Query 001403
Match_columns 1084
No_of_seqs 916 out of 5295
Neff 10.5
Searched_HMMs 29240
Date Tue Mar 26 02:18:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001403.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/001403hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 100.0 3.5E-68 1.2E-72 642.2 80.7 568 326-1051 8-577 (577)
2 1nr0_A Actin interacting prote 100.0 1.8E-66 6.2E-71 627.4 75.6 576 332-1000 16-610 (611)
3 2ymu_A WD-40 repeat protein; u 100.0 2.3E-63 7.8E-68 600.1 72.4 557 295-998 19-577 (577)
4 1nr0_A Actin interacting prote 100.0 1E-63 3.5E-68 603.4 68.9 570 387-1052 17-609 (611)
5 3sfz_A APAF-1, apoptotic pepti 100.0 1.2E-64 4.1E-69 667.7 62.2 661 284-1054 553-1249(1249)
6 1pgu_A Actin interacting prote 100.0 1.6E-60 5.5E-65 580.5 68.3 562 331-1002 15-615 (615)
7 3sfz_A APAF-1, apoptotic pepti 100.0 2.2E-58 7.5E-63 607.9 68.2 589 382-1057 609-1210(1249)
8 2oaj_A Protein SNI1; WD40 repe 100.0 1.6E-57 5.5E-62 567.9 66.8 596 328-1010 11-792 (902)
9 1pgu_A Actin interacting prote 100.0 1.3E-57 4.5E-62 554.7 63.9 554 385-1054 15-614 (615)
10 2oaj_A Protein SNI1; WD40 repe 100.0 4E-56 1.4E-60 555.3 56.1 596 384-1057 13-786 (902)
11 3mkq_A Coatomer beta'-subunit; 100.0 2.2E-47 7.5E-52 480.8 58.3 558 326-1002 5-602 (814)
12 3mkq_A Coatomer beta'-subunit; 100.0 1.4E-46 4.7E-51 473.5 59.1 562 383-1054 8-601 (814)
13 1vyh_C Platelet-activating fac 100.0 8.2E-45 2.8E-49 415.3 39.5 288 328-643 102-409 (410)
14 3ow8_A WD repeat-containing pr 100.0 9.7E-40 3.3E-44 359.4 40.5 294 325-644 23-320 (321)
15 1got_B GT-beta; complex (GTP-b 100.0 3.7E-39 1.3E-43 358.8 43.5 296 323-642 44-340 (340)
16 2pbi_B Guanine nucleotide-bind 100.0 4.6E-39 1.6E-43 359.6 43.9 298 324-642 54-354 (354)
17 2ynn_A Coatomer subunit beta'; 100.0 1.2E-38 4.1E-43 348.5 39.5 293 325-645 4-302 (304)
18 3frx_A Guanine nucleotide-bind 100.0 2.9E-38 9.9E-43 347.9 41.4 298 325-646 8-318 (319)
19 1vyh_C Platelet-activating fac 100.0 1.1E-38 3.7E-43 364.6 39.3 286 384-707 104-409 (410)
20 4g56_B MGC81050 protein; prote 100.0 5.4E-39 1.8E-43 359.3 34.0 320 693-1057 19-346 (357)
21 1got_B GT-beta; complex (GTP-b 100.0 7.1E-38 2.4E-42 348.5 42.8 287 383-706 50-340 (340)
22 3iz6_a 40S ribosomal protein R 100.0 8.4E-39 2.9E-43 361.9 34.7 306 324-647 56-377 (380)
23 3ow8_A WD repeat-containing pr 100.0 3.7E-38 1.3E-42 346.8 38.2 289 384-708 28-320 (321)
24 3fm0_A Protein CIAO1; WDR39,SG 100.0 5.4E-38 1.9E-42 350.0 39.3 306 325-650 6-340 (345)
25 4gqb_B Methylosome protein 50; 100.0 1E-37 3.5E-42 345.6 36.3 296 725-1055 29-332 (344)
26 4g56_B MGC81050 protein; prote 100.0 8.7E-38 3E-42 349.5 35.7 299 331-646 39-344 (357)
27 4gqb_B Methylosome protein 50; 100.0 1.4E-37 4.7E-42 344.6 36.8 299 331-646 27-332 (344)
28 4ery_A WD repeat-containing pr 100.0 1.5E-36 5E-41 334.1 43.1 295 325-644 14-311 (312)
29 2pbi_B Guanine nucleotide-bind 100.0 9E-37 3.1E-41 341.1 41.6 287 384-706 60-354 (354)
30 1r5m_A SIR4-interacting protei 100.0 6.2E-37 2.1E-41 353.6 41.1 344 365-908 25-424 (425)
31 2ynn_A Coatomer subunit beta'; 100.0 1.4E-36 4.8E-41 332.1 39.4 270 383-667 8-281 (304)
32 1r5m_A SIR4-interacting protei 100.0 8.9E-37 3.1E-41 352.3 38.2 327 332-708 43-424 (425)
33 3frx_A Guanine nucleotide-bind 100.0 6.2E-36 2.1E-40 329.3 43.1 297 383-757 12-317 (319)
34 2hes_X YDR267CP; beta-propelle 100.0 1.9E-36 6.4E-41 335.3 39.1 297 325-645 5-328 (330)
35 1gxr_A ESG1, transducin-like e 100.0 3.8E-36 1.3E-40 334.9 41.7 324 333-755 8-335 (337)
36 2xzm_R RACK1; ribosome, transl 100.0 2.2E-36 7.6E-41 337.0 39.0 298 324-646 11-341 (343)
37 1erj_A Transcriptional repress 100.0 4.9E-36 1.7E-40 340.8 41.3 285 332-645 62-389 (393)
38 3iz6_a 40S ribosomal protein R 100.0 5.4E-37 1.8E-41 347.0 31.6 291 383-708 61-374 (380)
39 4ery_A WD repeat-containing pr 100.0 1.8E-35 6.2E-40 325.3 41.9 291 383-708 18-311 (312)
40 3fm0_A Protein CIAO1; WDR39,SG 100.0 8.7E-36 3E-40 332.2 39.8 297 725-1056 14-337 (345)
41 2pm9_A Protein WEB1, protein t 100.0 6.3E-37 2.1E-41 352.6 30.0 358 335-709 13-414 (416)
42 1k32_A Tricorn protease; prote 100.0 1E-34 3.5E-39 372.3 53.6 526 387-1003 13-639 (1045)
43 4aow_A Guanine nucleotide-bind 100.0 5E-35 1.7E-39 326.5 42.9 300 325-647 29-339 (340)
44 2hes_X YDR267CP; beta-propelle 100.0 5.6E-35 1.9E-39 323.4 42.7 306 556-1001 3-328 (330)
45 1gxr_A ESG1, transducin-like e 100.0 1E-34 3.5E-39 323.4 43.5 320 296-643 13-335 (337)
46 3vl1_A 26S proteasome regulato 100.0 1.1E-35 3.9E-40 342.5 36.8 346 390-909 58-419 (420)
47 3gre_A Serine/threonine-protei 100.0 2.3E-35 7.8E-40 341.7 37.1 383 341-906 34-437 (437)
48 1erj_A Transcriptional repress 100.0 5E-35 1.7E-39 332.5 38.3 290 386-709 62-389 (393)
49 2pm9_A Protein WEB1, protein t 100.0 2E-36 6.9E-41 348.3 26.8 337 571-1002 13-415 (416)
50 3vl1_A 26S proteasome regulato 100.0 1.8E-35 6E-40 340.9 33.4 349 336-756 58-418 (420)
51 2xzm_R RACK1; ribosome, transl 100.0 1.9E-34 6.6E-39 321.3 40.6 290 382-710 15-341 (343)
52 2j04_B YDR362CP, TAU91; beta p 100.0 7.5E-36 2.6E-40 347.2 27.5 272 326-645 126-428 (524)
53 1k32_A Tricorn protease; prote 100.0 7.1E-34 2.4E-38 364.5 48.0 502 317-960 35-639 (1045)
54 3dm0_A Maltose-binding peripla 100.0 2.9E-34 1E-38 352.4 41.6 296 326-644 374-692 (694)
55 2j04_B YDR362CP, TAU91; beta p 100.0 6.3E-36 2.2E-40 347.8 24.4 350 387-909 132-517 (524)
56 2ovr_B FBW7, F-BOX/WD repeat p 100.0 2.2E-33 7.4E-38 325.6 44.6 328 326-757 110-442 (445)
57 2ovr_B FBW7, F-BOX/WD repeat p 100.0 3.5E-33 1.2E-37 323.9 45.7 319 384-867 114-442 (445)
58 3v7d_B Cell division control p 100.0 3.7E-33 1.3E-37 326.0 45.5 320 383-864 116-460 (464)
59 3ei3_B DNA damage-binding prot 100.0 4.8E-34 1.6E-38 324.2 36.9 298 324-645 63-382 (383)
60 3v7d_B Cell division control p 100.0 2.7E-33 9.4E-38 327.1 43.4 305 325-665 112-442 (464)
61 4aow_A Guanine nucleotide-bind 100.0 4.3E-33 1.5E-37 310.7 42.9 315 367-758 18-338 (340)
62 1sq9_A Antiviral protein SKI8; 100.0 8.6E-34 2.9E-38 324.0 37.1 298 325-646 7-396 (397)
63 3zwl_B Eukaryotic translation 100.0 4.7E-33 1.6E-37 314.3 41.1 292 326-647 24-348 (369)
64 3gre_A Serine/threonine-protei 100.0 1.1E-33 3.9E-38 327.5 35.7 294 298-651 33-365 (437)
65 3odt_A Protein DOA1; ubiquitin 100.0 5.1E-33 1.8E-37 306.0 38.0 293 324-650 8-301 (313)
66 3i2n_A WD repeat-containing pr 100.0 1.7E-33 5.7E-38 316.4 32.5 299 323-647 7-355 (357)
67 3ei3_B DNA damage-binding prot 100.0 6.1E-33 2.1E-37 315.1 37.2 308 550-1001 56-382 (383)
68 4a11_B DNA excision repair pro 100.0 3E-33 1E-37 320.7 34.5 348 547-1053 23-404 (408)
69 3zwl_B Eukaryotic translation 100.0 2.4E-32 8.2E-37 308.5 41.0 287 383-709 27-346 (369)
70 3k26_A Polycomb protein EED; W 100.0 2.3E-33 7.7E-38 316.6 32.3 292 328-644 12-365 (366)
71 4e54_B DNA damage-binding prot 100.0 2E-33 6.7E-38 324.4 32.1 301 562-1005 114-434 (435)
72 4h5i_A Guanine nucleotide-exch 100.0 3.6E-33 1.2E-37 312.9 31.4 297 336-646 16-344 (365)
73 4e54_B DNA damage-binding prot 100.0 2.1E-33 7E-38 324.2 30.2 302 326-648 111-433 (435)
74 1k8k_C P40, ARP2/3 complex 41 100.0 1.5E-32 5.1E-37 310.6 36.7 293 330-646 4-362 (372)
75 4h5i_A Guanine nucleotide-exch 100.0 1.7E-32 5.9E-37 307.3 35.7 203 793-1002 132-344 (365)
76 3dm0_A Maltose-binding peripla 100.0 7.5E-32 2.5E-36 331.0 44.1 212 428-648 377-595 (694)
77 2j04_A TAU60, YPL007P, hypothe 100.0 4E-33 1.4E-37 312.8 29.3 317 331-746 12-350 (588)
78 2pm7_B Protein transport prote 100.0 2.9E-32 9.9E-37 296.7 34.3 253 328-600 3-284 (297)
79 3dwl_C Actin-related protein 2 100.0 1.3E-33 4.4E-38 320.0 23.8 291 330-643 7-377 (377)
80 4aez_A CDC20, WD repeat-contai 100.0 7.2E-32 2.5E-36 307.9 38.3 300 328-652 85-387 (401)
81 2pm7_B Protein transport prote 100.0 3.3E-32 1.1E-36 296.3 33.8 252 384-645 5-285 (297)
82 1sq9_A Antiviral protein SKI8; 100.0 1.9E-32 6.6E-37 312.8 33.5 303 383-709 11-395 (397)
83 4gga_A P55CDC, cell division c 100.0 2.9E-31 1E-35 304.8 40.9 289 336-653 107-403 (420)
84 1k8k_C P40, ARP2/3 complex 41 100.0 5.5E-32 1.9E-36 306.0 34.4 290 384-709 4-361 (372)
85 4a11_B DNA excision repair pro 100.0 2E-31 6.9E-36 305.5 38.9 337 325-708 34-404 (408)
86 3k26_A Polycomb protein EED; W 100.0 6.8E-32 2.3E-36 304.4 30.6 290 383-708 13-365 (366)
87 3odt_A Protein DOA1; ubiquitin 100.0 6.5E-31 2.2E-35 289.2 37.6 281 383-711 13-298 (313)
88 2j04_A TAU60, YPL007P, hypothe 100.0 1.1E-32 3.7E-37 309.2 22.9 314 387-813 14-349 (588)
89 4ggc_A P55CDC, cell division c 100.0 3.9E-30 1.3E-34 283.7 42.3 282 337-646 28-316 (318)
90 3i2n_A WD repeat-containing pr 100.0 2.2E-31 7.7E-36 299.0 32.8 292 383-708 13-352 (357)
91 3dw8_B Serine/threonine-protei 100.0 2.9E-31 9.9E-36 308.4 33.6 293 332-644 26-445 (447)
92 3bg1_A Protein SEC13 homolog; 100.0 5.4E-32 1.8E-36 297.4 25.7 253 328-600 7-292 (316)
93 4gga_A P55CDC, cell division c 100.0 8.9E-31 3E-35 300.7 36.9 281 390-711 107-397 (420)
94 1yfq_A Cell cycle arrest prote 100.0 4.1E-31 1.4E-35 295.0 33.0 286 328-642 5-321 (342)
95 3dwl_C Actin-related protein 2 100.0 1.9E-32 6.4E-37 310.4 20.9 240 387-644 10-280 (377)
96 3bg1_A Protein SEC13 homolog; 100.0 1.8E-31 6E-36 293.3 25.1 251 383-645 8-293 (316)
97 3mmy_A MRNA export factor; mRN 100.0 1.9E-30 6.7E-35 292.7 34.2 296 322-644 27-345 (368)
98 1p22_A F-BOX/WD-repeat protein 100.0 3.8E-30 1.3E-34 297.1 34.9 278 330-649 129-418 (435)
99 4aez_A CDC20, WD repeat-contai 100.0 3.9E-30 1.3E-34 293.5 34.1 282 386-710 89-381 (401)
100 4ggc_A P55CDC, cell division c 100.0 1.3E-29 4.4E-34 279.5 36.4 277 391-708 28-314 (318)
101 3f3f_A Nucleoporin SEH1; struc 100.0 3.6E-30 1.2E-34 288.0 31.7 306 327-652 4-344 (351)
102 3dw8_B Serine/threonine-protei 100.0 2.8E-30 9.7E-35 300.1 31.9 253 387-649 27-377 (447)
103 1p22_A F-BOX/WD-repeat protein 100.0 1.1E-29 3.9E-34 293.1 34.8 274 385-710 130-415 (435)
104 2aq5_A Coronin-1A; WD40 repeat 100.0 7.9E-30 2.7E-34 291.3 32.5 295 335-647 35-344 (402)
105 3jrp_A Fusion protein of prote 100.0 1.8E-29 6.2E-34 286.0 32.3 260 326-603 3-289 (379)
106 1yfq_A Cell cycle arrest prote 100.0 1.7E-29 5.9E-34 281.7 31.0 285 384-707 7-322 (342)
107 3jrp_A Fusion protein of prote 100.0 2E-29 6.7E-34 285.8 31.5 256 384-649 7-291 (379)
108 3mmy_A MRNA export factor; mRN 100.0 8.6E-29 2.9E-33 279.1 35.5 291 383-708 34-345 (368)
109 3f3f_A Nucleoporin SEH1; struc 100.0 2.6E-29 9E-34 281.0 30.5 295 383-710 6-338 (351)
110 2w18_A PALB2, fancn, partner a 100.0 1.2E-27 4.2E-32 251.6 37.6 294 435-907 41-355 (356)
111 2vdu_B TRNA (guanine-N(7)-)-me 100.0 4.3E-28 1.5E-32 281.1 36.6 289 336-645 6-391 (450)
112 3vu4_A KMHSV2; beta-propeller 100.0 3E-28 1E-32 272.1 32.8 282 327-646 12-337 (355)
113 2aq5_A Coronin-1A; WD40 repeat 100.0 3.3E-28 1.1E-32 277.8 32.4 285 389-708 35-341 (402)
114 1l0q_A Surface layer protein; 100.0 6.2E-27 2.1E-31 266.4 42.7 328 449-945 4-364 (391)
115 2w18_A PALB2, fancn, partner a 100.0 1.5E-27 5.1E-32 251.0 33.3 270 628-999 56-355 (356)
116 3bws_A Protein LP49; two-domai 100.0 2.3E-27 7.8E-32 274.2 37.6 353 334-756 60-431 (433)
117 3bws_A Protein LP49; two-domai 100.0 1.2E-26 4.2E-31 268.1 43.3 355 387-909 26-432 (433)
118 2xyi_A Probable histone-bindin 100.0 1.3E-27 4.5E-32 275.0 34.5 253 383-646 123-411 (430)
119 1l0q_A Surface layer protein; 100.0 1.9E-26 6.5E-31 262.4 43.1 279 347-657 3-287 (391)
120 3jro_A Fusion protein of prote 100.0 9.8E-29 3.4E-33 304.5 25.3 255 383-647 4-287 (753)
121 3vu4_A KMHSV2; beta-propeller 100.0 6.4E-27 2.2E-31 261.3 35.9 298 384-713 15-340 (355)
122 3jro_A Fusion protein of prote 100.0 2.7E-28 9.2E-33 300.6 25.9 257 327-603 2-287 (753)
123 2vdu_B TRNA (guanine-N(7)-)-me 100.0 3.8E-27 1.3E-31 273.1 33.2 265 389-667 5-365 (450)
124 3lrv_A PRE-mRNA-splicing facto 100.0 1.5E-27 5.2E-32 265.6 27.8 278 623-1003 45-335 (343)
125 1nir_A Nitrite reductase; hemo 100.0 1.6E-26 5.3E-31 271.4 37.7 343 528-966 144-522 (543)
126 2xyi_A Probable histone-bindin 100.0 5.1E-27 1.7E-31 270.0 31.4 258 327-602 121-411 (430)
127 4gq1_A NUP37; propeller, trans 100.0 1.1E-27 3.9E-32 271.5 21.0 245 386-643 87-387 (393)
128 1nir_A Nitrite reductase; hemo 100.0 9.3E-26 3.2E-30 264.8 37.7 330 578-1009 145-522 (543)
129 3lrv_A PRE-mRNA-splicing facto 100.0 4.2E-27 1.4E-31 262.0 24.7 271 340-644 42-332 (343)
130 4gq1_A NUP37; propeller, trans 99.9 1.3E-26 4.4E-31 262.9 22.1 251 327-599 82-387 (393)
131 2hqs_A Protein TOLB; TOLB, PAL 99.9 1.3E-24 4.4E-29 247.6 30.6 313 334-668 62-409 (415)
132 2hqs_A Protein TOLB; TOLB, PAL 99.9 7E-24 2.4E-28 241.6 30.7 305 433-890 62-409 (415)
133 2ecf_A Dipeptidyl peptidase IV 99.9 1.6E-23 5.5E-28 259.8 36.1 292 334-645 36-413 (741)
134 2ecf_A Dipeptidyl peptidase IV 99.9 6.2E-23 2.1E-27 254.5 35.4 330 433-910 36-460 (741)
135 1xfd_A DIP, dipeptidyl aminope 99.9 7.3E-23 2.5E-27 253.2 31.5 385 523-1007 18-449 (723)
136 1xfd_A DIP, dipeptidyl aminope 99.9 5E-23 1.7E-27 254.7 29.2 314 336-672 18-425 (723)
137 2z3z_A Dipeptidyl aminopeptida 99.9 2.1E-21 7.2E-26 239.2 35.7 239 390-644 27-341 (706)
138 2z3z_A Dipeptidyl aminopeptida 99.9 2.4E-21 8.1E-26 238.7 33.4 324 436-911 28-437 (706)
139 3u4y_A Uncharacterized protein 99.9 1.9E-20 6.4E-25 207.3 35.1 279 340-646 3-305 (331)
140 3vgz_A Uncharacterized protein 99.9 1.3E-20 4.5E-25 210.7 33.8 280 335-636 41-335 (353)
141 1ri6_A Putative isomerase YBHE 99.9 2.6E-20 8.8E-25 207.3 35.8 206 796-1005 85-314 (343)
142 1pby_B Quinohemoprotein amine 99.9 2.3E-20 7.9E-25 207.1 34.6 279 583-1009 2-318 (337)
143 1ri6_A Putative isomerase YBHE 99.9 4.4E-20 1.5E-24 205.4 35.4 265 365-644 15-307 (343)
144 3u4y_A Uncharacterized protein 99.9 1.1E-19 3.6E-24 201.2 35.4 197 439-647 3-209 (331)
145 3vgz_A Uncharacterized protein 99.9 1.5E-19 5.2E-24 202.0 36.1 248 389-651 41-309 (353)
146 1pby_B Quinohemoprotein amine 99.9 6.4E-20 2.2E-24 203.5 29.8 280 347-654 2-319 (337)
147 1z68_A Fibroblast activation p 99.9 9.2E-21 3.2E-25 233.9 24.4 378 526-1009 20-451 (719)
148 2ojh_A Uncharacterized protein 99.9 4.3E-20 1.5E-24 200.5 26.3 253 364-636 21-293 (297)
149 3hfq_A Uncharacterized protein 99.8 7.6E-19 2.6E-23 195.7 33.7 248 793-1057 38-320 (347)
150 3scy_A Hypothetical bacterial 99.8 2.8E-18 9.5E-23 192.3 37.9 306 341-665 8-360 (361)
151 3hfq_A Uncharacterized protein 99.8 1.8E-18 6.2E-23 192.6 35.4 273 365-648 16-322 (347)
152 3o4h_A Acylamino-acid-releasin 99.8 6.6E-20 2.3E-24 219.9 24.5 272 334-644 21-314 (582)
153 2ojh_A Uncharacterized protein 99.8 1.6E-19 5.4E-24 196.1 25.2 247 322-592 29-293 (297)
154 3scy_A Hypothetical bacterial 99.8 1.7E-17 5.9E-22 185.8 40.7 312 531-979 11-360 (361)
155 1z68_A Fibroblast activation p 99.8 7.5E-20 2.6E-24 225.7 23.1 340 295-652 18-450 (719)
156 3o4h_A Acylamino-acid-releasin 99.8 3E-19 1E-23 214.3 26.9 237 387-643 20-274 (582)
157 3pe7_A Oligogalacturonate lyas 99.8 6.1E-19 2.1E-23 200.0 27.6 311 318-644 14-381 (388)
158 4a5s_A Dipeptidyl peptidase 4 99.8 1.6E-18 5.5E-23 213.5 32.6 278 336-648 18-356 (740)
159 4a5s_A Dipeptidyl peptidase 4 99.8 4.6E-18 1.6E-22 209.4 36.3 379 524-1008 19-456 (740)
160 1jmx_B Amine dehydrogenase; ox 99.8 4.9E-18 1.7E-22 189.4 32.7 300 575-1009 4-333 (349)
161 2oit_A Nucleoporin 214KDA; NH2 99.8 9.2E-19 3.2E-23 199.7 26.6 208 335-557 37-279 (434)
162 2oit_A Nucleoporin 214KDA; NH2 99.8 6.4E-19 2.2E-23 201.0 25.1 270 794-1077 36-356 (434)
163 1jmx_B Amine dehydrogenase; ox 99.8 8.3E-18 2.8E-22 187.5 30.0 282 339-653 4-333 (349)
164 3pe7_A Oligogalacturonate lyas 99.8 5.5E-18 1.9E-22 192.1 27.4 307 369-709 14-382 (388)
165 1jof_A Carboxy-CIS,CIS-muconat 99.8 2.1E-17 7.1E-22 185.1 30.8 249 795-1055 40-342 (365)
166 2oiz_A Aromatic amine dehydrog 99.8 1E-16 3.4E-21 178.4 32.8 224 795-1036 108-360 (361)
167 1jof_A Carboxy-CIS,CIS-muconat 99.8 1E-16 3.4E-21 179.5 29.8 250 387-646 38-342 (365)
168 2oiz_A Aromatic amine dehydrog 99.8 5.3E-16 1.8E-20 172.5 33.9 313 490-891 14-360 (361)
169 3c5m_A Oligogalacturonate lyas 99.8 9E-17 3.1E-21 182.6 27.0 301 324-646 20-385 (396)
170 1qks_A Cytochrome CD1 nitrite 99.7 7.3E-15 2.5E-19 171.3 36.6 329 546-966 176-546 (567)
171 2gop_A Trilobed protease; beta 99.7 1.9E-15 6.5E-20 168.2 29.0 270 336-644 16-330 (347)
172 3azo_A Aminopeptidase; POP fam 99.7 1.9E-15 6.7E-20 184.3 30.0 295 328-650 17-374 (662)
173 1qks_A Cytochrome CD1 nitrite 99.7 5.5E-14 1.9E-18 163.9 40.5 325 580-1009 165-546 (567)
174 3c5m_A Oligogalacturonate lyas 99.7 6.3E-16 2.2E-20 175.6 22.4 244 391-648 38-332 (396)
175 3fvz_A Peptidyl-glycine alpha- 99.7 1.1E-14 3.8E-19 160.1 28.8 248 794-1054 23-322 (329)
176 1q7f_A NHL, brain tumor CG1071 99.7 3.5E-14 1.2E-18 152.9 31.7 241 793-1055 28-281 (286)
177 3azo_A Aminopeptidase; POP fam 99.7 9.9E-15 3.4E-19 178.0 30.3 250 384-643 19-321 (662)
178 4a2l_A BT_4663, two-component 99.7 7.2E-10 2.5E-14 137.4 72.0 585 335-1054 43-659 (795)
179 1q7f_A NHL, brain tumor CG1071 99.6 1E-13 3.4E-18 149.3 31.6 246 386-646 27-281 (286)
180 3fvz_A Peptidyl-glycine alpha- 99.6 2.8E-14 9.7E-19 156.8 27.2 245 389-645 24-322 (329)
181 2xdw_A Prolyl endopeptidase; a 99.6 4.7E-14 1.6E-18 172.8 32.0 288 344-647 81-416 (710)
182 4a2l_A BT_4663, two-component 99.6 3.4E-10 1.2E-14 140.4 65.4 535 335-1000 88-658 (795)
183 2dg1_A DRP35, lactonase; beta 99.6 1.9E-13 6.5E-18 150.8 30.8 273 336-636 7-301 (333)
184 2gop_A Trilobed protease; beta 99.6 3.1E-13 1E-17 150.2 30.8 285 572-1003 16-332 (347)
185 2xdw_A Prolyl endopeptidase; a 99.6 1.5E-13 5.2E-18 168.3 28.7 254 332-603 122-416 (710)
186 2bkl_A Prolyl endopeptidase; m 99.6 1.4E-13 4.9E-18 167.9 27.7 286 342-647 75-399 (695)
187 3v9f_A Two-component system se 99.6 1.6E-08 5.4E-13 125.1 72.0 546 389-1054 66-656 (781)
188 3sjl_D Methylamine dehydrogena 99.6 2.6E-12 8.8E-17 139.7 32.6 205 796-1009 138-371 (386)
189 2dg1_A DRP35, lactonase; beta 99.6 4.3E-13 1.5E-17 148.0 27.1 263 389-667 6-290 (333)
190 2z2n_A Virginiamycin B lyase; 99.6 1.4E-11 4.8E-16 133.3 38.4 285 330-646 10-296 (299)
191 2mad_H Methylamine dehydrogena 99.6 2E-11 6.8E-16 135.4 39.5 204 797-1008 127-357 (373)
192 3dsm_A Uncharacterized protein 99.6 2.3E-12 7.9E-17 141.2 31.2 201 797-1009 86-309 (328)
193 3e5z_A Putative gluconolactona 99.6 9.9E-13 3.4E-17 142.2 27.5 248 325-604 18-289 (296)
194 3e5z_A Putative gluconolactona 99.5 1.6E-12 5.5E-17 140.5 28.6 238 384-646 23-287 (296)
195 3no2_A Uncharacterized protein 99.5 2.2E-12 7.6E-17 136.7 27.6 247 805-1067 4-265 (276)
196 3dsm_A Uncharacterized protein 99.5 2E-12 6.9E-17 141.6 27.5 273 365-653 17-309 (328)
197 1yr2_A Prolyl oligopeptidase; 99.5 6.5E-13 2.2E-17 163.4 25.7 285 342-647 114-443 (741)
198 2bkl_A Prolyl endopeptidase; m 99.5 3.8E-13 1.3E-17 164.2 23.5 255 332-605 118-401 (695)
199 3no2_A Uncharacterized protein 99.5 5.6E-12 1.9E-16 133.6 29.0 248 345-621 4-272 (276)
200 3sjl_D Methylamine dehydrogena 99.5 1E-11 3.5E-16 135.0 30.9 313 486-889 39-384 (386)
201 2z2n_A Virginiamycin B lyase; 99.5 7.6E-11 2.6E-15 127.5 38.1 239 387-644 13-254 (299)
202 2mad_H Methylamine dehydrogena 99.5 4.2E-11 1.4E-15 132.8 36.2 286 341-651 27-356 (373)
203 1rwi_B Serine/threonine-protei 99.5 2.7E-12 9.4E-17 136.6 25.4 239 796-1056 25-266 (270)
204 3v9f_A Two-component system se 99.5 6.3E-08 2.2E-12 119.7 67.3 557 388-1053 18-610 (781)
205 1rwi_B Serine/threonine-protei 99.5 5E-12 1.7E-16 134.6 25.8 240 390-647 25-266 (270)
206 3c75_H MADH, methylamine dehyd 99.5 1.7E-11 5.9E-16 136.0 30.3 207 797-1009 179-410 (426)
207 2qc5_A Streptogramin B lactona 99.5 2.1E-10 7.1E-15 124.1 37.5 279 332-643 17-298 (300)
208 3c75_H MADH, methylamine dehyd 99.4 7.1E-11 2.4E-15 131.0 28.7 292 531-874 82-409 (426)
209 2qc5_A Streptogramin B lactona 99.4 8.9E-10 3.1E-14 119.0 37.2 276 726-1052 19-298 (300)
210 1yr2_A Prolyl oligopeptidase; 99.4 1.2E-11 4E-16 152.2 24.0 253 332-604 160-444 (741)
211 1xip_A Nucleoporin NUP159; bet 99.4 1.8E-10 6.3E-15 125.8 28.1 174 795-989 38-232 (388)
212 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 1.7E-10 5.8E-15 125.8 27.0 246 728-1002 19-300 (314)
213 3iuj_A Prolyl endopeptidase; h 99.3 1.7E-10 5.9E-15 140.2 27.8 257 332-606 126-410 (693)
214 1pjx_A Dfpase, DIISOPROPYLFLUO 99.3 5.2E-10 1.8E-14 121.9 29.0 249 331-601 14-299 (314)
215 4a0p_A LRP6, LRP-6, low-densit 99.3 5E-06 1.7E-10 98.1 63.4 531 402-1007 8-555 (628)
216 3g4e_A Regucalcin; six bladed 99.3 8.5E-10 2.9E-14 118.9 28.8 229 728-991 14-262 (297)
217 3hrp_A Uncharacterized protein 99.3 1E-09 3.4E-14 123.6 29.3 248 795-1052 131-408 (409)
218 1mda_H Methylamine dehydrogena 99.3 2.6E-10 8.9E-15 124.5 22.7 199 797-1009 126-354 (368)
219 3g4e_A Regucalcin; six bladed 99.3 2.9E-09 9.9E-14 114.7 30.9 233 387-635 11-262 (297)
220 3iuj_A Prolyl endopeptidase; h 99.3 2.8E-10 9.7E-15 138.3 25.0 245 386-647 126-407 (693)
221 2qe8_A Uncharacterized protein 99.2 1.5E-10 5.1E-15 127.7 19.3 271 335-638 17-314 (343)
222 2qe8_A Uncharacterized protein 99.2 2.4E-10 8.1E-15 126.0 20.9 273 727-1051 17-318 (343)
223 3hrp_A Uncharacterized protein 99.2 3.1E-09 1.1E-13 119.6 30.1 241 389-643 131-408 (409)
224 1kb0_A Quinohemoprotein alcoho 99.2 4.7E-09 1.6E-13 126.1 31.9 228 814-1054 189-567 (677)
225 3q7m_A Lipoprotein YFGL, BAMB; 99.2 2.9E-08 1E-12 111.1 35.4 211 814-1052 152-376 (376)
226 3s94_A LRP-6, low-density lipo 99.2 1.2E-05 4.2E-10 94.7 58.7 518 409-1003 17-553 (619)
227 1yiq_A Quinohemoprotein alcoho 99.2 4.3E-09 1.5E-13 126.7 29.7 193 814-1009 182-513 (689)
