidence 4 88999999999964 3359999999999999999864 456788999999999999996554444332 2778
Q ss_pred EEEecCCCceE--------e--------eeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEE
Q 001403 549 LVEWNESEGAI--------K--------RTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIW 597 (1084)
Q Consensus 549 i~~wd~~~~~~--------~--------~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iw 597 (1084)
|.+||+....- . +.+-.|. ....+..+.|++.- .++++.+.|| +.||
T Consensus 372 itiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 372 ITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred EEEEEeeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 99999863211 0 0111121 12457778888774 4566666666 3444
No 167
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.81 E-value=4.2e-18 Score=170.61 Aligned_cols=269 Identities=16% Similarity=0.241 Sum_probs=198.7
Q ss_pred CCceeeeecccccCccccccceEEEEEcC-CccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcc
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIG-ACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~-~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
+.++||. .|....| |.+.|--+. ++...-......||+++|..++|+| +...||+|+.|.+|.||.+-.+..
T Consensus 43 NPkfiAv-i~easgG-----gaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l 116 (472)
T KOG0303|consen 43 NPKFVAV-IIEASGG-----GAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGL 116 (472)
T ss_pred CCceEEE-EEecCCC-----cceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCccc
Confidence 4466666 2332222 344444443 3434444456889999999999999 778999999999999999875533
Q ss_pred ----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe
Q 001403 423 ----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 498 (1084)
Q Consensus 423 ----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s 498 (1084)
......|.+|...|.-++|+|.-.. .|++++.|.+|.+||+.+|+.+.++. |.+.|++++| +.||.++++++
T Consensus 117 ~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sf--n~dGs~l~Ttc 192 (472)
T KOG0303|consen 117 TRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSF--NRDGSLLCTTC 192 (472)
T ss_pred ccCcccceEEEeecceeEEEEeecccchh-hHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEe--ccCCceeeeec
Confidence 2345588999999999999999877 78899999999999999999999988 9999999999 45789999999
Q ss_pred cCCeEEEEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE
Q 001403 499 VDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.|+.||+||.+.++...+-..|.+ .-..+.|-.+|. +++.+.++-.+.++-+||..+-+.-..+.... ....|.--.
T Consensus 193 kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PF 270 (472)
T KOG0303|consen 193 KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPF 270 (472)
T ss_pred ccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEec-cCCceEEee
Confidence 999999999999888877755554 556677888998 66767777778899999977543222222111 124566667
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecC
Q 001403 578 FDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 578 ~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
|.+|.+.++. |-.|+.||-|.+....+ ++-+.......+-..+.|.|.
T Consensus 271 yD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPK 320 (472)
T KOG0303|consen 271 YDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPK 320 (472)
T ss_pred ecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccccccccc
Confidence 8898888766 55899999999877553 333332223333456666663
No 168
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.81 E-value=6e-18 Score=165.13 Aligned_cols=190 Identities=16% Similarity=0.196 Sum_probs=148.4
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcC-CceeEE---EE----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
..+++|+|||.+|.+|....|++||+. .|..-. ++ .+..+-|.+++|+|.+.+.+|.|+....+-||.-..+
T Consensus 161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~ 240 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR 240 (406)
T ss_pred heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC
Confidence 357899999999999988999999983 443211 11 1235678999999988889999999999999999999
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV- 946 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 946 (1084)
.++..+-+|.+.|+.+.|.+||+.|.+|+. |-.|..||+.... ..+-.+..|......-.-....|+|++||+|
T Consensus 241 ~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~ 316 (406)
T KOG2919|consen 241 RPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGD 316 (406)
T ss_pred CceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccC
Confidence 999999999999999999999999999875 6779999998733 2233333333311222345567899999997
Q ss_pred eCCeEEEEEcCC-cceeeEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 947 HETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 947 ~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
.+|.|++||+++ |..+.. ...|+..+..+++.|-=..++|++..
T Consensus 317 tdG~V~vwdlk~~gn~~sv-~~~~sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 317 TDGSVRVWDLKDLGNEVSV-TGNYSDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred CCccEEEEecCCCCCcccc-cccccccccceecCcccceeeeccCc
Confidence 899999999998 665555 45678899999999987778877654
No 169
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.81 E-value=3.8e-17 Score=169.71 Aligned_cols=499 Identities=15% Similarity=0.104 Sum_probs=299.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe------ecCCCcEEEEEEeCCCcEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~d~~~l~l~s~~~d~~i~ 460 (1084)
|...|.|+.|+.+...+.+++++..+.-||+.+.+. ... .-....|....+ ...+..-.++.++.||.+.
T Consensus 13 ~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~-~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~ 88 (737)
T KOG1524|consen 13 NSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSV-EVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFV 88 (737)
T ss_pred cceeEEeecccccceEEEeccCceEEEeecccchhh-hhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceEE
Confidence 777888999998887776666555455555554332 111 111111111111 0111111577788899999
Q ss_pred EEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 461 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+-+ +.|+.-..+..|.+.+.+-.|++ ||.-|++++.||.|++|.- ++-...++.....+|.|++|.|+.+.++.|.
T Consensus 89 il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 89 ILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred Eec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 998 88888889999999999999954 7778999999999999973 3334444555667899999999999888875
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
.+.+.+=.+.....+-..+.|. +-|.++.|++..+.+++|++|-..+|||.. |..+..-..+.. +|+++
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSv 233 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSV 233 (737)
T ss_pred -----CCeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeee
Confidence 3346666666666666777777 899999999999999999999999999975 444444444444 69999
Q ss_pred EEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 621 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|+|+ +.+++++. +++|+=.
T Consensus 234 a~npd-~~~~v~S~-nt~R~~~---------------------------------------------------------- 253 (737)
T KOG1524|consen 234 AFNPE-KDYLLWSY-NTARFSS---------------------------------------------------------- 253 (737)
T ss_pred eeccc-cceeeeee-eeeeecC----------------------------------------------------------
Confidence 99999 66776655 2333100
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
...+.|..++||+||..+..+...|.+.+--.-.
T Consensus 254 -----------------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ie----------------------- 287 (737)
T KOG1524|consen 254 -----------------------PRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIE----------------------- 287 (737)
T ss_pred -----------------------CCccceEEEEEcCCCceeeccccCceEEEeeeeh-----------------------
Confidence 1345788899999999998888888775411000
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 860 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i 860 (1084)
...+ +.+. .........|.+-|+.++.+ ..+ ..+..+...+++- + +|+++. ...|
T Consensus 288 -------------q~l~-----~~n~-~~t~~~r~~I~vrdV~~~v~-d~L-E~p~rv~k~sL~Y--~-hLvvaT-s~qv 342 (737)
T KOG1524|consen 288 -------------QQLV-----SGNL-KATSKSRKSITVRDVATGVQ-DIL-EFPQRVVKFSLGY--G-HLVVAT-SLQV 342 (737)
T ss_pred -------------hhhh-----hccc-eeEeeccceEEeehhhhhHH-HHh-hCccceeeeeece--e-EEEEEe-ccEE
Confidence 0000 0000 11222245577777766544 222 2445666666654 3 333333 3468
Q ss_pred EEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 861 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
++|.-......-.+.+....+.-+.-+. ..+++ ....+|.+|..+...... ..+.|... .....-..|-..
T Consensus 343 yiys~knwntpiiidgre~tr~lieq~e-k~fli--~dgsSi~lytyegR~~~n----p~~Pg~~~--dlL~~rtlsLan 413 (737)
T KOG1524|consen 343 YIYSEKNWNTPIIIDGREDTRNLIEQGE-KYFLI--LDGSSIWLYTYEGRLHLN----PRYPGSQI--DLLTWRTLSLAN 413 (737)
T ss_pred EEEecCCccCcEEEeccccchhHhhhhh-hheEE--ecCcEEEEEEecCceecC----CCCCCccc--ccccceeeeccc
Confidence 8887665544444444444332222211 12222 233446666655422111 01111110 011111233333
Q ss_pred CEEEE--EeC-CeEEEEEc-CCcceeeEee-cCCCCCEEEEEEc----cCCCEEEEEeCCCcEEEEEcCCCceeEEeccc
Q 001403 941 TRFLL--VHE-THLAIYEA-EELTCLKQWF-PISSVPISQATFS----CDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011 (1084)
Q Consensus 941 ~~la~--~~d-~~i~vwd~-~~~~~~~~~~-~~h~~~v~~l~fs----~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1011 (1084)
..|+. ..| .-+.++|. .+|+....-. ..|...|..++.. ++++.++.-..++.+.|=.++...-..++...
T Consensus 414 dtLaird~ad~kvlhlFd~istgk~qgDgk~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki 493 (737)
T KOG1524|consen 414 DTLAIRDNADPKVLHLFDLISTGKRQGDGKSLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI 493 (737)
T ss_pred ceEEeecCCCCeeEEeccCCCCCcccCCccccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCchhhhhhh
Confidence 44555 233 35888998 7776653311 2345555555543 45667777777777777665543222222211
Q ss_pred cccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1012 AYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1012 ~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
... ...++|. |-..+++|-.|++..||=.+...
T Consensus 494 GTm----------VhtLawn--dttNiLcglqDt~fsVWy~pn~v 526 (737)
T KOG1524|consen 494 GTM----------VHTLAWN--DTTNILCGLQDTCFSVWYYPNEV 526 (737)
T ss_pred hhh----------hhhhhhc--cccceeeeeccceEEEEEcCCcc
Confidence 111 2346777 57889999999999999886644
No 170
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.81 E-value=1.1e-17 Score=168.65 Aligned_cols=302 Identities=13% Similarity=0.160 Sum_probs=216.0
Q ss_pred cceEEEEEEecCCC-eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..++..+.|.+++. .+++++.|..|++|.+........+ ........+. .|...|+++.|+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p 75 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP 75 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence 35788889988877 8999999999999998754321110 0101112222 3999999999999
Q ss_pred CCCEEEEEeC-CeEEEEEcC--------C--------ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 805 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 805 dg~~l~~~sd-g~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
+|..||+|+| |.+.+|-.. + ......+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus 76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~ 154 (434)
T KOG1009|consen 76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA 154 (434)
T ss_pred CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence 9999999995 889999765 2 344566788999999999999 999999999999999999999
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee---eeecCCCCc------------cCCCCce
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR---SLQTPDGVM------------TLAPSET 932 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~---~~~~~~~~~------------~~~~~v~ 932 (1084)
|+.+..+.+|...|..++|.|-++++++-+.|...+++.+......... .+....++. ....-..
T Consensus 155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr 234 (434)
T KOG1009|consen 155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR 234 (434)
T ss_pred ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence 9999999999999999999999999999999987777776653321110 011110100 0012346
Q ss_pred EEEEccCCCEEEEE-----eCC-----eEEEEEcCCcceeeEeecCCCCCEEEEEEcc--------C----------CCE
Q 001403 933 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC--------D----------CRM 984 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-----~d~-----~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------d----------g~~ 984 (1084)
.++|+|||.+|++. ..+ +.++++-...+.....+++-..+...+.|+| + +-.
T Consensus 235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv 314 (434)
T KOG1009|consen 235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV 314 (434)
T ss_pred hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence 78999999999982 222 3566665543333333444456666777765 1 122
Q ss_pred EEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 985 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++.+ .-..|.|||.++...++......|.+ + ..++|++ ||..|+..+.||.+.+-.+...+
T Consensus 315 faiA-t~~svyvydtq~~~P~~~v~nihy~~-------i--TDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 315 FAIA-TKNSVYVYDTQTLEPLAVVDNIHYSA-------I--TDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred EEEe-ecceEEEeccccccceEEEeeeeeee-------e--cceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 4444 45689999999988877666333322 2 3789998 69999999999988877765544
No 171
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.80 E-value=8.3e-18 Score=164.17 Aligned_cols=278 Identities=15% Similarity=0.219 Sum_probs=206.1
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCc-------cccc-ee--eeecCCCCCeEEEEEc-------CCCC
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLF-KT--ALVRDPGVSVNRVVWS-------PDGS 401 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~-~~--~~~~~h~~~V~~v~fs-------pdg~ 401 (1084)
.+.|||||..|.+-+.| ..+.+|++... .... .. .+--.....|...+|- |+..
T Consensus 54 gckWSPDGSciL~~sed---------n~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 54 GCKWSPDGSCILSLSED---------NCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred cceeCCCCceEEeeccc---------CeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 46799999999998777 88999998421 1111 00 0000123456677774 6888
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccc---cEeEEEeecCCCcEEEEEEeCCCcEEEEEC-CCCcee--eEe--
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG---NVNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF-- 473 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~-~~g~~~--~~~-- 473 (1084)
++|+.+.+.-|++||.-+|+...... .-.|.. .-.+++|+|||. .|++| ....|+++|+ +.|+.- +..
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfaG-ykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFAG-YKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEeec-ccceEEEeeccCCCCCCcchhhhh
Confidence 99999999999999999998654322 223444 346899999999 56655 4789999998 555432 222
Q ss_pred ---ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 474 ---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 474 ---~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.+..+.+.+++|+|. +...++.++.-.++-||.-....+...+-++.+.|+-+.|.+||+.|++++.- +..|.
T Consensus 201 ~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKIL 276 (406)
T ss_pred cccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeEE
Confidence 233677888899876 44689999999999999999999999999999999999999999999998753 55699
Q ss_pred EecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 551 EWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 551 ~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
.||++. +.++..+..|......-.-....|++++|++|+.||.|++||+++ |.....+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 555666666652112223345578899999999999999999998 776666665544 4889999998778
Q ss_pred EEEEECC
Q 001403 629 LAVIANE 635 (1084)
Q Consensus 629 l~~~~~d 635 (1084)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877654
No 172
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.79 E-value=2.3e-17 Score=161.31 Aligned_cols=338 Identities=12% Similarity=0.153 Sum_probs=230.7
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~ 604 (1084)
-.+|||+|+++|+++ +..+.+-|..+-+..+.+... +.|..+.|..|.-++++ ...++.|.+|++...+.
T Consensus 13 ~c~fSp~g~yiAs~~-----~yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew 83 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLS-----RYRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW 83 (447)
T ss_pred ceeECCCCCeeeeee-----eeEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeeccee
Confidence 357999999999997 446888898887776666654 37888999999888877 56788999999998888
Q ss_pred EEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 605 LTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 605 ~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
...++... ..+..++|||||+.+...+ .+-.|.+|.+.+.+......
T Consensus 84 ~ckIdeg~--agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~------------------------------ 131 (447)
T KOG4497|consen 84 YCKIDEGQ--AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH------------------------------ 131 (447)
T ss_pred EEEeccCC--CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc------------------------------
Confidence 87777543 3588999999997665554 48889999988764332110
Q ss_pred CCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcC
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 763 (1084)
....+..++|+|||++.+..+.....-.+++.
T Consensus 132 -----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~------- 163 (447)
T KOG4497|consen 132 -----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS------- 163 (447)
T ss_pred -----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH-------
Confidence 11234567888888876665543111111100
Q ss_pred cccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEE
Q 001403 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATS 840 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~ 840 (1084)
..+-|.+-. .+.+ ..-..+.+.|+|||..||+-. +-.|..|.. .-.+..
T Consensus 164 -------~c~~W~ll~-----~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~ 215 (447)
T KOG4497|consen 164 -------SCKAWILLK-----EFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKF 215 (447)
T ss_pred -------hhHHHHHHH-----hcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeE
Confidence 011122111 1111 344567789999999888765 233333332 235778
Q ss_pred EEEcCCCCcEEEEEeCCCeEEEEEcCCcee--------------------------------------------------
Q 001403 841 LAFNPHDNNVIAIGMDDSTILIYNARSSEV-------------------------------------------------- 870 (1084)
Q Consensus 841 l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-------------------------------------------------- 870 (1084)
++|+| .+++|++|+.|+.+||.+--+.+.
T Consensus 216 v~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~ 294 (447)
T KOG4497|consen 216 VEWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESET 294 (447)
T ss_pred EEecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchh
Confidence 89999 899999999999988865433221
Q ss_pred ----------eeeec------ccccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeeeeecCCCCccCCCCce
Q 001403 871 ----------ISKLE------GHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 871 ----------~~~l~------~h~~~V~~l~~spd~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
+..++ .....+..++||+|..+++|-... +.+-+||+..-+ +...+.... .|.
T Consensus 295 ~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pir 365 (447)
T KOG4497|consen 295 IYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIR 365 (447)
T ss_pred hhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----cee
Confidence 01111 112346779999999999986443 568999999733 222222222 589
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
...|.|....|++. ....+++|......++..... .-.|..+.|.-+|..++..+.|.
T Consensus 366 af~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~--GF~i~~l~W~~~g~~i~l~~kDa 424 (447)
T KOG4497|consen 366 AFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKK--GFNIQKLQWLQPGEFIVLCGKDA 424 (447)
T ss_pred EEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCC--CceeeeEEecCCCcEEEEEcCCc
Confidence 99999999888884 566799999987666665444 47899999999999999998885
No 173
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.79 E-value=3.4e-18 Score=174.39 Aligned_cols=242 Identities=13% Similarity=0.199 Sum_probs=183.8
Q ss_pred CCceeeeecccccCccccccceEEEEEcCCccccceee------------------eecCCCCCeEEEEEcCC-CCEEEE
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA------------------LVRDPGVSVNRVVWSPD-GSLLGV 405 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~------------------~~~~h~~~V~~v~fspd-g~~las 405 (1084)
-|+|+|.|..| ..|.|||+.-....+... ...+|+..|.+++|+.+ ...||+
T Consensus 191 ~gNyvAiGtmd---------p~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaS 261 (463)
T KOG0270|consen 191 AGNYVAIGTMD---------PEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLAS 261 (463)
T ss_pred CcceEEEeccC---------ceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEe
Confidence 46899999888 899999985222211111 23479999999999974 568899
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|+.|.+|++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|-.++|
T Consensus 262 gsaD~TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w 337 (463)
T KOG0270|consen 262 GSADKTVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAW 337 (463)
T ss_pred cCCCceEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEe
Confidence 9999999999999998766 67789999999999998776 8999999999999999854333222235677889999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEE-EEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRL-FSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l-~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.+... ..++++..||+|+-+|++.. ++...+..|..+|.++++++....+ ++++. +..|.+|++..-.....
T Consensus 338 ~~~se-~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~----d~~Vklw~~~~~~~~~v- 411 (463)
T KOG0270|consen 338 DPHSE-NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAST----DKVVKLWKFDVDSPKSV- 411 (463)
T ss_pred cCCCc-eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccc----cceEEEEeecCCCCccc-
Confidence 77643 57788899999999999987 6788999999999999999877654 44443 77899999875433211
Q ss_pred eccccccCceEEEEEcCCCCE-EEEEECCCcEEEEECCCCeEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
..|...-+...|.++.|+-.. ++.|+..+.++|||+.+...+
T Consensus 412 ~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 412 KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 122211244677778887655 455788888999999876543
No 174
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.78 E-value=1.8e-16 Score=164.86 Aligned_cols=491 Identities=13% Similarity=0.177 Sum_probs=290.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEE--Ec------CCCCEE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV--WS------PDGSLL 403 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~--fs------pdg~~l 403 (1084)
-|+.-|.|+.|+.+...+.++..+ ..+.-||+.+.+..... . ....|.... ++ .....+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh---------~~~~~~~~~~~s~~~~~-~---p~df~pt~~h~~~rs~~~g~~~d~~ 78 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDH---------QIFKWSDVSRDSVEVAK-L---PDDFVPTDMHLGGRSSGGGKGSDTL 78 (737)
T ss_pred ccceeEEeecccccceEEEeccCc---------eEEEeecccchhhhhhh-C---CcccCCccccccccccCCCCCcceE
Confidence 466677899999988877775433 44455555543322111 0 111111111 11 123578
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
+.++.||.+.|-+-... .......|.+.|.+-.|+|||. -|+++++||.|++|. ++|....++.....+|+|+
T Consensus 79 ~i~s~DGkf~il~k~~r----VE~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~ 151 (737)
T KOG1524|consen 79 LICSNDGRFVILNKSAR----VERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA 151 (737)
T ss_pred EEEcCCceEEEecccch----hhhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence 88999999888875432 2225779999999999999999 799999999999999 8888777777788899999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
+|.|+.+ +.+++.+ +.+.+=.+...........|.+-|.++.|++..+.+++++. +....+||.. |..+..-
T Consensus 152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S 223 (737)
T KOG1524|consen 152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS 223 (737)
T ss_pred EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence 9977654 3455443 45555566666778888999999999999999999999986 7779999965 5555555
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..|. .+|++++|+|+ +.++.++. .+++ +.. .....|..++||+||..+++|+..|.+.+-..
T Consensus 224 ~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ 285 (737)
T KOG1524|consen 224 AAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSS-PRVGSIFNLSWSADGTQATCGTSTGQLIVAYA 285 (737)
T ss_pred Chhc---cceeeeeeccc-cceeeeee-eeee------------ecC-CCccceEEEEEcCCCceeeccccCceEEEeee
Confidence 5566 89999999999 56666554 2333 211 12345889999999999999999888765443
Q ss_pred CCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCc
Q 001403 644 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK 723 (1084)
Q Consensus 644 ~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~ 723 (1084)
-..+... +..-++......+.+-|+.. ..+..+.+|
T Consensus 286 ieq~l~~---------------------------------------~n~~~t~~~r~~I~vrdV~~---~v~d~LE~p-- 321 (737)
T KOG1524|consen 286 IEQQLVS---------------------------------------GNLKATSKSRKSITVRDVAT---GVQDILEFP-- 321 (737)
T ss_pred ehhhhhh---------------------------------------ccceeEeeccceEEeehhhh---hHHHHhhCc--
Confidence 3221110 01111111112222222221 111112111
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
..+..... .-.+|+++.+. .+++|.-..- .++.+.|..... +.-+.-
T Consensus 322 ---~rv~k~sL--~Y~hLvvaTs~-qvyiys~knw-----------ntpiiidgre~t---------------r~lieq- 368 (737)
T KOG1524|consen 322 ---QRVVKFSL--GYGHLVVATSL-QVYIYSEKNW-----------NTPIIIDGREDT---------------RNLIEQ- 368 (737)
T ss_pred ---cceeeeee--ceeEEEEEecc-EEEEEecCCc-----------cCcEEEeccccc---------------hhHhhh-
Confidence 23333332 22334444432 3444431110 011111211111 100000
Q ss_pred CCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC-----eEEEEEcCCCCcEEEEE--eCCCeEEEEEc-CCceeee--e
Q 001403 804 KNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIG--MDDSTILIYNA-RSSEVIS--K 873 (1084)
Q Consensus 804 ~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~la~g--~~dg~i~iwd~-~~~~~~~--~ 873 (1084)
..+++......++.+|..+. +.......+... -..+...- ..|+.- .+...+.+||. .+|+... .
T Consensus 369 -~ek~fli~dgsSi~lytyeg-R~~~np~~Pg~~~dlL~~rtlsLan---dtLaird~ad~kvlhlFd~istgk~qgDgk 443 (737)
T KOG1524|consen 369 -GEKYFLILDGSSIWLYTYEG-RLHLNPRYPGSQIDLLTWRTLSLAN---DTLAIRDNADPKVLHLFDLISTGKRQGDGK 443 (737)
T ss_pred -hhhheEEecCcEEEEEEecC-ceecCCCCCCcccccccceeeeccc---ceEEeecCCCCeeEEeccCCCCCcccCCcc
Confidence 11233333345566766542 222222211111 12233322 244443 23447888998 7776552 2
Q ss_pred ecccccCEEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 874 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 874 l~~h~~~V~~l~~s----pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
+-.|...|..++.. ++.+.++.-...+.+.|=.+++-... +........|..++|+...+.|.--.|+
T Consensus 444 ~L~hk~~IveIAldqkG~tnDrkVAFiDknrdl~ItsvKrfgke--------e~I~KiGTmVhtLawndttNiLcglqDt 515 (737)
T KOG1524|consen 444 SLRHKQQIVEIALDQKGLTNDRKVAFIDKNRDLFITSVKRFGKE--------EEIYKIGTMVHTLAWNDTTNILCGLQDT 515 (737)
T ss_pred ccchhhhHHHhHhhccCCCccceEEEEecCCcEEEEeehhcCch--------hhhhhhhhhhhhhhhccccceeeeeccc
Confidence 22366777766665 45678888888888888777652211 1111112358899999988888777999
Q ss_pred eEEEEEcCC
Q 001403 950 HLAIYEAEE 958 (1084)
Q Consensus 950 ~i~vwd~~~ 958 (1084)
.+.||-..+
T Consensus 516 ~fsVWy~pn 524 (737)
T KOG1524|consen 516 CFSVWYYPN 524 (737)
T ss_pred eEEEEEcCC
Confidence 999998764
No 175
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.78 E-value=5.1e-18 Score=169.13 Aligned_cols=175 Identities=21% Similarity=0.375 Sum_probs=149.0
Q ss_pred ccceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-C
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G 400 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g 400 (1084)
....+.++.+|.++=.+++|||-. ..|+ +|+|. +.|++|...++........+.+|+..|-.++|||. .
T Consensus 200 ~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll-------sGDc~--~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~ 270 (440)
T KOG0302|consen 200 EFRPLFTFNGHKGEGYGLDWSPIKTGRLL-------SGDCV--KGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTED 270 (440)
T ss_pred ccCceEEecccCccceeeecccccccccc-------cCccc--cceEeeeeccCceeecCccccccccchhhhccCCccC
Confidence 356778899999999999999922 1233 46766 89999999998877777778889999999999994 5
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC---CCceeeEeccCC
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHG 477 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~---~g~~~~~~~~h~ 477 (1084)
..||+|+.||+|+|||+..+..-..+ ..+.|.+.|+.+.|+.+-. +|++|+.||+++|||++ .++++.+|+.|.
T Consensus 271 ~vfaScS~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~--lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk 347 (440)
T KOG0302|consen 271 GVFASCSCDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREP--LLASGGDDGTLSIWDLRQFKSGQPVATFKYHK 347 (440)
T ss_pred ceEEeeecCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcc--eeeecCCCceEEEEEhhhccCCCcceeEEecc
Confidence 68999999999999999988543333 3479999999999998887 89999999999999987 467889999999
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+|+++.|+|..+ ..|++++.|..|.+||+..
T Consensus 348 ~pItsieW~p~e~-s~iaasg~D~QitiWDlsv 379 (440)
T KOG0302|consen 348 APITSIEWHPHED-SVIAASGEDNQITIWDLSV 379 (440)
T ss_pred CCeeEEEeccccC-ceEEeccCCCcEEEEEeec
Confidence 9999999998765 5888899999999999864
No 176
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.76 E-value=7e-17 Score=161.97 Aligned_cols=237 Identities=14% Similarity=0.210 Sum_probs=181.1
Q ss_pred CCCEEEEE---eCCCEEEEEEc-cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-------
Q 001403 399 DGSLLGVA---YSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------- 467 (1084)
Q Consensus 399 dg~~las~---~~dg~v~iwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g------- 467 (1084)
+.++||.. +..|...+--+ ++|+.-...-.+.||.++|..++|+|-+.+ .++|||+|.+|.||.+..+
T Consensus 43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~vW~IPe~~l~~~lt 121 (472)
T KOG0303|consen 43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVMVWQIPENGLTRDLT 121 (472)
T ss_pred CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEEEEECCCcccccCcc
Confidence 45566654 22223333222 345444444467799999999999998877 8999999999999998754
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
+.+..+.+|...|..++|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||.++++.+. +.
T Consensus 122 epvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~Ttck----DK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCK----DK 195 (472)
T ss_pred cceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecc----cc
Confidence 34677899999999999999865 689999999999999999999988887 8889999999999999999987 55
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE---EEEEcCCCCCCCcceE
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL---LTTIDAGGGLPENPRI 620 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~---~~~~~~~~~~~~v~~v 620 (1084)
.|++||.++++.+..-.+|. +..-..+.|-.++. +++.+ .+..+-+||..+-+. ...+... ..|.--
T Consensus 196 kvRv~dpr~~~~v~e~~~he--G~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS---nGvl~P 269 (472)
T KOG0303|consen 196 KVRVIDPRRGTVVSEGVAHE--GAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQELDTS---NGVLLP 269 (472)
T ss_pred eeEEEcCCCCcEeeeccccc--CCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEeccC---CceEEe
Confidence 69999999999998887777 34455566778888 55543 678899998765332 3333322 235556
Q ss_pred EEecCCCEEEEEE-CCCeEEEEEcCCCCe
Q 001403 621 CFNKNGTLLAVIA-NENRIKILETPESNS 648 (1084)
Q Consensus 621 ~~s~~~~~l~~~~-~dg~i~iwd~~~~~~ 648 (1084)
-|.+|.+.+..++ .|+.||-|.+....+
T Consensus 270 FyD~dt~ivYl~GKGD~~IRYyEit~d~P 298 (472)
T KOG0303|consen 270 FYDPDTSIVYLCGKGDSSIRYFEITNEPP 298 (472)
T ss_pred eecCCCCEEEEEecCCcceEEEEecCCCc
Confidence 6788888776554 599999999987653
No 177
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.4e-16 Score=144.57 Aligned_cols=288 Identities=13% Similarity=0.140 Sum_probs=198.3
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
.|.+-+++|.+++++++..+|.|.+..+..-.... . -..|+ ... .+..+|..++..++|. ..
T Consensus 12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk-~~i--v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGK-LKI--VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCC-cce--eeccccCCCeeeeeee--hh
Confidence 35556889999999999999999999876422100 0 00111 111 1123599999999997 56
Q ss_pred EEEEEeCCeEEEEEcCCcee------EEEEc-------CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 808 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
+|.+++||.|+-|....... +.... ..-..|+++-..|..+.++. ++.|+.++-||+++|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 88888899999987643221 11111 12357899999995454544 558999999999999999999
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC--CCceEEEEccCCCEEEEEeCCeEE
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA--PSETHIQFHKDQTRFLLVHETHLA 952 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~dg~~la~~~d~~i~ 952 (1084)
+||++.|.+++--.....+.||++||++++||.++++.... +.......-.. ..-.-.+..-+..++++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCceeEEEeccCceEEecCCCcee
Confidence 99999999999855567788999999999999999775432 22211111100 011224556678899999999999
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+|.+++.++...+.. ..++..+.|-.| .+++++..+.|.-|.+. |.+...+. .+ ....++.+...+|
T Consensus 231 lwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip------~~--s~~c~s~s~~~~p 297 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIP------VE--STACYSASWQTSP 297 (325)
T ss_pred EEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEecc------CC--ccceeeecccCCc
Confidence 999999988877543 678888888765 67778888899999886 44443333 11 1123444444555
Q ss_pred CCCCEEEEEeCCCcEEEEc
Q 001403 1033 LKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~v~vw~ 1051 (1084)
-..|-.++..+.++|+.
T Consensus 298 --~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 298 --IKFISIAGFSNKLHILK 314 (325)
T ss_pred --eEEEEecccceeeeeee
Confidence 45666777777887764
No 178
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=4.6e-18 Score=175.09 Aligned_cols=302 Identities=16% Similarity=0.215 Sum_probs=237.2
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSL 402 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~ 402 (1084)
.+...|..|.+.|..|-|...|..|++|+.| ..|.+||+......... ..||...|....|-| +.+.
T Consensus 133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD---------~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~t 201 (559)
T KOG1334|consen 133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDD---------LQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRT 201 (559)
T ss_pred hhhhcccCCCCccceeeecccCceeeccCcc---------ceEEeehhhccCccccc--ccccccchhhhhccCCCCCcC
Confidence 4556789999999999999999999999988 99999999987776554 678999999999988 5678
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---ccCCC-
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHGA- 478 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~---~~h~~- 478 (1084)
+++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.+++.|+.+.-.|++++.....+ ..+..
T Consensus 202 i~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~ 280 (559)
T KOG1334|consen 202 IVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKE 280 (559)
T ss_pred ceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCCcc
Confidence 999999999998877644444434467789999999999999887 7999999999999999887654333 22333
Q ss_pred --cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce------Eee------cCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 479 --PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 479 --~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
...+++..|.. ...+++++.|..+++||.+..... ..+ ......|++++|+.++.-|++...
T Consensus 281 ~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn--- 356 (559)
T KOG1334|consen 281 RVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN--- 356 (559)
T ss_pred ceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec---
Confidence 45777777654 358999999999999998653322 111 123347999999988777776665
Q ss_pred CCeeEEEecCCC--c----------eEe-eeeeccccccCceEEEEE-cCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 545 GESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 545 ~~~~i~~wd~~~--~----------~~~-~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+-.|+++.... | ..+ +.+++|... ..|..+-| .|...++++|+.-|.|.||+-.+++.++.+.+
T Consensus 357 -De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Meg 434 (559)
T KOG1334|consen 357 -DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEG 434 (559)
T ss_pred -ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchhHHHHHhhc
Confidence 44488885432 2 222 338888733 34777754 68889999999999999999999999999987
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..+ .|+|+.-+|--..||+.+-|..|+||...+.
T Consensus 435 Dr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~ 468 (559)
T KOG1334|consen 435 DRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA 468 (559)
T ss_pred ccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence 766 5899999999999999999999999987544
No 179
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=1.9e-15 Score=163.97 Aligned_cols=603 Identities=12% Similarity=0.114 Sum_probs=352.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC------C------CEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------G------SLL 403 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd------g------~~l 403 (1084)
.-.++.|+|.| ++|.|+. ..|.|-|..+-.... .+.-|...|+.|.|.|- + -+|
T Consensus 17 N~~A~Dw~~~G-LiAygsh----------slV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lli 82 (1062)
T KOG1912|consen 17 NRNAADWSPSG-LIAYGSH----------SLVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLI 82 (1062)
T ss_pred cccccccCccc-eEEEecC----------ceEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeE
Confidence 57788999987 5666531 566777765543332 25568999999999872 1 267
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec---CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
|++...|.|.+||...+..+. .+..|..+|..++|-+ +.+. +|+.-....++.+|+..+|+...+........
T Consensus 83 AsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iL 158 (1062)
T KOG1912|consen 83 ASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKFWKYDYSHEIL 158 (1062)
T ss_pred EeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCceeeccccCCcce
Confidence 888889999999999886555 6778899999999965 3434 45555557899999999999988877666777
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCC------ceEeecCC-CC-------------------------eEEEEE
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYDAP-GL-------------------------GCTRMA 528 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~------~~~~~~~~-~~-------------------------~i~~~~ 528 (1084)
.++.+.|-.. ..+..-+..|.+.+-+.-... ....+... .. -...++
T Consensus 159 s~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~fa 237 (1062)
T KOG1912|consen 159 SCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFA 237 (1062)
T ss_pred eeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhh
Confidence 7788876644 344444555666555442111 11111111 00 012356
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC--CEEEEEECCCcEEEEECCC-----
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK--DQILAAGDDHVIKIWDMNK----- 601 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~dg~i~iwd~~~----- 601 (1084)
|+|.-+.++.... ...+.++|++-..++....-.. +.+.-+.+-|++ ..+++.-.||.+.+|-.+.
T Consensus 238 f~p~~rn~lfi~~----prellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f 310 (1062)
T KOG1912|consen 238 FSPHWRNILFITF----PRELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEF 310 (1062)
T ss_pred cChhhhceEEEEe----ccceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccc
Confidence 7886655554444 3339999999888888877666 666667776664 5788999999999997654
Q ss_pred -----------CeEEEEEcCCCCCCCcceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeeec-----------------
Q 001403 602 -----------VQLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAA----------------- 652 (1084)
Q Consensus 602 -----------~~~~~~~~~~~~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~----------------- 652 (1084)
++....+..-.... ....+..|. ...+++...+|...+|.+.+++.-...
T Consensus 311 ~~~~~~l~~dl~~Q~~~vr~m~~~r-p~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~ 389 (1062)
T KOG1912|consen 311 KKPNASLSMDLGEQVHVVRPMEEFR-PVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLST 389 (1062)
T ss_pred cccchhhccccccceEEEeechhcc-cceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCce
Confidence 22222221111111 112222332 445555566788888888765321111
Q ss_pred --------------cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 653 --------------GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 653 --------------~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
.+|.....+....|-+...-.....+ ......--.+++.|...|+|.++|+.++.......
T Consensus 390 ~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p~----~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs- 464 (1062)
T KOG1912|consen 390 KLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDPG----GNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS- 464 (1062)
T ss_pred eehhhccccchhhcCCCCCCceeeecccCcccceeecCCC----CCccceeeeeEEeecCCceEEEEEecchhhhhhhc-
Confidence 12222333333332222111100000 00001112457889999999999987654443333
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecC--CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASN--GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~d--g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
.|...|.++.|......+-.+.+. ..-.. -...+.+-|+.+|.......+++ ..+.+
T Consensus 465 -----vht~~VkgleW~g~sslvSfsys~~n~~sg~---------------vrN~l~vtdLrtGlsk~fR~l~~-~desp 523 (1062)
T KOG1912|consen 465 -----VHTSLVKGLEWLGNSSLVSFSYSHVNSASGG---------------VRNDLVVTDLRTGLSKRFRGLQK-PDESP 523 (1062)
T ss_pred -----ccccceeeeeeccceeEEEeeeccccccccc---------------eeeeEEEEEcccccccccccCCC-CCcCc
Confidence 388999999998777644333221 00000 01245666777777554443433 46889
Q ss_pred ccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEc-CC---------------CCcEEEEEeCCCe
Q 001403 797 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNNVIAIGMDDST 859 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~~la~g~~dg~ 859 (1084)
|+.+..|..|+|++..- +.-+.+||+.+..+++.....-.-|+.++|+ |. ..+.++..+ +.
T Consensus 524 I~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds--~e 601 (1062)
T KOG1912|consen 524 IRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDS--VE 601 (1062)
T ss_pred ceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhceeeecc--cc
Confidence 99999999999999997 6789999998877666554444558888888 31 012233233 22
Q ss_pred EEEEEcCC-------cee-eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCc
Q 001403 860 ILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE 931 (1084)
Q Consensus 860 i~iwd~~~-------~~~-~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v 931 (1084)
.+++.+.- +.. ....+...-.+..++| .+..|+.|..+|.+.+||+....... ......+.. ..
T Consensus 602 s~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~d~lv~GD~~GNl~~WDlg~R~SRg---~~d~p~~ra---~~ 673 (1062)
T KOG1912|consen 602 SRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KDDILVVGDVEGNLVVWDLGRRQSRG---VRDSPDPRA---HS 673 (1062)
T ss_pred chheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cCCeeEeecccCceeEEecccccccC---ccCCCCchh---hh
Confidence 33333221 111 0111111122334566 46789999999999999987632111 111111111 22
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001403 932 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~--~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
....+-|....+++-...-+-+||.+....+..+ .+.+. .+..+.+......++ ..|.++|+-.......
T Consensus 674 l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~ 745 (1062)
T KOG1912|consen 674 LTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSP 745 (1062)
T ss_pred eecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEeccccCC
Confidence 2333344433444445566889999887777665 34333 444445544444333 3455777766655443
No 180
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=3.3e-18 Score=186.50 Aligned_cols=285 Identities=20% Similarity=0.292 Sum_probs=219.7
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA 406 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~ 406 (1084)
++.|.||.+.|.|+.|-..|+|+++|+.| ..++||..++...... ..||.+.|+.++.+.+..++|++
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd---------~lvKiwS~et~~~lAs---~rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDD---------RLVKIWSMETARCLAS---CRGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCcc---------ceeeeeeccchhhhcc---CCCCccccchhccchhhhhhhhc
Confidence 45688999999999999999999999988 9999999888766544 78999999999999999999999
Q ss_pred eCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE---ecc-CCCcEEE
Q 001403 407 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG-HGAPVYS 482 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~---~~~-h~~~v~~ 482 (1084)
+.|..|++|.+.++..+. .+.+|++.|++++|+|- .+.+.||++++||.+=.-.++. +.. ...-+.+
T Consensus 251 S~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s 321 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDS 321 (1113)
T ss_pred ccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCcccccceee
Confidence 999999999999997766 78899999999999994 3678899999999871111111 111 1234455
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
+.| ..++..++|++.|+.-..|.+..... +...+.-+.++.|.. +.+++- .+..+.+|++.+|...+
T Consensus 322 ~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwnl~~g~l~H 389 (1113)
T KOG0644|consen 322 ILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWNLYTGQLLH 389 (1113)
T ss_pred eec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeeecccchhhh
Confidence 555 44667889999999988886542111 111112222222322 222222 15668899999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEE-EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
.+.+|. ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++...+-|.++|
T Consensus 390 ~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~lsd~hgql~i 464 (1113)
T KOG0644|consen 390 NLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALSDDHGQLYI 464 (1113)
T ss_pred hhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecCCCCCceEE
Confidence 999998 8999999999877665 5899999999999999888777633 2 24677899999999999999999999
Q ss_pred EEcCCCCee
Q 001403 641 LETPESNSV 649 (1084)
Q Consensus 641 wd~~~~~~~ 649 (1084)
.....++..
T Consensus 465 ~g~gqs~s~ 473 (1113)
T KOG0644|consen 465 LGTGQSKSQ 473 (1113)
T ss_pred eccCCCccc
Confidence 987766443
No 181
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.75 E-value=1.4e-16 Score=153.19 Aligned_cols=258 Identities=17% Similarity=0.225 Sum_probs=184.3
Q ss_pred ecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc-----ce--eeeecCCCCCeEEEEEcCCC
Q 001403 329 TLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-----FK--TALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-----~~--~~~~~~h~~~V~~v~fspdg 400 (1084)
+|..|.++|+.++-||-. +.|++...|...... .....||.+...... .+ ..+-..+-+.|.|+.|.|++
T Consensus 58 vf~h~agEvw~las~P~d~~ilaT~yn~~s~s~v--l~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns 135 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPFDQRILATVYNDTSDSGV--LTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS 135 (370)
T ss_pred hhhcCCcceehhhcCCCCCceEEEEEeccCCCcc--eeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence 457788999999999955 455554433222222 256789998643222 11 11112355699999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCcccccee---eeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCceeeEe-c
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSF-E 474 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~---~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~ 474 (1084)
..+|+-. |..|.+|+++.+..+.... .-.+|....++-+||| ||. .+++.+ |+++..||+++..+...+ .
T Consensus 136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~~~~~sI~d 211 (370)
T KOG1007|consen 136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTMKKNNSIED 211 (370)
T ss_pred CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccchhhhcchhh
Confidence 9999887 6679999999876532111 1113566788899998 555 566555 899999999998887777 5
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEe
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~w 552 (1084)
.|...|..+.|+|+.. .+|++++.||.|++||.+..+ +...+..|.+++.++.|+|.-.. +++++. +..|.+|
T Consensus 212 AHgq~vrdlDfNpnkq-~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S----Ds~V~Ls 286 (370)
T KOG1007|consen 212 AHGQRVRDLDFNPNKQ-HILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS----DSAVNLS 286 (370)
T ss_pred hhcceeeeccCCCCce-EEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC----CceeEEE
Confidence 6889999999987643 689999999999999998755 46788999999999999996554 445543 5567777
Q ss_pred cCCCc-----------------------------eEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECC
Q 001403 553 NESEG-----------------------------AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN 600 (1084)
Q Consensus 553 d~~~~-----------------------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~ 600 (1084)
...+- ..+.++..|. +.|++++|+.-..++ ++-+.||.+.|=.+.
T Consensus 287 ca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 287 CASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred eccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 43311 1123444555 899999999877766 557899998876654
No 182
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=3.4e-15 Score=149.38 Aligned_cols=242 Identities=11% Similarity=0.146 Sum_probs=190.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...+..+.|+.|+..|..|+.|| -++|+.+.-.... ........|-.+-||..= +.+++...-+.+++.+.+.+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence 45677788999999999999999 7888877643211 222233356667777542 13444433346999999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC---CCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
..+..+. ...+|.++.++. +.|+.+-.+. |.|||++..+.+.++.. +...+.++++++.+.+++.-+...
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t- 151 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT- 151 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence 8888776 566788888832 4666665554 99999999988776544 344677777777888998765433
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
.|.|.+||..+-+.+..+..|. +.+.+++|+++|..||++++.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus 152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs 227 (391)
T KOG2110|consen 152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS 227 (391)
T ss_pred -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence 5569999999999999999888 99999999999999999999987 699999999999999877666678999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001403 624 KNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|++.+|++.++.++|.+|.+...
T Consensus 228 ~ds~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 228 PDSQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCCCeEEEecCCCeEEEEEeccc
Confidence 99999999999999999998854
No 183
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=1.6e-17 Score=174.73 Aligned_cols=260 Identities=15% Similarity=0.201 Sum_probs=195.8
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-----CCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~-----~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
+..|.+.|+.++|.|....|++++.||++.+|+++ ....+.++.++++|.++|.|++.+++++ .+++|+.||+
T Consensus 290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg~ 367 (577)
T KOG0642|consen 290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDGT 367 (577)
T ss_pred eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCce
Confidence 55689999999999999999999999999999993 3344677889999999999999999999 8999999999
Q ss_pred EEEEECCC------C----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--CeEEE
Q 001403 459 IKVWDAVT------G----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTR 526 (1084)
Q Consensus 459 i~vwd~~~------g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~~i~~ 526 (1084)
|+.|++.. . .....+.||.+.|+.++++..+ ..|++++.||+++.|+...... ..+.... .--.+
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pls 444 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLS 444 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcce
Confidence 99996541 1 2346788999999999997765 4799999999999998776555 3332222 22334
Q ss_pred EEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 527 MAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 527 ~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
+.+.... ..+++... .+.-.+.+...+..+..+..... ....+..+.++|.+...+++.+|+.|+++|..+
T Consensus 445 vd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 445 VDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred EeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 4443322 11222111 22233344444444444432221 124577888999999999999999999999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+.++.....+. ..+.++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 521 ~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 521 GKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred cccchheeecc--ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 99998887653 4689999999999999999999999999987766655443
No 184
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=9e-18 Score=191.32 Aligned_cols=249 Identities=14% Similarity=0.148 Sum_probs=196.9
Q ss_pred CceEEEEcCCCce----eeeecccccCccccccceEEEEEcCC---ccccceeeeecCCCCCeEEEEEcCCCC-EEEEEe
Q 001403 336 SPMSMDFHPVQHT----LLLGLWDVNSGQKLFIRNFKVWDIGA---CSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~----las~~~d~~sg~~~~~~~v~iwd~~~---~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~ 407 (1084)
.-..++|++.|.. ||.|..| |.|.+||... +...........|++.|..+.|++.+. +||+|+
T Consensus 66 rF~kL~W~~~g~~~~GlIaGG~ed---------G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa 136 (1049)
T KOG0307|consen 66 RFNKLAWGSYGSHSHGLIAGGLED---------GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGA 136 (1049)
T ss_pred cceeeeecccCCCccceeeccccC---------CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccC
Confidence 5668999998877 7777766 9999999865 222222223667999999999999665 999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC--cEEEEee
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVYSLCP 485 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~--~v~~~~~ 485 (1084)
.||.|.|||++.-+...... -....+.|.+++|+..-.+ +|++++.+|.+.|||++..+.+-.+..|.. .+..+.|
T Consensus 137 ~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 137 DDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred CCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCccceeeeee
Confidence 99999999998754322111 1124568999999987766 799999999999999999988887876655 4678899
Q ss_pred cccCCCcEEEEEecC-C--eEEEEECCCCC-ceEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 486 HAKENIHFIFSISVD-G--KIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~d-g--~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+... .+++++.| + .|.+||++... ...+++.|...|.++.|++.+ ++|++++. |+.|.+|+.++++.+
T Consensus 215 hP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 215 HPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWNPNTGEVL 289 (1049)
T ss_pred CCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEecCCCceEe
Confidence 987654 45555544 3 49999998654 456678999999999999977 77778775 677999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCe
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~ 603 (1084)
..+.... +.+..+.|+|... .+++++-||.|-|+.+.+..
T Consensus 290 ~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 290 GELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred eecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 9988755 8899999999877 67778999999999987654
No 185
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.8e-16 Score=156.84 Aligned_cols=294 Identities=11% Similarity=0.076 Sum_probs=211.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc---cccceeee-ecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~---~~~~~~~l-~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
+.+|.+.|.++.||.++++||+|+.|..+.+|+++..- ..+++... ..|...|.|++|....+ .+++|+.+++|
T Consensus 52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V 129 (609)
T KOG4227|consen 52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV 129 (609)
T ss_pred hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence 66799999999999999999999999999999987321 11222122 24668999999998887 89999999999
Q ss_pred EEEECCCCceeeEecc--CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCC
Q 001403 460 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
...|+++.+.+..+.. ..+.|+.+..+|. .+.+++.+.+|.|.+||.+.... .............+.|.|...
T Consensus 130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P 207 (609)
T KOG4227|consen 130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP 207 (609)
T ss_pred EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence 9999999999887753 3358999998776 36899999999999999986552 334444556788999999887
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceE-eee---eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE-EEEc
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTID 609 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~-~~~---~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~ 609 (1084)
.|+....... -+-+||.+.... +.. +.+.........++.|+|+|+.+++.-....-.+||+.+..+. ..+.
T Consensus 208 ~Li~~~~~~~---G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D 284 (609)
T KOG4227|consen 208 ALILVNSETG---GPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD 284 (609)
T ss_pred eeEEeccccC---CCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence 7766554333 388999875432 111 1222211133467889999999998776666777888774433 2232
Q ss_pred CCC----CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC-----------------------CeeeeccccccceeEE
Q 001403 610 AGG----GLPENPRICFNKNGTLLAVIANENRIKILETPES-----------------------NSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 610 ~~~----~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~~~~~~~~~~~~i~~~ 662 (1084)
... ....+.+++|-.|. .+++|+++=.|++|.+... +.+..+++|..-++.+
T Consensus 285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 111 11235677777654 4999999999999988632 2344566777777777
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
.|+ +...++++.+-.+.+++|.-
T Consensus 364 RF~----------------------~H~~~l~SSGVE~~~KlWS~ 386 (609)
T KOG4227|consen 364 RFS----------------------QHNNLLVSSGVENSFKLWSD 386 (609)
T ss_pred eec----------------------CCcceEeccchhhheecccc
Confidence 776 45666777788888999974
No 186
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.4e-16 Score=166.08 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=164.4
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
++.||++.|+|++|+.||. +|++|+.|-.+.|||.-..+.++.+ .+|...|.++.|.|..+...+++|+.|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 6889999999999999999 9999999999999999988888877 789999999999999888999999999999999
Q ss_pred ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC-CEE
Q 001403 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQI 585 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l 585 (1084)
|++..+... .+ -...+..+.+..|. ..|..++-.|++ ..+
T Consensus 123 dl~~~~~~~-------------------------~d-----------~~~~~~~~~~~cht---~rVKria~~p~~Phtf 163 (758)
T KOG1310|consen 123 DLDSSKEGG-------------------------MD-----------HGMEETTRCWSCHT---DRVKRIATAPNGPHTF 163 (758)
T ss_pred ecccccccc-------------------------cc-----------cCccchhhhhhhhh---hhhhheecCCCCCceE
Confidence 987532211 00 00111223334455 678888888888 778
Q ss_pred EEEECCCcEEEEECCCCeEEE--------EEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEcCCC-Ceeeecc--
Q 001403 586 LAAGDDHVIKIWDMNKVQLLT--------TIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAAG-- 653 (1084)
Q Consensus 586 ~~~~~dg~i~iwd~~~~~~~~--------~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~-- 653 (1084)
.++++||+|+-+|++....-. ........-...++.++| +..+|++|+.|--.++||.... +....-.
T Consensus 164 wsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~ 243 (758)
T KOG1310|consen 164 WSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTM 243 (758)
T ss_pred EEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccc
Confidence 899999999999998622110 011112222456889999 5678999999999999994311 1111000
Q ss_pred --ccccceeEEE-EcCCCceeeeeccC------ceeEecCCCCCCCCccceecccCccccccceeecCccceeeccC
Q 001403 654 --VLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 721 (1084)
Q Consensus 654 --~~~~~i~~~~-~~p~~~~~~~~~~~------~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~ 721 (1084)
.......|+. |+|.......+... ..++| +|+|.-++..-....|.++++...+..........
T Consensus 244 ~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~~~~~ 316 (758)
T KOG1310|consen 244 NTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYFLPIE 316 (758)
T ss_pred cCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeecCccc
Confidence 0011111121 22222211111011 12333 57776666666666788888876665554444433
No 187
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.74 E-value=6.6e-17 Score=153.62 Aligned_cols=307 Identities=16% Similarity=0.196 Sum_probs=199.3
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+++|. ..++++.|..++ +|++|..-|.|.+|++.+......+...+. ..|..+..-|+ ..+.+-+.|+.+.+
T Consensus 8 fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l 81 (323)
T KOG0322|consen 8 FVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL 81 (323)
T ss_pred eEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence 4455666 789999998776 599999999999999999888887775443 24667777776 56888889999999
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
|++..+..+.. |+-.++++.|++..-.. ...+....++.- ..+.-.+-..+.+.+.+.....-
T Consensus 82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~-------------~~k~~eqll~yp-~rgsde~h~~D~g~~tqv~i~dd 144 (323)
T KOG0322|consen 82 WTIAYSAFISI---HSIVVNSLGFCRFSLVK-------------KPKNSEQLLEYP-SRGSDETHKQDGGDTTQVQIADD 144 (323)
T ss_pred EEccCcceEEE---eeeeccccccccceecc-------------CCCcchhheecC-CcccchhhhhccCccceeEccCc
Confidence 99987644432 23334444454332111 000111111111 11111111111122222222222
Q ss_pred CCccccceEEEEEEec-CCC--eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 721 PSKVKANKISRLTYNN-GGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
+.....+.+.+..+.. ++. .+++|..+|.+.+||+..+..... -...|.+. .+...|..+|
T Consensus 145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~-------~~~~~kv~---------~~~ash~qpv 208 (323)
T KOG0322|consen 145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQ-------LPQSSKVE---------SPNASHKQPV 208 (323)
T ss_pred hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeec-------cccccccc---------cchhhccCcc
Confidence 2233455565555322 233 356677789999999876522110 11122221 1122488999
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEcCC--cee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.++.+.+.-..=++++ +..+..|+++. +.+ ...+.-....+..+.+-| |++++|+++.||.||||+..+..++.
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA 287 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA 287 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh
Confidence 9999986544444444 56788888763 322 222333445788899999 99999999999999999999999999
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
.++-|++.|++++|+||..++|.+|.|++|.+|++
T Consensus 288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 99999999999999999999999999999999986
No 188
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=2.6e-16 Score=157.09 Aligned_cols=298 Identities=12% Similarity=0.113 Sum_probs=212.6
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc---ceee-eecCCCCCeEEEEEcCCCC
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FKTA-LVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~~~-~~~~h~~~V~~v~fspdg~ 401 (1084)
+++-+.+|.+.|.++.||.+|++||+|..| ..++||.+...-.. .... .-..|...|.|++|....+
T Consensus 48 ~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD---------~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~ 118 (609)
T KOG4227|consen 48 CQKDVREHTGCINALQFSHNDRFLASGGDD---------MHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR 118 (609)
T ss_pred hhhhhhhhccccceeeeccCCeEEeecCCc---------ceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe
Confidence 446688999999999999999999999877 89999999642111 1111 1234668999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-e--eeEeccCCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFEGHGA 478 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~--~~~~~~h~~ 478 (1084)
++.+|..+++|...|+++.+.+... .-....+.|+.+..+|... .+++.+.++.|.+||.+... . +..+.....
T Consensus 119 ~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~ 195 (609)
T KOG4227|consen 119 FLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANSGK 195 (609)
T ss_pred eEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCCCc
Confidence 9999999999999999998765422 1112334899999999977 79999999999999987654 2 222233445
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-------eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-------~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
...++-|+|.. ..+|++.+..+-+.+||.+...... .+......-.++.|+|.|+.+.+.-. ...-.+
T Consensus 196 ~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P~~ 270 (609)
T KOG4227|consen 196 NFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCPLY 270 (609)
T ss_pred cceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCCEE
Confidence 56677787653 3688899999999999987654321 11222223467889999999887643 222456
Q ss_pred ecCCCceEe-eeeeccc----cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-----------------------e
Q 001403 552 WNESEGAIK-RTYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-----------------------Q 603 (1084)
Q Consensus 552 wd~~~~~~~-~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-----------------------~ 603 (1084)
||+-+.++. ..+. |. .....+.+++|..|- .+++|+.+-.|++|.+... .
T Consensus 271 ~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~ 348 (609)
T KOG4227|consen 271 FDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEK 348 (609)
T ss_pred eeeecccceeEecc-CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecc
Confidence 777664432 2222 11 112357778887654 5999999999999987531 1
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.+..+.+| ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus 349 ~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 349 ELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 22344444 3457899999999999999999999999754
No 189
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=1.2e-15 Score=143.15 Aligned_cols=274 Identities=16% Similarity=0.201 Sum_probs=192.3
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc-------cccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
.|.+-++||.++||++|..+ |.|.+..++.. ..........+|.++|..++|. .++|++|+.
T Consensus 12 tvf~qa~sp~~~~l~agn~~---------G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~gd 80 (325)
T KOG0649|consen 12 TVFAQAISPSKQYLFAGNLF---------GDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGGD 80 (325)
T ss_pred HHHHHhhCCcceEEEEecCC---------CeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeeccC
Confidence 67777899999999999877 99999988531 1111112247899999999999 456766654
Q ss_pred CCEEEEEEccCCcc---ccceee--eeccc-----ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 409 KHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 409 dg~v~iwd~~~~~~---~~~~~~--l~~h~-----~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
|.|+=|.+..... .+...+ ...|. -.|+++...|... -++.++.|+.+.-||+++|+..++++||++
T Consensus 81 -G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~rGHtD 157 (325)
T KOG0649|consen 81 -GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYRGHTD 157 (325)
T ss_pred -ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEcCCcc
Confidence 9999998864322 111111 11222 2588899998877 455555799999999999999999999999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC----------CeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.|.++.-.. ....+++|+.||++|+||.++.+....+.... .+|.++ .-+..++++++ ...
T Consensus 158 YvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGg-----Gp~ 228 (325)
T KOG0649|consen 158 YVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGG-----GPK 228 (325)
T ss_pred eeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecC-----CCc
Confidence 999998632 33579999999999999999988876654322 234444 45677888876 344
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC-CC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GT 627 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-~~ 627 (1084)
+.+|+++..+....+.-.. ++..+.|.. +.++++++.+.+.-|.+. |.+....+.... ...+..|+.. -+
T Consensus 229 lslwhLrsse~t~vfpipa----~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k 299 (325)
T KOG0649|consen 229 LSLWHLRSSESTCVFPIPA----RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIK 299 (325)
T ss_pred eeEEeccCCCceEEEeccc----ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceE
Confidence 9999999999888887644 778888854 578888888899999874 454444443322 2344444432 23
Q ss_pred EEEEEECCCeEEEE
Q 001403 628 LLAVIANENRIKIL 641 (1084)
Q Consensus 628 ~l~~~~~dg~i~iw 641 (1084)
++-.++..+.+.|+
T Consensus 300 ~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 300 FISIAGFSNKLHIL 313 (325)
T ss_pred EEEecccceeeeee
Confidence 44455555566554
No 190
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.73 E-value=1.2e-14 Score=160.49 Aligned_cols=202 Identities=12% Similarity=0.130 Sum_probs=128.6
Q ss_pred cEEEecCCCCEEEEEe--CCeEEEEEcCC-c---eeEEEEcCCCCCeEEEEEcCCCCcEEE-EEeCCCeEEEEEcCCcee
Q 001403 798 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-~g~~dg~i~iwd~~~~~~ 870 (1084)
..++++|+|+++++++ ++.|.+|++++ + +.+..+. +......++++| ++++++ +...++.|.+||+.+...
T Consensus 83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~ 160 (330)
T PRK11028 83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH 160 (330)
T ss_pred eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence 3566667776666665 46677777653 2 1222222 223456788999 777665 455679999999986332
Q ss_pred ee-------eecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 871 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 871 ~~-------~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
+. .... ......++|+|||++++++.. +++|.+|+++. ++......+...............+.|+|||
T Consensus 161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg 239 (330)
T PRK11028 161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG 239 (330)
T ss_pred ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence 21 1111 234678999999999988776 89999999984 3322222222211111111134468999999
Q ss_pred CEEEEE--eCCeEEEEEcCCcce----eeEeecCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcC--CCce
Q 001403 941 TRFLLV--HETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS--NLEV 1004 (1084)
Q Consensus 941 ~~la~~--~d~~i~vwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~--~~~~ 1004 (1084)
++++++ .++.|.+|++..... +..... ......+.|+|||++|+++.. +++|.+|+++ +|.+
T Consensus 240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 999996 467899999864332 222111 124457899999999998876 8999999875 4444
No 191
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.72 E-value=8.3e-15 Score=161.87 Aligned_cols=250 Identities=10% Similarity=0.086 Sum_probs=164.5
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcC-Ccee--EEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVM-TFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~-~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~ 867 (1084)
......++++|++++|++++ ++.|.+|++. +++. ..... ..+....++|+| ++++|++++ .++.|.+|++.+
T Consensus 34 ~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~-~~~~p~~i~~~~-~g~~l~v~~~~~~~v~v~~~~~ 111 (330)
T PRK11028 34 PGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESP-LPGSPTHISTDH-QGRFLFSASYNANCVSVSPLDK 111 (330)
T ss_pred CCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeec-CCCCceEEEECC-CCCEEEEEEcCCCeEEEEEECC
Confidence 34567889999999998775 5889999996 3432 22222 234567899999 788777766 488999999974
Q ss_pred -ce---eeeeecccccCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeee---eeeecCCCCccCCCCceEEEEccC
Q 001403 868 -SE---VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 868 -~~---~~~~l~~h~~~V~~l~~spd~~~l~s~-s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+. .+..+.+ .....+++++||+++++++ ..++.|.+||+.+...... .......+ .....++|+||
T Consensus 112 ~g~~~~~~~~~~~-~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g-----~~p~~~~~~pd 185 (330)
T PRK11028 112 DGIPVAPIQIIEG-LEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEG-----AGPRHMVFHPN 185 (330)
T ss_pred CCCCCCceeeccC-CCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCC-----CCCceEEECCC
Confidence 32 2333332 2346778999999988655 4569999999986321110 11111112 24678999999
Q ss_pred CCEEEEE--eCCeEEEEEcCC--cc--eeeEeec--C---CCCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCCCceeEE
Q 001403 940 QTRFLLV--HETHLAIYEAEE--LT--CLKQWFP--I---SSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 940 g~~la~~--~d~~i~vwd~~~--~~--~~~~~~~--~---h~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~~~~~~~~ 1007 (1084)
|++++++ .+++|.+|++.. ++ .+..+.. . +......+.|+|||++|+++.. ++.|.+|++.+......
T Consensus 186 g~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~ 265 (330)
T PRK11028 186 QQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLS 265 (330)
T ss_pred CCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEE
Confidence 9999885 378999999973 32 2222211 1 1223346899999999998854 68999999965432111
Q ss_pred eccccccCCCCcccceeeeEEEECCCCCCEEEEEeC-CCcEEEEcCCCCCCCc
Q 001403 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 1008 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~-dg~v~vw~~~~~~~~~ 1059 (1084)
+... .+.+ ..+..++++| ||.+|+++.. +++|.+|++..+...+
T Consensus 266 ~~~~--~~~~-----~~p~~~~~~~-dg~~l~va~~~~~~v~v~~~~~~~g~l 310 (330)
T PRK11028 266 FEGH--QPTE-----TQPRGFNIDH-SGKYLIAAGQKSHHISVYEIDGETGLL 310 (330)
T ss_pred EeEE--Eecc-----ccCCceEECC-CCCEEEEEEccCCcEEEEEEcCCCCcE
Confidence 1111 1111 2344578999 5888887765 8999999987655444
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=1.3e-16 Score=157.53 Aligned_cols=292 Identities=12% Similarity=0.157 Sum_probs=203.1
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee--cCCC-CeEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPG-LGCT 525 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~-~~i~ 525 (1084)
.++++...|+|++||..+|+.+..++++...++.+.|......+.+.+++.||+|++||++.......+ ..+. .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 677788899999999999999999999999999999976545678999999999999999987664433 3333 4677
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeee-eccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCC
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTY-QGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~-~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~ 602 (1084)
+++....++.++++..-...+..|.+||.+..+. ++.+ ..|. +.|+++.|+|.. +.|++|+.||.|.+||+...
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d 198 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD 198 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence 7777778888888876666678899999998765 5444 3454 899999999975 67888999999999999754
Q ss_pred eE----EEEEcCCCCCCCcceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccC
Q 001403 603 QL----LTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN 677 (1084)
Q Consensus 603 ~~----~~~~~~~~~~~~v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~ 677 (1084)
.. +.++. ....|..+.|..++ +.+.+.+..++..+|+++.+.+...+....-.. ... .....
T Consensus 199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~--~d~--------r~~~~ 265 (376)
T KOG1188|consen 199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSA--DDL--------RKEDN 265 (376)
T ss_pred cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchh--hhH--------Hhhhh
Confidence 22 23332 22348889999876 458888889999999999886443332211000 000 00000
Q ss_pred ceeEecCCCCCCCCccceecc-cCccccccceeecCc-cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeec
Q 001403 678 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 678 ~~~~~~~~~s~~~~~l~~~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
....++.....++...+.++. -+...++.+....+. ..........+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus 266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 011122221233344444433 566666655432222 122233334457777888999999999999999999999985
Q ss_pred c
Q 001403 756 P 756 (1084)
Q Consensus 756 ~ 756 (1084)
+
T Consensus 346 ~ 346 (376)
T KOG1188|consen 346 E 346 (376)
T ss_pred C
Confidence 3
No 193
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.72 E-value=1.4e-17 Score=181.69 Aligned_cols=288 Identities=15% Similarity=0.236 Sum_probs=226.4
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+.+..+.+|. ..|.|+.|...|.++++|++|..++||.+.++.++....+|.+ .+..++.+.+..++++++.|..
T Consensus 181 k~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~--ditdlavs~~n~~iaaaS~D~v 255 (1113)
T KOG0644|consen 181 KNIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSG--DITDLAVSSNNTMIAAASNDKV 255 (1113)
T ss_pred HHHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCcc--ccchhccchhhhhhhhcccCce
Confidence 3445666777 8999999999999999999999999999999999999997765 6899999999999999999999
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|++|.+..+.++..+++|.+.|++++|+|. .+.+.||++++||...... ...
T Consensus 256 IrvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~~--~y~ 307 (1113)
T KOG0644|consen 256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEPR--IYV 307 (1113)
T ss_pred EEEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccccc--ccC
Confidence 999999999999999999999999999974 2567789999999762110 000
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
-.-+.......+..+.|...+..+++++.++....|.+..- .| +...+
T Consensus 308 prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l---------------~~-----------------~~~~l 355 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL---------------AW-----------------RSNLL 355 (1113)
T ss_pred CCCCCcccccceeeeeccccccccccccCCcccccchhhHh---------------hh-----------------hccce
Confidence 00111123456778888899999999999988887765421 11 11112
Q ss_pred cEEEecCCC-CEEEEE-eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-
Q 001403 798 PCFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL- 874 (1084)
Q Consensus 798 ~~l~~s~dg-~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l- 874 (1084)
.-+..+.|- .+.+++ .+-.+.+|++.+|.....+.+|...+..+.++|.+.+...+++.||...|||+-.|.+++..
T Consensus 356 if~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 356 IFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred EEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 222222222 233333 36779999999999999999999999999999988888889999999999999998776554
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
.+| +.+..-+||+||..++....-|.+.|.....++
T Consensus 436 ~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 436 IGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred ccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 455 456677999999999998888999998876654
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.71 E-value=6.3e-15 Score=147.50 Aligned_cols=241 Identities=11% Similarity=0.172 Sum_probs=183.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~ 871 (1084)
...+..+.|..+...|..|+....++|..+..............|..+-|+. .++|..+.+. .+++++++.+..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I 81 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI 81 (391)
T ss_pred CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence 4456677788899999999877788888876555333333445677888876 3666666543 6999999988877
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E--eC
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE 948 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~--~d 948 (1084)
..+. ...+|.++.+. .++|+.+=.+. |+|||+..- +.+.+.+.......++.++++++.+.++|. + ..
T Consensus 82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~M-----klLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDM-----KLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccc-----eeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 7766 45679999996 45566554444 999999984 344444433222235677777777889998 3 56
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccceeeeE
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHA 1027 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1027 (1084)
|.|.|||+.+.+.+..+ ..|.+++.+++|++||.+|||+++.|+ |||+.+.+|+.+..|.+..+ .+...+
T Consensus 153 GdV~l~d~~nl~~v~~I-~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~--------~~~IyS 223 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTI-NAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY--------PVSIYS 223 (391)
T ss_pred ceEEEEEcccceeeeEE-EecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce--------eeEEEE
Confidence 88999999998888874 489999999999999999999999997 89999999999988885443 233457
Q ss_pred EEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1028 IAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1028 ~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++|+| |+.+|++.+..++|+||.+....
T Consensus 224 L~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 224 LSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 89999 58999999999999999996654
No 195
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.70 E-value=2e-15 Score=145.32 Aligned_cols=228 Identities=14% Similarity=0.175 Sum_probs=174.9
Q ss_pred CCeEEEEEcCCcee---EEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-------CeEEEEEcCCc---------eeeeee
Q 001403 814 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------STILIYNARSS---------EVISKL 874 (1084)
Q Consensus 814 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------g~i~iwd~~~~---------~~~~~l 874 (1084)
++.|.+.++..... ...|..+.+.|..++-+|.+.++|+++..+ ..+-||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 57888888765432 234666779999999999888899988653 25789988642 344555
Q ss_pred c-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCCccCCCCceEEEEcc--CCCEEEEEeCCe
Q 001403 875 E-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMTLAPSETHIQFHK--DQTRFLLVHETH 950 (1084)
Q Consensus 875 ~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~s~--dg~~la~~~d~~ 950 (1084)
. .+-+.|.|+.|.|++..+++-. |..|.+|+++.+......+. ....++. ...++-+||| ||..+++..|++
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~---~~ftsg~WspHHdgnqv~tt~d~t 194 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR---HSFTSGAWSPHHDGNQVATTSDST 194 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc---ceecccccCCCCccceEEEeCCCc
Confidence 5 4667899999999999999876 78899999998664321111 1112222 2578889998 899999999999
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEE
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIA 1029 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1029 (1084)
+..||+++..+...+...|...|..+.|.|+.+ +|+||+.||.|++||.+.-+....-. + .|.. +.-++.
T Consensus 195 l~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el-----~--~HsH--WvW~VR 265 (370)
T KOG1007|consen 195 LQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL-----P--GHSH--WVWAVR 265 (370)
T ss_pred EEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc-----C--CCce--EEEEEE
Confidence 999999999998888889999999999999875 58899999999999998765432111 1 1333 444788
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|.|...+++++|++|..|.+|....
T Consensus 266 fn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 266 FNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred ecCccceEEEecCCCceeEEEeccc
Confidence 9998789999999999999998654
No 196
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=1.8e-15 Score=149.54 Aligned_cols=277 Identities=14% Similarity=0.181 Sum_probs=191.3
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEccCCcccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDAR 424 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las~~~dg~v~iwd~~~~~~~~ 424 (1084)
..+|++..+ ++|++||..++..... +.+|...+..++|.. ....+.+|+.||+|++||+.+.....
T Consensus 41 ~~vav~lSn---------gsv~lyd~~tg~~l~~---fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a 108 (376)
T KOG1188|consen 41 TAVAVSLSN---------GSVRLYDKGTGQLLEE---FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESA 108 (376)
T ss_pred eeEEEEecC---------CeEEEEeccchhhhhe---ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhh
Confidence 557777666 9999999999655443 678888888999987 56789999999999999999876544
Q ss_pred ceeeeeccc-ccEeEEEeecCCCcEEEEEEeC----CCcEEEEECCCCce-eeEe-ccCCCcEEEEeecccCCCcEEEEE
Q 001403 425 QQLEIDAHV-GNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 425 ~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~----d~~i~vwd~~~g~~-~~~~-~~h~~~v~~~~~~~~~~~~~l~s~ 497 (1084)
.+ ...+|. .+..+++..-.++ ++++|.. +-.|.+||++..+. +..+ ..|.+.|+++.|+|+ +.++|++|
T Consensus 109 ~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~pnlLlSG 184 (376)
T KOG1188|consen 109 RI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DPNLLLSG 184 (376)
T ss_pred he-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CCCeEEee
Confidence 33 355665 4666777665666 6666643 56799999998766 5544 679999999999987 45799999
Q ss_pred ecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc----
Q 001403 498 SVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---- 569 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---- 569 (1084)
|.||.|.++|+..... +...-.+...|.++.|..++ +.+.+.+. .....+|+++.+.....+......
T Consensus 185 SvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~~~~~d~ 260 (376)
T KOG1188|consen 185 SVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPDVSADDL 260 (376)
T ss_pred cccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCccchhhhH
Confidence 9999999999976533 22333455679999999888 33555444 445899999988765554433100
Q ss_pred -----cCceEEEEEcCCCCEEEEEEC-CCcEEEEECC---CCeE---EEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 570 -----HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMN---KVQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 570 -----~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
-..+...-...+...++.++. -+...++-+. ++.. +..+.+ ++...|.++.|...+..+.+|+.||.
T Consensus 261 r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~TGGEDG~ 339 (376)
T KOG1188|consen 261 RKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYTGGEDGL 339 (376)
T ss_pred HhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeeccCCCce
Confidence 011111111223344444443 5555555433 3332 333333 23345788889988999999999999
Q ss_pred EEEEEcC
Q 001403 638 IKILETP 644 (1084)
Q Consensus 638 i~iwd~~ 644 (1084)
+.+|..+
T Consensus 340 l~~Wk~~ 346 (376)
T KOG1188|consen 340 LQAWKVE 346 (376)
T ss_pred EEEEecC
Confidence 9999864
No 197
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.69 E-value=4.6e-16 Score=147.95 Aligned_cols=286 Identities=16% Similarity=0.132 Sum_probs=195.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+++|.+.|+++.|-.+++ |.+|...|.|++|++.+..... .++ .|...|+.+.-.|++. +.+-+.|+.+.+|
T Consensus 10 LRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~---~~r~~g~~~it~lq~~p~d~---l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 10 LRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLP---LIRLFGRLFITNLQSIPNDS---LDTQGRDPLLILW 82 (323)
T ss_pred eccccchheehhhccchh-hhcccccceEEEEEeecCccch---hhhhhccceeeceeecCCcc---hhhcCCCceEEEE
Confidence 668999999999998876 8899999999999999976544 455 5677899999999865 8999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccC---CC----cEEEEEecCCe-EEEEECCCCCceEeec----CCCCeEEEEEEc
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKE---NI----HFIFSISVDGK-IKAWLYDSLGARVDYD----APGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~---~~----~~l~s~s~dg~-i~iwd~~~~~~~~~~~----~~~~~i~~~~~s 530 (1084)
++.-+..+. .|.-.++++.|.+.. ++ +.++.-+.... +++-|........... ...+.+.+..+.
T Consensus 83 ~ia~s~~i~---i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~ 159 (323)
T KOG0322|consen 83 TIAYSAFIS---IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD 159 (323)
T ss_pred EccCcceEE---EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence 988765432 233444555443221 00 11111111000 1111111111111111 122345555432
Q ss_pred -CCCCE-EEEEeeCCCCCeeEEEecCCCceEe----------eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 531 -ANGRR-LFSCGTSKEGESFLVEWNESEGAIK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 531 -~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~----------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
.++.+ ++.++. .++.+.+||+.++..+ .....|. .+|.++.+.+.-..=++|+.+..+..|+
T Consensus 160 ~~c~s~~lllaGy---Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~---qpvlsldyas~~~rGisgga~dkl~~~S 233 (323)
T KOG0322|consen 160 HACGSTFLLLAGY---ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK---QPVLSLDYASSCDRGISGGADDKLVMYS 233 (323)
T ss_pred ccccceEEEEEec---cCCeEEEEEccCCceeeccccccccccchhhcc---CcceeeeechhhcCCcCCCccccceeee
Confidence 23444 333332 3677999999998433 3333444 8999999998777778888888999998
Q ss_pred CCC--CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 599 MNK--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 599 ~~~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
+.. +.+.......-..+.|..+..-||++.+|+++.|+.||||+..+.+++..++.|...+++++|+
T Consensus 234 l~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfs----------- 302 (323)
T KOG0322|consen 234 LNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFS----------- 302 (323)
T ss_pred eccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeC-----------
Confidence 764 3322211111223458899999999999999999999999999999999999999999999998
Q ss_pred CceeEecCCCCCCCCccceecccCccccccc
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
|+...++.++.|+.|.+|++
T Consensus 303 -----------pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 303 -----------PDCELMAAASKDARISLWKL 322 (323)
T ss_pred -----------CCCchhhhccCCceEEeeec
Confidence 45667888899999999975
No 198
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.68 E-value=3.8e-16 Score=164.43 Aligned_cols=263 Identities=14% Similarity=0.178 Sum_probs=191.6
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC-----ccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-----CSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-----~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
.+|..|.+.|.+++|.|-..-|++++-| +++++|.++. .......-.+.+|.++|.|++.++++..
T Consensus 288 ~tl~s~~d~ir~l~~~~sep~lit~sed---------~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~ 358 (577)
T KOG0642|consen 288 FTLRSHDDCIRALAFHPSEPVLITASED---------GTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEH 358 (577)
T ss_pred eeeecchhhhhhhhcCCCCCeEEEeccc---------cchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceE
Confidence 4788999999999999999999999888 9999999932 1222233358899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCc-------cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc
Q 001403 403 LGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG 475 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~ 475 (1084)
+.+|+.||+|+.|++.... .......+.||.+.|+.+++|+... .|++++.||+++.|+...... .++..
T Consensus 359 ~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~ 435 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGE 435 (577)
T ss_pred EEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCC
Confidence 9999999999999654211 1112235779999999999999888 699999999999999776655 33322
Q ss_pred C--CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-------CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 476 H--GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 476 h--~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
. .+.-.++.+..+. -...++...-+.--+.+++.......+... ...+..+...|.+.+.+++.. +
T Consensus 436 ~~e~g~Plsvd~~ss~-~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he----d 510 (577)
T KOG0642|consen 436 PKEHGYPLSVDRTSSR-PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE----D 510 (577)
T ss_pred ccccCCcceEeeccch-hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc----C
Confidence 1 1222334432111 012222222222233333333333332211 124667778888888888765 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
..|+++|..++.++.....|. ..++++++.|+|.+|++++.|+.+++|.+....++.....
T Consensus 511 ~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 511 RSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred Cceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 679999999999999988888 8999999999999999999999999999987666655443
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1e-14 Score=163.83 Aligned_cols=303 Identities=17% Similarity=0.191 Sum_probs=209.2
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-CCCcceEEEec--CCCEEEEEECCCeEEEEEcCCCC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNK--NGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
.+...+.|+|-...++++.+.-.|+|||.+.++.+..+..+.. ...|..+.+-. |..++++++.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 3566788999999999999889999999999999888865432 23466777654 56678888889999998643210
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
. +...++++
T Consensus 1145 ~----------------------------------------~~~eLVTa------------------------------- 1153 (1387)
T KOG1517|consen 1145 W----------------------------------------KKPELVTA------------------------------- 1153 (1387)
T ss_pred c----------------------------------------CCceeEEe-------------------------------
Confidence 0 00001111
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC-C
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-D 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g 806 (1084)
|++=...+.+....| .-+.|-.. |
T Consensus 1154 ------w~~Ls~~~~~~r~~~-------------------------------------------------~v~dWqQ~~G 1178 (1387)
T KOG1517|consen 1154 ------WSSLSDQLPGARGTG-------------------------------------------------LVVDWQQQSG 1178 (1387)
T ss_pred ------eccccccCccCCCCC-------------------------------------------------eeeehhhhCC
Confidence 000000011111111 11223333 4
Q ss_pred CEEEEEeCCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecccccC--
Q 001403 807 AYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-- 880 (1084)
Q Consensus 807 ~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~-- 880 (1084)
.++++|.-..|+|||...-.....+.. ....++++.-+...|..+++|..||.|++||.... ..+...+.|+..
T Consensus 1179 ~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~ 1258 (1387)
T KOG1517|consen 1179 HLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEP 1258 (1387)
T ss_pred eEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCccc
Confidence 444444458899999988777776653 34567887766656899999999999999998764 356777889887
Q ss_pred EEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 881 VTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 881 V~~l~~spd~~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
|..+.+-+.|-. |++|+.||.|++||+..........+ ..+....+..+++..+++...+|+|+.+.|+||++. |
T Consensus 1259 Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G 1334 (1387)
T KOG1517|consen 1259 IVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-G 1334 (1387)
T ss_pred ceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-h
Confidence 999999987755 99999999999999997432221111 112111124899999999999999877999999987 4
Q ss_pred ceeeEee------cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 960 TCLKQWF------PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 960 ~~~~~~~------~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
+.+..+. ....+.+.+++|.|---+||+|+.|.+|.||......