228 3dr2_A Exported gluconolactona 99.2 2.7E-09 9.3E-14 115.4 25.3 238 324-593 34-299 (305)
229 1xip_A Nucleoporin NUP159; bet 99.2 3E-10 1E-14 124.2 17.5 189 728-945 39-230 (388)
230 1kb0_A Quinohemoprotein alcoho 99.2 5.1E-09 1.7E-13 125.8 29.1 332 492-895 78-536 (677)
231 3dr2_A Exported gluconolactona 99.2 5.5E-09 1.9E-13 113.0 26.2 231 387-637 43-299 (305)
232 2ghs_A AGR_C_1268P; regucalcin 99.2 2E-08 6.9E-13 109.6 30.8 223 390-635 50-292 (326)
233 1yiq_A Quinohemoprotein alcoho 99.2 1E-08 3.6E-13 123.3 31.0 382 449-894 72-533 (689)
234 3q7m_A Lipoprotein YFGL, BAMB; 99.2 5E-08 1.7E-12 109.2 34.8 150 449-610 55-216 (376)
235 2ghs_A AGR_C_1268P; regucalcin 99.1 2.4E-08 8.3E-13 108.9 30.0 223 336-590 50-291 (326)
236 1mda_H Methylamine dehydrogena 99.1 5.9E-09 2E-13 113.8 24.1 283 548-888 47-366 (368)
237 2ece_A 462AA long hypothetical 99.1 1.2E-07 4E-12 103.4 32.7 174 815-989 164-399 (462)
238 2ece_A 462AA long hypothetical 99.1 4.4E-08 1.5E-12 106.7 28.4 232 801-1042 88-399 (462)
239 3hxj_A Pyrrolo-quinoline quino 99.1 6.1E-09 2.1E-13 114.3 21.8 302 437-909 23-324 (330)
240 1fwx_A Nitrous oxide reductase 99.1 7E-09 2.4E-13 117.2 21.9 346 447-914 15-436 (595)
241 1fwx_A Nitrous oxide reductase 99.0 1.6E-08 5.6E-13 114.2 20.9 229 798-1044 88-408 (595)
242 2hz6_A Endoplasmic reticulum t 99.0 6E-10 2E-14 123.8 8.3 190 399-610 8-201 (369)
243 3s94_A LRP-6, low-density lipo 98.9 0.00027 9.1E-09 83.3 58.5 474 456-1004 17-513 (619)
244 4a0p_A LRP6, LRP-6, low-densit 98.9 0.0003 1E-08 83.0 61.8 528 365-964 15-555 (628)
245 3hxj_A Pyrrolo-quinoline quino 98.9 5.9E-08 2E-12 106.3 21.8 220 805-1056 107-326 (330)
246 2hz6_A Endoplasmic reticulum t 98.9 4E-10 1.4E-14 125.2 4.3 191 847-1062 8-200 (369)
247 1kv9_A Type II quinohemoprotei 98.9 9.1E-07 3.1E-11 106.1 31.2 194 814-1010 177-497 (668)
248 1npe_A Nidogen, entactin; glyc 98.9 5.2E-06 1.8E-10 87.4 33.7 247 365-627 10-263 (267)
249 1npe_A Nidogen, entactin; glyc 98.8 8.3E-06 2.8E-10 85.8 34.5 255 401-667 2-261 (267)
250 1kv9_A Type II quinohemoprotei 98.8 1.1E-06 3.9E-11 105.2 30.9 376 449-897 68-520 (668)
251 1w6s_A Methanol dehydrogenase 98.8 6.2E-06 2.1E-10 96.4 34.3 166 840-1009 245-511 (599)
252 3ei3_A DNA damage-binding prot 98.8 0.0016 5.4E-08 82.1 63.4 575 364-999 402-1060(1158)
253 2iwa_A Glutamine cyclotransfer 98.8 1.1E-06 3.8E-11 90.1 23.6 200 796-1003 22-239 (266)
254 3ei3_A DNA damage-binding prot 98.7 0.0026 8.9E-08 80.2 63.2 567 391-1054 329-999 (1158)
255 2ad6_A Methanol dehydrogenase 98.7 7.6E-06 2.6E-10 95.9 31.5 167 840-1010 239-503 (571)
256 2iwa_A Glutamine cyclotransfer 98.7 2.9E-06 9.8E-11 87.1 24.3 217 825-1056 9-239 (266)
257 3ott_A Two-component system se 98.7 0.0021 7.3E-08 78.7 66.3 573 388-1054 21-626 (758)
258 2ad6_A Methanol dehydrogenase 98.7 1.6E-05 5.6E-10 93.0 33.9 376 449-895 64-523 (571)
259 1flg_A Protein (quinoprotein e 98.7 3.6E-05 1.2E-09 90.2 35.5 150 858-1010 291-525 (582)
260 1flg_A Protein (quinoprotein e 98.6 1.6E-05 5.5E-10 93.2 31.6 378 450-894 71-544 (582)
261 1w6s_A Methanol dehydrogenase 98.6 2.6E-05 8.9E-10 91.1 32.3 380 449-893 64-530 (599)
262 3nol_A Glutamine cyclotransfer 98.6 4.8E-06 1.7E-10 84.1 21.0 186 796-991 44-245 (262)
263 2xe4_A Oligopeptidase B; hydro 98.6 7.4E-06 2.5E-10 99.9 26.4 253 336-605 175-462 (751)
264 3nok_A Glutaminyl cyclase; bet 98.5 4.6E-06 1.6E-10 84.1 19.5 183 796-990 56-254 (268)
265 3nol_A Glutamine cyclotransfer 98.5 7.2E-06 2.5E-10 82.8 20.4 185 436-634 45-244 (262)
266 2fp8_A Strictosidine synthase; 98.5 7.1E-05 2.4E-09 81.1 30.0 239 796-1056 20-315 (322)
267 2p4o_A Hypothetical protein; p 98.4 7.2E-05 2.4E-09 80.3 27.9 229 389-636 32-279 (306)
268 1k3i_A Galactose oxidase precu 98.4 9.4E-06 3.2E-10 97.6 22.7 288 339-634 190-530 (656)
269 3mbr_X Glutamine cyclotransfer 98.4 5E-05 1.7E-09 76.0 23.9 187 794-990 20-223 (243)
270 2fp8_A Strictosidine synthase; 98.4 4.4E-05 1.5E-09 82.8 25.7 240 389-645 19-313 (322)
271 3nok_A Glutaminyl cyclase; bet 98.4 2.9E-05 1E-09 78.3 21.8 185 389-590 55-254 (268)
272 2p4o_A Hypothetical protein; p 98.4 9.4E-05 3.2E-09 79.4 27.7 231 795-1045 32-279 (306)
273 3mbr_X Glutamine cyclotransfer 98.4 8.7E-05 3E-09 74.3 23.3 188 387-590 19-223 (243)
274 1k3i_A Galactose oxidase precu 98.3 6.2E-05 2.1E-09 90.5 26.7 120 526-646 190-324 (656)
275 3v64_C Agrin; beta propeller, 98.3 0.00099 3.4E-08 72.6 33.7 248 335-609 34-283 (349)
276 1ijq_A LDL receptor, low-densi 98.3 0.0013 4.5E-08 70.6 33.6 238 402-652 3-245 (316)
277 3v64_C Agrin; beta propeller, 98.3 0.00095 3.3E-08 72.8 32.7 249 389-653 34-283 (349)
278 2xbg_A YCF48-like protein; pho 98.3 0.0012 4E-08 71.4 32.9 235 794-1052 79-320 (327)
279 3tc9_A Hypothetical hydrolase; 98.3 0.00022 7.6E-09 80.2 27.8 247 795-1053 137-429 (430)
280 3v65_B Low-density lipoprotein 98.3 0.00065 2.2E-08 75.3 31.2 247 391-653 79-326 (386)
281 2xe4_A Oligopeptidase B; hydro 98.3 0.00013 4.5E-09 88.9 27.3 200 386-599 170-398 (751)
282 3v65_B Low-density lipoprotein 98.2 0.00094 3.2E-08 74.0 31.6 247 336-609 78-326 (386)
283 3qqz_A Putative uncharacterize 98.2 0.00088 3E-08 68.2 28.5 218 830-1052 21-251 (255)
284 4hw6_A Hypothetical protein, I 98.2 0.00027 9.1E-09 79.5 27.1 248 796-1053 140-432 (433)
285 3p5b_L Low density lipoprotein 98.2 0.0021 7.2E-08 71.5 33.6 240 402-654 85-329 (400)
286 2xbg_A YCF48-like protein; pho 98.2 0.0037 1.3E-07 67.4 33.7 280 335-643 36-320 (327)
287 1ijq_A LDL receptor, low-densi 98.2 0.0018 6E-08 69.6 30.7 206 794-1009 29-246 (316)
288 3ott_A Two-component system se 98.0 0.062 2.1E-06 65.6 68.0 566 334-1000 21-625 (758)
289 3qqz_A Putative uncharacterize 98.0 0.0024 8.3E-08 65.0 26.2 205 384-600 22-252 (255)
290 3p5b_L Low density lipoprotein 98.0 0.008 2.7E-07 66.7 32.2 206 794-1009 111-328 (400)
291 3tc9_A Hypothetical hydrolase; 98.0 0.0011 3.8E-08 74.5 24.9 242 390-644 138-429 (430)
292 3sov_A LRP-6, low-density lipo 97.9 0.011 3.7E-07 63.2 31.2 233 409-653 12-246 (318)
293 4hw6_A Hypothetical protein, I 97.9 0.0023 8E-08 71.8 26.2 244 389-644 139-432 (433)
294 3m0c_C LDL receptor, low-densi 97.9 0.012 4.1E-07 70.8 32.7 237 402-652 397-639 (791)
295 3amr_A 3-phytase; beta-propell 97.8 0.0052 1.8E-07 64.8 25.4 194 807-1009 41-272 (355)
296 3kya_A Putative phosphatase; s 97.8 0.0058 2E-07 68.5 27.3 252 796-1056 140-477 (496)
297 3sov_A LRP-6, low-density lipo 97.8 0.01 3.6E-07 63.3 28.0 231 365-609 13-246 (318)
298 2xzh_A Clathrin heavy chain 1; 97.8 0.049 1.7E-06 56.2 35.7 233 798-1056 70-334 (365)
299 3kya_A Putative phosphatase; s 97.7 0.0091 3.1E-07 67.0 26.9 250 390-649 140-479 (496)
300 3amr_A 3-phytase; beta-propell 97.7 0.007 2.4E-07 63.9 24.4 193 449-652 42-271 (355)
301 1bpo_A Protein (clathrin); cla 97.6 0.11 3.6E-06 56.0 34.6 233 798-1056 69-333 (494)
302 3m0c_C LDL receptor, low-densi 97.6 0.035 1.2E-06 66.9 31.6 205 794-1008 423-639 (791)
303 2ism_A Putative oxidoreductase 97.6 0.015 5E-07 63.3 26.0 228 796-1042 32-333 (352)
304 1n7d_A LDL receptor, low-densi 97.6 0.00046 1.6E-08 82.8 14.7 205 795-1009 406-622 (699)
305 2p9w_A MAL S 1 allergenic prot 97.6 0.014 4.7E-07 61.1 23.5 204 793-1000 11-264 (334)
306 1n7d_A LDL receptor, low-densi 97.6 0.00041 1.4E-08 83.2 13.9 234 409-654 385-623 (699)
307 3a9g_A Putative uncharacterize 97.6 0.02 6.8E-07 62.2 26.0 227 795-1042 29-330 (354)
308 2xzh_A Clathrin heavy chain 1; 97.5 0.13 4.5E-06 53.0 29.9 234 339-599 71-330 (365)
309 2g8s_A Glucose/sorbosone dehyd 97.3 0.03 1E-06 60.8 23.9 238 796-1052 19-350 (353)
310 3pbp_A Nucleoporin NUP82; beta 97.3 0.013 4.4E-07 63.0 19.2 111 799-911 25-160 (452)
311 2ism_A Putative oxidoreductase 97.2 0.029 9.8E-07 61.0 22.1 231 389-634 31-334 (352)
312 1bpo_A Protein (clathrin); cla 97.2 0.36 1.2E-05 52.0 33.0 259 546-910 47-332 (494)
313 3sre_A PON1, serum paraoxonase 97.2 0.041 1.4E-06 59.0 22.2 207 390-609 51-308 (355)
314 2vpj_A Kelch-like protein 12; 97.1 0.024 8.3E-07 60.1 19.7 235 399-647 14-280 (301)
315 2p9w_A MAL S 1 allergenic prot 97.0 0.026 8.8E-07 59.0 18.3 168 831-1001 8-215 (334)
316 3ii7_A Kelch-like protein 7; p 97.0 0.034 1.2E-06 59.2 20.4 232 807-1065 13-281 (306)
317 2g8s_A Glucose/sorbosone dehyd 97.0 0.22 7.5E-06 53.9 26.9 237 390-633 19-341 (353)
318 2vpj_A Kelch-like protein 12; 97.0 0.031 1E-06 59.3 19.6 225 815-1064 31-286 (301)
319 3a9g_A Putative uncharacterize 97.0 0.19 6.5E-06 54.4 26.1 230 334-589 28-330 (354)
320 2xn4_A Kelch-like protein 2; s 96.9 0.069 2.4E-06 56.6 21.4 223 815-1063 30-283 (302)
321 2xn4_A Kelch-like protein 2; s 96.9 0.054 1.9E-06 57.4 20.5 192 444-647 61-278 (302)
322 3ii7_A Kelch-like protein 7; p 96.8 0.051 1.7E-06 57.8 19.3 232 402-647 14-274 (306)
323 4asc_A Kelch repeat and BTB do 96.8 0.1 3.5E-06 55.6 21.8 229 813-1066 11-287 (315)
324 3sre_A PON1, serum paraoxonase 96.7 0.33 1.1E-05 51.9 24.5 198 838-1052 52-296 (355)
325 1cru_A Protein (soluble quinop 96.7 0.4 1.4E-05 53.8 26.3 103 796-898 28-163 (454)
326 1zgk_A Kelch-like ECH-associat 96.6 0.093 3.2E-06 55.7 19.3 234 803-1064 22-295 (308)
327 1xi4_A Clathrin heavy chain; a 96.6 0.12 4.2E-06 64.1 21.6 234 799-1056 70-333 (1630)
328 4asc_A Kelch repeat and BTB do 96.5 0.13 4.3E-06 54.9 19.8 225 410-647 13-279 (315)
329 3sbq_A Nitrous-oxide reductase 96.5 0.52 1.8E-05 52.3 23.9 115 794-911 322-480 (638)
330 3das_A Putative oxidoreductase 96.4 1.3 4.4E-05 47.1 29.7 100 796-897 203-326 (347)
331 1tl2_A L10, protein (tachylect 96.4 0.032 1.1E-06 54.1 12.3 142 848-1000 4-162 (236)
332 1tl2_A L10, protein (tachylect 96.4 0.049 1.7E-06 52.8 13.4 144 837-992 42-201 (236)
333 1zgk_A Kelch-like ECH-associat 96.3 0.12 4.2E-06 54.8 18.4 234 398-647 23-289 (308)
334 3pbp_A Nucleoporin NUP82; beta 96.3 0.32 1.1E-05 52.4 20.4 160 887-1056 29-214 (452)
335 2xtc_A F-box-like/WD repeat-co 96.1 0.0049 1.7E-07 49.4 4.1 35 1-35 1-35 (90)
336 2uvk_A YJHT; unknown function, 96.0 0.31 1E-05 53.0 19.9 241 805-1069 19-355 (357)
337 2woz_A Kelch repeat and BTB do 96.0 0.44 1.5E-05 50.7 20.7 224 411-647 25-289 (318)
338 3das_A Putative oxidoreductase 95.9 2.3 8E-05 45.2 29.4 119 325-454 22-158 (347)
339 2be1_A Serine/threonine-protei 95.8 0.043 1.5E-06 58.2 11.3 201 849-1059 11-236 (339)
340 1xi4_A Clathrin heavy chain; a 95.5 1.3 4.5E-05 55.3 23.7 88 546-645 47-134 (1630)
341 2woz_A Kelch repeat and BTB do 95.5 0.84 2.9E-05 48.4 20.4 224 814-1062 23-293 (318)
342 1cru_A Protein (soluble quinop 95.4 2.1 7.1E-05 47.9 23.9 112 879-990 27-163 (454)
343 2uvk_A YJHT; unknown function, 95.2 0.42 1.4E-05 51.8 17.1 242 399-652 19-349 (357)
344 3sbq_A Nitrous-oxide reductase 94.9 1.4 4.9E-05 48.9 19.2 195 804-1002 140-409 (638)
345 1uuj_A Platelet-activating fac 94.7 0.019 6.4E-07 45.7 3.0 56 5-60 10-67 (88)
346 3s25_A Hypothetical 7-bladed b 94.3 5.9 0.0002 41.3 22.7 214 396-646 21-256 (302)
347 2be1_A Serine/threonine-protei 93.8 0.15 5.1E-06 54.1 8.6 194 449-650 12-236 (339)
348 3s25_A Hypothetical 7-bladed b 93.0 9.8 0.00034 39.6 28.5 169 441-635 21-204 (302)
349 3b7f_A Glycosyl hydrolase, BNR 92.6 14 0.00047 40.3 26.4 260 794-1063 54-379 (394)
350 2wg3_C Hedgehog-interacting pr 92.6 15 0.00053 40.8 25.8 56 389-444 14-79 (463)
351 2zwa_A Leucine carboxyl methyl 92.5 5.2 0.00018 47.6 20.5 196 804-1005 396-639 (695)
352 3q6k_A 43.2 kDa salivary prote 91.0 11 0.00036 40.5 18.6 172 815-988 123-341 (381)
353 4hvt_A Ritya.17583.B, post-pro 90.3 34 0.0012 40.4 27.9 248 339-604 133-432 (711)
354 2zwa_A Leucine carboxyl methyl 89.4 9.1 0.00031 45.5 18.5 198 443-647 396-637 (695)
355 3q6k_A 43.2 kDa salivary prote 89.4 25 0.00087 37.6 22.6 170 458-632 124-341 (381)
356 3qhy_B Beta-lactamase inhibito 85.8 33 0.0011 35.0 20.4 183 796-1001 64-246 (282)
357 3qhy_B Beta-lactamase inhibito 84.8 37 0.0013 34.7 21.5 205 365-601 42-246 (282)
358 2j4b_A TAF5, transcription ini 79.1 2.1 7.2E-05 38.3 4.8 53 72-125 33-85 (138)
359 3uc1_A DNA gyrase subunit A; D 79.0 66 0.0023 33.6 25.6 157 794-957 94-278 (327)
360 2wg3_C Hedgehog-interacting pr 77.3 93 0.0032 34.4 29.8 103 796-900 15-160 (463)
361 2nxp_A Transcription initiatio 77.0 3.5 0.00012 37.8 5.7 53 72-124 52-104 (156)
362 3no0_A DNA gyrase subunit A; D 74.5 78 0.0027 32.1 20.2 191 849-1054 36-246 (276)
363 3no0_A DNA gyrase subunit A; D 73.7 81 0.0028 32.0 20.3 195 799-1003 29-248 (276)
364 4gq2_M Nucleoporin NUP120; bet 71.5 12 0.00041 46.1 10.4 40 971-1010 236-275 (950)
365 1zi0_A DNA gyrase subunit A; b 67.6 1.2E+02 0.004 31.3 27.5 151 737-909 108-277 (307)
366 4hvt_A Ritya.17583.B, post-pro 64.5 2.2E+02 0.0076 33.4 28.4 180 815-1004 216-432 (711)
367 2j49_A Transcription initiatio 63.2 2.3 7.8E-05 38.5 1.2 30 72-102 35-64 (148)
368 4gco_A Protein STI-1; structur 62.5 43 0.0015 28.9 9.6 92 21-119 29-125 (126)
369 4gq2_M Nucleoporin NUP120; bet 60.6 99 0.0034 38.0 15.5 38 879-916 236-273 (950)
370 4a9v_A PHOX; hydrolase, beta-p 60.3 26 0.00089 39.5 9.2 60 930-989 477-549 (592)
371 3mkr_A Coatomer subunit epsilo 60.0 88 0.003 31.9 13.1 54 6-59 65-126 (291)
372 3zwu_A Alkaline phosphatase PH 59.4 21 0.00071 40.8 8.5 59 930-988 477-548 (592)
373 3l6v_A GYRA, DNA gyrase subuni 59.3 1.8E+02 0.0063 30.8 27.1 65 579-644 4-75 (370)
374 3kci_A Probable E3 ubiquitin-p 58.8 1.9E+02 0.0066 30.9 25.6 194 797-1001 107-345 (389)
375 3lpz_A GET4 (YOR164C homolog); 55.5 36 0.0012 35.4 8.7 110 38-187 16-129 (336)
376 2wpv_A GET4, UPF0363 protein Y 54.9 39 0.0013 34.9 8.9 110 38-187 17-127 (312)
377 1zi0_A DNA gyrase subunit A; b 52.8 2.1E+02 0.0071 29.4 25.8 236 398-644 1-276 (307)
378 3uc1_A DNA gyrase subunit A; D 51.1 2.3E+02 0.0079 29.4 25.1 197 802-1004 50-282 (327)
379 3mez_B Mannose-specific lectin 50.2 62 0.0021 27.4 8.1 59 932-1001 26-84 (113)
380 1wp5_A Topoisomerase IV; broke 48.6 2.5E+02 0.0085 29.1 24.7 238 804-1054 3-277 (323)
381 2k9m_A RNA polymerase sigma fa 46.1 27 0.00094 30.6 5.2 91 2-104 18-122 (130)
382 3b7f_A Glycosyl hydrolase, BNR 45.8 3E+02 0.01 29.2 34.1 263 388-664 54-390 (394)
383 2vgx_A Chaperone SYCD; alterna 45.7 84 0.0029 27.9 8.9 16 45-60 66-81 (148)
384 4ga2_A E3 SUMO-protein ligase 45.1 1.6E+02 0.0055 26.0 10.9 94 21-121 13-111 (150)
385 3zwu_A Alkaline phosphatase PH 44.1 71 0.0024 36.5 9.6 64 523-588 477-548 (592)
386 3f7f_A Nucleoporin NUP120; nuc 43.4 2.3E+02 0.008 32.9 13.7 35 838-875 224-258 (729)
387 2lni_A Stress-induced-phosphop 41.9 1.2E+02 0.0041 25.4 9.3 87 9-101 20-111 (133)
388 2cn3_A Xyloglucanase, beta-1,4 41.2 5E+02 0.017 30.5 22.1 218 837-1064 24-291 (737)
389 4fhn_B Nucleoporin NUP120; pro 40.9 12 0.0004 47.5 2.8 40 972-1011 239-278 (1139)
390 1sqj_A OXG-RCBH, oligoxylogluc 39.9 5.4E+02 0.019 30.5 24.3 61 794-855 14-83 (789)
391 4fhn_B Nucleoporin NUP120; pro 39.5 85 0.0029 39.6 10.4 37 837-874 239-275 (1139)
392 3upv_A Heat shock protein STI1 38.4 94 0.0032 26.2 7.9 81 15-101 14-99 (126)
393 4a9v_A PHOX; hydrolase, beta-p 38.2 1.3E+02 0.0045 33.9 10.2 65 523-589 477-549 (592)
394 3mkr_A Coatomer subunit epsilo 37.4 1.7E+02 0.0058 29.7 10.8 13 47-59 78-90 (291)
395 2xcb_A PCRH, regulatory protei 37.3 1.3E+02 0.0043 26.2 8.7 14 46-59 30-43 (142)
396 1suu_A DNA gyrase subunit A; t 35.9 3.8E+02 0.013 27.5 27.5 237 805-1052 7-281 (312)
397 2kck_A TPR repeat; tetratricop 35.2 56 0.0019 26.5 5.7 85 14-102 14-105 (112)
398 1elr_A TPR2A-domain of HOP; HO 35.1 1.4E+02 0.0048 24.8 8.6 93 10-102 8-107 (131)
399 1vk8_A Hypothetical protein TM 35.0 4.6 0.00016 33.9 -1.5 37 23-60 36-72 (106)
400 2d68_A FOP, FGFR1OP; alpha hel 34.2 39 0.0013 26.6 3.7 28 8-35 21-48 (82)
401 3sz7_A HSC70 cochaperone (SGT) 34.1 1E+02 0.0035 27.6 7.8 86 9-100 14-105 (164)
402 3u4t_A TPR repeat-containing p 33.7 1.2E+02 0.004 30.0 8.9 110 7-120 4-119 (272)
403 3gyz_A Chaperone protein IPGC; 33.3 1.1E+02 0.0036 27.5 7.4 86 7-104 10-102 (151)
404 1suu_A DNA gyrase subunit A; t 31.9 4.3E+02 0.015 27.0 28.5 199 736-958 6-231 (312)
405 1elw_A TPR1-domain of HOP; HOP 31.3 2E+02 0.007 23.0 9.3 88 9-102 8-100 (118)
406 3q49_B STIP1 homology and U bo 31.1 1.5E+02 0.005 25.2 8.0 88 7-100 10-103 (137)
407 2xz2_A CSTF-50, isoform B; RNA 30.8 60 0.002 24.1 3.9 31 4-34 15-45 (66)
408 2cn3_A Xyloglucanase, beta-1,4 30.5 7.2E+02 0.025 29.1 36.9 62 571-633 23-91 (737)
409 3qou_A Protein YBBN; thioredox 30.1 2.3E+02 0.0079 28.5 10.4 99 16-121 128-231 (287)
410 4asv_A Small glutamine-rich te 29.2 31 0.001 27.7 2.4 19 1-19 15-33 (92)
411 3bu8_A Telomeric repeat-bindin 28.7 1E+02 0.0035 29.3 6.2 101 68-189 108-209 (235)
412 4gcn_A Protein STI-1; structur 28.3 1.5E+02 0.005 25.3 7.3 101 15-117 17-124 (127)
413 1kdl_A YOPD protein; yersinia, 28.0 33 0.0011 19.7 1.6 16 4-19 3-18 (26)
414 2ho1_A Type 4 fimbrial biogene 27.4 2.7E+02 0.0092 26.8 10.2 17 44-60 81-97 (252)
415 2ho1_A Type 4 fimbrial biogene 27.3 4.1E+02 0.014 25.3 11.6 109 7-120 72-186 (252)
416 1wp5_A Topoisomerase IV; broke 26.8 5.4E+02 0.018 26.5 26.1 194 398-601 3-225 (323)
417 3l6v_A GYRA, DNA gyrase subuni 26.1 6E+02 0.02 26.8 26.3 109 397-510 4-132 (370)
418 2vyi_A SGTA protein; chaperone 25.9 2.7E+02 0.0093 22.7 9.6 86 10-101 16-107 (131)
419 4h3o_A Lectin; cadmium, plant 25.9 2.8E+02 0.0096 22.9 10.9 26 798-824 53-78 (105)
420 1na0_A Designed protein CTPR3; 25.9 2.6E+02 0.009 22.6 9.1 99 12-117 15-119 (125)
421 3f7f_A Nucleoporin NUP120; nuc 25.8 83 0.0029 36.6 6.2 37 972-1010 223-259 (729)
422 2fo7_A Synthetic consensus TPR 25.6 2.7E+02 0.0094 22.8 8.8 99 15-120 11-114 (136)
423 4ga2_A E3 SUMO-protein ligase 25.2 1.3E+02 0.0045 26.6 6.6 103 12-121 37-146 (150)
424 2fo7_A Synthetic consensus TPR 25.1 2.3E+02 0.008 23.3 8.2 86 10-101 39-130 (136)
425 3iug_A RHO/CDC42/RAC GTPase-ac 24.9 67 0.0023 31.5 4.7 89 8-104 40-141 (229)
426 2k9l_A RNA polymerase sigma fa 24.6 57 0.002 25.3 3.3 35 3-37 28-63 (76)
427 3u4t_A TPR repeat-containing p 24.5 3.7E+02 0.013 26.0 10.8 16 45-60 119-134 (272)
428 3vtx_A MAMA; tetratricopeptide 24.4 2.6E+02 0.0088 25.3 8.9 49 12-60 11-65 (184)
429 2ion_A PDCD4, programmed cell 24.3 1E+02 0.0036 27.8 5.4 19 81-99 16-34 (152)
430 1oyi_A Double-stranded RNA-bin 24.1 49 0.0017 26.1 2.7 30 6-37 16-45 (82)
431 4gof_A Small glutamine-rich te 23.6 38 0.0013 24.0 1.8 16 4-19 1-16 (52)
432 2ibo_A Hypothetical protein SP 23.2 8.2 0.00028 32.3 -2.0 35 25-60 25-59 (104)
433 2dah_A Ubiquilin-3; UBA domain 23.1 87 0.003 22.4 3.7 18 13-30 13-33 (54)
434 2ovj_A Mgcracgap, RAC GTPase-a 23.1 58 0.002 31.1 3.8 90 8-104 20-120 (201)
435 2pl2_A Hypothetical conserved 22.9 2.4E+02 0.0082 26.7 8.5 111 1-119 34-161 (217)
436 3as5_A MAMA; tetratricopeptide 22.9 2.9E+02 0.0098 24.5 8.9 105 8-119 10-120 (186)
437 2nsz_A Programmed cell death p 22.8 1.2E+02 0.0041 26.4 5.4 19 81-99 14-32 (129)
438 4gco_A Protein STI-1; structur 22.6 1.3E+02 0.0043 25.7 5.7 72 43-121 22-93 (126)
439 4gyw_A UDP-N-acetylglucosamine 22.6 5.2E+02 0.018 30.3 12.6 110 5-121 8-123 (723)
440 2qfc_A PLCR protein; TPR, HTH, 22.5 2.8E+02 0.0097 27.8 9.4 94 7-101 77-182 (293)
441 1lxj_A YBL001C, hypothetical 1 22.4 8.4 0.00029 32.3 -2.1 39 21-60 25-63 (104)
442 1yqh_A DUF77, IG hypothetical 22.4 9.9 0.00034 32.1 -1.6 36 24-60 29-64 (109)
443 2bwb_A Ubiquitin-like protein 21.4 1.2E+02 0.004 20.8 3.9 21 10-30 8-31 (46)
444 3uq3_A Heat shock protein STI1 21.1 2.3E+02 0.0077 27.3 8.1 93 21-120 121-218 (258)
445 2lni_A Stress-induced-phosphop 21.0 1.7E+02 0.0058 24.4 6.4 72 42-120 24-95 (133)
446 1hxi_A PEX5, peroxisome target 21.0 1.4E+02 0.0049 25.1 5.7 72 42-120 25-96 (121)
447 2q7f_A YRRB protein; TPR, prot 20.9 2.3E+02 0.0078 27.0 8.0 106 7-119 92-203 (243)
448 4b4t_R RPN7, 26S proteasome re 20.6 2E+02 0.007 31.2 8.0 111 11-121 136-261 (429)
449 2ee4_A RHO GTPase activating p 20.5 1.1E+02 0.0036 29.5 5.1 105 8-119 30-145 (209)
450 3urz_A Uncharacterized protein 20.4 3.2E+02 0.011 25.5 8.8 107 6-119 5-132 (208)
451 1a17_A Serine/threonine protei 20.3 1.5E+02 0.0051 26.1 6.1 89 7-99 48-142 (166)
452 2dba_A Smooth muscle cell asso 20.3 3.9E+02 0.013 22.5 10.2 82 14-101 37-126 (148)
453 4b4t_P 26S proteasome regulato 20.2 1.8E+02 0.0062 31.9 7.5 94 7-101 138-245 (445)
454 1na3_A Designed protein CTPR2; 20.1 1.8E+02 0.0062 22.1 5.9 69 43-118 18-86 (91)
455 3byi_A RHO GTPase activating p 20.1 77 0.0026 30.6 4.0 90 8-104 38-139 (214)
456 3hym_B Cell division cycle pro 20.0 4.3E+02 0.015 26.4 10.4 34 85-119 170-203 (330)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=3.5e-68 Score=642.22 Aligned_cols=568 Identities=22% Similarity=0.348 Sum_probs=483.2
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+.|+||++.|++++|||||++||+++.| ++|+|||.. +... ..+.+|...|++++|||||++||+
T Consensus 8 e~~~L~GH~~~V~~~a~spdg~~las~~~d---------~~v~iWd~~-~~~~---~~l~gh~~~V~~l~fspdg~~las 74 (577)
T 2ymu_A 8 ERNRLEAHSSSVRGVAFSPDGQTIASASDD---------KTVKLWNRN-GQLL---QTLTGHSSSVWGVAFSPDGQTIAS 74 (577)
T ss_dssp EEEEECCCSSCEEEEEECTTSSCEEEEETT---------SEEEEECTT-SCEE---EEEECCSSCEEEEEECTTSSEEEE
T ss_pred EeeEECCCCCcEEEEEECCCCCEEEEEeCC---------CEEEEEECC-CCEE---EEEeCCCCCEEEEEECCCCCEEEE
Confidence 346799999999999999999999999887 999999964 3322 237899999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
++.|++|+|||+. ++.+ ..+.+|...|.+++|+|+++ ++++++.|+.+++|+.. +.......+|...|..+.+
T Consensus 75 ~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~~v~~~~~ 147 (577)
T 2ymu_A 75 ASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAF 147 (577)