T Consensus 1335 ~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1335 EQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 4433321 1125678999999999999999999999999887654
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=4.8e-15 Score=166.42 Aligned_cols=305 Identities=18% Similarity=0.266 Sum_probs=207.9
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC---CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH---GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
+-..+.|+|-.. .++++...-.|+|||.+.++.+..|..+ ...|+.+.+-...|..++++++.||.|+||+--..
T Consensus 1066 ~pk~~~~hpf~p--~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEP--QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred CCceeeecCCCc--eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence 455677888887 5787877778999999999998877654 45688888877778889999999999999953211
Q ss_pred CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 512 GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 512 ~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
.. +...|+++. ..-++. ..+.. +.-.-+.|.....+|+++|+-
T Consensus 1144 ~~------------------~~~eLVTaw------------~~Ls~~----~~~~r---~~~~v~dWqQ~~G~Ll~tGd~ 1186 (1387)
T KOG1517|consen 1144 KW------------------KKPELVTAW------------SSLSDQ----LPGAR---GTGLVVDWQQQSGHLLVTGDV 1186 (1387)
T ss_pred cc------------------CCceeEEee------------cccccc----CccCC---CCCeeeehhhhCCeEEecCCe
Confidence 10 122333332 111111 11111 111445677777788888888
Q ss_pred CcEEEEECCCCeEEEEEcCCCCCCCcceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 592 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 592 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..|+|||.......+.+...... .++++.-+ ..|+.+++|..||.|++||......-
T Consensus 1187 r~IRIWDa~~E~~~~diP~~s~t-~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~d--------------------- 1244 (1387)
T KOG1517|consen 1187 RSIRIWDAHKEQVVADIPYGSST-LVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPD--------------------- 1244 (1387)
T ss_pred eEEEEEecccceeEeecccCCCc-cceeecccccCCceEEEeecCCceEEeecccCCcc---------------------
Confidence 99999999998888888765442 34554433 25799999999999999998754110
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccce--EEEEEEecCCCe-EEEeecC
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK--ISRLTYNNGGQA-IFALASN 747 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~--i~~l~~s~~g~~-l~~~~~d 747 (1084)
.-+.+|.- |... |..+.+-+.|-. |++++.+
T Consensus 1245 -----------------------------s~v~~~R~-----------------h~~~~~Iv~~slq~~G~~elvSgs~~ 1278 (1387)
T KOG1517|consen 1245 -----------------------------SLVCVYRE-----------------HNDVEPIVHLSLQRQGLGELVSGSQD 1278 (1387)
T ss_pred -----------------------------ccceeecc-----------------cCCcccceeEEeecCCCcceeeeccC
Confidence 11122221 2233 777777776654 8999999
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT 827 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~ 827 (1084)
|.|++||+...... ...+.... ....+..+++.++++...+|+|+.+.|+||++. |+.
T Consensus 1279 G~I~~~DlR~~~~e-----------~~~~iv~~----------~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~-G~~ 1336 (1387)
T KOG1517|consen 1279 GDIQLLDLRMSSKE-----------TFLTIVAH----------WEYGSALTALTVHEHAPIIASGSAQLIKIYSLS-GEQ 1336 (1387)
T ss_pred CeEEEEecccCccc-----------ccceeeec----------cccCccceeeeeccCCCeeeecCcceEEEEecC-hhh
Confidence 99999998653110 00000000 002335899999999999999999999999986 344
Q ss_pred EEEEcC-------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 828 ILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 828 ~~~~~~-------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
+..++. ..+.+.|++|+| -.-++|+|+.|.+|.||....+.
T Consensus 1337 l~~~k~n~~F~~q~~gs~scL~FHP-~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1337 LNIIKYNPGFMGQRIGSVSCLAFHP-HRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred hcccccCcccccCcCCCcceeeecc-hhHhhhhccCCceEEEeecCCcC
Confidence 333332 235679999999 88899999999999999877543
No 201
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.67 E-value=8.9e-15 Score=141.17 Aligned_cols=286 Identities=17% Similarity=0.264 Sum_probs=199.8
Q ss_pred CceEEEEc--C-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-----EEEEEe
Q 001403 336 SPMSMDFH--P-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-----LLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~s--p-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-----~las~~ 407 (1084)
.+.++.|| | .+-+||.|+..-... +.|.|-.+......+....--.|.-+++.+.|.||.+ +||+.+
T Consensus 46 ~lya~~Ws~~~~~~~rla~gS~~Ee~~-----Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~ 120 (364)
T KOG0290|consen 46 PLYAMNWSVRPDKKFRLAVGSFIEEYN-----NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS 120 (364)
T ss_pred ceeeeccccCCCcceeEEEeeeccccC-----CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc
Confidence 66777787 3 346788876653332 5555555543222221111235889999999999874 566543
Q ss_pred CCCEEEEEEccCCcc-cccee-----eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCC
Q 001403 408 SKHIVQLYAYHGGSD-ARQQL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGA 478 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~-~~~~~-----~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~ 478 (1084)
| .+++|.+...+. +.... .-..+.+++++..|+.-... ++.+++-|-+..|||+++|.. ...+-.|..
T Consensus 121 -D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDK 197 (364)
T KOG0290|consen 121 -D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDK 197 (364)
T ss_pred -C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEEEeeccccceeeEEEecCc
Confidence 3 499999884221 11111 12246679999999876655 789999999999999998733 566788999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCC--CCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecC
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAP--GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~--~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
.|..++|.. +.-+.+++.+.||.||++|++..+. ...++.+ ..+...++|++. -+++|+...+ ...|.+.|+
T Consensus 198 EV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~d---S~~V~iLDi 273 (364)
T KOG0290|consen 198 EVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMD---SNKVVILDI 273 (364)
T ss_pred ceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcC---CceEEEEEe
Confidence 999999975 3447899999999999999987654 3333333 347788888874 4567766543 445899998
Q ss_pred CC-ceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeE------EEEEcCCCCCCCcceEEEec-C
Q 001403 555 SE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------LTTIDAGGGLPENPRICFNK-N 625 (1084)
Q Consensus 555 ~~-~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~------~~~~~~~~~~~~v~~v~~s~-~ 625 (1084)
+. ...+..+++|. ..|+.++|.|.. .+|+++++|..+.+||+...-. +.... ....|+.+.|++ .
T Consensus 274 R~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~ 347 (364)
T KOG0290|consen 274 RVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQ 347 (364)
T ss_pred cCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccC
Confidence 86 56678889988 999999999974 6788899999999999975322 11122 223589999996 5
Q ss_pred CCEEEEEECCCeEEE
Q 001403 626 GTLLAVIANENRIKI 640 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~i 640 (1084)
+..++++.. +.+.+
T Consensus 348 ~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 348 PDWIAICFG-KKLEI 361 (364)
T ss_pred CCEEEEEec-CeeeE
Confidence 667777665 34444
No 202
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.67 E-value=2e-14 Score=160.79 Aligned_cols=269 Identities=17% Similarity=0.161 Sum_probs=193.8
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCcc--ccce-eeeecccccEeEEE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD--ARQQ-LEIDAHVGNVNDLA 440 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~--~~~~-~~l~~h~~~V~~l~ 440 (1084)
+.+.||++........ .-.....|+|+.|+| +..++|.|..+|.|.+||+..+.. .... .....|..+++.+.
T Consensus 222 ~~~~vW~~~~p~~Pe~---~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vv 298 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPEL---VLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVV 298 (555)
T ss_pred ceEEEEecCCCCCceE---EEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEE
Confidence 4799999987622211 112567999999999 677888889999999999997765 1111 12347889999999
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCce------eeEec------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~------~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
|..+-...-+++++.||.|+.|+++.-.. ..... .-...++++.|.+. +...++.|+.+|.|.--+-
T Consensus 299 W~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r 377 (555)
T KOG1587|consen 299 WLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCR 377 (555)
T ss_pred EeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEec
Confidence 97654422489999999999998764322 11111 12345778888765 4467899999999877332
Q ss_pred CCCCc--------eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEc
Q 001403 509 DSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFD 579 (1084)
Q Consensus 509 ~~~~~--------~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s 579 (1084)
..... ...+..|.++|.++.++|-+..++..+. +.++++|... ...++..+..+. ..+.+++||
T Consensus 378 ~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWS 450 (555)
T KOG1587|consen 378 KGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWS 450 (555)
T ss_pred cCCcccccccccccccccccCcceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEc
Confidence 22211 2245667789999999998877666553 7789999987 666666666666 679999999
Q ss_pred CCCC-EEEEEECCCcEEEEECCCCe--EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 580 TAKD-QILAAGDDHVIKIWDMNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 580 ~~~~-~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|... .++++..||.|.+||+.... ++...... ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus 451 ptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 451 PTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred CcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 9865 45667789999999987543 33333333 345678888999999999999999999998743
No 203
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=8.3e-16 Score=156.89 Aligned_cols=199 Identities=17% Similarity=0.189 Sum_probs=163.0
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~ 876 (1084)
.+++|+++|..+++++ ||++|+|+..+...+.....|...|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999997 89999999888888888888999999999999 99999999999 899999999977766542
Q ss_pred --cccCEEEEEEcCCC-----CEEEEEeCCCcEEEEeCCCCceee-eeeeecCCCCccCCCCceEEEEccCCCEEEEE-e
Q 001403 877 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQT-CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H 947 (1084)
Q Consensus 877 --h~~~V~~l~~spd~-----~~l~s~s~dg~I~iwd~~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~ 947 (1084)
-......+.|+.|+ .+.++...-+.|+.|++....... .+..+....+. .|++++.|+||+++|.| .
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~----siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFK----SISSLAVSDDGKFLALGTM 301 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccC----cceeEEEcCCCcEEEEecc
Confidence 22345678888877 344444556778888877644311 11122222222 59999999999999995 8
Q ss_pred CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 948 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 948 d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
||.|-|++..+.+++.-....|..-|+.+.|+||.+++++.+.|..+.|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 9999999999999998888899999999999999999999999999999887753
No 204
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.66 E-value=1.2e-13 Score=151.05 Aligned_cols=330 Identities=13% Similarity=0.132 Sum_probs=200.8
Q ss_pred EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 493 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++. ++.|.++|+.+++.+..+.... .
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~ 79 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N 79 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence 3456667899999999998888888766555556789999999999864 5679999999999998887644 5
Q ss_pred eEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001403 573 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIAN-ENRIKILETPE 645 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~ 645 (1084)
...+++++||++++++. .++.+.++|.++.+.++.+.... ..+.+..+..+|....+++.-. .+.|.+.|...
T Consensus 80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 78899999999998865 78999999999999998876532 2234567777887775555444 47777777665
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
...+..... ..
T Consensus 160 ~~~~~~~~i---------------------------------------------------------------------~~ 170 (369)
T PF02239_consen 160 PKNLKVTTI---------------------------------------------------------------------KV 170 (369)
T ss_dssp SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred ccccceeee---------------------------------------------------------------------cc
Confidence 422211000 01
Q ss_pred cceEEEEEEecCCCeEEEee-cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 726 ANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
........|+|++++++++. .+..+-++|....+. +..+..|............|...-.--+.+.
T Consensus 171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccccccccccccCCCcceEEeecc
Confidence 12345678899999877654 356777777654322 1111112211100000000111100111222
Q ss_pred CCCEEE-EEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE----eCCCeEEEEEcCCceeeeeecccc-
Q 001403 805 NDAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEVISKLEGHS- 878 (1084)
Q Consensus 805 dg~~l~-~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g----~~dg~i~iwd~~~~~~~~~l~~h~- 878 (1084)
.+...+ ..+.+.+.+||..+++.++++....+. .-+..+| +++++.+. ...++|.++|..+.+.+.++....
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~ 315 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPG 315 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCC
Confidence 333332 223456678999999999999977766 7888899 88888887 455799999999998887776333
Q ss_pred cCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceee
Q 001403 879 KRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQT 914 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg--~I~iwd~~~~~~~~ 914 (1084)
..+..+.|++||+.+..+..++ .|.+||..+.+...
T Consensus 316 ~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~ 353 (369)
T PF02239_consen 316 KRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKK 353 (369)
T ss_dssp --EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred CcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEE
Confidence 3589999999999776655443 69999999966544
No 205
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.65 E-value=2.9e-15 Score=152.96 Aligned_cols=197 Identities=21% Similarity=0.211 Sum_probs=150.6
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee
Q 001403 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL 918 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~ 918 (1084)
.+++|++ +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||+.|++.+.| ..+||++.++.....
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~--- 222 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR--- 222 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence 7899999 89999999999999999998888888888899999999999999999999999 799999999732111
Q ss_pred ecCCCCccCCCCceEEEEccCC---CE-EEE-E-eCCeEEEEEcCCcce-----eeEeecCCCCCEEEEEEccCCCEEEE
Q 001403 919 QTPDGVMTLAPSETHIQFHKDQ---TR-FLL-V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT 987 (1084)
Q Consensus 919 ~~~~~~~~~~~~v~~~~~s~dg---~~-la~-~-~d~~i~vwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t 987 (1084)
..+.+. ......+.|+.|+ .+ +|+ . .-+.|+.|++..... .++.. .....|++++.|+||++++.
T Consensus 223 ~t~~~k---~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al 298 (398)
T KOG0771|consen 223 KTPFSK---DEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL 298 (398)
T ss_pred cCCccc---chhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence 111111 1257788999888 33 333 2 345577766643222 11111 12458999999999999999
Q ss_pred EeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 988 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 988 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+.||.|.|+++.+.+...-.. ..|...| ..+.|+| |.+.++..+.|.+..|..+.-
T Consensus 299 GT~dGsVai~~~~~lq~~~~vk-------~aH~~~V--T~ltF~P-dsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 299 GTMDGSVAIYDAKSLQRLQYVK-------EAHLGFV--TGLTFSP-DSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eccCCcEEEEEeceeeeeEeeh-------hhheeee--eeEEEcC-CcCcccccccCCceeEEEEee
Confidence 9999999999999987773332 2344434 4789999 588999999999999998865
No 206
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=1.6e-14 Score=164.31 Aligned_cols=234 Identities=13% Similarity=0.140 Sum_probs=162.7
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.|||....... .+..|...+.+++|||||++||.++.+ ..|.+||+.+++... +..+.+| ...++|
T Consensus 184 ~~i~i~d~dg~~~~----~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g~---~~~~~w 255 (429)
T PRK01742 184 YEVRVADYDGFNQF----IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRGH---NGAPAF 255 (429)
T ss_pred EEEEEECCCCCCce----EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCCc---cCceeE
Confidence 78999998765422 245678889999999999999988643 469999998875321 2223333 446899
Q ss_pred ecCCCcEEEEEE-eCCCcEEEE--ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCceEee
Q 001403 442 SAPCKQISVITC-GDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 442 s~d~~~l~l~s~-~~d~~i~vw--d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~~~ 517 (1084)
+|||+ .|+.+ +.+|.+.|| |+.++. ...+..+...+.+..|+| ||..|+..+ .+|...+|+++........
T Consensus 256 SPDG~--~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGS--RLAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCC--EEEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCeEE
Confidence 99999 45544 467765555 666665 455666777788888854 667666554 6788899987654332222
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
..+.. ....|+|||+.++..+. ..+.+||+.+++........ ....+.|+|+|++|+.++.++.+.+|
T Consensus 331 l~~~~--~~~~~SpDG~~ia~~~~-----~~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sPdG~~i~~~s~~g~~~~l 398 (429)
T PRK01742 331 VGGRG--YSAQISADGKTLVMING-----DNVVKQDLTSGSTEVLSSTF-----LDESPSISPNGIMIIYSSTQGLGKVL 398 (429)
T ss_pred ecCCC--CCccCCCCCCEEEEEcC-----CCEEEEECCCCCeEEecCCC-----CCCCceECCCCCEEEEEEcCCCceEE
Confidence 22222 45789999999988764 23777999988765433222 23457899999999999999988888
Q ss_pred EC--CCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 598 DM--NKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 598 d~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+ .+|.....+..+.. .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 75 35777777765433 4678889874
No 207
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.64 E-value=7.2e-14 Score=159.89 Aligned_cols=255 Identities=13% Similarity=0.122 Sum_probs=179.7
Q ss_pred ecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC----ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 384 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
+..|...|..++.+++ +.++++|+.||+|++||...- ...+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 6668888888888875 599999999999999998632 22233334444567899999999999 6888899999
Q ss_pred EEEEECCC--Cce-----eeEeccC-CCcEEEE-eecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEE
Q 001403 459 IKVWDAVT--GSR-----TYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRM 527 (1084)
Q Consensus 459 i~vwd~~~--g~~-----~~~~~~h-~~~v~~~-~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~ 527 (1084)
|++.+++. ++. ......+ .+.+.++ ++........++.+..-+.|..||+....... +.....+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99999875 221 1122222 3344444 33322222378888889999999998766544 344556689999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC---CCEEEEEE--CCCcEEEEECCCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~--~dg~i~iwd~~~~ 602 (1084)
+.+|-+.+++.|+. .|.+.+||++=+.++....... ..++..+..+|- ....++++ ..+.|.+|++.+|
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999986 6779999999888877765443 356776666654 34555544 5788999999999
Q ss_pred eEEEEEcCCCCCC-----------------CcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 603 QLLTTIDAGGGLP-----------------ENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 603 ~~~~~~~~~~~~~-----------------~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.....+......+ .....++...+..+.+|+.|..|+.||....
T Consensus 1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 7777665431110 1112333344668899999999999998865
No 208
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.63 E-value=2.9e-12 Score=140.32 Aligned_cols=335 Identities=15% Similarity=0.163 Sum_probs=201.7
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEE
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR 526 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 526 (1084)
.+++++-..++.|.|.|..+.+.+.++......-..+.+ ++||+++++++.||.|.++|+.+.+....+.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 345667777999999999999999999865554344556 5688899999999999999999999877776544 5678
Q ss_pred EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc----ccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCC
Q 001403 527 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNK 601 (1084)
Q Consensus 527 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~----~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~ 601 (1084)
+++|+||++++++... .+.+.++|.++.+.++.+..... ....+..+..+|....++..- +.+.|.+-|...
T Consensus 83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 9999999999987642 56799999999999988765431 124577888888888666655 458888889877
Q ss_pred CeEE--EEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCc
Q 001403 602 VQLL--TTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 678 (1084)
Q Consensus 602 ~~~~--~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 678 (1084)
.+.+ ..+.... ......|+|++++++++ ..++.|-++|..+++....+......-
T Consensus 160 ~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~------------------- 217 (369)
T PF02239_consen 160 PKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH------------------- 217 (369)
T ss_dssp SSCEEEEEEE--T---TEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-------------------
T ss_pred ccccceeeecccc---cccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc-------------------
Confidence 5544 3333222 25678999999987765 446789999998875554332100000
Q ss_pred eeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 679 ~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
. .+...+. .+ ..+.+.. ....+...++.-...
T Consensus 218 -----------~-----------~~~~~~p-----------hp---~~g~vw~--~~~~~~~~~~~ig~~---------- 249 (369)
T PF02239_consen 218 -----------P-----------GPGANFP-----------HP---GFGPVWA--TSGLGYFAIPLIGTD---------- 249 (369)
T ss_dssp -----------E-----------TTEEEEE-----------ET---TTEEEEE--EEBSSSSEEEEEE------------
T ss_pred -----------c-----------ccccccc-----------CC---CcceEEe--eccccceecccccCC----------
Confidence 0 0000000 00 0011111 111122221111111
Q ss_pred ccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE---e-C-CeEEEEEcCCceeEEEEcC
Q 001403 759 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTILTIMP 833 (1084)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~---s-d-g~i~vwd~~~~~~~~~~~~ 833 (1084)
.+.+|+..+.+.+...... ... .-+..+||++++.+. + + ++|.++|.++.+...++..
T Consensus 250 ------------~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~ 312 (369)
T PF02239_consen 250 ------------PVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP 312 (369)
T ss_dssp ------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred ------------ccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence 2334555555545554432 223 677889999999998 3 3 7899999999988888753
Q ss_pred C-CCCeEEEEEcCCCCcEEEEEeCC--CeEEEEEcCCceeeeeec
Q 001403 834 P-SPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVISKLE 875 (1084)
Q Consensus 834 ~-~~~i~~l~~s~~d~~~la~g~~d--g~i~iwd~~~~~~~~~l~ 875 (1084)
. ...+..+.|++ +|+.+.....+ +.|.+||..+.+.+.++.
T Consensus 313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 2 23599999999 67755544433 379999999999888876
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.63 E-value=4.5e-15 Score=153.35 Aligned_cols=296 Identities=14% Similarity=0.146 Sum_probs=223.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
|.+|.+.|..|.|+..|..|++|+.|..|.+||+..+..... -..+|...|....|-|.....-+++++.||.+++=.
T Consensus 138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 778999999999999999999999999999999998865432 234899999888898875544799999999999876
Q ss_pred CC-CCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee---cCCCC---eEEEEEEcCCCC
Q 001403 464 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGL---GCTRMAYSANGR 534 (1084)
Q Consensus 464 ~~-~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~---~i~~~~~s~d~~ 534 (1084)
+. +|.+. ..+..|.++|.-++..|. ....+.+++.|+.+.-.|++.......+ ..+.. ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt 294 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT 294 (559)
T ss_pred eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence 54 44433 455679999999988664 3367999999999999998876543322 22222 567888899776
Q ss_pred -EEEEEeeCCCCCeeEEEecCCCceE------eeeeeccc---cccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--C
Q 001403 535 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V 602 (1084)
Q Consensus 535 -~l~~~~~~~~~~~~i~~wd~~~~~~------~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~ 602 (1084)
.+++++. +.++++||.+.-.. +..+..+. ...-.|++++|+.++.-++++..|-.|++++... |
T Consensus 295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G 370 (559)
T KOG1334|consen 295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG 370 (559)
T ss_pred cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence 5566554 66789998764221 22222221 1124589999999988899989999999995432 2
Q ss_pred ----------eEEEE-EcCCCCCCCcceEEE-ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 603 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 603 ----------~~~~~-~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..+.. +++|.....|..+-| .|..+++++|++=|.|.||+-.+++.++.+.+...-|+|+.-+|
T Consensus 371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP---- 446 (559)
T KOG1334|consen 371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHP---- 446 (559)
T ss_pred CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCC----
Confidence 22223 566655555777765 57889999999999999999999999999988877888887764
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
--..|++.+-|..|+||...
T Consensus 447 ------------------~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 447 ------------------HLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred ------------------CCchhhccCCccceeeecCC
Confidence 45568889999999999864
No 210
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.62 E-value=5.9e-14 Score=135.56 Aligned_cols=242 Identities=13% Similarity=0.139 Sum_probs=175.3
Q ss_pred CCCCCccEEEecCCCC----EEEEEeCCeEEEEEcCC--cee--EEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 792 NSQEAVPCFALSKNDA----YLFSASGGVISLYIVMT--FKT--ILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~----~l~~~sdg~i~vwd~~~--~~~--~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
.|..+++.+.|.|+.. -+.+.++..+++|.+.. .+. ...+ ..+..++++..|..-+-++|.+.+-|.
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDT 173 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDT 173 (364)
T ss_pred CCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccC
Confidence 4889999999999874 23444567899999873 221 1111 234578999999987889999999999
Q ss_pred eEEEEEcCCce---eeeeecccccCEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEE
Q 001403 859 TILIYNARSSE---VISKLEGHSKRVTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 859 ~i~iwd~~~~~---~~~~l~~h~~~V~~l~~spd~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 934 (1084)
+..|||+.++. ....+-+|..+|..++|+.++ ..+||.|.||.||++|+..-+-. ..+....... .+...+
T Consensus 174 TCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS--TIIYE~p~~~---~pLlRL 248 (364)
T KOG0290|consen 174 TCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS--TIIYEDPSPS---TPLLRL 248 (364)
T ss_pred eEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc--eEEecCCCCC---Ccceee
Confidence 99999999873 356788999999999999865 67899999999999999974422 2333222211 257888
Q ss_pred EEccCC-CEEEE-E-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 935 QFHKDQ-TRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 935 ~~s~dg-~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
+|++.. +++|+ + ....|.|.|++.......-+.+|.+.|.+++|.| ....|.|++.|..+.+||+.+--......+
T Consensus 249 swnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP 328 (364)
T KOG0290|consen 249 SWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP 328 (364)
T ss_pred ccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence 998854 66777 4 4457999999876655545778999999999999 467899999999999999987543211121
Q ss_pred ccccCCCCcccceeeeEEEECCCCCCEEEEEeC
Q 001403 1011 TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043 (1084)
Q Consensus 1011 ~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1043 (1084)
...... +..|. .+.|+|..+..++.+..
T Consensus 329 ilay~a---~~EVN--qi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 329 ILAYTA---GGEVN--QIQWSSSQPDWIAICFG 356 (364)
T ss_pred hhhhhc---cceee--eeeecccCCCEEEEEec
Confidence 111111 23344 56777766778877653
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.61 E-value=6.9e-14 Score=146.32 Aligned_cols=248 Identities=10% Similarity=0.073 Sum_probs=156.3
Q ss_pred cCCCCEEEEEe-CCeEEEEEcCCceeEEEEc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------
Q 001403 803 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---------- 867 (1084)
Q Consensus 803 s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---------- 867 (1084)
.|.+--+..+- -|.+.+.|....+..+.+. -....++|+.|-|.+...++++-.+|.+++||..-
T Consensus 182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~ 261 (636)
T KOG2394|consen 182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ 261 (636)
T ss_pred CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence 45666666665 4888888875522222111 12368999999997677888888999999997531
Q ss_pred ----ce--------------eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCC
Q 001403 868 ----SE--------------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP 929 (1084)
Q Consensus 868 ----~~--------------~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~ 929 (1084)
+. ++..+.--.+.|...+|||||++||+.+.||.+||+|..+.+ ++........
T Consensus 262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYFG--- 333 (636)
T KOG2394|consen 262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYFG--- 333 (636)
T ss_pred ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhcc---
Confidence 11 111222224578899999999999999999999999999843 3334444333
Q ss_pred CceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 930 SETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
...|++|||||++|++ |.|.-|.||.+..++.+.. -.+|.+.|..|+|.| |.-+.-+++...=-|-.-......+
T Consensus 334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp---ytt~~ee~~~~~~~~~~~~~~~~~~ 409 (636)
T KOG2394|consen 334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP---YTTSTEEWNNFSGMDSTFSDVAHDF 409 (636)
T ss_pred ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc---cccccccccccccccccccchhccc
Confidence 7899999999999999 5889999999999888876 568999999999987 3333322211100000000000000
Q ss_pred ccccccCCCCcccceeeeEEEECCC-CCCEEEEEeCCCcEEEEcCCCCCCCcccCCCCCc
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPL-KPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEI 1067 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~-d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~ 1067 (1084)
. ......+...+ .+++-.+.++ ....|.+++.|-++.+||+.|... -++||.-.
T Consensus 410 ~-~r~~~~~S~~~--~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L--~~~~p~~~ 464 (636)
T KOG2394|consen 410 E-IRANGTGSAEG--CPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL--VPHPPLYR 464 (636)
T ss_pred c-cccCCCCCcCC--CcccccccccceEEEeecccccceEEEEecchhhc--ccCCchhh
Confidence 0 00001110000 1111111110 135688999999999999977663 22555543
No 212
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.61 E-value=1.8e-14 Score=163.88 Aligned_cols=236 Identities=17% Similarity=0.181 Sum_probs=156.5
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..|...+.+++|||||++||+.+++ .+ ...|.+||+.++...... .+.+| ...++||
T Consensus 187 ~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~--~~----~~~i~i~dl~tg~~~~l~-~~~g~---~~~~~wS 256 (429)
T PRK01742 187 RVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFE--NK----KSQLVVHDLRSGARKVVA-SFRGH---NGAPAFS 256 (429)
T ss_pred EEECCCCCCceEeccCCCccccceEcCCCCEEEEEEec--CC----CcEEEEEeCCCCceEEEe-cCCCc---cCceeEC
Confidence 33445555567788888899999999999999997664 11 267999999876533221 13333 3468999
Q ss_pred CCCCEEEEEe-CCCEEEEE--EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEe
Q 001403 398 PDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSF 473 (1084)
Q Consensus 398 pdg~~las~~-~dg~v~iw--d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~ 473 (1084)
|||++|+++. .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||++... .....+
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASLV 331 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEEe
Confidence 9999999875 57766555 6656542 2 45567777889999999994 2334445788888876532 222223
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.+.. ....| ++||+.|+..+.++ +.+||+.++........ .....+.|+|||+++++++.++. ...+.+++
T Consensus 332 -~~~~--~~~~~--SpDG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-~~~l~~~~ 402 (429)
T PRK01742 332 -GGRG--YSAQI--SADGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-GKVLQLVS 402 (429)
T ss_pred -cCCC--CCccC--CCCCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-ceEEEEEE
Confidence 3433 34556 55778888887765 45589887665432222 13356789999999999876322 22233333
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCC
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
.+|+..+.+..+. +.+...+|+|-
T Consensus 403 -~~G~~~~~l~~~~---g~~~~p~wsp~ 426 (429)
T PRK01742 403 -ADGRFKARLPGSD---GQVKFPAWSPY 426 (429)
T ss_pred -CCCCceEEccCCC---CCCCCcccCCC
Confidence 3577777787766 67888889874
No 213
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.61 E-value=1.7e-12 Score=127.72 Aligned_cols=241 Identities=13% Similarity=0.175 Sum_probs=172.1
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEEC
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA 464 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~ 464 (1084)
....++|+.|...+++|..+| .+||+.+--+... ....+.+.+.-+..---.+.+.|+-|+. -+.|.|||=
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence 455599999999999999998 9999987532211 1112222222222222234333444433 247999997
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCceEeecCC--CCeEEEEEEcCCCCEEEEEee
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAP--GLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~--~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
...+++.++. ...+|.++.+.. + .|+. -.++.|.+|.+. +.+....+... .....+++-..+...||.-+.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r--~--riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~ 156 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRR--D--RIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF 156 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcC--C--eEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC
Confidence 7778887776 678899999843 2 4444 356789999987 44444444332 234445544445455554443
Q ss_pred CCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 542 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
..|.|++-|+...+. -..+..|. ..|.+++.+-+|..+|++|..|+ |||||..+|..++.+........++
T Consensus 157 ---k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 157 ---KTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred ---ccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 357799999876555 35666777 89999999999999999999998 7999999999999998777667899
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+++|||+..+||++++.|++.|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
No 214
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=4.1e-13 Score=133.86 Aligned_cols=299 Identities=12% Similarity=0.124 Sum_probs=192.0
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 696 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 696 (1084)
+..++|++.-..++++..|-.|++|+.... ....++.
T Consensus 101 lr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks------------------------------------------ 137 (445)
T KOG2139|consen 101 LRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKS------------------------------------------ 137 (445)
T ss_pred eeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecc------------------------------------------
Confidence 567889987777889999999999987752 2222211
Q ss_pred cccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeec
Q 001403 697 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 697 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.....|++++|-|.+...++.+..+.|.+|......... ..++
T Consensus 138 ---------------------------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~-------r~~~--- 180 (445)
T KOG2139|consen 138 ---------------------------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNAN-------RNIR--- 180 (445)
T ss_pred ---------------------------hhhcceeEEEeccCCcceeeeeecceeEEEEcCcccccc-------cccc---
Confidence 023457777887776666666777778888765432100 0000
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEE
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g 854 (1084)
.-+..+... +...+| .+|+++.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|..+
T Consensus 181 ~~s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaA 256 (445)
T KOG2139|consen 181 MMSTHHLQV--LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAA 256 (445)
T ss_pred cccccchhh--eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEe
Confidence 001111111 223334 7999999999999999998 67899999999887766655667899999999 89999999
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcee----------eeee------e
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ----------TCRS------L 918 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~----------~~~~------~ 918 (1084)
.-|+..++|+.....-.....--++.|...+|+|+|++|..++. |.=++|.+...... .... +
T Consensus 257 t~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 257 TCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred cccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 99999999965543322233334558999999999998776543 33455555432110 0011 1
Q ss_pred ecCCCCccCCCCceEEEEccCCCEEEEEeCC---------eEEEEEcCCcceeeEeecCC--CCCEEEEEEcc---CCCE
Q 001403 919 QTPDGVMTLAPSETHIQFHKDQTRFLLVHET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCRM 984 (1084)
Q Consensus 919 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~---------~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~~ 984 (1084)
....+....-+++.+++|.|.|.+||+...+ .|.+||....-.+.....+. ...-..++|+| +|.+
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~l 415 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRL 415 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcE
Confidence 1112222223578999999999999995322 36667765433332221111 22345677776 6777
Q ss_pred EEEEeCCCcEEEEEcC
Q 001403 985 VFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~ 1000 (1084)
|..+=..|.+.-|++.
T Consensus 416 LsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 416 LSIAWSTGRIQRYPLT 431 (445)
T ss_pred EEEEeccCceEeeeeE
Confidence 8777777777777654
No 215
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.60 E-value=1.2e-15 Score=167.47 Aligned_cols=215 Identities=15% Similarity=0.230 Sum_probs=157.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--CCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--d~~i~v 461 (1084)
+..|+...+|++||-+.+.|+.|+..|.|+++++.+|.... ....|..+|+.+.=+.||.. .++.+. .--..+
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~--~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST--QLTSSSSSSPLSAL 1171 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce--eeeeccccCchHHH
Confidence 56688999999999999999999999999999999997665 67799999999999999994 443332 335779
Q ss_pred EECC-CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-cCC---CCeEEEEEEcCCCCEE
Q 001403 462 WDAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAP---GLGCTRMAYSANGRRL 536 (1084)
Q Consensus 462 wd~~-~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~---~~~i~~~~~s~d~~~l 536 (1084)
|++. ++...+++.+ -.++.|+.+ ...-+.|.......+||+.+.....++ ... ...-....|+|+.+++
T Consensus 1172 W~~~s~~~~~Hsf~e----d~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LI 1245 (1516)
T KOG1832|consen 1172 WDASSTGGPRHSFDE----DKAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLI 1245 (1516)
T ss_pred hccccccCccccccc----cceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceE
Confidence 9976 4555566653 235566433 233444555567889999988776552 211 1133678899999988
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+-- =.+||++..+.++.|.... ..+ .-.|+|.|..++.-++ |||+++.+.++....-.
T Consensus 1246 lnd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ld---- 1303 (1516)
T KOG1832|consen 1246 LND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLD---- 1303 (1516)
T ss_pred eeC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCcccc----
Confidence 753 2579999888887776544 222 2359999999999876 99999998888775432
Q ss_pred cceEEEecCCCEEEE
Q 001403 617 NPRICFNKNGTLLAV 631 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~ 631 (1084)
-..|.|+..|..+..
T Consensus 1304 qc~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1304 QCAVTFNSTGDVMYA 1318 (1516)
T ss_pred ceEEEeccCccchhh
Confidence 257888888876654
No 216
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.59 E-value=4.1e-10 Score=116.50 Aligned_cols=199 Identities=14% Similarity=0.120 Sum_probs=127.6
Q ss_pred CCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCC
Q 001403 793 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARS 867 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~i~iwd~~~ 867 (1084)
.-+.|.++..++||++++++.+ ..+.+.|+++|.....-+...+-|+..+|+| +++++|.+--+| .|++||+.+
T Consensus 400 ~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 400 DLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred CccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCC
Confidence 3456778889999999998885 7899999999988766666778899999999 999999988776 799999998
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCcc--------------
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMT-------------- 926 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~-------------- 926 (1084)
++....-. ..+.=.+-+|.||+++|..-+. |..+.=+....-. ...++....+...
T Consensus 479 ~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~vs--kPylv~L~~g~~sP~~q~p~~~~~ea~ 555 (668)
T COG4946 479 GKIYDVTT-PTAYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQRVS--KPYLVVLGRGYYSPFNQPPDEANSEAG 555 (668)
T ss_pred CeEEEecC-CcccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEeeec--cceEEEecCCCCChhhcCchhcCcccc
Confidence 87654322 2233355688899998876543 3333222221100 0000000000000
Q ss_pred ----------------CCCCceEEEEccCCCEEEEE---------------eCCeEEEEEcCCcceeeEeecCCCCCEEE
Q 001403 927 ----------------LAPSETHIQFHKDQTRFLLV---------------HETHLAIYEAEELTCLKQWFPISSVPISQ 975 (1084)
Q Consensus 927 ----------------~~~~v~~~~~s~dg~~la~~---------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~ 975 (1084)
..+.-.+++=-.+|+.+.-+ ..|.+.+||+++.+.-. -...+++
T Consensus 556 e~dle~ie~r~eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss 630 (668)
T COG4946 556 EVDLEGIEDRVEPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSS 630 (668)
T ss_pred ceehhhhcccccccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-----Hhcccce
Confidence 00111233333344333221 13456677776554322 1457899
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 976 ATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 976 l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
+..|+||+.+.. -.||.+++++++.
T Consensus 631 ~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 631 FRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred EEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 999999999998 6899999999986
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.59 E-value=2.1e-13 Score=133.95 Aligned_cols=238 Identities=13% Similarity=0.098 Sum_probs=181.6
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
-..+|+|.||++|++.+|++-.+ ..|.||.......-.....+..|...|++|.|+|.+..|++|+.|..-
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~---------~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna 79 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNN---------HEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA 79 (361)
T ss_pred ccCceeeeeecCCCceEEeccCC---------ceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc
Confidence 34589999999999999997544 789999987766444445688899999999999999999999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee----eEeccCCCcEEEEeeccc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~----~~~~~h~~~v~~~~~~~~ 488 (1084)
+||....+..-++...+..|...++++.|+|.+. .+++|+....|.||-.+...-= +.-+.+...|.++.|+++
T Consensus 80 yVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpn 157 (361)
T KOG1523|consen 80 YVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPN 157 (361)
T ss_pred cccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCC
Confidence 9999966666666667888999999999999999 7999999999999987754321 222446788999999774
Q ss_pred CCCcEEEEEecCCeEEEEEC-----CCC-------------CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 489 ENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
+-+|++|+.|+..+++.. +.. ....++....+.+..+.|+|+|..|+-.+. +..+.
T Consensus 158 --nVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H----ds~v~ 231 (361)
T KOG1523|consen 158 --NVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH----DSTVS 231 (361)
T ss_pred --cceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC----CCceE
Confidence 468999999999999853 211 111233356678999999999999999886 55688
Q ss_pred EecCCCce-EeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 551 EWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 551 ~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
+-|..... .+....... -+..++.|-.+. .++.++.|
T Consensus 232 ~~da~~p~~~v~~~~~~~---lP~ls~~~ise~-~vv~ag~~ 269 (361)
T KOG1523|consen 232 FVDAAGPSERVQSVATAQ---LPLLSVSWISEN-SVVAAGYD 269 (361)
T ss_pred EeecCCCchhccchhhcc---CCceeeEeecCC-ceeecCCC
Confidence 88876554 233333333 566777776543 45555554
No 218
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.57 E-value=2.7e-12 Score=128.07 Aligned_cols=288 Identities=15% Similarity=0.157 Sum_probs=188.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~i 414 (1084)
.+..++|++--.-+|++..| -.|+||+-+....... -..-...|+|++|-| .++-|++|+..| |.|
T Consensus 100 dlr~~aWhqH~~~fava~nd---------dvVriy~ksst~pt~L---ks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATND---------DVVRIYDKSSTCPTKL---KSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred ceeeEeechhhhhhhhhccC---------cEEEEeccCCCCCcee---cchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 67788888866667777666 8999999875222211 122346899999999 456788888877 999
Q ss_pred EEccCCccc-----------cceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEeccCCCcEEE
Q 001403 415 YAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGHGAPVYS 482 (1084)
Q Consensus 415 wd~~~~~~~-----------~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~h~~~v~~ 482 (1084)
|.....-.. .++..-.+| .+|+++.|.+||. .+++++. |..|.|||+.+|..+.-.....+.+.-
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~sl 243 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSL 243 (445)
T ss_pred EEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccccCCCceee
Confidence 987532111 112233355 5899999999999 6777765 678999999999877555445667888
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC--CCce--
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGA-- 558 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~--~~~~-- 558 (1084)
+.|+| |+.+|+.+.-|+..++|+....-.........+.|...+|+|+|++|+..... ...++-... +.+.
T Consensus 244 LkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f~~~~~~~~ 318 (445)
T KOG2139|consen 244 LKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTFDGEDSVFL 318 (445)
T ss_pred EEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEeecCCCcccc
Confidence 89955 77899999999999999654433333333334489999999999988766531 222222111 1110
Q ss_pred ---------Eee------eeeccccccCceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEc-CCCCC
Q 001403 559 ---------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTID-AGGGL 614 (1084)
Q Consensus 559 ---------~~~------~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~-~~~~~ 614 (1084)
.+. ...+...-.+++.+++|.|.|.++++.-.. +.|.+||.+..-.+.... +....
T Consensus 319 ~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~g 398 (445)
T KOG2139|consen 319 RPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGG 398 (445)
T ss_pred CcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccC
Confidence 000 111111123678999999999999986533 346778876544433331 11111
Q ss_pred CCcceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001403 615 PENPRICFNK---NGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 615 ~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..-..++|+| ++.+|.++-..|.+.-|++.
T Consensus 399 e~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 399 EYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred CCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 1235677776 67778888777888777654
No 219
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.57 E-value=1.4e-12 Score=128.25 Aligned_cols=240 Identities=12% Similarity=0.178 Sum_probs=168.7
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCC--CCeEEEEEcCCCCcEEE-EEeCC------CeEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIA-IGMDD------STILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la-~g~~d------g~i~iwd~~ 866 (1084)
...+++|..|...++++.+...++|+.+..+.......+. -.+..+-|- .++|| +|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEecc
Confidence 3455899999999999999899999998755433322222 223333342 23444 34433 389999966
Q ss_pred CceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-
Q 001403 867 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 945 (1084)
Q Consensus 867 ~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 945 (1084)
..+++.++. ...+|.++.+.+| .|+.. ..+.|+||.....- +...++.+..... +..+++=..+-.+||.
T Consensus 84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~-k~l~~~et~~NPk----GlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNP-KLLHVIETRSNPK----GLCSLCPTSNKSLLAFP 154 (346)
T ss_pred cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCCh-hheeeeecccCCC----ceEeecCCCCceEEEcC
Confidence 667777776 6788999999876 34444 45679999998532 1222333322222 2333333334445555
Q ss_pred E-eCCeEEEEEcCCcce-eeEeecCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 946 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 946 ~-~d~~i~vwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
| .-|.|.|-|+...+. .......|.+.|.+++.+-+|.++||+|..|+ |||||..+|+.++.+.... ....
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~------d~A~ 228 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV------DRAD 228 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC------chhe
Confidence 4 558999999986665 23456789999999999999999999999998 8999999999998877332 2233
Q ss_pred eeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
++ +++|+| |..+|+++++-|+|+|+.+....
T Consensus 229 iy--~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 229 IY--CIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred EE--EEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 55 789999 58999999999999999997755
No 220
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.57 E-value=5.2e-13 Score=152.97 Aligned_cols=269 Identities=16% Similarity=0.189 Sum_probs=187.8
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc---ce-eeeecCCCCCeEEEEEcC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML---FK-TALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~---~~-~~~~~~h~~~V~~v~fsp 398 (1084)
+..+..|+.|+..|..++.+++. .++++|+.| |+|+||+....... +. ...+.-....+.++.+.+
T Consensus 1038 G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~D---------GtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~ 1108 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDD---------GTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCG 1108 (1431)
T ss_pred ceEeehhhhccccccceeecCCCCceEEEecCC---------ceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEecc
Confidence 56888999999999999988766 999999988 99999999643221 11 112222467899999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCC--cccc--cee--eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGG--SDAR--QQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~--~~~~--~~~--~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~ 472 (1084)
.|..+|+++.||.|++.+++-. +... +.. .......-|..-+|....+...++.+..-+.|..||+++...+.+
T Consensus 1109 ~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1109 NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 9999999999999999998762 1110 000 112222234555565554433677777888999999988766655
Q ss_pred ec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcC---CCCEEEEEeeCCCCC
Q 001403 473 FE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA---NGRRLFSCGTSKEGE 546 (1084)
Q Consensus 473 ~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~---d~~~l~~~~~~~~~~ 546 (1084)
++ -..+.|++++.+ +.++++++|...|.+.+||++-......+..+. .++..++..| .....++++.. +.
T Consensus 1189 lk~~~~hG~vTSi~id--p~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~--~~ 1264 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVID--PWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSS--SN 1264 (1431)
T ss_pred hhcCccccceeEEEec--CCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEeccc--CC
Confidence 43 345789999994 466799999999999999999877766654333 3566665554 44566666542 46
Q ss_pred eeEEEecCCCceEeeeeeccc--------c--------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQ--------L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~--------~--------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
+.|.+|++.+|.....+.... . +.-......+..-+..+++|+.|+.|+.||....+..
T Consensus 1265 nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1265 NEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 679999999987766654331 0 0011223344445678899999999999998775544
No 221
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.56 E-value=1.6e-14 Score=148.45 Aligned_cols=269 Identities=15% Similarity=0.157 Sum_probs=214.5
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...-..+.++.+|++|+.|+..|.|..+|+.+++....+ . -...|.++.|-.+.+ +++.+ ..+.+.||| ..|
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei---~-v~Etv~Dv~~LHneq--~~AVA-QK~y~yvYD-~~G 200 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEI---N-VMETVRDVTFLHNEQ--FFAVA-QKKYVYVYD-NNG 200 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeeeee---e-hhhhhhhhhhhcchH--HHHhh-hhceEEEec-CCC
Confidence 446677999999999999999999999999998765532 2 345689999998888 55554 467899999 889
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
..++.++.| ..|..+.|.|. --+|++++..|.++.-|+..++....+....+.+..|+-+|-+..+-+|.. +|
T Consensus 201 tElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nG 273 (545)
T KOG1272|consen 201 TELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NG 273 (545)
T ss_pred cEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cc
Confidence 889888855 45778888654 368889999999999999999998888888889999999999888888765 78
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
+|.+|...+.+++..+..|. ++|.++++.++|.++++++.|..++|||++.-..+.++.... ....+++|..|
T Consensus 274 tVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~---~a~~ls~Sqkg- 346 (545)
T KOG1272|consen 274 TVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPH---PASNLSLSQKG- 346 (545)
T ss_pred eEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecCC---Ccccccccccc-
Confidence 89999999999999999998 999999999999999999999999999999887776665422 35678888766
Q ss_pred EEEEEECCCeEEEEEcCCC------CeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 628 LLAVIANENRIKILETPES------NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
.||.+ ....+.||.-... .+.-. ....+.|..+.|+|...++++|-..|.-
T Consensus 347 lLA~~-~G~~v~iw~d~~~~s~~~~~pYm~-H~~~~~V~~l~FcP~EDvLGIGH~~G~t 403 (545)
T KOG1272|consen 347 LLALS-YGDHVQIWKDALKGSGHGETPYMN-HRCGGPVEDLRFCPYEDVLGIGHAGGIT 403 (545)
T ss_pred ceeee-cCCeeeeehhhhcCCCCCCcchhh-hccCcccccceeccHHHeeeccccCCce
Confidence 34443 4457899953321 11111 1223478999999999999988777643
No 222
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.56 E-value=6.7e-13 Score=130.46 Aligned_cols=232 Identities=14% Similarity=0.160 Sum_probs=178.0
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-C
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-T 466 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~ 466 (1084)
..+|+|.+|++|+..+|.+.....|.||.....+......++..|...|+.++|+|... .|++|+.|..-.||... .
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~~ 87 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPSG 87 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCCC
Confidence 46999999999999999999999999999999887777779999999999999999998 69999999999999983 3
Q ss_pred C--ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE----eecCCCCeEEEEEEcCCCCEEEEEe
Q 001403 467 G--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 467 g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
+ ++.-.+..++...+++.|+|. ++.+++|+.-..|.+|-++..+.-. .-......|.++.|.|++-+|++++
T Consensus 88 ~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs 165 (361)
T KOG1523|consen 88 GTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGS 165 (361)
T ss_pred CeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccc
Confidence 3 344556678999999999765 4689999999999999887655432 2334456789999999999999998
Q ss_pred eCCCCCeeEEEecC-----CC-------------ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 001403 541 TSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
. |+..+++.. +. |+++..+. ...+.+..+.|+|+|..|+-.+.|..+.+-|....
T Consensus 166 ~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~---~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 166 T----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS---SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred c----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc---cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 7 444555532 11 22222332 22478999999999999999999999999998776
Q ss_pred e-EEEEEcCCCCCCCcceEEEecCCCEEEEE
Q 001403 603 Q-LLTTIDAGGGLPENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 603 ~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 632 (1084)
. .+....... -+..++.|-.+...++.|
T Consensus 239 ~~~v~~~~~~~--lP~ls~~~ise~~vv~ag 267 (361)
T KOG1523|consen 239 SERVQSVATAQ--LPLLSVSWISENSVVAAG 267 (361)
T ss_pred chhccchhhcc--CCceeeEeecCCceeecC
Confidence 5 233332221 235666676655444444
No 223
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=8.4e-12 Score=134.67 Aligned_cols=508 Identities=12% Similarity=0.139 Sum_probs=303.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc------------ccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~------------~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
......|++|+....|+|+|+.||.++|-.+.+... +..-.++.||.+.|.-+.|+.+.+ .|-|..
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD 90 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD 90 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence 346788999999999999999999999998875422 222336889999999999998887 688899
Q ss_pred CCCcEEEEECCCCceeeEec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
.+|-|.||-+-.|.-...+. ...+.|.+++| +.||..+.....||.|.+=.++... +..-...+.....+.|++|
T Consensus 91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D 167 (1189)
T KOG2041|consen 91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED 167 (1189)
T ss_pred CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence 99999999988876554432 24567888999 5578899999999998876665422 2222222334457889999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCce-------Eeeeeec-cccccCceEEEEE--------cCCCCEEEEEECCCcEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGA-------IKRTYQG-LQLQHNSVSVVHF--------DTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~-------~~~~~~~-~~~~~~~v~~~~~--------s~~~~~l~~~~~dg~i~i 596 (1084)
.+.++.+-. ++.+.++|....- +.....+ .......+..+.| -|+...++++..+|.+.|
T Consensus 168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi 243 (1189)
T KOG2041|consen 168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI 243 (1189)
T ss_pred HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence 988877654 4558888865321 1001111 1101122444444 357889999999999988
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC---------eEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
..-.+...-..+... ..+....|+++|..|++++.+. .|.+|. .-|..+.+++.....|+++.|-
T Consensus 244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWE-- 317 (1189)
T KOG2041|consen 244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWE-- 317 (1189)
T ss_pred hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEc--
Confidence 865544333333322 2367889999999999998752 222222 2233344444444444444443
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
..|-+++. ..|
T Consensus 318 --------------------------------------------------------------------g~gLriA~-Avd 328 (1189)
T KOG2041|consen 318 --------------------------------------------------------------------GTGLRIAI-AVD 328 (1189)
T ss_pred --------------------------------------------------------------------CCceEEEE-Eec
Confidence 22222111 112
Q ss_pred CceEEeeccCCcc----------CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 748 GVHLMWRWPRNDL----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 748 g~i~vw~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
+.|.+=++...-. ...+.......+..||..+.+.... .-....++++..+--.|+.-. ++.
T Consensus 329 sfiyfanIRP~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~ 401 (1189)
T KOG2041|consen 329 SFIYFANIRPEYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGV 401 (1189)
T ss_pred ceEEEEeecccceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCC
Confidence 2222211111000 0000011112355677766653322 233456677776655555544 455
Q ss_pred EEEEEc-CCceeEEEEc-----C-----CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee---------------
Q 001403 817 ISLYIV-MTFKTILTIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------------- 870 (1084)
Q Consensus 817 i~vwd~-~~~~~~~~~~-----~-----~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--------------- 870 (1084)
+.-++. ++...+..+. + .-..|.-.-..- ++..++.++.+. +.+|.....+.
T Consensus 402 i~e~s~le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e~-~~iWhy~~pK~~s~l~~~k~rkegr~ 479 (1189)
T KOG2041|consen 402 IPEYSTLENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEER-YFIWHYVLPKFNSVLAGVKIRKEGRF 479 (1189)
T ss_pred CcchhhhhcccceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEecccc-EEEEEEeccchhhhhhhhhhcccccc
Confidence 544422 1111111110 0 001121111122 566777777664 77887543211
Q ss_pred -----------------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 871 -----------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 871 -----------------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
..++.|..++|.+++.+ .++|..+-..|.|.-+.+....... ... ....+.+
T Consensus 480 h~Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n-----~y~----~n~~~y~ 548 (1189)
T KOG2041|consen 480 HGDDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTN-----SYP----VNPSIYS 548 (1189)
T ss_pred cCCCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeee-----ccc----cCchhee
Confidence 24455667788888886 5788889999999999998843222 111 1125888
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcC---CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
++..-+...+|+ ---|.+.+.|+. +|..+..+.......|+.+.|..|...|+.--+...+.|++
T Consensus 549 ~~lNCnstRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr 617 (1189)
T KOG2041|consen 549 IKLNCNSTRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR 617 (1189)
T ss_pred EeeccCcchhhhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence 999999988888 356777777765 46666555555677899999988877666555555555554
No 224
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.56 E-value=1e-10 Score=133.29 Aligned_cols=259 Identities=14% Similarity=0.130 Sum_probs=179.9
Q ss_pred ceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.+||+..+...... ..+..|...=.-- -.+.+++++..-+.+..=+..-. .+..-.+.|....+
T Consensus 26 p~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~---l~~~~~v~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l 95 (967)
T KOG0974|consen 26 PEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK---LLSGKIVTCAKSDEVYVKEASNQ-------IIERFSDWIFGAKL 95 (967)
T ss_pred CceEEeeCCchhHhhhhhhhcccccccccccce---eccceEEEEEeecceeecchhhh-------hhhhccccccccch
Confidence 67899999876543221 2233441000000 12345555544433333322221 11122333444556
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE-EE-EeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV-YS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v-~~-~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
.-+.+ .++.+..++.+.+||...+.....+....... .+ +.+-.+.+.-++++|+.-+.|.+|++...+....+.+
T Consensus 96 ~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~G 173 (967)
T KOG0974|consen 96 FEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKG 173 (967)
T ss_pred hhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceecc
Confidence 66666 57777778999999998888776665332211 11 2222244557899999999999999986555557889
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee-eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
|.+.|.++.++.||+++++++. |..+++|++.+++... ..-+|. ..+..++|.|+ .++++++|-+.++|+
T Consensus 174 HeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 174 HEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGEDCTCRVWG 244 (967)
T ss_pred cCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccceEEEEEe
Confidence 9999999999999999999986 6679999999988776 555666 88999999997 999999999999997
Q ss_pred CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.. +..+..+..|.. ..+..++..++....++++.|+.+++|+....
T Consensus 245 ~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 245 VN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 65 444456666544 35889999999999999999999999998754
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.55 E-value=9.7e-14 Score=145.18 Aligned_cols=245 Identities=13% Similarity=0.190 Sum_probs=170.8
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~l 403 (1084)
..+.|.||++.|.|++|+.||.+||+|+.| -.+.|||.-..+.. ..+-.||...|.++.|-| +.+.+
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD---------~r~ivWd~~~~Kll--hsI~TgHtaNIFsvKFvP~tnnriv 110 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDD---------TRLIVWDPFEYKLL--HSISTGHTANIFSVKFVPYTNNRIV 110 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCc---------ceEEeecchhccee--eeeecccccceeEEeeeccCCCeEE
Confidence 456799999999999999999999999998 89999999844433 345789999999999999 67789
Q ss_pred EEEeCCCEEEEEEccCCc-------cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-------e
Q 001403 404 GVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-------R 469 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-------~ 469 (1084)
++|..|..|+++|+...+ ...+...+..|...|..++-.|++.. .+.++++||+|+-+|++... +
T Consensus 111 ~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p~~~~ 189 (758)
T KOG1310|consen 111 LSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNPDEDC 189 (758)
T ss_pred EeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCccccc
Confidence 999999999999998521 12233356689999999999999965 78999999999999997532 1
Q ss_pred ee---EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE----e-ecCCCCeEEEEE-EcCCCCEEEEEe
Q 001403 470 TY---SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----D-YDAPGLGCTRMA-YSANGRRLFSCG 540 (1084)
Q Consensus 470 ~~---~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~----~-~~~~~~~i~~~~-~s~d~~~l~~~~ 540 (1084)
.. .+...--...++.++|.. ..+|+.|+.|-..++||.+...... . ...+.....|+. |+|.+- ..
T Consensus 190 ~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl----kn 264 (758)
T KOG1310|consen 190 PSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL----KN 264 (758)
T ss_pred cHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc----cC
Confidence 11 111112345677787764 4799999999999999953211111 0 011111222222 222211 00
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
..+...... ..++.+.|+|+|..|++.-....|+++|+..++....+
T Consensus 265 --------------~~gn~~~~~-------~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 265 --------------SQGNLDRYI-------TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred --------------cccccccce-------eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 001110000 23677899999998888777778999999887765544
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.6e-12 Score=147.49 Aligned_cols=238 Identities=11% Similarity=0.144 Sum_probs=157.6
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe---CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~---~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||........ +..+...+.+.+|||||+.||..+ .+..|.+|++.+|+... +....+.+..++|
T Consensus 179 ~~l~~~d~dg~~~~~----lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~----l~~~~~~~~~~~~ 250 (429)
T PRK03629 179 YELRVSDYDGYNQFV----VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ----VASFPRHNGAPAF 250 (429)
T ss_pred eeEEEEcCCCCCCEE----eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ccCCCCCcCCeEE
Confidence 678889887554322 233667899999999999999764 24579999998875322 2223334557899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC-CeEEEE--ECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAW--LYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-g~i~iw--d~~~~~~~~~ 516 (1084)
+|||+.+ +++.+.++ .|.+||+++++... +..+...+....|+ +||+.|+..+.+ |...+| ++.++.. ..
T Consensus 251 SPDG~~L-a~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~ 325 (429)
T PRK03629 251 SPDGSKL-AFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGRPQVYKVNINGGAP-QR 325 (429)
T ss_pred CCCCCEE-EEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCCceEEEEECCCCCe-EE
Confidence 9999952 23334444 58999998887543 44444566777885 467777766654 455555 5555433 33
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc---
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--- 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--- 593 (1084)
+...........|+|||++++..+... +...|++||+.+++... +... .......|+|||+.|+.++.++.
T Consensus 326 lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~SpDG~~i~~~s~~~~~~~ 399 (429)
T PRK03629 326 ITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAPNGTMVIYSSSQGMGSV 399 (429)
T ss_pred eecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECCCCCEEEEEEcCCCceE
Confidence 333444556789999999998876432 35579999998887543 3221 12345789999999999887764
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+.++++. |.....+..+.. .+...+|+|
T Consensus 400 l~~~~~~-G~~~~~l~~~~~--~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRFKARLPATDG--QVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCCeEECccCCC--CcCCcccCC
Confidence 6777774 555555554332 467788876
No 227
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.54 E-value=1.4e-08 Score=123.78 Aligned_cols=509 Identities=12% Similarity=0.132 Sum_probs=285.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEE----EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iw----d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
..+.|.++.|-+|...++.+..+|.|.+. +..+.. +. ....-...|.+++||||+. +|+....++++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~-~E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE-IE---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce-eE---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEEE
Confidence 45789999999999999999999999999 544432 11 2334566899999999999 56666557788776
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC----------c----eEeecCCCCeEEEEE
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----------A----RVDYDAPGLGCTRMA 528 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~----------~----~~~~~~~~~~i~~~~ 528 (1084)
+ .+-..+.+..-+..... ....++.|..+.=.-+.=..++ . ...+. ....-..++
T Consensus 148 t-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~IS 216 (928)
T PF04762_consen 148 T-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRIS 216 (928)
T ss_pred e-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEE
Confidence 5 55555554433221110 0112222111100000000000 0 01111 233556899
Q ss_pred EcCCCCEEEEEeeCCC-C-CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC---CCcEEEEECCCCe
Q 001403 529 YSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQ 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~-~-~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---dg~i~iwd~~~~~ 603 (1084)
|-.||.++|+.+.+.. + ...+++|+-+ |....+..... +--.+++|-|.|+.|++... ...|.+|..+ |-
T Consensus 217 WRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GL 291 (928)
T PF04762_consen 217 WRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GL 291 (928)
T ss_pred ECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-Cc
Confidence 9999999998876333 3 5789999965 66554444322 44567899999999998653 4556677653 43
Q ss_pred EEEEEcCC--CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 604 LLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 604 ~~~~~~~~--~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
.-..+... .....|..+.|++|+..||+...|. |.+|...+..-.-.... .+.
T Consensus 292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~---------------- 346 (928)
T PF04762_consen 292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS---------------- 346 (928)
T ss_pred EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc----------------
Confidence 33333332 2334589999999999999988665 99998876533221110 000
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC-CeEEEeecCCceEEeeccCCcc
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDL 760 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g-~~l~~~~~dg~i~vw~~~~~~~ 760 (1084)
....+..+.|+|.. ..|...+.+|.+..+++.
T Consensus 347 -------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---- 379 (928)
T PF04762_consen 347 -------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---- 379 (928)
T ss_pred -------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE----
Confidence 01112225555533 335555555666665532
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CCCEEEEEeCCeEEEEEcCCcee-----EEEEcCC
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMPP 834 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg~~l~~~sdg~i~vwd~~~~~~-----~~~~~~~ 834 (1084)
|++..+. ..+| |...+++.++.++.+-.+...-. ...+. .
T Consensus 380 --------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~ 425 (928)
T PF04762_consen 380 --------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-L 425 (928)
T ss_pred --------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-C
Confidence 2222111 0112 22234444455677766653321 12222 3
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--------eeeec----------ccccCEEEEEEcCCCCEEEEE
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKLE----------GHSKRVTGLVFSDALNILVSS 896 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--------~~~l~----------~h~~~V~~l~~spd~~~l~s~ 896 (1084)
...|.+++|++ ++..+|+-..||.|.+|....... ...+. .-...+..++|..+...++..
T Consensus 426 ~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (928)
T PF04762_consen 426 PSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLS 504 (928)
T ss_pred CCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEE
Confidence 46799999999 676789999999999998544221 11111 123457888998888777766
Q ss_pred eCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCC
Q 001403 897 GGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVP 972 (1084)
Q Consensus 897 s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~ 972 (1084)
..+ ..+.++++...+.. ..+....... +.+..+...++...++. ..+|.+...+..........++. ..+
T Consensus 505 ~~~~~~~~i~~~~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~-~c~ 578 (928)
T PF04762_consen 505 DSDSNQSKIVLVDIDDSENS--ASVESSTEVD---GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQIVKFPQ-PCP 578 (928)
T ss_pred ecCcccceEEEEEeccCCCc--eeEEEEeccC---ceEEEEeeCCCCcEEEEEECCCEEEEeecCCCccccccCCC-CCc
Confidence 654 67888888543211 1111111111 13455555555553444 67888887666543322211211 222
Q ss_pred EEEEEEccCCC---EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE
Q 001403 973 ISQATFSCDCR---MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1049 (1084)
Q Consensus 973 v~~l~fs~dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v 1049 (1084)
-..++...+.. .++.-+..|.+++ .+..++ ..+.+ ++.+ +.+|+.......+++
T Consensus 579 ~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~la--------------~~~tS--F~v~---~~~Ll~TT~~h~l~f 635 (928)
T PF04762_consen 579 WMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLLA--------------SNCTS--FAVT---DSFLLFTTTQHTLKF 635 (928)
T ss_pred EEEEEEECCccceeEEEEECCCCEEEE----CCEEEe--------------cCCce--EEEE---cCEEEEEecCceEEE
Confidence 23333333333 3443334444443 333331 11333 3444 468888888899999
Q ss_pred EcCC
Q 001403 1050 IEPN 1053 (1084)
Q Consensus 1050 w~~~ 1053 (1084)
..+.
T Consensus 636 v~L~ 639 (928)
T PF04762_consen 636 VHLN 639 (928)
T ss_pred EECc
Confidence 9997
No 228
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=6.7e-13 Score=150.53 Aligned_cols=237 Identities=14% Similarity=0.123 Sum_probs=157.5
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..+.+.+.+.+|||||+.||..+++ .|. ..+.+|++.++.... +......+..++||
T Consensus 182 ~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~--~g~----~~i~i~dl~~G~~~~----l~~~~~~~~~~~~S 251 (429)
T PRK03629 182 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFE--SGR----SALVIQTLANGAVRQ----VASFPRHNGAPAFS 251 (429)
T ss_pred EEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEec--CCC----cEEEEEECCCCCeEE----ccCCCCCcCCeEEC
Confidence 34444455556667777789999999999999986543 222 679999998764322 11223345578999
Q ss_pred CCCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCc--EEEEECCCCceee
Q 001403 398 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWDAVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~--i~vwd~~~g~~~~ 471 (1084)
|||+.|+.. +.+| .|.+||+++++.. .+..+...+....|+|||+ .|+..+. ++. |.++|+.++.. .
T Consensus 252 PDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~--~I~f~s~~~g~~~Iy~~d~~~g~~-~ 324 (429)
T PRK03629 252 PDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQ--NLAYTSDQAGRPQVYKVNINGGAP-Q 324 (429)
T ss_pred CCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCC--EEEEEeCCCCCceEEEEECCCCCe-E
Confidence 999999876 3344 5899999887543 3444455678899999999 4554443 344 55557766654 3
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+........|+ +||++++..+.+ ..|.+||++++.... +... .......|+|||+.|+..+.++. ...
T Consensus 325 ~lt~~~~~~~~~~~S--pDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~~-~~~~~p~~SpDG~~i~~~s~~~~-~~~ 399 (429)
T PRK03629 325 RITWEGSQNQDADVS--SDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTDT-FLDETPSIAPNGTMVIYSSSQGM-GSV 399 (429)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEEccCCCceEEEEECCCCCeEE-eCCC-CCCCCceECCCCCEEEEEEcCCC-ceE
Confidence 444344445566774 577788776543 358888988765433 2222 23346789999999999886433 456
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
+.++++. |.....+.++. +.+...+|+|
T Consensus 400 l~~~~~~-G~~~~~l~~~~---~~~~~p~Wsp 427 (429)
T PRK03629 400 LNLVSTD-GRFKARLPATD---GQVKFPAWSP 427 (429)
T ss_pred EEEEECC-CCCeEECccCC---CCcCCcccCC
Confidence 8888884 55556666665 6777888887
No 229
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.54 E-value=1.1e-12 Score=146.82 Aligned_cols=249 Identities=16% Similarity=0.194 Sum_probs=179.6
Q ss_pred CCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCcccc--ce-eeeecCCCCCeEEEEEcCCC--CEEEEEeC
Q 001403 335 SSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FK-TALVRDPGVSVNRVVWSPDG--SLLGVAYS 408 (1084)
Q Consensus 335 ~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~-~~~~~~h~~~V~~v~fspdg--~~las~~~ 408 (1084)
.+|.|+.|+|.. .+||.|.++ |.|.+||+...... .. ......|..+|+.+.|-.+- .-+++++.
T Consensus 243 s~v~~~~f~p~~p~ll~gG~y~---------GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ss 313 (555)
T KOG1587|consen 243 SEVTCLKFCPFDPNLLAGGCYN---------GQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSS 313 (555)
T ss_pred CceeEEEeccCCcceEEeeccC---------ceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEec
Confidence 499999999954 666667777 99999999876552 11 12345689999999997754 45999999
Q ss_pred CCEEEEEEccCCccccceeeee---------cccccEeEEEeecCCCcEEEEEEeCCCcEEEEE---CCCCc-----eee
Q 001403 409 KHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AVTGS-----RTY 471 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd---~~~g~-----~~~ 471 (1084)
||.|..|+++.-........+. .-...+++++|.+.... .++.|+++|.|.-=+ ...+. .+.
T Consensus 314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~ 392 (555)
T KOG1587|consen 314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYTPAPEVSYKGHS 392 (555)
T ss_pred CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCcccccccccccc
Confidence 9999999887543311111111 11236899999987776 688899999887733 22222 133
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.+..|.++|+++.++|-.. ..+.+++ |-++++|.-. ...+...+..+...+++++|||-...++++. +++|.+.
T Consensus 393 ~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~---d~~G~l~ 467 (555)
T KOG1587|consen 393 TFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATV---DGDGNLD 467 (555)
T ss_pred cccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEE---cCCCcee
Confidence 5567899999999876543 3444444 9999999888 5666777777777899999999887776665 3578899
Q ss_pred EecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 551 EWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 551 ~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
+||+..... +....-.. .....+.|+++|+.+++|...|++.+|++..
T Consensus 468 iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 468 IWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred hhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 999875433 22222222 5667888999999999999999999999864
No 230
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=1.1e-11 Score=131.38 Aligned_cols=286 Identities=12% Similarity=0.123 Sum_probs=189.6
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-----eCC-
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-----YSK- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-----~~d- 409 (1084)
.....++|++|+++|... ...++|++..+....... ....+.++.|||-|.+|.+- ..+
T Consensus 36 ~~~v~~~S~~G~lfA~~~----------~~~v~i~~~~~~~~~lt~-----~~~~~~~L~fSP~g~yL~T~e~~~i~~~~ 100 (566)
T KOG2315|consen 36 PCNVFAYSNNGRLFAYSD----------NQVVKVFEIATLKVVLCV-----ELKKTYDLLFSPKGNYLLTWEPWAIYGPK 100 (566)
T ss_pred cceeEEEcCCCcEEEEEc----------CCeEEEEEccCCcEEEEe-----ccceeeeeeecccccccccccccccccCC
Confidence 467889999999999952 267899999877533322 22388999999999999863 122
Q ss_pred ----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 410 ----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 ----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
-.+.+|+++++.....+ ..+ .+.. ++..|+.|.. ++.--..+.+.+|++..-+.+ .-.-|...|..+.+
T Consensus 101 ~~~~pn~~v~~vet~~~~s~~-q~k-~Q~~-W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~~~~i~~f~l 173 (566)
T KOG2315|consen 101 NASNPNVLVYNVETGVQRSQI-QKK-MQNG-WVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLSVSGITMLSL 173 (566)
T ss_pred CCCCCceeeeeeccceehhhe-ehh-hhcC-cccccccchh---hhhhhhcceEEEEecCCccce-eeeeeccceeeEEe
Confidence 24789999995332211 111 2222 5899999987 343334567999998763322 22336778888899
Q ss_pred cccCCCcEEEE-----EecCCeEEEEECCCCCceEeec---CCCCeEEEEEEcCCCCEEEEEe-eCC-------CCCeeE
Q 001403 486 HAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCG-TSK-------EGESFL 549 (1084)
Q Consensus 486 ~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d~~~l~~~~-~~~-------~~~~~i 549 (1084)
+|.+....+++ .+.-+.|++|.+.......... .-...-..+.|++-|+-|++.. .+- -|+..+
T Consensus 174 Spgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~L 253 (566)
T KOG2315|consen 174 SPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTL 253 (566)
T ss_pred cCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceE
Confidence 88766566665 3555679999876322211111 0111234577888777544332 211 245678
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
++.++........+.. .++|.++.|+|+++.+++ |-.--.+.|+|++ +..+..+... .-+++-|+|.|+
T Consensus 254 yll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~eg----pRN~~~fnp~g~ 324 (566)
T KOG2315|consen 254 YLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN 324 (566)
T ss_pred EEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCCC----CccceEECCCCC
Confidence 8888874444333332 379999999999988776 5577889999985 5666655422 347899999999
Q ss_pred EEEEEECC---CeEEEEEcCCCCeeeec
Q 001403 628 LLAVIANE---NRIKILETPESNSVDAA 652 (1084)
Q Consensus 628 ~l~~~~~d---g~i~iwd~~~~~~~~~~ 652 (1084)
+++.++-+ |.|.|||..+.+++..+
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~i~~~ 352 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKLIAKF 352 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhhcccc
Confidence 99988874 88999999987666544
No 231
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.9e-12 Score=136.75 Aligned_cols=283 Identities=14% Similarity=0.208 Sum_probs=208.1
Q ss_pred cCCCCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001403 332 EGSSSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg 410 (1084)
+|...-+.+..||||+|+.+ |.+- ..|++||+......+++.+ ....|...-.|.|-..++.-..|.
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YK---------P~ikvydlanLSLKFERhl---Dae~V~feiLsDD~SK~v~L~~DR 116 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYK---------PQIKVYDLANLSLKFERHL---DAEVVDFEILSDDYSKSVFLQNDR 116 (703)
T ss_pred CCccccceeEecCCCcEEEEecccC---------CceEEEEcccceeeeeecc---cccceeEEEeccchhhheEeecCc
Confidence 45557788999999999876 5444 8999999999888877632 345677777888888888888999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
+|.+...-+- ... ++ -...-..++++.-... |+.++....|.-.+++.|+.+..+....+.++++.+++.
T Consensus 117 ~IefHak~G~-hy~----~R-IP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~-- 186 (703)
T KOG2321|consen 117 TIEFHAKYGR-HYR----TR-IPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEE-- 186 (703)
T ss_pred eeeehhhcCe-eee----ee-cCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceeeeecCc--
Confidence 8877653321 110 11 0112234555544443 444444556888999999999999888899999988654
Q ss_pred CcEEEEEecCCeEEEEECCCCCceEeecCC------C-----CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGARVDYDAP------G-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~-----~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
..+|++|+.+|.|..||.+.......+... . ..|+++.|+.+|-.+++|+. .|.+.+||+++.++
T Consensus 187 hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iyDLRa~~p 262 (703)
T KOG2321|consen 187 HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIYDLRASKP 262 (703)
T ss_pred cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEEEcccCCc
Confidence 368999999999999999876654433221 1 25899999999999999986 66799999999887
Q ss_pred eeeeeccccccCceEEEEEcCC--CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
+..-.... .-+|..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+|+-|++.+++++-.++.
T Consensus 263 l~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~sGm~f~Ane~~~ 336 (703)
T KOG2321|consen 263 LLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPGSGMFFTANESSK 336 (703)
T ss_pred eeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecCCceEEEecCCCc
Confidence 65433222 367888999766 334444 355789999999999998886543 4889999999999999999888
Q ss_pred EEEEEcCCC
Q 001403 638 IKILETPES 646 (1084)
Q Consensus 638 i~iwd~~~~ 646 (1084)
+..|-++..
T Consensus 337 m~~yyiP~L 345 (703)
T KOG2321|consen 337 MHTYYIPSL 345 (703)
T ss_pred ceeEEcccc
Confidence 887766643
No 232
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.52 E-value=6.8e-12 Score=131.16 Aligned_cols=353 Identities=13% Similarity=0.098 Sum_probs=227.0
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC--
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH-- 410 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg-- 410 (1084)
-.-++..++|||.|++|++.- ...|.+|+-......... ....|..+.|||.++||.+-+..+
T Consensus 31 ~~~p~~~~~~SP~G~~l~~~~----------~~~V~~~~g~~~~~l~~~-----~~~~V~~~~fSP~~kYL~tw~~~pi~ 95 (561)
T COG5354 31 ENWPVAYVSESPLGTYLFSEH----------AAGVECWGGPSKAKLVRF-----RHPDVKYLDFSPNEKYLVTWSREPII 95 (561)
T ss_pred cCcchhheeecCcchheehhh----------ccceEEccccchhheeee-----ecCCceecccCcccceeeeeccCCcc
Confidence 344788999999999999831 156888888766544332 235899999999999999865433
Q ss_pred -------------EEEEEEccCCccccceeeeeccccc--Ee-EEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEe
Q 001403 411 -------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSF 473 (1084)
Q Consensus 411 -------------~v~iwd~~~~~~~~~~~~l~~h~~~--V~-~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~ 473 (1084)
.+.+||..+|..+. .+.+...+ .+ -+.|+-+.+ +++-- ....+.|+++ ++... ..+
T Consensus 96 ~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t~n~~~~p~ 168 (561)
T COG5354 96 EPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-TDNIEEHPF 168 (561)
T ss_pred ChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-CCccccCch
Confidence 49999999997655 34444333 33 678999888 34333 2446999997 44322 112
Q ss_pred ccC-CCcEEEEeecccCCCcEEEE-----EecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC----
Q 001403 474 EGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK---- 543 (1084)
Q Consensus 474 ~~h-~~~v~~~~~~~~~~~~~l~s-----~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~---- 543 (1084)
..- ...|....++|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-....
T Consensus 169 ~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksn 248 (561)
T COG5354 169 KNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSN 248 (561)
T ss_pred hhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecc
Confidence 111 24577778877766666554 45678899999886555444333333334678888898876543211
Q ss_pred ---CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE--ECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 544 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 544 ---~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
-|+..++++++....+ ....... ++|...+|.|.++.+++. ..+-.+.++|++.. ....+.... =+
T Consensus 249 KsyfgesnLyl~~~~e~~i-~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~~----rN 319 (561)
T COG5354 249 KSYFGESNLYLLRITERSI-PVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQK----RN 319 (561)
T ss_pred cceeccceEEEEeeccccc-ceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCcc----cc
Confidence 1345688888773332 2222334 799999999999888764 57889999999765 444443221 35
Q ss_pred eEEEecCCCEEEEEECC---CeEEEEEcCCCCeee-eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 619 RICFNKNGTLLAVIANE---NRIKILETPESNSVD-AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~-~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
.+.|+|.++++++++-| |.+.+||....-.+. .+.+ ....-+.|+|++....+....- .
T Consensus 320 T~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~--~n~s~~~wspd~qF~~~~~ts~----------k----- 382 (561)
T COG5354 320 TIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG--LNTSYCDWSPDGQFYDTDTTSE----------K----- 382 (561)
T ss_pred cccccCcccEEEEecCCccccceEEeccCCceEEEEEeec--CCceEeeccCCceEEEecCCCc----------c-----
Confidence 78999999999997765 789999987653332 2322 2233345665554442221110 0
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCC
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 748 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 748 (1084)
--.|+.+.+|++..... ...+.+.|.|.|++..+.+...
T Consensus 383 -~~~Dn~i~l~~v~g~~~--------------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 383 -LRVDNSIKLWDVYGAKV--------------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred -cccCcceEEEEecCchh--------------hhhhhccccCCcccceeeccCC
Confidence 12467889999763221 2455677888888777776653
No 233
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.52 E-value=1.5e-09 Score=112.43 Aligned_cols=143 Identities=13% Similarity=0.138 Sum_probs=113.3
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CC-eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg-~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
++...|.-..+..+++-++.|. || .+-++|..+++.. .+...-+.|.++..++ +|++++++.....+.+.|+++|.
T Consensus 357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~k-r~e~~lg~I~av~vs~-dGK~~vvaNdr~el~vididngn 434 (668)
T COG4946 357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVK-RIEKDLGNIEAVKVSP-DGKKVVVANDRFELWVIDIDNGN 434 (668)
T ss_pred CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEE-EeeCCccceEEEEEcC-CCcEEEEEcCceEEEEEEecCCC
Confidence 3566677777777777777776 55 8999999887654 4445667899999999 99999999999999999999998
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
....-+...+-|+.++|+|+++++|-+--+| .|+++|+.+++... +.+..++ -.+-+|.|||++|.-
T Consensus 435 v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~---vTT~ta~------DfsPaFD~d~ryLYf 505 (668)
T COG4946 435 VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD---VTTPTAY------DFSPAFDPDGRYLYF 505 (668)
T ss_pred eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE---ecCCccc------ccCcccCCCCcEEEE
Confidence 7655555678899999999999999887665 58999999976332 4444443 346789999998865
No 234
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.52 E-value=1.2e-10 Score=132.77 Aligned_cols=194 Identities=16% Similarity=0.201 Sum_probs=150.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC-----CeEEEEEcCCCCEEEEEeCCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~-----~V~~v~fspdg~~las~~~dg 410 (1084)
.|....+.-+.+.++....+ ..+.|||........+.. +.. ...-+.++++.-++++|+.-+
T Consensus 89 wi~g~~l~~e~k~i~l~~~~---------ns~~i~d~~~~~~~~~i~----~~er~~l~~~~~~g~s~~~~~i~~gsv~~ 155 (967)
T KOG0974|consen 89 WIFGAKLFEENKKIALVTSR---------NSLLIRDSKNSSVLSKIQ----SDERCTLYSSLIIGDSAEELYIASGSVFG 155 (967)
T ss_pred cccccchhhhcceEEEEEcC---------ceEEEEecccCceehhcC----CCceEEEEeEEEEeccCcEEEEEeccccc
Confidence 33445566666777776555 889999987665544321 222 222345688888999999999
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~ 489 (1084)
.|.+|+....+... .+.+|.+.|.++.|+.||+ ++++.|+|.++++|++++++... +.-+|...|..++|.+.