T ss_dssp EETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSSCEEEEEE
T ss_pred EeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCCceeeeee
Confidence 9999999999975 4433 37889999999999999999 89999999999999954 4556677889999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
.+ ++..+++++.++.+++|+... ........+...+.+++++|+++++++++. ++.|++||. +++.+..+.+
T Consensus 148 ~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~~~~~ 219 (577)
T 2ymu_A 148 SP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTG 219 (577)
T ss_dssp CT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEEEEEC
T ss_pred ec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEEEEec
Confidence 55 667899999999999998543 445566677889999999999999999986 677999995 5778888888
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|. ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+. ..|.+++|+|+++.+++++.|+.|++|+...
T Consensus 220 ~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~~--~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~ 293 (577)
T 2ymu_A 220 HS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS--SSVNGVAFRPDGQTIASASDDKTVKLWNRNG 293 (577)
T ss_dssp CS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred CC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecCC--CCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC
Confidence 87 89999999999999999999999999996 567777777654 4699999999999999999999999999643
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
+.+..+. +|
T Consensus 294 -~~~~~~~----------------------------------------------------------------------~h 302 (577)
T 2ymu_A 294 -QLLQTLT----------------------------------------------------------------------GH 302 (577)
T ss_dssp -CEEEEEC----------------------------------------------------------------------CC
T ss_pred -cEEEEEe----------------------------------------------------------------------cC
Confidence 2222222 25
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
...|.+++|+|+++.+++++.||.+++|+..... +.. +. +|...+.+++|+|+
T Consensus 303 ~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~--~~--~~~~~v~~~~~s~~ 355 (577)
T 2ymu_A 303 SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQT--LT--GHSSSVWGVAFSPD 355 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEE--EC--CCSSCEEEEEECTT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEE--Ee--CCCCCEEEEEECCC
Confidence 5678888999999999999999999999854321 111 11 37889999999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 884 (1084)
|+++++++ ++.+++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|+++
T Consensus 356 g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~ 432 (577)
T 2ymu_A 356 GQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGV 432 (577)
T ss_dssp SSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEE
T ss_pred CCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEE
Confidence 99999998 799999995 5788889999999999999999 8999999999999999995 578889999999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEcCCcceee
Q 001403 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLK 963 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~ 963 (1084)
+|+||+++|++++.|++|++||.... .+....+|.. .|.+++|+||+++||+ +.|+.|++||. +++++.
T Consensus 433 ~~s~d~~~l~~~~~d~~v~~w~~~~~------~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~ 502 (577)
T 2ymu_A 433 AFSPDDQTIASASDDKTVKLWNRNGQ------LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQ 502 (577)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTSC------EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEE
T ss_pred EECCCCCEEEEEcCCCEEEEEECCCC------EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEE
Confidence 99999999999999999999997642 2333445544 7999999999999999 57899999995 577777
Q ss_pred EeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeC
Q 001403 964 QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLT 1043 (1084)
Q Consensus 964 ~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~ 1043 (1084)
. +.+|...|++++|+|||++|++++.||.|++||. +++.+..+.. |.+.|. +++|+| |+.+|++++.
T Consensus 503 ~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~--------h~~~v~--~~~fs~-dg~~l~s~~~ 569 (577)
T 2ymu_A 503 T-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG--------HSSSVW--GVAFSP-DGQTIASASS 569 (577)
T ss_dssp E-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC--------CSSCEE--EEEECT-TSSCEEEEET
T ss_pred E-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC--------CCCCEE--EEEEcC-CCCEEEEEeC
Confidence 6 5589999999999999999999999999999996 5677666551 345565 678999 6899999999
Q ss_pred CCcEEEEc
Q 001403 1044 NGEVYVIE 1051 (1084)
Q Consensus 1044 dg~v~vw~ 1051 (1084)
||+|++||
T Consensus 570 D~~i~~Wd 577 (577)
T 2ymu_A 570 DKTVKLWN 577 (577)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1.8e-66 Score=627.41 Aligned_cols=576 Identities=14% Similarity=0.190 Sum_probs=476.0
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.+.+.+.+++|||||++||++. + ++|+||++.++.... .+.+|...|++++|||||++||+|+.|++
T Consensus 16 ~~~g~~~~~~~spdg~~l~~~~-~---------~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~~lasg~~d~~ 82 (611)
T 1nr0_A 16 TARGTAVVLGNTPAGDKIQYCN-G---------TSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGYYCASGDVHGN 82 (611)
T ss_dssp CCTTCCCCCEECTTSSEEEEEE-T---------TEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred cccCceeEEeeCCCCCEEEeCC-C---------CEEEEecCCCcccCe---EecCCCCceEEEEECCCCcEEEEEeCCCC
Confidence 4567889999999999999974 3 789999998655432 37899999999999999999999999999
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| ++..+..+.+|...|.+++|+|
T Consensus 83 v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p 157 (611)
T 1nr0_A 83 VRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKP 157 (611)
T ss_dssp EEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECS
T ss_pred EEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECC
Confidence 9999998665332 236779999999999999999 67777754 3667776 6777888999999999999966
Q ss_pred cCCCc-EEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee--
Q 001403 488 KENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-- 564 (1084)
Q Consensus 488 ~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-- 564 (1084)
++. .|++++.|++|++||....+....+..|...|.+++|+|||++|++++. ++.|++||..+++.+..+.
T Consensus 158 --~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~~~~~~ 231 (611)
T 1nr0_A 158 --SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGVFEDD 231 (611)
T ss_dssp --SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEECBCT
T ss_pred --CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEeeeeccc
Confidence 444 6999999999999999888778888999999999999999999999986 6679999999999888874
Q ss_pred -----ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC-CCcceEEEecCCCEEEEEECCCeE
Q 001403 565 -----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 565 -----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
+|. +.|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.| ++..+++++.|+.+
T Consensus 232 ~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i 306 (611)
T 1nr0_A 232 SLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFI 306 (611)
T ss_dssp TSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCE
T ss_pred cccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcE
Confidence 565 89999999999999999999999999999999999888654221 12334445 78899999999999
Q ss_pred EEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 639 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
++|+...++....+.+|...|.+++++ |+++++++++.|+++++||+..+...
T Consensus 307 ~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~~~~----- 359 (611)
T 1nr0_A 307 NFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTGISN----- 359 (611)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTCCEE-----
T ss_pred EEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCCcee-----
Confidence 999999988888889999999999997 67889999999999999998743221
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
......|...|.+++|++++ .+++++.|+.+++|+.......... ..... ......
T Consensus 360 ~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~------------------~~~~~-----~~~~~~ 415 (611)
T 1nr0_A 360 RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK------------------AVANK-----LSSQPL 415 (611)
T ss_dssp ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS------------------CCEEE-----CSSCEE
T ss_pred eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc------------------eeeee-----cCCCCc
Confidence 11224588899999999776 5889999999999987643211000 00000 233467
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee--eeeecc
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG 876 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~--~~~l~~ 876 (1084)
+++++|+|+.++++.++.+++|+ .++ +..+. +...+.+++|+| |+++||+|+.|++|++||+.+++. +.. .+
T Consensus 416 ~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~~~~~~-~~ 489 (611)
T 1nr0_A 416 GLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKT-IV 489 (611)
T ss_dssp EEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEEEEEEE-EE
T ss_pred EEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCceeeeec-cC
Confidence 89999999999888899999999 344 45554 778899999999 899999999999999999987653 334 67
Q ss_pred cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEE
Q 001403 877 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIY 954 (1084)
Q Consensus 877 h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vw 954 (1084)
|...|++++|+|||++|++++.|++|++||+.+ ++... .....+|.. .|.+++|+|||++||+ +.|++|++|
T Consensus 490 h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~~---~V~~v~fspdg~~lasgs~D~~v~lW 563 (611)
T 1nr0_A 490 HPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHTA---KVACVSWSPDNVRLATGSLDNSVIVW 563 (611)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCSS---CEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred CCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeeccc---ceeEEEECCCCCEEEEEECCCcEEEE
Confidence 999999999999999999999999999999987 33211 001223544 8999999999999999 589999999
Q ss_pred EcCCcceee-EeecCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 955 EAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 955 d~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
|+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus 564 ~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 564 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred ECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999876433 456789 89999999999998 9999999999999974
No 3
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=100.00 E-value=2.3e-63 Score=600.13 Aligned_cols=557 Identities=22% Similarity=0.347 Sum_probs=473.4
Q ss_pred cCCCCCCCCcchhhhcccccCCCccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 295 ~s~~~fsP~~s~~~~~f~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
..++.|||+++.+...-. .....+++...+++++|.+|.+.|++++|||||++||+++.| ++|+|||...
T Consensus 19 V~~~a~spdg~~las~~~-d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~~las~~~d---------~~i~vWd~~~ 88 (577)
T 2ymu_A 19 VRGVAFSPDGQTIASASD-DKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDD---------KTVKLWNRNG 88 (577)
T ss_dssp EEEEEECTTSSCEEEEET-TSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTS
T ss_pred EEEEEECCCCCEEEEEeC-CCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCCEEEEEeCC---------CEEEEEECCC
Confidence 457899999988765422 223344556678899999999999999999999999999887 9999999753
Q ss_pred ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 375 CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 375 ~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
... ..+.+|...|.+++|+|||++|++++.|+.+++|+..... .....+|...|.++.|+|++. .+++++
T Consensus 89 -~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--~~~~~~ 158 (577)
T 2ymu_A 89 -QLL---QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--TIASAS 158 (577)
T ss_dssp -CEE---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--CEEEEE
T ss_pred -CEE---EEEECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--cceecc
Confidence 222 2378899999999999999999999999999999987643 225678999999999999999 788999
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR 534 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~ 534 (1084)
.++.+++|+. .+........|...|.++.+.+ ++.++++++.||.|++||. +.+....+..+...+.+++|+|+++
T Consensus 159 ~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~ 234 (577)
T 2ymu_A 159 DDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQ 234 (577)
T ss_dssp TTSEEEEECT-TSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSS
T ss_pred cccceecccc-ceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCC
Confidence 9999999994 5556677788999999999954 6789999999999999995 4566677888899999999999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++++. ++.|++||. +++.+..+.+|. ..|.+++|+|+++.+++++.|+.|++||. +++.+..+..+.
T Consensus 235 ~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~~~h~-- 303 (577)
T 2ymu_A 235 TIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHS-- 303 (577)
T ss_dssp CEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEECCCS--
T ss_pred EEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEEecCC--
Confidence 9999876 667999996 567778888887 89999999999999999999999999996 467777777654
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
..|.+++|+|+++++++++.|+.|++|+.... .+..+.
T Consensus 304 ~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~-~~~~~~----------------------------------------- 341 (577)
T 2ymu_A 304 SSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-HLQTLT----------------------------------------- 341 (577)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTSC-EEEEEC-----------------------------------------
T ss_pred CCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC-eeEEEe-----------------------------------------
Confidence 46999999999999999999999999997643 221111
Q ss_pred eecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCee
Q 001403 695 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 774 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~ 774 (1084)
.|...+.+++|+|+|+.+++++.+|.+++|+....
T Consensus 342 -----------------------------~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~---------------- 376 (577)
T 2ymu_A 342 -----------------------------GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ---------------- 376 (577)
T ss_dssp -----------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------------
T ss_pred -----------------------------CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------------
Confidence 15567888999999999999999999999984321
Q ss_pred ecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 775 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
.+.. +. +|...|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++
T Consensus 377 -------~~~~--~~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~ 443 (577)
T 2ymu_A 377 -------LLQT--LT--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIAS 443 (577)
T ss_dssp -------EEEE--EE--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEE
T ss_pred -------EEEE--ec--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEE
Confidence 1111 11 3788999999999999999998 799999995 5788889999999999999999 8999999
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
++.|+.|++||. +++.+..+.+|...|++++|+||+++|++++.|++|++||... + ++....+|.. .|++
T Consensus 444 ~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~---~v~~ 513 (577)
T 2ymu_A 444 ASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRG 513 (577)
T ss_dssp EETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEE
T ss_pred EcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC---CEEE
Confidence 999999999996 5778889999999999999999999999999999999999653 2 3444556654 8999
Q ss_pred EEEccCCCEEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEE
Q 001403 934 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 998 (1084)
Q Consensus 934 ~~~s~dg~~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd 998 (1084)
++|+|||++||+ +.|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus 514 l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 514 VAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 999999999999 57899999996 5777776 558999999999999999999999999999997
No 4
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=100.00 E-value=1e-63 Score=603.39 Aligned_cols=570 Identities=11% Similarity=0.109 Sum_probs=455.2
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+.+.+.+++|||||++||+++ ++.|++|++.+++... .+.+|...|++++|+|||+ +|++|+.|++|+|||+.+
T Consensus 17 ~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~~~ 90 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDTTQ 90 (611)
T ss_dssp CTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEESSS
T ss_pred ccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeECCC
Confidence 567888999999999999998 4689999998876554 7889999999999999999 899999999999999976
Q ss_pred Cc--eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCC-EEEEE
Q 001403 467 GS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSC 539 (1084)
Q Consensus 467 g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~ 539 (1084)
++ ....+.+|.++|.+++|+| +++.|++++.+ +.|++|| .+.....+..|...|.+++|+|++. .|+++
T Consensus 91 ~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~ 166 (611)
T 1nr0_A 91 TTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRIISG 166 (611)
T ss_dssp TTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEEEE
T ss_pred CcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEEEE
Confidence 54 4567889999999999955 67899988865 3677775 5566667888999999999999997 58888
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----CCC
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGL 614 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~ 614 (1084)
+. ++.|++||..+++....+.+|. ..|.+++|+|++++|++++.|++|++||..+++.+..+... ++.
T Consensus 167 s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~ 239 (611)
T 1nr0_A 167 SD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS 239 (611)
T ss_dssp ET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS
T ss_pred eC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccC
Confidence 76 6679999999999999999988 89999999999999999999999999999999998887421 334
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc---cceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS---DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
..|.+++|+|++++|++++.|++|++||+.+++.+..+..+. .....+. .++.
T Consensus 240 ~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~ 295 (611)
T 1nr0_A 240 GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WTKQ 295 (611)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------ECSS
T ss_pred CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------EcCC
Confidence 579999999999999999999999999999987776654321 1111111 2467
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
.+++++.|+.+++|+...... . ....+|...|.+++|+|+|++|++++.|+.|++|++..+..
T Consensus 296 ~l~s~s~d~~i~~~~~~~~~~---~---~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~----------- 358 (611)
T 1nr0_A 296 ALVSISANGFINFVNPELGSI---D---QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS----------- 358 (611)
T ss_dssp CEEEEETTCCEEEEETTTTEE---E---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----------
T ss_pred EEEEEeCCCcEEEEeCCCCCc---c---eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce-----------
Confidence 899999999999999763321 1 11235889999999999999999999999999998754321
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE---EcCCCCCeEEEEEcCCCC
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~ 848 (1084)
.... ..+|...|.+++|++++.++..+.|+.+++|++.++..... .........+++|+| ++
T Consensus 359 -----------~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg 423 (611)
T 1nr0_A 359 -----------NRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DG 423 (611)
T ss_dssp -----------EECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TS
T ss_pred -----------eeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CC
Confidence 1111 11488899999999887655555589999999876543210 001234567899999 78
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
++++++ .++.+++|+ .++ +..+. |...+.+++|+|||++||+|+.|++|++||+.++.... +.. .+|..
T Consensus 424 ~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~~-- 492 (611)
T 1nr0_A 424 DIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHPA-- 492 (611)
T ss_dssp SCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECSS--
T ss_pred cEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCCC--
Confidence 777766 467899998 344 55554 88899999999999999999999999999998754322 122 33443
Q ss_pred CCceEEEEccCCCEEEE-EeCCeEEEEEcCC-cceeeE-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 929 PSETHIQFHKDQTRFLL-VHETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~-~~d~~i~vwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.|.+++|||||++||+ +.|++|++|++.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++...
T Consensus 493 -~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~ 571 (611)
T 1nr0_A 493 -EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 571 (611)
T ss_dssp -CEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred -ceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccc
Confidence 7999999999999999 5789999999987 665544 34459999999999999999999999999999999987532
Q ss_pred E-EeccccccCCCCc-ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1006 C-RILSTAYLRPTTS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1006 ~-~~~~~~~~~~~~~-~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
. ... .+ | ...|. +++|+| |+. |++|+.||+|++|++
T Consensus 572 ~~~~~------~~-h~~~~v~--~v~fs~-d~~-l~s~~~D~~i~lW~~ 609 (611)
T 1nr0_A 572 PIIIK------GA-HAMSSVN--SVIWLN-ETT-IVSAGQDSNIKFWNV 609 (611)
T ss_dssp CEEET------TS-STTSCEE--EEEEEE-TTE-EEEEETTSCEEEEEC
T ss_pred cchhh------cc-CcccCee--EEEEcC-CCE-EEEecCCCCEEEEec
Confidence 1 111 11 2 34455 678888 466 999999999999998
No 5
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=1.2e-64 Score=667.68 Aligned_cols=661 Identities=14% Similarity=0.163 Sum_probs=530.0
Q ss_pred cccccccCccccCCCCCCCCcchhhhcccc-------cCCCccCC-----CccceeeecccCCCCceEEEEcCCCceeee
Q 001403 284 ASTVTYPGVSLKNIPDYSPKSSLKKEMFQS-------FGETSFSD-----FPKTVAQTLIEGSSSPMSMDFHPVQHTLLL 351 (1084)
Q Consensus 284 ~~~~~~p~~~~~s~~~fsP~~s~~~~~f~~-------~~~~~~~~-----~p~~~~~~l~~h~~~V~~v~~spdg~~las 351 (1084)
......|.+.+.....+.|..+.+...+.. .+...... ........+.+|.+.|++++|||||++||+
T Consensus 553 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s 632 (1249)
T 3sfz_A 553 HLLGRQPFPNIVQLGLCEPETSEVYRQAKLQAKQEGDTGRLYLEWINKKTIKNLSRLVVRPHTDAVYHACFSQDGQRIAS 632 (1249)
T ss_dssp TTTTSSSCCCHHHHHHTSCTTSHHHHHHHHHHHTTCSSSCCCCCCGGGTTCSCCCSEEECCCSSCEEEEEECTTSSEEEE
T ss_pred eeeeccccccceeeecCCCCcchHHHHHhhhcccCCCCCeEEEEEccCccccccceEEEecccccEEEEEECCCCCEEEE
Confidence 334566777666666667777655433321 11111111 112345577899999999999999999999
Q ss_pred ecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeec
Q 001403 352 GLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA 431 (1084)
Q Consensus 352 ~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~ 431 (1084)
++.| ++|+|||+.++..... +.+|...|.+++|+|||++||+++.|++|+|||+.+++.+. .+.+
T Consensus 633 ~~~d---------~~i~vw~~~~~~~~~~---~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~ 697 (1249)
T 3sfz_A 633 CGAD---------KTLQVFKAETGEKLLD---IKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVH---TYDE 697 (1249)
T ss_dssp EETT---------SCEEEEETTTCCEEEE---ECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEEC
T ss_pred EeCC---------CeEEEEECCCCCEEEE---eccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEE---EEcC
Confidence 9888 9999999998765543 67899999999999999999999999999999999997665 7789
Q ss_pred ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC
Q 001403 432 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL 511 (1084)
Q Consensus 432 h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~ 511 (1084)
|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.+.|.+++|++ ++.++++++.||.|++||+.+.
T Consensus 698 ~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~ 775 (1249)
T 3sfz_A 698 HSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP--DDELLASCSADGTLRLWDVRSA 775 (1249)
T ss_dssp CSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS--STTEEEEEESSSEEEEEEGGGT
T ss_pred CCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec--CCCEEEEEECCCeEEEEeCCCC
Confidence 99999999999976555899999999999999999999999999999999999965 6789999999999999999887
Q ss_pred CceEeecC-------------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-ccccccCceEEEE
Q 001403 512 GARVDYDA-------------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVH 577 (1084)
Q Consensus 512 ~~~~~~~~-------------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~ 577 (1084)
.....+.. ....+.+++|+|+|+.+++++ ++.+.+||..++.....+. +|. ..+.+++
T Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~ 847 (1249)
T 3sfz_A 776 NERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KNKVLLFDIHTSGLLAEIHTGHH---STIQYCD 847 (1249)
T ss_dssp EEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TTEEEEEETTTCCEEEEEECSSS---SCCCEEE
T ss_pred cccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CCcEEEEEecCCCceeEEcCCCC---CceEEEE
Confidence 66554432 123678899999999999986 4569999999998887776 455 8899999
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD 657 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 657 (1084)
|+|+++.+++++.||.|++||+.++..+..+..+.. .|.+++|+|+++++++++.||.|++|++.+......... .
T Consensus 848 ~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~ 923 (1249)
T 3sfz_A 848 FSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLS--WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL--K 923 (1249)
T ss_dssp ECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--E
T ss_pred EcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCcc--ceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecc--c
Confidence 999999999999999999999999999999886654 699999999999999999999999999874322211110 0
Q ss_pred ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecC
Q 001403 658 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG 737 (1084)
Q Consensus 658 ~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~ 737 (1084)
......+. +++..++.....+.+.++...... ... .+...+.+++++|+
T Consensus 924 ~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~i~~~~~sp~ 972 (1249)
T 3sfz_A 924 QEIDVVFQ----------------------ENETMVLAVDNIRGLQLIAGKTGQ---IDY------LPEAQVSCCCLSPH 972 (1249)
T ss_dssp EEEEEEEE----------------------TTEEEEEEEESSSSEEEEEESSCC---EEE------ECCSCEEEEEECTT
T ss_pred ceeeEEEc----------------------CCCcEEEEecCCcceEEEecCcce---EEE------cccCcEEEEEEcCC
Confidence 01111121 223333333444444444432111 111 13467999999999
Q ss_pred CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCe
Q 001403 738 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV 816 (1084)
Q Consensus 738 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~ 816 (1084)
++.+++++.+|.+.+|++..+.. ... + .+|...|.+++|+|+|+++++++ ||.
T Consensus 973 g~~l~~g~~~g~i~i~d~~~~~~----------------------~~~--~--~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 973 LEYVAFGDEDGAIKIIELPNNRV----------------------FSS--G--VGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp SSEEEEEETTSCCEEEETTTTSC----------------------EEE--C--CCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred CCEEEEEcCCCCEEEEEcCCCce----------------------eee--c--ccCCCceEEEEECCCCCEEEEEcCCCE
Confidence 99999999999999998754321 111 1 14889999999999999999998 799
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEE
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS 896 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~ 896 (1084)
|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++||+.+++.+..+.+|.+.|++++|+||+++|+++
T Consensus 1027 i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~ 1103 (1249)
T 3sfz_A 1027 IQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSST 1103 (1249)
T ss_dssp EEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECSSSSSCEEE
T ss_pred EEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECCCCCEEEEE
Confidence 9999999988764 557889999999999 65 56789999999999999999999999999999999999999999999
Q ss_pred eCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEe--------ec
Q 001403 897 GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW--------FP 967 (1084)
Q Consensus 897 s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~--------~~ 967 (1084)
+.||+|++||+.+++ .+....+|.. .|++++|+|||++||++ .||.|++||+.+++.+..+ ..
T Consensus 1104 s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1175 (1249)
T 3sfz_A 1104 SADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTA 1175 (1249)
T ss_dssp CCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCCCC------
T ss_pred cCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecccccccccc
Confidence 999999999999865 4455566655 89999999999999995 7899999999999887654 24
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcE
Q 001403 968 ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1047 (1084)
Q Consensus 968 ~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1047 (1084)
+|...|++++|||||++|++++ |.|++||+.+++.+..+.. |...+. +++|+| |+.+|++++.||.|
T Consensus 1176 ~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~--------~~~~i~--~~~~s~-dg~~l~~~~~dg~v 1242 (1249)
T 3sfz_A 1176 THGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT--------NGTNLK--KIHVSP-DFRTYVTVDNLGIL 1242 (1249)
T ss_dssp -CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC--------SSCCCC--CCEECS-SSCCEEEECTTCCE
T ss_pred ccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec--------cCCccc--EEEECC-CCCEEEEecCCcEE
Confidence 6899999999999999999885 8999999999988755441 233344 578999 58999999999999
Q ss_pred EEEcCCC
Q 001403 1048 YVIEPNE 1054 (1084)
Q Consensus 1048 ~vw~~~~ 1054 (1084)
++|++.+
T Consensus 1243 ~vw~l~e 1249 (1249)
T 3sfz_A 1243 YILQVLE 1249 (1249)
T ss_dssp EEECCCC
T ss_pred EEEeecC
Confidence 9999864
No 6
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.6e-60 Score=580.48 Aligned_cols=562 Identities=11% Similarity=0.153 Sum_probs=484.3
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCC-eEEEEEcC--CCCEEEEE
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVS-VNRVVWSP--DGSLLGVA 406 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~-V~~v~fsp--dg~~las~ 406 (1084)
..|.+.|.+++|||||++||++. | +.|+|||+.++... .....+.+|... |.+++|+| ||++||++
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~---------~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~ 84 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-G---------KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSG 84 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-T---------TEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEE
T ss_pred CCccCceeEEEECCCCCEEEEec-C---------CeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEe
Confidence 36788999999999999999975 4 89999999976111 122347889999 99999999 99999999
Q ss_pred eCCCEEEEEEccCCc-----cccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEeccCC
Q 001403 407 YSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHG 477 (1084)
Q Consensus 407 ~~dg~v~iwd~~~~~-----~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~~h~ 477 (1084)
+.||.|++||+.++. .......+..|...|.+++|+|+++ ++++++.+ +.|.+|| +++.+..+.+|.
T Consensus 85 ~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~ 160 (615)
T 1pgu_A 85 DESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS 160 (615)
T ss_dssp ETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--TCCEEEECCSCS
T ss_pred cCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--CCCcceeeecCC
Confidence 999999999997651 1123336778999999999999999 78888877 6788887 778889999999
Q ss_pred CcEEEEeecccCCCc-EEEEEecCCeEEEEECCCCCceEeecCCCC---eEEEEEEcCC-CCEEEEEeeCCCCCeeEEEe
Q 001403 478 APVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~w 552 (1084)
..|.+++|++ ++. .+++++.||.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++. ++.|++|
T Consensus 161 ~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~----dg~i~vw 234 (615)
T 1pgu_A 161 QRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCF 234 (615)
T ss_dssp SCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEE
T ss_pred ccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC----CCeEEEE
Confidence 9999999965 445 899999999999999999888888888888 9999999999 999999986 6679999
Q ss_pred cCCCceEeeee-e---ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC--CCCcceEEEecCC
Q 001403 553 NESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNG 626 (1084)
Q Consensus 553 d~~~~~~~~~~-~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~ 626 (1084)
|+.+++.+..+ . .|. ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+.. ...+.++.|+ ++
T Consensus 235 d~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 309 (615)
T 1pgu_A 235 DGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GN 309 (615)
T ss_dssp ETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ET
T ss_pred ECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CC
Confidence 99999999888 5 666 899999999 999999999999999999999999998876521 1245677775 89
Q ss_pred CEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccc
Q 001403 627 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 706 (1084)
Q Consensus 627 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~ 706 (1084)
.++++++.++.|++||+.+++.+..+.+|...|.++++ |. +++++.|+.+++|+
T Consensus 310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~~-------------------------l~~~~~dg~i~~w~ 363 (615)
T 1pgu_A 310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-NP-------------------------LISGSYDGRIMEWS 363 (615)
T ss_dssp TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-TT-------------------------TEEEETTSCEEETT
T ss_pred CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-cC-------------------------cEEECCCCeEEEEE
Confidence 99999999999999999999999999999999998887 52 78889999999999
Q ss_pred ceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccc
Q 001403 707 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN 786 (1084)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 786 (1084)
+. .+. ..|...|.+++| +++..+++++.|+.+++|++.....
T Consensus 364 ~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~-------------------------- 405 (615)
T 1pgu_A 364 SS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEF-------------------------- 405 (615)
T ss_dssp TT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEEC--------------------------
T ss_pred ch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcc--------------------------
Confidence 86 111 458899999999 6788899999999999998654321
Q ss_pred cCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC-CCeEEEEEc
Q 001403 787 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIYNA 865 (1084)
Q Consensus 787 ~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg~i~iwd~ 865 (1084)
...+.+++++|++.+++++.++.+.+|++.+++.+..+. +...+.+++|+ +++|++++. ||.|++||+
T Consensus 406 -------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~~~d~~i~~~~~ 474 (615)
T 1pgu_A 406 -------GSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGLEEGNTIQVFKL 474 (615)
T ss_dssp -------SSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEETTTSCEEEEET
T ss_pred -------cCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEeecCCCeEEEEEC
Confidence 125778999999999999888999999999999988887 78899999998 679999999 999999999
Q ss_pred CCceee-eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC-CccCCCCceEEEEcc-----
Q 001403 866 RSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHK----- 938 (1084)
Q Consensus 866 ~~~~~~-~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~----- 938 (1084)
.+++.. ..+.+|...|++++|+||+++|++++.||.|++||+.+++. +....+ |.. .|++++|+|
T Consensus 475 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~~~~~sp~~~~~ 546 (615)
T 1pgu_A 475 SDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KINAISWKPAEKGA 546 (615)
T ss_dssp TEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEEEEEECCCC---
T ss_pred CCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---ceeEEEEcCccccc
Confidence 988766 77888999999999999999999999999999999998653 344444 544 899999999
Q ss_pred -----CCCEEEEE-eCCeEEEEEcCCc-ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 939 -----DQTRFLLV-HETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 939 -----dg~~la~~-~d~~i~vwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
++++||++ .|+.|++||+.++ +++.. ..+|...|.+++|+|||+ |++++.||.|++|++.++
T Consensus 547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~ 615 (615)
T 1pgu_A 547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE 615 (615)
T ss_dssp ---CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred cccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence 99999995 7899999999998 45544 678999999999999999 999999999999999753
No 7
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=100.00 E-value=2.2e-58 Score=607.94 Aligned_cols=589 Identities=16% Similarity=0.185 Sum_probs=497.5
Q ss_pred eeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 382 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
..+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++
T Consensus 609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~v 683 (1249)
T 3sfz_A 609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKI 683 (1249)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEE
T ss_pred EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEE
Confidence 3477899999999999999999999999999999999987655 6789999999999999999 8999999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
||+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 684 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~ 763 (1249)
T 3sfz_A 684 WDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA 763 (1249)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES
T ss_pred EECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC
Confidence 99999999999999999999999988777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
++.|++||+.+++....+.... .....+.+++|+|+++.+++++ ++.+.+||..++.....+...
T Consensus 764 ----dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~ 838 (1249)
T 3sfz_A 764 ----DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG 838 (1249)
T ss_dssp ----SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS
T ss_pred ----CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC
Confidence 6779999999988776664321 0123678899999999999987 689999999999988877632
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK 691 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~ 691 (1084)
+...+.+++|+|+++++++++.+|.|++|++.++..+..+.+|...|.+++|+ |+++
T Consensus 839 -~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~ 895 (1249)
T 3sfz_A 839 -HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGS 895 (1249)
T ss_dssp -SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSS
T ss_pred -CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCC
Confidence 23468999999999999999999999999999999999999999999999997 6788
Q ss_pred ccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecC
Q 001403 692 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 771 (1084)
Q Consensus 692 ~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~ 771 (1084)
.+++++.|+.+++|+.......... .......+.+.+++..+++....+.+.++.....
T Consensus 896 ~l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 954 (1249)
T 3sfz_A 896 SFLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG------------- 954 (1249)
T ss_dssp EEEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC-------------
T ss_pred EEEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc-------------
Confidence 8999999999999997643222111 1223445667777777777777777766653321
Q ss_pred CeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcE
Q 001403 772 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~ 850 (1084)
.... .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++
T Consensus 955 ---------~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~ 1017 (1249)
T 3sfz_A 955 ---------QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKT 1017 (1249)
T ss_dssp ---------CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSC
T ss_pred ---------eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCE
Confidence 1111 1456799999999999999998 79999999999999999999999999999999 8999
Q ss_pred EEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCC
Q 001403 851 IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 851 la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
|++++.||.|++||+.+++... +.+|...|.+++|+|++ .+++++.||+|++||+.+++.. ....+|.. .
T Consensus 1018 l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~-----~~~~~~~~---~ 1087 (1249)
T 3sfz_A 1018 LISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIE-----RDFTCHQG---T 1087 (1249)
T ss_dssp EEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCC-----EEEECCSS---C
T ss_pred EEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCcee-----EEEcccCC---c
Confidence 9999999999999999988764 56799999999999975 6788999999999999987633 33344444 7
Q ss_pred ceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 931 ETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
|.+++|+|||++++++ .|++|++||+.+++++.. ..+|...|++++|+|||++|++++.||.|++||+.+++....+.
T Consensus 1088 v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~ 1166 (1249)
T 3sfz_A 1088 VLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCA 1166 (1249)
T ss_dssp CCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCC
T ss_pred EEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEec
Confidence 9999999999999995 889999999999998877 55899999999999999999999999999999999998876553
Q ss_pred cccccCC-CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1010 STAYLRP-TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1010 ~~~~~~~-~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+...... ..|...|. +++|+| |+.+|++++ |.|++||+.....
T Consensus 1167 ~~~~~~~~~~~~~~v~--~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1167 PISVEEGTATHGGWVT--DVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp CCC-------CCSCCC--EEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred cccccccccccCceEE--EEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 2221111 11344444 688999 588998885 9999999966543
No 8
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-57 Score=567.91 Aligned_cols=596 Identities=11% Similarity=0.096 Sum_probs=450.8
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
....+|.+.|.+++|||||++||+|..| ++|+||+..+...... ..|...|.+++|+| |++||+++
T Consensus 11 ~~~~gh~~~V~~lafspdg~~lAsgs~D---------g~I~lw~~~~~~~~~~----~~~~~~V~~l~fsp-g~~L~S~s 76 (902)
T 2oaj_A 11 TNKYGMSSKPIAAAFDFTQNLLAIATVT---------GEVHIYGQQQVEVVIK----LEDRSAIKEMRFVK-GIYLVVIN 76 (902)
T ss_dssp EEEEECSSCEEEEEEETTTTEEEEEETT---------SEEEEECSTTCEEEEE----CSSCCCEEEEEEET-TTEEEEEE
T ss_pred ccccCCCCCcEEEEECCCCCEEEEEeCC---------CEEEEEeCCCcEEEEE----cCCCCCEEEEEEcC-CCEEEEEE
Confidence 3446899999999999999999999988 9999999876544322 34788999999999 88999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-----------eEeccC
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----------YSFEGH 476 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-----------~~~~~h 476 (1084)
.|++|+|||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++||+++++.. ..+.+|
T Consensus 77 ~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h 150 (902)
T 2oaj_A 77 AKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAAR 150 (902)
T ss_dssp TTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSC
T ss_pred CcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceeccccccccccccC
Confidence 99999999999987665 443 678999999999999 8999999999999999988764 344679
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------------------CCeEEEEEEcCCCCEEEE
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~d~~~l~~ 538 (1084)
.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+ ...|.+++|+|+|++|++
T Consensus 151 ~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 151 LSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred CCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 999999999764 34689999999999 9999988777666554 357999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeee--ee---ccc----------cccCceEEEEEc----CCC-CEEEEEECC-----Cc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD-----HV 593 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~s----~~~-~~l~~~~~d-----g~ 593 (1084)
++. ++.|++||+.+++.+.. +. .|. .+...|.+++|+ |++ ..+++|+.| ..
T Consensus 229 gs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~ 304 (902)
T 2oaj_A 229 IHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQS 304 (902)
T ss_dssp EET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCC
T ss_pred EEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCce
Confidence 986 66799999999987653 21 121 023579999995 443 456667665 37
Q ss_pred EEEEECC------------------CCeEEEEEcCCCCCCCcceEEEec----------CCCEEEEEECCCeEEEEEcCC
Q 001403 594 IKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 594 i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
+.+|++. +++....+... ....+..+++.+ +...+++++.|+.|++|++.+
T Consensus 305 v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~ 383 (902)
T 2oaj_A 305 LTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPS 383 (902)
T ss_dssp EEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTT
T ss_pred EEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCC
Confidence 8899842 22334444321 123467777755 345788999999999999987
Q ss_pred CCeee-------eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceee
Q 001403 646 SNSVD-------AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL 718 (1084)
Q Consensus 646 ~~~~~-------~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~ 718 (1084)
+.... .+..|...|+++++++. ..++|+.........
T Consensus 384 g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~~~~~--- 427 (902)
T 2oaj_A 384 GIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSAAQNK--- 427 (902)
T ss_dssp CCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHTTBCC---
T ss_pred CCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhcccCC---
Confidence 75432 23445566776666521 123444221111000
Q ss_pred ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 719 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 719 ~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
..+..+|...+..++|+|+++.+++++.|++|++||+..+.... ..++... + ...+ ..+|...|.
T Consensus 428 ~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~----l-~~~~-~~~h~~~V~ 492 (902)
T 2oaj_A 428 DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN----L-SRTL-NKAKELAVD 492 (902)
T ss_dssp CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE----H-HHHT-TCSSSCCEE
T ss_pred CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee----c-hhhc-CCCCCCcee
Confidence 11234567778889999999999999999999999987652200 0000000 0 0000 114888999
Q ss_pred EEEecCCCCEEEEEe-CCeEEEEEcCCc---------------------------------------------eeEEEEc
Q 001403 799 CFALSKNDAYLFSAS-GGVISLYIVMTF---------------------------------------------KTILTIM 832 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s-dg~i~vwd~~~~---------------------------------------------~~~~~~~ 832 (1084)
+++|+|||++||+++ ||+|++||+.++ +++..+.
T Consensus 493 svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 572 (902)
T 2oaj_A 493 KISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVH 572 (902)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEEC
T ss_pred EEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEE
Confidence 999999999999998 799999999876 2467888
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-----eec-ccccCEEEEEEc-----CCC---CEEEEEeC
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---NILVSSGG 898 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----pd~---~~l~s~s~ 898 (1084)
+|.+.|++++||| || +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|+ ||| ++|++|+.
T Consensus 573 ~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~ 650 (902)
T 2oaj_A 573 ANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD 650 (902)
T ss_dssp CCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred cCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence 9999999999999 88 99999999999999998877653 343 899999999999 885 89999999
Q ss_pred CCcEEEEeC---CCCceeeeeeeecCCCCccC--CCCceEEE-Ec----------------------cCCCEEEEEeCCe
Q 001403 899 DAQIFVWDV---DGWGIQTCRSLQTPDGVMTL--APSETHIQ-FH----------------------KDQTRFLLVHETH 950 (1084)
Q Consensus 899 dg~I~iwd~---~~~~~~~~~~~~~~~~~~~~--~~~v~~~~-~s----------------------~dg~~la~~~d~~ 950 (1084)
|++|++||+ .+|+... .+.+|... .+.|..++ |+ +++.+|+++ +..
T Consensus 651 D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~-~~~ 724 (902)
T 2oaj_A 651 MGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG-FDD 724 (902)
T ss_dssp TSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC-SSE
T ss_pred CCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe-ccc
Confidence 999999999 6655322 22222210 13566665 65 556555555 889
Q ss_pred EEEEEcCCcceeeEeecCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 951 LAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
|+||++.++++.+.. .+|...+.++ . |+++|..|++.+.||+|++|++.+++.+.....
T Consensus 725 ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 725 IRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp EEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred eEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 999999999998876 4566666676 5 789999999999999999999999999887763
No 9
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=100.00 E-value=1.3e-57 Score=554.74 Aligned_cols=554 Identities=11% Similarity=0.113 Sum_probs=467.5
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC----ccccceeeeeccccc-EeEEEeec--CCCcEEEEEEeCCC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDDK 457 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~----~~~~~~~~l~~h~~~-V~~l~~s~--d~~~l~l~s~~~d~ 457 (1084)
..|...|.+++|||||++||+++ ++.|+|||+.++ +... .+.+|.+. |++++|+| +++ +|++++.|+
T Consensus 15 ~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~dg 88 (615)
T 1pgu_A 15 STQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDESG 88 (615)
T ss_dssp CCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETTS
T ss_pred CCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCCC
Confidence 35889999999999999999998 789999999987 5444 78899999 99999999 999 899999999
Q ss_pred cEEEEECCCC--------ceeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEE
Q 001403 458 TIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCT 525 (1084)
Q Consensus 458 ~i~vwd~~~g--------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~ 525 (1084)
+|++||+.++ ..+..+..|..+|.+++|++ ++.+|++++.+ +.|++|| ..+....+..+...|.
T Consensus 89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~ 164 (615)
T 1pgu_A 89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRIN 164 (615)
T ss_dssp EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEE
T ss_pred EEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEE
Confidence 9999999855 67788899999999999954 77899999988 6788886 5677788888999999
Q ss_pred EEEEcCCCC-EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC---ceEEEEEcCC-CCEEEEEECCCcEEEEECC
Q 001403 526 RMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 526 ~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~---~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~ 600 (1084)
+++|+|+++ .+++++. ++.|++||..+++.+..+.+|. . .|.+++|+|+ ++++++++.||.|++||+.
T Consensus 165 ~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~ 237 (615)
T 1pgu_A 165 ACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGK 237 (615)
T ss_dssp EEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEETT
T ss_pred EEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEECC
Confidence 999999998 7888775 6779999999999999999888 6 8999999999 9999999999999999999
Q ss_pred CCeEEEEE-c---CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccc----cceeEEEEcCCCceee
Q 001403 601 KVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVTG 672 (1084)
Q Consensus 601 ~~~~~~~~-~---~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----~~i~~~~~~p~~~~~~ 672 (1084)
+++.+..+ . .+ ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+. ..+.++.+
T Consensus 238 ~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 306 (615)
T 1pgu_A 238 SGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-------- 306 (615)
T ss_dssp TCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE--------
T ss_pred CCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe--------
Confidence 99999888 3 34 3469999999 99999999999999999999998887776653 33333333
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 752 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 752 (1084)
+++..+++++.++.+++|++....... .+ ..|...|.+++| |+ +++++.||.+++
T Consensus 307 ---------------~~~~~l~~~~~~g~i~~~d~~~~~~~~----~~--~~~~~~v~~~~~-~~---l~~~~~dg~i~~ 361 (615)
T 1pgu_A 307 ---------------TGNGRIISLSLDGTLNFYELGHDEVLK----TI--SGHNKGITALTV-NP---LISGSYDGRIME 361 (615)
T ss_dssp ---------------EETTEEEEEETTSCEEEEETTEEEEEE----EE--CCCSSCEEEEET-TT---TEEEETTSCEEE
T ss_pred ---------------CCCCeEEEEECCCCEEEEECCCCcEEE----EE--eCCCCCEEEEEe-cC---cEEECCCCeEEE
Confidence 367889999999999999987533221 11 348889999999 88 999999999999
Q ss_pred eeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE
Q 001403 753 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI 831 (1084)
Q Consensus 753 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~ 831 (1084)
|++. ++. ..|...|.+++| +++..+++++ ++.+++||+.+++...