T Consensus 156 ~iivW~~~~dn~p~---~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n- 229 (967)
T KOG0974|consen 156 EIIVWKPHEDNKPI---RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN- 229 (967)
T ss_pred cEEEEeccccCCcc---eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCcccccccceeEEEEeccc-
Confidence 99999998332111 5789999999999999999 89999999999999999998876 77789999999999653
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 556 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~ 556 (1084)
.+++++.|-+.++|+.+..... .+..| ...+..++..++...+++++. |+.+++||+..
T Consensus 230 ---~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~ 289 (967)
T KOG0974|consen 230 ---RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNG 289 (967)
T ss_pred ---eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhc
Confidence 8999999999999977654444 44444 447999999999888888886 66799999764
No 235
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=5.2e-12 Score=144.47 Aligned_cols=237 Identities=13% Similarity=0.076 Sum_probs=161.4
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||....... .+..|...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+.+.+.+|
T Consensus 182 ~~l~~~d~dg~~~~----~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~----~l~~~~g~~~~~~~ 253 (435)
T PRK05137 182 KRLAIMDQDGANVR----YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE----LVGNFPGMTFAPRF 253 (435)
T ss_pred eEEEEECCCCCCcE----EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE----EeecCCCcccCcEE
Confidence 67888888654332 14457789999999999999998763 468999999988642 34566677889999
Q ss_pred ecCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CC--eEEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~--i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++. |.+||++++.. ..+..+........|+ +||+.++..+. +| .|.++|++......
T Consensus 254 SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~- 328 (435)
T PRK05137 254 SPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGSPQLYVMNADGSNPRR- 328 (435)
T ss_pred CCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCCCeEEEEECCCCCeEE-
Confidence 999995 3445555554 77789887765 4566666666677885 46777776663 34 57777876554433
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----- 591 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----- 591 (1084)
+......+....|+|||+.|+..... .+...|.+||+.++.. +.+.. . ..+....|+|||+.|+..+.+
T Consensus 329 lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~spDG~~i~~~~~~~~~~~ 402 (435)
T PRK05137 329 ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAPNGRVIMFFRQTPGSGG 402 (435)
T ss_pred eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccC-C---CCCCCCeECCCCCEEEEEEccCCCCC
Confidence 33334456678899999999987643 2356799999866543 33322 1 245678999999998876543
Q ss_pred -CcEEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 592 -HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 592 -g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
..++++|+..+.. ..+...+ .+...+|+|
T Consensus 403 ~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 403 APKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred cceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 3578888876554 3443222 255667776
No 236
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=3.4e-12 Score=145.75 Aligned_cols=238 Identities=16% Similarity=0.131 Sum_probs=157.5
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..|.+||........ +..+...+.+.+|||||+.|+..+. +..|.+||+.+++.. .+..+.+...+.+|
T Consensus 184 ~~l~i~D~~g~~~~~----lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~----~l~~~~g~~~~~~~ 255 (433)
T PRK04922 184 YALQVADSDGYNPQT----ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE----LVASFRGINGAPSF 255 (433)
T ss_pred EEEEEECCCCCCceE----eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE----EeccCCCCccCceE
Confidence 678899986433221 3446778999999999999998864 346999999887642 23344455668899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++ .|.+||+.+++. ..+..+.......+|+ +||+.++..+. +|. |.++++.+++...
T Consensus 256 SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~- 330 (433)
T PRK04922 256 SPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGRPQIYRVAASGGSAER- 330 (433)
T ss_pred CCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCeEE-
Confidence 999995 334445555 599999988875 4455565555667884 46777776654 455 5555665544322
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---Cc
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HV 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~ 593 (1084)
+..........+|+|||+.++....+ .+...|.+||+.+++......+ .......|+|||++++..+.+ +.
T Consensus 331 lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~~Lt~~-----~~~~~p~~spdG~~i~~~s~~~g~~~ 404 (433)
T PRK04922 331 LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVRTLTPG-----SLDESPSFAPNGSMVLYATREGGRGV 404 (433)
T ss_pred eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeEECCCC-----CCCCCceECCCCCEEEEEEecCCceE
Confidence 22233344578999999999887642 3355799999988876533222 123456899999998886653 46
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
|++++... .....+..+. ..+...+|+|
T Consensus 405 L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence 88888854 3444444322 2356667775
No 237
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.51 E-value=1.3e-12 Score=149.20 Aligned_cols=237 Identities=14% Similarity=0.129 Sum_probs=157.9
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..|...+.+.+|||||++||+.+++ .+ ...|.+||+.++.... +..+.....+++||
T Consensus 187 ~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~--~~----~~~l~~~dl~~g~~~~----l~~~~g~~~~~~~S 256 (433)
T PRK04922 187 QVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFE--RG----RSAIYVQDLATGQREL----VASFRGINGAPSFS 256 (433)
T ss_pred EEECCCCCCceEeecCCCccccccCCCCCCEEEEEecC--CC----CcEEEEEECCCCCEEE----eccCCCCccCceEC
Confidence 33444555666777787889999999999999997654 12 2679999998765432 22344455688999
Q ss_pred CCCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CCCc--EEEEECCCCceee
Q 001403 398 PDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWDAVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d~~--i~vwd~~~g~~~~ 471 (1084)
|||+.|+.. +.+| .|.+||+.+++.. .+..+.......+|+|||+ .++..+ .++. |.++|+.+++..
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~--~l~f~sd~~g~~~iy~~dl~~g~~~- 329 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGK--SIYFTSDRGGRPQIYRVAASGGSAE- 329 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCC--EEEEEECCCCCceEEEEECCCCCeE-
Confidence 999988754 4444 5999999987632 3445655567889999999 455444 3444 677787777643
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+.......+|+ ++|+.++..+.++ .|.+||+.+++.. .+.. ........|+|||++++..+.. .+...
T Consensus 330 ~lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~-~~~~~~p~~spdG~~i~~~s~~-~g~~~ 404 (433)
T PRK04922 330 RLTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTP-GSLDESPSFAPNGSMVLYATRE-GGRGV 404 (433)
T ss_pred EeecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeE-ECCC-CCCCCCceECCCCCEEEEEEec-CCceE
Confidence 333333344456774 4677887665443 5899998776654 3322 2234567899999999887754 34667
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
|+++++.. .....+..+. +.+...+|+|
T Consensus 405 L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp 432 (433)
T PRK04922 405 LAAVSTDG-RVRQRLVSAD---GEVREPAWSP 432 (433)
T ss_pred EEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence 99999854 4445554433 4566667766
No 238
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.50 E-value=6.9e-14 Score=143.76 Aligned_cols=279 Identities=18% Similarity=0.169 Sum_probs=214.6
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
|.--......+.++.+|++|+.|..- |.+.-+|+.+....++.. -...|.++.|-.+.+++|++-..
T Consensus 125 L~l~eFGPY~~~ytrnGrhlllgGrK---------GHlAa~Dw~t~~L~~Ei~----v~Etv~Dv~~LHneq~~AVAQK~ 191 (545)
T KOG1272|consen 125 LSLPEFGPYHLDYTRNGRHLLLGGRK---------GHLAAFDWVTKKLHFEIN----VMETVRDVTFLHNEQFFAVAQKK 191 (545)
T ss_pred ccccccCCeeeeecCCccEEEecCCc---------cceeeeecccceeeeeee----hhhhhhhhhhhcchHHHHhhhhc
Confidence 33334478899999999999997544 999999999988777654 23578999999999999988654
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.+.|||-..- .+. .++.| ..|..+.|-|--- +|++++..|.++.-|+.+|+.+..+..-.+.+..++-+|-+
T Consensus 192 -y~yvYD~~Gt-ElH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~N 263 (545)
T KOG1272|consen 192 -YVYVYDNNGT-ELH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYN 263 (545)
T ss_pred -eEEEecCCCc-EEe---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCcc
Confidence 5999997653 233 45555 3589999999866 89999999999999999999999998888888888876543
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
..+-+|...|+|.+|.....+++..+..|.++|.++++.++|+++++.+. |..+.|||+++-..+.++...
T Consensus 264 --aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp--- 334 (545)
T KOG1272|consen 264 --AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP--- 334 (545)
T ss_pred --ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC---
Confidence 58888999999999999999999999999999999999999999999987 666999999987766666552
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCe--EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+...+++|..| +++.+....+.||. ...+. .-..+-.|.-...|..+.|.|-...|-+|...|.-.+.
T Consensus 335 -~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsil 406 (545)
T KOG1272|consen 335 -HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSIL 406 (545)
T ss_pred -CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEe
Confidence 356777887654 45555566899993 33322 11111122222368899999977777777666544443
No 239
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=1.7e-10 Score=124.79 Aligned_cols=526 Identities=10% Similarity=0.108 Sum_probs=318.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc------------cceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM------------LFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~------------~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
...|++|.....|+|.|..| |.++|-.+.+... ..-...+.||...|..+.|+.+.+.|
T Consensus 16 kL~c~~WNke~gyIAcgG~d---------GlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 16 KLHCAEWNKESGYIACGGAD---------GLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred eEEEEEEcccCCeEEecccc---------ceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 56799999999999999877 8899988764321 11223588999999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYS 482 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~~~v~~ 482 (1084)
-+...+|.|.||-+-.|+-.... .-....+.|.+++|+.||. .+.....||.|.|=.++..+.- +.+++ .....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg--~~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKG--QLLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcch--heccc
Confidence 99999999999999888654433 2234566799999999999 6777788998877665433221 12222 11234
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCCc-------eE----eecCCCCeEEEEEEc--------CCCCEEEEEeeCC
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSK 543 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~----~~~~~~~~i~~~~~s--------~d~~~l~~~~~~~ 543 (1084)
+.| ++|...++.+-.+|.+.++|....-. .. .+......+..+.|. ||...+++|..
T Consensus 162 v~w--s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLW--SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eee--cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 566 44656777778889999998653211 00 111122234444442 57788888875
Q ss_pred CCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---------CcEEEEECCCCeEEEEEcCCCC
Q 001403 544 EGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
+|.+.+..-.+ .+++..-.+ -.+..+.|+++|..+++++.+ +.|.+|.. -|+.+.++...+.
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlkvpg~ 309 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLKVPGS 309 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEecc-chhheEEEecCCc
Confidence 55566654332 233322222 357888999999999998743 24555543 5677777776654
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEe-cCCCCCCCCc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV-NEDPKEDVKP 692 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~-~~~~s~~~~~ 692 (1084)
.|++++|-..|-.++.+- |+.|.+=++...-....+. . .+.+ ... ++.
T Consensus 310 --~It~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~---------------------TvVy~y~~--~e~-- 358 (1189)
T KOG2041|consen 310 --CITGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---E---------------------TVVYVYQK--EEL-- 358 (1189)
T ss_pred --eeeeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---e---------------------EEEEEEcc--CCC--
Confidence 588999988887777664 5677776655331111110 0 0000 000 000
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
..-.|.+||..+.+.... ......++++..+.-.|+.-..+|.+.-++.-... -
T Consensus 359 -----p~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~------------~ 412 (1189)
T KOG2041|consen 359 -----PQYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR------------S 412 (1189)
T ss_pred -----cceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhcc------------c
Confidence 001245566543222111 11234456666666555555556655443211000 0
Q ss_pred eeecCCCCCccccccCcCCC---CCCCccEEEecCCCCEEEEEeCCeEEEEEcCCcee----------------------
Q 001403 773 RLYQPRHGPQFMVNDTTDSN---SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------------------- 827 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~---~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---------------------- 827 (1084)
++|-.. ..+.. +.. .-..|.-.-..-++.+++.++...+.+|.....+.
T Consensus 413 ~~~~l~-----LCNSI-GT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 413 RVYFLQ-----LCNSI-GTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred ceEEEe-----eeccc-CCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 111000 00000 000 11112222223367788888888888887532110
Q ss_pred ----------EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEe
Q 001403 828 ----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 897 (1084)
Q Consensus 828 ----------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s 897 (1084)
..++.+...+|.+++.+. ++|.++-..|.|.-|.+.+..+..... -...|..+++.-+..++|...
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhh
Confidence 134556667888888863 689999999999999999877665544 456789999998899999988
Q ss_pred CCCcEEEEeCCCC-ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCc
Q 001403 898 GDAQIFVWDVDGW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL 959 (1084)
Q Consensus 898 ~dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~ 959 (1084)
.-|.+.+.|+.-. .......+...+. ..|+.+.|..|+..+.+ -....++|++-.+.
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndp 621 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDP 621 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCc
Confidence 8899999888721 1111111222221 25889999998877666 44556788775443
No 240
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.49 E-value=2.7e-08 Score=121.30 Aligned_cols=577 Identities=11% Similarity=0.118 Sum_probs=305.2
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEE----EcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS 408 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iw----d~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~ 408 (1084)
..+.|.++.+-+|..-|+.+..+ |.|.+. +..+..... ...-...|.+++||||+..||....
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~---------Gdi~~~~~~~~~~~~~~E~----VG~vd~GI~a~~WSPD~Ella~vT~ 140 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALAS---------GDIILVREDPDPDEDEIEI----VGSVDSGILAASWSPDEELLALVTG 140 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECC---------ceEEEEEccCCCCCceeEE----EEEEcCcEEEEEECCCcCEEEEEeC
Confidence 34689999999999888877655 778777 443332222 2334579999999999999999999
Q ss_pred CCEEEEEEccCCccccceeeeeccc-----ccEeEEEeecCCCcEEEEEEeCCCcE-E-EEECCCC-ceeeEeccCCCcE
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITCGDDKTI-K-VWDAVTG-SRTYSFEGHGAPV 480 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~-----~~V~~l~~s~d~~~l~l~s~~~d~~i-~-vwd~~~g-~~~~~~~~h~~~v 480 (1084)
++++.+..-+ -+.+. +..-+. ..-..+-|-....+ +-|+..+.. + .=|.... .....+. +.+.-
T Consensus 141 ~~~l~~mt~~-fd~i~---E~~l~~~~~~~~~~VsVGWGkKeTQ---F~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~ 212 (928)
T PF04762_consen 141 EGNLLLMTRD-FDPIS---EVPLDSDDFGESKHVSVGWGKKETQ---FHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGR 212 (928)
T ss_pred CCEEEEEecc-ceEEE---EeecCccccCCCceeeeccCcccCc---cCcchhhhhhhhccCCCCCccccCccc-cCCCc
Confidence 9988876422 11111 111110 11112333222211 111110000 0 0110000 0011222 34445
Q ss_pred EEEeecccCCCcEEEEEec---C---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 481 YSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
..++| .+||.++++.+. . ..+|+|+-+ +......+...+--.+++|-|.|+++|+... ..+...|..|.-
T Consensus 213 ~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~-~~~~~~VvFfEr 288 (928)
T PF04762_consen 213 VRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR-LPDRHDVVFFER 288 (928)
T ss_pred eEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE-cCCCcEEEEEec
Confidence 56677 779999998875 3 469999754 3333333333333457899999999998875 233456777764
Q ss_pred CCceEeeeeeccc-cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecC-CCEEE
Q 001403 555 SEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN-GTLLA 630 (1084)
Q Consensus 555 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~-~~~l~ 630 (1084)
+|-.-..|.... .....|..+.|++|+..|+..-.|. |.+|-..+.... +.+..... ..+..+.|+|. ...|.
T Consensus 289 -NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~~~~~~~Wdpe~p~~L~ 365 (928)
T PF04762_consen 289 -NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-ESVNFVKWDPEKPLRLH 365 (928)
T ss_pred -CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-CCCCceEECCCCCCEEE
Confidence 343333333221 1236799999999999999977655 999999887644 33332222 23455999994 55677
Q ss_pred EEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee-
Q 001403 631 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF- 709 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~- 709 (1084)
+.+.+|.+..++..-.. ..++.. .|+..-.+..-+..++.+-.+..
T Consensus 366 v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~vaVIDG~~lllTpf~~a 412 (928)
T PF04762_consen 366 VLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTVAVIDGNKLLLTPFRRA 412 (928)
T ss_pred EEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEEEEEeCCeEEEeccccc
Confidence 77777777766654210 011000 01111111111112233322211
Q ss_pred --ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 710 --ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 710 --~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
+.|.-...+.+ ...|.+++|++++..+++...||.+.+|.+............. ........ ...
T Consensus 413 ~VPPPMs~~~l~~-----~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~-- 479 (928)
T PF04762_consen 413 VVPPPMSSYELEL-----PSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKL-----LSSISLDS-MDI-- 479 (928)
T ss_pred CCCchHhceEEcC-----CCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcch-----hhhccccc-ccc--
Confidence 12222233332 3589999999999999999999999999876543211000000 00000000 000
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEeC----CeEEEEEcCCce---eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeE
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI 860 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~sd----g~i~vwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i 860 (1084)
.........+..++|..+...++.... ..+.+++....+ .........+.+..+...+ +...++.-..+|.+
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~q~~~G~v 558 (928)
T PF04762_consen 480 SDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSP-DSGSLYIQTNDGKV 558 (928)
T ss_pred cccccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCC-CCcEEEEEECCCEE
Confidence 000013456778888888877776653 468888874332 2333333345555555555 44456677789999
Q ss_pred EEEEcCCcee-eeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE
Q 001403 861 LIYNARSSEV-ISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 861 ~iwd~~~~~~-~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
...+...... +..+..-...+ .+....+.. .++.-+..|.+++ .. ..+. ..++++++
T Consensus 559 ~~~~~~~~~~~~~~fp~~c~~~-~~~~~~~~~~~~~~~GLs~~~~Ly~---n~------~~la---------~~~tSF~v 619 (928)
T PF04762_consen 559 FQLSSDGELSQIVKFPQPCPWM-EVCQINGSEDKRVLFGLSSNGRLYA---NS------RLLA---------SNCTSFAV 619 (928)
T ss_pred EEeecCCCccccccCCCCCcEE-EEEEECCccceeEEEEECCCCEEEE---CC------EEEe---------cCCceEEE
Confidence 8776654322 22333222222 222222322 3443344444443 11 0111 14666666
Q ss_pred ccCCCEEE-EEeCCeEEEEEcC-CcceeeEeecCCCCC-EEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 937 HKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 937 s~dg~~la-~~~d~~i~vwd~~-~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
. +.+|+ +.....+++.++. .-+.+......+... -..+.--..|..|+++-....=-|-.++-|.+.
T Consensus 620 ~--~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQmPRGNLE 689 (928)
T PF04762_consen 620 T--DSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQMPRGNLE 689 (928)
T ss_pred E--cCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEEcCCCchh
Confidence 3 44444 4667778888887 222111111111000 001222346888888876666666778877664
No 241
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.48 E-value=8.7e-11 Score=123.04 Aligned_cols=365 Identities=12% Similarity=0.161 Sum_probs=227.1
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
+|...+......+....-++..+++||.|.+|++... ..|.+|....+..+..+.. ..|..+.|+|.+++
T Consensus 16 f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~-----~~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~kY 85 (561)
T COG5354 16 FWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHA-----AGVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEKY 85 (561)
T ss_pred eecCccccccccccccCcchhheeecCcchheehhhc-----cceEEccccchhheeeeec-----CCceecccCcccce
Confidence 4544444444444445668889999999999998764 2399999888776666654 35999999999999
Q ss_pred EEEEECC---------------CcEEEEECCCCeEEEEEcCCCCCCCcc-eEEEecCCCEEEEEECCCeEEEEEcCCC-C
Q 001403 585 ILAAGDD---------------HVIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPES-N 647 (1084)
Q Consensus 585 l~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~dg~i~iwd~~~~-~ 647 (1084)
|.+-+.. ..+.+||..+|.++..+.......... -+.|+-+.+++|-. -...+.|+++... .
T Consensus 86 L~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~t~n~~ 164 (561)
T COG5354 86 LVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEITDNIE 164 (561)
T ss_pred eeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEecCCccc
Confidence 9986543 349999999999999887654432223 67889888877655 3357899986221 1
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
...........+....++|.+... .+..
T Consensus 165 ~~p~~~lr~~gi~dFsisP~~n~~-----------------------------~la~----------------------- 192 (561)
T COG5354 165 EHPFKNLRPVGILDFSISPEGNHD-----------------------------ELAY----------------------- 192 (561)
T ss_pred cCchhhccccceeeEEecCCCCCc-----------------------------eEEE-----------------------
Confidence 110000112233333333321100 0000
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
|.|. ..+..+++++|.++.++. +.+..+ ....-..+.|.+.|.
T Consensus 193 ------~tPE-----k~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 193 ------WTPE-----KLNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ------Eccc-----cCCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCCc
Confidence 1111 012344555555543221 111111 011112345666666
Q ss_pred EEEEE------------eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE--EeCCCeEEEEEcCCceeeee
Q 001403 808 YLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 808 ~l~~~------------sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~--g~~dg~i~iwd~~~~~~~~~ 873 (1084)
++..- +...+.++++..... .......++|...+|.| .++.+++ |-.+-.+-++|++.. +...
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i-~V~~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~~ 312 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSI-PVEKDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRFY 312 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeeccccc-ceeccccccceeeeecc-cCCceeEEecccccceeecccccc-eEEe
Confidence 55432 124588888874333 33325678999999999 5555444 357789999999855 4433
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---- 946 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---- 946 (1084)
+. ...=..+.|||.+++++.++-| |.|-+||....- .++....+. ..+.+.|||||+++-+.
T Consensus 313 ~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf----~~~~~~~~~-----n~s~~~wspd~qF~~~~~ts~ 381 (561)
T COG5354 313 FP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRF----KVAGAFNGL-----NTSYCDWSPDGQFYDTDTTSE 381 (561)
T ss_pred cC--CcccccccccCcccEEEEecCCccccceEEeccCCce----EEEEEeecC-----CceEeeccCCceEEEecCCCc
Confidence 33 3444568899999999998876 679999998732 233333332 35678899999999873
Q ss_pred ---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 947 ---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 947 ---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
.|..+.|||+...... ..+.+.|-|.|++..+.+.+.
T Consensus 382 k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 382 KLRVDNSIKLWDVYGAKVF---------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccccCcceEEEEecCchhh---------hhhhccccCCcccceeeccCC
Confidence 3678999998744322 456778888898888877665
No 242
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.48 E-value=5.5e-10 Score=123.20 Aligned_cols=209 Identities=13% Similarity=0.185 Sum_probs=136.0
Q ss_pred ccEEEecCCCCEEEEEe--CCeEEEEEcCC-ceeEEE---E----------cCCCCCeEEEEEcCCCCcEEEEEe-CCCe
Q 001403 797 VPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDST 859 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~la~g~-~dg~ 859 (1084)
...++++|++++|+++. +|.+.++++.. +..... + ........++.|+| +++++++.. ....
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D~ 167 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGADR 167 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTTE
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCCE
Confidence 44677888888888886 58888888875 333222 1 11235678999999 788777664 3448
Q ss_pred EEEEEcCCce--ee--eeec-ccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCC--CCceeeeeeeecCCCCccCCCCc
Q 001403 860 ILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSE 931 (1084)
Q Consensus 860 i~iwd~~~~~--~~--~~l~-~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v 931 (1084)
|++|++.... +. ..+. ......+.++|+||++++.... .+++|.++++. .+.......+.............
T Consensus 168 v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 247 (345)
T PF10282_consen 168 VYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAP 247 (345)
T ss_dssp EEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSE
T ss_pred EEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCc
Confidence 9999997654 32 2222 2345678999999999886654 57889999998 55444444444332211111257
Q ss_pred eEEEEccCCCEEEEE--eCCeEEEEEcC--Ccce--eeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCC
Q 001403 932 THIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNL 1002 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~--~d~~i~vwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~--~~~ 1002 (1084)
..++++|||++|.++ ..+.|.+|++. +|+. +..+. ........++|+|||++|+++. .++.|.+|++ .+|
T Consensus 248 ~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 248 AEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred eeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 899999999999996 45689999993 3433 22222 1234578999999999999887 4568999876 567
Q ss_pred ceeEE
Q 001403 1003 EVQCR 1007 (1084)
Q Consensus 1003 ~~~~~ 1007 (1084)
.+...
T Consensus 327 ~l~~~ 331 (345)
T PF10282_consen 327 KLTPV 331 (345)
T ss_dssp EEEEE
T ss_pred cEEEe
Confidence 66533
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.48 E-value=2.7e-12 Score=145.86 Aligned_cols=238 Identities=19% Similarity=0.178 Sum_probs=154.8
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEc
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 397 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs 397 (1084)
++.+......+.+..+.+.+.+.+|||||+.||+.+.+ .+. ..|.+||+.++.... +......+.+.+||
T Consensus 179 ~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~--~~~----~~I~~~dl~~g~~~~----l~~~~g~~~~~~~S 248 (427)
T PRK02889 179 QISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFE--SKK----PVVYVHDLATGRRRV----VANFKGSNSAPAWS 248 (427)
T ss_pred EEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEcc--CCC----cEEEEEECCCCCEEE----eecCCCCccceEEC
Confidence 33444455556677777899999999999999987543 221 579999998765432 22234556789999
Q ss_pred CCCCEEEE-EeCCCEEEEEEc--cCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CCCcEEEEE--CCCCceee
Q 001403 398 PDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWD--AVTGSRTY 471 (1084)
Q Consensus 398 pdg~~las-~~~dg~v~iwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d~~i~vwd--~~~g~~~~ 471 (1084)
|||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+. ++..+ .++...+|. +.++.. .
T Consensus 249 PDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~--l~f~s~~~g~~~Iy~~~~~~g~~-~ 321 (427)
T PRK02889 249 PDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS--IYFTSDRGGAPQIYRMPASGGAA-Q 321 (427)
T ss_pred CCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE--EEEEecCCCCcEEEEEECCCCce-E
Confidence 99999885 566777666654 4443 22 34456566678899999994 44333 345666664 445543 2
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
.+..+........| ++||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..+..+ +...
T Consensus 322 ~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~-g~~~ 396 (427)
T PRK02889 322 RVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQG-GRSV 396 (427)
T ss_pred EEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecC-CCEE
Confidence 22222233334567 45778888776654 59999998776543322 22346789999999999887643 3566
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
+++.+. ++.....+..+. +.+...+|+|-
T Consensus 397 l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp~ 425 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQG---GDVREPSWGPF 425 (427)
T ss_pred EEEEEC-CCCceEEeecCC---CCCCCCccCCC
Confidence 777777 455555555444 56667777763
No 244
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.47 E-value=4.2e-12 Score=133.24 Aligned_cols=274 Identities=11% Similarity=0.164 Sum_probs=181.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---cceeeeecCCCCCeEEEEE-----cCCCCEEEEEe
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---LFKTALVRDPGVSVNRVVW-----SPDGSLLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~f-----spdg~~las~~ 407 (1084)
.+....++-.|++|+... | ..+.+|+...... .+.+..+.+ ....|=+| .|+|--|..|-
T Consensus 125 ~~~~~~~~~~gd~lcFnv-----g-----~~lyv~~~~g~~~~~~pi~k~~y~g--t~P~cHdfn~~~a~~~g~dllIGf 192 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNV-----G-----RELYVYSYRGAADLSKPIDKREYKG--TSPTCHDFNSFTATPKGLDLLIGF 192 (636)
T ss_pred ceeeccccCCCCEEEEec-----C-----CeEEEEEccCcchhccchhhhcccC--CCCceecccccccCCCCcceEEee
Confidence 455666677788887732 1 6788998873221 122222322 23334444 45777888898
Q ss_pred CCCEEEEEEccCCccccceeeee--cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 408 SKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
.-|.|.+.|....+..+ +.... -.+..|+|+.|-|.++. .++.+-.+|.+.++|.+ +....+...+
T Consensus 193 ~tGqvq~idp~~~~~sk-lfne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~t~p~~ 260 (636)
T KOG2394|consen 193 TTGQVQLIDPINFEVSK-LFNEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGATAPSY 260 (636)
T ss_pred ccCceEEecchhhHHHH-hhhhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccCCCCcc
Confidence 89999999877633222 11111 12368999999998876 45555668999999862 1111111222
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
..-.++..+.....-+. .+..++..+......|..++|+|||++||+++. ++.++|+|..+.+++..++.
T Consensus 261 ~~~k~~~~f~i~t~ksk------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eLlg~mkS 330 (636)
T KOG2394|consen 261 QALKDGDQFAILTSKSK------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQELLGVMKS 330 (636)
T ss_pred cccCCCCeeEEeeeecc------ccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHHHHHHHh
Confidence 22223323322111000 111233333334458899999999999999986 88899999999988888777
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec---------------------
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK--------------------- 624 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--------------------- 624 (1084)
.- +...|++|+|||++|++|++|.-|.||.+..++.+..-++| ...|..|+|.|
T Consensus 331 YF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~ 405 (636)
T KOG2394|consen 331 YF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDV 405 (636)
T ss_pred hc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeecccccccccccccccccccccch
Confidence 66 78999999999999999999999999999999888876655 44688888872
Q ss_pred --------------CC-------------CEEEEEECCCeEEEEEcCCCCe
Q 001403 625 --------------NG-------------TLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 625 --------------~~-------------~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
++ -.+.+.+.|..+.+||+.....
T Consensus 406 ~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 406 AHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred hcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhc
Confidence 01 2466778899999999987643
No 245
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=9.5e-12 Score=141.45 Aligned_cols=238 Identities=14% Similarity=0.109 Sum_probs=153.9
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.+||....... . +..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|
T Consensus 176 ~~L~~~D~dG~~~~-~---l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~ 247 (427)
T PRK02889 176 YQLQISDADGQNAQ-S---ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAW 247 (427)
T ss_pred cEEEEECCCCCCce-E---eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEE
Confidence 56777776432211 1 33467789999999999999987643 469999999886432 3334455678999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEE--CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECC--CCCceEe
Q 001403 442 SAPCKQISVITCGDDKTIKVWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd--~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~--~~~~~~~ 516 (1084)
+|||+. ++++.+.++...||. +.++. ...+..+........|+ +||+.++..+. +|...+|.++ .+.. ..
T Consensus 248 SPDG~~-la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wS--pDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~ 322 (427)
T PRK02889 248 SPDGRT-LAVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFS--PDGRSIYFTSDRGGAPQIYRMPASGGAA-QR 322 (427)
T ss_pred CCCCCE-EEEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEc--CCCCEEEEEecCCCCcEEEEEECCCCce-EE
Confidence 999994 334566777766664 44444 55666566556667784 46777776554 5667777654 3332 22
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC---c
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---V 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~ 593 (1084)
+..........+|+|||++++..+..+ +...|.+||+.+++....... .......|+||++.|+.++.++ .
T Consensus 323 lt~~g~~~~~~~~SpDG~~Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~ 396 (427)
T PRK02889 323 VTFTGSYNTSPRISPDGKLLAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSV 396 (427)
T ss_pred EecCCCCcCceEECCCCCEEEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEE
Confidence 222233344678999999999876432 345799999998876543322 1235678999999998877544 3
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++.+. ++.....+..+.+ .+...+|+|
T Consensus 397 l~~~~~-~g~~~~~l~~~~g--~~~~p~wsp 424 (427)
T PRK02889 397 LAAVSS-DGRIKQRLSVQGG--DVREPSWGP 424 (427)
T ss_pred EEEEEC-CCCceEEeecCCC--CCCCCccCC
Confidence 555566 4555555543322 356677776
No 246
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.46 E-value=6.8e-12 Score=143.52 Aligned_cols=236 Identities=13% Similarity=0.081 Sum_probs=158.2
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
+.+......+.+..|...+.+.+|||||+.||..+.+ .|. ..|.+||+.++.... +..+...+.+.+|||
T Consensus 186 ~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~--~g~----~~i~~~dl~~g~~~~----l~~~~g~~~~~~~SP 255 (435)
T PRK05137 186 IMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYA--NGR----PRVYLLDLETGQREL----VGNFPGMTFAPRFSP 255 (435)
T ss_pred EECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEec--CCC----CEEEEEECCCCcEEE----eecCCCcccCcEECC
Confidence 3445556667788888899999999999999997543 222 789999998765421 344666788999999
Q ss_pred CCCEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CC--CcEEEEECCCCceeeE
Q 001403 399 DGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD--KTIKVWDAVTGSRTYS 472 (1084)
Q Consensus 399 dg~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d--~~i~vwd~~~g~~~~~ 472 (1084)
||+.|+.. +.++ .|.+||+.+++.. .+..+.+.....+|+|||+. ++..+ .+ ..|.+||+.++.. ..
T Consensus 256 DG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d~~g~~~-~~ 328 (435)
T PRK05137 256 DGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMNADGSNP-RR 328 (435)
T ss_pred CCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEECCCCCe-EE
Confidence 99988754 4444 4777888887542 35566666778999999994 44444 23 3688889776654 34
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC--e
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE--S 547 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~--~ 547 (1084)
+..+...+....|+ ++|+.|+..+.+ ..|.+||++.... ..+.. ...+..+.|+|||+.|+..+...... .
T Consensus 329 lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~ 404 (435)
T PRK05137 329 ISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAP 404 (435)
T ss_pred eecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCce-EeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcc
Confidence 44345556667785 467788776543 2577888765443 22322 23467889999999998876533221 4
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
.++++|+..+.. ..+.. . +.+...+|+|
T Consensus 405 ~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp 432 (435)
T PRK05137 405 KLYTVDLTGRNE-REVPT-P---GDASDPAWSP 432 (435)
T ss_pred eEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence 688889876654 33332 2 3455666765
No 247
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.45 E-value=1.7e-11 Score=129.68 Aligned_cols=299 Identities=13% Similarity=0.073 Sum_probs=201.6
Q ss_pred cccceEEEEEEecCCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEe
Q 001403 724 VKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL 802 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~ 802 (1084)
.+...-+.+..+|||+++++.+. --.|++||+..-.. .+...-....|.-.-+
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSL--------------------------KFERhlDae~V~feiL 102 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSL--------------------------KFERHLDAEVVDFEIL 102 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEccccee--------------------------eeeecccccceeEEEe
Confidence 35566788999999999988776 46788887653211 0111012334444444
Q ss_pred cCCCCEEEEE-eCCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC
Q 001403 803 SKNDAYLFSA-SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 880 (1084)
Q Consensus 803 s~dg~~l~~~-sdg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 880 (1084)
+.|-..++.- .|.+|.+...- |.... .++ ..-..++++.....++. ++....|+-++++.|..+..+....+.
T Consensus 103 sDD~SK~v~L~~DR~IefHak~-G~hy~~RIP---~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~ 177 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKY-GRHYRTRIP---KFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGE 177 (703)
T ss_pred ccchhhheEeecCceeeehhhc-CeeeeeecC---cCCccccccCCCccEEE-eecCcceEEEEcccccccccccccccc
Confidence 5554433333 36666654432 22211 121 12245666553333444 444567999999999999999888899
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeee-ecCCCCcc--CCCCceEEEEccCCCEEEEE-eCCeEEEEEc
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL-QTPDGVMT--LAPSETHIQFHKDQTRFLLV-HETHLAIYEA 956 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~-~~~~~~~~--~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~ 956 (1084)
++++..++-..+|++|+.||.|..||..........-+ .....+.. ....|+++.|+.||-.+++| ++|.+.|||+
T Consensus 178 lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDL 257 (703)
T KOG2321|consen 178 LNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDL 257 (703)
T ss_pred ceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEc
Confidence 99999999999999999999999999987543322111 11111111 12469999999999999996 8999999999
Q ss_pred CCcceeeEeecCCCCCEEEEEEccC--CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 957 EELTCLKQWFPISSVPISQATFSCD--CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~d--g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
.+.+.+..--.+..-+|..+.|-+. +..+++. ....++|||-.+|+....+.+..- +. .+++-| +
T Consensus 258 Ra~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~---------lN--D~C~~p-~ 324 (703)
T KOG2321|consen 258 RASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSD---------LN--DFCFVP-G 324 (703)
T ss_pred ccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCC---------cC--ceeeec-C
Confidence 9888776533333778999999774 4556654 567899999999999988873321 23 466777 5
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCcccCCCCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
+.++++|-.++.+..+=++.-++.=.++++++
T Consensus 325 sGm~f~Ane~~~m~~yyiP~LGPaPrWCSfLd 356 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPSLGPAPRWCSFLD 356 (703)
T ss_pred CceEEEecCCCcceeEEccccCCCchhhhHHH
Confidence 78999999999999888877665434444444
No 248
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.44 E-value=1.2e-10 Score=122.96 Aligned_cols=328 Identities=13% Similarity=0.171 Sum_probs=201.0
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-----------CC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD 591 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----------~d 591 (1084)
.-+-+.|||.|.+|++-... -|.+|--.+-..++.+.. ..|.-+.|||..++|++-+ +.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~-----GI~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~ 281 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQ-----GIALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG 281 (698)
T ss_pred eeeeEEecCCceEEEEEecc-----ceeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence 34678999999999998743 299998777666666653 3588999999999999955 22
Q ss_pred CcEEEEECCCCeEEEEEcCCC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCce
Q 001403 592 HVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV 670 (1084)
Q Consensus 592 g~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~ 670 (1084)
..++|||+.+|...+.+.... ....-.-+.||.|++++|.-.. ..|.||+...-.++..-..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ksl---------------- 344 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSL---------------- 344 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeeccccc----------------
Confidence 579999999999998887532 2223356789999999998776 5788887664322211110
Q ss_pred eeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCce
Q 001403 671 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH 750 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i 750 (1084)
.-..|....|+|.+..|+--.
T Consensus 345 ------------------------------------------------------ki~gIr~FswsP~~~llAYwt----- 365 (698)
T KOG2314|consen 345 ------------------------------------------------------KISGIRDFSWSPTSNLLAYWT----- 365 (698)
T ss_pred ------------------------------------------------------CCccccCcccCCCcceEEEEc-----
Confidence 112344445555543222111
Q ss_pred EEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE
Q 001403 751 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT 830 (1084)
Q Consensus 751 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~ 830 (1084)
+.+.. .. ..+.+..+.+++.+++
T Consensus 366 --------------------------pe~~~-----------~p--------------------arvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 366 --------------------------PETNN-----------IP--------------------ARVTLMEVPSKREIRT 388 (698)
T ss_pred --------------------------ccccC-----------Cc--------------------ceEEEEecCccceeee
Confidence 11110 00 1233333334444333
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEE----------eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeC--
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIG----------MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-- 898 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g----------~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-- 898 (1084)
-.-+.-.=..+-|-. +|.+|+.- +.-..+.|+.+.....--..-.-...|...+|-|.|..+++-+.
T Consensus 389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccc
Confidence 332222222334444 44454432 22224666666554322112224577899999999998886654
Q ss_pred -CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----eCCeEEEEEcCCcceeeEeecCCCCCE
Q 001403 899 -DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVPI 973 (1084)
Q Consensus 899 -dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~~i~vwd~~~~~~~~~~~~~h~~~v 973 (1084)
..++.+|.+++.. .....+..++.. ....+.|||.|++++++ ..|.+.++|+.-..+...-...| ...
T Consensus 468 ~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~a 540 (698)
T KOG2314|consen 468 VKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAA 540 (698)
T ss_pred cccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-ccc
Confidence 3578999988522 122234443331 36789999999999984 46789999998544444323334 356
Q ss_pred EEEEEccCCCEEEEEeCC------CcEEEEEcCC
Q 001403 974 SQATFSCDCRMVFTSFVD------GTLSIHEASN 1001 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~d------g~i~vwd~~~ 1001 (1084)
+.+.|.|.|+|++|+++- .--++|+...
T Consensus 541 t~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 541 TEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 788999999999999864 3355566553
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.43 E-value=8.4e-10 Score=111.98 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=183.4
Q ss_pred cCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC---CceEEeeccCCccCcCcccceecCCeee
Q 001403 699 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
++.|.+|+++......... ........++-++++|+++.|.++..+ |.+..|.+.
T Consensus 15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD------------------- 72 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID------------------- 72 (346)
T ss_pred CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc-------------------
Confidence 4567888877432221111 112255677889999999999888765 566666543
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCC-ceeEEE--EcCCCCC----------eEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS 840 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~ 840 (1084)
..+|.......... ...+...++++++|+++++++ .|.|.++-+.. |..... ...|.+. +..
T Consensus 73 -~~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~ 149 (346)
T COG2706 73 -PDDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS 149 (346)
T ss_pred -CCCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence 33333222222211 233448899999999999998 58999999965 433221 1123333 778
Q ss_pred EEEcCCCCcEEEEEeCC-CeEEEEEcCCceeeeeec---ccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCC--Ccee
Q 001403 841 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ 913 (1084)
Q Consensus 841 l~~s~~d~~~la~g~~d-g~i~iwd~~~~~~~~~l~---~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~--~~~~ 913 (1084)
..+.| ++++|++.+-. -.|.+|++..|++...-. .....-+.|+|+|++++.....+ +++|.+|..+. ++..
T Consensus 150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~ 228 (346)
T COG2706 150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE 228 (346)
T ss_pred eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence 89999 89888877532 369999999876532211 23456788999999998876664 89999999988 4544
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC--CeEEEEEcCC--cce-eeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--THLAIYEAEE--LTC-LKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d--~~i~vwd~~~--~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
....+..+........+...+..++||++|.++.. ..|.++.+.. ++. +......+...-....|+++|++|+++
T Consensus 229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa 308 (346)
T COG2706 229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA 308 (346)
T ss_pred EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence 44444443333333356889999999999999744 4688887753 322 112222334446788999999999998
Q ss_pred eCCC-cEEEEEcC--CCcee
Q 001403 989 FVDG-TLSIHEAS--NLEVQ 1005 (1084)
Q Consensus 989 ~~dg-~i~vwd~~--~~~~~ 1005 (1084)
..++ .|.++..+ +|++.
T Consensus 309 ~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 309 NQKSDNITVFERDKETGRLT 328 (346)
T ss_pred ccCCCcEEEEEEcCCCceEE
Confidence 8764 57887665 44443
No 250
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.42 E-value=6.9e-11 Score=125.53 Aligned_cols=287 Identities=14% Similarity=0.136 Sum_probs=191.9
Q ss_pred CceEEEEcCCCceeee----ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 336 SPMSMDFHPVQHTLLL----GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 336 ~V~~v~~spdg~~las----~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.+.++.|||-|.||.+ +.++..++. ...+.+|++++........ .. .... ++..||+|..+.|-- ..+.
T Consensus 75 ~~~~L~fSP~g~yL~T~e~~~i~~~~~~~---~pn~~v~~vet~~~~s~~q-~k-~Q~~-W~~qfs~dEsl~arl-v~ne 147 (566)
T KOG2315|consen 75 KTYDLLFSPKGNYLLTWEPWAIYGPKNAS---NPNVLVYNVETGVQRSQIQ-KK-MQNG-WVPQFSIDESLAARL-VSNE 147 (566)
T ss_pred eeeeeeecccccccccccccccccCCCCC---CCceeeeeeccceehhhee-hh-hhcC-cccccccchhhhhhh-hcce
Confidence 7899999999999999 444433333 3788999999844333221 11 2222 689999987654433 4556
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE-----EeCCCcEEEEECCCCceeeEe---ccCCCcEEEE
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT-----CGDDKTIKVWDAVTGSRTYSF---EGHGAPVYSL 483 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s-----~~~d~~i~vwd~~~g~~~~~~---~~h~~~v~~~ 483 (1084)
+.+|+..+-+.+. -.-|...|+.+++||.+....+++ .|.-..|+||...-+.....+ .-....-..+
T Consensus 148 v~f~~~~~f~~~~----~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm 223 (566)
T KOG2315|consen 148 VQFYDLGSFKTIQ----HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQM 223 (566)
T ss_pred EEEEecCCcccee----eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEE
Confidence 9999998744332 234677899999999865435554 355668999987632221111 1112223345
Q ss_pred eecccCCCcEEEE-EecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 484 CPHAKENIHFIFS-ISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 484 ~~~~~~~~~~l~s-~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.|...+.+-++++ ...| .++++.+++..... .--...++|.++.|+|+|+.++++..- .-..+.++|
T Consensus 224 ~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~-V~L~k~GPVhdv~W~~s~~EF~VvyGf--MPAkvtifn 300 (566)
T KOG2315|consen 224 KWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS-VPLLKEGPVHDVTWSPSGREFAVVYGF--MPAKVTIFN 300 (566)
T ss_pred EeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE-EecCCCCCceEEEECCCCCEEEEEEec--ccceEEEEc
Confidence 6655444433322 2233 35777776632222 233346799999999999998887643 244588999
Q ss_pred CCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEE
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 630 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~ 630 (1084)
++ +..+..+.. ++-+++-|+|.|++++.+| -.|.|-|||+.+.+++..+.... ..-+.|+|||++++
T Consensus 301 lr-~~~v~df~e-----gpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~----tt~~eW~PdGe~fl 370 (566)
T KOG2315|consen 301 LR-GKPVFDFPE-----GPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN----TTVFEWSPDGEYFL 370 (566)
T ss_pred CC-CCEeEeCCC-----CCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC----ceEEEEcCCCcEEE
Confidence 76 455444432 5678899999999999877 45899999999998888887543 35689999999999
Q ss_pred EEEC------CCeEEEEEcCCC
Q 001403 631 VIAN------ENRIKILETPES 646 (1084)
Q Consensus 631 ~~~~------dg~i~iwd~~~~ 646 (1084)
+++. |+.++||+....
T Consensus 371 TATTaPRlrvdNg~KiwhytG~ 392 (566)
T KOG2315|consen 371 TATTAPRLRVDNGIKIWHYTGS 392 (566)
T ss_pred EEeccccEEecCCeEEEEecCc
Confidence 9876 688999998754
No 251
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.42 E-value=2.4e-11 Score=123.05 Aligned_cols=224 Identities=13% Similarity=0.167 Sum_probs=168.6
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCC--CcEEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWD 463 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d--~~i~vwd 463 (1084)
.+.+|..++.. ...|++|-.+|.+.+|..+.+..- .....+..+ ..+..+.-++.... ++++||.. ..+.|||
T Consensus 104 ~~~~I~gl~~~--dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwd 179 (412)
T KOG3881|consen 104 GTKSIKGLKLA--DGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWD 179 (412)
T ss_pred ccccccchhhc--CCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeee
Confidence 44556555554 346788889999999999855311 111123333 45777777777665 67779988 8899999
Q ss_pred CCCCceeeEeccCC---------CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEEEEcCCC
Q 001403 464 AVTGSRTYSFEGHG---------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANG 533 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~---------~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~d~ 533 (1084)
++..+.+.+-+.-. -.++++.|.+..+...+++++.-+.+++||...+. +...+.....+++++...|+|
T Consensus 180 le~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~g 259 (412)
T KOG3881|consen 180 LEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSG 259 (412)
T ss_pred cccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCC
Confidence 99886655443211 23456677655446899999999999999998654 456777788899999999999
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeee-eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
++++++.. .+.+..+|.++++.... +.+.. +.++++..+|.++++++++-|+.+||+|+.+.+++...-...
T Consensus 260 n~Iy~gn~----~g~l~~FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs 332 (412)
T KOG3881|consen 260 NFIYTGNT----KGQLAKFDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS 332 (412)
T ss_pred cEEEEecc----cchhheecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc
Confidence 99999865 56699999999998877 77777 899999999999999999999999999999977776655443
Q ss_pred CCCCcceEEEec
Q 001403 613 GLPENPRICFNK 624 (1084)
Q Consensus 613 ~~~~v~~v~~s~ 624 (1084)
. .+++.+.+
T Consensus 333 ~---lt~il~~~ 341 (412)
T KOG3881|consen 333 R---LTFILLRD 341 (412)
T ss_pred c---ccEEEecC
Confidence 3 45555544
No 252
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.41 E-value=3.1e-09 Score=113.26 Aligned_cols=205 Identities=11% Similarity=0.088 Sum_probs=131.0
Q ss_pred cEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee-e
Q 001403 798 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI-S 872 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~-~ 872 (1084)
..++++|||+++.+.. +..+.+.|+.+++.+.++.-.. ...-...+. +. .. +.+.||......+.+ |+.. .
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3578899999888775 5789999999999998887533 222222322 22 11 223344444333322 2211 1
Q ss_pred ---eecccccCEE-EEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc----cCCCCceEEEEccCCCEE
Q 001403 873 ---KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 873 ---~l~~h~~~V~-~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~l 943 (1084)
.+.+-..++. .-.|++ ||+++..... |+|.+-|+.................. -..+...-+++++|++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111000000 014556 8888876666 99999998765433333333221110 011345569999999998
Q ss_pred EEEe---C--------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEec
Q 001403 944 LLVH---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 944 a~~~---d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.+.. . +.|.++|..+++.+..+..+ ..+..++|||||+ +|++.. .++.|.+.|+.+++.+.++.
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 8832 1 57999999999999987765 4889999999999 877666 57889999999999998874
No 253
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=7.4e-11 Score=124.39 Aligned_cols=326 Identities=9% Similarity=0.105 Sum_probs=201.4
Q ss_pred CCCCCCcchhhhcccccCCCccCCCc--cceeeecccCCCCceEEEEcCCCceeeeecccccC---ccccccceEEEEEc
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFP--KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNS---GQKLFIRNFKVWDI 372 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p--~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~s---g~~~~~~~v~iwd~ 372 (1084)
.-|||.++++....+.-.. ++.=+ ..+.+. .|. .|..+.|||+.+||++=+....+ +++ ....++|||+
T Consensus 216 v~wSP~GTYL~t~Hk~GI~--lWGG~~f~r~~RF--~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~-e~~~l~IWDI 289 (698)
T KOG2314|consen 216 VRWSPKGTYLVTFHKQGIA--LWGGESFDRIQRF--YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDN-EGQQLIIWDI 289 (698)
T ss_pred EEecCCceEEEEEecccee--eecCccHHHHHhc--cCC-CceeeecCCccceEEEecCCccccCcccC-CCceEEEEEc
Confidence 4688888887555332100 01111 111111 344 89999999999999992221111 011 1278999999
Q ss_pred CCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE
Q 001403 373 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 373 ~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s 452 (1084)
.++.......++.+....-.-+.||.|++|+|--..++ |.||+..+-..+... . -.-..|....|+|.+. +||-
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~s-isIyEtpsf~lld~K-s--lki~gIr~FswsP~~~--llAY 363 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNS-ISIYETPSFMLLDKK-S--LKISGIRDFSWSPTSN--LLAY 363 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccce-EEEEecCceeeeccc-c--cCCccccCcccCCCcc--eEEE
Confidence 99877655544444333334578999999999887765 999998763322110 1 1234688899999988 5553
Q ss_pred EeC-----CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------cCCeEEEEECCCCCceEee
Q 001403 453 CGD-----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 453 ~~~-----d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~~ 517 (1084)
-.. -..+.+-.+.+++.+++-.-|. |..+.++...+|.+|+.-- .-..+.|+.++........
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfn--VsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ 441 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFN--VSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEV 441 (698)
T ss_pred EcccccCCcceEEEEecCccceeeecccee--eeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCcee
Confidence 221 1246667777777776655444 4444555566777776531 1113555655554443333
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-c---eEeeeeeccccccCceEEEEEcCCCCEEEEE---EC
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-G---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA---GD 590 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~---~~ 590 (1084)
..-...|...+|-|.|..+++.+... ...++..|.+++ . +.+..+.. ...+.+.|+|.|++++.+ |.
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~-~k~tvsfY~~e~~~~~~~lVk~~dk-----~~~N~vfwsPkG~fvvva~l~s~ 515 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNT-VKNTVSFYAVETNIKKPSLVKELDK-----KFANTVFWSPKGRFVVVAALVSR 515 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccc-cccceeEEEeecCCCchhhhhhhcc-----cccceEEEcCCCcEEEEEEeccc
Confidence 33445788999999999988776533 366788887763 2 22233322 457889999999999885 46
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC------CCeEEEEEcCC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPE 645 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i~iwd~~~ 645 (1084)
.|.+.++|+.......+-. ..+ ...+.+.|.|.|+++++++. |..-++|+...
T Consensus 516 ~g~l~F~D~~~a~~k~~~~-~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 516 RGDLEFYDTDYADLKDTAS-PEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred ccceEEEecchhhhhhccC-ccc-cccccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 7999999987533222211 122 23577999999999999876 44456666653
No 254
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.38 E-value=4.6e-11 Score=118.60 Aligned_cols=155 Identities=12% Similarity=0.190 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcEEEEEeC----------CCeEEEEEcCC-ceeeeeecc-cccCEEEEEEcCCCCEEEEE--eCCCcEEE
Q 001403 839 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV 904 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~----------dg~i~iwd~~~-~~~~~~l~~-h~~~V~~l~~spd~~~l~s~--s~dg~I~i 904 (1084)
..+.|+| .|.+|++-.. -|...+|.++. +..+..+.- ..++|.+++|+|+|+.+|.. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 4678888 6665554332 13455555532 233444432 34579999999999987654 35679999
Q ss_pred EeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc
Q 001403 905 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC 980 (1084)
Q Consensus 905 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~ 980 (1084)
||++. + .+..... ..+..+.|||+|++|++++ .|.|.+||+.+.+.+.... ...++.++|||
T Consensus 88 yd~~~-~-----~i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-K-----KIFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE---HSDATDVEWSP 153 (194)
T ss_pred EcCcc-c-----EeEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc---cCcEEEEEEcC
Confidence 99973 1 1222221 1467899999999999952 4679999999888877632 34578999999
Q ss_pred CCCEEEEEeC------CCcEEEEEcCCCceeEEec
Q 001403 981 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 981 dg~~l~t~~~------dg~i~vwd~~~~~~~~~~~ 1009 (1084)
||+++++++. |+.++||+.. |+++.+..
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999999875 7889999985 66665443
No 255
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.37 E-value=3.6e-09 Score=116.77 Aligned_cols=269 Identities=14% Similarity=0.223 Sum_probs=172.2
Q ss_pred ceEEEEEcC--CccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC----CCEEEEEEccCC-ccccceeeeecccccEe
Q 001403 365 RNFKVWDIG--ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----KHIVQLYAYHGG-SDARQQLEIDAHVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~--~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~----dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~ 437 (1084)
+.|.+|++. ++....... .........++++|++++|.+... ++.|..|++... ..+..+...........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~--~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~ 90 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQT--VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPC 90 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEE--EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEE
T ss_pred CcEEEEEEcCCCCCceEeee--ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcE
Confidence 677888773 333222221 113356777999999999999876 568999998874 33333333333344567
Q ss_pred EEEeecCCCcEEEEEEe-CCCcEEEEECCC-CceeeE---ec----------cCCCcEEEEeecccCCCcEEEEEec-CC
Q 001403 438 DLAFSAPCKQISVITCG-DDKTIKVWDAVT-GSRTYS---FE----------GHGAPVYSLCPHAKENIHFIFSISV-DG 501 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~-~d~~i~vwd~~~-g~~~~~---~~----------~h~~~v~~~~~~~~~~~~~l~s~s~-dg 501 (1084)
.++++|+++ +++++. .+|+|.++++.. |..... +. .......++.++ ++++++++... ..
T Consensus 91 ~i~~~~~g~--~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~--pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 91 HIAVDPDGR--FLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFS--PDGRFVYVPDLGAD 166 (345)
T ss_dssp EEEECTTSS--EEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE---TTSSEEEEEETTTT
T ss_pred EEEEecCCC--EEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEEC--CCCCEEEEEecCCC
Confidence 899999999 455544 589999999986 443322 11 122446777884 46677766543 45
Q ss_pred eEEEEECCCCCceE----e-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--CceE--eeeeecc---ccc
Q 001403 502 KIKAWLYDSLGARV----D-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAI--KRTYQGL---QLQ 569 (1084)
Q Consensus 502 ~i~iwd~~~~~~~~----~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~--~~~~~~~---~~~ 569 (1084)
.|.+|+++...... . ....+.....++|+|+++++++... ..+.|.++++. ++.. +...... ...
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~ 243 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTG 243 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESCETTSCS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---CCCcEEEEeecccCCceeEEEEeeeccccccc
Confidence 79999998766211 1 2344557889999999999988764 36668888877 4432 2222221 111
Q ss_pred cCceEEEEEcCCCCEEEEEE-CCCcEEEEECC--CCeE--EEEEcCCCCCCCcceEEEecCCCEEEEEEC-CCeEEEEEc
Q 001403 570 HNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN--KVQL--LTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILET 643 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~--~~~~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~ 643 (1084)
......++++||+++|+++. ..+.|.+|++. ++.+ +..+...+. ....++++|+|++|+++.. ++.|.+|++
T Consensus 244 ~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~ 321 (345)
T PF10282_consen 244 ENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGK--FPRHFAFSPDGRYLYVANQDSNTVSVFDI 321 (345)
T ss_dssp SSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSS--SEEEEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred cCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCC--CccEEEEeCCCCEEEEEecCCCeEEEEEE
Confidence 12578899999999988865 66789999983 3433 334443222 3578999999999998875 678999977
Q ss_pred C
Q 001403 644 P 644 (1084)
Q Consensus 644 ~ 644 (1084)
.
T Consensus 322 d 322 (345)
T PF10282_consen 322 D 322 (345)
T ss_dssp E
T ss_pred e
Confidence 4
No 256
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.37 E-value=1e-10 Score=132.03 Aligned_cols=244 Identities=10% Similarity=0.026 Sum_probs=149.7
Q ss_pred cCCCccceeeecccCCCCceEEEEcCCCceeee--ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEE
Q 001403 319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLL--GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las--~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f 396 (1084)
+.+......+.|..+...+..-+|||||+.++. .+.. .|. ..|.+.++.++..... ....+.....+|
T Consensus 169 ~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~--~g~----~~I~~~~l~~g~~~~l----t~~~g~~~~p~w 238 (428)
T PRK01029 169 SVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYK--LGV----PKIFLGSLENPAGKKI----LALQGNQLMPTF 238 (428)
T ss_pred EEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEcc--CCC----ceEEEEECCCCCceEe----ecCCCCccceEE
Confidence 344444445556666667788999999986432 2221 232 6788888877654322 223445567899
Q ss_pred cCCCCEEEEEeC-----CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEE-eCCCcEEEE--ECCC-C
Q 001403 397 SPDGSLLGVAYS-----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-GDDKTIKVW--DAVT-G 467 (1084)
Q Consensus 397 spdg~~las~~~-----dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~-~~d~~i~vw--d~~~-g 467 (1084)
||||+.||..+. +-.+.+|++.++..-.......++.+.....+|+|||+. |+.. ..++...+| ++.. +
T Consensus 239 SPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~--Laf~s~~~g~~~ly~~~~~~~g 316 (428)
T PRK01029 239 SPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR--LVFVSNKDGRPRIYIMQIDPEG 316 (428)
T ss_pred CCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE--EEEEECCCCCceEEEEECcccc
Confidence 999999998753 223455777653211111112223344567899999994 4433 345655555 4432 3
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++..... .....+....|+|||+.|+..... .
T Consensus 317 ~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt-~~~~~~~~p~wSpDG~~L~f~~~~-~ 392 (428)
T PRK01029 317 QSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLT-TSPENKESPSWAIDSLHLVYSAGN-S 392 (428)
T ss_pred cceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEcc-CCCCCccceEECCCCCEEEEEECC-C
Confidence 33455555555666778854 67777766543 36899999877654433 223456778999999998876543 3
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
+...|+++|+.+++....... . +.+...+|+|-.
T Consensus 393 g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~~ 426 (428)
T PRK01029 393 NESELYLISLITKKTRKIVIG-S---GEKRFPSWGAFP 426 (428)
T ss_pred CCceEEEEECCCCCEEEeecC-C---CcccCceecCCC
Confidence 466799999988776554432 2 456667787743
No 257
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.36 E-value=7.1e-11 Score=117.49 Aligned_cols=342 Identities=14% Similarity=0.203 Sum_probs=215.7
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE-CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd-~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
.++.++|+. +.++....-|-..-+++.+.|.+++||- .+.++.-..+.. .....+.++.+.++...|++|-..|+
T Consensus 16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngt 91 (404)
T KOG1409|consen 16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGT 91 (404)
T ss_pred hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecce
Confidence 455677777 7788888888888999999999999994 444554444332 22345789999999999999999998
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
+.-+.....- + +. ..+|.|
T Consensus 92 vtefs~sedf-----------------n-------------------------km-------~~~r~~------------ 110 (404)
T KOG1409|consen 92 VTEFALSEDF-----------------N-------------------------KM-------TFLKDY------------ 110 (404)
T ss_pred EEEEEhhhhh-----------------h-------------------------hc-------chhhhh------------
Confidence 8776554210 0 00 001111
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
..|...+..+.|+.....+++.+.|..+. |-... .+..+-... .....
T Consensus 111 -----~~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e---------------------~~~~lg~Y~-----~~~~~ 158 (404)
T KOG1409|consen 111 -----LAHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTE---------------------SGNRLGGYN-----FETPA 158 (404)
T ss_pred -----hhhhcceeeEEecCCceeEEEeccccceE-EEeec---------------------cCCcccceE-----eeccC
Confidence 12677888888888888888888875443 22111 111000000 00111
Q ss_pred cEEEecCCCCEEEEEe-CCeEEEEEc--CCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee-eee
Q 001403 798 PCFALSKNDAYLFSAS-GGVISLYIV--MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISK 873 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s-dg~i~vwd~--~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~-~~~ 873 (1084)
+++.+.-. +...|. .|.|.+-.+ +....+.++.+|.+.+++++|.+ ..++|.+|..|..+.+||+.-.+- ...
T Consensus 159 t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~e 235 (404)
T KOG1409|consen 159 SALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYE 235 (404)
T ss_pred CCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeee
Confidence 11111111 333333 355444433 45677889999999999999999 889999999999999999986543 467
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee-----eecC--------------------CCCc-cC
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS-----LQTP--------------------DGVM-TL 927 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~-----~~~~--------------------~~~~-~~ 927 (1084)
+.+|.+.|..+...+--+.|.+++.||.|.+|+.+........- .+.. ..|- .-
T Consensus 236 l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkc 315 (404)
T KOG1409|consen 236 LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKC 315 (404)
T ss_pred eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 88999999999999888999999999999999998643222100 0000 0000 00
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc-------eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELT-------CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-------~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
...+...+-|.-..+...+.+-.+++.|.-... .+..+-.. ...|+.+.+-.+-.+|+|++.|..|+|||+.
T Consensus 316 g~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~~ 394 (404)
T KOG1409|consen 316 GKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDVR 394 (404)
T ss_pred hhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEech
Confidence 011222222222333333555566666542211 12221111 4578899998888899999999999999987
Q ss_pred C
Q 001403 1001 N 1001 (1084)
Q Consensus 1001 ~ 1001 (1084)
.
T Consensus 395 ~ 395 (404)
T KOG1409|consen 395 S 395 (404)
T ss_pred h
Confidence 5
No 258
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.36 E-value=4.3e-09 Score=106.95 Aligned_cols=255 Identities=13% Similarity=0.200 Sum_probs=174.4
Q ss_pred CCCCccEEEecCCCCEEEEEe----CCeEEEEEcCC--ceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY 863 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~i~iw 863 (1084)
....++-++++|+++.|.++. .|.|..|.++. |+.. ........+.+.+++++ ++++|+++.. .|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 567788999999999998875 36788887764 4432 22222334448999999 8989888875 5799999
Q ss_pred EcCC-ceee--eeecccccC----------EEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 864 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 864 d~~~-~~~~--~~l~~h~~~----------V~~l~~spd~~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
-+.. |.+. .....|.+. +-...|.|++++|++.+ .|+ |.+|+++.|............|
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G----- 190 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG----- 190 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence 9865 4332 122235554 88899999999999874 455 9999999877555443333222
Q ss_pred CCceEEEEccCCCEEEEE--eCCeEEEEEcCCc-ceeeEeec------C--CCCCEEEEEEccCCCEEEEEeC-CCcEEE
Q 001403 929 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWFP------I--SSVPISQATFSCDCRMVFTSFV-DGTLSI 996 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~-~~~~~~~~------~--h~~~v~~l~fs~dg~~l~t~~~-dg~i~v 996 (1084)
.....+.|+|++++..+. -+++|.+|..... ..+..+.. . -.....+|..++||++|.++.. ...|.+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 357899999999998874 5789999998863 22222111 1 1567788999999999997643 236777
Q ss_pred EEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC-cEEEEcCCCCCCCccc
Q 001403 997 HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDTWAV 1061 (1084)
Q Consensus 997 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-~v~vw~~~~~~~~~~~ 1061 (1084)
+.+....-.-.+. .+.+ ....+|..+.++| +|++|+++..++ +|.++.+...-++...
T Consensus 271 f~V~~~~g~L~~~--~~~~----teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 271 FSVDPDGGKLELV--GITP----TEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EEEcCCCCEEEEE--EEec----cCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 7776542221121 1111 1235677788998 478888877765 7999999887765543
No 259
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.36 E-value=3.1e-10 Score=128.19 Aligned_cols=243 Identities=12% Similarity=0.085 Sum_probs=150.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE---EEeCC--CEEEEEEccCCccccceeeeecccccEeEE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDL 439 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la---s~~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l 439 (1084)
..|.+.|........ +......+..-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....
T Consensus 165 ~~l~~~d~dG~~~~~----lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p 236 (428)
T PRK01029 165 GELWSVDYDGQNLRP----LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMP 236 (428)
T ss_pred ceEEEEcCCCCCceE----cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccce
Confidence 567777766543321 233455677889999998633 33333 358888988876432 33344556678
Q ss_pred EeecCCCcEEEEEEeC----CCcEEEEECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEEC--C
Q 001403 440 AFSAPCKQISVITCGD----DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--D 509 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~----d~~i~vwd~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~--~ 509 (1084)
+|||||+.+ +++... +-.+.+|++.++ .......++.......+| ++||+.|+..+ .+|...+|.+ +
T Consensus 237 ~wSPDG~~L-af~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~ 313 (428)
T PRK01029 237 TFSPRKKLL-AFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQID 313 (428)
T ss_pred EECCCCCEE-EEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECc
Confidence 999999953 233322 323455777653 322222233334456677 45777776655 5676566644 3
Q ss_pred C-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 510 S-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 510 ~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
. +.....+......+....|+|||+.|+..+.. .+...|++||+.+++....... . ..+....|+|||+.|+..
T Consensus 314 ~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~ 388 (428)
T PRK01029 314 PEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYS 388 (428)
T ss_pred ccccceEEeccCCCCccceeECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEE
Confidence 2 22233344444566788999999999987643 3456799999998877544332 2 346678999999988865
Q ss_pred EC---CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 589 GD---DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 589 ~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+. ...|+++|+.+++........+ .+...+|+|-.
T Consensus 389 ~~~~g~~~L~~vdl~~g~~~~Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 389 AGNSNESELYLISLITKKTRKIVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred ECCCCCceEEEEECCCCCEEEeecCCC---cccCceecCCC
Confidence 43 3578899998887655554322 25567888743
No 260
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.36 E-value=1.8e-10 Score=114.56 Aligned_cols=356 Identities=14% Similarity=0.206 Sum_probs=213.8
Q ss_pred cccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-----eeeEeccCC------------CcEEEEeecccCCCcEEE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-----~~~~~~~h~------------~~v~~~~~~~~~~~~~l~ 495 (1084)
..-|.++.|...|. +|++|..+|.|.++.-+... ....++.|. ..|..+.|....+...++
T Consensus 25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL 102 (433)
T KOG1354|consen 25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL 102 (433)
T ss_pred hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence 35688999999999 89999999999999744222 223444454 357778888888888888
Q ss_pred EEecCCeEEEEECCCCCceEe-----ecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-cc
Q 001403 496 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GL 566 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~ 566 (1084)
....|.+|++|.+........ .......++++.. .+-...+. ..+.+.+. .|
T Consensus 103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aNaH 163 (433)
T KOG1354|consen 103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYANAH 163 (433)
T ss_pred EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccccc
Confidence 899999999998875443331 1111122222221 11111111 11222332 23
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCC-----CCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
. ..|.++.++.|...++++ +|=.|.+|+++-- +....+..... ...|++..|+| ..+.++..+..|+|+
T Consensus 164 t---yhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIr 239 (433)
T KOG1354|consen 164 T---YHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIR 239 (433)
T ss_pred e---eEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEE
Confidence 3 779999999999888876 4678999998642 22222221111 12367788999 456778888899999
Q ss_pred EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec
Q 001403 640 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 719 (1084)
Q Consensus 640 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 719 (1084)
+.|+......... -+++...
T Consensus 240 LcDmR~~aLCd~h-------------------------------------------------sKlfEep----------- 259 (433)
T KOG1354|consen 240 LCDMRQSALCDAH-------------------------------------------------SKLFEEP----------- 259 (433)
T ss_pred Eeechhhhhhcch-------------------------------------------------hhhhccc-----------
Confidence 9998854221110 0011000
Q ss_pred cCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 720 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 720 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
. .|..+. ... +--..|..
T Consensus 260 --e------------dp~~rs------------------------------------------ffs------eiIsSISD 277 (433)
T KOG1354|consen 260 --E------------DPSSRS------------------------------------------FFS------EIISSISD 277 (433)
T ss_pred --c------------CCcchh------------------------------------------hHH------HHhhhhhc
Confidence 0 000000 000 12345778
Q ss_pred EEecCCCCEEEEEeCCeEEEEEc-CCceeEEEEcCCC------------CC---eEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 800 FALSKNDAYLFSASGGVISLYIV-MTFKTILTIMPPS------------PT---ATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~-~~~~~~~~~~~~~------------~~---i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
+.|+++|+|+++-+--+|++||+ ...+++.+++-|. .. -..++|+. ++.++++|+....+++|
T Consensus 278 vKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf 356 (433)
T KOG1354|consen 278 VKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVF 356 (433)
T ss_pred eEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEe
Confidence 89999999999888889999998 4556666655443 12 25678988 78899999999999999
Q ss_pred EcCCceee-eeecccccC--EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 864 NARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 864 d~~~~~~~-~~l~~h~~~--V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
++..|... .++...... ...+ ..-+.+.+++......+|-.. .+-. ..+...+|.|..
T Consensus 357 ~~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ldf~----kkilh~aWhp~e 417 (433)
T KOG1354|consen 357 NLARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LDFR----KKILHTAWHPKE 417 (433)
T ss_pred cCCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hhhh----hHHHhhccCCcc
Confidence 98766432 333322211 1111 112334444444332221100 0000 136778999999
Q ss_pred CEEEEEeCCeEEEEE
Q 001403 941 TRFLLVHETHLAIYE 955 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd 955 (1084)
..+|++.-+.++++.
T Consensus 418 n~ia~aatnnlyif~ 432 (433)
T KOG1354|consen 418 NSIAVAATNNLYIFQ 432 (433)
T ss_pred ceeeeeecCceEEec
Confidence 999998877787763
No 261
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.34 E-value=3.9e-09 Score=112.47 Aligned_cols=281 Identities=11% Similarity=0.067 Sum_probs=178.9
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeEEEEEcCCCC---
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--- 613 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--- 613 (1084)
+.|.+.|..+++.+..+..-. . ...+ ++||++.++++.. +..|.+||..+++.+..+.....
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~---~-P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~ 101 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGF---L-PNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRF 101 (352)
T ss_pred ceEEEEECCCCEEEEEEEccC---C-Ccee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchh
Confidence 669999999999988887644 2 2334 9999999988654 78999999999999999876433
Q ss_pred --CCCcceEEEecCCCEEEEEE-C-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCC
Q 001403 614 --LPENPRICFNKNGTLLAVIA-N-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED 689 (1084)
Q Consensus 614 --~~~v~~v~~s~~~~~l~~~~-~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~ 689 (1084)
......++++|||+++++.. . ++.+.+.|+.+++.+..+.. |.+..+...+......+ +.|
T Consensus 102 ~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~v-----------p~~~~vy~t~e~~~~~~----~~D 166 (352)
T TIGR02658 102 LVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDV-----------PDCYHIFPTANDTFFMH----CRD 166 (352)
T ss_pred hccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeC-----------CCCcEEEEecCCccEEE----eec
Confidence 12234789999999998776 3 68999999999988876654 22233322222222222 234
Q ss_pred CCccc-eecccCccccccceeecCccceeeccCCccccceEEEEEEec-CCCeEEEeecCCceEEeeccCCccCcCcccc
Q 001403 690 VKPEI-SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEAT 767 (1084)
Q Consensus 690 ~~~l~-~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~ 767 (1084)
|.++. +-+.+|+...-....-..... +. ...+ .|++ +|+++.++.. |.+.+-|+......
T Consensus 167 g~~~~v~~d~~g~~~~~~~~vf~~~~~-----~v--~~rP----~~~~~dg~~~~vs~e-G~V~~id~~~~~~~------ 228 (352)
T TIGR02658 167 GSLAKVGYGTKGNPKIKPTEVFHPEDE-----YL--INHP----AYSNKSGRLVWPTYT-GKIFQIDLSSGDAK------ 228 (352)
T ss_pred CceEEEEecCCCceEEeeeeeecCCcc-----cc--ccCC----ceEcCCCcEEEEecC-CeEEEEecCCCcce------
Confidence 44332 223333322111000000000 00 0111 4466 7877777766 99999886543210
Q ss_pred eecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCeEEEEEcCCceeEEEEcCCCC
Q 001403 768 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGVISLYIVMTFKTILTIMPPSP 836 (1084)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~ 836 (1084)
....|...+-.... ..-......-++++++++.+.+.. .+.|.++|..+++.+..+.. ..
T Consensus 229 ---~~~~~~~~~~~~~~-----~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v-G~ 299 (352)
T TIGR02658 229 ---FLPAIEAFTEAEKA-----DGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL-GH 299 (352)
T ss_pred ---ecceeeeccccccc-----cccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC-CC
Confidence 11222221111000 000233344599999999888742 25799999999999998874 45
Q ss_pred CeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeeec
Q 001403 837 TATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 837 ~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l~ 875 (1084)
.+..++++| |++ +|++.. .++.|.++|..+++.+..+.
T Consensus 300 ~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 300 EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 789999999 777 777665 57889999999999988873
No 262
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.33 E-value=1e-10 Score=116.10 Aligned_cols=158 Identities=18% Similarity=0.397 Sum_probs=111.3
Q ss_pred eEEEEcCCCceeeeecc-cc-cCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe--CCCEEE
Q 001403 338 MSMDFHPVQHTLLLGLW-DV-NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--SKHIVQ 413 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~-d~-~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~--~dg~v~ 413 (1084)
..+.|+|+|.+|+.-.. +. .+++. .-+...||.+...........+ ...++|.+++|+|+|+.+|+.. .++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks-~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKS-YYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcce-EEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 46889999999998443 21 23332 2366778877544333322112 2345799999999999987764 567899
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---CCcEEEEECCCCceeeEeccCCCcEEEEeecccCC
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~---d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~ 490 (1084)
+||++ ++.+. .+ +...+..+.|||+|+ ++++++. .|.|.+||+++.+.+.+.. |. .+..++| +++
T Consensus 87 lyd~~-~~~i~---~~--~~~~~n~i~wsP~G~--~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~~-~~t~~~W--sPd 154 (194)
T PF08662_consen 87 LYDVK-GKKIF---SF--GTQPRNTISWSPDGR--FLVLAGFGNLNGDLEFWDVRKKKKISTFE-HS-DATDVEW--SPD 154 (194)
T ss_pred EEcCc-ccEeE---ee--cCCCceEEEECCCCC--EEEEEEccCCCcEEEEEECCCCEEeeccc-cC-cEEEEEE--cCC
Confidence 99997 33222 33 356788999999999 6777654 4679999999988887775 33 3678888 557
Q ss_pred CcEEEEEec------CCeEEEEECC
Q 001403 491 IHFIFSISV------DGKIKAWLYD 509 (1084)
Q Consensus 491 ~~~l~s~s~------dg~i~iwd~~ 509 (1084)
|++++++.. |..++||++.
T Consensus 155 Gr~~~ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 155 GRYLATATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred CCEEEEEEeccceeccccEEEEEec
Confidence 889998864 6778889875
No 263
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.33 E-value=1.8e-09 Score=124.19 Aligned_cols=215 Identities=15% Similarity=0.134 Sum_probs=143.4
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC---CcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD---KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d---~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|.++|..++. .+ .+..+...+...+|+|||+ .++.+..+ ..|.+||+.+++... +..+...+.+++|++
T Consensus 171 ~l~~~d~~g~~-~~---~l~~~~~~~~~p~~Spdg~--~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~~~~~~~sp 243 (417)
T TIGR02800 171 ELQVADYDGAN-PQ---TITRSREPILSPAWSPDGQ--KLAYVSFESGKPEIYVQDLATGQREK-VASFPGMNGAPAFSP 243 (417)
T ss_pred eEEEEcCCCCC-CE---EeecCCCceecccCCCCCC--EEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCCccceEECC
Confidence 58888886543 22 4556777799999999999 45544432 479999999886543 334555666778854
Q ss_pred cCCCcEEE-EEecCC--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 488 KENIHFIF-SISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 488 ~~~~~~l~-s~s~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
||+.|+ +.+.++ .|.+|++.++.... +..+........|+|||+.|+..+. ..+...|+++|+.+++... +.
T Consensus 244 --Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~-~~g~~~iy~~d~~~~~~~~-l~ 318 (417)
T TIGR02800 244 --DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSD-RGGSPQIYMMDADGGEVRR-LT 318 (417)
T ss_pred --CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-ee
Confidence 666554 555554 48888887654432 3333334456789999999987763 2335579999988776543 33
Q ss_pred ccccccCceEEEEEcCCCCEEEEEECCC---cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC---eE
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---RI 638 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg---~i 638 (1084)
.+. .......|+|++++++.++.++ .|.+||+.++.... +.... ......|+|||+.|+..+.++ .+
T Consensus 319 ~~~---~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l 391 (417)
T TIGR02800 319 FRG---GYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTG---LDESPSFAPNGRMILYATTRGGRGVL 391 (417)
T ss_pred cCC---CCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCC---CCCCceECCCCCEEEEEEeCCCcEEE
Confidence 222 4567788999999999988765 78999998865433 32221 234568999999988877754 34
Q ss_pred EEEEcC
Q 001403 639 KILETP 644 (1084)
Q Consensus 639 ~iwd~~ 644 (1084)
.+.+..
T Consensus 392 ~~~~~~ 397 (417)
T TIGR02800 392 GLVSTD 397 (417)
T ss_pred EEEECC
Confidence 555533
No 264
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.32 E-value=2.1e-10 Score=131.74 Aligned_cols=235 Identities=13% Similarity=0.089 Sum_probs=149.1
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+......+.+..+.+.+...+|||||++||..+.+ .+ ...|.+||+.++.... +....+.+...+|||||
T Consensus 185 d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~--~~----~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG 254 (430)
T PRK00178 185 DYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFE--QK----RPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDG 254 (430)
T ss_pred CCCCCCceEEecCCCceeeeeECCCCCEEEEEEcC--CC----CCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCC
Confidence 33344456666777789999999999999986554 12 1578999998765432 22233445679999999
Q ss_pred CEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEecc
Q 001403 401 SLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEG 475 (1084)
Q Consensus 401 ~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~ 475 (1084)
++|+.. ..++ .|.+||+.+++.. .+..+........|+|||+.+ +++...++ .|.++|+.+++... +..
T Consensus 255 ~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~i-~f~s~~~g~~~iy~~d~~~g~~~~-lt~ 328 (430)
T PRK00178 255 SKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRTL-YFTSDRGGKPQIYKVNVNGGRAER-VTF 328 (430)
T ss_pred CEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCEE-EEEECCCCCceEEEEECCCCCEEE-eec
Confidence 999854 3444 5888899887532 344555667778999999952 33333333 57788888876432 221
Q ss_pred CCCcEEEEeecccCCCcEEEEEecC-C--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
.........|+ ++|+.++..+.+ + .|.+||+.+++...... . .......|+|||+.++..+.. .+...++++
T Consensus 329 ~~~~~~~~~~S--pdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~-~-~~~~~p~~spdg~~i~~~~~~-~g~~~l~~~ 403 (430)
T PRK00178 329 VGNYNARPRLS--ADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD-T-SLDESPSVAPNGTMLIYATRQ-QGRGVLMLV 403 (430)
T ss_pred CCCCccceEEC--CCCCEEEEEEccCCceEEEEEECCCCCEEEccC-C-CCCCCceECCCCCEEEEEEec-CCceEEEEE
Confidence 22222345664 466777766543 3 47788888765433222 1 222356899999999887753 345668888
Q ss_pred cCCCceEeeeeeccccccCceEEEEEcC
Q 001403 553 NESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
+... ...+.+..+. +.+...+|+|
T Consensus 404 ~~~g-~~~~~l~~~~---g~~~~p~ws~ 427 (430)
T PRK00178 404 SING-RVRLPLPTAQ---GEVREPSWSP 427 (430)
T ss_pred ECCC-CceEECcCCC---CCcCCCccCC
Confidence 8754 3334444333 4566666766
No 265
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=99.32 E-value=1.2e-11 Score=118.55 Aligned_cols=167 Identities=21% Similarity=0.287 Sum_probs=121.7
Q ss_pred chhHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhcccc--cccCccccch
Q 001403 3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFT--KVDDNRYSTK 71 (1084)
Q Consensus 3 ~~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~--~~~~~~~~~~ 71 (1084)
..++|+-|||+.||-.+||.++|+.+.+|+|+..+ -..+|.+|..|+-++|++.+..+. .++.+ ..
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n---~~ 100 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN---RE 100 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc---hh
Confidence 45789999999999999999999999999999762 578999999999999999999872 23333 23
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccc---chhccccccCCChHHHHHHHHHH
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIR---DHELLSKYYGDALSARKNMMLEL 148 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~---~~~~~~~~~~~~~~~r~~l~~~l 148 (1084)
+.|.+++|+++|++..+...+|+.|+|++|.|+...+++.++.|...|..--++ +.+...-| ....|.++...+
T Consensus 101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~l~---~~s~R~kvA~~v 177 (228)
T KOG2659|consen 101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAELL---SQSLRQKVASEV 177 (228)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHHHH---HHHHHHHHHHHH
Confidence 899999999999999999999999999999999987777766666655542222 11111111 234566666666
Q ss_pred HhhcccCccccccccCCCCcchHHHHHHHHhHHHH
Q 001403 149 KQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ 183 (1084)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~Q 183 (1084)
...|=..-- . --.++|..||+.-..-|
T Consensus 178 N~aiL~~~~------~--~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 178 NSAILASQE------H--ESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHHHHHhc------c--cccchHHHHHHHHHHHH
Confidence 554432111 0 12567888885555444
No 266
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=1.6e-10 Score=131.64 Aligned_cols=234 Identities=15% Similarity=0.096 Sum_probs=146.5
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
......+.+..+...+.+.+|||||++||..+.+ .|. ..|.+||+.++..... ..........+|||||+
T Consensus 205 ~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~--~g~----~~L~~~dl~tg~~~~l----t~~~g~~~~~~wSPDG~ 274 (448)
T PRK04792 205 YDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFE--NRK----AEIFVQDIYTQVREKV----TSFPGINGAPRFSPDGK 274 (448)
T ss_pred CCCCCceEeecCCCcccCceECCCCCEEEEEEec--CCC----cEEEEEECCCCCeEEe----cCCCCCcCCeeECCCCC
Confidence 3344445666677789999999999999987654 222 5789999987654221 11223345789999999
Q ss_pred EEEEE-eCCCE--EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccC
Q 001403 402 LLGVA-YSKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGH 476 (1084)
Q Consensus 402 ~las~-~~dg~--v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h 476 (1084)
.|+.. +.++. |.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.++|+.+++... +...
T Consensus 275 ~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~ 348 (448)
T PRK04792 275 KLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGKVSR-LTFE 348 (448)
T ss_pred EEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCCEEE-EecC
Confidence 88864 55554 788888877532 34455556778899999995 233333333 57777887776533 3222
Q ss_pred CCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 477 GAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
.......+|+ +||++|+..+. ++. |.++|++++.... +... .......|+|||+.++..... .+...+++++
T Consensus 349 g~~~~~~~~S--pDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~-~g~~~l~~~~ 423 (448)
T PRK04792 349 GEQNLGGSIT--PDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTY-QGKQVLAAVS 423 (448)
T ss_pred CCCCcCeeEC--CCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEec-CCceEEEEEE
Confidence 2223345674 46667766554 444 4556766655432 2221 122345799999999887653 3456688888
Q ss_pred CCCceEeeeeeccccccCceEEEEEcC
Q 001403 554 ESEGAIKRTYQGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~v~~~~~s~ 580 (1084)
. +|.....+..+. +.+...+|+|
T Consensus 424 ~-~G~~~~~l~~~~---g~~~~p~Wsp 446 (448)
T PRK04792 424 I-DGRFKARLPAGQ---GEVKSPAWSP 446 (448)
T ss_pred C-CCCceEECcCCC---CCcCCCccCC
Confidence 7 455556665544 4566777776
No 267
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.30 E-value=5.3e-10 Score=127.42 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=149.6
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.++|....... .+..+...+.+..|||||++|+..+.+ ..|.+||+.+++... +....+.....+|
T Consensus 198 ~~l~i~d~dG~~~~----~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~w 269 (448)
T PRK04792 198 YQLMIADYDGYNEQ----MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRF 269 (448)
T ss_pred eEEEEEeCCCCCce----EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeE
Confidence 46777777554322 133466788999999999999987543 358899998876322 2222334457899
Q ss_pred ecCCCcEEEEEEeCCCc--EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCe--EEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~--i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~--i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++. |.+||+.+++. ..+..+.......+|++ ||+.++..+. +|. |.++|+.+++...
T Consensus 270 SPDG~~-La~~~~~~g~~~Iy~~dl~tg~~-~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~- 344 (448)
T PRK04792 270 SPDGKK-LALVLSKDGQPEIYVVDIATKAL-TRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR- 344 (448)
T ss_pred CCCCCE-EEEEEeCCCCeEEEEEECCCCCe-EECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-
Confidence 999995 3344555664 77889887764 44555555566778854 6666665543 444 5555666554332
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-C--c
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--V 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-g--~ 593 (1084)
+..........+|+|||++++..+.. .+...|.++|+.+++....... . ......|+|+|+.|+..+.+ | .
T Consensus 345 Lt~~g~~~~~~~~SpDG~~l~~~~~~-~g~~~I~~~dl~~g~~~~lt~~-~----~d~~ps~spdG~~I~~~~~~~g~~~ 418 (448)
T PRK04792 345 LTFEGEQNLGGSITPDGRSMIMVNRT-NGKFNIARQDLETGAMQVLTST-R----LDESPSVAPNGTMVIYSTTYQGKQV 418 (448)
T ss_pred EecCCCCCcCeeECCCCCEEEEEEec-CCceEEEEEECCCCCeEEccCC-C----CCCCceECCCCCEEEEEEecCCceE
Confidence 22222333457899999999887653 2345688889988875432222 1 11234799999998876543 3 3
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++++. +|.....+..... .+...+|+|
T Consensus 419 l~~~~~-~G~~~~~l~~~~g--~~~~p~Wsp 446 (448)
T PRK04792 419 LAAVSI-DGRFKARLPAGQG--EVKSPAWSP 446 (448)
T ss_pred EEEEEC-CCCceEECcCCCC--CcCCCccCC
Confidence 777787 4555555544322 356677776
No 268
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.30 E-value=3.7e-10 Score=114.68 Aligned_cols=251 Identities=10% Similarity=0.132 Sum_probs=181.9
Q ss_pred CCCCeEEEEEcCCCC--EEEEEeCCCEEEEEEccCCccccce---eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 387 PGVSVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQ---LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 387 h~~~V~~v~fspdg~--~las~~~dg~v~iwd~~~~~~~~~~---~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
....|..++|.-|++ .|...+.+..+..+........... .......++|..++.. || .|++|-.+|.+.+
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~-dg---~Litc~~sG~l~~ 129 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA-DG---TLITCVSSGNLQV 129 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc-CC---EEEEEecCCcEEE
Confidence 346788888876654 4555546666777777665543321 1223445667777765 44 4888888999999
Q ss_pred EECCCCc----eeeEeccCCCcEEEEeecccCCCcEEEEEecC--CeEEEEECCCCCceEeecCCC---------CeEEE
Q 001403 462 WDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPG---------LGCTR 526 (1084)
Q Consensus 462 wd~~~g~----~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--g~i~iwd~~~~~~~~~~~~~~---------~~i~~ 526 (1084)
|..+.+. .+..+..+ ..+..+.-++. ...++++|+.. ..+.+||+...+.++.-.... -+++.
T Consensus 130 ~~~k~~d~hss~l~~la~g-~g~~~~r~~~~-~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~td 207 (412)
T KOG3881|consen 130 RHDKSGDLHSSKLIKLATG-PGLYDVRQTDT-DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITD 207 (412)
T ss_pred EeccCCccccccceeeecC-CceeeeccCCC-CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecc
Confidence 9988543 23334333 44555544332 33577779999 889999998875555433221 15678
Q ss_pred EEEcCC--CCEEEEEeeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 527 MAYSAN--GRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 527 ~~~s~d--~~~l~~~~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
+.|-+. ...+++++. -+.+++||.+.+ +++..+.... .++.++...|+++++++|..-|.+..||.+.++
T Consensus 208 i~Fl~g~~~~~fat~T~----~hqvR~YDt~~qRRPV~~fd~~E---~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~k 280 (412)
T KOG3881|consen 208 IRFLEGSPNYKFATITR----YHQVRLYDTRHQRRPVAQFDFLE---NPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGK 280 (412)
T ss_pred ceecCCCCCceEEEEec----ceeEEEecCcccCcceeEecccc---CcceeeeecCCCcEEEEecccchhheecccCce
Confidence 889887 888999876 667999999865 4566666555 889999999999999999999999999999999
Q ss_pred EEEE-EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 604 LLTT-IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 604 ~~~~-~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
.... +.+- ...+.++..+|.+.++++++-|+.+||+|+.+.+.+...
T Consensus 281 l~g~~~kg~--tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kv 328 (412)
T KOG3881|consen 281 LLGCGLKGI--TGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKV 328 (412)
T ss_pred eeccccCCc--cCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhh
Confidence 8876 5433 346899999999999999999999999999986655443
No 269
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.29 E-value=2.9e-10 Score=130.72 Aligned_cols=221 Identities=19% Similarity=0.173 Sum_probs=145.8
Q ss_pred CCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
+......+.+..+...+...+|||||++||....+ .+ ...|.+||+.++.... +..+...+.+++|+|||
T Consensus 176 d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~--~~----~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg 245 (417)
T TIGR02800 176 DYDGANPQTITRSREPILSPAWSPDGQKLAYVSFE--SG----KPEIYVQDLATGQREK----VASFPGMNGAPAFSPDG 245 (417)
T ss_pred cCCCCCCEEeecCCCceecccCCCCCCEEEEEEcC--CC----CcEEEEEECCCCCEEE----eecCCCCccceEECCCC
Confidence 33344456667777789999999999999997554 12 1679999998764332 22355567789999999
Q ss_pred CEEEEE-eCCC--EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC--cEEEEECCCCceeeEec
Q 001403 401 SLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK--TIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 401 ~~las~-~~dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~--~i~vwd~~~g~~~~~~~ 474 (1084)
+.|+.. +.++ .|.+||+.++... .+..+........|+|||+. |+..+. ++ .|.++|+.+++. ..+.
T Consensus 246 ~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~~~-~~l~ 318 (417)
T TIGR02800 246 SKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGGEV-RRLT 318 (417)
T ss_pred CEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCCCE-EEee
Confidence 988754 3333 5888999886532 34445555667899999994 444432 33 588888877764 3444
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~ 551 (1084)
.+...+....|+ ++|.+++.++.++ .|.+||+.+..... +... .......|+|||+.|+..+..+ +...+++
T Consensus 319 ~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~-~~~~~p~~spdg~~l~~~~~~~-~~~~l~~ 393 (417)
T TIGR02800 319 FRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDT-GLDESPSFAPNGRMILYATTRG-GRGVLGL 393 (417)
T ss_pred cCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEeCC-CcEEEEE
Confidence 455556677774 4677888877775 78888887744332 2222 2334568999999998887643 3455666
Q ss_pred ecCCCceEeeeee
Q 001403 552 WNESEGAIKRTYQ 564 (1084)
Q Consensus 552 wd~~~~~~~~~~~ 564 (1084)
.+.. +.....+.
T Consensus 394 ~~~~-g~~~~~~~ 405 (417)
T TIGR02800 394 VSTD-GRFRARLP 405 (417)
T ss_pred EECC-CceeeECC
Confidence 6644 44444443
No 270
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=1e-09 Score=126.01 Aligned_cols=238 Identities=14% Similarity=0.114 Sum_probs=150.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
..+.++|....... .+..+...+...+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|
T Consensus 179 ~~l~~~d~~g~~~~----~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~ 250 (430)
T PRK00178 179 YTLQRSDYDGARAV----TLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAW 250 (430)
T ss_pred eEEEEECCCCCCce----EEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEE
Confidence 35777777654321 133466789999999999999887643 469999999886422 3333345567899
Q ss_pred ecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CC--eEEEEECCCCCceEe
Q 001403 442 SAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVD 516 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg--~i~iwd~~~~~~~~~ 516 (1084)
+|||+. ++++.+.++ .|.+||+.++... .+..+........|+ +||+.++..+. +| .|.++++.+++....
T Consensus 251 SpDG~~-la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~l 326 (430)
T PRK00178 251 SPDGSK-LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERV 326 (430)
T ss_pred CCCCCE-EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 999995 233444444 6888899887653 455555555666774 46666665543 44 466677766554322
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---Cc
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HV 593 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~ 593 (1084)
...........|+|||+.++..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..
T Consensus 327 -t~~~~~~~~~~~Spdg~~i~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~-----~~~~p~~spdg~~i~~~~~~~g~~~ 399 (430)
T PRK00178 327 -TFVGNYNARPRLSADGKTLVMVHRQ-DGNFHVAAQDLQRGSVRILTDTS-----LDESPSVAPNGTMLIYATRQQGRGV 399 (430)
T ss_pred -ecCCCCccceEECCCCCEEEEEEcc-CCceEEEEEECCCCCEEEccCCC-----CCCCceECCCCCEEEEEEecCCceE
Confidence 2222334457899999999887643 23456999999988654332221 12245899999999886643 34
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEec
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
+++++... .....+....+ .+...+|+|
T Consensus 400 l~~~~~~g-~~~~~l~~~~g--~~~~p~ws~ 427 (430)
T PRK00178 400 LMLVSING-RVRLPLPTAQG--EVREPSWSP 427 (430)
T ss_pred EEEEECCC-CceEECcCCCC--CcCCCccCC
Confidence 77777754 33344433222 355666765
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.27 E-value=6.9e-10 Score=119.18 Aligned_cols=194 Identities=13% Similarity=0.188 Sum_probs=155.4
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe------ec------------CCCcEEEEEEeCCCc
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SA------------PCKQISVITCGDDKT 458 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~------------d~~~l~l~s~~~d~~ 458 (1084)
.|-+.|+|....||.++|||...++....+.....-.+.-++..| +| .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 456789999999999999999988765433322223334444444 11 122237888888999
Q ss_pred EEEEECCCCceeeEec--cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 459 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
|.++++..|+...++. .|.+.|.++.++ .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 9999999999988885 699999999874 355789999999999999999998888998888899999999999999
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-----CCEEEE-EECCCcEEEEECCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-----~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
++++. .|.+||+++++.+..|.||. ++|+++.|..+ |.++++ ...+..+.+|-...
T Consensus 160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 98853 59999999999999999999 99999999877 677776 44566677886544
No 272
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.26 E-value=7.6e-11 Score=117.29 Aligned_cols=357 Identities=14% Similarity=0.138 Sum_probs=224.5
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
.+..++||.+.|+....-+..+ -+++.+.|.++++|--....+.. .......+++++.+.++.+.|+++-. +
T Consensus 16 ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----n 89 (404)
T KOG1409|consen 16 LLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----N 89 (404)
T ss_pred hhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----c
Confidence 4567889999998887766554 59999999999999544333222 12233457899999999999998865 4
Q ss_pred eeEEEecC----CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 547 SFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 547 ~~i~~wd~----~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
+.+.-+.+ +.....+.+..|. ..+..+-|+-...++++.+.|..+.---.+.+..+........ ..+..+
T Consensus 90 gtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~~ 163 (404)
T KOG1409|consen 90 GTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQF 163 (404)
T ss_pred ceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCce
Confidence 45655543 3344556666676 8899999998889999999988876555555554433322111 111112
Q ss_pred ecCCCEEEEEECCCeEEEEEcC--CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 623 NKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
.-. +..+|...|.+.+..+. .-..+..+.+|.+.+.++.+. +....+.++..|.
T Consensus 164 d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d~ 219 (404)
T KOG1409|consen 164 DAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASDH 219 (404)
T ss_pred eeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEeccccC
Confidence 111 55566666776666554 346778889999999999997 4566788999999
Q ss_pred ccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccce-----ecCCeee
Q 001403 701 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRLY 775 (1084)
Q Consensus 701 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~~ 775 (1084)
.+.+||+......... ..+|...|..+...+--+.+++++.||.|.+|+++.......+-... -..+..|
T Consensus 220 ~vi~wdigg~~g~~~e-----l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffw 294 (404)
T KOG1409|consen 220 SVIMWDIGGRKGTAYE-----LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFW 294 (404)
T ss_pred ceEEEeccCCcceeee-----eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHH
Confidence 9999998754433322 23578888888888888999999999999999998654433222221 1233444
Q ss_pred cCCCCCccccccCcCC---CCCCCccEEEecCCCCEEEEEeCCeEEEEEcC-------CceeEEEEcCCCCCeEEEEEcC
Q 001403 776 QPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+...--.....-+... .-...+...+-+.-..+...+..-.+++-|.- +...+..+......|+++.+..
T Consensus 295 n~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe 374 (404)
T KOG1409|consen 295 NFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE 374 (404)
T ss_pred HHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhhh
Confidence 3321110100000000 01112222222222222222323344544431 1122334433446799999988
Q ss_pred CCCcEEEEEeCCCeEEEEEcCC
Q 001403 846 HDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
.-.+|+|++.|..|+|||+.+
T Consensus 375 -tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 375 -TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred -hccceeecCCceEEEEEechh
Confidence 677999999999999999864
No 273
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.22 E-value=2.2e-08 Score=112.99 Aligned_cols=209 Identities=9% Similarity=0.059 Sum_probs=125.1
Q ss_pred eCCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc----C---
Q 001403 813 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R--- 880 (1084)
Q Consensus 813 sdg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----~--- 880 (1084)
.++.+..||.++|+.+..+....... .+..+. ++ .++.+..+|.+..+|..+|+.+........ .
T Consensus 153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~ 229 (377)
T TIGR03300 153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER 229 (377)
T ss_pred CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence 35667777777777665554322211 111222 33 677788899999999999987755431100 0
Q ss_pred EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcC
Q 001403 881 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAE 957 (1084)
Q Consensus 881 V~~l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~ 957 (1084)
...+.-+| .+..+..++.+|.+..||..+|+..-... ... ..... .++..+.+ ..++.++.+|..
T Consensus 230 ~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~---~~~-------~~~p~--~~~~~vyv~~~~G~l~~~d~~ 297 (377)
T TIGR03300 230 LVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRD---ASS-------YQGPA--VDDNRLYVTDADGVVVALDRR 297 (377)
T ss_pred hhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeec---cCC-------ccCce--EeCCEEEEECCCCeEEEEECC
Confidence 00010111 34577778889999999999886433211 111 11122 23444444 678999999999
Q ss_pred CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCE
Q 001403 958 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ 1037 (1084)
Q Consensus 958 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~ 1037 (1084)
+|+.+............+... .+.+|++++.+|.|.++|..+|+.+.++.... ..+... -+.. ++.
T Consensus 298 tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~--------~~~~~s-p~~~---~~~ 363 (377)
T TIGR03300 298 SGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG--------SGIASP-PVVV---GDG 363 (377)
T ss_pred CCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC--------CccccC-CEEE---CCE
Confidence 998876532111112222222 46688999999999999999999998776221 111110 1122 357
Q ss_pred EEEEeCCCcEEEE
Q 001403 1038 FAVGLTNGEVYVI 1050 (1084)
Q Consensus 1038 l~~~~~dg~v~vw 1050 (1084)
|++++.||.|+.|
T Consensus 364 l~v~~~dG~l~~~ 376 (377)
T TIGR03300 364 LLVQTRDGDLYAF 376 (377)
T ss_pred EEEEeCCceEEEe
Confidence 8899999999876
No 274
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.22 E-value=1.9e-09 Score=107.39 Aligned_cols=294 Identities=14% Similarity=0.120 Sum_probs=173.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--cccceeeeeccc------------ccEeEEEeecCCCcEEEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~------------~~V~~l~~s~d~~~l~l~s 452 (1084)
..+-|.+|.|..+|.+||+|..+|.|.++.-+... ...-...+..|. ..|..+.|.+++....++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 34678999999999999999999999999754322 111222333443 4688999999887656777
Q ss_pred EeCCCcEEEEECCCCceee-----EeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCCeEEE
Q 001403 453 CGDDKTIKVWDAVTGSRTY-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTR 526 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~-----~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~ 526 (1084)
...|.+|++|-+....... ..++....+.++.. .+.+..|-.+.. .+. .--..|...|.+
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~--------p~~~~~~~~vea------~prRv~aNaHtyhiNS 169 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRL--------PVEGRHDLEVEA------SPRRVYANAHTYHINS 169 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeec--------eeeccccceeee------eeeeeccccceeEeee
Confidence 7789999999876433211 11112222333321 111111111110 011 112356668999
Q ss_pred EEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee---eeecccc--ccCceEEEEEcCCC-CEEEEEECCCcEEEEECC
Q 001403 527 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR---TYQGLQL--QHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 527 ~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~---~~~~~~~--~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~ 600 (1084)
+.++.|+..++++. +-.|.+|++.--..-. .++.+.. -..-|++..|+|.. +.++-.+..|+|++-|++
T Consensus 170 IS~NsD~Et~lSAD-----dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR 244 (433)
T KOG1354|consen 170 ISVNSDKETFLSAD-----DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMR 244 (433)
T ss_pred eeecCccceEeecc-----ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeech
Confidence 99999999999874 7779999986322111 1111110 01347888899975 556668889999999998
Q ss_pred CCeEE----EEEcCC----------CCCCCcceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeeeccccccceeEEEEc
Q 001403 601 KVQLL----TTIDAG----------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 601 ~~~~~----~~~~~~----------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
...+- +.+... .-...|..+.|+++|+++++-+. -+|++||+. ..+++.+...|...-..+
T Consensus 245 ~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL--- 320 (433)
T KOG1354|consen 245 QSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL--- 320 (433)
T ss_pred hhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH---
Confidence 43221 111111 11234778999999999998755 689999995 445555554432210000
Q ss_pred CCCceeeeeccCc-eeEecCCCCCCCCccceecccCccccccce
Q 001403 666 PISTVTGAGIANG-SVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 666 p~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
.++..+++ .-.|....+.++..+++|+..+..++++..
T Consensus 321 -----c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~ 359 (433)
T KOG1354|consen 321 -----CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLA 359 (433)
T ss_pred -----HHHhhccchhheeEEEEcCCcceEecccccceEEEecCC
Confidence 00000000 000111114567789999999999999854
No 275
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.18 E-value=2.6e-08 Score=112.41 Aligned_cols=183 Identities=13% Similarity=0.059 Sum_probs=111.9
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
.++.++.++.|..+|..+|+.+-+............. ++..++.++.+|.+..+|.++++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 5777888899999999999988766543322222222 345788889999999999998888776554332211112
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce-----EEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v-----~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
. .+..++.+.. ++.++.||.++|+.+..+.... ..+ .+.... +..++.+..+|.+..+|..+|+
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~ 211 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ 211 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence 2 2345555443 6679999999999877765433 111 111111 3467788889999999999998
Q ss_pred EEEEEcCCCCCC--Cc---ceEEEec--CCCEEEEEECCCeEEEEEcCCC
Q 001403 604 LLTTIDAGGGLP--EN---PRICFNK--NGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 604 ~~~~~~~~~~~~--~v---~~v~~s~--~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.......... .+ ..+.-+| .+..+++++.+|.+..||..++
T Consensus 212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG 261 (377)
T TIGR03300 212 PLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSG 261 (377)
T ss_pred EeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCC
Confidence 776543221100 00 0000011 2345666666677777766554
No 276
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.13 E-value=1.1e-08 Score=110.27 Aligned_cols=188 Identities=14% Similarity=0.227 Sum_probs=147.1
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCC---CCeEEEEE------cC-------------CCCcEEEEEeCCCeE
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAF------NP-------------HDNNVIAIGMDDSTI 860 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~------s~-------------~d~~~la~g~~dg~i 860 (1084)
|.+.++|... ||.+++|+..+++....+.+.. +..++.+| +| .|...++-|...|.|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 4456777765 7999999999998887776422 23333333 11 145688889999999
Q ss_pred EEEEcCCceeeeeec--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 861 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~--~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
.+|+...|+....+. .|.+.|.++.++.+-..|-|++.|+.+..|+...+. .+........ .+.+++.+|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~ 154 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP 154 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence 999999999988886 599999999999999999999999999999999854 3333333322 588999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccC-----CCEEEE-EeCCCcEEEEEcCC
Q 001403 939 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVFT-SFVDGTLSIHEASN 1001 (1084)
Q Consensus 939 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~t-~~~dg~i~vwd~~~ 1001 (1084)
||+.++++ .++|++||+++++.+.. +.||.++|.++.|..+ |.++++ ...+.-+.+|-+..
T Consensus 155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99988875 47899999999998887 7799999999999887 666554 44455688887665
No 277
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.09 E-value=2.2e-08 Score=98.04 Aligned_cols=295 Identities=12% Similarity=0.108 Sum_probs=183.0
Q ss_pred CceEEEEcCCCceeeeecccccCcccc---ccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC---CCC-EEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKL---FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP---DGS-LLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~---~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp---dg~-~las~~~ 408 (1084)
++.++.--++ .||+|.++...|++. ..|.+.+|++...+......+..-.+..+..+.|+. +|. .|+-+..
T Consensus 16 ~~C~l~~~~~--vLa~GTY~Lde~d~~smvR~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a 93 (339)
T KOG0280|consen 16 PICCLCHTRN--VLAAGTYLLDEGDYPSMVRSGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHA 93 (339)
T ss_pred Cccccccccc--eEEEeeEEecCCCCchheeccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccc
Confidence 3444444444 889988887777332 358899999986554432222222445677777764 555 5666778
Q ss_pred CCEEEEEEccCCccccceeeeeccccc---EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee--eEeccCCCcEEEE
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--YSFEGHGAPVYSL 483 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~---V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~--~~~~~h~~~v~~~ 483 (1084)
.|.|.++.....+....+..+..-.-. -.++.|++.+. -++++..+|.+.+-+....... ++++.|..+....
T Consensus 94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta 171 (339)
T KOG0280|consen 94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTA 171 (339)
T ss_pred cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeee
Confidence 899999987654332221122222222 34678898888 5788888999987665555443 4789999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCc-eEe-ecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCCC-ceE
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVD-YDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE-GAI 559 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~-~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~-~~~ 559 (1084)
.|+.. +.+++++|+.|+.+..||++..+. ... ...|...|.++.-+| ++.++++|+. +-.|++||.++ +++
T Consensus 172 ~f~~~-~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kP 246 (339)
T KOG0280|consen 172 KFSDK-EPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKP 246 (339)
T ss_pred ecccC-CCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCc
Confidence 88744 447999999999999999995442 222 345666888888776 6778999887 55699999884 555
Q ss_pred eeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCCeEE--EEEcCCCCCCCcceEEEecC----CCEEEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKN----GTLLAVI 632 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~----~~~l~~~ 632 (1084)
+..-.. .+.|..+.++|.-. .++.++.-.-.+|-+...+... ..+..+.. -.++++..| ...+|++
T Consensus 247 l~~~~v----~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~---hdSl~YG~DWd~~~~~lATC 319 (339)
T KOG0280|consen 247 LFKAKV----GGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKI---HDSLCYGGDWDSKDSFLATC 319 (339)
T ss_pred cccCcc----ccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccc---ccceeeccccccccceeeee
Confidence 433322 36899999998643 2233333344566665543322 11111111 234444433 3457775
Q ss_pred EC-CCeEE-EEEcCCC
Q 001403 633 AN-ENRIK-ILETPES 646 (1084)
Q Consensus 633 ~~-dg~i~-iwd~~~~ 646 (1084)
+. |+.++ +|-.-++
T Consensus 320 sFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 320 SFYDKKIRQLWLHITG 335 (339)
T ss_pred eccccceeeeeeeccC
Confidence 43 55544 6654433
No 278
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.05 E-value=1.1e-08 Score=113.16 Aligned_cols=508 Identities=11% Similarity=0.105 Sum_probs=266.0
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEc
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY 417 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~ 417 (1084)
+-..|+|...++|+++..+..| |+|.||--......-.. -.-.+++++|+|..-.||.|..-|.+.+|..
T Consensus 19 ti~SWHPsePlfAVA~fS~er~-----GSVtIfadtGEPqr~Vt-----~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~ 88 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERG-----GSVTIFADTGEPQRDVT-----YPVHATSLCWHPEEFVLAQGWEMGVSDVQKT 88 (1416)
T ss_pred cccccCCCCceeEEEEecCCCC-----ceEEEEecCCCCCcccc-----cceehhhhccChHHHHHhhccccceeEEEec
Confidence 4467999999999988887776 88888864322111000 1234567999999999999999999999998
Q ss_pred cCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE--eccC--CCcEEEEeecccCCCc-
Q 001403 418 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPVYSLCPHAKENIH- 492 (1084)
Q Consensus 418 ~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~--~~~h--~~~v~~~~~~~~~~~~- 492 (1084)
.+.+.-. ....|..+|..+.||++|. .++|+..-|.+.+|....-..++. +..| ...++-++|.-+.++.
T Consensus 89 ~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee 163 (1416)
T KOG3617|consen 89 NTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREE 163 (1416)
T ss_pred CCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHH
Confidence 8764322 4558999999999999999 899999999999998763222221 2222 2334444443333321
Q ss_pred -----EEEEEecCCeEE-EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 493 -----FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 493 -----~l~s~s~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
..+..+.+..+- .+++.......... -.-.|+|..++.++. +|+|+-.|- .|+.....+..
T Consensus 164 ~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvdq-~g~~~~V~k~d 230 (1416)
T KOG3617|consen 164 KFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVDQ-NGRQRTVHKLD 230 (1416)
T ss_pred hhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEcC-CCcEEEEEEcc
Confidence 122333333322 33333111111110 112377887777765 556776663 34443333322
Q ss_pred ccccCceEEEEEcCCCCEEEEEE------------------------------CCCcEEEEECCCCeEE--EEEcCCCCC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG------------------------------DDHVIKIWDMNKVQLL--TTIDAGGGL 614 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~------------------------------~dg~i~iwd~~~~~~~--~~~~~~~~~ 614 (1084)
. . ..+-|.+...-+++.- ..|.|-+=... |-+. ..+.. ...
T Consensus 231 S----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEss-GvLr~~eKyg~-e~g 303 (1416)
T KOG3617|consen 231 S----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESS-GVLRKSEKYGL-ELG 303 (1416)
T ss_pred c----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCcccccccc-ccccCCcchhh-hcC
Confidence 1 0 0111111111111111 11211111110 1000 00000 112
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCC-------e---eeeccccccceeEEEEcCCCceeeeeccCceeEecC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESN-------S---VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~-------~---~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~ 684 (1084)
..+.+++++..+..+..|...|.+.+|--.... . +...+...+.|..+.|.|..+.+++.+...-+.+..
T Consensus 304 e~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~~v~ll~E 383 (1416)
T KOG3617|consen 304 EGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEEDVVLLGE 383 (1416)
T ss_pred CceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhhheeeecc
Confidence 347899999999999999999999999654321 1 122233345566677776554443333222111100
Q ss_pred CCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
.+ .. ..|.+...++.-+.+.-.|..+.
T Consensus 384 ~~-----l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~------------------- 410 (1416)
T KOG3617|consen 384 NS-----LT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT------------------- 410 (1416)
T ss_pred Cc-----hH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------------------
Confidence 00 00 00111211111111111111111
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE--EcCCCCCeEEEE
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT--IMPPSPTATSLA 842 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~--~~~~~~~i~~l~ 842 (1084)
+|. -.. + ...-++..++.+. ..++...+.+|..|++.+...... ........++++
T Consensus 411 --------------sGv-~~~--l---~~~~~~~gi~l~e--~~lvvwNgr~v~~y~lq~SG~la~~~~~tF~cet~~la 468 (1416)
T KOG3617|consen 411 --------------SGV-SQD--L---KLSIPSAGICLGE--KQLVVWNGRTVVTYDLQTSGSLATIQCTTFSCETTSLA 468 (1416)
T ss_pred --------------cch-hhh--h---hhccchhhheecc--ceEEEEcCceEEEEEecccchhHHHhhhhhccccchHh
Confidence 010 000 0 0122344455533 456777778899999864321111 111222334455
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeeeee--cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeec
Q 001403 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT 920 (1084)
Q Consensus 843 ~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l--~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~ 920 (1084)
+.. .++...++.+ |.++.+. |...+.+ ..-.+.|.-+.++ |.+++.+...+.++-+|+...+.+.......
T Consensus 469 ~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvsr~e~ka~~~~~s 541 (1416)
T KOG3617|consen 469 IVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVSRAELKAVSYFSS 541 (1416)
T ss_pred Hhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhhhhcccccccccc
Confidence 553 4455556555 4444333 3333222 2334556555554 8889988888888889988766554433444
Q ss_pred CCCCccCCCCceEEEEccCCCEEEE---EeC----CeEEEEEcCCccee
Q 001403 921 PDGVMTLAPSETHIQFHKDQTRFLL---VHE----THLAIYEAEELTCL 962 (1084)
Q Consensus 921 ~~~~~~~~~~v~~~~~s~dg~~la~---~~d----~~i~vwd~~~~~~~ 962 (1084)
..+.....+.+..+..+..|..+.+ ..+ .++..||.++++..
T Consensus 542 ~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~ 590 (1416)
T KOG3617|consen 542 DRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ 590 (1416)
T ss_pred cccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence 4444444457788888887776654 222 47999999887643
No 279
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.04 E-value=1.6e-07 Score=117.14 Aligned_cols=260 Identities=12% Similarity=0.083 Sum_probs=162.2
Q ss_pred EEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCE
Q 001403 730 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 808 (1084)
Q Consensus 730 ~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 808 (1084)
..++++++ +..+++-..++.|.+++.........+.. . ......|. +. .+.-.....+++++++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~---g---~~G~~dG~------~~-~a~f~~P~GIavd~~gn~ 637 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGST---G---EEGLRDGS------FE-DATFNRPQGLAYNAKKNL 637 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccC---C---CcCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence 45788875 45555556678888887643211000000 0 00000010 00 012334678999999887
Q ss_pred EEEEe--CCeEEEEEcCCceeEEEEcCC-----------------CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 809 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 809 l~~~s--dg~i~vwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
|++++ ++.|+++|..++. +.++.+. -.....++++|+++.++++...++.|++||..++.
T Consensus 638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~ 716 (1057)
T PLN02919 638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV 716 (1057)
T ss_pred EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence 77765 4779999987764 3333210 11346799999667777777788999999998765
Q ss_pred eeeeec---------cc------ccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeee--------eecC---C
Q 001403 870 VISKLE---------GH------SKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D 922 (1084)
Q Consensus 870 ~~~~l~---------~h------~~~V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~ 922 (1084)
.. .+. ++ -.....++|+||++ ++++-+.++.|++||+.++......- +... .
T Consensus 717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d 795 (1057)
T PLN02919 717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD 795 (1057)
T ss_pred EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence 42 111 11 12356799999998 44555667999999998765321100 0000 0
Q ss_pred CC--ccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEE
Q 001403 923 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT 987 (1084)
Q Consensus 923 ~~--~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t 987 (1084)
+. ...-.....++++++|.++++ ..+++|++||..++......-.+ +-.....+++++||+.+++
T Consensus 796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 00 000113468999999987777 57889999999877654332111 1235678999999999999
Q ss_pred EeCCCcEEEEEcCCCce
Q 001403 988 SFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 988 ~~~dg~i~vwd~~~~~~ 1004 (1084)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999999875
No 280
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.01 E-value=2.2e-07 Score=115.92 Aligned_cols=255 Identities=11% Similarity=0.079 Sum_probs=160.2
Q ss_pred cEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC--C------------CCCeEEEEEcCCCCcEEEEEe-CCCeE
Q 001403 798 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI 860 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~la~g~-~dg~i 860 (1084)
..+++++++..+.++. ++.|++||.. ++.+..+.+ . -.....+++++ ++..|+++. .++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 5688988655444443 5889999986 444443332 1 12357899998 666555554 45789
Q ss_pred EEEEcCCceeeeeeccc-----------------ccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeee---ee
Q 001403 861 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ 919 (1084)
Q Consensus 861 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~ 919 (1084)
+++|..++.. .++.+- -.....++|+| ++.++++.+.++.|++||..++......- ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999887653 333210 11346799999 56677777888999999998765322100 00
Q ss_pred cCCCCc---cCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcceeeEee------------cCC--------CCCEE
Q 001403 920 TPDGVM---TLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWF------------PIS--------SVPIS 974 (1084)
Q Consensus 920 ~~~~~~---~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~~~~~~------------~~h--------~~~v~ 974 (1084)
...+.. ..-.....++++|||..|.+ ..++.|++||+.++....... ..+ -....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 001110 01124567999999986665 367899999998765321100 000 11235
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecccc-ccCCCC--cccceeeeEEEECCCCCCEEEEEeCCCcEEEEc
Q 001403 975 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 975 ~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
+++|+++|..+++-+.++.|++||..++.......... ....+. ...--.|..++++| ||+.+++-+.++.|++|+
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999998988899999999999887654332110 000000 00112456788998 588888888999999999
Q ss_pred CCCCC
Q 001403 1052 PNEPG 1056 (1084)
Q Consensus 1052 ~~~~~ 1056 (1084)
+....
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 96643
No 281
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=1.9e-09 Score=113.29 Aligned_cols=242 Identities=15% Similarity=0.256 Sum_probs=171.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC-cccc---ceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~-~~~~---~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
.+.||...|..++--.+.+-+++++.|.+|++|.+... ..+. ...++..|+.+|.++.|-.+-+ .++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 37789999999988778888999999999999998742 2222 4557889999999999999988 66665 889
Q ss_pred EEEEECCCCceeeEec-----cCCCcEEEEeecccCCCcEEEEE-ecCCeEEEEECCCCCceEeec-----CCCCeEEEE
Q 001403 459 IKVWDAVTGSRTYSFE-----GHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRM 527 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~-----~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~ 527 (1084)
|.+||.--|+.+..+. +..+.|.++ ++-+...++.+ +...+|+++|.+..+-..++. .+...+.++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 9999998888775442 222334443 23244555555 788999999988776554443 344568899
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE-EECCCCeEEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLT 606 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i-wd~~~~~~~~ 606 (1084)
+..+.|+.++++-. +|.|.+.|.++|+.+..+.... .....++ .|..+.++....|.++.+ |...+|....
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~ 954 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHL 954 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeee
Confidence 99999999998865 6779999999999887766544 2333332 366677777788889988 9888776655
Q ss_pred EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
....... ..--...-|..++++...+.+.+|.-
T Consensus 955 q~kpppe----pahflqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 955 QDKPPPE----PAHFLQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred ccCCCCc----chhhhhccCceeEEeccCcEEEEEec
Confidence 5442211 11111123556777777677777753
No 282
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.97 E-value=1.1e-07 Score=106.63 Aligned_cols=214 Identities=14% Similarity=0.053 Sum_probs=132.3
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
.+......+.+.... ......|||||+. ++..+.+ .+. ..|.++|+.++..... ....+.+....|||
T Consensus 174 ~d~dg~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~--~~~----~~Iyv~dl~tg~~~~l----t~~~g~~~~~~~SP 242 (419)
T PRK04043 174 ADYTLTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYG--ERK----PTLYKYNLYTGKKEKI----ASSQGMLVVSDVSK 242 (419)
T ss_pred ECCCCCceeEEccCC-CeEeEEECCCCCcEEEEEEcc--CCC----CEEEEEECCCCcEEEE----ecCCCcEEeeEECC
Confidence 334344344444433 7789999999986 6654433 112 6789999987654332 22445667788999
Q ss_pred CCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEe
Q 001403 399 DGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 399 dg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~ 473 (1084)
||+.|+.... +..|.++|+.+++. + .+..+.+......|+|||+.+++.+. ..+ .|.+.|+.+|+..+..
T Consensus 243 DG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g~~~rlt 317 (419)
T PRK04043 243 DGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSGSVEQVV 317 (419)
T ss_pred CCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCCCeEeCc
Confidence 9998876532 34688888888753 2 23334433445689999996444432 223 6888898887763322
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
. .... ...| ++||+.++..+.. ..|.+.|++++.... +.... ......|+|||+.++..... .
T Consensus 318 ~-~g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~~-~~~~p~~SPDG~~I~f~~~~-~ 389 (419)
T PRK04043 318 F-HGKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTANG-VNQFPRFSSDGGSIMFIKYL-G 389 (419)
T ss_pred c-CCCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCCC-CcCCeEECCCCCEEEEEEcc-C
Confidence 2 1111 2356 4577777666543 257777877765433 33222 33368899999999887654 3
Q ss_pred CCeeEEEecCCCc
Q 001403 545 GESFLVEWNESEG 557 (1084)
Q Consensus 545 ~~~~i~~wd~~~~ 557 (1084)
+...+.+.++...
T Consensus 390 ~~~~L~~~~l~g~ 402 (419)
T PRK04043 390 NQSALGIIRLNYN 402 (419)
T ss_pred CcEEEEEEecCCC
Confidence 4556778887543
No 283
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.95 E-value=2.9e-07 Score=91.07 Aligned_cols=205 Identities=19% Similarity=0.156 Sum_probs=140.1
Q ss_pred EEecCCCCEEEEEeCCeEEEEEcCCc--eeEEE---EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 800 FALSKNDAYLFSASGGVISLYIVMTF--KTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
++.+.||+.||+..|..|.+-...+. ..+.. .+.....=..++||| |+.+||.+...|+|++||+...++ ..+
T Consensus 3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~l-f~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSEL-FVI 80 (282)
T ss_pred eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEeccccee-EEc
Confidence 67889999999999999988876542 11122 223334568899999 999999999999999999985443 233
Q ss_pred cc-------cccCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCCCc---eeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 875 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWG---IQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 875 ~~-------h~~~V~~l~~spd~------~~l~s~s~dg~I~iwd~~~~~---~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
.. -...|..+.|.+-. ..|+.-..+|.++-|-+..+. ......+.....+. ..|.++.+.|
T Consensus 81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp---~Gi~~~vy~p 157 (282)
T PF15492_consen 81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYP---HGINSAVYHP 157 (282)
T ss_pred CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCC---CceeEEEEcC
Confidence 21 23567777776532 245556678888877764322 12222233322223 3799999999
Q ss_pred CCCEEEEEe-----CC-------eEEEEEcCCcceeeE--------------------ee--------cCCCCCEEEEEE
Q 001403 939 DQTRFLLVH-----ET-------HLAIYEAEELTCLKQ--------------------WF--------PISSVPISQATF 978 (1084)
Q Consensus 939 dg~~la~~~-----d~-------~i~vwd~~~~~~~~~--------------------~~--------~~h~~~v~~l~f 978 (1084)
..++|++|+ ++ -+.-|.+-++..-.. +. ......|..|..
T Consensus 158 ~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSl 237 (282)
T PF15492_consen 158 KHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSL 237 (282)
T ss_pred CCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEE
Confidence 999988841 11 366776643321110 00 112567889999
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
||||+.||+...+|.|.+|++++..++.++.
T Consensus 238 SPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 238 SPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred CCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 9999999999999999999999999887776
No 284
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.94 E-value=0.00032 Score=81.04 Aligned_cols=586 Identities=11% Similarity=0.103 Sum_probs=288.3
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEcc-CCccccc---eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~-~~~~~~~---~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
-...++|...+.+..+|.+...-+. +++.... ....-+...-..|+..-++| +++.|+.-|.=.+-.+.+...
T Consensus 263 ~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d 339 (1096)
T KOG1897|consen 263 GRVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPD 339 (1096)
T ss_pred ccccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCC
Confidence 3456788888999999987665554 4443322 11233455556777788777 578888766555555443221
Q ss_pred -------eeEeccCCCcEEEEeecccC--CCcEEEEEe---cCCeEEEEECCCCCce---EeecCCCCeEEEE-------
Q 001403 470 -------TYSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGAR---VDYDAPGLGCTRM------- 527 (1084)
Q Consensus 470 -------~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s---~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~------- 527 (1084)
+.++. .-+||..++..-.. ....+++++ .||++|+..-.-+-.. ..+.+ -..++.+
T Consensus 340 ~gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~ 417 (1096)
T KOG1897|consen 340 VGSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDEN 417 (1096)
T ss_pred CCchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeecccccc
Confidence 12222 33577777764332 233455543 4788887743211110 01111 0111111
Q ss_pred ----------------------------EEcCCCCEEEEEeeCCCC-----CeeEEEecCCCceEeeeeeccccccCceE
Q 001403 528 ----------------------------AYSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVS 574 (1084)
Q Consensus 528 ----------------------------~~s~d~~~l~~~~~~~~~-----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~ 574 (1084)
.|+.+.+.+++....++. ...|++++-. .....+... ..++
T Consensus 418 ~d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~t 491 (1096)
T KOG1897|consen 418 YDNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKIT 491 (1096)
T ss_pred CCcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceE
Confidence 122222333322221110 1113333322 011111111 2334
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC--C----CEEEEEECCCeEEEEEc-CCCC
Q 001403 575 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILET-PESN 647 (1084)
Q Consensus 575 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--~----~~l~~~~~dg~i~iwd~-~~~~ 647 (1084)
....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|- + +++++|..+..+.+.-. +...
T Consensus 492 i~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~ 570 (1096)
T KOG1897|consen 492 IGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLI 570 (1096)
T ss_pred EEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcc
Confidence 34444455677777777777777776655 333322233345888888873 2 26788877655544432 2222
Q ss_pred eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc
Q 001403 648 SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN 727 (1084)
Q Consensus 648 ~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~ 727 (1084)
.+.........+ |. ++.+... ..|..++.++..||.+.-+-++............. -...
T Consensus 571 ~~~~~~l~~~~i------PR-----------SIl~~~~-e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~--lGt~ 630 (1096)
T KOG1897|consen 571 LITHEQLSGEII------PR-----------SILLTTF-EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT--LGTQ 630 (1096)
T ss_pred eeeeeccCCCcc------ch-----------heeeEEe-eccceEEEEEcCCceEEEEEEEcccceEccccccc--cCCC
Confidence 221111100000 00 1111000 23477888888888877666553322211111000 0223
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
++.--.|+..++.-+.+.+|.=..+|..+.. .++ ....++...+-.+ +.-..-..
T Consensus 631 P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~k--------------Lv~--------spls~kev~~~c~---f~s~a~~d 685 (1096)
T KOG1897|consen 631 PISLRTFSSKSRTAVFALSDRPTVIYSSNGK--------------LVY--------SPLSLKEVNHMCP---FNSDAYPD 685 (1096)
T ss_pred CcEEEEEeeCCceEEEEeCCCCEEEEecCCc--------------EEE--------eccchHHhhhhcc---cccccCCc
Confidence 4444455555544444444433333332110 011 1111111011111 11111234
Q ss_pred EEEEEeCCeEEEEEcCCcee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeC-----------C---CeEEEEEcCCceee
Q 001403 808 YLFSASGGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMD-----------D---STILIYNARSSEVI 871 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~-----------d---g~i~iwd~~~~~~~ 871 (1084)
.+++++.+.+++.-++.-+. ++++. -......+++.+ ....+++.+. . ..++++|-.+-+.+
T Consensus 686 ~l~~~~~~~l~i~tid~iqkl~irtvp-l~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl 763 (1096)
T KOG1897|consen 686 SLASANGGALTIGTIDEIQKLHIRTVP-LGESPRRICYQE-SSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVL 763 (1096)
T ss_pred eEEEecCCceEEEEecchhhcceeeec-CCCChhheEecc-cceEEEEEecccccchhhcCCcceEEEEEEecCCceeEE
Confidence 57777777777776654332 23322 233455566665 3444444322 1 14677776665544
Q ss_pred eeec--cc--ccCEEEEEEcCC-CCEEEEEeC----------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE
Q 001403 872 SKLE--GH--SKRVTGLVFSDA-LNILVSSGG----------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 872 ~~l~--~h--~~~V~~l~~spd-~~~l~s~s~----------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
...+ .. .-.|.++.|..| +.+++.|.. .|.|.|+.+..+... ..+....- .+.+.++..
T Consensus 764 ~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L--~~v~e~~v----~Gav~aL~~ 837 (1096)
T KOG1897|consen 764 SSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSL--ELVAETVV----KGAVYALVE 837 (1096)
T ss_pred eeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCce--eeeeeeee----ccceeehhh
Confidence 3322 11 123555668887 777877753 467788877762211 11111100 012222211
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeEEecccccc
Q 001403 937 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQCRILSTAYL 1014 (1084)
Q Consensus 937 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~--~~~~~~~~~~~~~~ 1014 (1084)
-+|+ +++|-+..|++|++.+.+.++. ...|..++..+...-.|..+++|.-=++|.+-..+ .|.+.-. +..+.
T Consensus 838 -fngk-llA~In~~vrLye~t~~~eLr~-e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~ev--ArD~~ 912 (1096)
T KOG1897|consen 838 -FNGK-LLAGINQSVRLYEWTTERELRI-ECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEV--ARDYN 912 (1096)
T ss_pred -hCCe-EEEecCcEEEEEEccccceehh-hhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEe--ehhhC
Confidence 2344 4456677899999998866665 55678899999999999999999887887775544 4434311 11222
Q ss_pred CCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 1015 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 1015 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
+. |..++.+- |+..++.+..+|++++-.......+
T Consensus 913 p~-------Wmtaveil--~~d~ylgae~~gNlf~v~~d~~~~t 947 (1096)
T KOG1897|consen 913 PN-------WMTAVEIL--DDDTYLGAENSGNLFTVRKDSDATT 947 (1096)
T ss_pred cc-------ceeeEEEe--cCceEEeecccccEEEEEecCCCCc
Confidence 22 22333333 4678888899999999988654433
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.93 E-value=5.2e-09 Score=125.06 Aligned_cols=225 Identities=13% Similarity=0.176 Sum_probs=166.8
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEecc-CCCc
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP 479 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~-h~~~ 479 (1084)
+.++....++...-|..+.+.. .+..+-..|.++.=+|... +.+||+.||.|++|....+..+..++. -...
T Consensus 2181 ~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~ 2253 (2439)
T KOG1064|consen 2181 NRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR 2253 (2439)
T ss_pred ccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcch
Confidence 3444444455555555544322 2334556788888888877 789999999999999999988877743 2377
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|+.+.| +.+|+.+..+..||.+.+|... .+.......|......+.|-. ..+++.+.+.+ ++.+.+||..-...
T Consensus 2254 vtr~~f--~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~~ 2327 (2439)
T KOG1064|consen 2254 VTRSRF--NHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPPM 2327 (2439)
T ss_pred hhhhhh--cccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCcc
Confidence 888888 4467789999999999999877 455566677777777777766 66777766555 67799999653211
Q ss_pred -eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeE
Q 001403 560 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 560 -~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
-..-..|. +.++++++.|....+++|+.+|.|++||++..++++.++. +. ...++++++..|.+
T Consensus 2328 ~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~i 2392 (2439)
T KOG1064|consen 2328 NSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGNI 2392 (2439)
T ss_pred cceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccce
Confidence 11124555 8899999999999999999999999999998887777653 22 46689999999999
Q ss_pred EEEEcCCCCeeeecc
Q 001403 639 KILETPESNSVDAAG 653 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~ 653 (1084)
+||++.....+..+.
T Consensus 2393 kIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2393 KIWRLSEFGLLHTFP 2407 (2439)
T ss_pred EEEEccccchhhcCc
Confidence 999999876665544
No 286
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=98.92 E-value=4.2e-09 Score=125.82 Aligned_cols=191 Identities=10% Similarity=0.172 Sum_probs=149.9
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
+-..+.++.-+| ...+.++|+.||.|++|....++.+..++. -...|+.+.|+.+|+....+..||.+.+|.+..
T Consensus 2207 ~v~~v~r~~sHp-~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--- 2282 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP-SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--- 2282 (2439)
T ss_pred ccCceeeecCCC-CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC---
Confidence 345677888888 677889999999999999988887766642 237899999999999999999999999999984
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEE-E---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
+.+.....|.. ....+.|-. ..+++ | .++.+.+||.--.....-....|.+.++++++.|..+.|++|
T Consensus 2283 ---k~~~s~qchnk---~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisg 2354 (2439)
T KOG1064|consen 2283 ---KPYTSWQCHNK---ALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISG 2354 (2439)
T ss_pred ---cceeccccCCc---cccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEec
Confidence 23334444443 456666655 55565 2 456899999854333333336899999999999999999999
Q ss_pred eCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 989 FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 989 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+.+|.|++||+...+++..+.. ++ ...+|++|+..|.++||++++.+-
T Consensus 2355 gr~G~v~l~D~rqrql~h~~~~-------------------~~--~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA-------------------LD--TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred CCcCcEEEeehHHHHHHHHhhh-------------------hh--hhheeeccCcccceEEEEccccch
Confidence 9999999999999988866661 22 146999999999999999987753
No 287
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.90 E-value=9.3e-09 Score=108.28 Aligned_cols=297 Identities=10% Similarity=0.104 Sum_probs=190.9
Q ss_pred CCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccce----eeeecCCCCCeEEEE
Q 001403 320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK----TALVRDPGVSVNRVV 395 (1084)
Q Consensus 320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~----~~~~~~h~~~V~~v~ 395 (1084)
.++..-.+..+.||.+.|.+++--.+..-+++++.| ++|++|.+........ .-.+..|+.+|..+.
T Consensus 721 ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkD---------KTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~ig 791 (1034)
T KOG4190|consen 721 LNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKD---------KTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIG 791 (1034)
T ss_pred cccceeeeecccCcHHHhHHHHhcccccceeeccCC---------ceEEEEEeccccCccccceeeeEhhhccCccccee
Confidence 344456677889999999999888888888898888 9999999964322111 113567999999999
Q ss_pred EcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCceeeEec
Q 001403 396 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE 474 (1084)
Q Consensus 396 fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~ 474 (1084)
|-.|-++++++ ||-|.+||.--|..+.+...-..| +.+..+.--++ .+.++++.++...+|+++|.+.+.-..+++
T Consensus 792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k 868 (1034)
T KOG4190|consen 792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK 868 (1034)
T ss_pred eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence 99999999876 777999999887766543222222 22333333333 344355556889999999999888766664
Q ss_pred -----cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 475 -----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 475 -----~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
+....+.+++..+ .|+.++.+-.+|.|.+.|.+++..+..+.........++ .|..+.++.... +..+
T Consensus 869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl 941 (1034)
T KOG4190|consen 869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL 941 (1034)
T ss_pred eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence 3345678888854 567999999999999999998876665544443333333 244455554433 4446
Q ss_pred EE-ecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC----CeEEEEEcCCCCCCCcceEEEec
Q 001403 550 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK----VQLLTTIDAGGGLPENPRICFNK 624 (1084)
Q Consensus 550 ~~-wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~~v~~v~~s~ 624 (1084)
.+ |....|......+... .+..- ...-|..++++.....+.+|.-.. ...+..+.........++++.-|
T Consensus 942 aVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen 942 AVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred EeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence 66 8776665544433222 11111 112355677777666777774211 12223333333333456777777
Q ss_pred CCCEEEEEECCCeEEE
Q 001403 625 NGTLLAVIANENRIKI 640 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~i 640 (1084)
-..-+..|...|.|.+
T Consensus 1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ccchhhccCCCCceee
Confidence 6666777777787765
No 288
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.89 E-value=2.3e-06 Score=96.82 Aligned_cols=216 Identities=10% Similarity=0.065 Sum_probs=126.3
Q ss_pred EEEEeCCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc----
Q 001403 809 LFSASGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---- 879 (1084)
Q Consensus 809 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~---- 879 (1084)
++...++.+..+|..+|+.+.......... .+.+.. ++ .++.++.+|.+..+|..+|+.+........
T Consensus 164 ~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~ 240 (394)
T PRK11138 164 LVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGAT 240 (394)
T ss_pred EEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCcc
Confidence 333335677777777777776654321110 111222 23 466678899999999999987765431100
Q ss_pred ---CEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEE
Q 001403 880 ---RVTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 954 (1084)
Q Consensus 880 ---~V~~l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vw 954 (1084)
....+.-+| .+..+..++.+|.+..+|..+|+..-...+ +. ...+.. .++..++...++.+..+
T Consensus 241 ~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~~------~~~~~~-~~~~vy~~~~~g~l~al 309 (394)
T PRK11138 241 EIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----GS------VNDFAV-DGGRIYLVDQNDRVYAL 309 (394)
T ss_pred chhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----CC------ccCcEE-ECCEEEEEcCCCeEEEE
Confidence 011111122 245666777899999999999874332211 11 111222 23444455688999999
Q ss_pred EcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 955 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 955 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
|..+|+.+............+... .+.+|+.++.||.+.+.|..+|+.+.+.... ...+.+.-+ ..
T Consensus 310 d~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~--------~~~~~s~P~-~~--- 375 (394)
T PRK11138 310 DTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD--------SSGFLSEPV-VA--- 375 (394)
T ss_pred ECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC--------CCcceeCCE-EE---
Confidence 999998765422111111222222 2457788899999999999999998776521 011221101 12
Q ss_pred CCEEEEEeCCCcEEEEcC
Q 001403 1035 PTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~ 1052 (1084)
++.|.+++.||.|+.+++
T Consensus 376 ~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 DDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCceEEEEeC
Confidence 458999999999998875
No 289
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.88 E-value=1.1e-07 Score=93.34 Aligned_cols=204 Identities=16% Similarity=0.102 Sum_probs=137.0
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCce
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR 469 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~ 469 (1084)
..++.|++.|..++++..+|.+.+-+..... +.....++.|.-..+-..|+..... ++.+||.|+.+..||++ .++.
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~ 201 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTF 201 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcce
Confidence 4578899999999999999998855443332 3333367899999999999877665 89999999999999998 4455
Q ss_pred eeE-eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC--EEEEEeeCCCCC
Q 001403 470 TYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR--RLFSCGTSKEGE 546 (1084)
Q Consensus 470 ~~~-~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~--~l~~~~~~~~~~ 546 (1084)
+.. .+.|...|.++.-++. .+.++++|+.|-.|++||.++......-..-.+.|+.+..+|.-. .|++|-.++
T Consensus 202 i~~n~kvH~~GV~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G--- 277 (339)
T KOG0280|consen 202 IWHNSKVHTSGVVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG--- 277 (339)
T ss_pred eeecceeeecceEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC---
Confidence 543 5678889999876643 668999999999999999997766555555567899999988543 344433211
Q ss_pred eeEEEecCCC--ceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEE-EEECCCC
Q 001403 547 SFLVEWNESE--GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV 602 (1084)
Q Consensus 547 ~~i~~wd~~~--~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~-iwd~~~~ 602 (1084)
..+-+.+. .+....+..+..|..-...-.|......+++++ .|+.++ +|-..++
T Consensus 278 --~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 278 --AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred --ceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 34444333 221122222322224445555543345677754 566644 6654443
No 290
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.88 E-value=1.2e-06 Score=98.35 Aligned_cols=212 Identities=9% Similarity=0.013 Sum_probs=132.4
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEeCC---CeEEEEEcCCceeeeeecccccCEEEEEEcCCCC
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~d---g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
.|.+-|... ...+.+.... .+....||| |++ .++..+.+ ..|+++|+.+++...... ..+......|||||+
T Consensus 170 ~l~~~d~dg-~~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~ 245 (419)
T PRK04043 170 NIVLADYTL-TYQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS 245 (419)
T ss_pred eEEEECCCC-CceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence 355545543 3334343333 678899999 676 46654433 479999999887544333 445566788999998
Q ss_pred EEEEE-eC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceeeE
Q 001403 892 ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ 964 (1084)
Q Consensus 892 ~l~s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~i~vwd~~~~~~~~~ 964 (1084)
.|+.. +. +..|.++|+.+++... +....+ ......|+|||+.|+..++. .|+++|+.+++....
T Consensus 246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl 316 (419)
T PRK04043 246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV 316 (419)
T ss_pred EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence 77644 33 3568888988765322 222222 12356899999998885443 699999988876544
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCC---------CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 965 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 965 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
...+. ....|||||++|+..+.. ..|.+.|+.++... .+... + . ....+|+| ||
T Consensus 317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-----~---~---~~~p~~SP-DG 379 (419)
T PRK04043 317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-----G---V---NQFPRFSS-DG 379 (419)
T ss_pred ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-----C---C---cCCeEECC-CC
Confidence 33222 124899999998877654 26888899888653 23211 0 0 01257999 58
Q ss_pred CEEEEEeCC-CcEEEEcCCCCCC
Q 001403 1036 TQFAVGLTN-GEVYVIEPNEPGD 1057 (1084)
Q Consensus 1036 ~~l~~~~~d-g~v~vw~~~~~~~ 1057 (1084)
..|+....+ |.-.++-+.-.+.
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 877776654 4444555544553
No 291
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.86 E-value=1.5e-06 Score=89.29 Aligned_cols=183 Identities=15% Similarity=0.174 Sum_probs=128.8
Q ss_pred EEEecCCCCEEEEEe------CCeEEEEEcC-CceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe----------------
Q 001403 799 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---------------- 855 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---------------- 855 (1084)
.-+||+||++|.+.. .|.|-|||.. +.+.+.++..+.-..-.+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 468999999999874 3779999999 7888889988887778899999 887777652
Q ss_pred --CCCeEEEEEcCCceeeee--e--cccccCEEEEEEcCCCCEEEEEeCCCc-------EEEEeCCCCceeeeeeeecCC
Q 001403 856 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDAQ-------IFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 856 --~dg~i~iwd~~~~~~~~~--l--~~h~~~V~~l~~spd~~~l~s~s~dg~-------I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++-.=..|. |-+++-... . ..+....
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~--~~~~~p~ 209 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--L--RLLPAPE 209 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--c--eeccCCh
Confidence 223566678888988866 5 348889999999999877665433331 334433331 0 1111111
Q ss_pred C-CccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 923 G-VMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 923 ~-~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
. -....+.+-+++++++|.+++++ ..+.+.+||..+++.+.... -..+..++-.+++ ++++.+.
T Consensus 210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence 1 11222468899999999999885 56789999999999887643 3456677777777 6666543
No 292
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.79 E-value=5.7e-08 Score=106.32 Aligned_cols=227 Identities=16% Similarity=0.278 Sum_probs=157.3
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..-.||.+.........-++.||...|+.+-|.|. -..||+++.|..|..||+.+.. +.+.........-..++|+-
T Consensus 91 qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwny 168 (1081)
T KOG0309|consen 91 QKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNY 168 (1081)
T ss_pred chhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecc
Confidence 44568988765554444568999999999999984 5688999999999999998865 33334444445677889987
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-cCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPG 521 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~ 521 (1084)
... .+.+.+..+.|.+||.+.| .++..+++|...|+.+.|..... ..+.+.+.||+|+.||.+........ ....
T Consensus 169 k~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~ 245 (1081)
T KOG0309|consen 169 KDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTN 245 (1081)
T ss_pred cCc--chhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceecccc
Confidence 666 3555666778999999866 56788999999999998854322 46889999999999999865443322 2233
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEE---------ecCCC-ceEeeeeeccccccCceEEEEEcCC----------
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA---------- 581 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~---------- 581 (1084)
.++..-.+.|-|.-.+.--.. |.+.+.+ |+..+ .+.++.|.||. +.|....|-..
T Consensus 246 ~piw~~r~~Pfg~g~~~mp~~--G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~r 320 (1081)
T KOG0309|consen 246 FPIWRGRYLPFGEGYCIMPMV--GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSR 320 (1081)
T ss_pred CcceeccccccCceeEecccc--CCeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCcc
Confidence 466666677755543332211 1223333 33333 45788899988 66655444221
Q ss_pred CCEEEEEECCCcEEEEECCC
Q 001403 582 KDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.-.|++-+.|.++++|-+.+
T Consensus 321 dfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 321 DFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ceeEEEeecCCceEeeeccH
Confidence 23789999999999998764
No 293
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.78 E-value=8.8e-07 Score=98.66 Aligned_cols=338 Identities=15% Similarity=0.122 Sum_probs=187.4
Q ss_pred EEEEEcCCCCEEEEEe----CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 392 NRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 392 ~~v~fspdg~~las~~----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
+-..|+|...++|+++ ..|.|.||- ++|+..+.. +. .-.+++++|+|..- +|+.|-.-|.+.+|...+.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~---P~hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TY---PVHATSLCWHPEEF--VLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-cc---ceehhhhccChHHH--HHhhccccceeEEEecCCc
Confidence 3457899888998885 357788884 455533211 22 22367799999876 7888888999999997777
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CC---C-CeEEEEEEcCCCCEEE----
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--AP---G-LGCTRMAYSANGRRLF---- 537 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~---~-~~i~~~~~s~d~~~l~---- 537 (1084)
+.......|..+|..+.|+ ++|..++++..-|.|.+|.++..+...... .| . -...+...++++.-++
T Consensus 92 e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laK 169 (1416)
T KOG3617|consen 92 ETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAK 169 (1416)
T ss_pred eeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhh
Confidence 7666667899999999995 577899999999999999887443322211 11 1 1334556667644322
Q ss_pred -EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 538 -SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 538 -~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+.+.+..+-....-|..++.. +.. . -.-.|+|..++.++.+|+|+--|- .|+..........
T Consensus 170 aaVtgDe~alD~~fnwk~~~a~--rs~----------~-ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--- 232 (1416)
T KOG3617|consen 170 AAVTGDESALDEPFNWKESLAE--RSD----------E-KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--- 232 (1416)
T ss_pred hhccCchhhhcccccCccchhh--ccc----------c-ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch---
Confidence 111111110112222211110 000 0 013478888999999999988774 4555555544322
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
..+-|.+...-+++...+-++.++-.. +|..-... .+.++- -.|.. .|. +++
T Consensus 233 -vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~--------~vk~sg-----k~Ggr------------qGg-iA~ 285 (1416)
T KOG3617|consen 233 -VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERC--------AVKVSG-----KLGGR------------QGG-IAC 285 (1416)
T ss_pred -HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhh--------hhhhcc-----ccCCc------------cCc-ccc
Confidence 234455544555555444444443322 22110000 000000 00000 011 333
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
+...|.++- ...+.+ .....+.+++++..+..+.++...|.+.+|.-....+..+ ...-.|
T Consensus 286 sEssGvLr~--------~eKyg~-----e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~------p~~d~w 346 (1416)
T KOG3617|consen 286 SESSGVLRK--------SEKYGL-----ELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGD------PTIDVW 346 (1416)
T ss_pred ccccccccC--------Ccchhh-----hcCCceEEEEEeccceEEEecccCCcEEEeeecCccccCC------CCcceE
Confidence 333331110 111111 1446789999999999999999999999997433322111 123455
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
.+.+.. ...+.|+.+.|.|--..+++
T Consensus 347 ~l~~~~----------e~~g~I~~i~Wg~~k~~~av 372 (1416)
T KOG3617|consen 347 TLNGKR----------ESLGKISLIRWGPIKSTAAV 372 (1416)
T ss_pred EecCch----------hhccceEEEEeccccchhhh
Confidence 544433 24556777777774444443
No 294
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.76 E-value=1e-05 Score=91.70 Aligned_cols=153 Identities=19% Similarity=0.115 Sum_probs=92.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCC--cEE-----EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~--~v~-----~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
.++.++.++.+.-+|.++|+.+-+...... ... .+.-.+.-++..++.++.+|.+..+|.++++.........
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788888999999988765532210 000 0000011123467788899999999999998877765544
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc--CceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
....+... .++ .++.+.. ++.++.+|..+|+.+..+....... ....+... .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v-~~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVV-SDG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEE-ECC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 32222222 133 4444432 6679999999999987775432000 00001111 1346777888999999999
Q ss_pred CCCeEEEEEc
Q 001403 600 NKVQLLTTID 609 (1084)
Q Consensus 600 ~~~~~~~~~~ 609 (1084)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988776543
No 295
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.76 E-value=6.2e-06 Score=81.83 Aligned_cols=247 Identities=11% Similarity=0.109 Sum_probs=135.0
Q ss_pred eEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 338 MSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 338 ~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
|.++.++||+.||.- ++..|.|-.....-.. -+..+.++..-.=..++||||+..||.+...|+|+++
T Consensus 1 W~~~~~~~Gk~lAi~----------qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vf 70 (282)
T PF15492_consen 1 WHLALSSDGKLLAIL----------QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVF 70 (282)
T ss_pred CceeecCCCcEEEEE----------eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEE
Confidence 457889999999983 1245555544322111 1112233444456679999999999999999999999
Q ss_pred EccCCcccc--ceeee-ecccccEeEEEeecCC-----CcEEEEEEeCCCcEEEEECCC-----CceeeEec--c-CCCc
Q 001403 416 AYHGGSDAR--QQLEI-DAHVGNVNDLAFSAPC-----KQISVITCGDDKTIKVWDAVT-----GSRTYSFE--G-HGAP 479 (1084)
Q Consensus 416 d~~~~~~~~--~~~~l-~~h~~~V~~l~~s~d~-----~~l~l~s~~~d~~i~vwd~~~-----g~~~~~~~--~-h~~~ 479 (1084)
|+.+.+... ..... ..-...|..+.|.+-. .. .|+.-..+|.++=+-+.. .+..+++. . +...
T Consensus 71 dl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~-ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~G 149 (282)
T PF15492_consen 71 DLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSY-ELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHG 149 (282)
T ss_pred ecccceeEEcCcccccCCccccceeeeEeeccccccccce-eEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCc
Confidence 998754321 10001 1123467777775532 11 244455577776665432 23334442 2 4678
Q ss_pred EEEEeecccCCCcEEEEEecCCe-EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC----CeeEEEecC
Q 001403 480 VYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG----ESFLVEWNE 554 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~----~~~i~~wd~ 554 (1084)
|.++.+++.. ++|+.|+.... -..+ ......+++-..-.+..+.......++. ..+..+|.+
T Consensus 150 i~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 150 INSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred eeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 9999997654 56666553221 0000 0111122222221221111111000000 001223333
Q ss_pred CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 555 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
-+.+.... .+ .....|..+..||||+.|++...+|.|.+|++.+-++......+
T Consensus 217 ~~~~~fs~-~~--~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 217 PSFKFFSR-QG--QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred cceeeeec-cc--cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 32222111 11 11367999999999999999999999999999987777666543
No 296
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.75 E-value=8.9e-08 Score=98.40 Aligned_cols=160 Identities=9% Similarity=0.094 Sum_probs=115.3
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----eeeeecccccCEEEEEEcCCCCEEEE---EeCCCcEEEEeCCCC
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGW 910 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~----~~~~l~~h~~~V~~l~~spd~~~l~s---~s~dg~I~iwd~~~~ 910 (1084)
...+..++ ++++||++..+....++++.... ++..... ...-+++.|..+...... ++....+.+|....+
T Consensus 65 ~~~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence 34455667 88899999888887777776433 2222221 122334444444444433 445556666766643
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
. ....-||.. .++.+++|||+++|+++ .|..|++-.+..-..+..+..||..-|..++.-++ ..|+++|
T Consensus 143 ~------~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~s 212 (390)
T KOG3914|consen 143 R------CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGS 212 (390)
T ss_pred C------cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecC
Confidence 2 233456665 89999999999999997 78999999998888888888899999999998765 4589999
Q ss_pred CCCcEEEEEcCCCceeEEec
Q 001403 990 VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.|++|++||+.+|+.+..+.
T Consensus 213 GD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 213 GDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred CCCcEEEEecccCCcccccc
Confidence 99999999999999876554
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.74 E-value=1.3e-07 Score=97.34 Aligned_cols=161 Identities=18% Similarity=0.124 Sum_probs=108.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---cceeeeecCCCCCeEEEEEcCCCCEEEEE---eCC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---LFKTALVRDPGVSVNRVVWSPDGSLLGVA---YSK 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---~~~~~~~~~h~~~V~~v~fspdg~~las~---~~d 409 (1084)
.++.+..+|+|++||++..+ +...++++..... ....... ...-+++.|-.+......+ ++.
T Consensus 64 a~~~~~~s~~~~llAv~~~~---------K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkagD~ 131 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVATSS---------KQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAGDV 131 (390)
T ss_pred cccccccCCCceEEEEEeCC---------CceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecCCc
Confidence 45566778888888886433 4444444432221 1111111 1233344454444555544 444
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~ 488 (1084)
..+.+|....+.+. .+-||-..++.++|+||++ +++++..|..|+|-....-..+..+ -||..-|..++..+
T Consensus 132 ~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~- 204 (390)
T KOG3914|consen 132 YSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD- 204 (390)
T ss_pred eeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-
Confidence 55666666654332 3559999999999999999 8999999999999877666666555 67999999999743
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
+..|+++|.|+++++||+.+++.+..+
T Consensus 205 --~~~LlS~sGD~tlr~Wd~~sgk~L~t~ 231 (390)
T KOG3914|consen 205 --NYLLLSGSGDKTLRLWDITSGKLLDTC 231 (390)
T ss_pred --CceeeecCCCCcEEEEecccCCccccc
Confidence 357999999999999999998876544
No 298
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.72 E-value=3.1e-06 Score=88.87 Aligned_cols=223 Identities=13% Similarity=0.134 Sum_probs=139.6
Q ss_pred CCeEEEEEcCCceeEEEEcCC--CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCC
Q 001403 814 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
+|+|..||..+|+.+...... .....+.++. ++..+++++.++.|+.||..+|+.+.+... .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 588999999999998887542 1222222332 345677778999999999999998877664 22211111 22456
Q ss_pred EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCC
Q 001403 892 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS 970 (1084)
Q Consensus 892 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~ 970 (1084)
.++.++.++.|..+|..+|+..-........... .........++..++++ .++.|..+|.++|+.+........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~ 153 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP 153 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence 6677778889999999998865432111111110 12223333347777775 589999999999999887654221
Q ss_pred C---C------EEEEEEccCCCEEEEEeCCCc-EEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEE
Q 001403 971 V---P------ISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 971 ~---~------v~~l~fs~dg~~l~t~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
. . +..-....++ .++.++.+|. +.+ |+.+++.+.+.. ... .... ..+ ++..|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-----~~~-----~~~~---~~~-~~~~l~~ 217 (238)
T PF13360_consen 154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-----ISG-----IYSL---PSV-DGGTLYV 217 (238)
T ss_dssp -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-----SS------ECEC---EEC-CCTEEEE
T ss_pred CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-----CCC-----ccCC---cee-eCCEEEE
Confidence 1 1 1222233345 7777777885 555 999998653222 111 1211 222 3678888
Q ss_pred EeCCCcEEEEcCCCCCCCcc
Q 001403 1041 GLTNGEVYVIEPNEPGDTWA 1060 (1084)
Q Consensus 1041 ~~~dg~v~vw~~~~~~~~~~ 1060 (1084)
++.+|.|..||+...+..|.
T Consensus 218 ~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 218 TSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp EETTTEEEEEETTTTEEEEE
T ss_pred EeCCCEEEEEECCCCCEEeE
Confidence 88999999999988877774
No 299
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.69 E-value=3.1e-07 Score=90.49 Aligned_cols=259 Identities=14% Similarity=0.202 Sum_probs=165.8
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCce-----eEEEEcCCC------------CCeEEEEEcCCCC-cEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK-----TILTIMPPS------------PTATSLAFNPHDN-NVIAI 853 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~-----~~~~~~~~~------------~~i~~l~~s~~d~-~~la~ 853 (1084)
....|+++.|...|.|+++|. +|.|.+|.-+... ....+++|. ..|..+.|-.+.+ ..+..
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 566789999999999999998 6889999865432 223345443 2466777765333 35556
Q ss_pred EeCCCeEEEEEcCCcee-------------------------------------e----e-ee-cccccCEEEEEEcCCC
Q 001403 854 GMDDSTILIYNARSSEV-------------------------------------I----S-KL-EGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~-------------------------------------~----~-~l-~~h~~~V~~l~~spd~ 890 (1084)
.+.|.+|++|.+..... + . .. ..|.-.|.++.|..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 77899999998743200 0 0 01 3467778899999998
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCC--ccCCCCceEEEEccCCCEEEE--EeCCeEEEEEcCCcce-----
Q 001403 891 NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV--MTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTC----- 961 (1084)
Q Consensus 891 ~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~--~~~~~~v~~~~~s~dg~~la~--~~d~~i~vwd~~~~~~----- 961 (1084)
..++++ .|=.|.+|+++-... ...+-....| .....-|++..|+|....+.. ++.|.|++-|++....
T Consensus 185 et~lSa-DdLrINLWnl~i~D~--sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~ 261 (460)
T COG5170 185 ETLLSA-DDLRINLWNLEIIDG--SFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSK 261 (460)
T ss_pred heeeec-cceeeeeccccccCC--ceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCch
Confidence 888876 566799999875321 1111111111 111235789999997654443 6889999999873221
Q ss_pred -eeE---------eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc-eeEEecccccc----CCCCcccceee-
Q 001403 962 -LKQ---------WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE-VQCRILSTAYL----RPTTSCLHVYP- 1025 (1084)
Q Consensus 962 -~~~---------~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~-~~~~~~~~~~~----~~~~~~~~v~~- 1025 (1084)
+.. .+.+-...|..+.||++|+|+++-+. -+|++||+.-.+ .+..+..+..+ ..-...++|+.
T Consensus 262 klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDaifdk 340 (460)
T COG5170 262 KLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAIFDK 340 (460)
T ss_pred hhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccceeee
Confidence 100 11112567889999999999997643 589999988653 44444322111 11112344554
Q ss_pred eEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1026 HAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
..+.|+. |...+++|+..+...++-...++
T Consensus 341 FeisfSg-d~~~v~sgsy~NNfgiyp~~ssg 370 (460)
T COG5170 341 FEISFSG-DDKHVLSGSYSNNFGIYPTDSSG 370 (460)
T ss_pred EEEEecC-CcccccccccccceeeeccccCC
Confidence 6788887 46788888888888887755554
No 300
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.69 E-value=3.9e-05 Score=79.03 Aligned_cols=206 Identities=16% Similarity=0.129 Sum_probs=139.7
Q ss_pred ccEEEecC-CCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCe--EEEEEcCCCCcEEEEEeC-----CCeEEEEEcC
Q 001403 797 VPCFALSK-NDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMD-----DSTILIYNAR 866 (1084)
Q Consensus 797 v~~l~~s~-dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~la~g~~-----dg~i~iwd~~ 866 (1084)
...++.+| .+..++.+- .....+||..+++....+....+.- -.-+||+ ||++|++.-. .|.|-|||..
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECc
Confidence 34678888 455555665 3458999999999988877654432 3578999 8998887644 4799999999
Q ss_pred -CceeeeeecccccCEEEEEEcCCCCEEEEEeC------------------CCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 867 -SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 867 -~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
+.+.+.++..|.-.--.+.+.|||+.|+.+-. +-.+..-|..+|+......+.. .-|.
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~-~~~~-- 162 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP-DLHQ-- 162 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc-cccc--
Confidence 56778888877766777899999988876521 1234555666665444322211 1122
Q ss_pred CCCceEEEEccCCCEEEEEe-CC-------eEEEEEcCCcceeeEeec------CCCCCEEEEEEccCCCEEEE-EeCCC
Q 001403 928 APSETHIQFHKDQTRFLLVH-ET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFT-SFVDG 992 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~-d~-------~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t-~~~dg 992 (1084)
..+..+++.++|..++... .+ -|.+++-. +.+..+.. .-...+-+|+++.+|.++++ +-.-|
T Consensus 163 -lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg 239 (305)
T PF07433_consen 163 -LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG 239 (305)
T ss_pred -cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence 2699999999999877641 11 24455443 22222111 12578999999999987754 44668
Q ss_pred cEEEEEcCCCceeEEec
Q 001403 993 TLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 993 ~i~vwd~~~~~~~~~~~ 1009 (1084)
.+.+||..+|+++....