T Consensus 362 w~~~-------------------------~~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-- 407 (615)
T 1pgu_A 362 WSSS-------------------------SMH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-- 407 (615)
T ss_dssp TTTT-------------------------EEE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS--
T ss_pred EEch-------------------------hhc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC--
Confidence 9753 011 248899999999 5566677666 8999999998765432
Q ss_pred cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCC
Q 001403 832 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW 910 (1084)
Q Consensus 832 ~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~~~ 910 (1084)
.+.+++|+| ++.+++++ .++.+.+|+..+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.++
T Consensus 408 -----~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~ 477 (615)
T 1pgu_A 408 -----QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDL 477 (615)
T ss_dssp -----CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEE
T ss_pred -----CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCc
Confidence 678999999 88888877 88999999999999888887 88999999999 899999999 999999999985
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc---------
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC--------- 980 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~--------- 980 (1084)
+... ....+|.. .|.+++|+|+|++|+++ .|+.|++||+.+++.+..+...|...|++++|+|
T Consensus 478 ~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~ 550 (615)
T 1pgu_A 478 EVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEE 550 (615)
T ss_dssp EEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------C
T ss_pred cccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCccccccccc
Confidence 4221 44445554 89999999999999995 7899999999999998875544999999999999
Q ss_pred -CCCEEEEEeCCCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 981 -DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 981 -dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+++|++++.||.|++||+.++ +.+..+. .|...|. +++|+| |+. |++++.||.|++|++..
T Consensus 551 ~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~--------~h~~~v~--~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 551 IEEDLVATGSLDTNIFIYSVKRPMKIIKALN--------AHKDGVN--NLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp CSCCEEEEEETTSCEEEEESSCTTCCEEETT--------SSTTCEE--EEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred cCCCEEEEEcCCCcEEEEECCCCceechhhh--------cCccceE--EEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 9999999999999999999998 5555544 1344455 678888 477 99999999999999853
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-56 Score=555.28 Aligned_cols=596 Identities=9% Similarity=0.045 Sum_probs=437.5
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..||...|++++|+|||++||+|+.||+|+||+..+++... ...|...|.+++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 44699999999999999999999999999999998765432 235788999999999 77 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-----------EeecCCCCeEEEEEEcCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d 532 (1084)
+++++++..+. |...|++++|+| ++.++++|+.||.|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 99999998886 778999999955 6789999999999999999876542 223557779999999996
Q ss_pred C-CEEEEEeeCCCCCeeEEEecCCCceEeeeeecc---------------ccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 533 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 533 ~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~---------------~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
+ ..+++++. ++.| +||+++++.+..+..| ..|...|.+++|+|++++|++++.||+|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777654 6779 9999999998888766 112367999999999999999999999999
Q ss_pred EECCCCeEEEEEcC-----CC-----------CCCCcceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001403 597 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE----- 645 (1084)
Q Consensus 597 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~~-~~l~~~~~d-----g~i~iwd~~~----- 645 (1084)
||+.+++++..... +. +...|.+++|++ ++ .++++++.+ +.+.+|++..
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~ 317 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS 317 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence 99999988765221 21 123588999964 43 567777665 3788888531
Q ss_pred -------------CCeeeecc-ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeec
Q 001403 646 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR 711 (1084)
Q Consensus 646 -------------~~~~~~~~-~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~ 711 (1084)
.+....+. .+...+..+.+.+.......+ ..++..+++++.|+++++|++..+.
T Consensus 318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~ 385 (902)
T 2oaj_A 318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI 385 (902)
T ss_dssp GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence 11222222 233445555544311100000 1244567888889999999985321
Q ss_pred Cccc-eeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC
Q 001403 712 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 712 ~~~~-~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
.... .........|...|.++++++... .+|+..... . +... ..+.
T Consensus 386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~--~~l~- 432 (902)
T 2oaj_A 386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD--YLLK- 432 (902)
T ss_dssp EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC--CSCC-
T ss_pred cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC--Cccc-
Confidence 1110 000111123557888888865332 234321100 0 0000 0122
Q ss_pred CCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeE----EE--Ec-----CCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 791 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
+|...+..++|+||+++|++++ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|+.||
T Consensus 433 -G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg 510 (902)
T 2oaj_A 433 -GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG 510 (902)
T ss_dssp -CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred -CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence 4777888899999999999998 899999999887421 11 11 7888999999999 899999999999
Q ss_pred eEEEEEcCCce---------------------------------------------eeeeecccccCEEEEEEcCCCCEE
Q 001403 859 TILIYNARSSE---------------------------------------------VISKLEGHSKRVTGLVFSDALNIL 893 (1084)
Q Consensus 859 ~i~iwd~~~~~---------------------------------------------~~~~l~~h~~~V~~l~~spd~~~l 893 (1084)
+|+|||+.+++ ++..+.+|.+.|++++||||| +|
T Consensus 511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l 589 (902)
T 2oaj_A 511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV 589 (902)
T ss_dssp CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence 99999998762 467788999999999999999 99
Q ss_pred EEEeCCCcEEEEeCCCCceeeeeeeecCC-CCccCCCCceEEEEc-----cCC---CEEEE-EeCCeEEEEEc---CCcc
Q 001403 894 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLL-VHETHLAIYEA---EELT 960 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s-----~dg---~~la~-~~d~~i~vwd~---~~~~ 960 (1084)
|+|+.|++|+|||+.+........+.... +|.. .|++++|| ||| ++|++ +.|++|++||+ .+|+
T Consensus 590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~ 666 (902)
T 2oaj_A 590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK 666 (902)
T ss_dssp EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence 99999999999999886543221223443 6655 89999999 886 88888 58899999999 7888
Q ss_pred eeeEeecCC-----CCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEEcCCCceeEEecccc
Q 001403 961 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1012 (1084)
Q Consensus 961 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~ 1012 (1084)
+...+. +| .++|.+++ |+ ++|..|+++ +..||||++.++++......
T Consensus 667 ~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~-- 741 (902)
T 2oaj_A 667 FDVQLM-DITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK-- 741 (902)
T ss_dssp EEEEEE-EEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS--
T ss_pred EEEEec-CceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc--
Confidence 776643 44 57888877 76 556555543 77899999999988766531
Q ss_pred ccCCCCcccceeee-EEE------ECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1013 YLRPTTSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1013 ~~~~~~~~~~v~~~-~~~------~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
|...+..+ .+. |++ ++..|++++.||+|++|++.+-+.
T Consensus 742 ------~~~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~ 786 (902)
T 2oaj_A 742 ------YPLAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKE 786 (902)
T ss_dssp ------SCEEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCE
T ss_pred ------cceeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHH
Confidence 11222222 124 566 578999999999999999977664
No 11
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=2.2e-47 Score=480.77 Aligned_cols=558 Identities=14% Similarity=0.183 Sum_probs=425.7
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+++.+|++.|.+++|||||++||++..| +.|+|||+.++..... +.+|...|.+++|+|+|++||+
T Consensus 5 ~~~~~~~h~~~v~~i~~sp~~~~la~~~~~---------g~v~iwd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~l~~ 72 (814)
T 3mkq_A 5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYS---------GRVEIWNYETQVEVRS---IQVTETPVRAGKFIARKNWIIV 72 (814)
T ss_dssp CEEEEEEECSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEEE
T ss_pred cceeeecCCCceEEEEECCCCCEEEEEeCC---------CEEEEEECCCCceEEE---EecCCCcEEEEEEeCCCCEEEE
Confidence 457889999999999999999999999877 9999999988665433 6689999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~ 484 (1084)
++.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ ++++++.|++|++||+.++ .....+.+|...|.+++
T Consensus 73 ~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~ 147 (814)
T 3mkq_A 73 GSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVA 147 (814)
T ss_dssp EETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEE
T ss_pred EeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEE
Confidence 9999999999999987655 6789999999999999999 8999999999999999987 67788899999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-CeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++.+.
T Consensus 148 ~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~ 222 (814)
T 3mkq_A 148 FNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCVA 222 (814)
T ss_dssp EETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTEEEE
T ss_pred EEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCcEEE
Confidence 9652 55799999999999999998887777666554 7899999999 9999999875 6779999999999999
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE-EEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL-LAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~-l~~~~~dg~i~i 640 (1084)
.+.+|. ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.++.+.+
T Consensus 223 ~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~ 297 (814)
T 3mkq_A 223 TLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFTV 297 (814)
T ss_dssp EEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEEE
T ss_pred EEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEEE
Confidence 998887 8999999999999999999999999999999999999886644 6899999999873 244445677889
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc---------ccccceeec
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS---------EVEKPLFAR 711 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i---------~~w~~~~~~ 711 (1084)
|++...... +.++|.+. .+++++.+... ..|++....
T Consensus 298 ~~~~~~~~~------------~~~~~~g~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (814)
T 3mkq_A 298 LSLGNDEPT------------LSLDPVGK----------------------LVWSGGKNAAASDIFTAVIRGNEEVEQDE 343 (814)
T ss_dssp EECSCCSCC------------EEECSSSE----------------------EEEECCTTSCTTCEEEEECCSCCCCCSSS
T ss_pred EEcCCCCce------------eEECCCCC----------------------EEEECcccccceeeeeeecccccccccCc
Confidence 987755322 33443333 33333222210 112222211
Q ss_pred CccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCC
Q 001403 712 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 791 (1084)
Q Consensus 712 ~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1084)
......... ..+...+.+++|+|+|+.+++++ +|.+.+|++.....
T Consensus 344 ~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~------------------------------- 389 (814)
T 3mkq_A 344 PLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN------------------------------- 389 (814)
T ss_dssp CBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE-------------------------------
T ss_pred cceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc-------------------------------
Confidence 111111111 22456788999999999888887 89999998532110
Q ss_pred CCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCC---cEEEEEeCCCeEEEEEcCC
Q 001403 792 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 792 ~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~la~g~~dg~i~iwd~~~ 867 (1084)
.+...+.+++|+|||+++++++ ++.+++|+.. .+|...+.+++|+| ++ .+|++++.|+.|++||+.+
T Consensus 390 ~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~--------~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~ 460 (814)
T 3mkq_A 390 KAFGKCQDFVWGPDSNSYALIDETGQIKYYKNF--------KEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWDN 460 (814)
T ss_dssp EEEEECSEEEECTTSSCEEEECTTCCEEEEETT--------EECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTTT
T ss_pred cCCCceEEEEEeCCCCeEEEEeCCCcEEEEECC--------CCccceEEcCCcCc-cceecceEEEEecCCEEEEEECCc
Confidence 1345688999999999999997 6999999632 34667888999999 77 5888899999999999999
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEE------eCCCcEEEEeCCC---------------CceeeeeeeecCCCCcc
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCRSLQTPDGVMT 926 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~------s~dg~I~iwd~~~---------------~~~~~~~~~~~~~~~~~ 926 (1084)
++.+..+.+|.. .++|+|||++|+++ +.++.+.+|--.. +.......+...
T Consensus 461 ~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 532 (814)
T 3mkq_A 461 GTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYEL----- 532 (814)
T ss_dssp CCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEE-----
T ss_pred CcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEe-----
Confidence 999999998875 89999999999999 6666555554210 000000111110
Q ss_pred CCCCceEEEEccCCCEEEEEe-CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 927 LAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
...+.+..|. +..++... .+.+..+. .++... ......++..+.|.+++..++....++.+++|++...
T Consensus 533 -~~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~~ 602 (814)
T 3mkq_A 533 -SESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVYGYEISLE 602 (814)
T ss_dssp -CSCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEEEEECCHH
T ss_pred -ccEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEEEEEECcH
Confidence 1135566664 33443332 34444432 222211 1123556777788899999999999999999998754
No 12
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=100.00 E-value=1.4e-46 Score=473.51 Aligned_cols=562 Identities=14% Similarity=0.163 Sum_probs=426.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|||||++||+++.||.|+|||+.+++.+. .+.+|.++|.+++|+|+++ +|++++.|+.|++|
T Consensus 8 ~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw 82 (814)
T 3mkq_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (814)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEE
Confidence 367899999999999999999999999999999999987655 6779999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcC-CCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 540 (1084)
|+.+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++
T Consensus 83 ~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~ 160 (814)
T 3mkq_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (814)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEE
T ss_pred ECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEe
Confidence 9999999999999999999999955 6789999999999999999887 45567788889999999999 888999987
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. ++.|++||+.++.....+..+. ...+..++|+| ++.++++++.||.|++||+.+++.+..+..+.. .|.
T Consensus 161 ~----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~ 232 (814)
T 3mkq_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (814)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEE
Confidence 6 6779999999888777776554 36799999999 999999999999999999999999998886644 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc-cceec
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP-EISVE 697 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~-l~~~~ 697 (1084)
+++|+|+++++++++.||.|++||..+++....+..+...+.+++++| ++.. +++.+
T Consensus 233 ~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~----------------------~~~~~~~~~~ 290 (814)
T 3mkq_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP----------------------TGRKNYIASG 290 (814)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECT----------------------TCGGGEEEEE
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEcc----------------------CCCceEEEEE
Confidence 999999999999999999999999999999999999999999999985 4433 25555
Q ss_pred ccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCce-EEeeccCCccCcCcccceecCCeeec
Q 001403 698 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQ 776 (1084)
Q Consensus 698 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~ 776 (1084)
.++.+.+|++.. ....+.++|+|+.+++++.+... .++... ....|+
T Consensus 291 ~~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~ 338 (814)
T 3mkq_A 291 FDNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEE 338 (814)
T ss_dssp ETTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCC
T ss_pred eCCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------cccccc
Confidence 566777777542 12346788999988877665321 111100 011233
Q ss_pred CCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC
Q 001403 777 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 856 (1084)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~ 856 (1084)
+..+............+...+.+++|+|+|+++++++++.+.+|++....... .+.+.+++|+| +++++|+++.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~ 412 (814)
T 3mkq_A 339 VEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDE 412 (814)
T ss_dssp CCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECT
T ss_pred cccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeC
Confidence 33333222211111236678899999999999999999999999987654432 34678999999 8999999999
Q ss_pred CCeEEEEEcCCceeeeeecccccCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 857 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 857 dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
+|.|++|+ .+.+|...+.+++|+||+ .+|++++.|++|++||+.+++ .+.....+. ..
T Consensus 413 ~g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~-----~~~~~~~~~------~~ 473 (814)
T 3mkq_A 413 TGQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGT-----LVRRIDVNA------KD 473 (814)
T ss_dssp TCCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCC-----EEEEESSCE------EE
T ss_pred CCcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCc-----EEEEEecCC------CE
Confidence 99999995 346688889999999998 689999999999999999865 333334332 28
Q ss_pred EEEccCCCEEEEE------eCCeEEEEEcCCccee-----------------eEeecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 934 IQFHKDQTRFLLV------HETHLAIYEAEELTCL-----------------KQWFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 934 ~~~s~dg~~la~~------~d~~i~vwd~~~~~~~-----------------~~~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
++|+|||++|+++ .++.+.+|....+... ..........|.+.+|. +..++..+.
T Consensus 474 v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~s~~w~--~~~~i~~t~ 551 (814)
T 3mkq_A 474 VIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYELSESITSGKWV--GDVFIFTTA 551 (814)
T ss_dssp EEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEECSCCSEEEEE--TTEEEEECT
T ss_pred EEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEeccEEEeeEEe--CCEEEEEcC
Confidence 9999999999997 6666666643321110 00011112234445553 223333322
Q ss_pred CCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 991 DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 991 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
.+.+..+ ..++.. .+. .+ ...++ .+.|.+ +++.++....++.+..|++..
T Consensus 552 ~~~~~~~--~~~~~~-~~~---~~-----~~~~~--~~~~~~-~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 552 TNRLNYF--VGGKTY-NLA---HY-----TKEMY--LLGYLA-RDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp TSEEEEE--ETTEEE-EEE---EC-----SSCCE--EEEEEG-GGTEEEEECTTCCEEEEECCH
T ss_pred CCeEEEE--eCCeeE-EEE---EC-----CccEE--EEEEEe-cCCEEEEEcCCCCEEEEEECc
Confidence 2333332 122211 111 01 11233 244555 478999999999999999753
No 13
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=8.2e-45 Score=415.30 Aligned_cols=288 Identities=22% Similarity=0.363 Sum_probs=266.4
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
..|.+|.+.|.+++|+|++++||+|+.| ++|+|||+.++.... .+.+|...|.+++|+|+|++||+|+
T Consensus 102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~D---------g~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~~l~sgs 169 (410)
T 1vyh_C 102 YALSGHRSPVTRVIFHPVFSVMVSASED---------ATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGKLLASCS 169 (410)
T ss_dssp CEEECCSSCEEEEEECSSSSEEEEEESS---------SCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSSEEEEEE
T ss_pred EeecccCCcEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCCEEEEEe
Confidence 3578999999999999999999999988 999999999876543 3788999999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecc
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~ 487 (1084)
.|++|++||+.+++++. .+.+|...|.+++|+|+++ ++++|+.|++|++||+.++.++.++.+|...|.++.++
T Consensus 170 ~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~- 243 (410)
T 1vyh_C 170 ADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN- 243 (410)
T ss_dssp TTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC-
T ss_pred CCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEEC-
Confidence 99999999999887655 6789999999999999999 89999999999999999999999999999999999985
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC--------------------CCEEEEEeeCCCCCe
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSCGTSKEGES 547 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------~~~l~~~~~~~~~~~ 547 (1084)
+++.++++++.||+|++||+.+......+..+...|.+++|+|+ |.++++++. ++
T Consensus 244 -~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~----D~ 318 (410)
T 1vyh_C 244 -QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR----DK 318 (410)
T ss_dssp -TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET----TS
T ss_pred -CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC----CC
Confidence 47789999999999999999999998999999999999999996 678999886 67
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.|++||+.+++++..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|.. .|.+++|+|++.
T Consensus 319 ~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~~~~ 393 (410)
T 1vyh_C 319 TIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHKTAP 393 (410)
T ss_dssp EEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECSSSS
T ss_pred eEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcCCCC
Confidence 79999999999999999988 8999999999999999999999999999999999999987654 699999999999
Q ss_pred EEEEEECCCeEEEEEc
Q 001403 628 LLAVIANENRIKILET 643 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~ 643 (1084)
+|++|+.|+.|++|+.
T Consensus 394 ~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 394 YVVTGSVDQTVKVWEC 409 (410)
T ss_dssp CEEEEETTSEEEEEC-
T ss_pred EEEEEeCCCcEEEEeC
Confidence 9999999999999985
No 14
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=9.7e-40 Score=359.42 Aligned_cols=294 Identities=16% Similarity=0.257 Sum_probs=266.4
Q ss_pred ceeeecccCCCCceEEEEcCC----CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPV----QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 400 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd----g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg 400 (1084)
...+.+.+|.+.|++++|+|+ +.+||+|+.| ++|+||++.+....... .+.+|...|.+++|+|++
T Consensus 23 ~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D---------~~v~vW~~~~~~~~~~~-~l~gh~~~v~~~~~~~~~ 92 (321)
T 3ow8_A 23 ILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLD---------DLVKVWKWRDERLDLQW-SLEGHQLGVVSVDISHTL 92 (321)
T ss_dssp EEEEETTSSSSCEEEEEEC-------CEEEEEETT---------SCEEEEEEETTEEEEEE-EECCCSSCEEEEEECSSS
T ss_pred heeeecccCCCcEEEEEEecCCCCCCCEEEEEcCC---------CCEEEEECCCCCeeeee-eeccCCCCEEEEEECCCC
Confidence 345677899999999999985 6799999999 99999999765543332 378999999999999999
Q ss_pred CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
.++++++.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++++.|+.|++||+++++....+..|...|
T Consensus 93 ~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v 167 (321)
T 3ow8_A 93 PIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGKFI 167 (321)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSSCE
T ss_pred CEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCceE
Confidence 999999999999999999987655 6778889999999999999 89999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.+++|+| ++++|++++.||.|++||+.+++....+..+...|.+++|+|++++|++++. ++.|++||+.+++..
T Consensus 168 ~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~~~ 241 (321)
T 3ow8_A 168 LSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHANLA 241 (321)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCCEE
T ss_pred EEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCccee
Confidence 9999954 7789999999999999999999888889999999999999999999999976 667999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+.+|. ..|.+++|+|++++|++++.|++|++||+.+++++..+..+.. .|.+++|+|++++|++++.|+.|++
T Consensus 242 ~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~--~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 242 GTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQD--QVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEETTCCEEE
T ss_pred EEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCC--cEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999988 8999999999999999999999999999999999999986644 6999999999999999999999999
Q ss_pred EEcC
Q 001403 641 LETP 644 (1084)
Q Consensus 641 wd~~ 644 (1084)
||.+
T Consensus 317 wd~p 320 (321)
T 3ow8_A 317 YDCP 320 (321)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9964
No 15
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=3.7e-39 Score=358.80 Aligned_cols=296 Identities=18% Similarity=0.254 Sum_probs=265.1
Q ss_pred ccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
+....++|.+|.+.|.+++|+|||++||+++.| ++|+|||+.+...... +..|...|.+++|+|+|++
T Consensus 44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~D---------g~v~iWd~~~~~~~~~---~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQD---------GKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCEEEEECCCSSCEEEEEECTTSSEEEEEETT---------TEEEEEETTTCCEEEE---EECSSSCEEEEEECTTSSE
T ss_pred cchhheeecCCCCceEEEEECCCCCEEEEEeCC---------CcEEEEECCCCCcceE---eecCCccEEEEEECCCCCE
Confidence 345678899999999999999999999999988 9999999987765433 5679999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCcc-ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 403 LGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
||+|+.|+.|++||+.+++. ......+.+|.+.|.++.|++++. +++++.|++|++||+++++.+..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987642 233446789999999999999875 88999999999999999999999999999999
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
+++|+| ++.++++++.||.|++||+.+......+..|...|.+++|+|+++++++++. ++.|++||+++++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999965 6789999999999999999999989999999999999999999999999986 6679999999988877
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
.+.... +...|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++.+|++++.|+.|++|
T Consensus 263 ~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~--~v~~~~~s~dg~~l~s~s~D~~i~iW 339 (340)
T 1got_B 263 TYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDSFLKIW 339 (340)
T ss_dssp EECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred EEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCC--cEEEEEEcCCCCEEEEEcCCccEEec
Confidence 765322 235799999999999999999999999999999999999887654 69999999999999999999999999
Q ss_pred E
Q 001403 642 E 642 (1084)
Q Consensus 642 d 642 (1084)
|
T Consensus 340 d 340 (340)
T 1got_B 340 N 340 (340)
T ss_dssp C
T ss_pred C
Confidence 6
No 16
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=4.6e-39 Score=359.64 Aligned_cols=298 Identities=17% Similarity=0.234 Sum_probs=267.1
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
....++|.+|.+.|.+++|+|||++||+++.| ++|+|||..+...... +..|...|.+++|+|+|.+|
T Consensus 54 ~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~D---------g~v~vWd~~~~~~~~~---~~~~~~~v~~~~~sp~g~~l 121 (354)
T 2pbi_B 54 MKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQD---------GKVIVWDSFTTNKEHA---VTMPCTWVMACAYAPSGCAI 121 (354)
T ss_dssp CCEEEEEECCSSCEEEEEECTTSSEEEEEETT---------SEEEEEETTTCCEEEE---EECSSSCCCEEEECTTSSEE
T ss_pred cEEEEEecCCCCeEEEEEECCCCCEEEEEeCC---------CeEEEEECCCCCcceE---EecCCCCEEEEEECCCCCEE
Confidence 45678899999999999999999999999998 9999999987655433 55688999999999999999
Q ss_pred EEEeCCCEEEEEEccCCcc---ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v 480 (1084)
|+|+.|+.+++|++..... ......+.+|...|.+++|+|++. .+++++.|++|++||+++++.+.++.+|...|
T Consensus 122 asg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v 199 (354)
T 2pbi_B 122 ACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFHGHGADV 199 (354)
T ss_dssp EEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred EEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCe
Confidence 9999999999999875421 223346778999999999999999 79999999999999999999999999999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
.++++++++++.+|++++.||.|++||+++++....+..|...|.+++|+|+++++++++. ++.|++||+++++.+
T Consensus 200 ~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~~~~~~~ 275 (354)
T 2pbi_B 200 LCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDLRADREV 275 (354)
T ss_dssp EEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEE
T ss_pred EEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEECCCCcEE
Confidence 9999988878899999999999999999999998899999999999999999999999986 667999999998887
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
..+..+. ....+.+++|+|++.++++|+.|+.|++||+.+++.+..+..|.. .|.+++|+|+|++|++++.|+.|++
T Consensus 276 ~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~--~v~~l~~spdg~~l~sgs~D~~v~v 352 (354)
T 2pbi_B 276 AIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHEN--RVSTLRVSPDGTAFCSGSWDHTLRV 352 (354)
T ss_dssp EEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSCEEEEETTSEEEE
T ss_pred EEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCC--cEEEEEECCCCCEEEEEcCCCCEEe
Confidence 7665433 224689999999999999999999999999999999988876644 6999999999999999999999999
Q ss_pred EE
Q 001403 641 LE 642 (1084)
Q Consensus 641 wd 642 (1084)
|+
T Consensus 353 W~ 354 (354)
T 2pbi_B 353 WA 354 (354)
T ss_dssp EC
T ss_pred cC
Confidence 95
No 17
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.2e-38 Score=348.53 Aligned_cols=293 Identities=17% Similarity=0.304 Sum_probs=256.3
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
...+++.+|.+.|.+++|||||++||+++.| ++|+|||+.++..... +.+|...|.+++|+|++++|+
T Consensus 4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~d---------g~v~lWd~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~ 71 (304)
T 2ynn_A 4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYS---------GRVELWNYETQVEVRS---IQVTETPVRAGKFIARKNWII 71 (304)
T ss_dssp CCEEEEEEECSCEEEEEECSSSSEEEEEETT---------SEEEEEETTTTEEEEE---EECCSSCEEEEEEEGGGTEEE
T ss_pred eeEEeecCCCCceEEEEECCCCCEEEEEcCC---------CcEEEEECCCCceeEE---eeccCCcEEEEEEeCCCCEEE
Confidence 3467899999999999999999999999988 9999999988765433 677999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~ 483 (1084)
+|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++|+.|++|++||++++ .....+.+|...|.++
T Consensus 72 s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v 146 (304)
T 2ynn_A 72 VGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCV 146 (304)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEE
Confidence 99999999999999987655 7889999999999999999 8999999999999999988 4557789999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcC--CCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+|. ++..|++++.||+|++||+........+. .+...+..+.|+| ++++|++++. ++.|++||+++++++
T Consensus 147 ~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~~~~~~~ 221 (304)
T 2ynn_A 147 AFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKSCV 221 (304)
T ss_dssp EECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEETTTTEEE
T ss_pred EECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeCCCCccc
Confidence 99763 45799999999999999998877665554 4556788888876 7889999986 778999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC--EEEEEECCCeE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLAVIANENRI 638 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i 638 (1084)
..+.+|. ..|.+++|+|++++|++|+.||+|++||..+++.+..+..+.. .+.+++|+|++. ++++|+.+ .+
T Consensus 222 ~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~asg~~~-g~ 295 (304)
T 2ynn_A 222 ATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDN-GF 295 (304)
T ss_dssp EEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSS--SEEEEEECTTCGGGCEEEEETT-EE
T ss_pred eeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCc--cEEEEEECCCCCceEEEEecCC-ce
Confidence 9999998 8999999999999999999999999999999999999986543 588999999875 57777655 57
Q ss_pred EEEEcCC
Q 001403 639 KILETPE 645 (1084)
Q Consensus 639 ~iwd~~~ 645 (1084)
.+|++..