T Consensus 240 ~~~~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 240 RVAVWDAATGRLLGSVP 256 (305)
T ss_pred EEEEEECCCCCEeeccc
Confidence 89999999999985554
No 301
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.67 E-value=4e-07 Score=89.72 Aligned_cols=175 Identities=19% Similarity=0.241 Sum_probs=101.6
Q ss_pred CCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCce---eEEEEcCCC-----CCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 792 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
.|...+.++.|..|.+.+.++.+=.|-+|+++-.. .+..+++|. .-|++..|+|....++...+..|.|++-
T Consensus 170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~ 249 (460)
T COG5170 170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN 249 (460)
T ss_pred cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence 47888999999999999999999999999986322 233344443 3467888888666777778888888888
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|++...+- -. ...+.--..|+. |. ..+.+.. ..|..+.|+++|+++
T Consensus 250 DlRq~alc--------------dn--~~klfe~~~D~v----~~-----------~ff~eiv---sSISD~kFs~ngryI 295 (460)
T COG5170 250 DLRQSALC--------------DN--SKKLFELTIDGV----DV-----------DFFEEIV---SSISDFKFSDNGRYI 295 (460)
T ss_pred hhhhhhhc--------------cC--chhhhhhccCcc----cc-----------hhHHHHh---hhhcceEEcCCCcEE
Confidence 87632110 00 000000000000 00 0000000 134555555555555
Q ss_pred EEEeCCeEEEEEcCCcc-eeeEeecCC------------CCCE---EEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 944 LLVHETHLAIYEAEELT-CLKQWFPIS------------SVPI---SQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~-~~~~~~~~h------------~~~v---~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
++-.--+|++||+...+ ++.+ .+-| +..| ..+.||.|.+.+.+|+.....-++-+.+
T Consensus 296 lsRdyltvkiwDvnm~k~pikT-i~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~s 368 (460)
T COG5170 296 LSRDYLTVKIWDVNMAKNPIKT-IPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTDS 368 (460)
T ss_pred EEeccceEEEEecccccCCcee-echHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecccc
Confidence 55444555555554322 2222 1111 2233 3578999999999999888888887443
No 302
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.67 E-value=1.5e-05 Score=82.85 Aligned_cols=232 Identities=14% Similarity=0.151 Sum_probs=143.3
Q ss_pred CeeecCCCCCccccccCcCC---CCCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 772 PRLYQPRHGPQFMVNDTTDS---NSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~---~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
+.+||..+-.......++.. ........+++|.||+++.+.. ..+|.|.|+..++.+.++..+. . . +.+ |
T Consensus 69 v~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG-C-~-~iy-P 144 (342)
T PF06433_consen 69 VEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG-C-W-LIY-P 144 (342)
T ss_dssp EEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS-E-E-EEE-E
T ss_pred EEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC-E-E-EEE-e
Confidence 44555555544444444321 1123445679999999999987 4789999999999998887432 1 1 122 2
Q ss_pred CCCcEEEEEeCCCeEEEEEcC-Cceeeeee----cccccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeee
Q 001403 846 HDNNVIAIGMDDSTILIYNAR-SSEVISKL----EGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~-~~~~~~~l----~~h~~~V-~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
...+-+.+.+.||++.-..+. .|+...+. ..-.+++ ..-+++..+..++..+.+|.|+--|+............
T Consensus 145 ~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~ 224 (342)
T PF06433_consen 145 SGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWS 224 (342)
T ss_dssp EETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEE
T ss_pred cCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCccc
Confidence 133457788889999999888 45543221 1111222 23344555566666789999999999887654444333
Q ss_pred cCCCCc---c-CCCCceEEEEccCCCEEEE----EeCC-------eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-
Q 001403 920 TPDGVM---T-LAPSETHIQFHKDQTRFLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR- 983 (1084)
Q Consensus 920 ~~~~~~---~-~~~~v~~~~~s~dg~~la~----~~d~-------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~- 983 (1084)
...... . -.+.-.-+++++....|.+ +.++ .|-++|+.+++.+.++... .++.+|..|.|.+
T Consensus 225 ~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 225 LLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKP 302 (342)
T ss_dssp SS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-
T ss_pred ccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCc
Confidence 221110 0 0134567889887766665 2222 4888899999999987654 3688999999876
Q ss_pred EEEEE-eCCCcEEEEEcCCCceeEEec
Q 001403 984 MVFTS-FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 984 ~l~t~-~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+|++. ..++.+.+||..+|+.+.++.
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 55444 457899999999999998887
No 303
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.67 E-value=2.5e-05 Score=82.15 Aligned_cols=221 Identities=18% Similarity=0.150 Sum_probs=141.7
Q ss_pred EEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEee-cCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 393 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 393 ~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
+++|.+ +|.++++-...+.|..|+..+++... +... . ...+++. +++. ++.+... .+.++|..+++..
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~-~-~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~ 73 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP-G-PNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT 73 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS-S-EEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC-C-CceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence 578888 67777776678999999999875321 2112 2 6677777 6655 4445544 4566699998654
Q ss_pred eEecc-----CCCcEEEEeecccCCCcEEEEEecC--------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 471 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 471 ~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
..... .....+.+++ +++|.+.++.... |.|..++.+ ++ .......-.....++|+||++.|+
T Consensus 74 ~~~~~~~~~~~~~~~ND~~v--d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 74 VLADLPDGGVPFNRPNDVAV--DPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred EEeeccCCCcccCCCceEEE--cCCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence 33332 3456778888 4567777766543 456666655 23 222222334567899999999887
Q ss_pred EEeeCCCCCeeEEEecCCCce--E--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~--~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
.+.. ..+.|..+++.... . ...+.......+....+++..+|+..++....+.|.+++.. |+.+..+.....
T Consensus 150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~ 225 (246)
T PF08450_consen 150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVP 225 (246)
T ss_dssp EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSS
T ss_pred eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCC
Confidence 6543 25568888875321 1 12222112111347889999999988888889999999987 888888886633
Q ss_pred CCCcceEEEe-cCCCEEEEEE
Q 001403 614 LPENPRICFN-KNGTLLAVIA 633 (1084)
Q Consensus 614 ~~~v~~v~~s-~~~~~l~~~~ 633 (1084)
.+.+++|. ++.+.|++.+
T Consensus 226 --~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 --RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp --SEEEEEEESTTSSEEEEEE
T ss_pred --CEEEEEEECCCCCEEEEEe
Confidence 58899995 6767666654
No 304
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.66 E-value=1.7e-07 Score=102.81 Aligned_cols=294 Identities=13% Similarity=0.153 Sum_probs=186.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCc-cccceeeeeccc--ccEeEEEeecCCCcE-EEEEEeCCCcEEEEE
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHV--GNVNDLAFSAPCKQI-SVITCGDDKTIKVWD 463 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~--~~V~~l~~s~d~~~l-~l~s~~~d~~i~vwd 463 (1084)
.+++.++..+|.|+-+|.++.-| +.+-|+...- ..+ .-.|. -.|-.+.|+|..... .+++.+ ...-.+|+
T Consensus 24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr----~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwn 97 (1081)
T KOG0309|consen 24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPR----WLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWN 97 (1081)
T ss_pred cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCce----eeeccCcchhcceecccCCCCceeEEecC-cchhhhhh
Confidence 35788899999999999999988 6666776432 222 11232 246778898875432 455555 45567899
Q ss_pred CCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEE
Q 001403 464 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 464 ~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+... ..-..+.+|...|+.+.|++.. ...+++++.|-.+..||+++..... .+..-......++|+-....+.+.
T Consensus 98 lA~ss~~aIef~lhghsraitd~n~~~q~-pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlas 176 (1081)
T KOG0309|consen 98 LAKSSSNAIEFVLHGHSRAITDINFNPQH-PDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLAS 176 (1081)
T ss_pred hhcCCccceEEEEecCccceeccccCCCC-CcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhh
Confidence 8633 3345678899999999998753 3689999999999999998865433 333334455677887644444333
Q ss_pred eeCCCCCeeEEEecCCCc-eEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 540 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~-~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
+. ...|.+||.+.| .++..+++|. ..|..+.|..- ...+.+.+.||+|+.||............... ..+
T Consensus 177 sh----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi 248 (1081)
T KOG0309|consen 177 SH----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI 248 (1081)
T ss_pred cc----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence 33 334999999865 5667777766 77888887643 35678889999999999875433222111111 124
Q ss_pred ceEEEecCCC--EEEEEEC---------CCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 618 PRICFNKNGT--LLAVIAN---------ENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 618 ~~v~~s~~~~--~l~~~~~---------dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
..-.+.|-|. ++.-.-. ++....|+..++ +++..+.+|.+.|....|....... ++
T Consensus 249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d 316 (1081)
T KOG0309|consen 249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD 316 (1081)
T ss_pred eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence 4444555332 2111111 222233443333 6788888998888766654322211 11
Q ss_pred CCCCCCccceecccCccccccce
Q 001403 686 PKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
.....-.+++-+.|.++++|.+.
T Consensus 317 ~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 317 YDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred CCccceeEEEeecCCceEeeecc
Confidence 11223358999999999999865
No 305
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.66 E-value=3.3e-05 Score=81.22 Aligned_cols=184 Identities=14% Similarity=0.168 Sum_probs=121.5
Q ss_pred ccEEEec-CCCCEEEEEeCCeEEEEEcCCceeEEEEcC-----CCCCeEEEEEcCCCCcEEEEEeCC--------CeEEE
Q 001403 797 VPCFALS-KNDAYLFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILI 862 (1084)
Q Consensus 797 v~~l~~s-~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~la~g~~d--------g~i~i 862 (1084)
...+++. +++.+ +.+..+.+.++|..+++....... .....+.+++.| +|++.++.... |.|..
T Consensus 42 ~~G~~~~~~~g~l-~v~~~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~ 119 (246)
T PF08450_consen 42 PNGMAFDRPDGRL-YVADSGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYR 119 (246)
T ss_dssp EEEEEEECTTSEE-EEEETTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEE
T ss_pred CceEEEEccCCEE-EEEEcCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEE
Confidence 6677777 66555 445555566669988865443332 335678999999 88877776544 56777
Q ss_pred EEcCCceeeeeecccccCEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCc--eeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 863 YNARSSEVISKLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 863 wd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~-s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
++.. ++...... .-...+.++|+||++.|. +-+..+.|..+++.... ......+....... +..-.+++..+
T Consensus 120 ~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~ 194 (246)
T PF08450_consen 120 IDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSD 194 (246)
T ss_dssp EETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTT
T ss_pred ECCC-CeEEEEec-CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCC
Confidence 7777 55433333 455678999999998765 56677889999986432 22223332222221 13668999999
Q ss_pred CCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEe
Q 001403 940 QTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF 989 (1084)
Q Consensus 940 g~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~ 989 (1084)
|++.++. ..+.|.+++.. |+.+..+..+ ...+++++|. +|.+.|+..+
T Consensus 195 G~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 195 GNLWVADWGGGRIVVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp S-EEEEEETTTEEEEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEEcCCCEEEEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence 9987774 68899999988 8888776654 4589999994 6766666554
No 306
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=0.00018 Score=70.06 Aligned_cols=135 Identities=13% Similarity=-0.020 Sum_probs=89.1
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
.+++.|+..+.+.--|..+++...+..... ++.+-+.- -|++++.+.. ++.+++.+.++|.....+.... .
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~-RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGV-RIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCc-eeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence 466777777777777777766655433222 33333322 4667777776 5559999999998887776544 2
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeE
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI 638 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i 638 (1084)
--......+++..+.+|+.|++.+..|..+...+...+..+.. ..+-+..| ++.+ .++...|.+
T Consensus 95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sl-y~a~t~G~v 159 (354)
T KOG4649|consen 95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSL-YAAITAGAV 159 (354)
T ss_pred hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceE-EEEeccceE
Confidence 2223456788999999999999999999999999887766553 23344555 4433 333333443
No 307
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.62 E-value=8.8e-06 Score=79.05 Aligned_cols=241 Identities=12% Similarity=0.049 Sum_probs=148.6
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
.-+||.|+ .|...+|...+.+.... ...+...|+-+.---+...-+..++.|.++++.+++-+.....+.-..-.+.+
T Consensus 84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns 163 (344)
T KOG4532|consen 84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNS 163 (344)
T ss_pred ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceee
Confidence 34677765 69999999986654333 23333333211111112234566788888888888755433222211123889
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee-eecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce
Q 001403 884 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS-LQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC 961 (1084)
Q Consensus 884 l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~ 961 (1084)
+++++|++++++.+....|..|.++......... ..... ..-.+..||.....+|++ .||++.|||++....
T Consensus 164 ~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~------D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~t 237 (344)
T KOG4532|consen 164 LHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTS------DHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMAT 237 (344)
T ss_pred eEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccC------CCceeeeeccCcceEEEEecCCcEEEEEeccccc
Confidence 9999999999999999999999998754333221 11111 134678999999999984 899999999986543
Q ss_pred ee----EeecCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCC
Q 001403 962 LK----QWFPISSVPISQATFSCDCR--MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKP 1035 (1084)
Q Consensus 962 ~~----~~~~~h~~~v~~l~fs~dg~--~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~ 1035 (1084)
.. ...+.|.+.+..+.||+-|. +|+..-.-+.+.+-|++++.-...+....-....+...+++-. .|.- ++
T Consensus 238 pm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt--~f~~-~n 314 (344)
T KOG4532|consen 238 PMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGT--NFNN-EN 314 (344)
T ss_pred chhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccc--cccC-CC
Confidence 32 22445899999999998653 4555555678999999999776666533322221112224432 2332 23
Q ss_pred CEEEEEeCCCcEEEEcCCCCC
Q 001403 1036 TQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
..+-+.. .-++.-|++....
T Consensus 315 ~s~~v~~-e~~~ae~ni~srs 334 (344)
T KOG4532|consen 315 ESNDVKN-ELQGAEYNILSRS 334 (344)
T ss_pred ccccccc-chhhheeeccccc
Confidence 3333332 2355667765543
No 308
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=98.60 E-value=1.3e-05 Score=83.23 Aligned_cols=261 Identities=14% Similarity=0.167 Sum_probs=155.8
Q ss_pred ceEEEEcCCCceeeee--ccc-ccCccccccceEEEEEcCCccccceeeeecCCC----CCeEEEEEcCCCCEEEEEe--
Q 001403 337 PMSMDFHPVQHTLLLG--LWD-VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG----VSVNRVVWSPDGSLLGVAY-- 407 (1084)
Q Consensus 337 V~~v~~spdg~~las~--~~d-~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~----~~V~~v~fspdg~~las~~-- 407 (1084)
.-.+.+||||+.+.+. .|. ..-|+. .-.|.+||..+.....+..+..+|. ......++|.||+++.+..
T Consensus 38 ~~~~~~spdgk~~y~a~T~~sR~~rG~R--tDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T 115 (342)
T PF06433_consen 38 LGNVALSPDGKTIYVAETFYSRGTRGER--TDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT 115 (342)
T ss_dssp SEEEEE-TTSSEEEEEEEEEEETTEEEE--EEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES
T ss_pred CCceeECCCCCEEEEEEEEEeccccccc--eeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccC
Confidence 3457789999999872 111 111222 3679999999876665554443322 2334578999999998874
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEec----cCCCcEE-
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFE----GHGAPVY- 481 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~----~h~~~v~- 481 (1084)
-...|.|-|+..++.+.. +. -.+ |.-.-|.+.. -+.+-+.||++.-..+. .|+...+.. .-.+++.
T Consensus 116 Pa~SVtVVDl~~~kvv~e---i~-~PG---C~~iyP~~~~-~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~ 187 (342)
T PF06433_consen 116 PATSVTVVDLAAKKVVGE---ID-TPG---CWLIYPSGNR-GFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE 187 (342)
T ss_dssp SSEEEEEEETTTTEEEEE---EE-GTS---EEEEEEEETT-EEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S
T ss_pred CCCeEEEEECCCCceeee---ec-CCC---EEEEEecCCC-ceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc
Confidence 456799999999876552 22 112 2222233322 46777779998888877 565543221 1112221
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEe--ecCC------C----CeEEEEEEcCCCCEEEEEeeC------C
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAP------G----LGCTRMAYSANGRRLFSCGTS------K 543 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--~~~~------~----~~i~~~~~s~d~~~l~~~~~~------~ 543 (1084)
.-++ ...+..++-.+.+|.|+--|+........ +..- . +...-+++++..++|++.-.. +
T Consensus 188 ~~~~--~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 188 HPAY--SRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp --EE--ETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ccce--ECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 1112 12334566688899998888876654331 1110 1 123457888777666654322 2
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC-EEEEEE-CCCcEEEEECCCCeEEEEEcCCCC
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAG-DDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
++...|.++|+.+++.+.++.... ++.++..+.+.+ +|++.+ .++.+.+||..+|+.+..+..-+.
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~----~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEH----PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEE----EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred CCceEEEEEECCCCeEEEEEeCCC----ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 334569999999999999998644 577899988765 555544 579999999999999999875544
No 309
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.60 E-value=7.7e-06 Score=79.46 Aligned_cols=190 Identities=10% Similarity=-0.025 Sum_probs=128.3
Q ss_pred EEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-eee-e-eecccccCEEEEE
Q 001403 809 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVI-S-KLEGHSKRVTGLV 885 (1084)
Q Consensus 809 l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-~~~-~-~l~~h~~~V~~l~ 885 (1084)
+++..|.++++++++-+..........-...++++++ |++++++.++...|..|.++.. +.+ . .....++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3334467777777764433222221112378999999 9999999999999999999763 322 2 2233455567889
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE--EEEE-eCCeEEEEEcCCccee
Q 001403 886 FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTCL 962 (1084)
Q Consensus 886 ~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~--la~~-~d~~i~vwd~~~~~~~ 962 (1084)
|+.....+|++..||++.|||+....... ...........+.+..+.|++-|.+ |..+ .-+.+.+.|++++...
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm---~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~ 287 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPM---AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNH 287 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccch---hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCcee
Confidence 99999999999999999999998743222 1111222223468999999987643 3333 4567999999988765
Q ss_pred eEeecC------C-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 963 KQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 963 ~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
..+... | ...|..-+|+.++..+.+.+++ .+.-|++.+..
T Consensus 288 q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs 334 (344)
T KOG4532|consen 288 QVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS 334 (344)
T ss_pred eEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence 543322 3 2348888999988888877655 46667776653
No 310
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.58 E-value=9.2e-06 Score=85.21 Aligned_cols=194 Identities=13% Similarity=0.090 Sum_probs=121.9
Q ss_pred CCCEEEEE-eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee-cccc---c
Q 001403 805 NDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHS---K 879 (1084)
Q Consensus 805 dg~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l-~~h~---~ 879 (1084)
++..++++ .++.+..||..+|+.+..+............ .+..+++++.++.++.+|..+|+.+... .... .
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~ 111 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG 111 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---cccccccccceeeeEecccCCcceeeeeccccccccc
Confidence 45555555 5899999999999998887753321222222 2345666778889999999999998874 3221 1
Q ss_pred CEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCcc--CCCCceEEEEccCCCEEEEEeCCe-EEEEEc
Q 001403 880 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--LAPSETHIQFHKDQTRFLLVHETH-LAIYEA 956 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~dg~~la~~~d~~-i~vwd~ 956 (1084)
.........++..++.+..++.|..+|.++|+..-............ ....+..-....++..+++..++. +.+ |+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~-d~ 190 (238)
T PF13360_consen 112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDGRVVAV-DL 190 (238)
T ss_dssp TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTSSEEEE-ET
T ss_pred cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCCeEEEE-EC
Confidence 12233333348888888889999999999988654443322221110 000122333334554444456665 555 99
Q ss_pred CCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 957 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.+++.+.... ...+.. ....++..|+.++.++.|..||+.+|+.+.
T Consensus 191 ~tg~~~w~~~---~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 191 ATGEKLWSKP---ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TTTEEEEEEC---SS-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CCCCEEEEec---CCCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 9999664322 222222 245677888888899999999999998874
No 311
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.55 E-value=7.2e-08 Score=107.51 Aligned_cols=194 Identities=18% Similarity=0.226 Sum_probs=144.0
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCC--cE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA--QI 902 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--~I 902 (1084)
.+..+++..+....+|++|+. +.+.|++|+..|.|++|++.+|.......+|.++|+.+.-+-||.++.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888899999999 889999999999999999999999999999999999999999998887665433 46
Q ss_pred EEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCC---CCCEEEEEE
Q 001403 903 FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS---SVPISQATF 978 (1084)
Q Consensus 903 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~f 978 (1084)
.+|++.+-- .....+. ...++.||...+.-+.| ......+||+.++..+.+++.+. +..-....|
T Consensus 1170 aLW~~~s~~----~~~Hsf~-------ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTG----GPRHSFD-------EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhcccccc----Ccccccc-------ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 799998711 1122222 45688999886665665 44678999999999887765443 233367889
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEecccc-ccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
||+..+++ .||. +||++..+-+.+|.... +.. =.||| +|+.++.-+ .|||+.
T Consensus 1239 sP~D~LIl---ndGv--LWDvR~~~aIh~FD~ft~~~~------------G~FHP-~g~eVIINS-----EIwD~R 1291 (1516)
T KOG1832|consen 1239 SPCDTLIL---NDGV--LWDVRIPEAIHRFDQFTDYGG------------GGFHP-SGNEVIINS-----EIWDMR 1291 (1516)
T ss_pred CCCcceEe---eCce--eeeeccHHHHhhhhhheeccc------------ccccC-CCceEEeec-----hhhhhH
Confidence 99998877 5663 79999887777665322 222 24888 477776654 467764
No 312
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.54 E-value=3.5e-05 Score=85.54 Aligned_cols=275 Identities=13% Similarity=0.179 Sum_probs=152.6
Q ss_pred cCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc
Q 001403 343 HPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD 422 (1084)
Q Consensus 343 spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~ 422 (1084)
||||++++....-...-..-..+.+.|||+++....... .....+....|||||+++|.... +.|.+++..+++.
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~----~~~~~~~~~~~sP~g~~~~~v~~-~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLT----PPPPKLQDAKWSPDGKYIAFVRD-NNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-----EETTBSEEEE-SSSTEEEEEET-TEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECc----CCccccccceeecCCCeeEEEec-CceEEEECCCCCe
Confidence 799999988321111111112378999999985443221 12568899999999999999864 5699999877743
Q ss_pred ccceeeeec-------c---------cccEeEEEeecCCCcEEEEEEeCCCc----------------------------
Q 001403 423 ARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKT---------------------------- 458 (1084)
Q Consensus 423 ~~~~~~l~~-------h---------~~~V~~l~~s~d~~~l~l~s~~~d~~---------------------------- 458 (1084)
.+. +..| - -+.-..+.|||||+++.++... +..
T Consensus 76 ~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d-~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G 152 (353)
T PF00930_consen 76 TQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD-EREVPEYPLPDYSPPDSQYPEVESIRYPKAG 152 (353)
T ss_dssp EES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE--TTS-EEEEEEESSSTESS-EEEEEE--BTT
T ss_pred EEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC-CcCCceEEeeccCCccccCCcccccccCCCC
Confidence 321 1222 0 1123568899999953333222 222
Q ss_pred -------EEEEECCCCceee-Ee----ccCCCcEEEEeecccCCCcEEEE--EecCC---eEEEEECCCCCceEeecC-C
Q 001403 459 -------IKVWDAVTGSRTY-SF----EGHGAPVYSLCPHAKENIHFIFS--ISVDG---KIKAWLYDSLGARVDYDA-P 520 (1084)
Q Consensus 459 -------i~vwd~~~g~~~~-~~----~~h~~~v~~~~~~~~~~~~~l~s--~s~dg---~i~iwd~~~~~~~~~~~~-~ 520 (1084)
+.|+|+++++... .. ..-..-+..+.|.+ ++..++. ...+. .+.++|..++........ .
T Consensus 153 ~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~ 230 (353)
T PF00930_consen 153 DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETS 230 (353)
T ss_dssp S---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEES
T ss_pred CcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecC
Confidence 2334544444321 11 12233456666744 3342332 23332 256667766555433322 1
Q ss_pred CCeE---EEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce-EEEEEcCCCCEEEE-EEC----
Q 001403 521 GLGC---TRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-SVVHFDTAKDQILA-AGD---- 590 (1084)
Q Consensus 521 ~~~i---~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v-~~~~~s~~~~~l~~-~~~---- 590 (1084)
...+ ....+. +++..++..+. ++|-..|++++..++.......+ . -.| ..+.++++++.++. +..
T Consensus 231 ~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G-~---~~V~~i~~~d~~~~~iyf~a~~~~p~ 305 (353)
T PF00930_consen 231 DGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSG-D---WEVTSILGWDEDNNRIYFTANGDNPG 305 (353)
T ss_dssp SSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-S-S---S-EEEEEEEECTSSEEEEEESSGGTT
T ss_pred CcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccC-c---eeecccceEcCCCCEEEEEecCCCCC
Confidence 2222 245554 88888877776 67788899999988875533333 2 356 34778888877765 443
Q ss_pred CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
...|+.-++..+.....+...... ...+.|||+|++++....
T Consensus 306 ~r~lY~v~~~~~~~~~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 306 ERHLYRVSLDSGGEPKCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SBEEEEEETTETTEEEESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred ceEEEEEEeCCCCCeEeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 335666677733445555544332 148999999998876544
No 313
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.52 E-value=1.5e-05 Score=89.60 Aligned_cols=105 Identities=12% Similarity=0.108 Sum_probs=76.1
Q ss_pred EecCCCCEEEEEeCCeEEEEEcCC-----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEE-eCCCeEEEEEcCCcee----
Q 001403 801 ALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAIG-MDDSTILIYNARSSEV---- 870 (1084)
Q Consensus 801 ~~s~dg~~l~~~sdg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g-~~dg~i~iwd~~~~~~---- 870 (1084)
++.++|++... .++.|.+.|..+ .+.+..+. -......++++| ||++++++ ..+.+|.|+|+.+.+.
T Consensus 283 a~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~ 359 (635)
T PRK02888 283 EAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDG 359 (635)
T ss_pred HhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhc
Confidence 34567887665 467899999988 34444444 445678899999 77766655 4588999999987542
Q ss_pred --------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 871 --------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 871 --------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+.+.+- ...-...+|.++|....|-.-|..|..||+..
T Consensus 360 ~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 360 KIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred cCCccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 333332 22334578999999888999999999999986
No 314
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.52 E-value=8.8e-05 Score=82.33 Aligned_cols=305 Identities=12% Similarity=0.090 Sum_probs=159.6
Q ss_pred cCCCCEEEEEeeCC-----CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 530 SANGRRLFSCGTSK-----EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 530 s~d~~~l~~~~~~~-----~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
|||+++++...... +..+.+.++|+.+++....... . ..+....|+|+|+.++... ++.|++++..++..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~ 75 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE 75 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence 57888887744211 1245589999999877655544 2 5788899999999998886 57899999988855
Q ss_pred EEEEcCCCC---------------CCCcceEEEecCCCEEEEEECC-CeEEEEEcC---CCCeeeeccccccceeEEEEc
Q 001403 605 LTTIDAGGG---------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSVN 665 (1084)
Q Consensus 605 ~~~~~~~~~---------------~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~~---~~~~~~~~~~~~~~i~~~~~~ 665 (1084)
.+....... ...-..+.||||+++||....| ..++.+.+. .... .-..+..+.+.
T Consensus 76 ~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~YP 149 (353)
T PF00930_consen 76 TQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRYP 149 (353)
T ss_dssp EESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE--
T ss_pred EEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCcccccccC
Confidence 443321100 1223578899999999887553 344433322 1110 00011111211
Q ss_pred CCCceeeeeccCceeEecCCCCCCCCccceecccCc--cccccceeecCccceeeccC--CccccceEEEEEEecCCCeE
Q 001403 666 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK--SEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 666 p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~--i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~l~~s~~g~~l 741 (1084)
. .|..... +.++++..+... .+..+ .......+..+.|.++++.+
T Consensus 150 k----------------------------~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~l 198 (353)
T PF00930_consen 150 K----------------------------AGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKRL 198 (353)
T ss_dssp B----------------------------TTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEEE
T ss_pred C----------------------------CCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcEE
Confidence 0 1111111 223333222111 11111 12245678899999999855
Q ss_pred EEeecC---CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec-CCCCEEEEEe--CC
Q 001403 742 FALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--GG 815 (1084)
Q Consensus 742 ~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~dg~~l~~~s--dg 815 (1084)
++.-.+ ..+. +.+.|..++.+.........+--.......+. +++..++..+ +|
T Consensus 199 ~~~~~nR~q~~~~--------------------l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G 258 (353)
T PF00930_consen 199 WVQWLNRDQNRLD--------------------LVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDG 258 (353)
T ss_dssp EEEEEETTSTEEE--------------------EEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTS
T ss_pred EEEEcccCCCEEE--------------------EEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCC
Confidence 444333 2222 22334444443222222111122233456665 7777666655 44
Q ss_pred --eEEEEEcCCceeEEEEcCCCCCeEE-EEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 816 --VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 816 --~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~la~g~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
.|.+++..++. ...+....-.|.. +.++++++.+..++..++ .|+.-++.++..+..+....+.-..+.|||
T Consensus 259 ~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp 337 (353)
T PF00930_consen 259 YRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP 337 (353)
T ss_dssp SEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred CcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence 46777776665 3455545556744 778885555666676533 666667772333445543333336899999
Q ss_pred CCCEEEEEe
Q 001403 889 ALNILVSSG 897 (1084)
Q Consensus 889 d~~~l~s~s 897 (1084)
|+++++-..
T Consensus 338 dg~y~v~~~ 346 (353)
T PF00930_consen 338 DGKYYVDTY 346 (353)
T ss_dssp TSSEEEEEE
T ss_pred CCCEEEEEE
Confidence 999988543
No 315
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.51 E-value=0.00072 Score=65.93 Aligned_cols=102 Identities=7% Similarity=-0.018 Sum_probs=73.4
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
.+.+.-.|..+|+.+..-... ..+.+-+.- -|++++.|...|.+++.+..+|.....+...+... ......++
T Consensus 32 s~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d~~ 104 (354)
T KOG4649|consen 32 SGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCDFD 104 (354)
T ss_pred CceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEcCC
Confidence 455777788888776443221 233332222 46789999999999999999998887776544321 23456778
Q ss_pred CCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 626 GTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+..+.+++.|++.+..|..+..++...+.
T Consensus 105 ~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 105 GGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred CceEEEecCCCcEEEecccccceEEeccc
Confidence 99999999999999999998877776553
No 316
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.47 E-value=0.00017 Score=85.16 Aligned_cols=117 Identities=18% Similarity=0.240 Sum_probs=82.3
Q ss_pred CccEEEecCCCCEEEEEe-----C-CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-----d-g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~ 866 (1084)
.-+.+.|.-||+++|+.. + ..|++||.+ |..-.+-....+.-.+++|-| .|.++|+-. .|+.|.+|.-+
T Consensus 197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecC
Confidence 345688999999999843 4 679999987 544433333344557899999 888888754 35579998754
Q ss_pred C---ceeeeeecccccCEEEEEEcCCCCEEEE---EeCCCcEEEEeCCCCceee
Q 001403 867 S---SEVISKLEGHSKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 867 ~---~~~~~~l~~h~~~V~~l~~spd~~~l~s---~s~dg~I~iwd~~~~~~~~ 914 (1084)
. |+..-.+.....+|..++|+.++..||. ......|++|-+.+..-..
T Consensus 275 GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYL 328 (1265)
T KOG1920|consen 275 GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYL 328 (1265)
T ss_pred CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEEEE
Confidence 2 2333334444556999999999999997 4455559999998855333
No 317
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=0.00012 Score=82.61 Aligned_cols=184 Identities=12% Similarity=0.073 Sum_probs=119.4
Q ss_pred EEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----eEEEEEcCCceeeee
Q 001403 800 FALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISK 873 (1084)
Q Consensus 800 l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----~i~iwd~~~~~~~~~ 873 (1084)
+=++|||+.+...+ .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 34678998776555 4779999999888877765433 446789999 788887776322 233222222111111
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC----CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--e
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--H 947 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~ 947 (1084)
+.-. .+ -++.+||++... .++.|.+.|..+ +. .....+.... ....+.+||||++++++ .
T Consensus 276 fni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVankl 341 (635)
T PRK02888 276 FNIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKL 341 (635)
T ss_pred EchH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCC
Confidence 1100 00 133457887665 367899999887 22 1122233322 35679999999999994 5
Q ss_pred CCeEEEEEcCCcce------------eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 948 ETHLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 948 d~~i~vwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
+.++.|.|+.+.+. ..+... ...-...+|.++|....|-.-|..|..||+..
T Consensus 342 S~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 342 SPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CCcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 78999999987653 222222 23345678999999888888999999999987
No 318
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.47 E-value=4.4e-07 Score=63.50 Aligned_cols=39 Identities=31% Similarity=0.595 Sum_probs=37.2
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
|+++.++.+|.+.|++++|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467899999999999999999999999999999999997
No 319
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=1.9e-05 Score=81.43 Aligned_cols=251 Identities=12% Similarity=0.151 Sum_probs=148.5
Q ss_pred eecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
++.+|...|..++|||..+ ++..++.+..|+|.|+++..+.. .+..| ..+++++|.-|... +++.|...|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5777899999999999877 78888999999999999976555 45556 78999999999876 8999999999999
Q ss_pred EECCCCc-eeeEecc--CCCcEEEEeeccc----CCCcEEEEEecCCeEEEEECCCCCc--eEeecC-CCCeEEEEEEcC
Q 001403 462 WDAVTGS-RTYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDA-PGLGCTRMAYSA 531 (1084)
Q Consensus 462 wd~~~g~-~~~~~~~--h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~ 531 (1084)
||++..+ .+..+.+ ...+|..++..+. ..|.+++..+.+ +..|++..... ....+. ..+.+.++...+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 9998543 2333322 2344544432211 122344444433 34555433222 222222 244666777777
Q ss_pred CCCEEEEEeeCCCCCee---E-EEecCCCceEeeeee-cc---ccc-cCceEEEEEcCCCCEEEE-EECCCcEEEEECCC
Q 001403 532 NGRRLFSCGTSKEGESF---L-VEWNESEGAIKRTYQ-GL---QLQ-HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK 601 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~---i-~~wd~~~~~~~~~~~-~~---~~~-~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~ 601 (1084)
-.+.++........-.. + .--|-.+|..+..-+ ++ ... ...-..+.-.++.++++. ++..+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 66766665543211111 1 111222333321111 11 000 000112222345566555 55678899999999
Q ss_pred CeEEEEEcCCCCCCCcceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001403 602 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP 644 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~-~-~~~l~~~~~dg~i~iwd~~ 644 (1084)
++.++.+.... .|..++... + +.+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999998763 355655443 3 34566555 4578888654
No 320
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.46 E-value=1.7e-06 Score=83.55 Aligned_cols=195 Identities=15% Similarity=0.198 Sum_probs=121.3
Q ss_pred CCcEEEEEeCCCeEEEEEcCCcee-eeeecc-cccCEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCceeeeeeee
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEV-ISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~-~~~l~~-h~~~V~~l~~spd~~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
-+.-++++..||.+-+++.+.-.. ..+... |.+. .+.+....+..+.+++ .-+..++|++...+ .+.
T Consensus 100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~-----t~~ 173 (319)
T KOG4714|consen 100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK-----TLI 173 (319)
T ss_pred cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc-----ccc
Confidence 456789999999999998765111 111111 2221 1122223444444332 11235667766522 111
Q ss_pred cCCCCccCCCCceEEEEccCCCEEEE-E-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc-CCCEEEEEeCCCcEEE
Q 001403 920 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 920 ~~~~~~~~~~~v~~~~~s~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~i~v 996 (1084)
. .+. ....|++++-.|..+.+++ | .||.+.+||.+.......++..|..+|..+-|.| ++..|+++++||.+--
T Consensus 174 ~--~~~-~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~ 250 (319)
T KOG4714|consen 174 P--SKK-ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH 250 (319)
T ss_pred c--ccc-ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence 1 111 1124889999998777666 4 7889999999999888888889999999999999 7889999999999999
Q ss_pred EEcCCCceeEEec---cccccCCCCcccceee--------eEE-EECCCCCCEEEEEeCCCcEEEEc
Q 001403 997 HEASNLEVQCRIL---STAYLRPTTSCLHVYP--------HAI-AAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 997 wd~~~~~~~~~~~---~~~~~~~~~~~~~v~~--------~~~-~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
||..+--+-+... ...|+...+-.+.+.. +++ +|+- .|..|++|++-+.|++.+
T Consensus 251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV-~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDV-LGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeec-cCceEEeccccceEEEec
Confidence 9998632222111 2234444332221110 111 2333 378999999999999875
No 321
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=98.45 E-value=0.0082 Score=69.98 Aligned_cols=487 Identities=10% Similarity=0.024 Sum_probs=248.2
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCC--CC
Q 001403 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN--GR 534 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d--~~ 534 (1084)
.|++.+-. .....+....+.....+.. +...++.++.++.+...++....... ....-...+.|+.++|- ++
T Consensus 471 ~iRl~ss~--~~~~~W~~p~~~ti~~~~~---n~sqVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~ 545 (1096)
T KOG1897|consen 471 SIRLVSSA--GLRSEWRPPGKITIGVVSA---NASQVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAP 545 (1096)
T ss_pred cEEEEcch--hhhhcccCCCceEEEEEee---cceEEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCC
Confidence 46666633 2333444333332233321 22356666666776666665544211 11223447888888874 33
Q ss_pred ----EEEEEeeCCCCCeeEEEecCCCceEeeee--eccccccCceEEEEEcCCCCEEEEEECCCcEEEE--ECCCCeEEE
Q 001403 535 ----RLFSCGTSKEGESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW--DMNKVQLLT 606 (1084)
Q Consensus 535 ----~l~~~~~~~~~~~~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw--d~~~~~~~~ 606 (1084)
.++.|..+ +-.+.+.-..+...+... .+... ...|....|-.|..+|+++..||.+.-| |..+|..-.
T Consensus 546 ~~s~~~aVG~Ws---~~~~~l~~~pd~~~~~~~~l~~~~i-PRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd 621 (1096)
T KOG1897|consen 546 NKSRLLAVGLWS---DISMILTFLPDLILITHEQLSGEII-PRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD 621 (1096)
T ss_pred CcceEEEEEeec---ceEEEEEECCCcceeeeeccCCCcc-chheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc
Confidence 44544432 111222222222222221 11111 1345555676778899999999998766 555555443
Q ss_pred EEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 607 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
.-..+-++.++.--.|+..++.-+.+..|.-..+|.....-.+..+....-. .-+.++ .+.
T Consensus 622 ~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~-~~c~f~------------------s~a 682 (1096)
T KOG1897|consen 622 RKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVN-HMCPFN------------------SDA 682 (1096)
T ss_pred ccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhh-hhcccc------------------ccc
Confidence 3333333344555567665555455555566666654433222111110000 000111 000
Q ss_pred CCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc
Q 001403 687 KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 766 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~ 766 (1084)
.+|+ ++.+ ..+.+++..++.-.....+.+. -......+++.+....+.+.+....... + ..+..
T Consensus 683 ~~d~--l~~~-~~~~l~i~tid~iqkl~irtvp-----l~~~prrI~~q~~sl~~~v~s~r~e~~~------~--~~~ee 746 (1096)
T KOG1897|consen 683 YPDS--LASA-NGGALTIGTIDEIQKLHIRTVP-----LGESPRRICYQESSLTFGVLSNRIESSA------E--YYGEE 746 (1096)
T ss_pred CCce--EEEe-cCCceEEEEecchhhcceeeec-----CCCChhheEecccceEEEEEecccccch------h--hcCCc
Confidence 1111 2222 1233444433322222222221 1234455666664444444433221110 0 01112
Q ss_pred ceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC-CCEEEEEe-----------CCeEEEEEcCCceeEEEEcCC
Q 001403 767 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-g~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.....++++|.++-+.+...++...+....+.+..|..| +.++++|. .|.|.+|....++.++....+
T Consensus 747 ~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~ 826 (1096)
T KOG1897|consen 747 YEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAET 826 (1096)
T ss_pred ceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeee
Confidence 222346778877766555555543223334444457777 77777763 277999988774444444332
Q ss_pred --CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 835 --SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 835 --~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
.+.+.++..- +|++||. -+..|++|+..+.+.++.-..|..++..+...-.|..++.|.-=+.+.+.-....+.
T Consensus 827 ~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg 902 (1096)
T KOG1897|consen 827 VVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEG 902 (1096)
T ss_pred eeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCC
Confidence 2444444432 5777764 356899999999877777777899999999999999999998888777765554331
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc------e----eeEeec-------CCCCCEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT------C----LKQWFP-------ISSVPISQ 975 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~------~----~~~~~~-------~h~~~v~~ 975 (1084)
.-....+.. +. .+++++.+-.+..++.+-.+|.+.+....+.. . ...+.. .|..-|..
T Consensus 903 ~f~evArD~--~p---~Wmtaveil~~d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelvn~f~hg~lv~~ 977 (1096)
T KOG1897|consen 903 NFEEVARDY--NP---NWMTAVEILDDDTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELVNKFRHGSLVMQ 977 (1096)
T ss_pred ceEEeehhh--Cc---cceeeEEEecCceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccceeeeeecceEee
Confidence 111122222 12 37888999888888888777776665543210 0 111111 12333333
Q ss_pred E--EEccCCCEEEEEeCCCcEEEE
Q 001403 976 A--TFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 976 l--~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+ ..+|-+..+..|..+|.|-+-
T Consensus 978 ~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 978 LGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred ccccccCCCCcEEEEEccceEEEE
Confidence 1 223444457778889988764
No 322
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.44 E-value=0.00021 Score=84.36 Aligned_cols=244 Identities=13% Similarity=0.069 Sum_probs=141.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...|.++.|--++.-++.+...|.|.+-|.++...- ....-...|.+++||||++ +++-...++++.+-+ .+-
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT-~~f 140 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMT-KDF 140 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEe-ccc
Confidence 368999999999999999999999999998876421 2334566899999999999 555555566665533 222
Q ss_pred ceeeEeccC-----CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 SRTYSFEGH-----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~~~~~~~~h-----~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++..-.-+ .+....+.|-... .=+-|+ .|.....+................-+.++|-.||+++++....
T Consensus 141 ~~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~ 216 (1265)
T KOG1920|consen 141 EPIAEKPLDADDERKSKFVNVGWGRKE---TQFRGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVE 216 (1265)
T ss_pred cchhccccccccccccccceecccccc---eeeecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEe
Confidence 222111101 1111122221100 000000 1111111000000000000111233568999999999885543
Q ss_pred CC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE---CCCcEEEEECCC---CeEEEEEcCCCCCC
Q 001403 543 KE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---DDHVIKIWDMNK---VQLLTTIDAGGGLP 615 (1084)
Q Consensus 543 ~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~ 615 (1084)
.. +...|++||.+ |..-..-.... +.-.+++|-|.|..+++-. .|+.|.++..+. |+..-.+... ..
T Consensus 217 ~~~~~RkirV~drE-g~Lns~se~~~---~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d--e~ 290 (1265)
T KOG1920|consen 217 SETGTRKIRVYDRE-GALNSTSEPVE---GLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD--EK 290 (1265)
T ss_pred ccCCceeEEEeccc-chhhcccCccc---ccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCccc--cc
Confidence 32 23789999977 44432222222 4456789999999998843 566798987643 2222222222 22
Q ss_pred CcceEEEecCCCEEEE---EECCCeEEEEEcCCCCe
Q 001403 616 ENPRICFNKNGTLLAV---IANENRIKILETPESNS 648 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~---~~~dg~i~iwd~~~~~~ 648 (1084)
.+..++|+.++..||+ ......|++|-+.+..-
T Consensus 291 ~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 291 EVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred chheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 3889999999999998 44455699999887643
No 323
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=5.2e-06 Score=86.44 Aligned_cols=256 Identities=14% Similarity=0.080 Sum_probs=175.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~ 465 (1084)
|.+.|+.+.-+ -.+++.+++.||.++.|.-..-..+.-...+..|.+.|.+++.+-++. ++.|.+. |..++++|++
T Consensus 8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence 77777777554 467999999999999998765333333335678999999999999998 7888777 9999999988
Q ss_pred CCceeeEe--ccCCCcEEEEeecccC-CC--cEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 466 TGSRTYSF--EGHGAPVYSLCPHAKE-NI--HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 466 ~g~~~~~~--~~h~~~v~~~~~~~~~-~~--~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
+-..+.-+ ..-.+.+. |..++ +. ..-++...+|.+.++|-....+ ...-..|..+|..+.+++-+..+++
T Consensus 85 n~DminmiKL~~lPg~a~---wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vS 161 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPGFAE---WVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVS 161 (558)
T ss_pred ccchhhhcccccCCCceE---EecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceee
Confidence 65443222 11122222 21121 11 2334445678899998765443 3344567789999999999999888
Q ss_pred EeeCCCCCeeEEEecCCC------ceEeeeeec------cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE
Q 001403 539 CGTSKEGESFLVEWNESE------GAIKRTYQG------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~------~~~~~~~~~------~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 606 (1084)
... .|.|.-|.... .+....++. .........++.|+|++..+.+-+.|..|++++..+|+.++
T Consensus 162 iD~----~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvq 237 (558)
T KOG0882|consen 162 IDI----SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQ 237 (558)
T ss_pred ccc----cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhh
Confidence 743 67799998762 111111111 11123567899999999999999999999999999988776
Q ss_pred EEcCCC-------------------------------CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 607 TIDAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 607 ~~~~~~-------------------------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+.... +...-..++|...|++|+.++-= -|++.++.++...+.+.
T Consensus 238 eiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~-gikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 238 EIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTIL-GIKVINLDTNTVVRILG 314 (558)
T ss_pred hhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeecce-eEEEEEeecCeEEEEec
Confidence 543210 01112457788888888888764 48899999887776653
No 324
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=98.40 E-value=1e-06 Score=83.56 Aligned_cols=133 Identities=22% Similarity=0.284 Sum_probs=97.0
Q ss_pred HHHHHHHhcCcCHHHHHHHhcccc-cccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001403 38 MKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA 116 (1084)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~ 116 (1084)
...++++|++|+++.|++.++... .+... ...+.|.|+.|+|+|++..++..+|+.+.|+.+.|......+.++.+.
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~ 82 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM 82 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 678999999999999999998752 12111 233889999999999999999999999999999766543557788888
Q ss_pred HHhccccccc--hhccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCc-chHHHHHHHHhHHHH
Q 001403 117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ 183 (1084)
Q Consensus 117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~Q 183 (1084)
.+|...+..+ ...+.... ....|.++.+.+.+.+-...- +| .+.|..++++....+
T Consensus 83 ~lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 83 SLLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 9988876554 22222222 236788888888876654322 33 566888888765443
No 325
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.38 E-value=8.8e-06 Score=84.80 Aligned_cols=212 Identities=12% Similarity=0.145 Sum_probs=143.1
Q ss_pred cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--C-ceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEE
Q 001403 431 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAW 506 (1084)
Q Consensus 431 ~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~--g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iw 506 (1084)
-|.+.|+.+.-+. .+ ++.+++.||.++.|--.. | +.+..+..|-+.|.+++. +-++.++.|.+. |..++++
T Consensus 7 mhrd~i~hv~~tk-a~--fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~--S~dg~L~~Sv~d~Dhs~Kvf 81 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AK--FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAV--SYDGWLFRSVEDPDHSVKVF 81 (558)
T ss_pred cccceeeeEeeeh-hh--eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhc--cccceeEeeccCcccceeEE
Confidence 4777788776654 34 799999999999998432 2 234556778888888887 447778888777 9999999
Q ss_pred ECCCCCceEee--cCCCCeEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEEEEcCC
Q 001403 507 LYDSLGARVDY--DAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 507 d~~~~~~~~~~--~~~~~~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
|+.+......+ ....+.+. .+...| .-+++.+.- .++.+.++|-.... ....+.+. |..+|..+.+.+.
T Consensus 82 DvEn~DminmiKL~~lPg~a~--wv~skGd~~s~IAVs~~--~sg~i~VvD~~~d~~q~~~fkkl--H~sPV~~i~y~qa 155 (558)
T KOG0882|consen 82 DVENFDMINMIKLVDLPGFAE--WVTSKGDKISLIAVSLF--KSGKIFVVDGFGDFCQDGYFKKL--HFSPVKKIRYNQA 155 (558)
T ss_pred EeeccchhhhcccccCCCceE--EecCCCCeeeeEEeecc--cCCCcEEECCcCCcCccceeccc--ccCceEEEEeecc
Confidence 99875543222 22222222 222233 223333322 25668999976543 33333332 2489999999999
Q ss_pred CCEEEEEECCCcEEEEECCC------CeEEEEEcC-------CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 582 KDQILAAGDDHVIKIWDMNK------VQLLTTIDA-------GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~------~~~~~~~~~-------~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+..+++....|.|.-|.... .+....+.. ........++.|+|+|..+.+...|..|++++..+++.
T Consensus 156 ~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGkl 235 (558)
T KOG0882|consen 156 GDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKL 235 (558)
T ss_pred ccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchh
Confidence 99999999999999998873 111111111 11223457899999999999999999999999999977
Q ss_pred eeecc
Q 001403 649 VDAAG 653 (1084)
Q Consensus 649 ~~~~~ 653 (1084)
++.+.
T Consensus 236 vqeiD 240 (558)
T KOG0882|consen 236 VQEID 240 (558)
T ss_pred hhhhh
Confidence 76554
No 326
>KOG0396 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=1.1e-06 Score=89.42 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=99.0
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhcccc-cccCccccchhhhH
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE 75 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~ 75 (1084)
++=+-|+|..||..+||-++|..|-++|.+. .++..++++|++|+...|+.-.+.-+ .+. +....+-|.
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~Lk--K~~S~lEf~ 192 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELK--KEESSLEFQ 192 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccchhhhH
Confidence 3457899999999999999999999999874 24788999999999999988876531 111 122237799
Q ss_pred HHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccc
Q 001403 76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1084)
Q Consensus 76 l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1084)
+..|.|+||+..+++.+|+.+.++.+.|.......+++....+|.++..
T Consensus 193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~ 241 (389)
T KOG0396|consen 193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY 241 (389)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence 9999999999999999999999999999987778889999999998654
No 327
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.38 E-value=0.00025 Score=75.46 Aligned_cols=174 Identities=14% Similarity=0.097 Sum_probs=90.5
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCC-ceeeeeecccc--cCEEEEEEc
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARS-SEVISKLEGHS--KRVTGLVFS 887 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~i~iwd~~~-~~~~~~l~~h~--~~V~~l~~s 887 (1084)
..|.-.|+.+|+....+. ....+..+.|||.|..+|+.+-+. . .-|||-+.+ |.....+..|. ..+..=-|+
T Consensus 168 ~~i~~idl~tG~~~~v~~-~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFE-DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEE-ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEe-cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 446666778777655554 456788999999878888876542 2 236676554 33334443332 234445789
Q ss_pred CCCCEEEEEeC-----CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCC------------
Q 001403 888 DALNILVSSGG-----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET------------ 949 (1084)
Q Consensus 888 pd~~~l~s~s~-----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~------------ 949 (1084)
|||..|..-+. +..|.-+|+.+++... +.... ....+..++||+++|- |.|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~--~~~~p--------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~ 316 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRR--LMEMP--------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKI 316 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEE--EEEE---------SEEEEEE-TTSSEEEEEE---------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceE--EEeCC--------ceeeeEEcCCCCEEEecCCCCCcccccccccee
Confidence 99988875432 4567778888866432 22221 3457788999999987 5432
Q ss_pred ----eEEEEEcCCcceeeEe--------ecCCC-CCEEEEEEccCCCEEEEEe-CCCcEEEEEc
Q 001403 950 ----HLAIYEAEELTCLKQW--------FPISS-VPISQATFSCDCRMVFTSF-VDGTLSIHEA 999 (1084)
Q Consensus 950 ----~i~vwd~~~~~~~~~~--------~~~h~-~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~ 999 (1084)
-|+++++..+...... ..+|. ..=..+.|||||++++-.| ..|...||=+
T Consensus 317 ~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 317 ENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp ----EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred cCCcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 4677888766643211 11111 1124679999999876544 5566665533
No 328
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.36 E-value=8.4e-06 Score=92.35 Aligned_cols=180 Identities=16% Similarity=0.182 Sum_probs=130.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 883 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~ 883 (1084)
++..++.|+ ...+..+|+.+.+..+...-..+.++-+.. +++++.+|...|+|.+-|..+.+.++++.+|++.|..
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 344555555 677889999998888877655555655555 6789999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC--CCEEEEEeCCeEE
Q 001403 884 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD--QTRFLLVHETHLA 952 (1084)
Q Consensus 884 l~~spd~~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~d~~i~ 952 (1084)
+.. .|++|+++|. |.-|+|||+..-+... .++.+.+ ..-+.|.|. .+..+++..|...
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q 291 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ 291 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence 666 5899999985 4568999998733211 2222222 345667775 3334446888888
Q ss_pred EEEcC---CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 953 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 953 vwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
+-|.. +...-..........+..+++|++|..|+.+..+|.|.+|-
T Consensus 292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 88843 22111111222245599999999999999999999999997
No 329
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.34 E-value=3.7e-06 Score=81.26 Aligned_cols=198 Identities=12% Similarity=0.136 Sum_probs=120.9
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee------------eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEE
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI------------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 905 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~------------~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iw 905 (1084)
++.+.++. ...|+++..++.+..+...++.+. +.+..|+++-.+-+.+--+..++++..||.+.+.
T Consensus 39 ~~~~~~v~--~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~ 116 (319)
T KOG4714|consen 39 LSKVSLSA--EYILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVF 116 (319)
T ss_pred EEEeechh--hheeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEE
Confidence 56666664 456777777776666555444332 3333344433333334446789999999999999
Q ss_pred eCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc
Q 001403 906 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFS 979 (1084)
Q Consensus 906 d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs 979 (1084)
+.+.-.... -+....+. .-.+.+.-..+.++.++ .-+..+.|++...+.+..-.. ....|++++-.
T Consensus 117 s~~~~~~~~---~~i~~~~~----~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~h 188 (319)
T KOG4714|consen 117 STDKDLALM---SRIPSIHS----GSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSH 188 (319)
T ss_pred echHHHhhh---hhcccccc----cccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCC
Confidence 988621111 01111111 12233344455555553 335567777653332221111 13458899988
Q ss_pred cCC-CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 980 CDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 980 ~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|.. ..+++|+.||.+.+||.+......+.. .. |...++ .+-|||.++..|.+++.||.+.-||-+.
T Consensus 189 p~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l-----~a--hk~~i~--eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 189 PAQQHLVCCGTDDGIVGLWDARNVAMPVSLL-----KA--HKAEIW--EVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cccccEEEEecCCCeEEEEEcccccchHHHH-----HH--hhhhhh--heeccCCCchheeEecCCCcEEEEcCCC
Confidence 854 556788889999999999985554333 11 344455 5789999999999999999999998753
No 330
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=4.3e-05 Score=86.55 Aligned_cols=206 Identities=15% Similarity=0.183 Sum_probs=134.7
Q ss_pred EEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEEEEeCCCc-----EEEEeCCCCceee-
Q 001403 842 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVSSGGDAQ-----IFVWDVDGWGIQT- 914 (1084)
Q Consensus 842 ~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~s~s~dg~-----I~iwd~~~~~~~~- 914 (1084)
+|++ ++..+|.|+.+|.|.+.+-. -+.+..++++... |+.+-...+..+|++.+.|++ |+||+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4666 67799999999999988743 4555777777776 555555555579999888765 8999998753222
Q ss_pred eeee---ecCC-CCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcC--Ccceee-EeecCCCCCEEEEEEccCCCEEE
Q 001403 915 CRSL---QTPD-GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAE--ELTCLK-QWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 915 ~~~~---~~~~-~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~--~~~~~~-~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
..++ +... .......++.+++.|.+-+.+|+| .+|.|..+.-. ..+-.+ .....-..+|++++|-.|++.++
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l 187 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL 187 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence 2222 1111 111123478999999999999998 77888888532 111111 11112278999999999998833
Q ss_pred EEeCCCcEEEEEcCCCceeEE-eccccccCCCCcccceeeeEEEECCCCCCE-EEEEeCCCcEEEEcCCCCCCCcccC
Q 001403 987 TSFVDGTLSIHEASNLEVQCR-ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQ-FAVGLTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 987 t~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~-l~~~~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
.+.+-..|.+|.+........ .. ..++...|.++++ ++. +++++ +..|.+|+..+.++.|+..
T Consensus 188 Fv~Tt~~V~~y~l~gr~p~~~~ld----------~~G~~lnCss~~~--~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 188 FVATTEQVMLYSLSGRTPSLKVLD----------NNGISLNCSSFSD--GTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred EEEecceeEEEEecCCCcceeeec----------cCCccceeeecCC--CCccEEEec-CceEEEEcCCCcceeeeec
Confidence 334456799999994441211 22 1224445778885 444 55553 4679999999988888763
No 331
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.28 E-value=2.1e-06 Score=86.36 Aligned_cols=153 Identities=15% Similarity=0.143 Sum_probs=112.7
Q ss_pred EEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeeecccccCEE
Q 001403 808 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-----EVISKLEGHSKRVT 882 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~-----~~~~~l~~h~~~V~ 882 (1084)
.+++|.+-.+-+-++++|-. +.|. ..+.|.++.|.. .+.++..|..+|.|..+|+..+ .+...+. |.+.|+
T Consensus 227 hfs~G~sqqv~L~nvetg~~-qsf~-sksDVfAlQf~~-s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvt 302 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGHQ-QSFQ-SKSDVFALQFAG-SDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVT 302 (425)
T ss_pred eecccccceeEEEEeecccc-cccc-cchhHHHHHhcc-cCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchh
Confidence 34555577788889887644 2333 567899999998 7889999999999999999874 3444444 889999
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 883 GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 883 ~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
++..-. ++++|.+.+.+|+|++||+.--++.. -+...+||......+. +...+....+++ |.|-..+||.++.|.
T Consensus 303 slq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~--~V~qYeGHvN~~a~l~-~~v~~eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 303 SLQILQFSQQKLMASDMTGKIKLYDLRATKCKK--SVMQYEGHVNLSAYLP-AHVKEEEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred hhhhhccccceEeeccCcCceeEeeehhhhccc--ceeeeecccccccccc-cccccccceEEEccCeeEEEEEecccCc
Confidence 987776 78889999999999999998744322 3677778765332222 234455555555 677889999999999
Q ss_pred eeeEeec
Q 001403 961 CLKQWFP 967 (1084)
Q Consensus 961 ~~~~~~~ 967 (1084)
.+.+...
T Consensus 380 Ll~tipf 386 (425)
T KOG2695|consen 380 LLCTIPF 386 (425)
T ss_pred eeeccCC
Confidence 8887543
No 332
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.27 E-value=3e-06 Score=85.22 Aligned_cols=149 Identities=15% Similarity=0.115 Sum_probs=113.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc--ccceeeeecccccEeEEEee
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFS 442 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s 442 (1084)
..|-+-+++++-.... . .++.|.++.|...+.++..|+.+|.|...|+..+.. .-.. .--.|...|+++..-
T Consensus 234 qqv~L~nvetg~~qsf----~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~L 307 (425)
T KOG2695|consen 234 QQVLLTNVETGHQQSF----Q-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQIL 307 (425)
T ss_pred ceeEEEEeeccccccc----c-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce-EEEEcCcchhhhhhh
Confidence 5566667766544322 1 567899999999999999999999999999986521 0111 122588999999887
Q ss_pred c-CCCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 443 A-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 443 ~-d~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
. +++ +|.+.+.+|+|++||.+.-++ +.+++||-..-..+-++-.+....+++++.|-..|+|.++.+....++.
T Consensus 308 q~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 308 QFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred ccccc--eEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 7 555 788888999999999986666 8899999776666655556666789999999999999999887776665
Q ss_pred CCC
Q 001403 519 APG 521 (1084)
Q Consensus 519 ~~~ 521 (1084)
.+.
T Consensus 386 f~~ 388 (425)
T KOG2695|consen 386 FPY 388 (425)
T ss_pred CCC
Confidence 443
No 333
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.20 E-value=0.00036 Score=77.86 Aligned_cols=195 Identities=14% Similarity=0.093 Sum_probs=120.9
Q ss_pred eecccccEeEEEeecCCCcEEEEEEeCC--CcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEEE
Q 001403 429 IDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKA 505 (1084)
Q Consensus 429 l~~h~~~V~~l~~s~d~~~l~l~s~~~d--~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~i 505 (1084)
+..-...+..-+|+|+++.+..++-... ..+.++|+.+++....+. ..+.-..-.|+| ||+.| ++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence 3344456777899999996444433333 359999999887654443 222222335644 55554 55667777555
Q ss_pred E--ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCC
Q 001403 506 W--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 583 (1084)
Q Consensus 506 w--d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 583 (1084)
| |+....... +....+.-..-.|+|||+.++..+ ++.|...|++++.+.+...+...... .-..-.|+|||+
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~----~~~~p~~SpdG~ 338 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGG----GNSNPVWSPDGD 338 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCC----CCcCccCCCCCC
Confidence 4 555554322 343333444778999999999986 55667789999998776643333222 122668999999
Q ss_pred EEEEEEC-CCc--EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 584 QILAAGD-DHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 584 ~l~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+++..+. +|. |.+.|..++...+.+.... ....-.|.++++.+...+..
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 9988664 344 6677777666555444322 23456777888777665543
No 334
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.18 E-value=0.00036 Score=77.83 Aligned_cols=139 Identities=9% Similarity=-0.005 Sum_probs=101.4
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
...|.--+++..++|++.|+.- |.+++|+-.++.....+ ..+-...+..+..|++..++|.|+..|.|.
T Consensus 33 ~~~v~lTc~dst~~~l~~GsS~---------G~lyl~~R~~~~~~~~~--~~~~~~~~~~~~vs~~e~lvAagt~~g~V~ 101 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGSSA---------GSVYLYNRHTGEMRKLK--NEGATGITCVRSVSSVEYLVAAGTASGRVS 101 (726)
T ss_pred cceEEEEEeecCCceEEEeccc---------ceEEEEecCchhhhccc--ccCccceEEEEEecchhHhhhhhcCCceEE
Confidence 3467777888899999998765 99999998877665543 334445667778899999999999999999
Q ss_pred EEEccCCccccceee---eecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCCCcEEEEee
Q 001403 414 LYAYHGGSDARQQLE---IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~---l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~~~v~~~~~ 485 (1084)
|+-++.+........ -..|...|++++|++|+. .+++|...|+|..-.+.+. ...+.+....+.|..+..
T Consensus 102 v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~ 178 (726)
T KOG3621|consen 102 VFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDY 178 (726)
T ss_pred eehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCcceEEeec
Confidence 998887543222111 113678999999999999 7999999999998887762 112334445566666654
No 335
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.16 E-value=7.1e-06 Score=57.27 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=36.8
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
|+++.++.+|...|++++|+| ++.+|++|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
No 336
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=0.00016 Score=74.72 Aligned_cols=236 Identities=14% Similarity=0.089 Sum_probs=135.0
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
|++.+..+-+... -+.+|...|..++|||.... ++..++.+.+|+|.|+++..++..+..+ ..+++++|.-++ .
T Consensus 175 v~~l~~~~fkssq---~lp~~g~~IrdlafSp~~~G-Ll~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde-~ 248 (463)
T KOG1645|consen 175 VQKLESHDFKSSQ---ILPGEGSFIRDLAFSPFNEG-LLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDE-R 248 (463)
T ss_pred eEEeccCCcchhh---cccccchhhhhhccCccccc-eeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCC-c
Confidence 5555544433322 46678889999999999876 5778899999999999999999888877 789999997654 6
Q ss_pred cEEEEEecCCeEEEEECCCCCceE-eecC--CCCeEEEEEE------cCCCCEEEEEeeCCCCCeeEEEecCCCc--eEe
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARV-DYDA--PGLGCTRMAY------SANGRRLFSCGTSKEGESFLVEWNESEG--AIK 560 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~-~~~~--~~~~i~~~~~------s~d~~~l~~~~~~~~~~~~i~~wd~~~~--~~~ 560 (1084)
++++.|...|.|.+||++..+... .+.. ...+|..++. .+.|.+++.... .+..|+..-. ...
T Consensus 249 h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt------~l~f~ei~~s~~~~p 322 (463)
T KOG1645|consen 249 HVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT------VLQFYEIVFSAECLP 322 (463)
T ss_pred ceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh------hhhhhhhhccccCCC
Confidence 899999999999999998765433 2221 2234444333 233444444432 1455554321 111
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECC-------CcEEE-EECCCCeEEEEEcCCC-CC-----CCcceEEEecCC
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-------HVIKI-WDMNKVQLLTTIDAGG-GL-----PENPRICFNKNG 626 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-------g~i~i-wd~~~~~~~~~~~~~~-~~-----~~v~~v~~s~~~ 626 (1084)
..++... .+...++...+..++++..... ..+-. -|-.+|..+....... +. ..-..+.-.++.
T Consensus 323 ~vlele~--pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n 400 (463)
T KOG1645|consen 323 CVLELEP--PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN 400 (463)
T ss_pred cccccCC--CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence 1111111 1344555555554555544322 00111 1222333332221100 00 001122223444
Q ss_pred CEEEE-EECCCeEEEEEcCCCCeeeeccccccceeEE
Q 001403 627 TLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 627 ~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
++++. +.+.+.+.+||..+...++.+... .++..+
T Consensus 401 n~iv~~gd~tn~lil~D~~s~evvQ~l~~~-epv~Di 436 (463)
T KOG1645|consen 401 NYIVVVGDSTNELILQDPHSFEVVQTLALS-EPVLDI 436 (463)
T ss_pred cEEEEecCCcceeEEeccchhheeeecccC-cceeec
Confidence 55544 445688999999998888776543 444433
No 337
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.13 E-value=0.002 Score=74.71 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=67.3
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCC------eEE--EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GCT--RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~------~i~--~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
..++.++.++.+.-.|..+++.+........ .+. .+++. ++..++.++. ++.|+-+|.++|+.+-.+
T Consensus 62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF 136 (488)
T ss_pred CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence 3567777788888888888777665543322 000 11111 2245555543 667999999999998777
Q ss_pred eccccc--cCceE-EEEEcCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEcC
Q 001403 564 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 564 ~~~~~~--~~~v~-~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
...... ...+. ...+. +..++.++ .+|.++.+|..+|+.+.....
T Consensus 137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~ 193 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT 193 (488)
T ss_pred cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec
Confidence 643300 00011 11222 24555554 368899999999999887765
No 338
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.10 E-value=0.0018 Score=75.19 Aligned_cols=254 Identities=11% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC-----e-EEEEEcCCCCcEEEEEe---------CCCeEEEEEcCCcee
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPT-----A-TSLAFNPHDNNVIAIGM---------DDSTILIYNARSSEV 870 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~-----i-~~l~~s~~d~~~la~g~---------~dg~i~iwd~~~~~~ 870 (1084)
++.++...++.|..+|.++|+.+..+...... + .+..+. ++ +++.++ .+|.+..+|..+|+.
T Consensus 111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~ 187 (488)
T cd00216 111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KK-LVIIGSSGAEFFACGVRGALRAYDVETGKL 187 (488)
T ss_pred CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CC-EEEEeccccccccCCCCcEEEEEECCCCce
Confidence 44444444899999999999999887644321 1 122232 23 455554 367899999999998
Q ss_pred eeeeccccc--------------------CE-EEEEEcCCCCEEEEEeCCC------------------cEEEEeCCCCc
Q 001403 871 ISKLEGHSK--------------------RV-TGLVFSDALNILVSSGGDA------------------QIFVWDVDGWG 911 (1084)
Q Consensus 871 ~~~l~~h~~--------------------~V-~~l~~spd~~~l~s~s~dg------------------~I~iwd~~~~~ 911 (1084)
+..+..... .| ...++.+.+.+++.++.++ .|.-.|.++|+
T Consensus 188 ~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~ 267 (488)
T cd00216 188 LWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK 267 (488)
T ss_pred eeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence 877653211 01 1234445566777776665 68999999988
Q ss_pred eeeeeeeecCCCC--ccCC-CCceEEEEccCCC---EEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCE
Q 001403 912 IQTCRSLQTPDGV--MTLA-PSETHIQFHKDQT---RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM 984 (1084)
Q Consensus 912 ~~~~~~~~~~~~~--~~~~-~~v~~~~~s~dg~---~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~ 984 (1084)
..-.......... .... ..+..+. .-+|. .+++ +.+|.+...|..+|+.+...... ...++.+| ..
T Consensus 268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~----~~~~~~~~--~~ 340 (488)
T cd00216 268 VKWFYQTTPHDLWDYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV----EQPMAYDP--GL 340 (488)
T ss_pred EEEEeeCCCCCCcccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee----ccccccCC--ce
Confidence 5543222111100 0000 0011111 12343 3444 46899999999999988764321 11233444 23
Q ss_pred EEEE------------------eCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCc
Q 001403 985 VFTS------------------FVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1046 (1084)
Q Consensus 985 l~t~------------------~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~ 1046 (1084)
++.+ ..+|.+.-.|+.+|+.+.+...........-+.......++.. +..|.+++.||.
T Consensus 341 vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~---g~~v~~g~~dG~ 417 (488)
T cd00216 341 VYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATA---GNLVFAGAADGY 417 (488)
T ss_pred EEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEec---CCeEEEECCCCe
Confidence 3332 2467888899999998876653211000000001111112222 578999999999
Q ss_pred EEEEcCCCCCCCcccCCCCCcccCCC
Q 001403 1047 VYVIEPNEPGDTWAVLPPDEIVGDQP 1072 (1084)
Q Consensus 1047 v~vw~~~~~~~~~~~~~~~~~~~~~~ 1072 (1084)
|+.+|...-+..|...-+....+.|.
T Consensus 418 l~ald~~tG~~lW~~~~~~~~~a~P~ 443 (488)
T cd00216 418 FRAFDATTGKELWKFRTPSGIQATPM 443 (488)
T ss_pred EEEEECCCCceeeEEECCCCceEcCE
Confidence 99999988888898866655555554
No 339
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.06 E-value=7.1e-05 Score=85.15 Aligned_cols=186 Identities=14% Similarity=0.117 Sum_probs=141.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA 528 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~ 528 (1084)
.++.|+....+..+|+.+++..+...-..+.|.-|+. ++.++.+|...|+|.+-|..+.+...++..|.+.+..
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD-- 222 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD-- 222 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeeccccceee--
Confidence 5777888888889999999887776655555777754 5679999999999999999999999999999988865
Q ss_pred EcCCCCEEEEEeeCCC-----CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCC-
Q 001403 529 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK- 601 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~-----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~- 601 (1084)
|+-.|+.|++||.+.. .|..|.+||+++-+.+..+.-+. ++ .-+.|.|. ...+++++..|...+-|..+
T Consensus 223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l 298 (1118)
T KOG1275|consen 223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL 298 (1118)
T ss_pred eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence 4567899999987543 35678999999887776665554 22 45667776 45778888999999988332
Q ss_pred CeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 602 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 602 ~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++ ......+...+.+..+.++++|..++.|..+|.|.+|.-.
T Consensus 299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~ 342 (1118)
T KOG1275|consen 299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR 342 (1118)
T ss_pred CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence 111 1222222223348899999999999999999999999843
No 340
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.06 E-value=0.00034 Score=79.01 Aligned_cols=185 Identities=13% Similarity=0.148 Sum_probs=124.0
Q ss_pred EEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCE
Q 001403 729 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY 808 (1084)
Q Consensus 729 i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~ 808 (1084)
+.+.+++ ++.++.|+.+|.+++++.+.... .. + .|... ..+|.+
T Consensus 42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------------~~-~---~~s~~------~~~Gey 85 (846)
T KOG2066|consen 42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------------TN-F---DHSSS------ILEGEY 85 (846)
T ss_pred HHHHHhh--cceeeeccccceEEEEecCCccc------------------------cc-c---ccccc------ccCCce
Confidence 4444443 56688888899999887543210 00 0 02111 558999
Q ss_pred EEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC----CCcEEEEEeCCCeEEEEEcCC-c-eeeeeecccccCE
Q 001403 809 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-S-EVISKLEGHSKRV 881 (1084)
Q Consensus 809 l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~la~g~~dg~i~iwd~~~-~-~~~~~l~~h~~~V 881 (1084)
+++++ ||+|.|..+.+.+...++. ...++.+++++|+ ..+.+++|+.-| +.++.-.- | +.-..+..-.++|
T Consensus 86 ~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I 163 (846)
T KOG2066|consen 86 VASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPI 163 (846)
T ss_pred EEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccce
Confidence 99999 7999999999888877666 4568999999993 256788899888 77765321 1 1111344556899
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 957 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~ 957 (1084)
.++.|. |.++|-++.+| |+|||+.++...+ .++..............+.|.++.+ |+.|-..+|+|..++
T Consensus 164 ~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~--~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 164 HSIKWR--GNLIAWANDDG-VKVYDTPTRQRLT--NIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEec--CcEEEEecCCC-cEEEeccccceee--ccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 999995 88999998888 9999999866433 2222222221112345677776655 666777788888877
No 341
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.05 E-value=0.00023 Score=80.41 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=130.2
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~ 915 (1084)
..++|++++ +++++.|+.+|.|++++.. +.. .+...|+.. ..+|.+++||+.||+|.|-.+.+.+....
T Consensus 40 D~is~~av~---~~~~~~GtH~g~v~~~~~~-~~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 40 DAISCCAVH---DKFFALGTHRGAVYLTTCQ-GNP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hHHHHHHhh---cceeeeccccceEEEEecC-Ccc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 456777775 4799999999999999976 444 444446554 56899999999999999999988664332
Q ss_pred eeeecCCCCccCCCCceEEEEccC-----CCEEEEEeCCeEEEEEcCC-cceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 916 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 916 ~~~~~~~~~~~~~~~v~~~~~s~d-----g~~la~~~d~~i~vwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
.-++. ++.+++++|| .+.+++|+...+.++.-.= |...........++|.++.|- |.++|=++
T Consensus 109 ~df~r---------piksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 109 YDFKR---------PIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred EecCC---------cceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence 22222 5889999998 5667775443377765331 111122233347899999986 66888887
Q ss_pred CCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 990 VDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 990 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.+| |+|||+.+++.+..+.+....+. ...++..+.|.+ ...|+.| ..-+|+|..+.
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~~R----~e~fpphl~W~~--~~~LVIG-W~d~v~i~~I~ 233 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQSVR----PELFPPHLHWQD--EDRLVIG-WGDSVKICSIK 233 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCCCC----cccCCCceEecC--CCeEEEe-cCCeEEEEEEe
Confidence 665 99999999999988875542222 234555678886 3455554 56688888887
No 342
>smart00668 CTLH C-terminal to LisH motif. Alpha-helical motif of unknown function.
Probab=98.04 E-value=3.4e-06 Score=65.09 Aligned_cols=53 Identities=34% Similarity=0.595 Sum_probs=42.8
Q ss_pred hHHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCH
Q 001403 37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1084)
Q Consensus 37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~ 90 (1084)
++..++++|+.|+|+.|++.+.........+.+ .+.|.|++|+|+||++.++.
T Consensus 4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence 478899999999999999999887443322223 49999999999999998764
No 343
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=98.03 E-value=0.004 Score=71.29 Aligned_cols=256 Identities=15% Similarity=0.115 Sum_probs=141.0
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------ 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d------ 409 (1084)
.+...++||||++||.+.... |.-. .+++|.|+.++...... +.. ..-..+.|.+||+.|+....+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~--G~e~--~~l~v~Dl~tg~~l~d~--i~~--~~~~~~~W~~d~~~~~y~~~~~~~~~~ 196 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDG--GSEW--YTLRVFDLETGKFLPDG--IEN--PKFSSVSWSDDGKGFFYTRFDEDQRTS 196 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEET--TSSE--EEEEEEETTTTEEEEEE--EEE--EESEEEEECTTSSEEEEEECSTTTSS-
T ss_pred EeeeeeECCCCCEEEEEecCC--CCce--EEEEEEECCCCcCcCCc--ccc--cccceEEEeCCCCEEEEEEeCcccccc
Confidence 444688999999999965442 2221 68999999988554322 111 122349999999988776432
Q ss_pred -----CEEEEEEccCCccccceeeeeccccc--EeEEEeecCCCcEEEEEEeC-C-CcEEEEECCCC----ceeeEeccC
Q 001403 410 -----HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGD-D-KTIKVWDAVTG----SRTYSFEGH 476 (1084)
Q Consensus 410 -----g~v~iwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~l~l~s~~~-d-~~i~vwd~~~g----~~~~~~~~h 476 (1084)
..|..|.+.++..-. ...+...... ...+..++|++.+++.+.+. + ..+.+-|+..+ .....+..+
T Consensus 197 ~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~ 275 (414)
T PF02897_consen 197 DSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPR 275 (414)
T ss_dssp CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEES
T ss_pred cCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCC
Confidence 237888887764321 1133343332 56788999999633333332 2 35788888775 233444333
Q ss_pred CCcE-EEEeecccCCCcEEEEEe---cCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 477 GAPV-YSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 477 ~~~v-~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
...+ ..+... ++.+++... ..+.|...++..... ...+..+...+.-..+...+.+|+.... .++...|
T Consensus 276 ~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~-~~~~~~l 351 (414)
T PF02897_consen 276 EDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYR-ENGSSRL 351 (414)
T ss_dssp SSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEE-ETTEEEE
T ss_pred CCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEE-ECCccEE
Confidence 3333 333332 223333332 235677777776653 2234444433333333345666666554 3457789
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE--E--CCCcEEEEECCCCeEEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA--G--DDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~--~--~dg~i~iwd~~~~~~~~ 606 (1084)
.++++..+.......... .+.|..+...++++.+... + .-++++.||+.+++...
T Consensus 352 ~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~ 410 (414)
T PF02897_consen 352 RVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL 410 (414)
T ss_dssp EEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred EEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence 999998444444444433 2456666666666655442 2 34678888998887543
No 344
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.01 E-value=0.0021 Score=71.12 Aligned_cols=287 Identities=12% Similarity=0.129 Sum_probs=144.1
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-CC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-ND 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-dg 806 (1084)
.|..+.|.++..-++++...|.+.+|.+..++......... -.|... ..+.... ++
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~-----~~~~~~------------------~~~~~~~~~~ 59 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPP-----DLDYNF------------------RRFSLNNSPG 59 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE-----------------------------------------S--GGGSS-
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCc-----ccCccc------------------ccccccCCCc
Confidence 57889999999999999999999999987654321000000 000000 0000000 11
Q ss_pred CEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee--ecc------
Q 001403 807 AYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--LEG------ 876 (1084)
Q Consensus 807 ~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~--l~~------ 876 (1084)
..+-... +..++ +...+...+....+.|++++.|. =-++|+|.++|.+.|.|++....+.. +..
T Consensus 60 ~l~di~~r~~~~~~----~gf~P~~l~~~~~g~vtal~~S~--iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~ 133 (395)
T PF08596_consen 60 KLTDISDRAPPSLK----EGFLPLTLLDAKQGPVTALKNSD--IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKS 133 (395)
T ss_dssp SEEE-GGG--TT-S----EEEEEEEEE---S-SEEEEEE-B--TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS
T ss_pred ceEEehhhCCcccc----cccCchhheeccCCcEeEEecCC--CcEEEEEecCCcEEEEECCCCeEEeeccccccccccc
Confidence 1111100 00000 01122333444578999999985 44999999999999999987766544 222
Q ss_pred cccCEEEEEEcC-----CC---CEEEEEeCCCcEEEEeCCC-C-ceeeeeeeecCCCCccCCCCceEEE-EccC------
Q 001403 877 HSKRVTGLVFSD-----AL---NILVSSGGDAQIFVWDVDG-W-GIQTCRSLQTPDGVMTLAPSETHIQ-FHKD------ 939 (1084)
Q Consensus 877 h~~~V~~l~~sp-----d~---~~l~s~s~dg~I~iwd~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~-~s~d------ 939 (1084)
....|+++.|+. |+ -.|+.|...|.+.+|.+.- . ..-..........+. +.+..+. |+.+
T Consensus 134 ~~~~vt~ieF~vm~~~~D~ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~---~~i~~I~~i~~~~G~~a~ 210 (395)
T PF08596_consen 134 SSSYVTSIEFSVMTLGGDGYSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHD---SPILSIIPINADTGESAL 210 (395)
T ss_dssp ----EEEEEEEEEE-TTSSSEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS-------EEEEEETTT--B-B
T ss_pred cccCeeEEEEEEEecCCCcccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCC---CceEEEEEEECCCCCccc
Confidence 345788898882 33 5788899999999998862 1 111111111111111 1333333 3222
Q ss_pred ---------------CCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-----cCCCEEEEEeCCCcEEEEEc
Q 001403 940 ---------------QTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-----CDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 940 ---------------g~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-----~dg~~l~t~~~dg~i~vwd~ 999 (1084)
..+++++++..++++...+.+..+... ........+++- ..+..|++-..+|.|+++.+
T Consensus 211 At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SL 289 (395)
T PF08596_consen 211 ATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSL 289 (395)
T ss_dssp -BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEET
T ss_pred CchhHhhccccCCCcCcEEEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEEC
Confidence 135666789999999999888777655 222344445553 35677888999999999999
Q ss_pred CCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1000 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
...+.+.+....... ....+. ..++++ +|..++-. ....+.++.+...