T Consensus 296 ~~~~~~~ 302 (304)
T 2ynn_A 296 TVLSLGN 302 (304)
T ss_dssp EEEECC-
T ss_pred EEEEecc
Confidence 7777654
No 18
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=2.9e-38 Score=347.94 Aligned_cols=298 Identities=19% Similarity=0.250 Sum_probs=259.8
Q ss_pred ceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.+..+|.+|.+.|.+++|+|++ ++||+++.| ++|++|++....... ....+.+|...|.+++|+|||+
T Consensus 8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D---------~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~ 78 (319)
T 3frx_A 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRD---------KTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA 78 (319)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETT---------SEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS
T ss_pred EEEEEEccccceEEEEEccCCCccEEEEecCC---------ccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC
Confidence 3456889999999999999976 899999999 999999997543321 2334789999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|++|++||++ +.++..+.+|...|.
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~ 152 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGHNDWVS 152 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCCSSCEE
T ss_pred EEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEeccCCcEE
Confidence 99999999999999999987655 7889999999999999999 89999999999999985 667888999999999
Q ss_pred EEeecccC----CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 482 SLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 482 ~~~~~~~~----~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
++.+.+.. ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++. ++.|++||+.++
T Consensus 153 ~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~ 228 (319)
T 3frx_A 153 QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAK 228 (319)
T ss_dssp EEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTT
T ss_pred EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCC
Confidence 99997643 4568999999999999999998888888999999999999999999999986 778999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC------CCCCcceEEEecCCCEEEE
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNGTLLAV 631 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~~~~l~~ 631 (1084)
+.+..+..+ ..|.+++|+|++.++++++.+ .+++|++..+..+..+..+. ....+.+++|+|||++|++
T Consensus 229 ~~~~~~~~~----~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~s 303 (319)
T 3frx_A 229 KAMYTLSAQ----DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFA 303 (319)
T ss_dssp EEEEEEECC----SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEE
T ss_pred cEEEEecCC----CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEE
Confidence 998888764 479999999999999888765 59999999888877765331 1235779999999999999
Q ss_pred EECCCeEEEEEcCCC
Q 001403 632 IANENRIKILETPES 646 (1084)
Q Consensus 632 ~~~dg~i~iwd~~~~ 646 (1084)
++.||.|++|++.++
T Consensus 304 g~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 304 GYTDNVIRVWQVMTA 318 (319)
T ss_dssp EETTSCEEEEEEEEC
T ss_pred eecCceEEEEEEeec
Confidence 999999999998653
No 19
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=100.00 E-value=1.1e-38 Score=364.58 Aligned_cols=286 Identities=18% Similarity=0.289 Sum_probs=267.1
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|..+|++++|+|++++|++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+++ +|++|+.|++|++||
T Consensus 104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd 178 (410)
T 1vyh_C 104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD 178 (410)
T ss_dssp EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence 56799999999999999999999999999999999997665 7889999999999999999 899999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++++.++.+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..|...+.+++++|+++++++++.
T Consensus 179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~-- 254 (410)
T 1vyh_C 179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN-- 254 (410)
T ss_dssp TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence 999999999999999999999965 6689999999999999999999999999999999999999999999999986
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCC--------------------CCEEEEEECCCcEEEEECCCCe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~--------------------~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.+++....+.+|. ..|.+++|+|+ +.++++|+.|+.|++||+.++.
T Consensus 255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~ 329 (410)
T 1vyh_C 255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 329 (410)
T ss_dssp --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence 6679999999999999998888 89999999996 6789999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
++..+..|.. .|.+++|+|++++|++++.|+.|++||..+++.+..+.+|...|.+++|+
T Consensus 330 ~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------ 389 (410)
T 1vyh_C 330 CLMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------ 389 (410)
T ss_dssp EEEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred eEEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence 9999987654 68999999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCccceecccCccccccc
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
|++.++++++.|++|++|+.
T Consensus 390 ----~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 390 ----KTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----SSSSCEEEEETTSEEEEEC-
T ss_pred ----CCCCEEEEEeCCCcEEEEeC
Confidence 67888999999999999985
No 20
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=5.4e-39 Score=359.35 Aligned_cols=320 Identities=16% Similarity=0.200 Sum_probs=235.0
Q ss_pred cceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCC
Q 001403 693 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP 772 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~ 772 (1084)
++.++.+.....|++....+ ..|...|.+++|+|||++|++++.+. +++|| ..+
T Consensus 19 ~~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd---------------~~v 72 (357)
T 4g56_B 19 YFQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWG---------------GSI 72 (357)
T ss_dssp -------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCC---------------EEE
T ss_pred EEecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-Ccccc---------------CeE
Confidence 34445556778888753222 24888999999999999999998863 35554 234
Q ss_pred eeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE----EEcCCCCCeEEEEEcCCCC
Q 001403 773 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDN 848 (1084)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~ 848 (1084)
++|+..++...........+|...|.+++|+|++++++++.+|+|++||+.+++... ...+|...|++++|+| ++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg 151 (357)
T 4g56_B 73 WVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DG 151 (357)
T ss_dssp EEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SS
T ss_pred EEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CC
Confidence 556666555433333333358889999999999988877779999999999876543 3457899999999999 89
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL 927 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~ 927 (1084)
++|++|+.||.|++||+.+++.+..+.+|...|++++|+|++. ++++++.||+|++||+.+++..... ....+.
T Consensus 152 ~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~---~~~~~~-- 226 (357)
T 4g56_B 152 TQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRI---DFCASD-- 226 (357)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBC---CCTTCC--
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeee---eecccc--
Confidence 9999999999999999999999999999999999999999875 7899999999999999986633211 111222
Q ss_pred CCCceEEEEccCC-CEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCce
Q 001403 928 APSETHIQFHKDQ-TRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 928 ~~~v~~~~~s~dg-~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
..+.+++|+|++ .+||++ .|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.||+|+|||+.++++
T Consensus 227 -~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~ 304 (357)
T 4g56_B 227 -TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEV 304 (357)
T ss_dssp -SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEE
T ss_pred -ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcE
Confidence 268999999985 677774 789999999999998877 55799999999999987 6799999999999999999987
Q ss_pred eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCC
Q 001403 1005 QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1057 (1084)
Q Consensus 1005 ~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~ 1057 (1084)
+..+. |.+.|+ +++|+|.|+.+|++++.||+|++|++...+.
T Consensus 305 ~~~~~---------H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 305 FRDLS---------HRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp EEECC---------CSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred eEECC---------CCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 75432 455565 6889997789999999999999999976653
No 21
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=100.00 E-value=7.1e-38 Score=348.46 Aligned_cols=287 Identities=14% Similarity=0.181 Sum_probs=263.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|||++|++|+.||+|+|||+.+++.+. .+..|...|.+++|+|+++ ++++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999987554 6778999999999999999 89999999999999
Q ss_pred ECCCC----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 463 DAVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 463 d~~~g----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|+.++ .....+.+|.+.|.++.|.+ ++ .+++++.||+|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 99876 35567889999999999965 33 5999999999999999999888899999999999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++. ++.|++||+.++..+..+.+|. ..|.+++|+|++++|++++.||+|++||+.+++.+..+........|.
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~ 274 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceE
Confidence 986 6679999999999999999888 899999999999999999999999999999999888887555445689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
+++|+|+|+++++++.|+.|++||..+++.+..+.+|...|.+++|+ |++.++++++.
T Consensus 275 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~ 332 (340)
T 1got_B 275 SVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSW 332 (340)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEET
T ss_pred EEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcC
Confidence 99999999999999999999999999999999999999999999997 67889999999
Q ss_pred cCcccccc
Q 001403 699 ENKSEVEK 706 (1084)
Q Consensus 699 d~~i~~w~ 706 (1084)
|++|++|+
T Consensus 333 D~~i~iWd 340 (340)
T 1got_B 333 DSFLKIWN 340 (340)
T ss_dssp TSCEEEEC
T ss_pred CccEEecC
Confidence 99999996
No 22
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.4e-39 Score=361.86 Aligned_cols=306 Identities=17% Similarity=0.242 Sum_probs=264.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+.++|.+|.+.|.+++|+|||++||+|+.| ++|+|||+.++..... +.+|...|.+++|+|+|++|
T Consensus 56 ~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D---------~~v~iWd~~~~~~~~~---~~~h~~~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 56 LVCCRTLQGHSGKVYSLDWTPEKNWIVSASQD---------GRLIVWNALTSQKTHA---IKLHCPWVMECAFAPNGQSV 123 (380)
T ss_dssp CEEEEEECCCSSCEEEEEECTTSSCEEEEETT---------SEEEEEETTTTEEEEE---EECCCTTCCCCEECTTSSEE
T ss_pred eEEeecccccccEEEEEEEcCCCCEEEEEeCC---------CeEEEEECCCCccceE---EecCCCCEEEEEECCCCCEE
Confidence 34668899999999999999999999999999 9999999988765433 67899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCcc----ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-----c
Q 001403 404 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-----E 474 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-----~ 474 (1084)
|+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+..+ .
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~ 202 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISIFGSEFPS 202 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEEECCCSSS
T ss_pred EEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEEeecccCC
Confidence 9999999999999976421 1223357799999999999998654 6999999999999999999998877 6
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEec
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 553 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd 553 (1084)
+|...|.++++++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|++++|++++. ++.|++||
T Consensus 203 ~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~i~lwd 277 (380)
T 3iz6_a 203 GHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----DGTCRLFD 277 (380)
T ss_dssp SCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----SSCEEEEE
T ss_pred CCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----CCeEEEEE
Confidence 79999999999643 567999999999999999984 4667788889999999999999999999986 66799999
Q ss_pred CCCceEeeeeeccccc----cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC--CCCCCCcceEEEecCCC
Q 001403 554 ESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPRICFNKNGT 627 (1084)
Q Consensus 554 ~~~~~~~~~~~~~~~~----~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v~~s~~~~ 627 (1084)
+.+++.+..+..+... ...+.+++|+|+++++++|+.||.|++||..+++.+..+.. .++...|.+++|+|+|+
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~ 357 (380)
T 3iz6_a 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGS 357 (380)
T ss_dssp TTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSS
T ss_pred CCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCC
Confidence 9999998887665311 12488999999999999999999999999999998887732 23445799999999999
Q ss_pred EEEEEECCCeEEEEEcCCCC
Q 001403 628 LLAVIANENRIKILETPESN 647 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~ 647 (1084)
+|++|+.|+.|++|++...+
T Consensus 358 ~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 358 ALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp EEEEECTTSCEEEEECCSSS
T ss_pred EEEEeeCCCCEEEEecCCCc
Confidence 99999999999999988653
No 23
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.7e-38 Score=346.83 Aligned_cols=289 Identities=16% Similarity=0.243 Sum_probs=264.0
Q ss_pred ecCCCCCeEEEEEcCC----CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 384 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
+.+|.+.|.+++|+|+ +++|++|+.|++|+|||+.+++. .....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 67999999999999999987653 22336789999999999999999 89999999999
Q ss_pred EEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 460 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
++||+.+++.+..+..|...+.+++|+| ++++|++++.||.|++|++++......+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999999999999999999999999954 77899999999999999999999988888888999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++++.||.|++||+.+++....+..+.. .|.+
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~--~v~~ 253 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS--WVLN 253 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSS--CEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCC--ceEE
Confidence 86 6679999999999999999888 8999999999999999999999999999999999998886644 6999
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
++|+|++++|++++.|+.|++||+.+++++..+.+|...|.+++|+ ++++.+++++.|
T Consensus 254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d 311 (321)
T 3ow8_A 254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD 311 (321)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999997 678889999999
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
++|++||..
T Consensus 312 ~~i~vwd~p 320 (321)
T 3ow8_A 312 QEIHIYDCP 320 (321)
T ss_dssp CCEEEEECC
T ss_pred CeEEEEeCC
Confidence 999999963
No 24
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=5.4e-38 Score=350.02 Aligned_cols=306 Identities=16% Similarity=0.251 Sum_probs=251.1
Q ss_pred ceeeecccCCC-CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSS-SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~-~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
.++++|.+|.+ .|++++|||||++||+++.| ++|+|||+.+...........+|...|.+++|+|+|++|
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D---------~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l 76 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGD---------RRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYL 76 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETT---------SCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCC---------CeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEE
Confidence 46788999988 99999999999999999988 999999998765444444457899999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc---eeeEeccCCCcE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEGHGAPV 480 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~---~~~~~~~h~~~v 480 (1084)
|+|+.|++|+|||+.++.. .....+.+|...|.+++|+|+++ +|++|+.|++|++||+.++. ++..+.+|...|
T Consensus 77 ~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v 153 (345)
T 3fm0_A 77 ASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDV 153 (345)
T ss_dssp EEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCE
T ss_pred EEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCe
Confidence 9999999999999987642 22347889999999999999999 89999999999999998764 456788999999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc-
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG- 557 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~- 557 (1084)
.+++|+| ++.+|++++.|+.|++||...... ...+..|...|.+++|+|+|++|++++. ++.|++||....
T Consensus 154 ~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW~~~~~~ 227 (345)
T 3fm0_A 154 KHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIWRQYLPG 227 (345)
T ss_dssp EEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEEECTT
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEeccccCC
Confidence 9999965 668999999999999999987653 4577888999999999999999999986 667999986321
Q ss_pred --------------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE-------EEEEcCCCCCCC
Q 001403 558 --------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL-------LTTIDAGGGLPE 616 (1084)
Q Consensus 558 --------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~-------~~~~~~~~~~~~ 616 (1084)
+++..+.+. |...|.+++|+|++..+++++.|+.|++|+...+.. .......++...
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 228 NEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp CTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 233344441 237899999999999999999999999999875421 111111234457
Q ss_pred cceEEEecCC-CEEEEEECCCeEEEEEcCCCCeee
Q 001403 617 NPRICFNKNG-TLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 617 v~~v~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~ 340 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH 340 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence 9999999987 599999999999999999876543
No 25
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=345.64 Aligned_cols=296 Identities=13% Similarity=0.161 Sum_probs=228.0
Q ss_pred ccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
+...|.+++|+|||+.|++++ |+++++|+.. +.+|+................+...|.+++|+|
T Consensus 29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 92 (344)
T 4gqb_B 29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGS---------------LWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG 92 (344)
T ss_dssp CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEE---------------EEEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred ccCCEEEEEECCCCCEEEEEe-CCceEEeece---------------eeeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence 566799999999999777665 7788888732 122221111100000011112567899999999
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEE----EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR 880 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~ 880 (1084)
++.+++.+.||+|++||+.+++.... +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~ 171 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ 171 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence 97655444489999999998876543 458999999999999 8999999999999999999999999999999999
Q ss_pred EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC-CCEEEEE-eCCeEEEEEcC
Q 001403 881 VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAE 957 (1084)
Q Consensus 881 V~~l~~spd~~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~-~d~~i~vwd~~ 957 (1084)
|++++|+|++. +|++++.|++|++||+.+++.... +.. ..+. ..+.+++|+|+ +++|+++ .|++|++||+.
T Consensus 172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~ 245 (344)
T 4gqb_B 172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK 245 (344)
T ss_dssp EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence 99999999984 789999999999999998764331 111 1111 25889999995 5677774 78999999999
Q ss_pred CcceeeEeecCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCC
Q 001403 958 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1036 (1084)
Q Consensus 958 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1036 (1084)
+++++.. +.+|...|++++|+||| ++|++++.||+|+|||+.++++.. +. .|.+.|+ +++|+|++..
T Consensus 246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--------~H~~~V~--~v~~sp~~~~ 313 (344)
T 4gqb_B 246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--------AHRDFVR--DATWSPLNHS 313 (344)
T ss_dssp C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--------CCSSCEE--EEEECSSSTT
T ss_pred CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--------CCCCCEE--EEEEeCCCCe
Confidence 9999887 55899999999999998 579999999999999999998653 22 1455565 6889996455
Q ss_pred EEEEEeCCCcEEEEcCCCC
Q 001403 1037 QFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1037 ~l~~~~~dg~v~vw~~~~~ 1055 (1084)
+|++++.||+|++|++...
T Consensus 314 llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 314 LLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp EEEEEETTSCEEEEECCC-
T ss_pred EEEEEcCCCeEEEEECCCC
Confidence 7889999999999999654
No 26
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=100.00 E-value=8.7e-38 Score=349.52 Aligned_cols=299 Identities=11% Similarity=0.112 Sum_probs=241.7
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-eeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-ALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|...|.+++|||||++||+++.| ...+.++.+++|+..++...... ....+|...|.+++|+|++++ ++++.|
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d---~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~-l~~s~d 114 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSL---SSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGI-LVASDS 114 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECS---SSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEE-EEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEcCC---CCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCE-EEEECC
Confidence 5799999999999999999998755 12333599999999775443221 124568899999999999865 467789
Q ss_pred CEEEEEEccCCccccce-eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
|+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++||+++++.+..+.+|...|.+++|++.
T Consensus 115 g~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~ 192 (357)
T 4g56_B 115 GAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPG 192 (357)
T ss_dssp SCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred CEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccC
Confidence 99999999988754322 24558999999999999999 8999999999999999999999999999999999999765
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
.+ .++++++.||.|++||+++.+....+ ..+...+.+++|+|++ .++++++. ++.|++||+.+++.+..+.+
T Consensus 193 ~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd~~~~~~~~~~~~ 267 (357)
T 4g56_B 193 KD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVNIKNPDSAQTSAV 267 (357)
T ss_dssp CS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEESSCGGGCEEECC
T ss_pred CC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEECCCCcEeEEEec
Confidence 33 47899999999999999987766544 3455679999999985 56777765 66799999999999999998
Q ss_pred cccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEEEEEc
Q 001403 566 LQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILET 643 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~ 643 (1084)
|. ..|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+. +...|.+++|+| ++.+|++++.||.|++|++
T Consensus 268 ~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~ 341 (357)
T 4g56_B 268 HS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHL 341 (357)
T ss_dssp CS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred cc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEEEEcCCCeEEEEEC
Confidence 88 899999999987 578899999999999999998887653 344699999998 8999999999999999999
Q ss_pred CCC
Q 001403 644 PES 646 (1084)
Q Consensus 644 ~~~ 646 (1084)
.+.
T Consensus 342 ~~~ 344 (357)
T 4g56_B 342 PSE 344 (357)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 27
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=100.00 E-value=1.4e-37 Score=344.61 Aligned_cols=299 Identities=14% Similarity=0.119 Sum_probs=237.3
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|...|.+++|||||++|++++ | .++ .+.++.+.+|+....... ........|...|.+++|+||+ .|++|+.|
T Consensus 27 ~~~~~~v~~~~fs~dG~~l~~~s-d-~~~-r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~d 102 (344)
T 4gqb_B 27 ACMERQLEAARYRSDGALLLGAS-S-LSG-RCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDS 102 (344)
T ss_dssp SSCCSEEEEEEECTTSCEEEEEE-C-CSS-SCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETT
T ss_pred ccccCCEEEEEECCCCCEEEEEe-C-Cce-EEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECC
Confidence 35666899999999999999876 3 010 111244444443221111 0111122366789999999985 68899999
Q ss_pred CEEEEEEccCCccccce-eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
|+|+|||+.+++.+... ..+.+|.+.|++++|+|+|+ +|++|+.|++|++||+++++++.++.+|...|.+++|++.
T Consensus 103 g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~ 180 (344)
T 4gqb_B 103 GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPH 180 (344)
T ss_dssp SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSS
T ss_pred CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCC
Confidence 99999999998765432 24568999999999999999 8999999999999999999999999999999999999764
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
+ ..++++++.||+|++||+++.+....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++++..+.+
T Consensus 181 ~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~~~~~~~~ 255 (344)
T 4gqb_B 181 K-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTSCVLSSAV 255 (344)
T ss_dssp C-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--CCEEEEC
T ss_pred C-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCcEEEEEcC
Confidence 3 2588999999999999999988777654 34557899999995 567777765 67799999999999999999
Q ss_pred cccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEc
Q 001403 566 LQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILET 643 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~ 643 (1084)
|. ..|.+++|+|++ ++|++|+.|++|+|||+.++++.. +..| ...|.+++|+|+++ +|++++.|++|++|++
T Consensus 256 h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~~v~~w~v 329 (344)
T 4gqb_B 256 HS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDHQVVHHVV 329 (344)
T ss_dssp CS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTSCEEEEEC
T ss_pred CC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCCeEEEEEC
Confidence 88 899999999998 578999999999999999988654 4444 44699999999886 6778999999999999
Q ss_pred CCC
Q 001403 644 PES 646 (1084)
Q Consensus 644 ~~~ 646 (1084)
.+.
T Consensus 330 ~~~ 332 (344)
T 4gqb_B 330 PTE 332 (344)
T ss_dssp CC-
T ss_pred CCC
Confidence 865
No 28
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.5e-36 Score=334.06 Aligned_cols=295 Identities=19% Similarity=0.309 Sum_probs=259.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
....++.+|.+.|.+++|+|||++||++..| +.|+||++.++.... .+.+|...|.+++|+|++++|+
T Consensus 14 ~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~d---------g~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~ 81 (312)
T 4ery_A 14 ALKFTLAGHTKAVSSVKFSPNGEWLASSSAD---------KLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSNLLV 81 (312)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETT---------SCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEE
T ss_pred eeEEEEcccCCcEEEEEECCCCCEEEEeeCC---------CeEEEEeCCCcccch---hhccCCCceEEEEEcCCCCEEE
Confidence 4567789999999999999999999999888 999999998765432 3678999999999999999999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+++.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|++|++||+++++.+..+..|..+|.+++
T Consensus 82 s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~ 156 (312)
T 4ery_A 82 SASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVH 156 (312)
T ss_dssp EEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE
T ss_pred EECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEE
Confidence 99999999999999987655 6789999999999999999 899999999999999999999999999999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
|++ ++.++++++.||.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.+++.+..+
T Consensus 157 ~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 230 (312)
T 4ery_A 157 FNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLKTY 230 (312)
T ss_dssp ECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEEEE
T ss_pred EcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEEEE
Confidence 955 67899999999999999999887766554 44567999999999999999886 667999999999999999
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--CCCeEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--NENRIKIL 641 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--~dg~i~iw 641 (1084)
.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.. .|.+++|+|+++++++++ .|+.|++|
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~--~v~~~~~~p~~~~l~s~~~~~d~~i~~W 308 (312)
T 4ery_A 231 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTD--VVISTACHPTENIIASAALENDKTIKLW 308 (312)
T ss_dssp CSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSS--CEEEEEECSSSSEEEEEECTTTCCEEEE
T ss_pred EecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCC--cEEEEeecCcCCceEEEEccCCccEEEe
Confidence 88773223333444457788999999999999999999999999987654 689999999999999997 69999999
Q ss_pred EcC
Q 001403 642 ETP 644 (1084)
Q Consensus 642 d~~ 644 (1084)
+..
T Consensus 309 ~~d 311 (312)
T 4ery_A 309 KSD 311 (312)
T ss_dssp ECC
T ss_pred cCC
Confidence 864
No 29
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=100.00 E-value=9e-37 Score=341.07 Aligned_cols=287 Identities=15% Similarity=0.172 Sum_probs=261.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.+++|+||+++||+|+.|++|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|+
T Consensus 60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~ 134 (354)
T 2pbi_B 60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP 134 (354)
T ss_dssp EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence 77899999999999999999999999999999999886544 6678899999999999999 899999999999999
Q ss_pred CCCC------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC--CCCE
Q 001403 464 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR 535 (1084)
Q Consensus 464 ~~~g------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--d~~~ 535 (1084)
+..+ .....+.+|...|.+++|++ ++..|++++.||+|++||+++++....+..|...+.+++|+| ++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~ 212 (354)
T 2pbi_B 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212 (354)
T ss_dssp CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence 8654 34567788999999999965 567999999999999999999999999999999999999987 5789
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
+++++. ++.|++||+++++.+..+.+|. ..|.+++|+|++..|++++.|++|++||+.+++.+..+..+....
T Consensus 213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~ 285 (354)
T 2pbi_B 213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF 285 (354)
T ss_dssp EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence 999986 6679999999999999999888 899999999999999999999999999999998888877655445
Q ss_pred CcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 616 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
.+.+++|+|+++++++++.|+.|++||+.++..+..+.+|...|.+++|+ |+++++++
T Consensus 286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s 343 (354)
T 2pbi_B 286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS 343 (354)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence 67899999999999999999999999999999999999999999999997 67889999
Q ss_pred ecccCcccccc
Q 001403 696 VEAENKSEVEK 706 (1084)
Q Consensus 696 ~~~d~~i~~w~ 706 (1084)
++.|+++++|+
T Consensus 344 gs~D~~v~vW~ 354 (354)
T 2pbi_B 344 GSWDHTLRVWA 354 (354)
T ss_dssp EETTSEEEEEC
T ss_pred EcCCCCEEecC
Confidence 99999999995
No 30
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.2e-37 Score=353.60 Aligned_cols=344 Identities=15% Similarity=0.208 Sum_probs=270.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEc----cCCccc---cceeeeec-----
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAY----HGGSDA---RQQLEIDA----- 431 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~----~~~~~~---~~~~~l~~----- 431 (1084)
..+.+|+++.....+.. ..|...|.+++|+|+|+ +||+++.|+.|++||+ .+++.+ .....+..
T Consensus 25 ~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (425)
T 1r5m_A 25 SIDSSDDLDGFVKILKE---IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALS 101 (425)
T ss_dssp ---------CCCEECEE---EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC
T ss_pred cccccccchhhhhheee---eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccccccccc
Confidence 44567777665544432 33678999999999999 9999999999999999 887620 01112222
Q ss_pred -----ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEE
Q 001403 432 -----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 506 (1084)
Q Consensus 432 -----h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iw 506 (1084)
|.+.|++++|+|+++ +|++++.|+.|++|| .+++.+..+.+|...|.+++|++ ++.+|++++.||.|++|
T Consensus 102 ~~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iw 176 (425)
T 1r5m_A 102 ASSGKTTNQVTCLAWSHDGN--SIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILW 176 (425)
T ss_dssp ------CBCEEEEEECTTSS--EEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEE
T ss_pred ccccCCCCceEEEEEcCCCC--EEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEE
Confidence 688999999999999 899999999999999 78889999999999999999955 67899999999999999
Q ss_pred ECCCCCceEeecCCCCe---------------EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 507 LYDSLGARVDYDAPGLG---------------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~---------------i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
|+.+.+....+..+... +.+++|++++. +++++. ++.|++||+.+++.+..+..|. .
T Consensus 177 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~---~ 248 (425)
T 1r5m_A 177 NVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHH---G 248 (425)
T ss_dssp ETTTTEEEEEECCC---------------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCS---S
T ss_pred ECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCC---C
Confidence 99988887777776665 88999999865 555554 6679999999988888887776 7
Q ss_pred ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeee
Q 001403 572 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 651 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 651 (1084)
.|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 249 ~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------------------------------------ 286 (425)
T 1r5m_A 249 PISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFY------------------------------------------ 286 (425)
T ss_dssp CEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEEC------------------------------------------
T ss_pred ceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEec------------------------------------------
Confidence 78888888888888888888888888776541111110
Q ss_pred ccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEE
Q 001403 652 AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR 731 (1084)
Q Consensus 652 ~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~ 731 (1084)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEE
Q 001403 732 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 811 (1084)
Q Consensus 732 l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~ 811 (1084)
.|...+.+++|+|++ ++++
T Consensus 287 ------------------------------------------------------------~~~~~i~~~~~~~~~-~l~~ 305 (425)
T 1r5m_A 287 ------------------------------------------------------------GHSQSIVSASWVGDD-KVIS 305 (425)
T ss_dssp ------------------------------------------------------------CCSSCEEEEEEETTT-EEEE
T ss_pred ------------------------------------------------------------CCCccEEEEEECCCC-EEEE
Confidence 134456667777777 5666
Q ss_pred Ee-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce--------------------e
Q 001403 812 AS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE--------------------V 870 (1084)
Q Consensus 812 ~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~--------------------~ 870 (1084)
++ ++.|++||+.+++.+..+..|...|.+++|+| ++++|++++.||.|++||+.+++ .
T Consensus 306 ~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (425)
T 1r5m_A 306 CSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL 384 (425)
T ss_dssp EETTSEEEEEETTTTEEEEEEECTTCCEEEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE
T ss_pred EeCCCcEEEEECCCCcEeEecccCCccEEEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence 55 67888888888888888888999999999999 89999999999999999999988 8
Q ss_pred eeeeccccc--CEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 871 ISKLEGHSK--RVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 871 ~~~l~~h~~--~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
+..+.+|.. .|++++|+|++++|++++.||.|++||++
T Consensus 385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 385 YASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 899999976 99999999999999999999999999986
No 31
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=100.00 E-value=1.4e-36 Score=332.10 Aligned_cols=270 Identities=19% Similarity=0.249 Sum_probs=242.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|.+.|.+++|+|||++||+++.||+|++||+.++..++ .+..|..+|.+++|+|+++ +|++|+.|++|++|
T Consensus 8 ~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vw 82 (304)
T 2ynn_A 8 TFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVF 82 (304)
T ss_dssp EEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999987655 6788999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcC-CCCEEEEEe
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCG 540 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-d~~~l~~~~ 540 (1084)
|+.+++.+..+.+|...|.+++|+| ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..+++++
T Consensus 83 d~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs 160 (304)
T 2ynn_A 83 NYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGC 160 (304)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEE
T ss_pred ECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEe
Confidence 9999999999999999999999965 668999999999999999987744 456788999999999999 678999998
Q ss_pred eCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 541 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. ++.|++||+.++.....+..+. ...+..+.|+| ++.++++++.|++|++||+.+++++..+..|.. .|.
T Consensus 161 ~----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~ 232 (304)
T 2ynn_A 161 L----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVS 232 (304)
T ss_dssp T----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEE
T ss_pred C----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEE
Confidence 6 7779999998877666655433 36788899986 678999999999999999999999999987654 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
+++|+|++.+|++++.||.|++||..+++....+..+...+.+++++|.
T Consensus 233 ~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (304)
T 2ynn_A 233 FAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPT 281 (304)
T ss_dssp EEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTT
T ss_pred EEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCC
Confidence 9999999999999999999999999999999999999999999998854
No 32
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-37 Score=352.29 Aligned_cols=327 Identities=13% Similarity=0.155 Sum_probs=281.7
Q ss_pred cCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEc----CCccc------ccee-eeec------CCCCCeEE
Q 001403 332 EGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDI----GACSM------LFKT-ALVR------DPGVSVNR 393 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~----~~~~~------~~~~-~~~~------~h~~~V~~ 393 (1084)
.|.+.|.+++|+|||+ +||++..| +.|+|||+ .++.. .... ..+. +|...|.+
T Consensus 43 ~~~~~v~~~~~s~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (425)
T 1r5m_A 43 VKLDNIVSSTWNPLDESILAYGEKN---------SVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTC 113 (425)
T ss_dssp EECSCCSEEEECSSCTTEEEEEETB---------TEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEE
T ss_pred eccCceEEEEECCCCCcEEEEecCC---------ceEEEEEEecccCCccccccccccccccccccccccccCCCCceEE
Confidence 4568999999999999 99999888 99999999 76652 2111 1122 26889999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|+|++|++++.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++||+.+++.+..+
T Consensus 114 ~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~ 187 (425)
T 1r5m_A 114 LAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQHF 187 (425)
T ss_dssp EEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEEe
Confidence 99999999999999999999999 4444333 6779999999999999999 8999999999999999999999999
Q ss_pred ccCCCc---------------EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 474 EGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 474 ~~h~~~---------------v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
..+... +.+++|++. ..+++++.+|.|++||+........+..+...+.+++|+|+++++++
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~ 264 (425)
T 1r5m_A 188 ELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLS 264 (425)
T ss_dssp CCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEE
T ss_pred eccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEE
Confidence 888777 888888653 46999999999999999999888888889999999999999999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++. ++.|++||+.+++.+..+..|. ..+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.
T Consensus 265 ~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~i~ 334 (425)
T 1r5m_A 265 ASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV--PIF 334 (425)
T ss_dssp EET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--CEE
T ss_pred EcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--cEE
Confidence 985 6679999999999999988877 899999999999 999999999999999999999998886544 689
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcCCCC--------------------eeeecccccc--ceeEEEEcCCCceeeeecc
Q 001403 619 RICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~~~~--------------------~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~ 676 (1084)
+++|+|++++|++++.||.|++|++.++. .+..+..|.. .|.+++|+
T Consensus 335 ~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------- 403 (425)
T 1r5m_A 335 AGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------- 403 (425)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC-----------
T ss_pred EEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc-----------
Confidence 99999999999999999999999999877 7788888866 88888887
Q ss_pred CceeEecCCCCCCCCccceecccCccccccce
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+++++++++.||.+++|++.
T Consensus 404 -----------~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 404 -----------CAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp -----------TTSSEEEEEESSSCCEEEECC
T ss_pred -----------CCCceEEEEecCceEEEEeec
Confidence 678889999999999999974
No 33
>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*
Probab=100.00 E-value=6.2e-36 Score=329.33 Aligned_cols=297 Identities=21% Similarity=0.272 Sum_probs=253.0
Q ss_pred eecCCCCCeEEEEEcCCC-CEEEEEeCCCEEEEEEccCCcc--ccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcE
Q 001403 383 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI 459 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg-~~las~~~dg~v~iwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i 459 (1084)
.+.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+... -.....+.+|...|.+++|+|+++ ++++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 478999999999999965 8999999999999999975432 123447889999999999999999 89999999999
Q ss_pred EEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC------C
Q 001403 460 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G 533 (1084)
Q Consensus 460 ~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------~ 533 (1084)
++||+.+++.+..+.+|...|.+++|++ ++.+|++++.||+|++||++ ......+..+...+.+++++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999999999999999999999999955 66899999999999999996 4566677888899999999985 4
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 613 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 613 (1084)
..+++++. ++.|++||+.+++....+.+|. ..|.+++|+|++++|++++.||.|++||+.+++.+..+..+.
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~- 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQD- 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECCS-
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC-
Confidence 47888876 6679999999999999999888 899999999999999999999999999999999999887543
Q ss_pred CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 614 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 614 ~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
.+.+++|+|++.++++++.+ .+++|++.....+..+..+...
T Consensus 239 --~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~----------------------------------- 280 (319)
T 3frx_A 239 --EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG----------------------------------- 280 (319)
T ss_dssp --CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred --cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence 48999999999999988764 6999998865444333211000
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccC
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~ 757 (1084)
....+...+.+++|+|||++|++++.||.|++|++..
T Consensus 281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 0012456788999999999999999999999998753
No 34
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-36 Score=335.25 Aligned_cols=297 Identities=17% Similarity=0.186 Sum_probs=235.3
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecC-CCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~l 403 (1084)
+++++|.+|.+.|++++|+|+ +||+++.| ++|+|||+.+........+..+ |...|.+++|+|++++|
T Consensus 5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D---------~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l 73 (330)
T 2hes_X 5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTD---------RKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLL 73 (330)
T ss_dssp EEEEEEECCSSCEEEEEEETT--EEEEEESS---------SCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEE
T ss_pred ccceeeccCCCceeeeccCCC--EEEEEcCC---------CEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEE
Confidence 457789999999999999998 99999888 9999999987543222222134 99999999999999999
Q ss_pred EEEeCCCEEEEEEccCCc----cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC----CceeeEecc
Q 001403 404 GVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEG 475 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~----g~~~~~~~~ 475 (1084)
|+|+.|++|+|||+..+. .......+.+|...|.+++|+|+++ +|++|+.|++|++||+.. .+++..+.+
T Consensus 74 as~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~~~~ 151 (330)
T 2hes_X 74 AAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISVLQE 151 (330)
T ss_dssp EEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEEECC
T ss_pred EEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEEecc
Confidence 999999999999996432 1223446789999999999999999 899999999999999943 256778899
Q ss_pred CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC--CceEeecCCCCeEEEEEEcCC--CCEEEEEeeCCCCCeeEEE
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--~~~l~~~~~~~~~~~~i~~ 551 (1084)
|...|.+++|+| ++.+|++++.|++|++||.... .....+..|...|.+++|+|+ +.+|++++. ++.|++
T Consensus 152 h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~v~i 225 (330)
T 2hes_X 152 HSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DSTVRV 225 (330)
T ss_dssp CSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSCEEE
T ss_pred CCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCeEEE
Confidence 999999999965 6689999999999999998765 456678889999999999999 778998886 667999
Q ss_pred ecCCCc--------eEeeeeec-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE--EEEEcCCCCCC-Ccce
Q 001403 552 WNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLP-ENPR 619 (1084)
Q Consensus 552 wd~~~~--------~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~~ 619 (1084)
||+.++ .....+.+ |. ..|.+++|++++ .|++++.||.|++||..+++. ..... ..+.. .|.+
T Consensus 226 w~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~h~~~~v~~ 300 (330)
T 2hes_X 226 WKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LCHGVYEINV 300 (330)
T ss_dssp EEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CTTTTSCEEE
T ss_pred EEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cccccceEEE
Confidence 998765 33444444 44 889999999765 899999999999999988743 32321 22233 5899
Q ss_pred EEEec--CCCEEEEEECCCeEEEEEcCC
Q 001403 620 ICFNK--NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 620 v~~s~--~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++|+| ++++|++++.||.|++|++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
No 35
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=3.8e-36 Score=334.95 Aligned_cols=324 Identities=13% Similarity=0.166 Sum_probs=271.9
Q ss_pred CCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 333 GSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 333 h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
|.+.|.+++|||||+++|++..+ +.+.+|.......... ..+|...|.+++|+|++++|++++ ||.|
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~---------~~~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~l~~~~-dg~i 74 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPP---------DALIGPGIPRHARQIN---TLNHGEVVCAVTISNPTRHVYTGG-KGCV 74 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCT---------TSSSSTTCCSEEEEEE---EECCSSCCCEEEECSSSSEEEEEC-BSEE
T ss_pred cCCceeEEEECCCCCEEEeecCC---------CcEeccccCCccccce---eccCCCceEEEEEecCCcEEEEcC-CCeE
Confidence 45689999999999999986544 3344454443333222 346999999999999999999999 9999
Q ss_pred EEEEccCCccccceeeee--cccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcEEEEeeccc
Q 001403 413 QLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~v~~~~~~~~ 488 (1084)
++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++||+.+++ ....+..|...|.+++|++
T Consensus 75 ~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~- 151 (337)
T 1gxr_A 75 KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP- 151 (337)
T ss_dssp EEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-
T ss_pred EEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECC-
Confidence 999999887655544444 7999999999999999 89999999999999999887 6677889999999999965
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 568 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~ 568 (1084)
++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+..+.. .
T Consensus 152 -~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~~~~~~-~- 224 (337)
T 1gxr_A 152 -DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQLQQHDF-T- 224 (337)
T ss_dssp -TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEEEEEEC-S-
T ss_pred -CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceEeeecC-C-
Confidence 6789999999999999999998888888889999999999999999999985 67799999999998877753 3
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
..+.+++|+|+++++++++.++.|++||+.+++... +..+ ...+.+++|+|+++++++++.||.|++|++.+++.
T Consensus 225 --~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~ 299 (337)
T 1gxr_A 225 --SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGAS 299 (337)
T ss_dssp --SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred --CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEEEECCCCeE
Confidence 689999999999999999999999999999887653 3333 34699999999999999999999999999987754
Q ss_pred eeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccce
Q 001403 649 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK 728 (1084)
Q Consensus 649 ~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 728 (1084)
+... .+...
T Consensus 300 ~~~~-----------------------------------------------------------------------~~~~~ 308 (337)
T 1gxr_A 300 IFQS-----------------------------------------------------------------------KESSS 308 (337)
T ss_dssp EEEE-----------------------------------------------------------------------ECSSC
T ss_pred EEEe-----------------------------------------------------------------------cCCCc
Confidence 4211 14456
Q ss_pred EEEEEEecCCCeEEEeecCCceEEeec
Q 001403 729 ISRLTYNNGGQAIFALASNGVHLMWRW 755 (1084)
Q Consensus 729 i~~l~~s~~g~~l~~~~~dg~i~vw~~ 755 (1084)
+.+++|+|+++.+++++.||.+++|++
T Consensus 309 v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 309 VLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 788888899988888888999998875
No 36
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=2.2e-36 Score=337.01 Aligned_cols=298 Identities=17% Similarity=0.278 Sum_probs=245.0
Q ss_pred cceeeecccCCCCceEEEE-----cC-CCceeeeecccccCccccccceEEEEEcCCccc----cceeeeecCCCCCeEE
Q 001403 324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM----LFKTALVRDPGVSVNR 393 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~----~~~~~~~~~h~~~V~~ 393 (1084)
..+..+|.+|++.|++++| +| ||++||+|+.| ++|+|||+.+... ......+.+|...|.+
T Consensus 11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D---------~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~ 81 (343)
T 2xzm_R 11 VVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRD---------KTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSD 81 (343)
T ss_dssp EEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETT---------SCEEEEEECSSCCSSBSEEEEEEECCCSSCEEE
T ss_pred eeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCC---------CEEEEEECCcCCcccccccccchhccCCCceEE
Confidence 3466789999999999999 77 99999999988 9999999975432 1123357899999999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|++.+|++++.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+.. ......
T Consensus 82 ~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~-~~~~~~ 155 (343)
T 2xzm_R 82 LALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILG-ECKFSS 155 (343)
T ss_dssp EEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSS-CEEEEC
T ss_pred EEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccC-Cceeee
Confidence 9999999999999999999999999987655 6789999999999999999 899999999999999874 333333
Q ss_pred ---ccCCCcEEEEeecccCC--------CcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 474 ---EGHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 474 ---~~h~~~v~~~~~~~~~~--------~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.+|...|.+++|++... +.++++++.||.|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 156 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~- 233 (343)
T 2xzm_R 156 AEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK- 233 (343)
T ss_dssp CTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred ecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC-
Confidence 37899999999976432 268999999999999994 44556677888999999999999999999986
Q ss_pred CCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EEcCC--------
Q 001403 543 KEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG-------- 611 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~-------- 611 (1084)
++.|++||+.+ ......+. +. ..|.+++|+|++.+++++ .|+.|++||+.+++... .+...
T Consensus 234 ---dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 305 (343)
T 2xzm_R 234 ---DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQ 305 (343)
T ss_dssp ---TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTB
T ss_pred ---CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhh
Confidence 77799999944 43444432 22 569999999999877654 57889999998876543 33211
Q ss_pred -CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 612 -GGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 612 -~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus 306 ~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 306 KGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred cCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 33456899999999999999999999999998653
No 37
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=4.9e-36 Score=340.84 Aligned_cols=285 Identities=15% Similarity=0.281 Sum_probs=245.0
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCC------------------CCCeEE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP------------------GVSVNR 393 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h------------------~~~V~~ 393 (1084)
+|.+.|.+++|||||++||++. | ++++||++.++..... +.+| ...|.+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~---------~~v~i~~~~~g~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~v~~ 128 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-N---------KTTQVYRVSDGSLVAR---LSDDSAANKDPENLNTSSSPSSDLYIRS 128 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-B---------SCEEEEETTTCCEEEE---ECC-----------------CCCCBEEE
T ss_pred CCCCEEEEEEECCCCCEEEEEc-C---------CcEEEEEecCCCEEEE---ecCccccccccccccccccCCCceeEEE
Confidence 6999999999999999999974 4 7899999987765432 2222 235999
Q ss_pred EEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe
Q 001403 394 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 394 v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~ 473 (1084)
++|+|||++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|+++ .|++++.|++|++||++++++...+
T Consensus 129 v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~ 203 (393)
T 1erj_A 129 VCFSPDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTL 203 (393)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEE
Confidence 9999999999999999999999999986554 6789999999999999999 8999999999999999999988877
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
. +...+.++++++. ++.++++++.||.|++||+.++.....+ ..|...|.+++|+|+|++|++++. +
T Consensus 204 ~-~~~~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d 277 (393)
T 1erj_A 204 S-IEDGVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----D 277 (393)
T ss_dssp E-CSSCEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred E-cCCCcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----C
Confidence 6 5677999999653 6689999999999999999988766555 467789999999999999999986 6
Q ss_pred eeEEEecCCCc------------eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 547 SFLVEWNESEG------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 547 ~~i~~wd~~~~------------~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+.|++||+.+. .+...+.+|. ..|.+++|+|++.+|++|+.||.|++||..+++.+..+..|..
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~- 353 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN- 353 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC-
Confidence 77999998763 3455667777 8899999999999999999999999999999999999887654
Q ss_pred CCcceEEEec------CCCEEEEEECCCeEEEEEcCC
Q 001403 615 PENPRICFNK------NGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 615 ~~v~~v~~s~------~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.|.+++|++ ++++|++++.||.|++|+...
T Consensus 354 -~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 354 -SVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp -CEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred -CEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 689999886 688999999999999999764
No 38
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.4e-37 Score=347.03 Aligned_cols=291 Identities=15% Similarity=0.165 Sum_probs=256.8
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|+|++||+|+.|++|+|||+.+++... .+..|...|.+++|+|+|+ ++++|+.|+.|++|
T Consensus 61 ~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw 135 (380)
T 3iz6_a 61 TLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIF 135 (380)
T ss_dssp EECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEE
T ss_pred cccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEE
Confidence 378999999999999999999999999999999999986554 7789999999999999999 89999999999999
Q ss_pred ECCCCc-------eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-----cCCCCeEEEEEEc
Q 001403 463 DAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYS 530 (1084)
Q Consensus 463 d~~~g~-------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s 530 (1084)
|+.+.. ....+.+|.+.|.++.|.+.. +..|++++.|++|++||+.+++....+ ..|...+.+++|+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~-~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 214 (380)
T 3iz6_a 136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQ-ETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN 214 (380)
T ss_dssp ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSS-SSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred ECCCCccccCCccceeeccCCCcceEEEEEecCC-CCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence 987532 345678999999999997653 457999999999999999998877666 5677789999997
Q ss_pred C-CCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 531 A-NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 531 ~-d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
+ +++++++++. ++.|++||++ +++.+..+.+|. ..|.+++|+|++++|++|+.||+|++||+.+++.+..+
T Consensus 215 ~~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~ 287 (380)
T 3iz6_a 215 SLNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVY 287 (380)
T ss_dssp SSSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEE
T ss_pred cCCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEe
Confidence 7 8899999986 6679999998 557788888888 89999999999999999999999999999999999888
Q ss_pred cCCCC-----CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec----cccccceeEEEEcCCCceeeeeccCce
Q 001403 609 DAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGS 679 (1084)
Q Consensus 609 ~~~~~-----~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~~p~~~~~~~~~~~~~ 679 (1084)
..+.. ...+.+++|+|+|+++++|+.||.|++||...++....+ .+|...|.+++|+
T Consensus 288 ~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s-------------- 353 (380)
T 3iz6_a 288 NREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS-------------- 353 (380)
T ss_dssp CCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC--------------
T ss_pred cccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC--------------
Confidence 65422 234789999999999999999999999999988877666 6788999999997
Q ss_pred eEecCCCCCCCCccceecccCccccccce
Q 001403 680 VSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 680 ~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|++.++++++.|+++++|++.
T Consensus 354 --------~dg~~l~sgs~D~~i~iW~~~ 374 (380)
T 3iz6_a 354 --------SDGSALCTGSWDKNLKIWAFS 374 (380)
T ss_dssp --------SSSSEEEEECTTSCEEEEECC
T ss_pred --------CCCCEEEEeeCCCCEEEEecC
Confidence 678899999999999999976
No 39
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=100.00 E-value=1.8e-35 Score=325.33 Aligned_cols=291 Identities=20% Similarity=0.287 Sum_probs=259.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++|+|+|++||+++.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 377899999999999999999999999999999999887554 6789999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
|+++++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+..+...+.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9999999999999999999999965 6689999999999999999999988899999999999999999999999986
Q ss_pred CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 543 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++.|++||+.+++.+..+.... ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 244 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF 244 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence 6679999999998877765433 36799999999999999999999999999999999999887655333334445
Q ss_pred e-cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec--cc
Q 001403 623 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE 699 (1084)
Q Consensus 623 s-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~--~d 699 (1084)
+ +++.++++++.||.|++||+.+++.+..+.+|...+.+++++ |++..+++++ .|
T Consensus 245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d 302 (312)
T 4ery_A 245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND 302 (312)
T ss_dssp ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence 4 678899999999999999999999999999999999999998 5566677775 68
Q ss_pred Cccccccce
Q 001403 700 NKSEVEKPL 708 (1084)
Q Consensus 700 ~~i~~w~~~ 708 (1084)
+++++|+.+
T Consensus 303 ~~i~~W~~d 311 (312)
T 4ery_A 303 KTIKLWKSD 311 (312)
T ss_dssp CCEEEEECC
T ss_pred ccEEEecCC
Confidence 999999864
No 40
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=100.00 E-value=8.7e-36 Score=332.16 Aligned_cols=297 Identities=17% Similarity=0.213 Sum_probs=238.3
Q ss_pred ccc-eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEec
Q 001403 725 KAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS 803 (1084)
Q Consensus 725 ~~~-~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 803 (1084)
|.. .|..++|+|+|+.|++++.|+.|++|++..+.. .....+ ..+|...|.+++|+
T Consensus 14 h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~s 70 (345)
T 3fm0_A 14 HPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAWS 70 (345)
T ss_dssp STTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEEC
T ss_pred CCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEEC
Confidence 665 899999999999999999999999999764321 000000 11488999999999
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCc--eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---eeeeeeccc
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGH 877 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---~~~~~l~~h 877 (1084)
|+|++|++++ |+++++|++.++ +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++ +++..+.+|
T Consensus 71 p~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h 149 (345)
T 3fm0_A 71 PCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH 149 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC
T ss_pred CCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc
Confidence 9999999998 899999999876 46788999999999999999 8999999999999999999876 456778899
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeCCeEEEEEc
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEA 956 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d~~i~vwd~ 956 (1084)
...|.+++|+|++++|++++.|++|++||+..+.. .+.....+|.. .|.+++|+|+|++||+ +.|++|++|+.
T Consensus 150 ~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~---~~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~~ 223 (345)
T 3fm0_A 150 TQDVKHVVWHPSQELLASASYDDTVKLYREEEDDW---VCCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWRQ 223 (345)
T ss_dssp CSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEE---EEEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred CCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCE---EEEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence 99999999999999999999999999999987542 23344556655 8999999999999999 58899999996
Q ss_pred CCc---------------ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee----EEeccccccCCC
Q 001403 957 EEL---------------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ----CRILSTAYLRPT 1017 (1084)
Q Consensus 957 ~~~---------------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~----~~~~~~~~~~~~ 1017 (1084)
... +++..+...|...|.+++|+|++.+|++++.|+.|++|+...+... ..+. .....
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~--~~~~~- 300 (345)
T 3fm0_A 224 YLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT--AHLHQ- 300 (345)
T ss_dssp ECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE--EEETT-
T ss_pred ccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE--eeecc-
Confidence 321 2334444448999999999999999999999999999998865321 1111 00111
Q ss_pred CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1018 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1018 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.|...|. +++|+|+++.+|++|+.||+|++|++....
T Consensus 301 ~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 301 AHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp SSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred cccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 1344455 789999644699999999999999996655
No 41
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-37 Score=352.56 Aligned_cols=358 Identities=13% Similarity=0.182 Sum_probs=272.0
Q ss_pred CCceEEEEcCCCc-eeeeecccccCccc----cccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 335 SSPMSMDFHPVQH-TLLLGLWDVNSGQK----LFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 335 ~~V~~v~~spdg~-~las~~~d~~sg~~----~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..|.+++|||||+ +||++..+ |.. -.++.|+|||+.+........ ...|...|.+++|+|++++||+++.|
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~---g~~~~~~~~d~~v~iw~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~d 88 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVS---GTVDANFSTDSSLELWSLLAADSEKPIA-SLQVDSKFNDLDWSHNNKIIAGALDN 88 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBS---SCCCSSCCCCCCCEEEESSSGGGCSCSC-CCCCSSCEEEEEECSSSSCEEEEESS
T ss_pred hhcceEeeCCCCCCEEEEEecC---cccccccCCCCeEEEEEccCCCCCcEEE-EEecCCceEEEEECCCCCeEEEEccC
Confidence 4789999999997 89998221 100 012899999998865321111 23588999999999999999999999
Q ss_pred CEEEEEEccCCcc-ccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCc------eee---EeccCCC
Q 001403 410 HIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS------RTY---SFEGHGA 478 (1084)
Q Consensus 410 g~v~iwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~------~~~---~~~~h~~ 478 (1084)
|.|++||+.+... ......+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++ ... .+.+|..
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 166 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVD 166 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccccccccccccccCCCC
Confidence 9999999987211 1233467899999999999998 66 79999999999999999887 333 3467999
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC------CCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEE
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLFSCGTSKEGESFLVE 551 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~ 551 (1084)
.|.+++|++. ++.++++++.||.|++||+++.+....+..+ ...+.+++|+|++ .++++++.++ .++.|++
T Consensus 167 ~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~-~~~~i~~ 244 (416)
T 2pm9_A 167 EVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSD-NDPSILI 244 (416)
T ss_dssp CCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCS-SSCCCCE
T ss_pred CeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCC-CCceEEE
Confidence 9999999664 1579999999999999999998888777766 6789999999997 5788776522 1227999
Q ss_pred ecCCCc-eEeeeee-ccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCC-C
Q 001403 552 WNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-T 627 (1084)
Q Consensus 552 wd~~~~-~~~~~~~-~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~-~ 627 (1084)
||++++ ..+..+. +|. ..|.+++|+| ++++|++++.||.|++||+.+++.+..+..+.. .|.+++|+|++ .