T Consensus 290 P~Lkei~~~~l~~~~----d~~~~~--~ssis~-~Gdi~~~~-gpsE~~l~sv~~~ 337 (395)
T PF08596_consen 290 PSLKEIKSVSLPPPL----DSRRLS--SSSISR-NGDIFYWT-GPSEIQLFSVWGE 337 (395)
T ss_dssp TT--EEEEEE-SS-------HHHHT--T-EE-T-TS-EEEE--SSSEEEEEEEES-
T ss_pred CCchHhhcccCCCcc----cccccc--ccEECC-CCCEEEEe-CcccEEEEEEEcc
Confidence 999998877632110 111122 234565 46655554 3445555544333
No 345
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.99 E-value=0.0085 Score=64.17 Aligned_cols=229 Identities=12% Similarity=0.036 Sum_probs=111.6
Q ss_pred EEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
=+|.+||+.|+.++. ...+.+.|+.+++..+ |.... .......++++++ .++-......++--|+++++.
T Consensus 41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~ 114 (386)
T PF14583_consen 41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE 114 (386)
T ss_dssp --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence 468899988887765 4467888888886443 33332 2233466788888 444344456888889999877
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEec----------------------CCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
...+......+-...|..+.|+..++..-. ...|..-|+.+++....+. ....+.-+
T Consensus 115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~ 193 (386)
T PF14583_consen 115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV 193 (386)
T ss_dssp EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence 655555666666666665666666544321 1133444566554443333 44567788
Q ss_pred EEcCCCCEEEEEeeCCCCC---eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-----CCCcEEEEEC
Q 001403 528 AYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-----~dg~i~iwd~ 599 (1084)
.|+|....++.-+..+.-+ .+|.+.+.. |.....+..+. ....+..=-|.|||..+.--+ .+..|.-+|.
T Consensus 194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~ 271 (386)
T PF14583_consen 194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP 271 (386)
T ss_dssp EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence 8999655444433333222 234444433 33333333222 124455667999998876632 3456777888
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
.+++........ .....-.++||++++-=+.|
T Consensus 272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence 888665433321 23455567888877654444
No 346
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.99 E-value=0.0015 Score=76.18 Aligned_cols=216 Identities=14% Similarity=0.115 Sum_probs=118.0
Q ss_pred CCeEEEEEcCCCCcEEEEEe------CCC--eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCC-CcEEEEe
Q 001403 836 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWD 906 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~------~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-g~I~iwd 906 (1084)
..+.+.++|| +++.+|... .|+ .|.+++.. +.......+. ..+.-.|+|||+.|++.+.. ..+++.+
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678999999 777766554 243 55555642 3332223332 37889999999988887543 2233332
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE---EEcCCcce-e---eEeecCCCCCEEEEEEc
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTC-L---KQWFPISSVPISQATFS 979 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v---wd~~~~~~-~---~~~~~~h~~~v~~l~fs 979 (1084)
-..........+..........+.|..+.|||||+.+|...+++|++ -....|+. + ..+..+-...+.++.|.
T Consensus 426 ~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~ 505 (591)
T PRK13616 426 DPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR 505 (591)
T ss_pred cCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence 21110000000000000001123699999999999999976788887 55455641 1 11222223446889999
Q ss_pred cCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 980 CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 980 ~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
.++.++ ++..++...+|.+.-.-..........+... + .+++-.| ..+.+++.+|-+.+=.-...+..|
T Consensus 506 ~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~-----v--~~vaa~~---~~iyv~~~~g~~~l~~~~~~~~~W 574 (591)
T PRK13616 506 TGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAP-----V--VAVAASP---STVYVTDARAVLQLPNSDSGDQYW 574 (591)
T ss_pred cCCEEE-EEecCCCCceEEEecCCccccccCCCCccCc-----e--EEEecCC---ceEEEEcCCceEEecCCCCCCCCc
Confidence 999855 5556665666665433222111111111111 2 3466555 356677777744443333445679
Q ss_pred ccCCCCC
Q 001403 1060 AVLPPDE 1066 (1084)
Q Consensus 1060 ~~~~~~~ 1066 (1084)
...|+..
T Consensus 575 ~ev~~l~ 581 (591)
T PRK13616 575 REVPGLM 581 (591)
T ss_pred eECcccc
Confidence 8888775
No 347
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.99 E-value=0.031 Score=65.17 Aligned_cols=61 Identities=13% Similarity=0.148 Sum_probs=43.4
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH 877 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 877 (1084)
|.+.-+|+.+|+..-............... .+.+++.++.+|.++.+|.++|+.+...+-.
T Consensus 441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g 501 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG 501 (527)
T ss_pred eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence 568889999998887765433222222222 3447777888999999999999999877643
No 348
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.95 E-value=0.0017 Score=74.24 Aligned_cols=202 Identities=11% Similarity=0.114 Sum_probs=135.1
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCC-eEEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCc----
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS---- 868 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~---- 868 (1084)
-++++.+..++.|+ +|.|.+.+- +.+.++.++.+... ++.+-... +..+|++.+.|+ .|+||+++.-
T Consensus 29 sc~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~ 106 (933)
T KOG2114|consen 29 SCCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN 106 (933)
T ss_pred eEEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence 35778888888887 788777763 34455677776666 44444433 446888777665 5999998642
Q ss_pred --eee--eeecc-----cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 869 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 869 --~~~--~~l~~-----h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+++ ..+.. ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+. .+|+.+++..|
T Consensus 107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d 182 (933)
T KOG2114|consen 107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD 182 (933)
T ss_pred CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence 223 12222 345789999999999999999999999886543222222222222332 37999999999
Q ss_pred CCE-EEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 940 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 940 g~~-la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
++. +.++.-..|.+|.+............|...+.|..|++....+++++ +..+.+|+.+.......+
T Consensus 183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf 251 (933)
T KOG2114|consen 183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAF 251 (933)
T ss_pred CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeee
Confidence 988 55567788999999843323444566788888888887554355554 457999999865554333
No 349
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.91 E-value=0.0029 Score=70.95 Aligned_cols=220 Identities=10% Similarity=0.066 Sum_probs=114.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
.......+.++|+|+++++ +.+|.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.--+
T Consensus 31 ~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 31 CEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKNFK 98 (443)
T ss_dssp -SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEETTE
T ss_pred CCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEcCc
Confidence 4456788999999999999 45666777773322 21 2234456788999665 56666688899964223
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
......+... ..+..+-. |.+|...+. +.|.+||+.+.+....+... +|..+.|+++|++++..+.
T Consensus 99 ~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~----- 164 (443)
T PF04053_consen 99 NEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTK----- 164 (443)
T ss_dssp E-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-----
T ss_pred cccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeC-----
Confidence 3332233221 12333321 455555544 48999999998888877654 4889999999999999873
Q ss_pred eeEEEecCCCc-----------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEcCCCC
Q 001403 547 SFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGG 613 (1084)
Q Consensus 547 ~~i~~wd~~~~-----------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~ 613 (1084)
..+++++.+.. .....+.... ..|.+.+|..+ .++-.+.. .++. +-.|+. +..+. .
T Consensus 165 ~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--~- 233 (443)
T PF04053_consen 165 DSIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--K- 233 (443)
T ss_dssp -SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S--S-
T ss_pred CeEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC--C-
Confidence 33666654332 0122222112 46778888765 44444443 6665 333433 33332 1
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.+.-+.+.+..+.+.....++.+..+.+..
T Consensus 234 --~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 234 --PLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp ----EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred --ceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 356677777777888888888888887663
No 350
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.90 E-value=0.0052 Score=68.02 Aligned_cols=114 Identities=16% Similarity=0.120 Sum_probs=81.1
Q ss_pred ceEEEEccC-CCEEEEE-----eCC----eEEEEEcCCcce--eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 931 ETHIQFHKD-QTRFLLV-----HET----HLAIYEAEELTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 931 v~~~~~s~d-g~~la~~-----~d~----~i~vwd~~~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
..++.||-. ...+.+. .+| .-.+|++..++. +..........|.+.+++|+...|+.|+.||+|.+||
T Consensus 208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD 287 (545)
T PF11768_consen 208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD 287 (545)
T ss_pred cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence 467788763 3333331 233 255677765443 3333334588999999999999999999999999999
Q ss_pred cCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 999 ASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 999 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
...+.-... ...+.|..++||| +|..+++|+.-|.+.+||+.-+..
T Consensus 288 ~~~~~t~~~------------ka~~~P~~iaWHp-~gai~~V~s~qGelQ~FD~ALspi 333 (545)
T PF11768_consen 288 TTRGVTLLA------------KAEFIPTLIAWHP-DGAIFVVGSEQGELQCFDMALSPI 333 (545)
T ss_pred cCCCeeeee------------eecccceEEEEcC-CCcEEEEEcCCceEEEEEeecCcc
Confidence 988743311 1124566799999 589999999999999999865543
No 351
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.89 E-value=0.00058 Score=75.27 Aligned_cols=125 Identities=10% Similarity=0.085 Sum_probs=84.6
Q ss_pred CCceEEEEcCCCceeeeeccc--ccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWD--VNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d--~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
....++.||-...+-+-..-- ...|+.. -.-.+|++...+.......--.....|.|++++|+.+.|+.|+.||+|
T Consensus 206 ~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~--~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSi 283 (545)
T PF11768_consen 206 NDPLDVEFSLNQPYQIHTVEQSISVKGEPS--ADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSI 283 (545)
T ss_pred CCcEEEEccCCCCcEEEEEEEecCCCCCce--eEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeE
Confidence 366788888744333321111 0112211 234567776543222211222467899999999999999999999999
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
++||...+.. .+....-..+.++|+|+|. ++++|+..|.+.+||+.-..
T Consensus 284 iLyD~~~~~t-----~~~ka~~~P~~iaWHp~ga--i~~V~s~qGelQ~FD~ALsp 332 (545)
T PF11768_consen 284 ILYDTTRGVT-----LLAKAEFIPTLIAWHPDGA--IFVVGSEQGELQCFDMALSP 332 (545)
T ss_pred EEEEcCCCee-----eeeeecccceEEEEcCCCc--EEEEEcCCceEEEEEeecCc
Confidence 9999987632 2224445678999999999 89999999999999987543
No 352
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.85 E-value=0.0093 Score=67.11 Aligned_cols=200 Identities=16% Similarity=0.145 Sum_probs=111.5
Q ss_pred EEEecCCCCEEEEEeCC------------eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC
Q 001403 799 CFALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR 866 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~ 866 (1084)
.++.+|.|-.+|...+. .|++|+.. |+.+.++.-..+.|.++.|+. +. .|++...||.+++||+.
T Consensus 33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF 109 (410)
T ss_pred eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC
Confidence 35667777777766544 58888875 566666554448999999997 54 45567789999999986
Q ss_pred Ccee-------eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc--cCCCCceE-EEE
Q 001403 867 SSEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM--TLAPSETH-IQF 936 (1084)
Q Consensus 867 ~~~~-------~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~--~~~~~v~~-~~~ 936 (1084)
|+. +....-....+....+..+|-.+.+ .++.+.+-+--............+.... ........ ..+
T Consensus 110 -G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt--~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l 186 (410)
T PF04841_consen 110 -GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVLT--GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLL 186 (410)
T ss_pred -CceeechhhhccccCcccccccccccCCCCEEEEC--CCCeEEEEeCccccchhhccccCCCcccccccccccccceEe
Confidence 333 1111112223333344445633333 3444433322221101000001111000 00001111 345
Q ss_pred ccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 937 HKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 937 s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.+....+. ..++.+.+.+....+. . ...+++..+++||+|++||.-..+|.+.|...+-.+..+.+.
T Consensus 187 ~~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~ 255 (410)
T PF04841_consen 187 SSDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD 255 (410)
T ss_pred ecCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence 555554444 4555666444332211 1 124689999999999999999999999999877776666665
No 353
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.0017 Score=72.62 Aligned_cols=199 Identities=12% Similarity=0.142 Sum_probs=117.7
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcccee
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV 696 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~ 696 (1084)
+.--+++..+++++.|+.-|.+++|+-..+.....-.
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~------------------------------------------- 72 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN------------------------------------------- 72 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence 4455667788999999999999999877653321110
Q ss_pred cccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeec
Q 001403 697 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 697 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.+..+.+....++++..++++++..|.|.++.++.. ....
T Consensus 73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~------------- 112 (726)
T KOG3621|consen 73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRD------------- 112 (726)
T ss_pred --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCc-------------
Confidence 012234556677888888888888899988876542 1110
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEE
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI 851 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l 851 (1084)
......-...|...|++++|++|+..+.+|.+ |+|.+-.+.+. -..+.+....+.|..+.+.. +.+|
T Consensus 113 ------~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL 184 (726)
T KOG3621|consen 113 ------LDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL 184 (726)
T ss_pred ------ceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence 11111111237889999999999999999984 99988888762 11233334557787887764 4444
Q ss_pred EEEeCCCeEEEEEcCCcee--eeeecccccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001403 852 AIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 852 a~g~~dg~i~iwd~~~~~~--~~~l~~h~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~ 909 (1084)
++.. - .-.+++.+.+.. +..-.-..-.-...+|-|. .+-.+.++.-| .|+|..+-
T Consensus 185 VStl-~-r~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~ 245 (726)
T KOG3621|consen 185 VSTL-T-RCILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF 245 (726)
T ss_pred Hhhh-h-hhheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence 4332 2 233445443321 1111101111233455553 34455566666 68887663
No 354
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.82 E-value=0.0049 Score=69.17 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=120.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...+..+.++|+|++++++++|...++.....+.... +.....+|++ .++ +|+-...++|.|+.--+.+....
T Consensus 32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~-----G~g~~~vw~~-~n~-yAv~~~~~~I~I~kn~~~~~~k~ 104 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAF-----GSGLSFVWSS-RNR-YAVLESSSTIKIYKNFKNEVVKS 104 (443)
T ss_dssp SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEE-----EE-SEEEE-T-SSE-EEEE-TTS-EEEEETTEE-TT--
T ss_pred CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCccccc-----CceeEEEEec-Ccc-EEEEECCCeEEEEEcCccccceE
Confidence 3457899999999999999999999999655444332 3345788998 565 66666688999973333333233
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI 953 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v 953 (1084)
+.-. ..+..+-. |.+|...+.+ .|.+||+++++ .+....-. .|..+.||++|.++|...+..+.|
T Consensus 105 i~~~-~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~-----~i~~i~v~-----~vk~V~Ws~~g~~val~t~~~i~i 169 (443)
T PF04053_consen 105 IKLP-FSVEKIFG---GNLLGVKSSD-FICFYDWETGK-----LIRRIDVS-----AVKYVIWSDDGELVALVTKDSIYI 169 (443)
T ss_dssp ---S-S-EEEEE----SSSEEEEETT-EEEEE-TTT-------EEEEESS------E-EEEEE-TTSSEEEEE-S-SEEE
T ss_pred EcCC-cccceEEc---CcEEEEECCC-CEEEEEhhHcc-----eeeEEecC-----CCcEEEEECCCCEEEEEeCCeEEE
Confidence 3311 12333333 8888877665 79999999965 33333221 378999999999999988889999
Q ss_pred EEcCCc-----------ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce--eEEeccccccCCCCcc
Q 001403 954 YEAEEL-----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV--QCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 954 wd~~~~-----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~~~ 1020 (1084)
++.... ..+.... .-...|.+.+|-.| -++.|. .. .++- +..|+. ++.+.
T Consensus 170 l~~~~~~~~~~~~~g~e~~f~~~~-E~~~~IkSg~W~~d-~fiYtT-~~-~lkY--l~~Ge~~~i~~ld----------- 232 (443)
T PF04053_consen 170 LKYNLEAVAAIPEEGVEDAFELIH-EISERIKSGCWVED-CFIYTT-SN-HLKY--LVNGETGIIAHLD----------- 232 (443)
T ss_dssp EEE-HHHHHHBTTTB-GGGEEEEE-EE-S--SEEEEETT-EEEEE--TT-EEEE--EETTEEEEEEE-S-----------
T ss_pred EEecchhcccccccCchhceEEEE-EecceeEEEEEEcC-EEEEEc-CC-eEEE--EEcCCcceEEEcC-----------
Confidence 886533 0222211 11568889999887 455554 33 6775 555543 33333
Q ss_pred cceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1021 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1021 ~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
..++. +.+.|+ .+.+.....|+.|..+.+.-
T Consensus 233 ~~~yl--lgy~~~-~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 233 KPLYL--LGYLPK-ENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp S--EE--EEEETT-TTEEEEE-TT--EEEEE--H
T ss_pred CceEE--EEEEcc-CCEEEEEECCCCEEEEEECH
Confidence 12343 344553 47888899999999887743
No 355
>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions. The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.
Probab=97.81 E-value=3.1e-05 Score=47.77 Aligned_cols=27 Identities=33% Similarity=0.642 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhc
Q 001403 6 KDLVFLILQFLNEEGFTESAHMLERES 32 (1084)
Q Consensus 6 ~~~~rli~q~L~~~g~~~s~~~l~~Es 32 (1084)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 578999999999999999999999997
No 356
>smart00667 LisH Lissencephaly type-1-like homology motif. Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.
Probab=97.80 E-value=3e-05 Score=52.05 Aligned_cols=32 Identities=34% Similarity=0.552 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001403 4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1084)
Q Consensus 4 ~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~ 35 (1084)
.++++.++|+|||...||.+|+++|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
No 357
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.79 E-value=0.09 Score=61.33 Aligned_cols=149 Identities=9% Similarity=0.089 Sum_probs=89.7
Q ss_pred eEEEEEcCCceeeeeecccccCE---------EEEEEcCCCC---EEEEEeCCCcEEEEeCCCCceeeee------ee-e
Q 001403 859 TILIYNARSSEVISKLEGHSKRV---------TGLVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL-Q 919 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~h~~~V---------~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~~~~~~------~~-~ 919 (1084)
+|.-.|++||+....++.....+ .-+.+..+|+ .++.+..+|.+.+.|-.+|+..... .. +
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 67777999999887776422111 1222334676 7889999999999999998863210 00 0
Q ss_pred cCC---CCc---------------------cCCCC--ceEEEEccCCCEEEE-EeC------------------------
Q 001403 920 TPD---GVM---------------------TLAPS--ETHIQFHKDQTRFLL-VHE------------------------ 948 (1084)
Q Consensus 920 ~~~---~~~---------------------~~~~~--v~~~~~s~dg~~la~-~~d------------------------ 948 (1084)
... +.. ...+. =..++++|+..++.+ ..+
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 000 000 00000 023667776666654 111
Q ss_pred ---------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 949 ---------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 949 ---------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.|.-+|+.+|+...+...... ...+. ....|.+++.++.||.++.+|.++|+.+.++.
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p-~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP-LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC-CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 3577788888888776443211 11121 22345577778889999999999999998776
No 358
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.76 E-value=0.0078 Score=66.64 Aligned_cols=241 Identities=13% Similarity=0.090 Sum_probs=135.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc----------------------------------------cceeee
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------------------------------------RQQLEI 429 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~----------------------------------------~~~~~l 429 (1084)
.|+.+.|+++..-||+|...|.|.||.+...+.. .+..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 6889999999999999999999999876533211 111223
Q ss_pred ecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe--cc------CCCcEEEEeec---ccCCC---cEEE
Q 001403 430 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EG------HGAPVYSLCPH---AKENI---HFIF 495 (1084)
Q Consensus 430 ~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--~~------h~~~v~~~~~~---~~~~~---~~l~ 495 (1084)
....++|++++.|.-| +++.|..+|.+.|.|++....++.- .. ....|+++.|. ..+|+ -.++
T Consensus 83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 3346789999998555 7999999999999999888877652 22 23456777664 23343 5788
Q ss_pred EEecCCeEEEEECCC-CCceE------eecCCCCeEEEEE-EcCC---------------------CCEEEEEeeCCCCC
Q 001403 496 SISVDGKIKAWLYDS-LGARV------DYDAPGLGCTRMA-YSAN---------------------GRRLFSCGTSKEGE 546 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~d---------------------~~~l~~~~~~~~~~ 546 (1084)
.|...|.+.+|.+.- ....+ ....+..++..+. ++.+ ..++++++ +
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e 234 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E 234 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence 899999999997752 21111 1113334444443 3222 11344444 3
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEc-----CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC--CCcce
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL--PENPR 619 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~--~~v~~ 619 (1084)
..++++...+.+..+...... .....+.+- ..+..|++-..+|.|+++.+..-+.+......... ..+..
T Consensus 235 ~~irv~~~~~~k~~~K~~~~~---~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ 311 (395)
T PF08596_consen 235 SDIRVFKPPKSKGAHKSFDDP---FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS 311 (395)
T ss_dssp SEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred cceEEEeCCCCcccceeeccc---cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence 448889888777655544221 122334442 34667888889999999999999888887764221 12456
Q ss_pred EEEecCCCEEEEEECCCeEEEEE
Q 001403 620 ICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
.+++++|..++..+. ..+.++.
T Consensus 312 ssis~~Gdi~~~~gp-sE~~l~s 333 (395)
T PF08596_consen 312 SSISRNGDIFYWTGP-SEIQLFS 333 (395)
T ss_dssp -EE-TTS-EEEE-SS-SEEEEEE
T ss_pred cEECCCCCEEEEeCc-ccEEEEE
Confidence 778888886666544 3444443
No 359
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=0.012 Score=65.81 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=146.2
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC---CCeEEEEEcCCce
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSE 869 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~---dg~i~iwd~~~~~ 869 (1084)
.....+++++++..+.... ++.|.+.|..+.+......... ....++++| +++.+.++.. ++++.+.|..+++
T Consensus 74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence 3455788899988666655 5899999988777766655332 667899999 6655555544 6899999999988
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-- 946 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-- 946 (1084)
.+.....-..+ ..++++|+|+.+... ..+++|.+.|........ .. .............+.++|+|.++.+.
T Consensus 152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~ 226 (381)
T COG3391 152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVAND 226 (381)
T ss_pred EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEec
Confidence 88775433334 889999999965554 478999999977744221 11 00011111245689999999987774
Q ss_pred eC--CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEEcCCCceeEEec
Q 001403 947 HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-GTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 947 ~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~i~vwd~~~~~~~~~~~ 1009 (1084)
.+ +.+...|..++.........-......+.++|+|+++.+.... +.+.+-|..+......+.
T Consensus 227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~ 292 (381)
T COG3391 227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP 292 (381)
T ss_pred cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence 22 5899999988877665222111145678999999999888544 889999999988876655
No 360
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.74 E-value=0.0085 Score=61.35 Aligned_cols=216 Identities=12% Similarity=0.111 Sum_probs=115.0
Q ss_pred EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-ccCEEEEEEcCCCCEEEEEeCCCcEEEEeC
Q 001403 829 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDAQIFVWDV 907 (1084)
Q Consensus 829 ~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~spd~~~l~s~s~dg~I~iwd~ 907 (1084)
+.+.+-...+..++|.|+++.++++....+.|..++.. |+.+.++.-. .+..-.+++..++.++++.-.++.+.+.++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 34555666799999999667788888889999999974 7877665432 356788999988888777667899999998
Q ss_pred CCCc--eeee--eeeecCCCCccCCCCceEEEEccCCCEEEEEeC-CeEEEEEcCC---cceeeEe-------ecCCCCC
Q 001403 908 DGWG--IQTC--RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAEE---LTCLKQW-------FPISSVP 972 (1084)
Q Consensus 908 ~~~~--~~~~--~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-~~i~vwd~~~---~~~~~~~-------~~~h~~~ 972 (1084)
.... .... ..+..... ......+-.++|+|.+..|.++.+ .-..||.+.. ...+... .......
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~-~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 172 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFP-NKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD 172 (248)
T ss_dssp ----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred eccccccchhhceEEecccc-cCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecc
Confidence 4422 1111 11111111 111135889999999877777644 3355555543 1111110 0112456
Q ss_pred EEEEEEccC-CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEE
Q 001403 973 ISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 973 v~~l~fs~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw 1050 (1084)
+.++.|.|. |.+++....+..|.++| .+|+.+..+....-.. +....--.+=-|+|+| +|++.++ +.-+..+++
T Consensus 173 ~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~-gl~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 173 LSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFH-GLSKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp --EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGG-G-SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCccc-CcccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 789999884 66777777888999999 6677766554222100 0001112345688998 4655544 455555444
No 361
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.0035 Score=70.13 Aligned_cols=172 Identities=16% Similarity=0.182 Sum_probs=110.2
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe---CC-CeEEEEEcCCceeeee--ecccccCEEEEEEcCCC
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISK--LEGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~---~d-g~i~iwd~~~~~~~~~--l~~h~~~V~~l~~spd~ 890 (1084)
+.+-|.+ +.....+......+..-+|+| +++.++..+ .. ..++++++.+++.... +.++. ..-+|||||
T Consensus 175 l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~---~~P~fspDG 249 (425)
T COG0823 175 LALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN---GAPAFSPDG 249 (425)
T ss_pred EEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc---CCccCCCCC
Confidence 4444444 555555655566777888999 676655442 22 3599999998765433 34443 457899999
Q ss_pred CEEEEE-eCCCc--EEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC----eEEEEEcCCcceee
Q 001403 891 NILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLK 963 (1084)
Q Consensus 891 ~~l~s~-s~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----~i~vwd~~~~~~~~ 963 (1084)
+.|+.+ ..||. |.+.|+.++.... +....+. -+.-.|+|||+.++-.+|. .|.+++.+.+....
T Consensus 250 ~~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~gi------~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r 320 (425)
T COG0823 250 SKLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFGI------NTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR 320 (425)
T ss_pred CEEEEEECCCCCccEEEEcCCCCccee---cccCCcc------ccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE
Confidence 988855 44554 6667777755211 2333332 3367899999999985442 48888888766544
Q ss_pred EeecCCCCCEEEEEEccCCCEEEEEeCC-Cc--EEEEEcCCCce
Q 001403 964 QWFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1004 (1084)
Q Consensus 964 ~~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~--i~vwd~~~~~~ 1004 (1084)
....+ +.-....+||||++++..+.. |. |.+.++.++..
T Consensus 321 iT~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~ 362 (425)
T COG0823 321 LTFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK 362 (425)
T ss_pred eeccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence 33322 222277899999999987743 44 67777777664
No 362
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.67 E-value=0.03 Score=64.11 Aligned_cols=246 Identities=14% Similarity=0.129 Sum_probs=127.2
Q ss_pred CeEEEEEcCCCCEEEEE-eCCC----EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---------
Q 001403 390 SVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--------- 455 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~-~~dg----~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~--------- 455 (1084)
.+...++||||+++|.+ +..| .++++|+.+|+.+.. .+... ....++|.+|++. ++.+...
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccCC
Confidence 44468899999999977 3333 599999999965432 11111 1223999999985 3344322
Q ss_pred -CCcEEEEECCCCcee--eEeccCCCc--EEEEeecccCCCcEEEEEecCC----eEEEEECCCC----CceEeecCCCC
Q 001403 456 -DKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISVDG----KIKAWLYDSL----GARVDYDAPGL 522 (1084)
Q Consensus 456 -d~~i~vwd~~~g~~~--~~~~~h~~~--v~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~----~~~~~~~~~~~ 522 (1084)
...|+.|.+.++..- ..+...... ...+.. +.|+++++..+..+ .+.+.++... .....+.....
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~--s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~ 277 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSR--SKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRED 277 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE---TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSS
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEe--cCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCC
Confidence 234888888776432 334443333 344555 56777776544332 3666677654 12223322222
Q ss_pred eE-EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEE-ECCC--cEE
Q 001403 523 GC-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDH--VIK 595 (1084)
Q Consensus 523 ~i-~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg--~i~ 595 (1084)
.+ ..+... +..++..+..+...+.|...++.+... ...+..+. ..+.-..+...+.+|+.. ..++ .|+
T Consensus 278 ~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~---~~~~l~~~~~~~~~Lvl~~~~~~~~~l~ 352 (414)
T PF02897_consen 278 GVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED---EDVSLEDVSLFKDYLVLSYRENGSSRLR 352 (414)
T ss_dssp S-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S---SSEEEEEEEEETTEEEEEEEETTEEEEE
T ss_pred ceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC---CceeEEEEEEECCEEEEEEEECCccEEE
Confidence 33 333332 444444444444567788888876652 22333333 322223333345556553 3333 578
Q ss_pred EEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC----CCeEEEEEcCCCCe
Q 001403 596 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS 648 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~----dg~i~iwd~~~~~~ 648 (1084)
++++..+.....+..... ..|..+...+++..+..... -+++..||+.+++.
T Consensus 353 v~~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~ 408 (414)
T PF02897_consen 353 VYDLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL 408 (414)
T ss_dssp EEETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred EEECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence 899984555555544332 22444444455554433322 25788888887754
No 363
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.63 E-value=0.12 Score=57.96 Aligned_cols=250 Identities=13% Similarity=0.121 Sum_probs=161.2
Q ss_pred CeEEEEEcCCCCEEEEEeCCC-EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGSLLGVAYSKH-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg-~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
....+...|+|..+....... .+.+-+.... .... ....-...-..++.++++.. ..++...++.|.+.|..+.+
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n-~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~ 107 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSN-TVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT 107 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccc-eeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence 555688889886665553222 3444444411 1111 11111133457788888886 45555557899999988777
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEec---CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
......--. ....+++.+ +++.++.+.. ++++.+.|-.+............+ ..++++|+|+.++.+.. .
T Consensus 108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~---~ 180 (381)
T COG3391 108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNS---D 180 (381)
T ss_pred eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEec---C
Confidence 776654222 445667744 5555655544 688888888877776664433334 89999999998888762 3
Q ss_pred CeeEEEecCCCceEeeeeecc--ccccCceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCCCCCCcceE
Q 001403 546 ESFLVEWNESEGAIKRTYQGL--QLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~--~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v 620 (1084)
++.|.+.|..+....+ -... .........+.++|+++.+.+.... +.+.+.|..++.........+.. ....+
T Consensus 181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v 258 (381)
T COG3391 181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV 258 (381)
T ss_pred CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence 7789999977766653 1100 1112345778999999977775433 69999999998877763222222 34678
Q ss_pred EEecCCCEEEEEECC-CeEEEEEcCCCCeeeec
Q 001403 621 CFNKNGTLLAVIANE-NRIKILETPESNSVDAA 652 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~d-g~i~iwd~~~~~~~~~~ 652 (1084)
..+|+|+.+.+.... +.+.+.|..+.......
T Consensus 259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~ 291 (381)
T COG3391 259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG 291 (381)
T ss_pred eECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence 999999998888554 88888888877555443
No 364
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.62 E-value=0.021 Score=58.46 Aligned_cols=201 Identities=11% Similarity=0.077 Sum_probs=110.9
Q ss_pred CCCCccEEEecCCCCEEEEEeC--CeEEEEEcCCceeEEEEcCC-CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 793 SQEAVPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd--g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
-...++.++|.|+...|++..| +.|..++. +|+.++.+.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 4456999999998776666653 77877786 47888776543 35678899987 77777766668999999984321
Q ss_pred ------eeeeec-----ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEE
Q 001403 870 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 870 ------~~~~l~-----~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
....+. .+...+-.++|.|.++.|+.+-...-..++.+.. .....................+..++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 111121 2445689999999988888887777777777764 11111011111110111112578999
Q ss_pred EccCCCEEEE-E-eCCeEEEEEcCCcceeeEeecC--C------CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 936 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPI--S------SVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 936 ~s~dg~~la~-~-~d~~i~vwd~~~~~~~~~~~~~--h------~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+.|....|.+ + ....|..+| .+|+.+..+.-. . -...-.|+|.++|++.++ ++-+..+++
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence 9998655555 5 556788888 557765543221 1 135678999999976654 465555544
No 365
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.61 E-value=0.0034 Score=73.43 Aligned_cols=187 Identities=10% Similarity=0.087 Sum_probs=106.7
Q ss_pred CCccEEEecCCCCEEEEEe-------CC--eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC--------
Q 001403 795 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-------- 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-------- 857 (1084)
..+...++||||+.++... +. .+.+++.. +.. ..+.. ....+.-.|+| +|..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence 4678899999999988764 33 35555542 222 33322 22478889999 77766666432
Q ss_pred ----CeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEE---EeCCCCceeeeeeeecCCCCccCCCC
Q 001403 858 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 858 ----g~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
+.+.+.+++.++... ...+.|..+.|||||+++|... ++.|.+ -....|+...........+.. ..
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~ 498 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT 498 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence 234444554443322 2346799999999999998776 477777 444444422211111111111 13
Q ss_pred ceEEEEccCCCEEEEEeCCeEEEEEcC-CcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001403 931 ETHIQFHKDQTRFLLVHETHLAIYEAE-ELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLS 995 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~d~~i~vwd~~-~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~ 995 (1084)
+.++.|..++.+++...++...+|.+. .|..... ..+ ...++..|+-+++ .++.+..+|.+.
T Consensus 499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred cccceEecCCEEEEEecCCCCceEEEecCCccccc-cCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 578999999997655443433344433 1332222 122 2567777877763 455555666443
No 366
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.61 E-value=0.033 Score=55.67 Aligned_cols=267 Identities=16% Similarity=0.149 Sum_probs=148.2
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCE-EEEEECCCc-EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
|+++....... .-..++|+|.... ++.+-.-|+ ..++|..+.+...++......-..-.-+|||||.+|...-+
T Consensus 58 Gk~v~~~~lpa----R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEn 133 (366)
T COG3490 58 GKIVFATALPA----RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATEN 133 (366)
T ss_pred Cceeeeeeccc----ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecC
Confidence 55554443322 3455778887543 444655555 56789988887777654433222334579999999987654
Q ss_pred C-----CeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 635 E-----NRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 635 d-----g~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
| |.|-|||...+ +.+..+..
T Consensus 134 dfd~~rGViGvYd~r~~fqrvgE~~t------------------------------------------------------ 159 (366)
T COG3490 134 DFDPNRGVIGVYDAREGFQRVGEFST------------------------------------------------------ 159 (366)
T ss_pred CCCCCCceEEEEecccccceeccccc------------------------------------------------------
Confidence 3 67888887643 11111110
Q ss_pred eecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEe-eccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
|.-....+.+.+||+.++.+.. -|..- ++...+...+... -++.+.|..+|..+....
T Consensus 160 ----------------~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsMe---PSlvlld~atG~liekh~ 218 (366)
T COG3490 160 ----------------HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSME---PSLVLLDAATGNLIEKHT 218 (366)
T ss_pred ----------------CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhcC---ccEEEEeccccchhhhcc
Confidence 2222345667777776655432 23332 2222221111111 124456667777666666
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEe-CCe-----EEEEEcCCceeEEEEcCC-------CCCeEEEEEcCCCCcEEEEE
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSAS-GGV-----ISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIG 854 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~-----i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~la~g 854 (1084)
++...+...+..++..+||..++.+. .|. --+=-...++.+.-+.-. ...|-+++.+.+++-..++.
T Consensus 219 Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTS 298 (366)
T COG3490 219 LPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTS 298 (366)
T ss_pred CchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEec
Confidence 66444677888999999998877664 111 111111234444333322 24577888887455555555
Q ss_pred eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 855 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
-..+...+||..+|..+..-.- .....++- ...-++..+.+|.+.++.
T Consensus 299 P~GN~~vi~da~tG~vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 299 PRGNRAVIWDAATGAVVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred CCCCeEEEEEcCCCcEEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence 5666888999999987654321 11222322 333456666778888774
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.48 E-value=0.058 Score=60.76 Aligned_cols=187 Identities=12% Similarity=0.117 Sum_probs=101.4
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
+.+.++.|+.+.++++...+|.++++|+.... .+....-....+.+..+.. +|-.+ -..++.+.+.+--..
T Consensus 81 ~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~-~Givv--Lt~~~~~~~v~n~~~ 157 (410)
T PF04841_consen 81 GRIVGMGWTDDEELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYK-NGIVV--LTGNNRFYVVNNIDE 157 (410)
T ss_pred CCEEEEEECCCCeEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCC-CCEEE--ECCCCeEEEEeCccc
Confidence 78999999999999988899999999986322 1111111112222333433 45333 334555554432221
Q ss_pred e-eeeee---cc-------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEc
Q 001403 869 E-VISKL---EG-------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH 937 (1084)
Q Consensus 869 ~-~~~~l---~~-------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 937 (1084)
. ....+ .+ +.....-..++.+....+....++.+.+-+-...+ .... .+.+..+++|
T Consensus 158 ~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~--------~i~~----~~~i~~iavS 225 (410)
T PF04841_consen 158 PVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFK--------QIDS----DGPIIKIAVS 225 (410)
T ss_pred cchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccccc--------cccC----CCCeEEEEEC
Confidence 1 11111 11 11100002344455555555555555544333210 0111 1368999999
Q ss_pred cCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 938 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 938 ~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
|+|+++|. ..+|.+.+.+..-.+....+...-......+.|..++..++.- ...+.+..
T Consensus 226 png~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~dav~l~~--~~~l~lvg 285 (410)
T PF04841_consen 226 PNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDAVVLSW--EDELLLVG 285 (410)
T ss_pred CCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCcEEEEe--CCEEEEEC
Confidence 99999999 6778999998776666666544434566777777665443332 23444444
No 368
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.45 E-value=0.058 Score=57.76 Aligned_cols=235 Identities=10% Similarity=0.121 Sum_probs=133.1
Q ss_pred cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCC
Q 001403 736 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 815 (1084)
Q Consensus 736 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg 815 (1084)
..++.|+.|+.+| +.+++...... . ... .....|..+.+.++-..+++-+|+
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~ 56 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------P-TRI------LKLSSITQLSVLPELNLLLVLSDG 56 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc--------------------c-eeE------eecceEEEEEEecccCEEEEEcCC
Confidence 4567788888888 77777511100 0 000 133348999999998999998999
Q ss_pred eEEEEEcCCceeEEEE--------------cCCCCCeEEEE--EcCCCCcEEEEEeCCCeEEEEEcCCc-----eeeeee
Q 001403 816 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL 874 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~la~g~~dg~i~iwd~~~~-----~~~~~l 874 (1084)
.+.++++......... ......+...+ -...+...|+++. ...|.+|..... +..+++
T Consensus 57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~ 135 (275)
T PF00780_consen 57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI 135 (275)
T ss_pred ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence 9999999765443311 11223344444 1122444555555 448888877653 344454
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC----CCccCCCCceEEEEccCCCEEEEEeCCe
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH 950 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~~~~s~dg~~la~~~d~~ 950 (1084)
. -.+.+.+++|. ++.++.|..++ ..+.|+.++............ .......++..+.. +++.+|++ .+..
T Consensus 136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~ 209 (275)
T PF00780_consen 136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNI 209 (275)
T ss_pred E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecce
Confidence 4 34778999998 56677776555 889999976643321111111 00000012333333 34566654 3333
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
-.+.|. .|+..+.....-.....++++. ..||+..+. +.|.||++.+|+++..+.
T Consensus 210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP 264 (275)
T ss_pred EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence 333333 3443331011113455666664 448887655 569999999999987776
No 369
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.39 E-value=0.12 Score=55.38 Aligned_cols=231 Identities=11% Similarity=0.124 Sum_probs=130.5
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-----
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----- 472 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~----- 472 (1084)
..++.|+.|..+| +.+++......... . .+...|..+...++-+ .++.-+ |+.+.++++..-.....
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~---i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSKPTR---I-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcccee---E-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence 3578999999999 99999833322221 1 2333499999999877 444443 59999999875433321
Q ss_pred ---------eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-----CceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 473 ---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 473 ---------~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
-......+...+......+...+.......|.+|.+... ....++..+ ..+..++|. ++.++.
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence 011223344444112223344455555668888887663 233344333 467788887 566666
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeecccc---------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--E
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T 607 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~ 607 (1084)
+.. ....+.|+.++.....+..... ...++..+.. +++.+|++. |..-.+.|. .|+..+ .
T Consensus 154 ~~~-----~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~ 224 (275)
T PF00780_consen 154 GTS-----KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST 224 (275)
T ss_pred EeC-----CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence 652 2388889987766544422210 0123333333 334555543 222223333 444333 2
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+.-.. ....+++. ..++++... +.|.||++.+++.++.+..
T Consensus 225 i~W~~---~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~ 265 (275)
T PF00780_consen 225 IQWSS---APQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL 265 (275)
T ss_pred EEcCC---chhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence 22222 23455554 446766655 5699999999998887764
No 370
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.36 E-value=0.033 Score=59.34 Aligned_cols=233 Identities=14% Similarity=0.094 Sum_probs=128.4
Q ss_pred cccCccccCCCCCCCCcchhhhcccccCCCccCCC--ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccc
Q 001403 288 TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDF--PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIR 365 (1084)
Q Consensus 288 ~~p~~~~~s~~~fsP~~s~~~~~f~~~~~~~~~~~--p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~ 365 (1084)
.......+..++|.|+.+.+ .|-......+..+ .....+.+.....-...+.+...|.++++. .
T Consensus 20 ~~~~~~~gEgP~w~~~~~~L--~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~~------------~ 85 (307)
T COG3386 20 LDKGATLGEGPVWDPDRGAL--LWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIACE------------H 85 (307)
T ss_pred eecccccccCccCcCCCCEE--EEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEEc------------c
Confidence 34455566778888888755 2211111111111 122333333333234445556666666653 4
Q ss_pred eEEEEEcCCccc-cceeeeecCC-CCCeEEEEEcCCCCEEEEEeC-----C----CEEEEEEcc-CCccccceeeeeccc
Q 001403 366 NFKVWDIGACSM-LFKTALVRDP-GVSVNRVVWSPDGSLLGVAYS-----K----HIVQLYAYH-GGSDARQQLEIDAHV 433 (1084)
Q Consensus 366 ~v~iwd~~~~~~-~~~~~~~~~h-~~~V~~v~fspdg~~las~~~-----d----g~v~iwd~~-~~~~~~~~~~l~~h~ 433 (1084)
.+.+++.++... ........+. ...-+.+...|+|.+-++... . ..-.||-+. .+...+ .+..|-
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~---l~~~~~ 162 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVR---LLDDDL 162 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEE---eecCcE
Confidence 556666654443 1111112222 245667889999987776543 1 112455555 444333 344555
Q ss_pred ccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC--Cce-----eeEeccCCCcEEEEeecccCCCcEEEEEecCC-eEEE
Q 001403 434 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT--GSR-----TYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-KIKA 505 (1084)
Q Consensus 434 ~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~--g~~-----~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-~i~i 505 (1084)
..-+.|+||||++. +.++-+..+.|.-|++.. +.. ...+....+..-.++. +.+|.+.+++...| .|..
T Consensus 163 ~~~NGla~SpDg~t-ly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~v--DadG~lw~~a~~~g~~v~~ 239 (307)
T COG3386 163 TIPNGLAFSPDGKT-LYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAV--DADGNLWVAAVWGGGRVVR 239 (307)
T ss_pred EecCceEECCCCCE-EEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEE--eCCCCEEEecccCCceEEE
Confidence 56678999999984 444455567888887652 211 1122223344444555 55666665555554 8999
Q ss_pred EECCCCCceEeecCCCCeEEEEEEc-CCCCEEEEEee
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGT 541 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s-~d~~~l~~~~~ 541 (1084)
|+.+ ++....+..+...+++++|- ++.+.|++.+.
T Consensus 240 ~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs~ 275 (307)
T COG3386 240 FNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYITSA 275 (307)
T ss_pred ECCC-CcEEEEEECCCCCCccceEeCCCcCEEEEEec
Confidence 9988 77777777776777788874 45666665553
No 371
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0016 Score=68.25 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=83.9
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccc-ccccCccccchhhhHH
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFEI 76 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~l 76 (1084)
+..+|..++...|..+.+..|-+|+|... ++.++.+++.+|+-.-|++.+..- ..+.+. ..++-|.+
T Consensus 119 ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~L 196 (394)
T KOG2817|consen 119 LNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFKL 196 (394)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHHH
Confidence 58899999999999999999999999864 279999999999999999998764 222222 22388999
Q ss_pred HHhHHHhhhcCCCHH--HHHHHHHhhccccCCCC
Q 001403 77 RKQNFFEALDGHDIA--KALNILKKDLKDFAPGN 108 (1084)
Q Consensus 77 ~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~ 108 (1084)
..+.|++++..|... +|+...|+.++|+....
T Consensus 197 h~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~ 230 (394)
T KOG2817|consen 197 HSLHFLSLIRGGKSDQREALRYARTHFAPFVADH 230 (394)
T ss_pred HHHHHHHHHhcCCcCcHHHHHHHHHhcCccccch
Confidence 999999999998877 99999999999996544
No 372
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.29 E-value=0.016 Score=57.81 Aligned_cols=190 Identities=12% Similarity=0.086 Sum_probs=116.3
Q ss_pred ccccCCCccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCC
Q 001403 311 FQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 390 (1084)
Q Consensus 311 f~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~ 390 (1084)
|+......+.-++....+.+-||. .|||||++|...-.|...+. |.|-|||....-... ..+..|.-.
T Consensus 96 fD~~~~~~pv~~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~~r----GViGvYd~r~~fqrv--gE~~t~GiG 163 (366)
T COG3490 96 FDPNGAQEPVTLVSQEGRHFYGHG------VFSPDGRLLYATENDFDPNR----GVIGVYDAREGFQRV--GEFSTHGIG 163 (366)
T ss_pred ECCCCCcCcEEEecccCceeeccc------ccCCCCcEEEeecCCCCCCC----ceEEEEeccccccee--cccccCCcC
Confidence 343334444445566667777886 79999999999766655554 899999998433322 225567777
Q ss_pred eEEEEEcCCCCEEEEEeC------------------CCEEEEEEccCCccccceeeee--cccccEeEEEeecCCCcEEE
Q 001403 391 VNRVVWSPDGSLLGVAYS------------------KHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISV 450 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~------------------dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l 450 (1084)
...+.+.+||+.++.+.. .-++.+-|..+|+.+.+. ++. -+.-.|..++..+||. .+
T Consensus 164 pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh-~Lp~~l~~lSiRHld~g~dgt--vw 240 (366)
T COG3490 164 PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKH-TLPASLRQLSIRHLDIGRDGT--VW 240 (366)
T ss_pred cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhc-cCchhhhhcceeeeeeCCCCc--EE
Confidence 888999999999998743 123566676777765533 344 4556789999999998 44
Q ss_pred EEEeCCCc-----EEEEECCCCceeeEec-------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe
Q 001403 451 ITCGDDKT-----IKVWDAVTGSRTYSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 451 ~s~~~d~~-----i~vwd~~~g~~~~~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 516 (1084)
+.+-..|. -.|=-...|+.+.-+. .....|-+++.+- .++...+|.-..+...+||..++.....
T Consensus 241 fgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~glV~lTSP~GN~~vi~da~tG~vv~~ 317 (366)
T COG3490 241 FGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDGLVALTSPRGNRAVIWDAATGAVVSE 317 (366)
T ss_pred EEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCCeEEEecCCCCeEEEEEcCCCcEEec
Confidence 44432221 1111112333333221 1223456666642 2444444555556688999988776543
No 373
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.26 E-value=0.016 Score=68.62 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=101.8
Q ss_pred CCcEEEEE-eCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCC-------CCEEEEEeCCCcEEEEeCCCCceeeeee
Q 001403 847 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDA-------LNILVSSGGDAQIFVWDVDGWGIQTCRS 917 (1084)
Q Consensus 847 d~~~la~g-~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd-------~~~l~s~s~dg~I~iwd~~~~~~~~~~~ 917 (1084)
+.++|+.- .....|+-.|+..|+.+..+..|... |.. |.|+ ......|-.+..+..||..-.. .++
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~ 566 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKL 566 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCC---Cce
Confidence 44454443 35678999999999999999987654 544 4443 2234556677889999987532 112
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
+.............+|++-+.+|.+.+.+.+|.|++||- .|..-.+.+++-..+|.+|..+.||++|+..+ +..+.++
T Consensus 567 v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi 644 (794)
T PF08553_consen 567 VDSQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLI 644 (794)
T ss_pred eeccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEE
Confidence 211111111223577888888888777789999999994 45556666767789999999999999998664 6678888
Q ss_pred EcC
Q 001403 998 EAS 1000 (1084)
Q Consensus 998 d~~ 1000 (1084)
+..
T Consensus 645 ~t~ 647 (794)
T PF08553_consen 645 DTL 647 (794)
T ss_pred EEe
Confidence 753
No 374
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.26 E-value=0.096 Score=57.87 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=56.4
Q ss_pred CCCCccEEEecCCCCEEEEEeC-CeEEEEEcCCceeEEEEcCCCCCeEE-EE-EcCCC---------------Cc-EEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATS-LA-FNPHD---------------NN-VIAI 853 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~~~~~~~~~~i~~-l~-~s~~d---------------~~-~la~ 853 (1084)
....+.+++.+|++++.|+.++ |.|.++|+.++..++..++..+.=.. +. ..+.+ .. +++-
T Consensus 306 ~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIy 385 (415)
T PF14655_consen 306 SKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIY 385 (415)
T ss_pred CCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEE
Confidence 3456788999999998888764 99999999999888887765432111 11 11100 11 3344
Q ss_pred EeCCCeEEEEEcCCceeeeeec
Q 001403 854 GMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
+-.-|.|.||.+.+|..+..+.
T Consensus 386 aprRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 386 APRRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred eccCCeEEEEecCCCCEEEEEE
Confidence 5678899999998887665554
No 375
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=97.17 E-value=0.5 Score=55.66 Aligned_cols=227 Identities=12% Similarity=0.022 Sum_probs=114.1
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-C-----EEEEEEccCCccccceeeeecccccEeE
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-H-----IVQLYAYHGGSDARQQLEIDAHVGNVND 438 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d-g-----~v~iwd~~~~~~~~~~~~l~~h~~~V~~ 438 (1084)
..+..+|..+........ +. +...-.++++. +|...++|+.| | ++..||..+++-.. ...+.........
T Consensus 301 ~~ve~yd~~~~~w~~~a~-m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~-~a~M~~~R~~~~v 376 (571)
T KOG4441|consen 301 RSVECYDPKTNEWSSLAP-MP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTP-VAPMNTKRSDFGV 376 (571)
T ss_pred ceeEEecCCcCcEeecCC-CC-cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceec-cCCccCcccccee
Confidence 667777777653332221 11 12223333433 46788888888 3 57888888765222 1122222222222
Q ss_pred EEeecCCCcEEEEEEeCCC-----cEEEEECCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCC------eEEE
Q 001403 439 LAFSAPCKQISVITCGDDK-----TIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG------KIKA 505 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~-----~i~vwd~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~i 505 (1084)
.. -+|. +.|.||.|| +|..||..+.+-- ..+.........+.+ +|.+.+.|+.++ ++..
T Consensus 377 ~~--l~g~--iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~----~g~iYi~GG~~~~~~~l~sve~ 448 (571)
T KOG4441|consen 377 AV--LDGK--LYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVL----GGKLYIIGGGDGSSNCLNSVEC 448 (571)
T ss_pred EE--ECCE--EEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEE----CCEEEEEcCcCCCccccceEEE
Confidence 22 2565 677888886 4778887766432 212111112222222 567778887664 4667
Q ss_pred EECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
||..+..-.....-.......-.-.-++...+.|+.++. ....|..||..+.+....- ........+..+.. ++..
T Consensus 449 YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~-~m~~~rs~~g~~~~--~~~l 525 (571)
T KOG4441|consen 449 YDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVA-PMTSPRSAVGVVVL--GGKL 525 (571)
T ss_pred EcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcc-cCccccccccEEEE--CCEE
Confidence 777665433322222221111122345666666665431 1334788998876654432 11111122222222 4566
Q ss_pred EEEEECCC-----cEEEEECCCCeEEE
Q 001403 585 ILAAGDDH-----VIKIWDMNKVQLLT 606 (1084)
Q Consensus 585 l~~~~~dg-----~i~iwd~~~~~~~~ 606 (1084)
.++|+.|| +|..||..+.+...
T Consensus 526 y~vGG~~~~~~l~~ve~ydp~~d~W~~ 552 (571)
T KOG4441|consen 526 YAVGGFDGNNNLNTVECYDPETDTWTE 552 (571)
T ss_pred EEEecccCccccceeEEcCCCCCceee
Confidence 67777665 46667766655443
No 376
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.14 E-value=0.03 Score=61.44 Aligned_cols=215 Identities=11% Similarity=0.113 Sum_probs=116.8
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCC----CCEEEEEe----------C-CeEEEEEcCCc----eeEEEE-
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN----DAYLFSAS----------G-GVISLYIVMTF----KTILTI- 831 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d----g~~l~~~s----------d-g~i~vwd~~~~----~~~~~~- 831 (1084)
+++.|..+...+....+...++...+..+.+..+ ..++++|. . |.|.++++... ..+..+
T Consensus 4 i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~ 83 (321)
T PF03178_consen 4 IRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIH 83 (321)
T ss_dssp EEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEE
T ss_pred EEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEE
Confidence 3445555555455555543122222233334332 46777764 1 77999999884 122211
Q ss_pred -cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce-eeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 832 -MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 832 -~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~-~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
....++|++++--. ++ |+++. .+.|++|++...+ ....-.- ....++++... +.+++.|+....|.++..+
T Consensus 84 ~~~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~ 157 (321)
T PF03178_consen 84 STEVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD 157 (321)
T ss_dssp EEEESS-EEEEEEET--TE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred EEeecCcceEhhhhC--CE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence 12457788887763 44 44444 4789999998877 4332221 22355555554 6699999988889888655
Q ss_pred CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC-------cc-eeeEeecCC-CCCEEEE--
Q 001403 909 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-------LT-CLKQWFPIS-SVPISQA-- 976 (1084)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~-------~~-~~~~~~~~h-~~~v~~l-- 976 (1084)
...... ..+...... ..++++.|-+|+..++++ .+|.+.++.... +. .+.....-| ...|+++
T Consensus 158 ~~~~~l-~~va~d~~~----~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~ 232 (321)
T PF03178_consen 158 EENNKL-ILVARDYQP----RWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRR 232 (321)
T ss_dssp TTTE-E-EEEEEESS-----BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE
T ss_pred ccCCEE-EEEEecCCC----ccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEE
Confidence 422111 122221111 258899998776655554 678899888752 22 222222222 5677777
Q ss_pred -EEcc--CCC------EEEEEeCCCcEEEE
Q 001403 977 -TFSC--DCR------MVFTSFVDGTLSIH 997 (1084)
Q Consensus 977 -~fs~--dg~------~l~t~~~dg~i~vw 997 (1084)
.+.| .+. .++.++.+|.|.+.
T Consensus 233 ~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 233 GSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp --SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred EEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 5555 222 37778899998843
No 377
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.10 E-value=0.13 Score=54.77 Aligned_cols=214 Identities=11% Similarity=0.041 Sum_probs=124.4
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~ 519 (1084)
.|.++... ++.+--..+.|.-|+..+|+.. .+. +.+.+.++... + .+..|+++... +.+++.+.......+..
T Consensus 31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~g--~~~~~~~~~~~~t~~~~ 103 (307)
T COG3386 31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEHG--VRLLDPDTGGKITLLAE 103 (307)
T ss_pred cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEccc--cEEEeccCCceeEEecc
Confidence 46677664 3455556788899998776432 222 22223333321 2 22344444332 34455554444222211
Q ss_pred -----CCCeEEEEEEcCCCCEEEEEee-----CC--CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 520 -----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 520 -----~~~~i~~~~~s~d~~~l~~~~~-----~~--~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
...........|+|.+.+.... .. ...+.++.+|. .+..++.+..+- ..-+.++||||++.++.
T Consensus 104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~ 179 (307)
T COG3386 104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV 179 (307)
T ss_pred ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence 1124556788899888776543 11 12345666665 466666665544 45678999999988887
Q ss_pred EEC-CCcEEEEECCC--CeE---EEEEcCCCCCCCcceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeeecccccccee
Q 001403 588 AGD-DHVIKIWDMNK--VQL---LTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR 660 (1084)
Q Consensus 588 ~~~-dg~i~iwd~~~--~~~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~i~ 660 (1084)
+.. .+.|.-|++.. +.. ...+.........-.++...+|.+.+++..+| .|.+|+.. ++.+..+..+...++
T Consensus 180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t 258 (307)
T COG3386 180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT 258 (307)
T ss_pred EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence 654 47788887652 211 11111111122345688888898886555554 89999988 888888887767777
Q ss_pred EEEEc
Q 001403 661 KLSVN 665 (1084)
Q Consensus 661 ~~~~~ 665 (1084)
+++|.
T Consensus 259 ~~~Fg 263 (307)
T COG3386 259 NPAFG 263 (307)
T ss_pred cceEe
Confidence 66665
No 378
>PRK10115 protease 2; Provisional
Probab=97.09 E-value=0.86 Score=55.26 Aligned_cols=248 Identities=9% Similarity=0.013 Sum_probs=125.3
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------ 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d------ 409 (1084)
.+..+.+||||++||.+... .|.. ...++|-|+.++...... +.+ .-..++|++|++.|+....+
T Consensus 128 ~l~~~~~Spdg~~la~~~d~--~G~E--~~~l~v~d~~tg~~l~~~--i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~ 198 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDF--LSRR--QYGIRFRNLETGNWYPEL--LDN---VEPSFVWANDSWTFYYVRKHPVTLLP 198 (686)
T ss_pred EEeEEEECCCCCEEEEEecC--CCcE--EEEEEEEECCCCCCCCcc--ccC---cceEEEEeeCCCEEEEEEecCCCCCC
Confidence 56778999999999997433 2322 277889999876532221 111 12569999999988776542
Q ss_pred CEEEEEEccCCccccceeeeecccccEe-EEEeecCCCcEEEEEEe-CCCcEEEEECC--CCceeeEeccCCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~-~l~~s~d~~~l~l~s~~-~d~~i~vwd~~--~g~~~~~~~~h~~~v~~~~~ 485 (1084)
..|..+++.++..-... .+........ .+..+.|++.+++.+.+ .++.+.+++.. ++.....+..-.+....+.
T Consensus 199 ~~v~~h~lgt~~~~d~l-v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 276 (686)
T PRK10115 199 YQVWRHTIGTPASQDEL-VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD- 276 (686)
T ss_pred CEEEEEECCCChhHCeE-EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-
Confidence 35788888887321111 2222222233 33345588853322222 24578888843 3442222221122222222
Q ss_pred cccCCCcEEEEEecC-C--eEEEEECCC-CCceEeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 486 HAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~d-g--~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+ ..+ .+++....+ . .|...++.. .+....+.. ....+..+.+. ++.|+.... .++...+.+++..++..
T Consensus 277 ~-~~~-~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~~~l~~~~~~~~~~- 350 (686)
T PRK10115 277 H-YQH-RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGLTSLRQINRKTREV- 350 (686)
T ss_pred e-CCC-EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCEEEEEEEcCCCCce-
Confidence 1 112 233332222 2 233344442 222223333 23467777776 445555443 23466688888754433
Q ss_pred eeee-ccccccCceEEEEEc--CCCC-EEEEEE---CCCcEEEEECCCCe
Q 001403 561 RTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 561 ~~~~-~~~~~~~~v~~~~~s--~~~~-~l~~~~---~dg~i~iwd~~~~~ 603 (1084)
..+. ... ..+..+.++ +++. .+++.+ .-+.++.+|..+++
T Consensus 351 ~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 351 IGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 3332 111 123333344 4444 333332 45778888988765
No 379
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.09 E-value=0.00016 Score=79.24 Aligned_cols=204 Identities=13% Similarity=0.100 Sum_probs=128.4
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce--EeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCC
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
.+.++++....+...++.|..+|.|-+-.++..... .....+...+++++|++ |.+.||++-.....+..+.|||+.
T Consensus 58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~ 137 (783)
T KOG1008|consen 58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN 137 (783)
T ss_pred CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence 345555544445567888889999988877654322 23445566889999988 566777765444556779999998
Q ss_pred Cc--eEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC-eEEEEEcCCCCCCCcceEEEec-CCCEE
Q 001403 556 EG--AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL 629 (1084)
Q Consensus 556 ~~--~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~~~~l 629 (1084)
++ .+. ..+.+. ......+++|-.+.+.+++|.....+.++|++.. .....+. +..+..+...| .+.++
T Consensus 138 s~ltvPke~~~fs~~--~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~ 211 (783)
T KOG1008|consen 138 SLLTVPKESPLFSSS--TLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF 211 (783)
T ss_pred cccCCCccccccccc--cccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence 76 221 122221 1245568889888999999999999999998732 2222221 12356778888 77777
Q ss_pred EEEECCCeEEEEEcCCC--Ceeeecccc----ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 630 AVIANENRIKILETPES--NSVDAAGVL----SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~--~~~~~~~~~----~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
++-. ||.|.+||..-. .++..+... ...+..++++|... |...+..-..++|+
T Consensus 212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrt--------------------glla~l~RdS~tIr 270 (783)
T KOG1008|consen 212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRT--------------------GLLAVLSRDSITIR 270 (783)
T ss_pred eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCc--------------------chhhhhccCcceEE
Confidence 7665 899999994321 223322222 23477888887532 33333333446777
Q ss_pred ccccee
Q 001403 704 VEKPLF 709 (1084)
Q Consensus 704 ~w~~~~ 709 (1084)
++++..
T Consensus 271 lydi~~ 276 (783)
T KOG1008|consen 271 LYDICV 276 (783)
T ss_pred Eecccc
Confidence 777653
No 380
>PRK10115 protease 2; Provisional
Probab=97.07 E-value=0.7 Score=56.01 Aligned_cols=245 Identities=9% Similarity=0.027 Sum_probs=123.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCC-----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----Cc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT 458 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~ 458 (1084)
-.+..+.+||||++||.+.+. ..|++-|+.+|+.+.. .+.+- -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 356678899999999987432 3589999998864321 12221 146999999985 33433322 46
Q ss_pred EEEEECCCC--ceeeEeccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCC--CCceEeecCCCCeEEEEEEcC
Q 001403 459 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA 531 (1084)
Q Consensus 459 i~vwd~~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~ 531 (1084)
|..+++.++ +....+........ +....+.++.+++..+.. +.+.+++.+. ......+.........+. .
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~ 277 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H 277 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence 888898888 33333433333333 222224455665544433 4688888533 222222222222222222 2
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEc
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID 609 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~ 609 (1084)
.+..++..+..+.....|...++. .++....+.... ...+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus 278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~--~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~ 354 (686)
T PRK10115 278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRE--NIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA 354 (686)
T ss_pred CCCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCC--CCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence 334555444333334456666665 232222222212 23577777763 34555566677655554332 22334433
Q ss_pred CCCCCCCcceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001403 610 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES 646 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s--~~~~-~l~~~~~---dg~i~iwd~~~~ 646 (1084)
.... ..+..+.++ +++. .+++.+. -+.+..+|..++
T Consensus 355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~ 396 (686)
T PRK10115 355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG 396 (686)
T ss_pred CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence 2111 112222334 3333 3333332 367777887765
No 381
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=97.07 E-value=1.3 Score=53.84 Aligned_cols=206 Identities=13% Similarity=0.151 Sum_probs=119.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc--------EEEEeeccc--------------CCCcEEEEEecCCeEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHAK--------------ENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~--------v~~~~~~~~--------------~~~~~l~s~s~dg~i~iw 506 (1084)
.++.++.++.|.-.|.++|+.+-++...... ...+++... ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 4666677788888888888887665432110 112222211 123478888899999999
Q ss_pred ECCCCCceEeecCCCC------------eEEEEEEcC--CCCEEEEEeeCCC------CCeeEEEecCCCceEeeeeecc
Q 001403 507 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~------------~i~~~~~s~--d~~~l~~~~~~~~------~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
|.++++....+..... ....+.-+| .+..+++++...+ .++.|+-+|..+|+.+-.+...
T Consensus 276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g 355 (764)
T TIGR03074 276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG 355 (764)
T ss_pred ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence 9988887765432211 000111112 2334555543222 2578999999999998776521
Q ss_pred cc--------------ccCce-EEEEEcCCCCEEEEEE------------------CCCcEEEEECCCCeEEEEEcCCCC
Q 001403 567 QL--------------QHNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 567 ~~--------------~~~~v-~~~~~s~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
.. ....+ ...++.++...++.+. ..+.|.-.|.++|+....++...+
T Consensus 356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h 435 (764)
T TIGR03074 356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH 435 (764)
T ss_pred CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence 10 00111 2345556555555422 235567778889998877764211
Q ss_pred ------C-CCcceEEEec-CCC---EEEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 614 ------L-PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 614 ------~-~~v~~v~~s~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
. ....-+.+.. +|+ .++.++.+|.+.++|..+++.+...+.
T Consensus 436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 0 0011122333 563 788999999999999999988766543
No 382
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.00 E-value=0.00036 Score=76.61 Aligned_cols=202 Identities=11% Similarity=0.115 Sum_probs=123.2
Q ss_pred CCceEEEEcCC--CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEe----
Q 001403 335 SSPMSMDFHPV--QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAY---- 407 (1084)
Q Consensus 335 ~~V~~v~~spd--g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~---- 407 (1084)
..+.|++.+-+ ...+|+|+.+ |.|.+-.+....-. ......+|....++++|++ |...||+|-
T Consensus 57 qy~kcva~~y~~d~cIlavG~at---------G~I~l~s~r~~hdS-s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhr 126 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSAT---------GNISLLSVRHPHDS-SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHR 126 (783)
T ss_pred CCceeehhhcCCchhhhhhcccc---------CceEEeecCCcccc-cceecccccccccccccccccHHHHHhhhhhhc
Confidence 36667766543 4577777666 77776666432211 1223556888999999998 778888883
Q ss_pred CCCEEEEEEccCCcc-ccceeeeec-ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc-eeeEeccCCCcEEEEe
Q 001403 408 SKHIVQLYAYHGGSD-ARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~-~~~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~ 484 (1084)
.|..+.|||+.++-. .+....+.+ ......+++|..|.+ ++.+|.....+.++|++... ....+ .+..+..+.
T Consensus 127 nds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~sv--nTk~vqG~t 202 (783)
T KOG1008|consen 127 NDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSV--NTKYVQGIT 202 (783)
T ss_pred ccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhh--hhhhcccce
Confidence 456799999998721 111111222 444667899998888 78889888899999987321 11111 222344455
Q ss_pred ecccCCCcEEEEEecCCeEEEEE-CCCCCce-EeecCC----CCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEecCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWL-YDSLGAR-VDYDAP----GLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd-~~~~~~~-~~~~~~----~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~wd~~ 555 (1084)
+.|- .+.++++-. ||.|.+|| ...-+.. ..+... ...+..++|.|...- ++++.. ..++|+++|+.
T Consensus 203 Vdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIrlydi~ 275 (783)
T KOG1008|consen 203 VDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIRLYDIC 275 (783)
T ss_pred ecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEEEeccc
Confidence 5442 234666555 99999999 3332222 222111 125889999996543 444443 26779999875
No 383
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.94 E-value=0.002 Score=44.09 Aligned_cols=39 Identities=36% Similarity=0.622 Sum_probs=34.6
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
++.+..+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345667778999999999999999999999999999996
No 384
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.90 E-value=0.0042 Score=68.75 Aligned_cols=93 Identities=16% Similarity=0.168 Sum_probs=75.9
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|++++....
T Consensus 21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4577889999 88899999999999999988 777888887877787 99999999999999999999999999976444
Q ss_pred eeeeecCCCCccCCCCceEEEEc
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFH 937 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s 937 (1084)
...... ...|..+.|+
T Consensus 99 ~~~~s~-------e~~is~~~w~ 114 (665)
T KOG4640|consen 99 SFLFSV-------ETDISKGIWD 114 (665)
T ss_pred cccccc-------ccchheeecc
Confidence 321111 1256777776
No 385
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.84 E-value=0.46 Score=48.54 Aligned_cols=187 Identities=9% Similarity=0.091 Sum_probs=115.8
Q ss_pred CCccEEEecCCCCEEEEEe-C--CeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 795 EAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
.-...+.|..+|.++-+.+ . ..|+.+|+.+++......-.. -.--.++.. ++++...--.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3445788878888877776 3 469999999998876654332 233445555 355666677899999999999988
Q ss_pred eeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCC
Q 001403 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET 949 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~ 949 (1084)
+.++. ..+.=+.++ .|++.|+.+.....|.++|..+-+......+....... ..+.-+.+- +|...|=. ...
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td 195 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTD 195 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSS
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCC
Confidence 88876 345567777 46777777777778999998876554433333211111 245556665 56555544 667
Q ss_pred eEEEEEcCCcceeeEeecC-----------C---CCCEEEEEEccCCCEEEEEeC
Q 001403 950 HLAIYEAEELTCLKQWFPI-----------S---SVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~-----------h---~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.|..-|..+|+....+-.. + ..-...|++.|++..|+..+.
T Consensus 196 ~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 196 RIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred eEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 7888899999887653110 1 245778999887665555443
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=96.82 E-value=0.31 Score=53.91 Aligned_cols=83 Identities=11% Similarity=0.221 Sum_probs=58.4
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC-----------------CE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ 584 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-----------------~~ 584 (1084)
..+.+++.+|++++.++. |.-|+|.++|+.++..++.++|.. +..+.-+.....+ .+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~ 381 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF 381 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence 357889999998877764 336779999999999999998876 2222222211111 12
Q ss_pred EE-EEECCCcEEEEECCCCeEEEEEcC
Q 001403 585 IL-AAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 585 l~-~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
|+ -+-.-|.|.||.+++|..+..+..
T Consensus 382 LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 382 LVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred EEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 33 366789999999999988887764
No 387
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=96.81 E-value=0.17 Score=55.45 Aligned_cols=180 Identities=15% Similarity=0.165 Sum_probs=106.3
Q ss_pred CeEEEEEcCCceeeeeeccc-ccCEEE---EEEcCC----CCEEEEEeC----------CCcEEEEeCCCCc--eeeeee
Q 001403 858 STILIYNARSSEVISKLEGH-SKRVTG---LVFSDA----LNILVSSGG----------DAQIFVWDVDGWG--IQTCRS 917 (1084)
Q Consensus 858 g~i~iwd~~~~~~~~~l~~h-~~~V~~---l~~spd----~~~l~s~s~----------dg~I~iwd~~~~~--~~~~~~ 917 (1084)
..|++.|..+.+.+..+.-. ...+++ +.|..+ ..+++.|+. .|.|.++++.... ......
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 35788888877766554321 122443 334332 467776653 2889999999841 011111
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc-eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT-CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~-~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~v 996 (1084)
+....- .++|.+++-- +.+|+++.++.|.+|++...+ ....-.......+.++... +.++++|.....+.+
T Consensus 82 i~~~~~----~g~V~ai~~~--~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~ 153 (321)
T PF03178_consen 82 IHSTEV----KGPVTAICSF--NGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSL 153 (321)
T ss_dssp EEEEEE----SS-EEEEEEE--TTEEEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEE
T ss_pred EEEEee----cCcceEhhhh--CCEEEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEE
Confidence 111111 1257777655 445888888999999998777 4443332224456666554 559999998888998
Q ss_pred EEcCCCce-eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 997 HEASNLEV-QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 997 wd~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+....... +..+. . .....+.+++.|-++ ++.+++++.+|++.++....
T Consensus 154 ~~~~~~~~~l~~va-~-------d~~~~~v~~~~~l~d-~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 154 LRYDEENNKLILVA-R-------DYQPRWVTAAEFLVD-EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTTE-EEEEE-E-------ESS-BEEEEEEEE-S-SSEEEEEETTSEEEEEEE-S
T ss_pred EEEEccCCEEEEEE-e-------cCCCccEEEEEEecC-CcEEEEEcCCCeEEEEEECC
Confidence 86654221 22222 1 112345566777653 46999999999999999864
No 388
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.78 E-value=0.63 Score=48.65 Aligned_cols=205 Identities=18% Similarity=0.158 Sum_probs=115.2
Q ss_pred CeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEe-CCCCce
Q 001403 837 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWGI 912 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd-~~~~~~ 912 (1084)
.+.+.++++ +++.+|... ....++++.... .....+.+ ..++.-.|++++...+....+...+++. ...+..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~-~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~ 100 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGG-PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTG 100 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCC-cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEecCCCcc
Confidence 688999999 677666555 333556655432 22222233 3688889999988877777677777774 333332
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----CCeEEEEEcC---Cc--cee---eEeecCCCCCEEEEEEcc
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFSC 980 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d~~i~vwd~~---~~--~~~---~~~~~~h~~~v~~l~fs~ 980 (1084)
... .+..... . ..|+.+.+||||..+|... ++.|.+--+. .+ ..+ ..........++.+.|.+
T Consensus 101 ~~~-~v~~~~~-~---~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~ 175 (253)
T PF10647_consen 101 EPV-EVDWPGL-R---GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSD 175 (253)
T ss_pred eeE-Eeccccc-C---CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecC
Confidence 211 1111111 1 1599999999999999843 6777777553 23 111 111112256889999999
Q ss_pred CCCEEEEEeCCCc-EEE-EEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCC
Q 001403 981 DCRMVFTSFVDGT-LSI-HEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1058 (1084)
Q Consensus 981 dg~~l~t~~~dg~-i~v-wd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~ 1058 (1084)
++.+++.+...+. +.. .....+... .+ +.. ......++++-++ .. +.+..++.+.- ...+..
T Consensus 176 ~~~L~V~~~~~~~~~~~~v~~dG~~~~-~l------~~~--~~~~~v~a~~~~~---~~-~~~t~~~~~~~---~~~~~~ 239 (253)
T PF10647_consen 176 DSTLVVLGRSAGGPVVRLVSVDGGPST-PL------PSV--NLGVPVVAVAASP---ST-VYVTDDGGVLQ---SRSGAS 239 (253)
T ss_pred CCEEEEEeCCCCCceeEEEEccCCccc-cc------CCC--CCCcceEEeeCCC---cE-EEEECCCcEEE---CCCCCc
Confidence 9998777665544 333 333322211 11 011 1223334444443 33 44555555443 567777
Q ss_pred cccCCCCC
Q 001403 1059 WAVLPPDE 1066 (1084)
Q Consensus 1059 ~~~~~~~~ 1066 (1084)
|...+...
T Consensus 240 W~~v~~~~ 247 (253)
T PF10647_consen 240 WREVPGGV 247 (253)
T ss_pred ceEccCCC
Confidence 88766554
No 389
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=96.77 E-value=0.15 Score=53.33 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=92.8
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE-cCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd-~~~~~~~ 871 (1084)
..+.+.++|+||+.+|... ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~ 101 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE 101 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence 3688999999999888776 5544444444444333332 233788889999 688887777777777774 3333321
Q ss_pred -eeec--ccccCEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCcee----eeeeeecCCCCccCCCCceEEEEccCCC
Q 001403 872 -SKLE--GHSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT 941 (1084)
Q Consensus 872 -~~l~--~h~~~V~~l~~spd~~~l~s~s---~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 941 (1084)
..+. .-.+.|+.+.+||||.++|... .++.|.+=-+...... ....+..... ....++.++|.+++.
T Consensus 102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~---~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP---LLSDVTDVAWSDDST 178 (253)
T ss_pred eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc---ccCcceeeeecCCCE
Confidence 1121 1122899999999999988765 3577877766543222 1111111111 123689999999999
Q ss_pred EEEEE
Q 001403 942 RFLLV 946 (1084)
Q Consensus 942 ~la~~ 946 (1084)
+++.+
T Consensus 179 L~V~~ 183 (253)
T PF10647_consen 179 LVVLG 183 (253)
T ss_pred EEEEe
Confidence 88875
No 390
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.73 E-value=0.81 Score=50.09 Aligned_cols=110 Identities=21% Similarity=0.230 Sum_probs=57.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc-cccee--eeecCCCCCeEEEEEcCC----CCEEEEEeC
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS-MLFKT--ALVRDPGVSVNRVVWSPD----GSLLGVAYS 408 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~-~~~~~--~~~~~h~~~V~~v~fspd----g~~las~~~ 408 (1084)
..++|+|.|||+++++-. . |.|.+++..... ..... .+..........++|+|+ +...++.+.
T Consensus 3 ~P~~~a~~pdG~l~v~e~-~---------G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~ 72 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVAER-S---------GRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTN 72 (331)
T ss_dssp SEEEEEEETTSCEEEEET-T---------TEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEE
T ss_pred CceEEEEeCCCcEEEEeC-C---------ceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEc
Confidence 578999999999988842 2 888888832222 11111 223445678899999994 444444332
Q ss_pred C--------CEEEEEEccCCc-cc---ccee-eeec---ccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 409 K--------HIVQLYAYHGGS-DA---RQQL-EIDA---HVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 409 d--------g~v~iwd~~~~~-~~---~~~~-~l~~---h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
. ..|.-|....+. .+ +.+. .+.. ....-..|+|.|||. +.++.+..+
T Consensus 73 ~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~ 135 (331)
T PF07995_consen 73 ADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG 135 (331)
T ss_dssp E-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred ccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence 1 235555555441 11 1110 1111 222456699999995 445444333
No 391
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.73 E-value=0.37 Score=51.06 Aligned_cols=158 Identities=11% Similarity=0.027 Sum_probs=83.4
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc
Q 001403 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 832 ~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
....+.+..+..++ |+++++++..-.-..-||--...-...-..-+..|.++.|+||+.+.+.+ ..|.|+.=+.....
T Consensus 141 ~~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 141 SETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp -S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEE
T ss_pred cCCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCc
Confidence 34457788899999 89999888765556677643211111112245789999999998776644 88888888722211
Q ss_pred eeeee-eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeec--CCCCCEEEEEEccCCCEEEEE
Q 001403 912 IQTCR-SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 912 ~~~~~-~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
..-.. ........ -.+..++|.+++...|++..|.+. .....|+.=..... .-......+.|.++.+-++.
T Consensus 219 ~~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l- 292 (302)
T PF14870_consen 219 ETWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL- 292 (302)
T ss_dssp EEE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-
Confidence 00001 11111111 247899999999999998888553 45555554333222 12567889999877655554
Q ss_pred eCCCcEEEE
Q 001403 989 FVDGTLSIH 997 (1084)
Q Consensus 989 ~~dg~i~vw 997 (1084)
+.+|.+.-|
T Consensus 293 G~~G~ll~~ 301 (302)
T PF14870_consen 293 GQDGVLLRY 301 (302)
T ss_dssp -STTEEEEE
T ss_pred CCCcEEEEe
Confidence 578887665
No 392
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.64 E-value=1.6 Score=48.60 Aligned_cols=276 Identities=13% Similarity=0.102 Sum_probs=150.5
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC-----CCCEEEEE
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFSA 812 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----dg~~l~~~ 812 (1084)
...+++|+..|.++||+-......+... +... .-..+|..++.-+ +...||+-
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~l-----------------llE~-----~l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDL-----------------LLET-----QLKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccE-----------------EEEE-----ecCCcEEEEEeccccCCCCcceEEEe
Confidence 4578889999999998753322211100 1111 1234555554322 34566666
Q ss_pred eCCeEEEEEcCC--ce-------eEEEEcCCC--CCeEEEEEcCCC----CcEEEEEeCCCeEEEEEcCCceeeeeeccc
Q 001403 813 SGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPHD----NNVIAIGMDDSTILIYNARSSEVISKLEGH 877 (1084)
Q Consensus 813 sdg~i~vwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~d----~~~la~g~~dg~i~iwd~~~~~~~~~l~~h 877 (1084)
.-..+.+|.+.. |. .+..+..|. .....++.-|.+ ..+|.+-+.||.+.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 677888887731 11 122222232 233444444322 36889999999999999776544444444
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------------------eeeeeeeecCCCCccCCCCceEEEE
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------------------IQTCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
.--...++|.+.-..+++++.+..|.-|....-. ......+...+... .|..+.+
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l----~i~v~~~ 249 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL----DIQVVRF 249 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE----EEEEEEc
Confidence 2223447888888899999999888888764200 00001111111111 2334444
Q ss_pred ccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEE-EEcc----CC---CEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 937 HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQA-TFSC----DC---RMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 937 s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~----dg---~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.....+++-.+.++...+. +|........ .....++ .|.. ++ ..++.++.++++.||.=.+....+..
T Consensus 250 ~~~~~~IvvLger~Lf~l~~-~G~l~~~krL--d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l 326 (418)
T PF14727_consen 250 SSSESDIVVLGERSLFCLKD-NGSLRFQKRL--DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL 326 (418)
T ss_pred CCCCceEEEEecceEEEEcC-CCeEEEEEec--CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence 44555566656667777765 3544333221 1222222 2221 22 24777889999999986665555443
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
. ..+| ++.++.-++-...|++-+.+|.+.+-=+-.
T Consensus 327 ~----------~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 327 P----------HVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred C----------CCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 2 1112 233333332257899999999998876633
No 393
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=96.56 E-value=0.58 Score=51.20 Aligned_cols=239 Identities=14% Similarity=0.163 Sum_probs=120.6
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcCCcee---EEEEc----CCCCCeEEEEEcCC---CCcEEEEEeCC--------C
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTIM----PPSPTATSLAFNPH---DNNVIAIGMDD--------S 858 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---d~~~la~g~~d--------g 858 (1084)
...|+|.|||+++++-..|.|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5689999999998887789999999 44443 22331 23356799999992 24444433321 2
Q ss_pred eEEEEEcCCc-------ee-eeeecc---cccCEEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCceee
Q 001403 859 TILIYNARSS-------EV-ISKLEG---HSKRVTGLVFSDALNILVSSGGDAQ-------------IFVWDVDGWGIQT 914 (1084)
Q Consensus 859 ~i~iwd~~~~-------~~-~~~l~~---h~~~V~~l~~spd~~~l~s~s~dg~-------------I~iwd~~~~~~~~ 914 (1084)
.|.-|....+ +. +..+.. .......|+|.|||.+.++.+..+. |.-.+... ....
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 4444544433 11 122222 1223466999999988887765443 11112111 0000
Q ss_pred eeeee---------cCCCCccCCCCceEEEEccC-CCEEEE--EeCCeEEEEEcCCcce----------------e----
Q 001403 915 CRSLQ---------TPDGVMTLAPSETHIQFHKD-QTRFLL--VHETHLAIYEAEELTC----------------L---- 962 (1084)
Q Consensus 915 ~~~~~---------~~~~~~~~~~~v~~~~~s~d-g~~la~--~~d~~i~vwd~~~~~~----------------~---- 962 (1084)
..... -..|+. ....++|.|. |.+.++ +.+..=.|..+..|.- .
T Consensus 162 dnP~~~~~~~~~~i~A~GlR----N~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~ 237 (331)
T PF07995_consen 162 DNPFVGDDGADSEIYAYGLR----NPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAP 237 (331)
T ss_dssp TSTTTTSTTSTTTEEEE--S----EEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGS
T ss_pred CCccccCCCceEEEEEeCCC----ccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCcccccc
Confidence 00000 000111 2468999999 777776 4443222222222110 0
Q ss_pred -------eEeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 963 -------KQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 963 -------~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
..+...+...+..+.|-. +|.++++.-..+.|....+..+..+..... .. . .-..+++.+
T Consensus 238 ~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~---~~~~r~~~v 311 (331)
T PF07995_consen 238 SCPGFVPPVFAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL-G---GFGGRPRDV 311 (331)
T ss_dssp S-TTS---SEEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC-T---TSSS-EEEE
T ss_pred CCCCcCccceeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc-c---cCCCCceEE
Confidence 001112345677777753 456777666667788888775533222220 11 1 112246788
Q ss_pred EECCCCCCEEEEEeCCCcEE
Q 001403 1029 AAHPLKPTQFAVGLTNGEVY 1048 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg~v~ 1048 (1084)
++.| ||.+.++.+.+|.|+
T Consensus 312 ~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 312 AQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp EEET-TSEEEEEE-TTTTEE
T ss_pred EEcC-CCeEEEEECCCCeEe
Confidence 9999 688988888899875
No 394
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.54 E-value=0.19 Score=59.06 Aligned_cols=234 Identities=11% Similarity=0.016 Sum_probs=124.7
Q ss_pred CCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC------CcEEEEECCC
Q 001403 399 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT 466 (1084)
Q Consensus 399 dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d------~~i~vwd~~~ 466 (1084)
.+..++.|+.+ ..+..+|..+++-.. ...+. +...-.+++... +. +.++||.| .++..||..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~ 358 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT 358 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence 35566666655 357888888764221 11222 222233445543 44 67788888 3577888887
Q ss_pred Cceee--EeccCCCcEEEEeecccCCCcEEEEEecCCe-----EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 467 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 467 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
++-.. .+...........+ +|.+.+.|+.||. +..||..+.+-...-......-..-...-+|...++|
T Consensus 359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G 434 (571)
T KOG4441|consen 359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG 434 (571)
T ss_pred CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence 66332 22212222222222 5678888998875 6677766544333222222222222233467777777
Q ss_pred eeCCCCC--eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-----EEEEECCCCeEEEEEcCCC
Q 001403 540 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 540 ~~~~~~~--~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~ 612 (1084)
|.++..+ ..+..||..+++....-.-.. ...... ++ .-++...++||.|+. |..||..+.+....-....
T Consensus 435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 7554432 578899998876543322221 001222 22 235667777877663 7788988877665532222
Q ss_pred CCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPES 646 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~ 646 (1084)
....+.. ..-++...++|+.|| +|..||..+.
T Consensus 512 ~rs~~g~--~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 512 PRSAVGV--VVLGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred ccccccE--EEECCEEEEEecccCccccceeEEcCCCCC
Confidence 2111111 222577778887765 4666666655
No 395
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.54 E-value=0.041 Score=59.88 Aligned_cols=145 Identities=8% Similarity=0.086 Sum_probs=102.3
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCE-------EEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI-------LVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~-------l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
+|.++.....++--|++.|+.+.++.-|.+ |+-+.+.|+.+. -+.|=.|..|.-||..-..... +....
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q 423 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ 423 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence 444555566789999999999999987776 888888887532 2235567889999987432211 11112
Q ss_pred CCccC-CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 923 GVMTL-APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 923 ~~~~~-~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
++.-. .....|.+-..+|..++.+.+|.|++||- .+....+.+++-..+|..|..+.||++|+..+ +..+.+-++.
T Consensus 424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 22110 12355666667777666689999999997 67777777888899999999999999988654 6677776654
No 396
>PHA02713 hypothetical protein; Provisional
Probab=96.50 E-value=0.13 Score=60.67 Aligned_cols=201 Identities=7% Similarity=-0.037 Sum_probs=100.5
Q ss_pred CCCcEEEEEEeCC------CcEEEEECCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCC
Q 001403 444 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS 510 (1084)
Q Consensus 444 d~~~l~l~s~~~d------~~i~vwd~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~ 510 (1084)
++. +.+.||.+ ..+..||..+..-. ..+.........+.+ ++.+.+.|+.++ .+..||..+
T Consensus 303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~ 376 (557)
T PHA02713 303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD 376 (557)
T ss_pred CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence 455 56666643 34778888776432 111111111122222 456777777654 477888775
Q ss_pred CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC-------------------CeeEEEecCCCceEeeeeeccccccC
Q 001403 511 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 511 ~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-------------------~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
..=...-..+.......+..-+|+..+.||.++.. ...+..||..+.+-...-.-.. .
T Consensus 377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 43222111111111111122366766666643210 2458889988765532222111 1
Q ss_pred ceEEEEEcCCCCEEEEEECC------CcEEEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC--eEEEEE
Q 001403 572 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE 642 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--~i~iwd 642 (1084)
........-+++..+.|+.+ ..+..||..+ .+................+++ +++..++|+.++ .+..||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd 531 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DNTIMMLHCYESYMLQDTFN 531 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CCEEEEEeeecceeehhhcC
Confidence 11111122345666667654 2467899887 555443333222212222222 688899998887 777888
Q ss_pred cCCCCeeeecccc
Q 001403 643 TPESNSVDAAGVL 655 (1084)
Q Consensus 643 ~~~~~~~~~~~~~ 655 (1084)
..+.+-......|
T Consensus 532 ~~~~~W~~~~~~~ 544 (557)
T PHA02713 532 VYTYEWNHICHQH 544 (557)
T ss_pred cccccccchhhhc
Confidence 8777554433333
No 397
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.46 E-value=0.012 Score=65.20 Aligned_cols=92 Identities=15% Similarity=0.282 Sum_probs=77.0
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeE-EEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT-SLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~-~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
...+.-+.|+|.-..+|.+. +|.+.+..+. .+.+.++.-|...++ +++|.| ||++||+|-.||+|++.|+.++..+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~-DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRP-DGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecC-CCCEEEEEecCCeEEEEEccCCCce
Confidence 44677889999999999997 6889999988 888889887777777 999999 8999999999999999999998776
Q ss_pred eee-cccccCEEEEEEc
Q 001403 872 SKL-EGHSKRVTGLVFS 887 (1084)
Q Consensus 872 ~~l-~~h~~~V~~l~~s 887 (1084)
... ..-...|.++.|+
T Consensus 98 ~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSVETDISKGIWD 114 (665)
T ss_pred eccccccccchheeecc
Confidence 552 2244567777776
No 398
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.42 E-value=0.44 Score=51.84 Aligned_cols=237 Identities=11% Similarity=0.084 Sum_probs=109.5
Q ss_pred CCCeEEEee-cCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--
Q 001403 737 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-- 813 (1084)
Q Consensus 737 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-- 813 (1084)
+.++|++.+ ..+.|.|.|+..... .+++..+.....+... ..-.....+-.-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr----------~P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd 150 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPR----------KPRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGD 150 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TT----------S-EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCC----------CCceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccC
Confidence 456677766 468899988764432 1222221111111110 0111222344567898888762
Q ss_pred -----CCeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEe--------------------CCCeEEEEEc
Q 001403 814 -----GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------------DDSTILIYNA 865 (1084)
Q Consensus 814 -----dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~--------------------~dg~i~iwd~ 865 (1084)
.|.+.+.|-++.+......... ..-..+-+.| ..+.+++.. ...++.+||+
T Consensus 151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~ 229 (461)
T PF05694_consen 151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW 229 (461)
T ss_dssp TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence 1568999999888887765432 2345667777 666666643 2358999999
Q ss_pred CCceeeeeecccc--cCEEEEEEcCC--CCEEEEE-eCCCcEE-EEeCCCCceeeeeeeecCCCC-------------cc
Q 001403 866 RSSEVISKLEGHS--KRVTGLVFSDA--LNILVSS-GGDAQIF-VWDVDGWGIQTCRSLQTPDGV-------------MT 926 (1084)
Q Consensus 866 ~~~~~~~~l~~h~--~~V~~l~~spd--~~~l~s~-s~dg~I~-iwd~~~~~~~~~~~~~~~~~~-------------~~ 926 (1084)
.+.+.++++.--. ..+..+.|.+| ..+=.++ .-..+|. +|.-+.++-...+++...... ..
T Consensus 230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~ 309 (461)
T PF05694_consen 230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA 309 (461)
T ss_dssp TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence 9999998886322 23556777654 3433332 2333444 344355554444454443221 01
Q ss_pred CCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce---eeEeecC-------C--------CCCEEEEEEccCCCEEE
Q 001403 927 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC---LKQWFPI-------S--------SVPISQATFSCDCRMVF 986 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~---~~~~~~~-------h--------~~~v~~l~fs~dg~~l~ 986 (1084)
...-|+.+..|.|.++|.++ ..|.|+.||+..... ..+...+ | .+...-+..|-||+.|.
T Consensus 310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY 389 (461)
T PF05694_consen 310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY 389 (461)
T ss_dssp E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence 12358999999999999996 789999999986443 2222211 0 22346788999999988
Q ss_pred EEe
Q 001403 987 TSF 989 (1084)
Q Consensus 987 t~~ 989 (1084)
..+
T Consensus 390 vTn 392 (461)
T PF05694_consen 390 VTN 392 (461)
T ss_dssp EE-
T ss_pred EEe
Confidence 764
No 399
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.38 E-value=0.041 Score=65.08 Aligned_cols=104 Identities=18% Similarity=0.210 Sum_probs=78.8
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
-+..++.|++.|.|...|+.+. +++...-..-.++|++++|+.||+ +++.|-.+|.|.+||+.+++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 3567899999999999888764 222222223457999999999999 788898999999999999999999988888
Q ss_pred cEEEEeecc-cCCCcEEEEEecCCeEEEEEC
Q 001403 479 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 479 ~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
+..++-+.. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 877765432 234456888877776 4543
No 400
>PHA02713 hypothetical protein; Provisional
Probab=96.38 E-value=0.19 Score=59.28 Aligned_cols=196 Identities=9% Similarity=-0.018 Sum_probs=103.8
Q ss_pred CCcEEEEEeCC------CeEEEEEcCCce--eeeeecccccCEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCcee
Q 001403 847 DNNVIAIGMDD------STILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ 913 (1084)
Q Consensus 847 d~~~la~g~~d------g~i~iwd~~~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~ 913 (1084)
++.+.++|+.+ ..+..||..+.+ .+..+.........+ .-+|++.+.||.++ ++..||..+.+-.
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~--~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA--VIDDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE--EECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 56788888754 357888887653 222222111122222 23678888888764 4788998875432
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-C-----------------------CeEEEEEcCCcceeeEeecCC
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-E-----------------------THLAIYEAEELTCLKQWFPIS 969 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-d-----------------------~~i~vwd~~~~~~~~~~~~~h 969 (1084)
....+..... .... ..-+|++.++|+ + ..+..||..+.+-...... .
T Consensus 381 ~~~~mp~~r~------~~~~--~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~ 451 (557)
T PHA02713 381 MLPDMPIALS------SYGM--CVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-W 451 (557)
T ss_pred ECCCCCcccc------cccE--EEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-C
Confidence 2222111111 1111 233677666652 2 2477788876543221111 1
Q ss_pred CCCEEEEEEccCCCEEEEEeCC------CcEEEEEcCC-CceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEe
Q 001403 970 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGL 1042 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~ 1042 (1084)
......-+..-+|+..+.|+.+ ..+..||..+ .+....- .++.. .....++.. +|...++|+
T Consensus 452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~----~m~~~-----r~~~~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT----TTESR-----LSALHTILH--DNTIMMLHC 520 (557)
T ss_pred cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc----ccCcc-----cccceeEEE--CCEEEEEee
Confidence 1122222234467777777654 2467888887 5554211 11111 111222333 478999999
Q ss_pred CCC--cEEEEcCCCCCCCcccCCCCC
Q 001403 1043 TNG--EVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1043 ~dg--~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
.|| .+..+|+ ...+|....|.-
T Consensus 521 ~~~~~~~e~yd~--~~~~W~~~~~~~ 544 (557)
T PHA02713 521 YESYMLQDTFNV--YTYEWNHICHQH 544 (557)
T ss_pred ecceeehhhcCc--ccccccchhhhc
Confidence 999 6777777 445588776654
No 401
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.31 E-value=0.095 Score=62.37 Aligned_cols=145 Identities=12% Similarity=0.115 Sum_probs=97.7
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCc-EEEEeeccc---CCCcEEEEEecCCeEEEEECCCCCceEee-c--
Q 001403 446 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGARVDY-D-- 518 (1084)
Q Consensus 446 ~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~-v~~~~~~~~---~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~-- 518 (1084)
+.++|........+.-.|+++|+.+..+..|... |..++-... -+..-.+.|-.+..+..||.+........ .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k 572 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSK 572 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeecccc
Confidence 3434555556788999999999999999888754 666653210 01234567777888999999875432211 1
Q ss_pred --CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 519 --APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 519 --~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
.......|++-+.+|. ||+|+. +|.|++||-...+....+++.. .+|..+..+.||+++++.+. ..+.+
T Consensus 573 ~Y~~~~~Fs~~aTt~~G~-iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLlL 643 (794)
T PF08553_consen 573 QYSSKNNFSCFATTEDGY-IAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLLL 643 (794)
T ss_pred ccccCCCceEEEecCCce-EEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEEE
Confidence 2334677888777775 555554 5559999955444444555555 89999999999999988764 55666
Q ss_pred EEC
Q 001403 597 WDM 599 (1084)
Q Consensus 597 wd~ 599 (1084)
++.
T Consensus 644 i~t 646 (794)
T PF08553_consen 644 IDT 646 (794)
T ss_pred EEE
Confidence 664
No 402
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.30 E-value=1.9 Score=45.75 Aligned_cols=277 Identities=9% Similarity=0.066 Sum_probs=123.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC---CCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP---GVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h---~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
.+..|+|..+..-.|+|.. + .|+....+...-+....... .-...+|.|..+ ..+++ +..+ +
T Consensus 18 ~l~dV~F~d~~~G~~VG~~----------g--~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ 82 (302)
T PF14870_consen 18 PLLDVAFVDPNHGWAVGAY----------G--TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-L 82 (302)
T ss_dssp -EEEEEESSSS-EEEEETT----------T--EEEEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-E
T ss_pred ceEEEEEecCCEEEEEecC----------C--EEEEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-e
Confidence 7888999977777777632 2 34444444333222111111 124667778653 34444 4455 5
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~~~~~~ 491 (1084)
.+.-.+.|+.-..+..-..-.+....+....++. .++. +..|.|..= .+.|+. ......-.+.+..+.. .+||
T Consensus 83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~--~~l~-~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r--~~dG 156 (302)
T PF14870_consen 83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGS--AELA-GDRGAIYRT-TDGGKTWQAVVSETSGSINDITR--SSDG 156 (302)
T ss_dssp EEEESSTTSS-EE----TT-SS-EEEEEEEETTE--EEEE-ETT--EEEE-SSTTSSEEEEE-S----EEEEEE---TTS
T ss_pred EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCc--EEEE-cCCCcEEEe-CCCCCCeeEcccCCcceeEeEEE--CCCC
Confidence 5556666655443211011222333444444443 3333 334543332 233332 2223334456666655 5677
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec-CCCceEeee-eeccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN-ESEGAIKRT-YQGLQLQ 569 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd-~~~~~~~~~-~~~~~~~ 569 (1084)
.++++++.-..+.-||.-...-..........+.+|.|+|++...+.+. .+.|+.=+ ....+.-.. +......
T Consensus 157 ~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~-----Gg~~~~s~~~~~~~~w~~~~~~~~~~ 231 (302)
T PF14870_consen 157 RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLAR-----GGQIQFSDDPDDGETWSEPIIPIKTN 231 (302)
T ss_dssp -EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEET-----TTEEEEEE-TTEEEEE---B-TTSS-
T ss_pred cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeC-----CcEEEEccCCCCccccccccCCcccC
Confidence 7777776666667776443222333334557899999999988866552 33466555 222222111 1111112
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
...+..++|.+++...++|+ .|.+ +...+.|+.-+..... .-....+.+.|.++.+-++. +.+|.|.-|
T Consensus 232 ~~~~ld~a~~~~~~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G~~G~ll~~ 301 (302)
T PF14870_consen 232 GYGILDLAYRPPNEIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-GQDGVLLRY 301 (302)
T ss_dssp -S-EEEEEESSSS-EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred ceeeEEEEecCCCCEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEE-CCCcEEEEe
Confidence 24578899998876666554 5544 3455566655554432 22234778888876555555 466776554
No 403
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=96.29 E-value=0.012 Score=39.99 Aligned_cols=39 Identities=31% Similarity=0.443 Sum_probs=33.4
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
++....+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 345566777888999999999 778999999999999996
No 404
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.25 E-value=0.21 Score=43.23 Aligned_cols=101 Identities=16% Similarity=0.158 Sum_probs=65.9
Q ss_pred EEEEEEcC---CC-CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 881 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 881 V~~l~~sp---d~-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
|++|++.. || +.|+.||.|..|++|+=+. .+...... ..|++++-...+++...-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence 67777764 22 6799999999999998775 22222222 2588888888877666668999999975
Q ss_pred CCcceeeEeecCCCCCEEEEEEcc---CC-CEEEEEeCCCcEEE
Q 001403 957 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLSI 996 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~i~v 996 (1084)
. ..+..... ...+.++++.. || .-|++|-.+|.|-+
T Consensus 71 ~--~RlWRiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 S--QRLWRIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred c--ceeeeecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 2 33333222 33466666543 33 35888888887753
No 405
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.18 E-value=0.34 Score=41.93 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=65.9
Q ss_pred eEEEEEcC-CC---CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 391 VNRVVWSP-DG---SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 391 V~~v~fsp-dg---~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
|+++++.. || +.|++|+.|..|+||+-+. .+. ++. -.+.|++++-...++ ++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~~~---Ei~-e~~~v~~L~~~~~~~---F~Y~l~NGTVGvY~~-- 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--IVA---EIT-ETDKVTSLCSLGGGR---FAYALANGTVGVYDR-- 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--EEE---EEe-cccceEEEEEcCCCE---EEEEecCCEEEEEeC--
Confidence 56666655 33 5899999999999998553 222 333 345688888777754 788888999999973
Q ss_pred CceeeEeccCCCcEEEEe-ecccCCC-cEEEEEecCCeEE
Q 001403 467 GSRTYSFEGHGAPVYSLC-PHAKENI-HFIFSISVDGKIK 504 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~-~~~~~~~-~~l~s~s~dg~i~ 504 (1084)
...+...+.-.. +.+++ +..+.|| .-|++|=.+|.|-
T Consensus 71 ~~RlWRiKSK~~-~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 71 SQRLWRIKSKNQ-VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred cceeeeeccCCC-eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 333444443333 44554 4334333 3577887777764
No 406
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=96.18 E-value=2.1 Score=47.72 Aligned_cols=285 Identities=11% Similarity=0.089 Sum_probs=149.0
Q ss_pred CCEEEEEECCCcEEEEECCCCe-----EEEEEcCCCCCCCcceEEEe---c--CCCEEEEEECCCeEEEEEcCCC--C--
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N-- 647 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~~~~l~~~~~dg~i~iwd~~~~--~-- 647 (1084)
...+++|+..|.++||+...+. .+-..+.. .+|..+... + +...||+- .-..+.+|.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaVL-hP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAVL-HPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEEe-cCCEEEEEEEEecCCCcc
Confidence 4689999999999999986533 22222222 234444433 2 33355553 4567888877321 1
Q ss_pred -----eeeeccccccc--eeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 648 -----SVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 648 -----~~~~~~~~~~~--i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.+..+..|.-. ...+...|.+. ......+..-+.||.+.+++-+... ....+
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l 171 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL 171 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence 11111112111 11111111111 1225667788899999999865321 12222
Q ss_pred CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCccc----------ceecCCeeecCCCCCccccccCcC
Q 001403 721 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 721 ~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
+.. --...+.|.+....+++++++..+..|++..-.....+.. ....-..-|...-|+...
T Consensus 172 p~~---llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------ 242 (418)
T PF14727_consen 172 PDF---LLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------ 242 (418)
T ss_pred CCC---CCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence 221 1223568888889999999999999998753211111110 111122335544444222
Q ss_pred CCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEE------cCCCCcEEEEEeCCCeEEEEE
Q 001403 791 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~------s~~d~~~la~g~~dg~i~iwd 864 (1084)
.+..+.++.....+++-+..++.+.+. +|......+-...+.....| .+..+..+++++.++++.||.
T Consensus 243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~-~G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~ 316 (418)
T PF14727_consen 243 -----DIQVVRFSSSESDIVVLGERSLFCLKD-NGSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE 316 (418)
T ss_pred -----EEEEEEcCCCCceEEEEecceEEEEcC-CCeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence 233344444555666666777777765 34443332221112211111 121123588899999999995
Q ss_pred cCCceeeeeecccccCEEEEEE---cCCCCEEEEEeCCCcEEEEeCCC
Q 001403 865 ARSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 865 ~~~~~~~~~l~~h~~~V~~l~~---spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
..+++...+....+| ++.. ..-...|++-+.+|.+.+-=+.+
T Consensus 317 --d~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT 361 (418)
T PF14727_consen 317 --DTTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT 361 (418)
T ss_pred --CCeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence 345555444333333 3333 23356788888999998877766
No 407
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=96.09 E-value=0.24 Score=48.24 Aligned_cols=156 Identities=12% Similarity=0.081 Sum_probs=91.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~i 414 (1084)
....-..+|+|+|.+-...|....-....+.++.|-..-...... +.-.--..++|+.|.+.+... +.+-+|.-
T Consensus 110 R~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~-----~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 110 RLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIW-----NCVGISNGLAWDSDAKKFYYIDSLNYEVDA 184 (310)
T ss_pred ccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeee-----hhccCCccccccccCcEEEEEccCceEEee
Confidence 334445789999966544442111111235666665543222211 112233468899888877766 45667877
Q ss_pred EE--ccCCccccce--eeeec-----ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 415 YA--YHGGSDARQQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 415 wd--~~~~~~~~~~--~~l~~-----h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|| ..+|....+. ..++. |. .--.++...+|. +.+++-..++|...|..+|+.+.++.-....|+++||
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~-~PDGm~ID~eG~--L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF 261 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESL-EPDGMTIDTEGN--LYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF 261 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCC-CCCcceEccCCc--EEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence 88 5666543221 11111 11 112344555676 6677777889999999999999999988999999999
Q ss_pred cccCCCcEEEEEec
Q 001403 486 HAKENIHFIFSISV 499 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~ 499 (1084)
-..+-.-+.+|+..
T Consensus 262 gGkn~d~~yvT~aa 275 (310)
T KOG4499|consen 262 GGKNLDILYVTTAA 275 (310)
T ss_pred cCCCccEEEEEehh
Confidence 54322234444443
No 408
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.00 E-value=1.6 Score=44.72 Aligned_cols=204 Identities=16% Similarity=0.228 Sum_probs=123.4
Q ss_pred cccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 724 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 724 ~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
+....+.+++|+|+.+.|++........|+= ...|..+....+.+ -.....+++.
T Consensus 83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi 137 (316)
T COG3204 83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI 137 (316)
T ss_pred cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence 3445599999999999999998876655542 23344455555544 3445667888
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCceeEEE-------Ec---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce---
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--- 869 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~~~~-------~~---~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~--- 869 (1084)
.+|+++++-. +..+.++.+........ +. ......-.+||+| .++.|..+-+-.-+.||....+.
T Consensus 138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l 216 (316)
T COG3204 138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL 216 (316)
T ss_pred cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence 8888777665 67788777765432221 11 1134567899999 56666667777767777665322
Q ss_pred eeeeeccc-------ccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC
Q 001403 870 VISKLEGH-------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 941 (1084)
Q Consensus 870 ~~~~l~~h-------~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 941 (1084)
.+.....+ -..|.++.|.+ .+.+|+-+.+++.+.-.|....-...........|-...-.....++..++|.
T Consensus 217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~ 296 (316)
T COG3204 217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN 296 (316)
T ss_pred ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence 11111122 23466778875 56777777788888888877643222222233333322223456778888887
Q ss_pred EEEEEeCCeEEE
Q 001403 942 RFLLVHETHLAI 953 (1084)
Q Consensus 942 ~la~~~d~~i~v 953 (1084)
+-+++..+-.+.
T Consensus 297 lYIvSEPnlfy~ 308 (316)
T COG3204 297 LYIVSEPNLFYR 308 (316)
T ss_pred EEEEecCCccee
Confidence 766665544433
No 409
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.95 E-value=0.58 Score=52.34 Aligned_cols=161 Identities=14% Similarity=0.111 Sum_probs=91.8
Q ss_pred CCeEEEEEcCCCCcEEEEEe--CCCeEEEEEcCCceeeeeecccccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCC
Q 001403 836 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~--~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~ 909 (1084)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+..|+ .|.+++|+|- -..|...-.-..|.||-+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 3577888885 445555443 334443322 23344443 4889999984 33444455678899999873
Q ss_pred Cceeeeeee--ecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 910 WGIQTCRSL--QTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 910 ~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
......+.+ ++.+-.....--...+.|+|....|++ .....=.++++.........-....+.|.|.||..||+.|+
T Consensus 92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV 171 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV 171 (671)
T ss_pred CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence 222222111 111111111112357889999999998 44444445565533322221223478999999999999887
Q ss_pred EEeC-CCcEEEEEcCCCce
Q 001403 987 TSFV-DGTLSIHEASNLEV 1004 (1084)
Q Consensus 987 t~~~-dg~i~vwd~~~~~~ 1004 (1084)
++-. .=.-++||-....+
T Consensus 172 VAvGSsLHSyiWd~~qKtL 190 (671)
T PF15390_consen 172 VAVGSSLHSYIWDSAQKTL 190 (671)
T ss_pred EEeCCeEEEEEecCchhhh
Confidence 6643 33467898665543
No 410
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=1.7 Score=44.52 Aligned_cols=193 Identities=13% Similarity=0.177 Sum_probs=113.3
Q ss_pred eecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEE
Q 001403 429 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWL 507 (1084)
Q Consensus 429 l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd 507 (1084)
+.+-...|.++.|+|+.+ .|++......-.||=-..|..+.++.-. -.....+.+ -++++++++--.++.+.++.
T Consensus 81 i~g~~~nvS~LTynp~~r--tLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey--ig~n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTR--TLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY--IGGNQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcc--eEEEecCCCceEEEEecCCceEEEecccccCChhHeEE--ecCCEEEEEehhcceEEEEE
Confidence 345556699999999999 5666666667777766889998877421 112233444 34667888888888888887
Q ss_pred CCCCCceEee----------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eeeeecccc----ccCc
Q 001403 508 YDSLGARVDY----------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQL----QHNS 572 (1084)
Q Consensus 508 ~~~~~~~~~~----------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~~~~~~~----~~~~ 572 (1084)
++........ ...+.....++|.|....+..+-.-. -..|+.|+...... ......+.. .-..
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~--P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~D 234 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERN--PIGIFEVTQSPSSLSVHASLDPTADRDLFVLD 234 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccC--CcEEEEEecCCcccccccccCcccccceEeec
Confidence 7765433221 11245788999999999988875421 22344444221111 111111110 0145
Q ss_pred eEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEcCCCC-------CCCcceEEEecCCCE
Q 001403 573 VSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL 628 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~~~~ 628 (1084)
+.++.|++..+.+++ +.+++.+.-.|.. |..+..+....+ .+....++..++|.+
T Consensus 235 vSgl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l 297 (316)
T COG3204 235 VSGLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL 297 (316)
T ss_pred cccceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCE
Confidence 778888876655555 5577777777765 444544433322 122335566655543
No 411
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=95.81 E-value=1.2 Score=48.70 Aligned_cols=235 Identities=11% Similarity=0.038 Sum_probs=105.1
Q ss_pred CCcEEEEEe-cCCeEEEEECCCCCc----eEeecC---C----CCeEEEEEEcCCCCEEEEEeeC--CCCCeeEEEecCC
Q 001403 490 NIHFIFSIS-VDGKIKAWLYDSLGA----RVDYDA---P----GLGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNES 555 (1084)
Q Consensus 490 ~~~~l~s~s-~dg~i~iwd~~~~~~----~~~~~~---~----~~~i~~~~~s~d~~~l~~~~~~--~~~~~~i~~wd~~ 555 (1084)
+.++|+..+ ..++|.+.|+.+... ...++. . -.....+..-|+|+.++++-.+ +++.+-+.+.|-+
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~ 165 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE 165 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence 345666666 667899999874322 222221 0 0123345556899988876543 4556678999998
Q ss_pred CceEeeeeeccccccCceEEEEEcCCCCEEEEEE--------------------CCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+.+.............--..+.+.|..+.+++.. ...++.+||+.+.+.++++.......
T Consensus 166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~ 245 (461)
T PF05694_consen 166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ 245 (461)
T ss_dssp T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence 8888877765441123345677888888888864 23579999999999999998764322
Q ss_pred CcceEEEec--CCCEEEEEE-CCCeEEEEEc-CCCCe----eeecccc-----------------ccceeEEEEcCCCce
Q 001403 616 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNS----VDAAGVL-----------------SDNLRKLSVNPISTV 670 (1084)
Q Consensus 616 ~v~~v~~s~--~~~~l~~~~-~dg~i~iwd~-~~~~~----~~~~~~~-----------------~~~i~~~~~~p~~~~ 670 (1084)
....+.|.. +..+-+++. -..+|..|-- ..++- +-.+... ..-++.+.++
T Consensus 246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS----- 320 (461)
T PF05694_consen 246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS----- 320 (461)
T ss_dssp EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE------
T ss_pred ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEc-----
Confidence 244566654 444433332 2344544433 33311 1111100 1123333333
Q ss_pred eeeeccCceeEecCCCCCCCCc-cceecccCccccccceeecCcc-ceeeccCC------------ccccceEEEEEEec
Q 001403 671 TGAGIANGSVSVNEDPKEDVKP-EISVEAENKSEVEKPLFARPSE-CQSLLLPS------------KVKANKISRLTYNN 736 (1084)
Q Consensus 671 ~~~~~~~~~~~~~~~~s~~~~~-l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~------------~~~~~~i~~l~~s~ 736 (1084)
.|.++ .+++-.+|.++.||+.-..... .-.+.+-. ..-.+...-+..|-
T Consensus 321 -----------------lDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~ 383 (461)
T PF05694_consen 321 -----------------LDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSL 383 (461)
T ss_dssp -----------------TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-T
T ss_pred -----------------cCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEcc
Confidence 44444 4566778899999976432221 11111111 11123346788899
Q ss_pred CCCeEEEeec
Q 001403 737 GGQAIFALAS 746 (1084)
Q Consensus 737 ~g~~l~~~~~ 746 (1084)
||++|..+.+
T Consensus 384 DGkRlYvTnS 393 (461)
T PF05694_consen 384 DGKRLYVTNS 393 (461)
T ss_dssp TSSEEEEE--
T ss_pred CCeEEEEEee
Confidence 9998887765
No 412
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=95.69 E-value=0.92 Score=44.45 Aligned_cols=202 Identities=13% Similarity=0.108 Sum_probs=103.7
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC---CEEEEEeCCCEEEEEEcc--CCccccceeeeec--ccccEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG---SLLGVAYSKHIVQLYAYH--GGSDARQQLEIDA--HVGNVN 437 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg---~~las~~~dg~v~iwd~~--~~~~~~~~~~l~~--h~~~V~ 437 (1084)
+.|.=||..+...... ...+. .+..+.|--.| .+.+.++..-.|.-||-. .....+.+.++.. ...+.+
T Consensus 37 g~v~r~D~~qn~v~ra--~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~kknR~N 112 (310)
T KOG4499|consen 37 GEVHRYDIEQNKVYRA--KIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDRKKNRLN 112 (310)
T ss_pred CceehhhhhhhheEEE--EEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchHHhcccc
Confidence 4455588876432221 12332 23344443333 233334444445667732 2222222111211 133566
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC--------CcEEEEeecccCCCcEEEEEecCCeEEEEECC
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIKAWLYD 509 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~--------~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~ 509 (1084)
.-..+|+|+ +.+-.-.|-.- +.....|....-+.+|. +--+.++|..+ .-.+.++-+.+-.|.-||.+
T Consensus 113 DgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V~a~dyd 188 (310)
T KOG4499|consen 113 DGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEVDAYDYD 188 (310)
T ss_pred cCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEEeeeecC
Confidence 667889999 43322122111 12212232222223332 22345667522 22455666777788888854
Q ss_pred C--CC-----ceEeecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE
Q 001403 510 S--LG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF 578 (1084)
Q Consensus 510 ~--~~-----~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~ 578 (1084)
- +. .++.++. .......+++..+|.+.+++-. .++|...|+.+|+.+..+.-.. ..+++++|
T Consensus 189 ~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qitsccF 261 (310)
T KOG4499|consen 189 CPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQITSCCF 261 (310)
T ss_pred CCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---CceEEEEe
Confidence 2 22 2222222 1112335666778888777765 5679999999999999998877 88999999
Q ss_pred cCC
Q 001403 579 DTA 581 (1084)
Q Consensus 579 s~~ 581 (1084)
.-.
T Consensus 262 gGk 264 (310)
T KOG4499|consen 262 GGK 264 (310)
T ss_pred cCC
Confidence 643
No 413
>PRK13684 Ycf48-like protein; Provisional
Probab=95.68 E-value=4.3 Score=44.52 Aligned_cols=157 Identities=11% Similarity=0.027 Sum_probs=87.0
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcC
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 957 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~ 957 (1084)
.+.+.++.+.|++.+++++ ..|.+.. ..+.+. .....+.... ...+..+.+.++++.++++..|.+.+=...
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~-s~~~gg-~tW~~~~~~~-----~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d 243 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYS-TWEPGQ-TAWTPHQRNS-----SRRLQSMGFQPDGNLWMLARGGQIRFNDPD 243 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEE-EcCCCC-CeEEEeeCCC-----cccceeeeEcCCCCEEEEecCCEEEEccCC
Confidence 4568899999998766554 5564432 211111 0111122111 126889999999999888888876543344
Q ss_pred CcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 958 ELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 958 ~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
.|+.-.....+ ....+.++.|.+++..++ ++.+|.|. ...+.|+--.........+ ...+ .+.|..
T Consensus 244 ~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~~~~~~~~~~-----~~~~--~~~~~~-- 312 (334)
T PRK13684 244 DLESWSKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWEKDPVGEEVP-----SNFY--KIVFLD-- 312 (334)
T ss_pred CCCccccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCeECCcCCCCC-----cceE--EEEEeC--
Confidence 44432221111 134578899999887655 45677665 4455544322211001111 1123 344553
Q ss_pred CCEEEEEeCCCcEEEEcCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~ 1053 (1084)
++...+++..|.|..|+-.
T Consensus 313 ~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 313 PEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred CCceEEECCCceEEEecCC
Confidence 3566667789999888753
No 414
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.67 E-value=0.2 Score=54.83 Aligned_cols=144 Identities=10% Similarity=0.096 Sum_probs=95.3
Q ss_pred CcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-----EEEecCCeEEEEECCCCCc-eEee-c
Q 001403 446 KQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-----FSISVDGKIKAWLYDSLGA-RVDY-D 518 (1084)
Q Consensus 446 ~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-----~s~s~dg~i~iwd~~~~~~-~~~~-~ 518 (1084)
..+++.++.....++--|+++|+.+.++.-|.. |.-+.+.+...+..+ +.|-.|..|.-||.+-... .... .
T Consensus 345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q 423 (644)
T KOG2395|consen 345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQ 423 (644)
T ss_pred cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeee
Confidence 334667777777899999999999999988777 555555444433332 3456678888899875443 2111 1
Q ss_pred C----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcE
Q 001403 519 A----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI 594 (1084)
Q Consensus 519 ~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i 594 (1084)
. ......|.+-..+| ++++++. +|-|++||.-..+....+++.. .+|..+..+.+|++|++.+. ..+
T Consensus 424 ~kqy~~k~nFsc~aTT~sG-~IvvgS~----~GdIRLYdri~~~AKTAlPgLG---~~I~hVdvtadGKwil~Tc~-tyL 494 (644)
T KOG2395|consen 424 SKQYSTKNNFSCFATTESG-YIVVGSL----KGDIRLYDRIGRRAKTALPGLG---DAIKHVDVTADGKWILATCK-TYL 494 (644)
T ss_pred ccccccccccceeeecCCc-eEEEeec----CCcEEeehhhhhhhhhcccccC---CceeeEEeeccCcEEEEecc-cEE
Confidence 1 12245566655555 5666665 4449999974444455566666 89999999999999887764 455
Q ss_pred EEEEC
Q 001403 595 KIWDM 599 (1084)
Q Consensus 595 ~iwd~ 599 (1084)
.+.++
T Consensus 495 lLi~t 499 (644)
T KOG2395|consen 495 LLIDT 499 (644)
T ss_pred EEEEE
Confidence 55554
No 415
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=95.54 E-value=3.6 Score=50.03 Aligned_cols=204 Identities=13% Similarity=0.104 Sum_probs=119.6
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCC--------eEEEEEcC---------------CCCcEEEEEeCCCeEE
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL 861 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~la~g~~dg~i~ 861 (1084)
++..+++..++.|.-.|..+|+.+.++...... ...+++-. .++..|+.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788999999999988877643211 11222211 0234778899999999
Q ss_pred EEEcCCceeeeeecccccCEE-------------EEEEcC--CCCEEEEEeC----------CCcEEEEeCCCCceeeee
Q 001403 862 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 862 iwd~~~~~~~~~l~~h~~~V~-------------~l~~sp--d~~~l~s~s~----------dg~I~iwd~~~~~~~~~~ 916 (1084)
-.|.++|+.+..+.. .+.|. .+.-+| .+..++.++. +|.|+-+|+.+|+..-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876642 22111 011111 1345555543 688999999998865432
Q ss_pred eeecCC-------CCcc--CCCCc-eEEEEccCCCEEEEE-------------------eCCeEEEEEcCCcceeeEeec
Q 001403 917 SLQTPD-------GVMT--LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP 967 (1084)
Q Consensus 917 ~~~~~~-------~~~~--~~~~v-~~~~~s~dg~~la~~-------------------~d~~i~vwd~~~~~~~~~~~~ 967 (1084)
-..... +..- ....+ ..+++.++..++..+ ..+.|.-.|.+||+....+..
T Consensus 353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~ 432 (764)
T TIGR03074 353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT 432 (764)
T ss_pred ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence 211110 0000 00111 344555655554441 124577788899998877655
Q ss_pred CCC--------CCEEEEEEcc-CCC---EEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 968 ISS--------VPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 968 ~h~--------~~v~~l~fs~-dg~---~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
.|. ....=+.+.. +|+ .++.++.+|.+.+.|-.+|+.+....
T Consensus 433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 331 1111122333 664 79999999999999999999887643
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.53 E-value=3.4 Score=42.44 Aligned_cols=195 Identities=12% Similarity=0.072 Sum_probs=112.6
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
..-...+.|..+|..+-+++.-|.=. ++.+|+.+|+......++. ..--..++...|
T Consensus 44 ~aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~~---~~FgEGit~~~d 100 (264)
T PF05096_consen 44 TAFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLPP---RYFGEGITILGD 100 (264)
T ss_dssp T-EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-TT---T--EEEEEEETT
T ss_pred cccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECCc---cccceeEEEECC
Confidence 34566788888888777777765322 3445666666454544432 223344555555
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-----cC
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-----KR 880 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-----~~ 880 (1084)
.-+..+.-++...+||..+.+.+.++.-. +.=..++. |++.|+.......++++|..+-+....+.-.. ..
T Consensus 101 ~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~ 176 (264)
T PF05096_consen 101 KLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSN 176 (264)
T ss_dssp EEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---
T ss_pred EEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCC
Confidence 55555666899999999999999888643 45566663 56667777777789999988876665554321 23
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC-------CCccCCCCceEEEEccCCCEEEEEeC
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLVHE 948 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~~d 948 (1084)
++-|.+- +|...|-.=....|..-|..+|+.....-+..+. .......-...+|+.|....|.+...
T Consensus 177 LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 177 LNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred cEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 4556665 6666665555556777788887755432221111 11111234689999988877766433
No 417
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.49 E-value=0.24 Score=59.22 Aligned_cols=248 Identities=9% Similarity=0.041 Sum_probs=141.5
Q ss_pred CCCccEEEecCCCCEEEEEe--C-CeEEEEEcCCceeEE-----EEcC------CCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001403 794 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST 859 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--d-g~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~ 859 (1084)
.-.+..+...+|+...++.. + -.|..||+.+...-. .+.. ......++.|.|.--...|+...|+.
T Consensus 100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence 44566777888877666554 3 368999987543221 1221 22345677888843445667778999
Q ss_pred EEEEEcCCce-eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 860 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 860 i~iwd~~~~~-~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
|++..+.-.. .+..+. -...+++++|+|-|+.++.|-..|++.-|...-..... +..+.... ...|.+++|-.
T Consensus 180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~---ip~Pp~~e--~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSE---IPEPPVEE--NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceeec---ccCCCcCC--CcceeEEEEec
Confidence 9988765432 222222 45668999999999999999999999988776532222 22221111 23788999988
Q ss_pred CCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCC
Q 001403 939 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1018 (1084)
Q Consensus 939 dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1018 (1084)
...++++-... ++. ...+...+++.+ .-.-||.+.+-..-.+... + ..++..+
T Consensus 254 t~eflvvy~n~--------ts~--------~~dpd~y~~~~~------k~kp~g~~nF~E~~d~tpp--f---g~~~rq~ 306 (1405)
T KOG3630|consen 254 TQEFLVVYGNV--------TSE--------TDDPDSYDQKMY------KIKPDGSANFQETFDITPP--F---GQIVRQP 306 (1405)
T ss_pred ceeEEEEeccc--------ccC--------cCCchhhhhccc------cccCcceeeeccccCCCCC--c---cccCccc
Confidence 88877762111 110 011111111111 1113444443333222221 0 0011111
Q ss_pred cccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcCCCCCCCcccCCCCCcccCCCCCCcccc
Q 001403 1019 SCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD 1079 (1084)
Q Consensus 1019 ~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1079 (1084)
|-. ...-..|.|+|.+.+++|... ..|-||.. . ..|....+.|...+..+.+.++|
T Consensus 307 h~y--~~~L~~W~~~~~~vVvvansaSsEvsila~-~--~qW~~w~~vde~ra~LP~s~k~d 363 (1405)
T KOG3630|consen 307 HMY--KVTLSGWIEPDANVVVVANSASSEVSILAS-M--KQWIEWSQVDEKRAVLPISEKTD 363 (1405)
T ss_pred hhH--HHhhhhhcccccceEEEecccccchhhhhh-h--cceeeccccccceeeecccccCC
Confidence 111 112246887677776666554 46888888 2 66888888888888888888887
No 418
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=95.34 E-value=0.065 Score=38.45 Aligned_cols=31 Identities=19% Similarity=0.379 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 418 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~ 418 (1084)
...|.+++|+|...+||.+..+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
No 419
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=95.19 E-value=0.055 Score=52.70 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=69.8
Q ss_pred CEEEEE-eCCeEEEEEcCCceeE-EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCEEE
Q 001403 807 AYLFSA-SGGVISLYIVMTFKTI-LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG 883 (1084)
Q Consensus 807 ~~l~~~-sdg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~ 883 (1084)
..+++| ++|.|.+|...-.... .........|.++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 344555 4899999987622111 11111223333333333356689999999999999999988888777787 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEeCCC
Q 001403 884 LVFSDALNILVSS--GGDAQIFVWDVDG 909 (1084)
Q Consensus 884 l~~spd~~~l~s~--s~dg~I~iwd~~~ 909 (1084)
+..+..++.++++ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666677777777 7788888888876
No 420
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=95.04 E-value=5.4 Score=44.54 Aligned_cols=139 Identities=13% Similarity=0.146 Sum_probs=79.6
Q ss_pred CCccEEEecCCCCEEEEEe------------C-CeEEEEEcCC--cee--EEEEcCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 795 EAVPCFALSKNDAYLFSAS------------G-GVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s------------d-g~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
.....|+|.++|+++++-. . +.|.+++-.+ |+. ...+...-.....+++.+ ++ +++ +...
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~-~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAV-GG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEec-CC-EEE-eCCC
Confidence 4567899999999887752 1 2677776542 332 233433344568899998 77 444 4444
Q ss_pred CeEEEEEcCCc-----e--ee-eeecc----cccCEEEEEEcCCCCEEEEEeCC-------------------CcEEEEe
Q 001403 858 STILIYNARSS-----E--VI-SKLEG----HSKRVTGLVFSDALNILVSSGGD-------------------AQIFVWD 906 (1084)
Q Consensus 858 g~i~iwd~~~~-----~--~~-~~l~~----h~~~V~~l~~spd~~~l~s~s~d-------------------g~I~iwd 906 (1084)
...++.|.... + .+ ..+.. +......++|.|||.+.++.+.. |.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 33334344321 1 11 22322 13447789999999888766521 3344555
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.++++.. .+. .+.. ....++|+++|+++++
T Consensus 171 pdg~~~e---~~a--~G~r----np~Gl~~d~~G~l~~t 200 (367)
T TIGR02604 171 PDGGKLR---VVA--HGFQ----NPYGHSVDSWGDVFFC 200 (367)
T ss_pred cCCCeEE---EEe--cCcC----CCccceECCCCCEEEE
Confidence 5543321 121 2222 3568999999999877
No 421
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=94.87 E-value=13 Score=45.20 Aligned_cols=105 Identities=13% Similarity=0.128 Sum_probs=64.5
Q ss_pred EEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc--CCCCCeEEEEEcCCCCcEEEEEeCCCeEEE--EEcCCceeeeeec
Q 001403 800 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKLE 875 (1084)
Q Consensus 800 l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~la~g~~dg~i~i--wd~~~~~~~~~l~ 875 (1084)
.|..|...++.+|-+..+++||+...+.++... .....|+.+.+ .+..+++|..--.|.+ |+-...++ ..+.
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l-~~fa 1014 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQL-IVFA 1014 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeE-EEEe
Confidence 456677778888888999999998776665433 23456777777 4557777776555555 44443343 3333
Q ss_pred c--cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 876 G--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 876 ~--h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
+ -...|+++.+- |...+|.+..=|.+.+-.+..
T Consensus 1015 dD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1015 DDPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 2 22346666554 445666666666665555543
No 422
>PRK13684 Ycf48-like protein; Provisional
Probab=94.85 E-value=7.6 Score=42.58 Aligned_cols=278 Identities=9% Similarity=0.056 Sum_probs=130.0
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
...+.+|+|..+.+-+|+|.. + .||....+....+..... .....+.++.|.++ ..+++| ..+.
T Consensus 45 ~~~l~~v~F~d~~~g~avG~~----------G--~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~G-~~g~ 110 (334)
T PRK13684 45 EANLLDIAFTDPNHGWLVGSN----------R--TLLETNDGGETWEERSLDLPEENFRLISISFKGD-EGWIVG-QPSL 110 (334)
T ss_pred CCceEEEEEeCCCcEEEEECC----------C--EEEEEcCCCCCceECccCCcccccceeeeEEcCC-cEEEeC-CCce
Confidence 447888999877777777621 2 345444433333221111 12234778888754 344443 4443
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~ 490 (1084)
| +-..+.|+.-.....-....+....+....++. ..+ ++..|.|..=+ +.|+.=..+ ..-...+..+.+.+ +
T Consensus 111 i-~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~-~g~~G~i~~S~-DgG~tW~~~~~~~~g~~~~i~~~~--~ 183 (334)
T PRK13684 111 L-LHTTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEM-ATNVGAIYRTT-DGGKNWEALVEDAAGVVRNLRRSP--D 183 (334)
T ss_pred E-EEECCCCCCCeEccCCcCCCCCceEEEEECCCc--cee-eeccceEEEEC-CCCCCceeCcCCCcceEEEEEECC--C
Confidence 2 222333433332110000111112222222232 233 33344443322 233321222 12244577777743 5
Q ss_pred CcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
+.+ +..+..|.+.. ..+.... ..........+.++.+.++++.++++. .+.+++-....|..-.....+..
T Consensus 184 g~~-v~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~~~~~~ 256 (334)
T PRK13684 184 GKY-VAVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKPIIPEI 256 (334)
T ss_pred CeE-EEEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccccCCcc
Confidence 444 45555565442 1122222 112233445788999999999877654 23343222333433222221110
Q ss_pred -ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 569 -QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 569 -~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
....+..+.+.+++.. +.++.+|.+. .....|+.-..... ..-....+.+.|..+++.+++ +..|.|.-++
T Consensus 257 ~~~~~l~~v~~~~~~~~-~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~G~il~~~ 329 (334)
T PRK13684 257 TNGYGYLDLAYRTPGEI-WAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQRGVLLRYV 329 (334)
T ss_pred ccccceeeEEEcCCCCE-EEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCCceEEEec
Confidence 1135778889887764 4555677665 34455554444332 111124667777777766655 4567777665
No 423
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=94.84 E-value=9 Score=43.40 Aligned_cols=59 Identities=12% Similarity=0.064 Sum_probs=42.8
Q ss_pred eEEEEccCCCEEEEEeC--CeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 932 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d--~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
--++|.|..+.+|++++ +.|.||.+.... .+.++....+.+-..++|-.|+.+|+..|.
T Consensus 342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVGk 404 (671)
T PF15390_consen 342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVGK 404 (671)
T ss_pred ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEecc
Confidence 35899999999999765 569999885322 233333344778889999999888776653
No 424
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.77 E-value=0.084 Score=62.59 Aligned_cols=102 Identities=13% Similarity=0.159 Sum_probs=75.8
Q ss_pred cEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc
Q 001403 492 HFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~ 570 (1084)
..++.|+..|.+-..|+... .....-.....+|++++|+.+|+.++.|-. +|.|.+||..+++..+.+..+..+.
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~ 175 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV 175 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence 46888888888888877653 222233344568999999999999998865 7779999999999999888777445
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
..+..+.+..++..++++...|. +|.+
T Consensus 176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 55555666666677888777776 5554
No 425
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=94.64 E-value=0.06 Score=62.24 Aligned_cols=129 Identities=14% Similarity=0.175 Sum_probs=82.7
Q ss_pred ecccCCCCceEEEEc----CCCceeeeecccccCccccccceEEEEEcCCccccce----eeeecCCCCCeEEEEEcC--
Q 001403 329 TLIEGSSSPMSMDFH----PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK----TALVRDPGVSVNRVVWSP-- 398 (1084)
Q Consensus 329 ~l~~h~~~V~~v~~s----pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~----~~~~~~h~~~V~~v~fsp-- 398 (1084)
.++|..++|-.++|- |.|+.++ |.+.|||+.--...++ ......-...+.-|.|.|
T Consensus 127 l~kgf~G~v~dl~fah~~~pk~~~~v--------------g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~ 192 (1283)
T KOG1916|consen 127 LAKGFPGGVGDLQFAHTKCPKGRRLV--------------GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIA 192 (1283)
T ss_pred HHhcCCCCcccccccccCChHHHHHh--------------hhhheeehHhhccccccceEEeecCcCCCCcceeeecccc
Confidence 456777888888883 3444222 7788999863211111 111222234445555554
Q ss_pred -CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe-----------ecCCCcEEEEEEeCCCcEEEEECC-
Q 001403 399 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-----------SAPCKQISVITCGDDKTIKVWDAV- 465 (1084)
Q Consensus 399 -dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~-----------s~d~~~l~l~s~~~d~~i~vwd~~- 465 (1084)
+.-++..+-.+++|++.++++... ..+.+|...+..++| ||||+ .+++++.||.+++|.+-
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~----~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qiyi 266 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALR----SLFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQIYI 266 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHH----HHHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeeeee
Confidence 677888888889998877776532 135568877777654 89999 89999999988888653
Q ss_pred ----CCceeeEeccCC
Q 001403 466 ----TGSRTYSFEGHG 477 (1084)
Q Consensus 466 ----~g~~~~~~~~h~ 477 (1084)
.-++++.++.|.
T Consensus 267 ~g~~~~rclhewkphd 282 (1283)
T KOG1916|consen 267 TGKIVHRCLHEWKPHD 282 (1283)
T ss_pred eccccHhhhhccCCCC
Confidence 334566777776
No 426
>PHA03098 kelch-like protein; Provisional
Probab=94.60 E-value=1.7 Score=51.64 Aligned_cols=153 Identities=8% Similarity=-0.014 Sum_probs=74.5
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC--CeeEEEecCCCceEeee
Q 001403 490 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~ 562 (1084)
++.+++.|+.+ ..+..||..+..-......+.......+..-+++..+.||....+ ...+..||+.+++....
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 44667777765 246677766543222111111111111122356666666632221 24688999887654332
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECC--------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
-.... ...... +...++..++.|+.+ ..+.+||..+++....-..... .....+..-+++.++.|+.
T Consensus 422 ~~~p~-~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~ 496 (534)
T PHA03098 422 SPLPI-SHYGGC--AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGGD 496 (534)
T ss_pred CCCCc-cccCce--EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc--cccceEEEECCEEEEEcCC
Confidence 21111 001111 222345566666542 2388899888766543322111 1111122236777777765
Q ss_pred C-----CeEEEEEcCCCC
Q 001403 635 E-----NRIKILETPESN 647 (1084)
Q Consensus 635 d-----g~i~iwd~~~~~ 647 (1084)
+ +.+.+||..+.+
T Consensus 497 ~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 497 KYEYYINEIEVYDDKTNT 514 (534)
T ss_pred cCCcccceeEEEeCCCCE
Confidence 4 467888877653
No 427
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=94.59 E-value=0.12 Score=37.15 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
...|.+++|+| ...+||.|+.+|.|.+|.+ +++.+
T Consensus 11 ~~~v~~~~w~P-~mdLiA~~t~~g~v~v~Rl-~~qri 45 (47)
T PF12894_consen 11 PSRVSCMSWCP-TMDLIALGTEDGEVLVYRL-NWQRI 45 (47)
T ss_pred CCcEEEEEECC-CCCEEEEEECCCeEEEEEC-CCcCc
Confidence 35699999999 8999999999999999998 55543
No 428
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.29 E-value=1.1 Score=52.26 Aligned_cols=119 Identities=8% Similarity=0.116 Sum_probs=74.8
Q ss_pred CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-ccccCEEEEEEc--CCCCEEEEEeCCCcEEEEeCCCC
Q 001403 834 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~-~h~~~V~~l~~s--pd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.-..++-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|. |||+.+++.|-.+.|.++.-...
T Consensus 28 ~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~ 106 (631)
T PF12234_consen 28 GISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRY 106 (631)
T ss_pred CCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccch
Confidence 334455555555 45555554455689999999887443222 356789999887 79999999999999999864321
Q ss_pred ----ceeeeeeeecC--CCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEc
Q 001403 911 ----GIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 956 (1084)
Q Consensus 911 ----~~~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~ 956 (1084)
.......++.. ..+. ..+|.+..|-+||.+++ +.++.+.|+|-
T Consensus 107 dy~~~~p~w~~i~~i~i~~~T--~h~Igds~Wl~~G~LvV-~sGNqlfv~dk 155 (631)
T PF12234_consen 107 DYTNKGPSWAPIRKIDISSHT--PHPIGDSIWLKDGTLVV-GSGNQLFVFDK 155 (631)
T ss_pred hhhcCCcccceeEEEEeecCC--CCCccceeEecCCeEEE-EeCCEEEEECC
Confidence 11111111111 1111 12688999999998655 45677888764
No 429
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.24 E-value=1.1 Score=52.37 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=77.9
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC----
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD---- 509 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~---- 509 (1084)
...-+.-|.-++ ..+..+...++.|||...+...++-. ...+.|..+.|...++++.+++.+....|.++.-.
T Consensus 31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy 108 (631)
T PF12234_consen 31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY 108 (631)
T ss_pred CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence 444555555565 44444445689999999887554433 35788999999999999999999999999998431
Q ss_pred -CCCc----e--EeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 510 -SLGA----R--VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 510 -~~~~----~--~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
...+ . ..+.. ..++|....|.++|..++.++. .+.++|-
T Consensus 109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk 155 (631)
T PF12234_consen 109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDK 155 (631)
T ss_pred hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECC
Confidence 1111 1 11222 3357889999999998887743 4888774
No 430
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=5.3 Score=46.41 Aligned_cols=181 Identities=13% Similarity=0.124 Sum_probs=97.4
Q ss_pred eEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee----cccccCEEEEEEcCCCC
Q 001403 816 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL----EGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l----~~h~~~V~~l~~spd~~ 891 (1084)
.|+||++. |..+..+.-..+.+..+.|+. + .-|.+...+|++++|++. |+.+... +.....|..+.|..+|-
T Consensus 65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecc-hhhhcccccccccccCceeEEEEecCce
Confidence 47888874 666655554455888999996 4 456668899999999986 3333221 22233465566666664
Q ss_pred EEEEEeCCCcEE-EEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC--EEEEEeCC--eEEEEEcCCcce-eeEe
Q 001403 892 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVHET--HLAIYEAEELTC-LKQW 965 (1084)
Q Consensus 892 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~--~la~~~d~--~i~vwd~~~~~~-~~~~ 965 (1084)
.+.+. +|++. +-+++..... .+....+... ...+-+.-+++. .+...-+- -..++-.+.+.. ...+
T Consensus 141 avlt~--~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~ 212 (829)
T KOG2280|consen 141 AVLTV--SGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHAL 212 (829)
T ss_pred EEEec--CCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceeccccccccc
Confidence 44443 44443 3333331111 1111111110 112222222211 11111110 111222221111 1111
Q ss_pred ecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 966 FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 966 ~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
... ...+..+..||+.++|+--..+|.|.+-..+..+..+.+.
T Consensus 213 ~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 213 SWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred CCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 111 4678889999999999999999999999999888877776
No 431
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=94.05 E-value=2.7 Score=41.37 Aligned_cols=157 Identities=11% Similarity=0.117 Sum_probs=88.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE----eCC---eEEEE
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY 954 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~----~d~---~i~vw 954 (1084)
..++-+.. ..|..+...+.|.+|++...+......+.+. +.|..+.++..|.+|++- ... .+|+|
T Consensus 21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-------~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y 92 (215)
T PF14761_consen 21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTV-------GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY 92 (215)
T ss_pred ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcch-------hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence 33444432 3343335667799999996554443344443 268899999999999993 222 45664
Q ss_pred ---EcC--CcceeeEeecCC---------------------CCCEEEEEEcc-CCCEEEEEeCCCcEEEEEcCCCce-eE
Q 001403 955 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEV-QC 1006 (1084)
Q Consensus 955 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~-~~ 1006 (1084)
+.. ....++....|| +.++.+++..| .|+.|+ |+ ++.+.+|.+..... ..
T Consensus 93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlV-g~-~~~l~lf~l~~~~~~~~ 170 (215)
T PF14761_consen 93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLV-GC-GNKLVLFTLKYQTIQSE 170 (215)
T ss_pred EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEE-Ec-CCEEEEEEEEEEEEecc
Confidence 322 122222222232 44666777777 455444 54 56899998887655 22
Q ss_pred EeccccccCCC-CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1007 RILSTAYLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1007 ~~~~~~~~~~~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
++....+.+.. .+...+.+..+++- ++++|..+ +-.++++.+
T Consensus 171 ~~~~lDFe~~l~~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl 213 (215)
T PF14761_consen 171 KFSFLDFERSLIDHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL 213 (215)
T ss_pred cccEEechhhhhheecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence 12111121111 13445667777777 46777664 667777765
No 432
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=93.95 E-value=9.1 Score=39.80 Aligned_cols=215 Identities=12% Similarity=0.119 Sum_probs=123.3
Q ss_pred cEeEEEeecCCCcEEEEEEeCCCcEEEEECC------CC-ceeeEecc-----CCCcEEEEeeccc------CCC----c
Q 001403 435 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TG-SRTYSFEG-----HGAPVYSLCPHAK------ENI----H 492 (1084)
Q Consensus 435 ~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~------~g-~~~~~~~~-----h~~~v~~~~~~~~------~~~----~ 492 (1084)
.-+.|+|+|.+. +-++....+...+||.. .. ..+.++.. .....+.+.|+.. .++ .
T Consensus 24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 457899999887 67777778899999986 12 22333332 1234555555422 111 2
Q ss_pred EEEEEecCCeEEEEECCCCCc-----eEeecCC--CCeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEe--e
Q 001403 493 FIFSISVDGKIKAWLYDSLGA-----RVDYDAP--GLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R 561 (1084)
Q Consensus 493 ~l~s~s~dg~i~iwd~~~~~~-----~~~~~~~--~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~--~ 561 (1084)
.++.+++||+|.-|...-... ...+... ..-...+++.. .+.+|+.+-. ..++|.++|-.=.+.. .
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g 178 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG 178 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence 367889999999997533222 1222211 22334555543 4677777654 2667888885422211 0
Q ss_pred eeeccccc--cCc-----------eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec----
Q 001403 562 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---- 624 (1084)
Q Consensus 562 ~~~~~~~~--~~~-----------v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---- 624 (1084)
.+...... ..+ |+...-.++...=+.|..-|.|-+||. .|++++.+...+....-..++..|
T Consensus 179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG 257 (336)
T TIGR03118 179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG 257 (336)
T ss_pred CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence 01111000 000 111111222222233344578999998 578888887666655566777755
Q ss_pred --CCCEEEEEECCCeEEEEEcCCCCeeeecccc
Q 001403 625 --NGTLLAVIANENRIKILETPESNSVDAAGVL 655 (1084)
Q Consensus 625 --~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 655 (1084)
.+.+|+---.||+|..+|..+++.+..+...
T Consensus 258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~ 290 (336)
T TIGR03118 258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP 290 (336)
T ss_pred CCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence 3666776667999999999998877766643
No 433
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=93.65 E-value=0.23 Score=48.54 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=64.7
Q ss_pred CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe-ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-
Q 001403 400 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG- 477 (1084)
Q Consensus 400 g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~- 477 (1084)
++.+++|+.+|.|.+|++..-..... ....-...|.++.- ..++. +..+++.|+.|+.|++.-++.+.....|.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~~d--~~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~ 145 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAHSD--RVCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHNF 145 (238)
T ss_pred CceEEeecccceEEEecCCccchHHH--hhhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeeccccC
Confidence 56788999999999999873211110 01111223333322 23333 67788889999999999888887777777
Q ss_pred CcEEEEeecccCCCcEEEEE--ecCCeEEEEECCC
Q 001403 478 APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS 510 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~--s~dg~i~iwd~~~ 510 (1084)
.++...... ..+.+++.+ |.|..++.|++..
T Consensus 146 ~~~e~~ivv--~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 146 ESGEELIVV--GSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred CCcceeEEe--cCCceEEeeccccchhhhhcchhh
Confidence 444444432 233456665 6667777776653
No 434
>PHA03098 kelch-like protein; Provisional
Probab=93.64 E-value=2.3 Score=50.50 Aligned_cols=197 Identities=11% Similarity=0.004 Sum_probs=91.1
Q ss_pred CCCCEEEEEeCCC------EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCC
Q 001403 398 PDGSLLGVAYSKH------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVT 466 (1084)
Q Consensus 398 pdg~~las~~~dg------~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~ 466 (1084)
.++..++.|+.++ .+..||..+++-.. ...+.........+ .-+++ +.+.||.+ ..+..||..+
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~-~~~~~~~R~~~~~~--~~~~~--lyv~GG~~~~~~~~~v~~yd~~~ 367 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNK-VPELIYPRKNPGVT--VFNNR--IYVIGGIYNSISLNTVESWKPGE 367 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeE-CCCCCcccccceEE--EECCE--EEEEeCCCCCEecceEEEEcCCC
Confidence 3456666665432 47788877754321 11111111111222 22455 55666654 3577888876
Q ss_pred Cceee--EeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 467 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 467 g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
++-.. .+....... +++. . ++.+.+.|+.+ ..+..||..+.+-......+.......+...++...+.
T Consensus 368 ~~W~~~~~lp~~r~~~-~~~~--~-~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~ 443 (534)
T PHA03098 368 SKWREEPPLIFPRYNP-CVVN--V-NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVI 443 (534)
T ss_pred CceeeCCCcCcCCccc-eEEE--E-CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEE
Confidence 64321 111111111 1111 1 44566666632 35778887654322211111111111222345666666
Q ss_pred EeeCCCC----CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEE
Q 001403 539 CGTSKEG----ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLT 606 (1084)
Q Consensus 539 ~~~~~~~----~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~ 606 (1084)
|+..... -..+.+||..+++....-.... .......+.+ +++.++.|+.+ ..+.+||..+.+...
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~ 517 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNF-PRINASLCIF--NNKIYVVGGDKYEYYINEIEVYDDKTNTWTL 517 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCc-ccccceEEEE--CCEEEEEcCCcCCcccceeEEEeCCCCEEEe
Confidence 6543221 1348889988776543221111 0111222222 56666667654 467888887766543
No 435
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.63 E-value=22 Score=43.13 Aligned_cols=93 Identities=10% Similarity=0.033 Sum_probs=56.4
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCC-ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.-.|..+.++|+|++++..+...|.|..+.. ......+.+....|.|-.+.- +..++
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~--------------------- 141 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF--------------------- 141 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc---------------------
Confidence 4478899999999999999877777766632 111112222222222222221 11111
Q ss_pred eecccccCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC
Q 001403 873 KLEGHSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd---~~~l~s~s~dg~I~iwd~~~ 909 (1084)
...+...|..+.|+|. +..|+.-..|+++++||+..
T Consensus 142 -~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 -TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred -cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 1123456778888885 47888888899999999975
No 436
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.46 E-value=1.8 Score=52.01 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=62.2
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------C--ceeEEecccc-ccCCCCcccceeeeEEEECCC--C
Q 001403 970 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTA-YLRPTTSCLHVYPHAIAAHPL--K 1034 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~----------~--~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~--d 1034 (1084)
.-.|..|.++++|++|+..|..| |.|-.+.. | +..|+..+.. .+-. .+.......+.|||. +
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~--~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFT--SNSSLEIKQVRWHPWSES 160 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhcc--CCCCceEEEEEEcCCCCC
Confidence 45788999999999999998765 44544432 1 2344433211 1111 133455668999995 3
Q ss_pred CCEEEEEeCCCcEEEEcCCCCCCCcccCC
Q 001403 1035 PTQFAVGLTNGEVYVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw~~~~~~~~~~~~~ 1063 (1084)
+..|++-..|+.+++||+.+...-|++.+
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~~p~~v~~ 189 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQHPWQVLS 189 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCCCCeEEEE
Confidence 58899999999999999988776677665
No 437
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=93.35 E-value=9 Score=40.82 Aligned_cols=170 Identities=10% Similarity=0.062 Sum_probs=96.2
Q ss_pred eEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCC----cEEEEEe-CCCeEEEEEcCCceeeeeeccc-------
Q 001403 816 VISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAIGM-DDSTILIYNARSSEVISKLEGH------- 877 (1084)
Q Consensus 816 ~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~la~g~-~dg~i~iwd~~~~~~~~~l~~h------- 877 (1084)
+|.+||+.+++.++++.-+ .+....+++...++ .++.... ..+.|.|+|+.+++.-+.+..+
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 6899999999988876533 34677888776322 2444443 3458999999998754443322
Q ss_pred ------------ccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceeeee---------eeecCCCCccCCCCceE
Q 001403 878 ------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQTCR---------SLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 878 ------------~~~V~~l~~sp---d~~~l~s~s~dg~I~iwd~~~~~~~~~~---------~~~~~~~~~~~~~~v~~ 933 (1084)
.+.+..++.+| |+++|....-.+ -++|.+.+....... .++.. +.. ......
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~~s~g 190 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GSQSDG 190 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----SECE
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHHHhhCccccccccccccceec-ccc--CCCCce
Confidence 23366677765 666777665444 345555442111100 00100 000 013567
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcc---eeeEeec-CC-CCCEEEEEEcc--CCCEEEEEe
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELT---CLKQWFP-IS-SVPISQATFSC--DCRMVFTSF 989 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~---~~~~~~~-~h-~~~v~~l~fs~--dg~~l~t~~ 989 (1084)
++++++|.+..+ ...+.|..|+..+.- ....+.. .. -..+.++.+.+ +|.+.+.+.
T Consensus 191 ~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 191 MAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN 254 (287)
T ss_dssp EEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred EEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence 899999998888 588899999987511 1222221 22 35678899988 777666553
No 438
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=93.27 E-value=13 Score=41.73 Aligned_cols=201 Identities=11% Similarity=0.005 Sum_probs=109.4
Q ss_pred ecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCC--CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-
Q 001403 802 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS- 878 (1084)
Q Consensus 802 ~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~- 878 (1084)
..-||+.++...+|.+.-.|..+++.+....... ..+..-.+.. +|+ |+.++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666668888888888888665443221 2333333333 565 7778999999999998999888776555
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe--CCeEEEEEc
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA 956 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d~~i~vwd~ 956 (1084)
-.+..-..-.++..++ ++.++.+...|-.+|+..-.......... .+..-....++...+... ++.+.-.|.
T Consensus 143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~ 216 (370)
T COG1520 143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA 216 (370)
T ss_pred eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence 1122222223433332 33667777777776654332111110000 011111133444444433 456777777
Q ss_pred CCcceeeEeecCCCCCEE---EEEEcc-----CCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 957 EELTCLKQWFPISSVPIS---QATFSC-----DCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~---~l~fs~-----dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
.+|.........+...-+ ...... .+.-+..++.+|.+...|..+|+.+.++..
T Consensus 217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 778776653221111110 011111 122245667788899999999999877774
No 439
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=93.18 E-value=11 Score=38.35 Aligned_cols=193 Identities=12% Similarity=0.098 Sum_probs=126.5
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+....-..+..-|||..-++-+.. -|.-.|-++.+....
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f- 139 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRF- 139 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEe-
Confidence 446778888 88899999888889888999998766555555566778888998877764443 355556655543332
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCC----------eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~----------~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
.....+. ........|.++|.+-.++..| .|++|+... ...-..||..|||..-+
T Consensus 140 --~lp~~~a--~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPq-----------G~gpyGi~atpdGsvwy 204 (353)
T COG4257 140 --PLPLEHA--DANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQ-----------GGGPYGICATPDGSVWY 204 (353)
T ss_pred --ecccccC--CCcccceeeCCCccEEEeeccccceecCcccCceeeeccCC-----------CCCCcceEECCCCcEEE
Confidence 2222221 1357789999999998886433 355555442 33456789999999988
Q ss_pred EEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 987 TSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 987 t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
+.-.+..|..-|..++... .+.....+..+ +..+..+|+ |..-++....|.++.+|.+...
T Consensus 205 aslagnaiaridp~~~~ae-v~p~P~~~~~g-------sRriwsdpi-g~~wittwg~g~l~rfdPs~~s 265 (353)
T COG4257 205 ASLAGNAIARIDPFAGHAE-VVPQPNALKAG-------SRRIWSDPI-GRAWITTWGTGSLHRFDPSVTS 265 (353)
T ss_pred EeccccceEEcccccCCcc-eecCCCccccc-------ccccccCcc-CcEEEeccCCceeeEeCccccc
Confidence 8777888888887777322 22211111111 122445564 6777777777888888876544
No 440
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.03 E-value=0.051 Score=62.78 Aligned_cols=140 Identities=14% Similarity=0.083 Sum_probs=84.3
Q ss_pred CCeEEEEEcCCce-eeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCce
Q 001403 857 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET 932 (1084)
Q Consensus 857 dg~i~iwd~~~~~-~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~ 932 (1084)
.+.+++-+..+.- .-..++|..+.|..+.|..- ...++ -.-|.+.|||++- |+......+............|.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 4557776665432 12345677788888888642 12222 2336789999874 44333333333332222123455
Q ss_pred EEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEE-----------EccCCCEEEEEeCCCcEEEEEcC
Q 001403 933 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 933 ~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.+-|-++..++..+ .++.+++....+... .++.+|...+..++ .||||+.++.+..||.++.|.+.
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy 265 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY 265 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence 55566677666665 556677666544332 33445766666554 48999999999999999999865
No 441
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=93.00 E-value=28 Score=42.50 Aligned_cols=187 Identities=13% Similarity=0.053 Sum_probs=104.9
Q ss_pred eEEEEEcCCceeeeeecccc----cCEEEEEEcCCCC--EEEEEe-----------CCCcEEEEeCCCCceeeeeeeecC
Q 001403 859 TILIYNARSSEVISKLEGHS----KRVTGLVFSDALN--ILVSSG-----------GDAQIFVWDVDGWGIQTCRSLQTP 921 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~h~----~~V~~l~~spd~~--~l~s~s-----------~dg~I~iwd~~~~~~~~~~~~~~~ 921 (1084)
.|++.|..+++.+..+.-.. -.|..+.|+.... +++.++ .+|.++.|++-..... ...+...
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~-lellh~T 932 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDK-LELLHKT 932 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCce-eeeeecc
Confidence 47788877776655444211 2456666764332 333332 2334555554432211 1111111
Q ss_pred CCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 922 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 922 ~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.- .-.-.+..|-..++.+|....+++||+...+.++.....+ ...|+.+++- +..+++|...-.|..+..+
T Consensus 933 ~~------~~~v~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 933 EI------PGPVGAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CC------CccceEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEe
Confidence 10 1223566787789999999999999998887776644444 5667777754 5578888776667665544
Q ss_pred CC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCC
Q 001403 1001 NL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1001 ~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 1064 (1084)
.. ..+..+.- ... ...|. ++.+- |-..++.|+.=|++.+-.++..-.......|
T Consensus 1005 ~~~n~l~~fad-D~~-----pR~Vt--~~~~l--D~~tvagaDrfGNi~~vR~P~d~~e~~~edp 1059 (1205)
T KOG1898|consen 1005 REDNQLIVFAD-DPV-----PRHVT--ALELL--DYDTVAGADRFGNIAVVRIPPDVSEEASEDP 1059 (1205)
T ss_pred cCCCeEEEEeC-CCc-----cceee--EEEEe--cCCceeeccccCcEEEEECCCcchhhhccCC
Confidence 43 22223331 111 11122 22222 4679999999999999988665544333333
No 442
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.93 E-value=5 Score=44.81 Aligned_cols=147 Identities=9% Similarity=0.053 Sum_probs=77.6
Q ss_pred cCEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCCCC--ceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 879 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDGW--GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s-----------~dg-~I~iwd~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
.....|+|.++|+++++-. ..+ .|.+++-..+ .......+..... ....+++.++| +++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~------~p~Gi~~~~~G-lyV 86 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELS------MVTGLAVAVGG-VYV 86 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCC------CccceeEecCC-EEE
Confidence 3456789999998887753 223 6777765432 2222222222111 35689999999 444
Q ss_pred EEeCCeEEEE-EcCC-c----c--eeeEeecC----CCCCEEEEEEccCCCEEEEEeCC-------------------Cc
Q 001403 945 LVHETHLAIY-EAEE-L----T--CLKQWFPI----SSVPISQATFSCDCRMVFTSFVD-------------------GT 993 (1084)
Q Consensus 945 ~~~d~~i~vw-d~~~-~----~--~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~~d-------------------g~ 993 (1084)
+ ....|..| |... + + .+..-+.. +......++|.|||.+.++.+.. |.
T Consensus 87 ~-~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 87 A-TPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred e-CCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4 34445544 4431 1 1 12221211 13447789999999877765521 33
Q ss_pred EEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC
Q 001403 994 LSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG 1045 (1084)
Q Consensus 994 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg 1045 (1084)
|.-++..+++.. .+. ...-.+..++|+| +|+++++-..++
T Consensus 166 i~r~~pdg~~~e-~~a----------~G~rnp~Gl~~d~-~G~l~~tdn~~~ 205 (367)
T TIGR02604 166 LFRYNPDGGKLR-VVA----------HGFQNPYGHSVDS-WGDVFFCDNDDP 205 (367)
T ss_pred EEEEecCCCeEE-EEe----------cCcCCCccceECC-CCCEEEEccCCC
Confidence 444444444332 111 1123345689998 577776644333
No 443
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=92.76 E-value=5.4 Score=38.68 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=92.8
Q ss_pred CCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 805 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 805 dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
+|+++.+.+ ...|++||+.+|+.+..-.-....+..=-...-+..+.+---.+|.-.++|.++.+++.++. ..+.=
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556666665 36799999999998766543322221111111023344445678889999999988877665 23333
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcc
Q 001403 882 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT 960 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~ 960 (1084)
+.++ .|++.|..++...+++.-|-++-.......+ +.++... ..+.-+.|- ||...|- -....|...+..+|+
T Consensus 134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr 207 (262)
T COG3823 134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR 207 (262)
T ss_pred eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence 4443 3666677766666677777665322221111 1111110 011122221 3433332 233444444555555
Q ss_pred eeeEe-----------ecCCCCCEEEEEEccCC-CEEEEE
Q 001403 961 CLKQW-----------FPISSVPISQATFSCDC-RMVFTS 988 (1084)
Q Consensus 961 ~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~ 988 (1084)
.+.-+ ...|..-...+++.|++ ++++||
T Consensus 208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 44322 22244566788999877 555555
No 444
>PHA02790 Kelch-like protein; Provisional
Probab=92.29 E-value=5.4 Score=46.35 Aligned_cols=185 Identities=8% Similarity=-0.041 Sum_probs=88.0
Q ss_pred EEEEEeCC-----CcEEEEECCCCceee--EeccCCCcEEEEeecccCCCcEEEEEecCC--eEEEEECCCCCceEeecC
Q 001403 449 SVITCGDD-----KTIKVWDAVTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d-----~~i~vwd~~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg--~i~iwd~~~~~~~~~~~~ 519 (1084)
+++.||.+ .++..||..+++... .+.........+.. ++.+.+.|+.++ .+..||....+-......
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~----~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l 349 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPA----NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL 349 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEE----CCEEEEECCcCCCCceEEEECCCCeEEECCCC
Confidence 44555543 246677877654322 12111111112222 456667777543 477787654322211111
Q ss_pred CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 520 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 520 ~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+.......+..-+|+..+.||.++. ...+..||..+.+-...-.-.. .......+ .-++...+.| |.+.+||.
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~-~r~~~~~~--~~~~~IYv~G---G~~e~ydp 422 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY-PHYKSCAL--VFGRRLFLVG---RNAEFYCE 422 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC-ccccceEE--EECCEEEEEC---CceEEecC
Confidence 1111112223346676677665332 3557889988765543221111 01111222 2345555555 35778999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCC
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPES 646 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~ 646 (1084)
.+++....-...... ...-+..-+++..++|+.+ ..+..||..++
T Consensus 423 ~~~~W~~~~~m~~~r--~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 423 SSNTWTLIDDPIYPR--DNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred CCCcEeEcCCCCCCc--cccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence 887665443322211 1122223367788887754 35667776654
No 445
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.19 E-value=9.3 Score=44.53 Aligned_cols=185 Identities=10% Similarity=0.114 Sum_probs=97.3
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE---eecCCCCeEEEEEEcCC
Q 001403 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 456 d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~d 532 (1084)
--.|+|++ .+|+.+.++.-..+.+-.+.|+- + ..|+....+|++++|++-...... ........|..+.+..+
T Consensus 63 ~~~I~If~-~sG~lL~~~~w~~~~lI~mgWs~--~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~ 138 (829)
T KOG2280|consen 63 RPYIRIFN-ISGQLLGRILWKHGELIGMGWSD--D-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHN 138 (829)
T ss_pred ceeEEEEe-ccccchHHHHhcCCCeeeecccC--C-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecC
Confidence 44688888 57887777655455788888843 3 578999999999999875433222 12233345666666666
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEE---EcCCCCEEEEEECCCc--EEEEECCCCeEEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH---FDTAKDQILAAGDDHV--IKIWDMNKVQLLTT 607 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~---~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~ 607 (1084)
|-.+.+.+ +.+.+-+-........++... .......+ +.|.........-+-. ..+...... ..+.
T Consensus 139 GVavlt~~------g~v~~i~~~~~~~~~~~~diP--~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~-~~q~ 209 (829)
T KOG2280|consen 139 GVAVLTVS------GQVILINGVEEPKLRKMPDIP--YNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEES-RVQL 209 (829)
T ss_pred ceEEEecC------CcEEEEcCCCcchhhhCCCCC--CccCCCcceeEecCCCcceeEEeechhhhhcccceecc-cccc
Confidence 65555543 224443322222223332211 01111112 2221111111111100 011111111 0111
Q ss_pred EcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 608 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 608 ~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.........+..++.||+.++|+.-...|.|.+-+....+.+..+.
T Consensus 210 ~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 210 HALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred cccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1111112347789999999999999999999999888776665554
No 446
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=2.5 Score=51.19 Aligned_cols=145 Identities=11% Similarity=0.068 Sum_probs=88.4
Q ss_pred CEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCceee---eeeeecCCCCccCCCCceEEEEccCCCE--EEEEeCCeEE
Q 001403 880 RVTGLVFSDALNILVSS--GGDAQIFVWDVDGWGIQT---CRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLVHETHLA 952 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~--s~dg~I~iwd~~~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~dg~~--la~~~d~~i~ 952 (1084)
+|..+...+|+...+.. +.+-.|..||+..-.... ...+....-.........++.|.|.=-. ++.-.|+.|+
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~ 181 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR 181 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence 56667777787665543 344478899988633221 1111111111111234567778776433 3335888888
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+..+........-. .-....++++|||.|+.++.|-..|++.-|... ++...++......+ .+++++++|-.
T Consensus 182 V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e------~yrvl~v~Wl~ 253 (1405)
T KOG3630|consen 182 VKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEE------NYRVLSVTWLS 253 (1405)
T ss_pred hhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCC------CcceeEEEEec
Confidence 88775433332211 235678999999999999999999999887654 56665665444433 25677888874
No 447
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.69 E-value=0.5 Score=50.61 Aligned_cols=158 Identities=9% Similarity=0.093 Sum_probs=97.1
Q ss_pred CCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE-EEcCC-CC----CeE-EEEEcCCCCcEEEEEeCCCeEEEE-E
Q 001403 793 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMPP-SP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N 864 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~-~~~~~-~~----~i~-~l~~s~~d~~~la~g~~dg~i~iw-d 864 (1084)
....+..+-..|||+.+..-+..++.++++.+..... .+... .+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4567888899999999999988999999987543321 11111 11 122 222233 67778889999988877 4
Q ss_pred cCCc-e----eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 865 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 865 ~~~~-~----~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
...+ . .+..++-...++..+.--.+.+-+++-+..|++.++.....+.. ..+... ..+..+++||.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l---L~~~~~------~~~~~~~~Sp~ 368 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL---LFERAY------QAPQLVAMSPN 368 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce---ehhhhh------cCcceeeeCcc
Confidence 4332 2 11222212233333332234456777788888887765553211 111111 14668999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcc
Q 001403 940 QTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~~ 960 (1084)
+.++++-..|.++++.+++..
T Consensus 369 ~~~Ll~e~~gki~~~~l~Nr~ 389 (733)
T COG4590 369 QAYLLSEDQGKIRLAQLENRN 389 (733)
T ss_pred cchheeecCCceEEEEecCCC
Confidence 999999888999999887544
No 448
>PHA02790 Kelch-like protein; Provisional
Probab=91.57 E-value=7.3 Score=45.31 Aligned_cols=184 Identities=11% Similarity=-0.012 Sum_probs=92.4
Q ss_pred CCCEEEEEe-C-----CeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCce--eee
Q 001403 805 NDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSE--VIS 872 (1084)
Q Consensus 805 dg~~l~~~s-d-----g~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~--~~~ 872 (1084)
++..+++|+ + ..+..||..+.+-.. .+.........+ .- ++++.++|+.++ .+..||..+++ .+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 445555554 2 347778877654322 222111122222 23 678888888643 68888876542 223
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
.+.........+ .-+|++.+.||.++ .+..||..+..-.....+.... ....+..-+|++.+.| |
T Consensus 348 ~l~~~r~~~~~~--~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r--------~~~~~~~~~~~IYv~G--G 415 (480)
T PHA02790 348 SLLKPRCNPAVA--SINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH--------YKSCALVFGRRLFLVG--R 415 (480)
T ss_pred CCCCCCcccEEE--EECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc--------ccceEEEECCEEEEEC--C
Confidence 332111111222 23688888888654 4678888775432211111111 1122334566666665 4
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCce
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1004 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~ 1004 (1084)
.+.+||..+++-.......+...-.+++ .-+|+..+.||.+ .+|.+||..+++.
T Consensus 416 ~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W 474 (480)
T PHA02790 416 NAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW 474 (480)
T ss_pred ceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence 5678888765433221111111111222 3467777778754 3466777776654
No 449
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=3.3 Score=45.64 Aligned_cols=99 Identities=14% Similarity=0.105 Sum_probs=68.1
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEE---------cCCCc--eeEEecccc-ccCCCCcccceeeeEEEECCCC--C
Q 001403 970 SVPISQATFSCDCRMVFTSFVDGTLSIHE---------ASNLE--VQCRILSTA-YLRPTTSCLHVYPHAIAAHPLK--P 1035 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~dg~i~vwd---------~~~~~--~~~~~~~~~-~~~~~~~~~~v~~~~~~~~p~d--~ 1035 (1084)
.-.|..+..|+.|..++-.|.+|.+.++= ++.|+ ..|+..+.. .+-. .+.++....++|||+. .
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ft--ss~~ltl~Qa~WHP~S~~D 180 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFT--SSTSLTLKQAAWHPSSILD 180 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeec--cCCceeeeeccccCCccCC
Confidence 34677888899999999999998655432 23342 344433211 1111 2345777788999963 4
Q ss_pred CEEEEEeCCCcEEEEcCCCCCCCcccCCCCCcccC
Q 001403 1036 TQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD 1070 (1084)
Q Consensus 1036 ~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~ 1070 (1084)
..|+.-+.|..+++|++++..--|..++|..+.+.
T Consensus 181 ~hL~iL~sdnviRiy~lS~~telylqpgepgRS~t 215 (741)
T KOG4460|consen 181 PHLVLLTSDNVIRIYSLSEPTELYLQPGEPGRSPT 215 (741)
T ss_pred ceEEEEecCcEEEEEecCCcchhhccCCCcCCCCc
Confidence 68888899999999999998878888777664443
No 450
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.26 E-value=6.8 Score=42.59 Aligned_cols=142 Identities=8% Similarity=0.041 Sum_probs=84.2
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
.+.+-|.. .++.|. +...|.+.=|-.... -++.--....++|.++.||+|.+.||.--.|.+|.+.+....+...
T Consensus 25 sngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l 102 (657)
T KOG2377|consen 25 SNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQL 102 (657)
T ss_pred ccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhh
Confidence 34555654 233333 333444555544321 1222222356799999999999999999999999999985533221
Q ss_pred eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEE
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF 986 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~ 986 (1084)
..... +......|....|+.+ .-+|...+..+.+|-....+..-.....|+..|.=-.|.++-+.++
T Consensus 103 ~~~~~----ck~k~~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~L 169 (657)
T KOG2377|consen 103 EYTQE----CKTKNANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVIL 169 (657)
T ss_pred HHHHH----hccCcceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEe
Confidence 11111 1111124888888877 5566666666777776544333333455666777777777766543
No 451
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=91.24 E-value=23 Score=37.74 Aligned_cols=167 Identities=11% Similarity=0.078 Sum_probs=91.0
Q ss_pred cEEEEECCCCceeeEecc------CCCcEEEEeecccCC----CcEEEEEecCCeEEEEECCCCCceEeecCC-------
Q 001403 458 TIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAP------- 520 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~------h~~~v~~~~~~~~~~----~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------- 520 (1084)
.|.+||+.+++.++++.- ..+.+..+.+...+. +...++-+..+-|.++|+.+++........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~ 114 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA 114 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence 688899999998877643 245677777755332 233444445567999999886654433221
Q ss_pred ------------CCeEEEEEEcC---CCCEEEEEeeCCCCCeeEEEecCCC-----ce---------EeeeeeccccccC
Q 001403 521 ------------GLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN 571 (1084)
Q Consensus 521 ------------~~~i~~~~~s~---d~~~l~~~~~~~~~~~~i~~wd~~~-----~~---------~~~~~~~~~~~~~ 571 (1084)
...+..++.+| +|+.|+.....+ -.+|.+.+ .. .+..+ +.. ..
T Consensus 115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~ 186 (287)
T PF03022_consen 115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS 186 (287)
T ss_dssp EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence 11355666655 677777665321 12222221 11 11111 111 13
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCC---eEEEEEc-CCCCCCCcceEEEec--CCCEEEEE
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI 632 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~~~~l~~~ 632 (1084)
....++++++|..+++--..+.|..|+..+. +....+. .......+..+.+.+ +|.+.+..
T Consensus 187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s 253 (287)
T PF03022_consen 187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS 253 (287)
T ss_dssp SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence 4567888999988888889999999998861 1122222 222233456777777 56554443
No 452
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=90.82 E-value=37 Score=43.88 Aligned_cols=149 Identities=14% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
|-..++.|.-+|+|.++=. +++.++.||..+...... -......++.+.-.-||+..| =+.+
T Consensus 361 H~A~LTgv~~~~~ge~lRl-----------Hd~~LY~~d~~~~~Wk~~---~~~~d~~~S~Ls~qgdG~lYA-k~~~--- 422 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL-----------HDDRLYQFDPNTARWKPP---PDKSDTPFSSLSRQGDGKLYA-KDDD--- 422 (1774)
T ss_pred HHHHhhccccCCCCCeEEe-----------ecCceeeeccccceecCC---CCcccchhhhhcccCCCceEe-cCCC---
Confidence 4445666666666666544 347888888775443311 011234556666666777766 2222
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC------ce--eeEeccCCCcEEEEe
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SR--TYSFEGHGAPVYSLC 484 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g------~~--~~~~~~h~~~v~~~~ 484 (1084)
.|-|+..+.... ..-..+.+...+++|.- .+.++-...++.+|++... ++ .-.+.+-.....+|.
T Consensus 423 ~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG~a~A~~Vg 495 (1774)
T PF11725_consen 423 TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADGKAQAQSVG 495 (1774)
T ss_pred ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCCchhhhhee
Confidence 244555543211 12235777888999983 3666766667799998743 11 122333333556666
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
+ +++ .|+.+..+|.++.=++..
T Consensus 496 L--s~d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 496 L--SND--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred e--cCC--eEEEEeCCCCEEeccccc
Confidence 6 333 688889999888776654
No 453
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=90.54 E-value=24 Score=36.81 Aligned_cols=253 Identities=11% Similarity=0.099 Sum_probs=122.8
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCC-------Ceeeeccc-----cccceeEEEEcCCCceeeeeccCceeEecC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~-------~~~~~~~~-----~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~ 684 (1084)
-..++++|.+.+.++....+...+||.... ..+-.+.. .....+.+.|+.... ..+..
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~----------F~vt~ 94 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT----------FVVSG 94 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------eEEcC
Confidence 467999999988888877889999998621 11112211 111233333432211 11111
Q ss_pred CCCCCCCccceecccCccccccceeecCcc-ceeeccCCccccceEEEEEEec--CCCeEEEee-cCCceEEeeccCCcc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSE-CQSLLLPSKVKANKISRLTYNN--GGQAIFALA-SNGVHLMWRWPRNDL 760 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~-~~~~~~~~~~~~~~i~~l~~s~--~g~~l~~~~-~dg~i~vw~~~~~~~ 760 (1084)
........++.+++||+|.-|......... ...+.........-...+++-. .+.+|.++. .+++|.|+|-.-...
T Consensus 95 ~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~ 174 (336)
T TIGR03118 95 EGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPP 174 (336)
T ss_pred CCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccc
Confidence 111122346889999999999965433310 0111111111122233455443 355555543 367888776443322
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCC--CCC
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP--SPT 837 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~--~~~ 837 (1084)
...+...... +..+-.... ....+..-.|+-..-.++++.=+.+. -|.|-+||+. |..++++... -..
T Consensus 175 ~~~g~F~DP~------iPagyAPFn--Iqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNa 245 (336)
T TIGR03118 175 PLPGSFIDPA------LPAGYAPFN--VQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNA 245 (336)
T ss_pred cCCCCccCCC------CCCCCCCcc--eEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccC
Confidence 1111111000 000000000 00000000000001111111111111 3679999975 6777776422 234
Q ss_pred eEEEEEcCC-----CCcEEEEEeCCCeEEEEEcCCceeeeeeccccc------CEEEEEEcC
Q 001403 838 ATSLAFNPH-----DNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------RVTGLVFSD 888 (1084)
Q Consensus 838 i~~l~~s~~-----d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~------~V~~l~~sp 888 (1084)
...|+..|. .+.+|+---.||+|-.||..+|+.+..+....+ ..+.|+|-.
T Consensus 246 PWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 246 PWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 566666542 467777767899999999999988877765332 456777764
No 454
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=90.34 E-value=8.2 Score=45.73 Aligned_cols=174 Identities=13% Similarity=0.107 Sum_probs=93.7
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEE
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV 885 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~ 885 (1084)
+.+++++..+.|.||+......... ..++..+...| .. +...|+.+..|. ..|. |+.+.
T Consensus 49 ~n~LFiA~~s~I~Vy~~d~l~~~p~----~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~ 107 (717)
T PF08728_consen 49 RNLLFIAYQSEIYVYDPDGLTQLPS----RKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK 107 (717)
T ss_pred CCEEEEEECCEEEEEecCCcccccc----cccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence 7788889999999999864322110 01112222222 11 122233333332 1121 23222
Q ss_pred Ec--CCCCEEEEEeCCCcEEEEeCCCCc---------ee--eeeeeecCCCCccCCCCceEEEEc--cCCCEEEEEeC-C
Q 001403 886 FS--DALNILVSSGGDAQIFVWDVDGWG---------IQ--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHE-T 949 (1084)
Q Consensus 886 ~s--pd~~~l~s~s~dg~I~iwd~~~~~---------~~--~~~~~~~~~~~~~~~~~v~~~~~s--~dg~~la~~~d-~ 949 (1084)
.. -+...|+.+.+||.|.+|.++.-- .. .....-.+.-+......++.+++. ...++||++++ .
T Consensus 108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~ 187 (717)
T PF08728_consen 108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ 187 (717)
T ss_pred ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence 22 245677788888888888664200 00 000000011111122368899998 88899999755 4
Q ss_pred eEEEEEcCC--cceeeEeecCCCCCEEEEEEccCC---C---EEEEEeCCCcEEEEEcC
Q 001403 950 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 950 ~i~vwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~i~vwd~~ 1000 (1084)
.|.||-... .+........|...|.+|+|-++. . +|++++-.|.+.+|++.
T Consensus 188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 566665543 221111112356789999998743 2 78889999999998883
No 455
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.95 E-value=33 Score=37.46 Aligned_cols=151 Identities=11% Similarity=0.111 Sum_probs=86.2
Q ss_pred CCCCccEEEecC-CCCEEEEEeCCe------EEEEEcCC--c--eeE-----EEEcCCCC--------CeEEEEEcCCCC
Q 001403 793 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN 848 (1084)
Q Consensus 793 ~~~~v~~l~~s~-dg~~l~~~sdg~------i~vwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~ 848 (1084)
.-+.++.+.+.+ ++++++..++|. +..+++.. + ..+ ..+....+ ..-++++.+ ++
T Consensus 18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g 96 (326)
T PF13449_consen 18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG 96 (326)
T ss_pred ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence 345678899985 555655555565 55555432 1 111 11222221 344788866 78
Q ss_pred cEEEEEeCC------CeEEEEEcCCceeeeeec---------------ccccCEEEEEEcCCCCEEEEEeC-----CC--
Q 001403 849 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA-- 900 (1084)
Q Consensus 849 ~~la~g~~d------g~i~iwd~~~~~~~~~l~---------------~h~~~V~~l~~spd~~~l~s~s~-----dg-- 900 (1084)
.++++--.+ ..|+.++.. |+.+..+. ......-+|+++|||+.|.++.. |+
T Consensus 97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~ 175 (326)
T PF13449_consen 97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR 175 (326)
T ss_pred CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence 888877777 788888876 65544331 13456889999999996665543 22
Q ss_pred c-------EEEEeCC--C-CceeeeeeeecCC-CCccCCCCceEEEEccCCCEEEE
Q 001403 901 Q-------IFVWDVD--G-WGIQTCRSLQTPD-GVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 901 ~-------I~iwd~~--~-~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
. ++++... + +.......+.... ........++.+.+-+++++|+.
T Consensus 176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL 231 (326)
T PF13449_consen 176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL 231 (326)
T ss_pred cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence 1 4555444 3 2122222222221 00001236899999999998887
No 456
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=89.94 E-value=25 Score=35.95 Aligned_cols=233 Identities=11% Similarity=0.048 Sum_probs=133.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..-..|+-+|||..-.++...+.|---|..+|+... .--+....-..|..-|||. .-++-+.. -|.-.|.++.+
T Consensus 62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~---ypLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e 135 (353)
T COG4257 62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVET---YPLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE 135 (353)
T ss_pred CCccccccCCCCceEEecCccccceecCCCCCceEE---EecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence 344568889999888888888888888888887433 1113334455677888887 44443322 45555665554
Q ss_pred ee-eEe--ccCCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 469 RT-YSF--EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 469 ~~-~~~--~~h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
.. ..+ +.-........| ++.|.+-+++... +.|++|+.. .+..-..|+..|||..-
T Consensus 136 vt~f~lp~~~a~~nlet~vf--D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw 203 (353)
T COG4257 136 VTRFPLPLEHADANLETAVF--DPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW 203 (353)
T ss_pred eEEeecccccCCCcccceee--CCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence 32 112 222345556666 5566677766421 234444322 23356788999999987
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCC
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
++.-. .+.|-..|..++.. ..+............+.-+|.+..-++....+.+..+|..+.. -......+....
T Consensus 204 yasla----gnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar 277 (353)
T COG4257 204 YASLA----GNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR 277 (353)
T ss_pred EEecc----ccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence 77443 44577777766632 2222222101334555566778777887777888888877655 334444444444
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
-.++.....++.-.+--..|.|.-+|..+
T Consensus 278 pys~rVD~~grVW~sea~agai~rfdpet 306 (353)
T COG4257 278 PYSMRVDRHGRVWLSEADAGAIGRFDPET 306 (353)
T ss_pred cceeeeccCCcEEeeccccCceeecCccc
Confidence 45555555554444333344555455443
No 457
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=89.90 E-value=22 Score=39.75 Aligned_cols=202 Identities=14% Similarity=0.129 Sum_probs=107.6
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeeccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h--~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
.+.++..+|.|.-.|..+++.+.....- ...+..-.+..+|+ +..++.++.+..+|..+|+..-...... .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~---~--- 142 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG---S--- 142 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC---C---
Confidence 4455677888888888888765433211 12233333333666 6667888888889987777544333332 0
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC--CCCEEEEEEccCCCEEEEEeC--CCcEEEEEcCCCc
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFV--DGTLSIHEASNLE 1003 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~--dg~i~vwd~~~~~ 1003 (1084)
..+....+-.++..++...++.+.-.+..+|+........- ...+..-....++. ++.+.. ++.+.-.|..+|.
T Consensus 143 -~~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~ 220 (370)
T COG1520 143 -PYYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGT 220 (370)
T ss_pred -eEEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCc
Confidence 01223334444544444456777777777777655532211 11111111123343 444444 5677778888888
Q ss_pred eeEEeccccccCCCCc--ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCcccCCC
Q 001403 1004 VQCRILSTAYLRPTTS--CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1004 ~~~~~~~~~~~~~~~~--~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~ 1064 (1084)
...............- ...+..-.+-. +..+..++.+|.+...+...-+..|....+
T Consensus 221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v----~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 221 LKWSQKVSQTIGRTAISTTPAVDGGPVYV----DGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred EeeeeeeecccCcccccccccccCceEEE----CCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 8766431111111100 00111111211 234467777888888888888888888665
No 458
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=89.88 E-value=18 Score=39.57 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=90.6
Q ss_pred CCeEEEEEcCCCCcEEEEEeCCCe------EEEEEcCC--c--eee-----eeeccccc--------CEEEEEEcCCCCE
Q 001403 836 PTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALNI 892 (1084)
Q Consensus 836 ~~i~~l~~s~~d~~~la~g~~dg~------i~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~spd~~~ 892 (1084)
+.+..+.+.++++ .+++.+++|. ++.+++.. + ..+ ..+..-.+ ..-+|++.++|.+
T Consensus 20 GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 5678889987345 4555666776 66555543 1 011 11111111 3347888888888
Q ss_pred EEEEeCC------CcEEEEeCCCCceeeeeeeecCC-------CCccCCCCceEEEEccCCCEEEEE------eCC--e-
Q 001403 893 LVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET--H- 950 (1084)
Q Consensus 893 l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~~~~s~dg~~la~~------~d~--~- 950 (1084)
+++.=.+ ..|..++.. |.......+...- ...........++++|||+.|.+. .|+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~ 177 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRAN 177 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcccc
Confidence 8887666 778888877 4432221111110 112233578999999999955442 222 1
Q ss_pred ------EEE--EEcCC-cceeeEe--ecC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcC
Q 001403 951 ------LAI--YEAEE-LTCLKQW--FPI------SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1000 (1084)
Q Consensus 951 ------i~v--wd~~~-~~~~~~~--~~~------h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~ 1000 (1084)
+++ ||..+ ++...++ ... ....|+.+.+-+|+++|+.-= ....++|+.+.
T Consensus 178 ~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 178 PDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred cccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45444 3222221 111 357889999999999776321 23456666544
No 459
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=89.59 E-value=18 Score=35.80 Aligned_cols=146 Identities=13% Similarity=0.160 Sum_probs=87.0
Q ss_pred cEEEEEeCCCeEEEEEcCC--ceeeeeecccccCEEEEEEcCCCCEEEEEeCCC------cEEE---EeCCCCceeeeee
Q 001403 849 NVIAIGMDDSTILIYNARS--SEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS 917 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~--~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg------~I~i---wd~~~~~~~~~~~ 917 (1084)
..|..+...+.|.+|++.. .+.+.++.. -+.|..+.++..|++|+|-=.+. .+|+ |+....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~- 106 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVR- 106 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEE-
Confidence 4554456677899999983 455666664 37899999999999999864322 4555 444421111100
Q ss_pred eecCCCC------------------ccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce-ee-----Ee---ecCC-
Q 001403 918 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LK-----QW---FPIS- 969 (1084)
Q Consensus 918 ~~~~~~~------------------~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~-~~-----~~---~~~h- 969 (1084)
....|| ......+.+++..|-..-|++|.++++.+|.+..... .. .+ ...|
T Consensus 107 -vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~ 185 (215)
T PF14761_consen 107 -VRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI 185 (215)
T ss_pred -EEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence 000110 0112367888888887778889999999998864433 11 00 0011
Q ss_pred -CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 970 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 970 -~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+-....++|. +.|+|..+ +-.+++..+.
T Consensus 186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 2334555655 45888765 5577777653
No 460
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=89.50 E-value=32 Score=37.62 Aligned_cols=112 Identities=9% Similarity=-0.021 Sum_probs=55.4
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEEe------CCeEEEEEc
Q 001403 889 ALNILVSSGGDA-----QIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH------ETHLAIYEA 956 (1084)
Q Consensus 889 d~~~l~s~s~dg-----~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------d~~i~vwd~ 956 (1084)
++.+++.|+.++ .+..+|+.+.... ....+..+... .-...+..-++++.+.|. ...+..||.
T Consensus 72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~-----~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~ 146 (323)
T TIGR03548 72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFT-----FENGSACYKDGTLYVGGGNRNGKPSNKSYLFNL 146 (323)
T ss_pred CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcC-----ccCceEEEECCEEEEEeCcCCCccCceEEEEcC
Confidence 567777777653 4666777664421 00111111111 011122223566666642 135888888
Q ss_pred CCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCc----EEEEEcCCCcee
Q 001403 957 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT----LSIHEASNLEVQ 1005 (1084)
Q Consensus 957 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~----i~vwd~~~~~~~ 1005 (1084)
.+.+-..........+....+...+++..+.|+.++. +.+||..+.+..
T Consensus 147 ~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 147 ETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 7654322110011122223334556777788876643 567888887654
No 461
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.50 E-value=19 Score=44.96 Aligned_cols=153 Identities=17% Similarity=0.180 Sum_probs=96.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc--------CCCCEEEEEeCCCcEEEEeCCCCceeeeee-
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS--------DALNILVSSGGDAQIFVWDVDGWGIQTCRS- 917 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s--------pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~- 917 (1084)
=++..+ +-|+.+.+|+.+++.....+.+-+..|..+..- |.=++|...+.--.|.++-+.-.+......
T Consensus 90 I~RaWi--TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~ 167 (1311)
T KOG1900|consen 90 IGRAWI--TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSI 167 (1311)
T ss_pred hcceEE--EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccc
Confidence 344444 347789999999988788888877777776543 333455555555667777665433211110
Q ss_pred eecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEE--EEcCCc---c-ee----------------eEeecCCCCCEEE
Q 001403 918 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQ 975 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~v--wd~~~~---~-~~----------------~~~~~~h~~~v~~ 975 (1084)
+...-........|.++....+|+.+.+|.||.|+= |....| + |. ..+...+..+|..
T Consensus 168 f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~q 247 (1311)
T KOG1900|consen 168 FNTSFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQ 247 (1311)
T ss_pred cccceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCccee
Confidence 000000001123588999999999999999995442 222221 1 10 1112245779999
Q ss_pred EEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 976 ATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 976 l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
++....-..|.+-++.|+|++|++.+
T Consensus 248 i~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eEeccccceeeeeccCceEEEEEccC
Confidence 99988888899999999999999998
No 462
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=89.43 E-value=50 Score=38.78 Aligned_cols=244 Identities=14% Similarity=0.175 Sum_probs=111.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCc-----cccce-eeeecCCCCCeEEEEEcC-----CCCEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-----SMLFK-TALVRDPGVSVNRVVWSP-----DGSLLG 404 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-----~~~~~-~~~~~~h~~~V~~v~fsp-----dg~~la 404 (1084)
.-..++..|.|+.+|.+.++ +.+.|+-++.. ..... ...+ .....|..++|-. +...+|
T Consensus 45 ~G~~l~vDP~~R~i~v~a~e---------~~~~v~~l~~~~~~~~~~~~~~~~pi-~s~~~i~~~~FL~~~~~~~~p~la 114 (504)
T PF10433_consen 45 PGQYLAVDPSGRCIAVSAYE---------GNFLVYPLNRSLDSDIAFSPHINSPI-KSEGNILDMCFLHPSVGYDNPTLA 114 (504)
T ss_dssp T--EEEE-TTSSEEEEEEBT---------TEEEEEE-SS----T-TT---EEEE---S-SEEEEEEEES---S-SS-EEE
T ss_pred CCcEEEECCcCCEEEEEecC---------CeEEEEEecccccccccccccccccc-cCCceEEEEEEEecccCCCCceEE
Confidence 45579999999999999888 89999998771 00000 0011 1256778888875 344555
Q ss_pred EEe--CCC--EEEEEEccCCccccc---eeeee-----cccccEeEEEee-cCCCcEEEEEEeCCCcEEEEECCC--C-c
Q 001403 405 VAY--SKH--IVQLYAYHGGSDARQ---QLEID-----AHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVT--G-S 468 (1084)
Q Consensus 405 s~~--~dg--~v~iwd~~~~~~~~~---~~~l~-----~h~~~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~--g-~ 468 (1084)
.-. ..+ .+..+++.....+.. ..... .+..+..-+..- |.|- +++ ++ ++.+.+-+... + .
T Consensus 115 ~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~gg--llV-~~-~~~i~y~~~~~~~~~~ 190 (504)
T PF10433_consen 115 ILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPGG--LLV-GG-ENIIIYKNHLIGSGDY 190 (504)
T ss_dssp EEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT-S--EEE-EE-SSEEEEEE------TT
T ss_pred EEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCcE--EEE-EC-CEEEEEeccccccccc
Confidence 532 222 244444332221110 00111 111222222221 2233 344 33 33333333221 1 1
Q ss_pred eeeEecc----CCCcEEEEee-----cccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCC-CCeEEEEEEcCCC-CE
Q 001403 469 RTYSFEG----HGAPVYSLCP-----HAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAP-GLGCTRMAYSANG-RR 535 (1084)
Q Consensus 469 ~~~~~~~----h~~~v~~~~~-----~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~-~~~i~~~~~s~d~-~~ 535 (1084)
....+.. ...-+.+... ....++..++.+..+|.+....+..... ....-+. .....++++..+| .+
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~ 270 (504)
T PF10433_consen 191 SFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDY 270 (504)
T ss_dssp EEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--E
T ss_pred ccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEE
Confidence 1122221 1222333322 1245667899999999998877765442 1222122 3344566666655 46
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC----CC------EEEEEE---CCCcEEEEEC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA----KD------QILAAG---DDHVIKIWDM 599 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~----~~------~l~~~~---~dg~i~iwd~ 599 (1084)
+++++.. |++.+..|....-+.+..+.... +|..+++.+. .. .+++++ .+|.+++..-
T Consensus 271 lf~gs~~--gds~l~~~~~~~l~~~~~~~N~~----Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 271 LFVGSEF--GDSQLLQISLSNLEVLDSLPNWG----PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp EEEEESS--S-EEEEEEESESEEEEEEE--------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred EEEEEec--CCcEEEEEeCCCcEEEEeccCcC----CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Confidence 6666653 46778888866666777776544 8888877532 22 566654 5678887753
No 463
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=89.36 E-value=17 Score=40.30 Aligned_cols=150 Identities=9% Similarity=0.085 Sum_probs=90.3
Q ss_pred EeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccC------CCcEEEEEecCCeEEEEECCCCCc
Q 001403 440 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 440 ~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~------~~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
-...+...+++..|+....+.--|++.|+.+.++.-|...| +.|.|.. +.+.|+-.|..+..+ .|.+....
T Consensus 473 mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS~~svFr-IDPR~~gN 549 (776)
T COG5167 473 MLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLSDYSVFR-IDPRARGN 549 (776)
T ss_pred eeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeecccceEE-ecccccCC
Confidence 33334444466677777788888999999999998887764 3333321 223455445444443 45544433
Q ss_pred eEeecCCCCeEEEEEE----cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE
Q 001403 514 RVDYDAPGLGCTRMAY----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 514 ~~~~~~~~~~i~~~~~----s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.........-.+.-.| ....-++++++..+ -|++||.-..+....+++.. ..|..+..+.+|+++++.+
T Consensus 550 Ki~v~esKdY~tKn~Fss~~tTesGyIa~as~kG----DirLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 550 KIKVVESKDYKTKNKFSSGMTTESGYIAAASRKG----DIRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILATC 622 (776)
T ss_pred ceeeeeehhccccccccccccccCceEEEecCCC----ceeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEEee
Confidence 2222211111222222 23455788887633 39999976555555566655 7899999999999998877
Q ss_pred CCCcEEEEECC
Q 001403 590 DDHVIKIWDMN 600 (1084)
Q Consensus 590 ~dg~i~iwd~~ 600 (1084)
. ..+.+-|+.
T Consensus 623 k-~yllL~d~~ 632 (776)
T COG5167 623 K-NYLLLTDVP 632 (776)
T ss_pred c-ceEEEEecc
Confidence 5 455555543
No 464
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=89.27 E-value=67 Score=39.95 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=102.0
Q ss_pred CCCCccEEEec---C----CCCEEEEEeCCeEEEEEcCCc---------------eeEEEEcC---CCCCeEEEEEcCCC
Q 001403 793 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD 847 (1084)
Q Consensus 793 ~~~~v~~l~~s---~----dg~~l~~~sdg~i~vwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d 847 (1084)
...+|..|+|+ . ..++|++-....+.|+...-. ..+.++.. .......++|+|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 46678888887 2 235777777777777772211 12223321 12345677777766
Q ss_pred CcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 848 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
.+.||+.+..|...||++..+... +.. .+-+.....|.| +.|... +
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-----------~~~~~~~~~gsi-~~d~~e--------------~--- 203 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-----------NLRLSRNISGSI-IFDPEE--------------L--- 203 (765)
T ss_pred cceEEEEeccCcEEEEEecccccc-----CCc-----------ceeeccCCCccc-cCCCcc--------------c---
Confidence 677777777777777777211100 000 111111222323 222221 0
Q ss_pred CCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-EeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCC
Q 001403 928 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 928 ~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
..-..+.|.++...|++.....+.++|+.+..... .........|..+.-+++. .+++.- +...|...++...
T Consensus 204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~ 278 (765)
T PF10214_consen 204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS 278 (765)
T ss_pred -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence 13457889999999999999999999999877644 2233346789999988872 222222 3357888888874
No 465
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.98 E-value=1.4 Score=30.60 Aligned_cols=32 Identities=19% Similarity=0.354 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCC--cEEEEEeCCCeEEEEEcCC
Q 001403 836 PTATSLAFNPHDN--NVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 836 ~~i~~l~~s~~d~--~~la~g~~dg~i~iwd~~~ 867 (1084)
+.+.++.|||..+ .+|+..-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998555 6999999999999999985
No 466
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=88.89 E-value=44 Score=37.42 Aligned_cols=150 Identities=10% Similarity=-0.005 Sum_probs=82.5
Q ss_pred EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001403 881 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 881 V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~ 960 (1084)
...+..++||.+++.+..-..++-||-.... ...+.... ...++.+.|.+++.+++++..|.+.. ....++
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~~~---W~~~~~~~-----~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~ 311 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQPY---WQPHNRAS-----ARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGL 311 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCCcc---eEEecCCC-----ccceeeeeEcCCCCEEEEeCCceEEE-ecCCCC
Confidence 4456677888777765443333334433200 01111111 12578999999999999987777544 344443
Q ss_pred -----eeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCC
Q 001403 961 -----CLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLK 1034 (1084)
Q Consensus 961 -----~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d 1034 (1084)
........ ....+.++.|.+|+..+++ +.+|.+.... +.|+--.+......++. ..| .+.|.+
T Consensus 312 ~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~-G~~G~v~~s~-D~G~tW~~~~~~~~~~~-----~ly--~v~f~~-- 380 (398)
T PLN00033 312 TEEDFDFEEADIKSRGFGILDVGYRSKKEAWAA-GGSGILLRST-DGGKSWKRDKGADNIAA-----NLY--SVKFFD-- 380 (398)
T ss_pred cccccceeecccCCCCcceEEEEEcCCCcEEEE-ECCCcEEEeC-CCCcceeEccccCCCCc-----cee--EEEEcC--
Confidence 12221111 1245899999988876665 5788777664 44433222211111122 244 566764
Q ss_pred CCEEEEEeCCCcEEEE
Q 001403 1035 PTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 1035 ~~~l~~~~~dg~v~vw 1050 (1084)
++...+.+.+|.|.-|
T Consensus 381 ~~~g~~~G~~G~il~~ 396 (398)
T PLN00033 381 DKKGFVLGNDGVLLRY 396 (398)
T ss_pred CCceEEEeCCcEEEEe
Confidence 3566667788887765
No 467
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=88.72 E-value=19 Score=36.87 Aligned_cols=147 Identities=11% Similarity=0.060 Sum_probs=79.0
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC---ceEeeeeeccccccCceEEEEEcCC
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~---~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
+||+.+.+...........+.+-++-+||+++.+++. .+|...+++++..+ ..........-.....--++..-||
T Consensus 50 ~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~D 128 (243)
T PF07250_consen 50 EYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPD 128 (243)
T ss_pred EEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECCC
Confidence 5777665543332333334555567789988888774 34566688887654 1111111000000123334556689
Q ss_pred CCEEEEEECCC-cEEEEECCC--CeEEEE--Ec---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 582 KDQILAAGDDH-VIKIWDMNK--VQLLTT--ID---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 582 ~~~l~~~~~dg-~i~iwd~~~--~~~~~~--~~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
|+.|+.|+... +..+|.... ...... +. ......--..+...|+|++++.+..+ -.|||..+++.+..+.
T Consensus 129 G~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP 206 (243)
T PF07250_consen 129 GRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP 206 (243)
T ss_pred CCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence 99999988664 344555421 111111 11 01111123467778999999888764 4566888776655554
Q ss_pred c
Q 001403 654 V 654 (1084)
Q Consensus 654 ~ 654 (1084)
.
T Consensus 207 ~ 207 (243)
T PF07250_consen 207 D 207 (243)
T ss_pred C
Confidence 3
No 468
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.72 E-value=42 Score=36.90 Aligned_cols=141 Identities=14% Similarity=0.097 Sum_probs=82.6
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee---
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT--- 470 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~--- 470 (1084)
+-|....+.| .+...|.+.=|.+.....-.....-....++|.++.||+|.+ .++.--.|++|.+.+....+..
T Consensus 28 vFfDDaNkql-favrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnk--ilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 28 VFFDDANKQL-FAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNK--ILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred eeeccCcceE-EEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcc--eEEEEecCceEEEEecCCCchhhHH
Confidence 4444333333 333444466666554322111111123456999999999999 8999999999999997433322
Q ss_pred -eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 471 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 471 -~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
++.+.....|...+|..+ .-++..+..| +.+|....... ....+.+...|.-..|.++.+.++.++.
T Consensus 105 ~~~ck~k~~~IlGF~W~~s---~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS---TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred HHHhccCcceeEEEEEecC---eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 223333445777777543 3344444444 45555544332 3334556667888889999888776653
No 469
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=88.65 E-value=1.6 Score=30.43 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=26.6
Q ss_pred CCeEEEEEcCC-C--CEEEEEeCCCEEEEEEccCC
Q 001403 389 VSVNRVVWSPD-G--SLLGVAYSKHIVQLYAYHGG 420 (1084)
Q Consensus 389 ~~V~~v~fspd-g--~~las~~~dg~v~iwd~~~~ 420 (1084)
+.|.++.|||+ + .+||..-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 36889999984 4 58998888899999999853
No 470
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=88.63 E-value=46 Score=37.30 Aligned_cols=40 Identities=10% Similarity=0.042 Sum_probs=19.8
Q ss_pred EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 594 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
+.+||..+.+....-..... .....+..-+++++++|+..
T Consensus 314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~ 353 (376)
T PRK14131 314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET 353 (376)
T ss_pred hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence 45788877654432222111 11223344456677777653
No 471
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=88.26 E-value=57 Score=37.88 Aligned_cols=193 Identities=12% Similarity=0.146 Sum_probs=88.8
Q ss_pred EEEEEE---eCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCe-
Q 001403 448 ISVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG- 523 (1084)
Q Consensus 448 l~l~s~---~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~- 523 (1084)
+++++. ...+...+.| ..|.....+......... |...++|.+++... +.+..+|+. ++...........
T Consensus 116 l~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~-G~v~~~~~l~~~~~ 189 (477)
T PF05935_consen 116 LYFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLL-GKVIWEYDLPGGYY 189 (477)
T ss_dssp EEEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE
T ss_pred EEEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCC-CCEEEeeecCCccc
Confidence 355555 2345566666 456555444322111111 22245666665544 677777775 3333333333321
Q ss_pred --EEEEEEcCCCCEEEEEee---------CCCCCeeEEEecCCCceEeeeeecccc----------------------c-
Q 001403 524 --CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL----------------------Q- 569 (1084)
Q Consensus 524 --i~~~~~s~d~~~l~~~~~---------~~~~~~~i~~wd~~~~~~~~~~~~~~~----------------------~- 569 (1084)
=..+...|+|++|+.+.. ...-.-.|..+| .+|+.+..+..... .
T Consensus 190 ~~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~ 268 (477)
T PF05935_consen 190 DFHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGR 268 (477)
T ss_dssp -B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTS
T ss_pred ccccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCC
Confidence 234667799999988772 111122366667 77777655432110 0
Q ss_pred -cCceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCc-ceEEEec------------------CCCE
Q 001403 570 -HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPEN-PRICFNK------------------NGTL 628 (1084)
Q Consensus 570 -~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v-~~v~~s~------------------~~~~ 628 (1084)
=-.+.++.+.+....|+..+. -..|...|..+++....+..+.....- ....+.| -|++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~~w~~~~~~~ll~~vd~~G~~~~~~~~~~~~~~gQH 348 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPGGWNGTYQDYLLTPVDSNGNPIDCGDGDFDWFWGQH 348 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-STT--TTTGGGB-EEB-TTS-B-EBSSSS----SS-E
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCCCCCcccchheeeeeccCCceeeccCCCCccccccc
Confidence 024788999885555555554 558999999999998888665432211 1111111 2455
Q ss_pred EEEEECCC---eEEEEEcCCCC
Q 001403 629 LAVIANEN---RIKILETPESN 647 (1084)
Q Consensus 629 l~~~~~dg---~i~iwd~~~~~ 647 (1084)
-+.-..+| .|.++|-...+
T Consensus 349 ~~~~~~~g~~~~l~vFDNg~~r 370 (477)
T PF05935_consen 349 TAHLIPDGPQGNLLVFDNGNGR 370 (477)
T ss_dssp EEEE-TTS---SEEEEE--TTG
T ss_pred ceEEcCCCCeEEEEEEECCCCC
Confidence 56666666 78888766553
No 472
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=87.76 E-value=36 Score=44.04 Aligned_cols=135 Identities=13% Similarity=0.066 Sum_probs=81.3
Q ss_pred EEeCCCeEEEEEcCCce-------eeeeec---------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 853 IGMDDSTILIYNARSSE-------VISKLE---------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 853 ~g~~dg~i~iwd~~~~~-------~~~~l~---------~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
+|-.||.|.-||-.+.. -+..|+ -..+.|..+.+++...-++-+. +..+.+=- .........
T Consensus 618 v~L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~~~~~~~~g~-~~~~a~~~-~r~~~e~G~ 695 (1774)
T PF11725_consen 618 VGLQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQEHPSIAHGD-NNVFALPQ-RRNKVELGD 695 (1774)
T ss_pred eeeccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeecccCCCccccCC-Cccccccc-ccCCCCCCc
Confidence 35568999999976421 111111 1346677777777665555432 22122100 111111222
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 996 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~v 996 (1084)
.+...+ . ..|+.++.-.+.++++....|.+.... ..+..+..-..+-.+.|..++......+.+ -..+|.++-
T Consensus 696 ~l~Gl~-~----~~i~a~Avv~~~~fvald~qg~lt~h~-k~g~p~~l~~~gl~G~ik~l~lD~~~nL~A-lt~~G~Lf~ 768 (1774)
T PF11725_consen 696 ALEGLE-D----RVITAFAVVNDNKFVALDDQGDLTAHQ-KPGRPVPLSRPGLSGEIKDLALDEKQNLYA-LTSTGELFR 768 (1774)
T ss_pred cccCCC-c----CcceeEEEEcCCceEEeccCCcccccc-CCCCCccCCCCCCCcchhheeeccccceeE-ecCCCceee
Confidence 344443 1 358999999999999998889999988 667755544445578999999988765555 456777654
No 473
>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins. Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.
Probab=87.06 E-value=49 Score=38.39 Aligned_cols=147 Identities=13% Similarity=0.099 Sum_probs=74.2
Q ss_pred CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 856 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
..+...++|.. |..+..+.........+.+.++|.+++..+ ..++.+|+... ......+.. +... .-..+.
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~-v~~~~~l~~--~~~~---~HHD~~ 196 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGK-VIWEYDLPG--GYYD---FHHDID 196 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--T--TEE----B-S-EE
T ss_pred CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCC-EEEeeecCC--cccc---cccccE
Confidence 34566666643 555555443222221266778999888665 77888888753 222222221 1100 012577
Q ss_pred EccCCCEEEEEe--------------CCeEEEEEcCCcceeeEeecC-C-------------------------CCCEEE
Q 001403 936 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ 975 (1084)
Q Consensus 936 ~s~dg~~la~~~--------------d~~i~vwd~~~~~~~~~~~~~-h-------------------------~~~v~~ 975 (1084)
.-|+|.+|+.+. +..|..+| .+|+.+..+... | =-.+.+
T Consensus 197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns 275 (477)
T PF05935_consen 197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS 275 (477)
T ss_dssp E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence 889999988754 23466677 777776664221 1 135788
Q ss_pred EEEcc-CCCEEEEEeCCCcEEEEEcCCCceeEEecccc
Q 001403 976 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1012 (1084)
Q Consensus 976 l~fs~-dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1012 (1084)
+.+.+ ++..|+++=.-..|...|..++++...+....
T Consensus 276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~ 313 (477)
T PF05935_consen 276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG 313 (477)
T ss_dssp EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence 99988 55555554334488889999999988777543
No 474
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.79 E-value=2.6 Score=42.70 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=52.1
Q ss_pred EcCCCCEEEEEeCCCcEEEEeCCCCceeeee-e-eecCCCC----ccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 886 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGV----MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 886 ~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~~~~----~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
+..++.+|+..+.+|.+++||+.+++..... . ....... ......|..+.++.+|.-+++-++|..+.|+..-+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 4457889999999999999999997644322 1 1111110 02234789999999999988877888999987633
No 475
>PLN02153 epithiospecifier protein
Probab=86.60 E-value=56 Score=36.04 Aligned_cols=113 Identities=7% Similarity=0.018 Sum_probs=53.8
Q ss_pred CCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC-----------CeE
Q 001403 889 ALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------THL 951 (1084)
Q Consensus 889 d~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----------~~i 951 (1084)
++++++.||.+ ..+.+||..+.+-.. +................+..-++++.+.| .+ ..+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v 161 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNEWTF---LTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTI 161 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCEEEE---eccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceE
Confidence 56777777754 347788887754222 21110000000112223334456665553 22 247
Q ss_pred EEEEcCCcceeeEeecC--CCCCE-EEEEEccCCCEEEEEeCC-------------CcEEEEEcCCCcee
Q 001403 952 AIYEAEELTCLKQWFPI--SSVPI-SQATFSCDCRMVFTSFVD-------------GTLSIHEASNLEVQ 1005 (1084)
Q Consensus 952 ~vwd~~~~~~~~~~~~~--h~~~v-~~l~fs~dg~~l~t~~~d-------------g~i~vwd~~~~~~~ 1005 (1084)
.+||..+.+=......+ ...+. .+++ ..+++.++.++.+ ..+.+||..+.+..
T Consensus 162 ~~yd~~~~~W~~l~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~ 230 (341)
T PLN02153 162 EAYNIADGKWVQLPDPGENFEKRGGAGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWT 230 (341)
T ss_pred EEEECCCCeEeeCCCCCCCCCCCCcceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEE
Confidence 78888765432211100 01111 1122 2356666655432 45888898887665
No 476
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=86.24 E-value=4.7 Score=40.89 Aligned_cols=75 Identities=9% Similarity=-0.062 Sum_probs=56.9
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeEe------ec-------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.+..++.+|++ ..+|.+++||+.+++.+... .. .....|..+.++.+|.-|++-+ +|..+.|+.
T Consensus 16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence 345567777766 79999999999998876542 21 2457889999999998887764 689999999
Q ss_pred CCCceeEEec
Q 001403 1000 SNLEVQCRIL 1009 (1084)
Q Consensus 1000 ~~~~~~~~~~ 1009 (1084)
+-+..+....
T Consensus 95 ~L~~W~~vsd 104 (219)
T PF07569_consen 95 DLGCWIRVSD 104 (219)
T ss_pred ccceeEEecc
Confidence 9887765444
No 477
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=86.11 E-value=11 Score=36.56 Aligned_cols=107 Identities=13% Similarity=0.050 Sum_probs=64.3
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeEEEEEcC
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+|.++.+.+. -|...|++||+.+|+.+..-.-.. ..+..--...-+..+.. .-.+|.-.++|.++-+.+..+..
T Consensus 55 ~g~i~esTG~--yg~S~ir~~~L~~gq~~~s~~l~~---~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y 129 (262)
T COG3823 55 DGHILESTGL--YGFSKIRVSDLTTGQEIFSEKLAP---DTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSY 129 (262)
T ss_pred CCEEEEeccc--cccceeEEEeccCceEEEEeecCC---ccccccceeeccceEEEEEeccceeEEEChHHhhhhccccc
Confidence 4555555443 446779999999998876554331 11211111222344433 44688899999999888887765
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
.+.. -....|+..|+.+.....++.-|.++-..
T Consensus 130 ~GeG-----WgLt~d~~~LimsdGsatL~frdP~tfa~ 162 (262)
T COG3823 130 EGEG-----WGLTSDDKNLIMSDGSATLQFRDPKTFAE 162 (262)
T ss_pred CCcc-----eeeecCCcceEeeCCceEEEecCHHHhhh
Confidence 5442 23344666677766666677666655433
No 478
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.09 E-value=12 Score=47.21 Aligned_cols=69 Identities=10% Similarity=0.133 Sum_probs=45.4
Q ss_pred CceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001403 930 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
.+.+..+...+..+.....+.+-+|+.........+...+. ..+.++..++++..||.+..||...|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~ 268 (993)
T KOG1983|consen 200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSGKL 268 (993)
T ss_pred ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCCce
Confidence 34445555555555555566666666554444443332221 1288999999999999999999999866
No 479
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=85.92 E-value=20 Score=39.79 Aligned_cols=142 Identities=15% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC-------CCcEEEEEeCCCeEEEEEcCC-ceeeee
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNARS-SEVISK 873 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~la~g~~dg~i~iwd~~~-~~~~~~ 873 (1084)
.|...|...+ ...+.-.|++.|+.+.....|... -+.|.|. +.+.|+ |-.+..|.-.|..- |..+..
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v 553 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV 553 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence 3444444443 366888888999999888876654 4667662 223444 55555555555543 322221
Q ss_pred ecccccCEEEEEEc----CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 874 LEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 874 l~~h~~~V~~l~~s----pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
.. ....++.-.|| -...++|.+|.-|-|++||--....++ .+. .....|..+..+.+|+++++....
T Consensus 554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP------~lG~aIk~idvta~Gk~ilaTCk~ 624 (776)
T COG5167 554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALP------GLGDAIKHIDVTANGKHILATCKN 624 (776)
T ss_pred ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCc------ccccceeeeEeecCCcEEEEeecc
Confidence 11 12223333333 245799999999999999976522111 111 122368899999999999998888
Q ss_pred eEEEEEcC
Q 001403 950 HLAIYEAE 957 (1084)
Q Consensus 950 ~i~vwd~~ 957 (1084)
.+.+-|+.
T Consensus 625 yllL~d~~ 632 (776)
T COG5167 625 YLLLTDVP 632 (776)
T ss_pred eEEEEecc
Confidence 99888874
No 480
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=84.99 E-value=51 Score=34.16 Aligned_cols=72 Identities=13% Similarity=0.077 Sum_probs=44.9
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+-+..+.++ +++...+..+.-++|.|+.+...-..+..-... -..-.+.-.|++..++.-+.-+.+.|+.+.
T Consensus 87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~--gyaygv~vsGn~aYVadlddgfLivdvsdp 158 (370)
T COG5276 87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD--GYAYGVYVSGNYAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCC--ceEEEEEecCCEEEEeeccCcEEEEECCCC
Confidence 345566665 457788888889999999875433322111000 122333445888888886777888888765
No 481
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=84.97 E-value=66 Score=35.42 Aligned_cols=188 Identities=13% Similarity=0.142 Sum_probs=102.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec--ccCCCcE--EEEEe-cC---CeEEEEECCCCCceE-eecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~--l~s~s-~d---g~i~iwd~~~~~~~~-~~~~ 519 (1084)
+++...+++-+.+||+ .|+.++.+. .+.++.+... ..-+|.. |+.++ .+ ..|++|.++...... .+..
T Consensus 70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~ 146 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD 146 (381)
T ss_dssp EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence 6777777888999995 566666664 2334433221 1112222 33443 32 469999887533322 2221
Q ss_pred -------CCCeEEEEEEc--C-CCCEEEEEeeCCCCCeeEEEecCC---Cc----eEeeeeeccccccCceEEEEEcCCC
Q 001403 520 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNES---EG----AIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 520 -------~~~~i~~~~~s--~-d~~~l~~~~~~~~~~~~i~~wd~~---~~----~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
....++.+|+. + +|.+.+.... + ++.+..|.+. .+ +.++.|.... .+..|......
T Consensus 147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s----Q~EGCVVDDe~ 219 (381)
T PF02333_consen 147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVGS----QPEGCVVDDET 219 (381)
T ss_dssp TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-SS-----EEEEEEETTT
T ss_pred CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCCC----cceEEEEeccc
Confidence 11246667763 3 4665555443 2 3446555443 33 4577776543 78889999888
Q ss_pred CEEEEEECCCcEEEEECCC-----CeEEEEEcCCCCCCCcceEEEec--CCC-EEEEEE-CCCeEEEEEcCCC
Q 001403 583 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAVIA-NENRIKILETPES 646 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~~~-~l~~~~-~dg~i~iwd~~~~ 646 (1084)
.+|+.+-++.-|.-|+.+. +..+.......-...+-.+++-. +++ +|++.+ .+++..+|+....
T Consensus 220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999999998888888762 23333333322334566777643 433 444444 4778999998753
No 482
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=84.72 E-value=23 Score=40.15 Aligned_cols=112 Identities=11% Similarity=0.068 Sum_probs=61.2
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC------CEEEEE--e---
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H--- 947 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg------~~la~~--~--- 947 (1084)
...+.|+|.|||++|++--..|.|++++-.++.......+..... ....+....++|+|+- .+|.++ .
T Consensus 30 ~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~ 108 (454)
T TIGR03606 30 NKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNG 108 (454)
T ss_pred CCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEeccCC
Confidence 457889999999888876557999999866543221111111100 0012468899999884 344442 1
Q ss_pred ------CCeEEEEEcCCc--ce--eeEeecCC----CCCEEEEEEccCCCEEEEEeCC
Q 001403 948 ------ETHLAIYEAEEL--TC--LKQWFPIS----SVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 948 ------d~~i~vwd~~~~--~~--~~~~~~~h----~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
...|.-|.+... .. ...++.+- ...-..|+|.|||.++++.+..
T Consensus 109 ~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 109 DKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred CCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 223444544321 10 11111110 1124467899999877766654
No 483
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.63 E-value=19 Score=44.97 Aligned_cols=171 Identities=13% Similarity=0.206 Sum_probs=99.7
Q ss_pred ccCCCccceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEE-
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV- 395 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~- 395 (1084)
.+..+|...+.... |...-..+-+-|.= +.=++ - |+.+.+|+.++...... +.+-+..|..|.
T Consensus 63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~RaWiT--i---------Dn~L~lWny~~~~e~~~---~d~~shtIl~V~L 127 (1311)
T KOG1900|consen 63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGRAWIT--I---------DNNLFLWNYESDNELAE---YDGLSHTILKVGL 127 (1311)
T ss_pred ccccCCHHHHHHhc-CcceeeeeccchhhcceEEE--e---------CCeEEEEEcCCCCcccc---ccchhhhheeeee
Confidence 44667766555555 44344445555532 22222 1 38899999988444322 444555565555
Q ss_pred -------EcCCCCEEEEEeCCCEEEEEEccCCccccce------eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 396 -------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 396 -------fspdg~~las~~~dg~v~iwd~~~~~~~~~~------~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
|-|.=+++.+...--.|.|+-+.-.+..... ..+......|+|+....+|+ +++ +|.|| .+|
T Consensus 128 vkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~dg--~ly 202 (1311)
T KOG1900|consen 128 VKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGRDG--NLY 202 (1311)
T ss_pred ecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eecCC--CEE
Confidence 3444456666655566777765433221111 12223355789999888888 555 55566 444
Q ss_pred EC----CCC---c-e----------------eeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 463 DA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 463 d~----~~g---~-~----------------~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+ ..| + + +-.+. .+.++|..+.+. ..-..+++-+..|+|.+|++..
T Consensus 203 El~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID--~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 203 ELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID--NSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec--cccceeeeeccCceEEEEEccC
Confidence 33 111 1 1 11223 567899999984 4446899999999999999875
No 484
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=84.47 E-value=24 Score=39.35 Aligned_cols=38 Identities=13% Similarity=0.280 Sum_probs=30.0
Q ss_pred ceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 572 SVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 572 ~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
.+..++|+|+. .++..-+.|.+||+||......+....
T Consensus 167 tl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylqp 207 (741)
T KOG4460|consen 167 TLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQP 207 (741)
T ss_pred eeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhccC
Confidence 46677899875 788888999999999998776664443
No 485
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=84.44 E-value=0.18 Score=54.67 Aligned_cols=144 Identities=18% Similarity=0.177 Sum_probs=95.3
Q ss_pred EEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEE
Q 001403 731 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF 810 (1084)
Q Consensus 731 ~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~ 810 (1084)
...+.+.+..++.++.+..+..||-.... .... ........+++..+|..++
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq~-----------------------~le~-----n~tg~aldm~wDkegdvla 90 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQV-----------------------ILEL-----NPTGKALDMAWDKEGDVLA 90 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcce-----------------------eccc-----CCchhHhhhhhccccchhh
Confidence 45566777778888888777777633221 1110 1334455677877887776
Q ss_pred EEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 811 SAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 811 ~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
... .+.+.+||+.+.....--.+....-.-+.|++ +...++.|...|.+.|++..+.+.+...-.|...++++++.+
T Consensus 91 vlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~l 169 (615)
T KOG2247|consen 91 VLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTL 169 (615)
T ss_pred hhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEecc
Confidence 654 58899999975432221111111122278999 889999999999999999888776665555999999999998
Q ss_pred CCCEEEEEeCCCcEEE
Q 001403 889 ALNILVSSGGDAQIFV 904 (1084)
Q Consensus 889 d~~~l~s~s~dg~I~i 904 (1084)
.+ +.+.++.|..+.+
T Consensus 170 Ed-~vil~dcd~~L~v 184 (615)
T KOG2247|consen 170 ED-YVILCDCDNTLSV 184 (615)
T ss_pred cc-eeeecCcHHHHHH
Confidence 75 4455555655443
No 486
>PLN02193 nitrile-specifier protein
Probab=84.28 E-value=89 Score=36.29 Aligned_cols=154 Identities=9% Similarity=-0.007 Sum_probs=72.7
Q ss_pred EEEEEeCC-----CcEEEEECCCCceee--EeccCCCcE--EEEeecccCCCcEEEEEecCC-----eEEEEECCCCCce
Q 001403 449 SVITCGDD-----KTIKVWDAVTGSRTY--SFEGHGAPV--YSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGAR 514 (1084)
Q Consensus 449 ~l~s~~~d-----~~i~vwd~~~g~~~~--~~~~h~~~v--~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~~~~ 514 (1084)
+.+.|+.+ +.+.++|+.+.+-.. .+.....+. .+++. . ++++++.|+.++ .+..||+.+.+-.
T Consensus 231 lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~--~-~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 231 LYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA--D-EENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred EEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE--E-CCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 45556544 357888988764322 110001111 11221 1 345666676543 3566776553321
Q ss_pred Eeec---CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccccCceEEEEEcCCCCEEEEEE
Q 001403 515 VDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 515 ~~~~---~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.... .........+..-+++..+.++.++.....+.+||+.+.+....-.. .........++. -+++.++.|+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~--~~~~iyv~GG 385 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAA--VGKHIVIFGG 385 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEE--ECCEEEEECC
Confidence 1110 00001111111235677776664432235589999988765433211 010011122222 3456667776
Q ss_pred CC--------------CcEEEEECCCCeEEEE
Q 001403 590 DD--------------HVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 590 ~d--------------g~i~iwd~~~~~~~~~ 607 (1084)
.. ..+.+||..+.+....
T Consensus 386 ~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~ 417 (470)
T PLN02193 386 EIAMDPLAHVGPGQLTDGTFALDTETLQWERL 417 (470)
T ss_pred ccCCccccccCccceeccEEEEEcCcCEEEEc
Confidence 43 2478899988776543
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=84.06 E-value=70 Score=34.93 Aligned_cols=70 Identities=9% Similarity=-0.068 Sum_probs=35.0
Q ss_pred CCcEEEEEecC-----CeEEEEECCCCCceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 490 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 490 ~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+...+++..+.++.+......+.+||+.+.+-
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 34566666642 357777776543222111111 12222333456667777665332223367889887654
No 488
>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A ....
Probab=83.97 E-value=96 Score=36.45 Aligned_cols=80 Identities=9% Similarity=0.135 Sum_probs=47.9
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec-----cccc
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSK 879 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~-----~h~~ 879 (1084)
+..++-.....|++.+...++....... ....|.+.+.. +..++.+..++.+..+.+.......... ....
T Consensus 418 ~~~ivQVt~~~i~l~~~~~~~~~~~w~~~~~~~I~~a~~~---~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (504)
T PF10433_consen 418 DGRIVQVTPKGIRLIDLEDGKLTQEWKPPAGSIIVAASIN---DPQVLVALSGGELVYFELDDNKISVSDNDETILELDN 494 (504)
T ss_dssp TTEEEEEESSEEEEEESSSTSEEEEEE-TTS---SEEEES---SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS
T ss_pred CCeEEEEecCeEEEEECCCCeEEEEEeCCCCCeEEEEEEC---CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCC
Confidence 5566666677799999888777766543 33456666664 3466777778899999888765542222 1457
Q ss_pred CEEEEEEcC
Q 001403 880 RVTGLVFSD 888 (1084)
Q Consensus 880 ~V~~l~~sp 888 (1084)
.|.|+...|
T Consensus 495 eis~l~i~p 503 (504)
T PF10433_consen 495 EISCLSIEP 503 (504)
T ss_dssp -EEEEE---
T ss_pred ceEEEEeCC
Confidence 788888765
No 489
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.83 E-value=85 Score=35.74 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=39.4
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeec-CCCCCeEEEEEcCCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVR-DPGVSVNRVVWSPDG 400 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~-~h~~~V~~v~fspdg 400 (1084)
+...-+..+.|+|.|||++|++-... |.|++++..+....... .+.. ........|+|+||-
T Consensus 25 va~GL~~Pw~maflPDG~llVtER~~---------G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 25 LLSGLNKPWALLWGPDNQLWVTERAT---------GKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred EECCCCCceEEEEcCCCeEEEEEecC---------CEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 44444589999999999999884212 77888876543221110 1111 135778999999884
No 490
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=83.35 E-value=78 Score=34.92 Aligned_cols=197 Identities=9% Similarity=0.034 Sum_probs=100.7
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc----CCCCE--EEEEe-CC---CcEEEEeCCCCceeeee
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS----DALNI--LVSSG-GD---AQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pd~~~--l~s~s-~d---g~I~iwd~~~~~~~~~~ 916 (1084)
...+++....++-+.+||+. |+.+..+. .+.++.+..- -+|+. |+.++ .+ .+|++|.+...... ..
T Consensus 67 ~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~ 142 (381)
T PF02333_consen 67 AKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LT 142 (381)
T ss_dssp GG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EE
T ss_pred ccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ce
Confidence 44577777778889999997 56666654 2334443332 13433 34443 32 46999988742111 11
Q ss_pred eeecCCCC-ccCCCCceEEEE--cc-CCCEEEE--EeCCeEEEEEcC---Ccc----eeeEeecCCCCCEEEEEEccCCC
Q 001403 917 SLQTPDGV-MTLAPSETHIQF--HK-DQTRFLL--VHETHLAIYEAE---ELT----CLKQWFPISSVPISQATFSCDCR 983 (1084)
Q Consensus 917 ~~~~~~~~-~~~~~~v~~~~~--s~-dg~~la~--~~d~~i~vwd~~---~~~----~~~~~~~~h~~~v~~l~fs~dg~ 983 (1084)
.+...... ......+..+|+ ++ +|.+.|. ..+|.+..|.+. .|. .++++.. .+.+..++......
T Consensus 143 ~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVVDDe~g 220 (381)
T PF02333_consen 143 DVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVVDDETG 220 (381)
T ss_dssp E-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEEETTTT
T ss_pred EcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEEecccC
Confidence 11111000 000113455555 43 5665554 467877777664 332 3444332 45788888888888
Q ss_pred EEEEEeCCCcEEEEEcCCCc-----eeEEeccccccCCCCcccceeeeEEEECCC-CCCEEEEEeCCCcEEEEcCCCC
Q 001403 984 MVFTSFVDGTLSIHEASNLE-----VQCRILSTAYLRPTTSCLHVYPHAIAAHPL-KPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~-d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
+|+.+-+|.-|.-|+.+... ++.... ...+ ...+.-+++-..++ .|.+||+.-.+++..||+....
T Consensus 221 ~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~-g~~l-----~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 221 RLYVGEEDVGIWRYDAEPEGGNDRTLVASAD-GDGL-----VADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEEEETTTEEEEEESSCCC-S--EEEEEBS-SSSB------S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred CEEEecCccEEEEEecCCCCCCcceeeeccc-cccc-----ccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 99999888766666766322 221111 1111 23366677766553 2345555556678999998543
No 491
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=82.42 E-value=77 Score=34.18 Aligned_cols=238 Identities=9% Similarity=-0.028 Sum_probs=0.0
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc--ccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV--NDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
+.-++++++.|+.+|...+. +.. ..+....+...|+++.+.+.-+.|++
T Consensus 9 ~~~~~~~lL~GTe~Gly~~~-----------------------------~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~ 59 (302)
T smart00036 9 ITCDGKWLLVGTEEGLYVLN-----------------------------ISDQPGTLEKLIGRRSVTQIWVLEENNVLLM 59 (302)
T ss_pred cccCCcEEEEEeCCceEEEE-----------------------------cccCCCCeEEecCcCceEEEEEEhhhCEEEE
Q ss_pred EeCCe--EEEEEcCCceeE---------------EEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 812 ASGGV--ISLYIVMTFKTI---------------LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 812 ~sdg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
-+++. ++++++...... ...-++.......+........++.+....+|.++...........
T Consensus 60 Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~ 139 (302)
T smart00036 60 ISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKL 139 (302)
T ss_pred EeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhh
Q ss_pred ccc--------ccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 875 EGH--------SKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 875 ~~h--------~~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
..+ ..++..+..+++ ...+..|+..+...++++.. ........-........ ...++..-+++.+
T Consensus 140 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~---~p~~i~~l~~~e~ 216 (302)
T smart00036 140 FKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSL---KPISVVQVPRDEF 216 (302)
T ss_pred hcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeeccccccccccccccccccc---CceEEEEECCCeE
Q ss_pred EEEEeCCeEEEEEcC-CcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 943 FLLVHETHLAIYEAE-ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 943 la~~~d~~i~vwd~~-~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
|++-.+..+.+=... .......+.- .....++++... ||+.-..++ |.|+++.+++++..+
T Consensus 217 Llc~~~~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~~p--yll~~~~~~-ievr~l~~~~l~q~i 278 (302)
T smart00036 217 LLCYDEFGVFVNLYGKRRSRNPILHW--EFMPESFAYHSP--YLLAFHDNG-IEIRSIKTGELLQEL 278 (302)
T ss_pred EEEECcEEEEEeCCCCccccceEEEc--CCcccEEEEECC--EEEEEcCCc-EEEEECCCCceEEEE
No 492
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=82.36 E-value=7.7 Score=37.77 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=26.4
Q ss_pred cCEEEEEEcCCC------CEEEEEeCCCcEEEEeCCC
Q 001403 879 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 879 ~~V~~l~~spd~------~~l~s~s~dg~I~iwd~~~ 909 (1084)
..|.+++|||-| -+||+.+.++.|.||.-..
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 479999999954 5788999999999998775
No 493
>PRK13613 lipoprotein LpqB; Provisional
Probab=82.02 E-value=90 Score=37.14 Aligned_cols=191 Identities=9% Similarity=0.042 Sum_probs=99.9
Q ss_pred CccEEEecCCCCEEEEEeC-C-eEEEEEcCCcee----EEEEcCCCCCeEEEEEcCCCCcEEEE-EeCCC--eEEEEEcC
Q 001403 796 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAI-GMDDS--TILIYNAR 866 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sd-g-~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~la~-g~~dg--~i~iwd~~ 866 (1084)
.+.+.+.|+++..+|...+ + .+.+..+..+.. ..... .....+.-.|.+ ++.+..+ +..++ .+++..-
T Consensus 364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g~vWtvd~~~~~~~vl~v~~~- 440 (599)
T PRK13613 364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RGDLWVVDRDPADPRLLWLLQG- 440 (599)
T ss_pred CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CCCEEEecCCCCCceEEEEEcC-
Confidence 6778999999999887763 3 466655533322 11111 123456666777 4533322 11122 2555543
Q ss_pred Cceeee-eeccccc-CEEEEEEcCCCCEEEEEeC---CCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEEEcc
Q 001403 867 SSEVIS-KLEGHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHK 938 (1084)
Q Consensus 867 ~~~~~~-~l~~h~~-~V~~l~~spd~~~l~s~s~---dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 938 (1084)
+|+... ......+ .|..+..|+||.++|.... .+.|.|=-+.. +............+. ..+.+++|..
T Consensus 441 ~G~~~~V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W~~ 516 (599)
T PRK13613 441 DGEPVEVRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSWAG 516 (599)
T ss_pred CCcEEEeeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEEcC
Confidence 444321 0112223 7999999999988876543 35566555443 221111111111111 2488999999
Q ss_pred CCCEEEEE--eC--CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEeCCCcE
Q 001403 939 DQTRFLLV--HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 994 (1084)
Q Consensus 939 dg~~la~~--~d--~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~i 994 (1084)
++.+++.+ .+ ..+.+.++..... .......-..+..++-..+.+ .|+.+..++.|
T Consensus 517 ~~sL~Vlg~~~~~~~~v~~v~vdG~~~-~~~~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v 576 (599)
T PRK13613 517 DSQLVVLGREEGGVQQARYVQVDGSTP-PASAPAAVTGVESITASEDERLPLVAGTSEDGI 576 (599)
T ss_pred CCEEEEEeccCCCCcceEEEecCCcCc-ccccccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence 99988854 23 3344444442222 211112345566777776665 45542455554
No 494
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=81.74 E-value=1.6e+02 Score=37.37 Aligned_cols=26 Identities=27% Similarity=0.219 Sum_probs=19.3
Q ss_pred ccceEEEEEEecCCCeEEEeecCCce
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVH 750 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i 750 (1084)
+-+.+.+++++|||...++-..+-.|
T Consensus 660 ~lnsp~alaVsPdg~v~IAD~gN~rI 685 (1899)
T KOG4659|consen 660 KLNSPYALAVSPDGDVIIADSGNSRI 685 (1899)
T ss_pred ccCCcceEEECCCCcEEEecCCchhh
Confidence 55678899999999977765555444
No 495
>PLN02153 epithiospecifier protein
Probab=81.74 E-value=89 Score=34.45 Aligned_cols=57 Identities=11% Similarity=0.049 Sum_probs=29.6
Q ss_pred eeEEEecCCCceEeeeee-cc-ccccCceEEEEEcCCCCEEEEEECC--------------CcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQ-GL-QLQHNSVSVVHFDTAKDQILAAGDD--------------HVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~-~~-~~~~~~v~~~~~s~~~~~l~~~~~d--------------g~i~iwd~~~~~~~ 605 (1084)
..+.+||+.+.+-...-. +. .........+. .++..++.|+.. ..+..+|..+....
T Consensus 217 ~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 217 NAVQFFDPASGKWTEVETTGAKPSARSVFAHAV--VGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred CceEEEEcCCCcEEeccccCCCCCCcceeeeEE--ECCEEEEECcccCCccccccccccccccEEEEEcCccEEE
Confidence 458889988765543211 10 00001122222 345666777742 25778888776654
No 496
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=80.64 E-value=76 Score=32.99 Aligned_cols=196 Identities=12% Similarity=0.033 Sum_probs=111.2
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
.+-+..+.|+. ++...+..+.-++|.|+.+.........+.. .+--.++.. .|+ +...+..|.-+.+.|+.+.
T Consensus 86 ~~l~~Dv~vse--~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt-~gyaygv~v--sGn--~aYVadlddgfLivdvsdp 158 (370)
T COG5276 86 RDLFADVRVSE--EYVYVADWSSGLRIVDISTPDSPTLIGFLNT-DGYAYGVYV--SGN--YAYVADLDDGFLIVDVSDP 158 (370)
T ss_pred hhhhheeEecc--cEEEEEcCCCceEEEeccCCCCcceeccccC-CceEEEEEe--cCC--EEEEeeccCcEEEEECCCC
Confidence 34566777874 4565665666699999998776554333322 122334444 466 5666665556777787754
Q ss_pred c---eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 468 S---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 468 ~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+ ...+.......-..++. .|++-+.+..|+-+.+-|+........+ ...+..+.++..+++-.+++....
T Consensus 159 ssP~lagrya~~~~d~~~v~I----SGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~e- 233 (370)
T COG5276 159 SSPQLAGRYALPGGDTHDVAI----SGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYDE- 233 (370)
T ss_pred CCceeeeeeccCCCCceeEEE----ecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEccc-
Confidence 3 33444444444455555 2357777888999999999876543322 222236777888777777766532
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
-+.+-|..+.+....+.... ...++.--.+.-.+++...+..+.-+.+-|..+
T Consensus 234 -----gvlivd~s~~ssp~~~gsye-t~~p~~~s~v~Vs~~~~Yvadga~gl~~idisn 286 (370)
T COG5276 234 -----GVLIVDVSGPSSPTVFGSYE-TSNPVSISTVPVSGEYAYVADGAKGLPIIDISN 286 (370)
T ss_pred -----ceEEEecCCCCCceEeeccc-cCCcccccceecccceeeeeccccCceeEeccC
Confidence 26777766554333332222 012222213333456666666666666666543
No 497
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=80.46 E-value=35 Score=36.06 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=62.5
Q ss_pred cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe------cCCeEEEEECCCCCceEeec----CCCCeEEEE
Q 001403 458 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS------VDGKIKAWLYDSLGARVDYD----APGLGCTRM 527 (1084)
Q Consensus 458 ~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~----~~~~~i~~~ 527 (1084)
.|++||..+.+-..--.+-.+.|.++.|. .+.++++.|. ....+..||+.+..-...-. .-.+++..+
T Consensus 17 ~lC~yd~~~~qW~~~g~~i~G~V~~l~~~--~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~a~ 94 (281)
T PF12768_consen 17 GLCLYDTDNSQWSSPGNGISGTVTDLQWA--SNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVTAL 94 (281)
T ss_pred EEEEEECCCCEeecCCCCceEEEEEEEEe--cCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEEEE
Confidence 59999988776655555567889999985 3445666664 34568888887654322111 123567777
Q ss_pred EEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 528 AYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 528 ~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.+. .|+..+..++....+...|..||-.....+
T Consensus 95 ~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~W~~i 128 (281)
T PF12768_consen 95 TFISNDGSNFWVAGRSANGSTFLMKYDGSSWSSI 128 (281)
T ss_pred EeeccCCceEEEeceecCCCceEEEEcCCceEec
Confidence 664 355445544443566778888886554433
No 498
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=80.45 E-value=7.6 Score=26.87 Aligned_cols=39 Identities=21% Similarity=0.172 Sum_probs=28.2
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEE
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAF 843 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 843 (1084)
|++++|.++. +++|.++|..+++.+..+.. ......++|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v-g~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV-GGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC-CCCCceEEe
Confidence 5788777776 58999999999988887765 233344444
No 499
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=80.36 E-value=99 Score=34.14 Aligned_cols=228 Identities=10% Similarity=-0.026 Sum_probs=0.0
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----------CcEEEEECCCCcee
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KTIKVWDAVTGSRT 470 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----------~~i~vwd~~~g~~~ 470 (1084)
|++-|.....+..+|++.....-....--............-+++ +.+.|+.+ ..+..||..+.+-.
T Consensus 21 yv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~--iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~ 98 (346)
T TIGR03547 21 YVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGK--LYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQ 98 (346)
T ss_pred EEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCE--EEEEeCCCCCCCCCcceecccEEEEECCCCEEe
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecC---------------------------------------CeEEEEECCCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVD---------------------------------------GKIKAWLYDSL 511 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d---------------------------------------g~i~iwd~~~~ 511 (1084)
..-..........+....-++++.+.|+.+ ..+.+||..+.
T Consensus 99 ~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~ 178 (346)
T TIGR03547 99 KLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTN 178 (346)
T ss_pred cCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCC
Q ss_pred CceEeecCCC-CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe------cCCCceEeeeeec-----cccccCceEEEEEc
Q 001403 512 GARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEW------NESEGAIKRTYQG-----LQLQHNSVSVVHFD 579 (1084)
Q Consensus 512 ~~~~~~~~~~-~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w------d~~~~~~~~~~~~-----~~~~~~~v~~~~~s 579 (1084)
+=...-..+. ......+...+++..+.++....+.....+| +......+..+.. +. ......+..
T Consensus 179 ~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~---~~~~~~a~~ 255 (346)
T TIGR03547 179 QWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQE---GLAGAFAGI 255 (346)
T ss_pred ceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccc---cccEEeeeE
Q ss_pred CCCCEEEEEECC----------------------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 580 TAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 580 ~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.+++.++.|+.+ ..+.+||..+.+.......... .....+..-+++++++|+.+.
T Consensus 256 ~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~--~~~~~~~~~~~~iyv~GG~~~ 332 (346)
T TIGR03547 256 SNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQG--LAYGVSVSWNNGVLLIGGENS 332 (346)
T ss_pred ECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCC--ceeeEEEEcCCEEEEEeccCC
No 500
>PRK13614 lipoprotein LpqB; Provisional
Probab=79.55 E-value=1.2e+02 Score=35.78 Aligned_cols=194 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred CCEEEEEeCCeEEEEEcCCceeEEEEcCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEE
Q 001403 806 DAYLFSASGGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884 (1084)
Q Consensus 806 g~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 884 (1084)
...++...+|.+...+-..-..+.-..+... .+.+++.++ ++..+|....++.-..+--..+.....+.+.. ++.-
T Consensus 312 ~~~l~~~~~G~l~~~~~~~~~pv~g~~g~~~~~~~s~avS~-~g~~~A~~~~~~~~l~~~~~g~~~~~~~~g~~--Lt~P 388 (573)
T PRK13614 312 PNRQIGVSDGELVRYENGQISPLPDIQSVAGLGPASPAESP-VSQTVAFLNGSRTTLYTVSPGQPARALTSGST--LTRP 388 (573)
T ss_pred CcceEEecCCeEEEecCCCcccCCCccCcCcccccceeecC-CCceEEEecCCCcEEEEecCCCcceeeecCCC--ccCC
Q ss_pred EEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE--EeCCe--EEEEEcCC
Q 001403 885 VFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETH--LAIYEAEE 958 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~--~~d~~--i~vwd~~~ 958 (1084)
.|.++| .+-+...+. .|....-.......................|+.+..|+||..+|. ..++. |+|--+..
T Consensus 389 S~d~~g-~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R 467 (573)
T PRK13614 389 SFSPQD-WVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVR 467 (573)
T ss_pred cccCCC-CEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEe
Q ss_pred cceee--EeecCCC----CCEEEEEEccCCCEEEEEe---CCCcEEEEEcCCCc
Q 001403 959 LTCLK--QWFPISS----VPISQATFSCDCRMVFTSF---VDGTLSIHEASNLE 1003 (1084)
Q Consensus 959 ~~~~~--~~~~~h~----~~v~~l~fs~dg~~l~t~~---~dg~i~vwd~~~~~ 1003 (1084)
...=. .+..... ..+.++.|..++.+++.+. .+..+++..+..|.
T Consensus 468 ~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~~~~~~~~~~~~v~v~~g~ 521 (573)
T PRK13614 468 NEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTKASATSNVVPELLSVDAGQ 521 (573)
T ss_pred CCCCCeEEccCceecccCCCcceeEEcCCCEEEEEeccCCCcceEEEEEeCCCC
Done!