T Consensus 245 ~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~--~v~~~~~s~~~~~ 319 (416)
T 2pm9_A 245 WDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGN--WCFKTKFAPEAPD 319 (416)
T ss_dssp EETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSS--CCCCEEECTTCTT
T ss_pred EeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCC--ceEEEEECCCCCC
Confidence 999986 6667777 777 8999999999 899999999999999999999999999986654 68999999998 8
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeeccc--cccceeEEEEcCCCceee---------------eeccCceeEecCCCCCCC
Q 001403 628 LLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~~p~~~~~~---------------~~~~~~~~~~~~~~s~~~ 690 (1084)
++++++.|+.|++|++.+......... .........+.+.....+ .......++| +|+|
T Consensus 320 ~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----s~dg 395 (416)
T 2pm9_A 320 LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHW----AFGG 395 (416)
T ss_dssp EEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEE----ETTT
T ss_pred EEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEE----eeCC
Confidence 999999999999999987754332211 000000011111100000 0001113334 6899
Q ss_pred CccceecccCcccccccee
Q 001403 691 KPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~~ 709 (1084)
+++++++.|++|++|++.+
T Consensus 396 ~~la~~~~d~~v~~w~~~~ 414 (416)
T 2pm9_A 396 KLVQITPDGKGVSITNPKI 414 (416)
T ss_dssp EEECBCTTSSCBCCBCCCC
T ss_pred eEEEEeCCCCeEEEEEecc
Confidence 9999999999999999863
No 42
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=1e-34 Score=372.30 Aligned_cols=526 Identities=11% Similarity=0.000 Sum_probs=374.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC------CCcEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIK 460 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~------d~~i~ 460 (1084)
+...+.+++||| +.||.++. +.|.+|++.+++.. .+.+|...+.+++|||||+ .|++++. +..|+
T Consensus 13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~ 83 (1045)
T 1k32_A 13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY 83 (1045)
T ss_dssp CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence 456889999995 58888876 68999999987532 5778999999999999999 5666543 24799
Q ss_pred EEECCCCceeeEeccCCCcE-------EEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 461 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~h~~~v-------~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
+||+.+++ ...+..|...+ ..++|+| ||+++++++.+ ..|..|++..+........ ....+
T Consensus 84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~---~~~~~ 157 (1045)
T 1k32_A 84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLG---PATHI 157 (1045)
T ss_dssp EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSC---SCSEE
T ss_pred EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEEecCC---Cccee
Confidence 99998876 57788898888 8999965 66777777754 3577777765543322222 22356
Q ss_pred EEcCCCCEEEEEeeCCC--------CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 528 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~--------~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+|+| | ++++++.+.+ +.....+|....+.....+.+|. ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus 158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~ 231 (1045)
T 1k32_A 158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST 231 (1045)
T ss_dssp EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence 7999 8 7777643211 12234455333223444556666 88999999988 56667788899999976
Q ss_pred CC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccc-----------cccceeEEEEcCC
Q 001403 600 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-----------LSDNLRKLSVNPI 667 (1084)
Q Consensus 600 ~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~i~~~~~~p~ 667 (1084)
.. +.....+..+. .+...+|+|||+.++++. ++.|++|+.... .+..+.. +...+.+++|+|
T Consensus 232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~-~l~~l~~~~~~~~~~~~~~~~~v~~~~~S~- 305 (1045)
T 1k32_A 232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE-KIEKIEIGDLESPEDRIISIPSKFAEDFSP- 305 (1045)
T ss_dssp ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTC-CEEECCCCCCCBCCSEEEECGGGGEEEEEE-
T ss_pred eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCce-EeeeeccCcccccccccccccccceeeecC-
Confidence 53 33444444333 356789999999998884 789999998443 3334433 122344555540
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccc-eEEEEEEecCCCeEEEeec
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALAS 746 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~l~~s~~g~~l~~~~~ 746 (1084)
|+|+.+++++ ++.+.+|+...... .. + ..+.. .+..++|+ ||+.++.++.
T Consensus 306 --------------------pdG~~la~~~-~~~i~~~~~~~~~~---~~--~--~~~~~~~~~~~~~s-dg~~l~~~s~ 356 (1045)
T 1k32_A 306 --------------------LDGDLIAFVS-RGQAFIQDVSGTYV---LK--V--PEPLRIRYVRRGGD-TKVAFIHGTR 356 (1045)
T ss_dssp --------------------CGGGCEEEEE-TTEEEEECTTSSBE---EE--C--SCCSCEEEEEECSS-SEEEEEEEET
T ss_pred --------------------CCCCEEEEEE-cCEEEEEcCCCCce---EE--c--cCCCcceEEeeeEc-CCCeEEEEEC
Confidence 5666676666 67788888653221 11 1 12445 78999999 9999998887
Q ss_pred CCceE-EeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCC
Q 001403 747 NGVHL-MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMT 824 (1084)
Q Consensus 747 dg~i~-vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~ 824 (1084)
++.+. +|+... +. ... +. .+...+..++|||||++|++++ ++.|++||+.+
T Consensus 357 ~~~l~~~~d~~~----------------------~~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~t 409 (1045)
T 1k32_A 357 EGDFLGIYDYRT----------------------GK-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLET 409 (1045)
T ss_dssp TEEEEEEEETTT----------------------CC-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred CCceEEEEECCC----------------------CC-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCC
Confidence 66666 665432 22 111 11 2667889999999999999988 68999999999
Q ss_pred ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC----------eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEE
Q 001403 825 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 894 (1084)
Q Consensus 825 ~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg----------~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~ 894 (1084)
++....+.+|...+.+++||| ||++|++++.++ .|++||+.+++ +..+..|...+.+++|+|||++|+
T Consensus 410 g~~~~~~~~~~~~v~~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~ 487 (1045)
T 1k32_A 410 GKPTVIERSREAMITDFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLY 487 (1045)
T ss_dssp CCEEEEEECSSSCCCCEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEE
T ss_pred CceEEeccCCCCCccceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEE
Confidence 998888878888999999999 899888887644 99999999887 677888888899999999999999
Q ss_pred EEeCCCcEEEEeCCCCceeee-----eee--e---------------------cCCCC-------ccCCCCceEEEEccC
Q 001403 895 SSGGDAQIFVWDVDGWGIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKD 939 (1084)
Q Consensus 895 s~s~dg~I~iwd~~~~~~~~~-----~~~--~---------------------~~~~~-------~~~~~~v~~~~~s~d 939 (1084)
+++.++...+|+......... ..+ . ...+. ....+.+..++|+||
T Consensus 488 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~d 567 (1045)
T 1k32_A 488 YLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLES 567 (1045)
T ss_dssp EEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSS
T ss_pred EEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCC
Confidence 999988888887654322000 000 0 00110 001236789999999
Q ss_pred CCEEEE------------E--eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 940 QTRFLL------------V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 940 g~~la~------------~--~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
|+++++ + ....|.+||+.+++.... . ..+.+++|||||++|++++.| .|++||+.+++
T Consensus 568 g~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 568 SILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp EEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred CeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 998875 1 245789999988875432 2 468899999999999998766 89999999887
No 43
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=5e-35 Score=326.45 Aligned_cols=300 Identities=19% Similarity=0.267 Sum_probs=260.1
Q ss_pred ceeeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCCcccc--ceeeeecCCCCCeEEEEEcCCCC
Q 001403 325 TVAQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSML--FKTALVRDPGVSVNRVVWSPDGS 401 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~ 401 (1084)
.+..+|.||++.|++++|+|+ +++||+|+.| ++|+|||+.+.... .....+.+|...|.+++|+|||+
T Consensus 29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D---------~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~ 99 (340)
T 4aow_A 29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRD---------KTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ 99 (340)
T ss_dssp EEEEEECCCSSCEEEEEECTTCTTEEEEEETT---------SCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS
T ss_pred EEEEEECCccCCEEEEEEeCCCCCEEEEEcCC---------CeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC
Confidence 345689999999999999998 6899999988 99999999865432 23345789999999999999999
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCCCcE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV 480 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~~~v 480 (1084)
+|++++.|+.|++|+...+.... ....+...+..+.+++++. .+++++.|+.+++||+...... ....+|...+
T Consensus 100 ~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v 174 (340)
T 4aow_A 100 FALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWV 174 (340)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSCSSCE
T ss_pred EEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccccCcc
Confidence 99999999999999999876444 5667888899999999999 7999999999999998766543 4557899999
Q ss_pred EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 481 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 481 ~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
..++|++.+...++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++. ++.|++||+.+++.+
T Consensus 175 ~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~~~~~ 250 (340)
T 4aow_A 175 SCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNEGKHL 250 (340)
T ss_dssp EEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEEE
T ss_pred cceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEeccCcee
Confidence 9999988877789999999999999999999988899999999999999999999999986 677999999999999
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-------CCCCCcceEEEecCCCEEEEEE
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
..+..+. .+.++.|+|++. +++++.|+.|++||++++..+..+... .+...|.+++|+|+|++|++|+
T Consensus 251 ~~~~~~~----~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs 325 (340)
T 4aow_A 251 YTLDGGD----IINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGY 325 (340)
T ss_dssp EEEECSS----CEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEE
T ss_pred eeecCCc----eEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEe
Confidence 8887654 799999999875 556667999999999999888776532 3445689999999999999999
Q ss_pred CCCeEEEEEcCCCC
Q 001403 634 NENRIKILETPESN 647 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~ 647 (1084)
.||.|+|||+.+|.
T Consensus 326 ~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 326 TDNLVRVWQVTIGT 339 (340)
T ss_dssp TTSCEEEEEEEC--
T ss_pred CCCEEEEEeCCCcC
Confidence 99999999998874
No 44
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-35 Score=323.42 Aligned_cols=306 Identities=15% Similarity=0.178 Sum_probs=230.9
Q ss_pred CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC--eEEEEEcCCCCCCCcceEEEecCCCEEEEEE
Q 001403 556 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+.+.+..+.+|. ..|.+++|+|+ +|++|+.|++|++||+.++ .....+....+...|.+++|+|++++|++++
T Consensus 3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s 77 (330)
T 2hes_X 3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS 77 (330)
T ss_dssp CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence 455677888888 89999999987 9999999999999999875 4555553322455799999999999999999
Q ss_pred CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 634 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
.|+.|++|+........ .
T Consensus 78 ~D~~v~iw~~~~~~~~~-~------------------------------------------------------------- 95 (330)
T 2hes_X 78 FDSTVSIWAKEESADRT-F------------------------------------------------------------- 95 (330)
T ss_dssp TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence 99999999975321000 0
Q ss_pred cceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCC
Q 001403 714 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 793 (1084)
Q Consensus 714 ~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1084)
... + +.. + .+|
T Consensus 96 -----------------------~~~-~--------~~~-----------------------------------~--~~h 106 (330)
T 2hes_X 96 -----------------------EMD-L--------LAI-----------------------------------I--EGH 106 (330)
T ss_dssp -----------------------CCE-E--------EEE-----------------------------------E--C--
T ss_pred -----------------------cce-e--------EEE-----------------------------------E--cCC
Confidence 000 0 000 0 026
Q ss_pred CCCccEEEecCCCCEEEEEe-CCeEEEEEcCC----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 794 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
...|.+++|+|+|++|++++ |++|++||+.. .+.+..+.+|...|.+++|+| ++.+|++|+.|++|++||..++
T Consensus 107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~ 185 (330)
T 2hes_X 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD 185 (330)
T ss_dssp --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence 67778888888888888877 68888888732 356778889999999999999 8999999999999999999876
Q ss_pred --eeeeeecccccCEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCce---eeeeeeecCCC-CccCCCCceEEEEccCC
Q 001403 869 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 --~~~~~l~~h~~~V~~l~~spd--~~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~~~~s~dg 940 (1084)
+++..+.+|.+.|.+++|+|+ +.+|++++.|++|++||+..+.. ....+.....+ |.. .|.+++|++++
T Consensus 186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~---~v~~v~~s~~~ 262 (330)
T 2hes_X 186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR---QVYNVAWGFNG 262 (330)
T ss_dssp EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS---CEEEEEECTTS
T ss_pred CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc---ceEEEEEcCCC
Confidence 678899999999999999998 77999999999999999976421 11122233332 443 79999999877
Q ss_pred CEEEEEeCCeEEEEEcCCcc--eeeEeecCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEEcCC
Q 001403 941 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 941 ~~la~~~d~~i~vwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
.++..+.|+.|++|+..+++ .......+|.. .|.+++|+| ++++|++++.||+|++|++.+
T Consensus 263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 54444789999999998774 34444457876 899999999 789999999999999999875
No 45
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=100.00 E-value=1e-34 Score=323.40 Aligned_cols=320 Identities=13% Similarity=0.145 Sum_probs=266.1
Q ss_pred CCCCCCCCcchhhhcccccCCCccCCCc-cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC
Q 001403 296 NIPDYSPKSSLKKEMFQSFGETSFSDFP-KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA 374 (1084)
Q Consensus 296 s~~~fsP~~s~~~~~f~~~~~~~~~~~p-~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~ 374 (1084)
.++.|+|++..+........- .....+ ........+|.+.|.+++|+|+|++|+++. | +.|+|||+.+
T Consensus 13 ~~~~~s~dg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-d---------g~i~iw~~~~ 81 (337)
T 1gxr_A 13 YSFHVTADGQMQPVPFPPDAL-IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-K---------GCVKVWDISH 81 (337)
T ss_dssp CEEEECSSSCEEECCCCTTSS-SSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-B---------SEEEEEETTS
T ss_pred eEEEECCCCCEEEeecCCCcE-eccccCCccccceeccCCCceEEEEEecCCcEEEEcC-C---------CeEEEEECCC
Confidence 357889999887654432211 222223 223334448999999999999999999987 7 9999999987
Q ss_pred ccccceeeeec--CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEE
Q 001403 375 CSMLFKTALVR--DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVIT 452 (1084)
Q Consensus 375 ~~~~~~~~~~~--~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s 452 (1084)
.........+. +|...|.+++|+|++++|++++.|+.|++||+.+++.. ....+..|...|.+++|+|+++ ++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~l~~ 158 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFS 158 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcc-eeeecccCCCceEEEEECCCCC--EEEE
Confidence 65433332233 79999999999999999999999999999999987632 2336778999999999999999 8999
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 453 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
++.|+.|++||+++++.+..+.+|...|.+++|++ ++.++++++.||.|++||+++.+....+. +...+.+++|+|+
T Consensus 159 ~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~ 235 (337)
T 1gxr_A 159 CCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPT 235 (337)
T ss_dssp EETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTT
T ss_pred EeCCCcEEEEeCCCCceeeeeecccCceEEEEECC--CCCEEEEEecCCcEEEEECCCCceEeeec-CCCceEEEEECCC
Confidence 99999999999999999999999999999999965 66899999999999999999887766654 5568999999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
++++++++. ++.|++||+.+++.. .+..|. ..+.+++|+|+++++++++.||.|++||+.+++.+.....
T Consensus 236 ~~~l~~~~~----~~~i~~~~~~~~~~~-~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~-- 305 (337)
T 1gxr_A 236 GEWLAVGME----SSNVEVLHVNKPDKY-QLHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-- 305 (337)
T ss_dssp SSEEEEEET----TSCEEEEETTSSCEE-EECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC--
T ss_pred CCEEEEEcC----CCcEEEEECCCCCeE-EEcCCc---cceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEecC--
Confidence 999999875 566999999988764 455565 8899999999999999999999999999999988866543
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
...+.+++|+|++++|++++.||.|++|++
T Consensus 306 -~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 306 -SSSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -SSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred -CCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 235899999999999999999999999986
No 46
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.1e-35 Score=342.49 Aligned_cols=346 Identities=12% Similarity=0.115 Sum_probs=282.6
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
.+++++|+|+|++|++++.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++||+.+++.
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~ 131 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ 131 (420)
T ss_dssp CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence 45579999999999999999999999999887655 34455 4455667899999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
...+.+|...|.+++|++ ++.+|++++.||.|++||+.+.+....+..|...|.+++|+|++++|++++. ++.|
T Consensus 132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v 205 (420)
T 3vl1_A 132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI 205 (420)
T ss_dssp EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence 988899999999999965 6689999999999999999999998899999999999999999999999986 6679
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
++||+.+++.+..+..+..+...+.+++|.|.+... ... .....+.+++|+|+++++
T Consensus 206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~l 262 (420)
T 3vl1_A 206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKYV 262 (420)
T ss_dssp EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEEE
T ss_pred EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCEE
Confidence 999999999999998876666889999887764322 011 112357889999999999
Q ss_pred EEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 630 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
++++.||.|++||+.+++....+.
T Consensus 263 ~~~~~dg~i~i~d~~~~~~~~~~~-------------------------------------------------------- 286 (420)
T 3vl1_A 263 IAGHVSGVITVHNVFSKEQTIQLP-------------------------------------------------------- 286 (420)
T ss_dssp EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence 999999999999987653221110
Q ss_pred ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCc
Q 001403 710 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789 (1084)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1084)
T Consensus 287 -------------------------------------------------------------------------------- 286 (420)
T 3vl1_A 287 -------------------------------------------------------------------------------- 286 (420)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCccEEEecCCCC-EEEEEe-CCeEEEEEcCCcee-EEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEc
Q 001403 790 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 865 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~-~l~~~s-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~ 865 (1084)
..|...+.+++|+|++. +|++++ ||.|++||+.+++. +..+.. |...+.++.+. ++++|++++.||.|++|++
T Consensus 287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~ 363 (420)
T 3vl1_A 287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII 363 (420)
T ss_dssp -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence 01556677788888877 777776 68888888887643 566665 56677787554 5789999999999999998
Q ss_pred CCc---------eeeeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001403 866 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 866 ~~~---------~~~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~ 909 (1084)
.+. .....+.+|.+.|.+++|+|+++ .|++++.+|.+.+|+++.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 873 22234567889999999999999 788888999999999875
No 47
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-35 Score=341.71 Aligned_cols=383 Identities=12% Similarity=0.133 Sum_probs=284.6
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCEEEEEEccC
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG 419 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~v~iwd~~~ 419 (1084)
.|+|+++.++++. .|+... .. ...+..+|...|++++|+| ++++||+|+.||+|+|||+.+
T Consensus 34 ~f~~~~~~~~~~~---------------~w~~~g-~~--~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~ 95 (437)
T 3gre_A 34 EFGPIQEIVRSPN---------------MGNLRG-KL--IATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKE 95 (437)
T ss_dssp GGCCCCCCCCCCC---------------GGGCCC-CE--EEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHH
T ss_pred hcCCccccccccc---------------cccccc-eE--EeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcc
Confidence 4789999888852 133221 11 1122378999999999999 999999999999999999987
Q ss_pred ---CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC---CCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 420 ---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 420 ---~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~---~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
+...+....+ +|.+.|.+++|+|+++ +|++++.|++|++||++ +++.+..+.+| .+..+.+++.+
T Consensus 96 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~~~~~---- 166 (437)
T 3gre_A 96 IIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINLKNFG---- 166 (437)
T ss_dssp HHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEGGGGS----
T ss_pred cccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEccCcc----
Confidence 5433333233 5999999999999999 89999999999999994 77777777766 67777775531
Q ss_pred EEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE--EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccc
Q 001403 494 IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQ 569 (1084)
Q Consensus 494 l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~ 569 (1084)
+...+.++. +++++.++++++. ++.|++||+++++.+..+.+ |.
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~h~-- 214 (437)
T 3gre_A 167 --------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQIIENSPRH-- 214 (437)
T ss_dssp --------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEEECCGGG--
T ss_pred --------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEEccCCCC--
Confidence 112333444 6789999999986 67799999999999999988 55
Q ss_pred cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe----cCCCEEEEEECCCeEEEEEcCC
Q 001403 570 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
..|.+++|+|++++|++|+.||.|++||+++++.+..+..... ..|.+++|+ |++.++++++.||.|++||+.+
T Consensus 215 -~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 292 (437)
T 3gre_A 215 -GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVK 292 (437)
T ss_dssp -CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTT
T ss_pred -CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCC
Confidence 8999999999999999999999999999999999998863222 358899665 4688999999999999999999
Q ss_pred CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccc
Q 001403 646 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK 725 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~ 725 (1084)
++.+..+.++...+..+.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~------------------------------------------------------------ 312 (437)
T 3gre_A 293 GHCQYAFINSDEQPSMEHFL------------------------------------------------------------ 312 (437)
T ss_dssp TEEEEEEESSSSCCCGGGGS------------------------------------------------------------
T ss_pred CcEEEEEEcCCCCCccceec------------------------------------------------------------
Confidence 88887777665544333332
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
|+++.+ .+ ..+.+..|...|.+++|+ +
T Consensus 313 ----------~~~~~l----~~--------------------------------------~~~~~~~~~~~v~~l~~~-~ 339 (437)
T 3gre_A 313 ----------PIEKGL----EE--------------------------------------LNFCGIRSLNALSTISVS-N 339 (437)
T ss_dssp ----------CBCSSG----GG--------------------------------------CCCCCCCSGGGGCCEEEE-T
T ss_pred ----------cccccc----cc--------------------------------------ceecccccCCceEEEEEC-C
Confidence 222111 00 000111277889999999 7
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV 881 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V 881 (1084)
+++|++++ |+.|++||+.+++....+.+|. ..+....+++ +..+++.. |+...+........|.+.|
T Consensus 340 ~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~I 410 (437)
T 3gre_A 340 DKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDII 410 (437)
T ss_dssp TEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCCE
T ss_pred ceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccce
Confidence 88899988 8999999999999999888764 3456667777 55555444 3334445556667799999
Q ss_pred EEEEEcCC--CCEEEEEeCCCcEEEEe
Q 001403 882 TGLVFSDA--LNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 882 ~~l~~spd--~~~l~s~s~dg~I~iwd 906 (1084)
++++|+++ +.+|++|+.||.|+||+
T Consensus 411 ~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 411 NSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeEeeeccCCceEEEEEcCCceEEEeC
Confidence 99999998 78999999999999995
No 48
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=100.00 E-value=5e-35 Score=332.53 Aligned_cols=290 Identities=17% Similarity=0.229 Sum_probs=248.2
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeeccc------------------ccEeEEEeecCCCc
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ 447 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~------------------~~V~~l~~s~d~~~ 447 (1084)
+|...|.+++|||||++||+|+ ++.++||++.+++.+. .+..|. ..|.+++|+|||+
T Consensus 62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~- 136 (393)
T 1erj_A 62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK- 136 (393)
T ss_dssp ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence 4999999999999999999987 6789999999987654 333332 2499999999999
Q ss_pred EEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 448 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 448 l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
+|++|+.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|++++.|++|++||+.+++....+. +...+.++
T Consensus 137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~ 212 (393)
T 1erj_A 137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV 212 (393)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence 899999999999999999999999999999999999965 66899999999999999999887766665 34578999
Q ss_pred EEcC-CCCEEEEEeeCCCCCeeEEEecCCCceEeeee-------eccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 528 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTY-------QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 528 ~~s~-d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~-------~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+|+| +++++++++. ++.|++||+.+++.+..+ .+|. ..|.+++|+|++++|++++.||.|++||+
T Consensus 213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~d~~v~~wd~ 285 (393)
T 1erj_A 213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHK---DSVYSVVFTRDGQSVVSGSLDRSVKLWNL 285 (393)
T ss_dssp EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCS---SCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCC---CCEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9999 8999999986 667999999999888776 3444 88999999999999999999999999999
Q ss_pred CCCe------------EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCC
Q 001403 600 NKVQ------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 600 ~~~~------------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
.+.. +...+..|. ..|.+++|+|++.+|++++.|+.|++||..+++.+..+.+|...|.++++++.
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~ 363 (393)
T 1erj_A 286 QNANNKSDSKTPNSGTCEVTYIGHK--DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 363 (393)
T ss_dssp ---------------CEEEEEECCS--SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSS
T ss_pred CCCCCcccccCCCCCcceEEEeccc--CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCC
Confidence 7643 344455443 46899999999999999999999999999999999999999999999999864
Q ss_pred CceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 668 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
... .|++.++++++.|+++++|++..
T Consensus 364 ~~~----------------~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 364 SSL----------------GPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp CTT----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred cCc----------------CCCCCEEEEECCCCcEEECcccc
Confidence 322 47889999999999999999863
No 49
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-36 Score=348.31 Aligned_cols=337 Identities=15% Similarity=0.238 Sum_probs=265.9
Q ss_pred CceEEEEEcCCCC-EEEEE----------ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE
Q 001403 571 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639 (1084)
Q Consensus 571 ~~v~~~~~s~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 639 (1084)
..+.+++|+|+++ +++++ +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus 13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~ 92 (416)
T 2pm9_A 13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE 92 (416)
T ss_dssp EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence 3578899999987 88888 899999999999876322221112344699999999999999999999999
Q ss_pred EEEcCCC----CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccc
Q 001403 640 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 640 iwd~~~~----~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
+|++.+. +.+..+.
T Consensus 93 vw~~~~~~~~~~~~~~~~-------------------------------------------------------------- 110 (416)
T 2pm9_A 93 LYSTNEANNAINSMARFS-------------------------------------------------------------- 110 (416)
T ss_dssp EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred Eeecccccccccchhhcc--------------------------------------------------------------
Confidence 9998862 2222222
Q ss_pred eeeccCCccccceEEEEEEecC-CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCC
Q 001403 716 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ 794 (1084)
Q Consensus 716 ~~~~~~~~~~~~~i~~l~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1084)
.|...|.+++|+|+ +..+++++.||.|++|++......... + ..... .....|.
T Consensus 111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~----------~------~~~~~-~~~~~~~ 165 (416)
T 2pm9_A 111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSN----------Y------TPLTP-GQSMSSV 165 (416)
T ss_dssp --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTT----------C------CCBCC-CCSCCSS
T ss_pred --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCcccccc----------c------ccccc-ccccCCC
Confidence 25567778888887 788888888999998887654310000 0 00000 0011488
Q ss_pred CCccEEEecCC-CCEEEEEe-CCeEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCCcEEEEEeCCC---eEEEE
Q 001403 795 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY 863 (1084)
Q Consensus 795 ~~v~~l~~s~d-g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~~dg---~i~iw 863 (1084)
..|.+++|+|+ +.++++++ ++.|++||+.+++.+..+..+ ...|.+++|+|++..++++++.|+ .|++|
T Consensus 166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~ 245 (416)
T 2pm9_A 166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW 245 (416)
T ss_dssp CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence 89999999999 78888887 799999999999999998876 788999999994447999999999 99999
Q ss_pred EcCCc-eeeeeec-ccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 864 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 864 d~~~~-~~~~~l~-~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
|+.++ +.+..+. +|...|++++|+| ++++|++++.||+|++||+.+++. +....+|.. .|.+++|+|++
T Consensus 246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~-----~~~~~~~~~---~v~~~~~s~~~ 317 (416)
T 2pm9_A 246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQ-----LSQFPARGN---WCFKTKFAPEA 317 (416)
T ss_dssp ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCE-----EEEEECSSS---CCCCEEECTTC
T ss_pred eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCcc-----ceeecCCCC---ceEEEEECCCC
Confidence 99986 6778888 9999999999999 999999999999999999998653 333344443 79999999999
Q ss_pred -CEEEE-EeCCeEEEEEcCCcceeeEe----------------------------------ecCCCCCEEEEEEccCCCE
Q 001403 941 -TRFLL-VHETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM 984 (1084)
Q Consensus 941 -~~la~-~~d~~i~vwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~ 984 (1084)
.+|++ +.|+.|++||+.++...... ...|..++.+++|+|||++
T Consensus 318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~ 397 (416)
T 2pm9_A 318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL 397 (416)
T ss_dssp TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence 88888 58999999999877643321 0115678889999999999
Q ss_pred EEEEeCCCcEEEEEcCCC
Q 001403 985 VFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 985 l~t~~~dg~i~vwd~~~~ 1002 (1084)
|++++.||.|+||++.+.
T Consensus 398 la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 398 VQITPDGKGVSITNPKIS 415 (416)
T ss_dssp ECBCTTSSCBCCBCCCCC
T ss_pred EEEeCCCCeEEEEEeccC
Confidence 999999999999999875
No 50
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=100.00 E-value=1.8e-35 Score=340.88 Aligned_cols=349 Identities=11% Similarity=0.099 Sum_probs=282.4
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
.+.+++|+|||++||++..| +.+++||+.+...... +.+| ..+....|+|++++||+++.|+.|++|
T Consensus 58 ~~~~~~~s~~g~~l~~~~~d---------~~v~i~d~~~~~~~~~---~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iw 124 (420)
T 3vl1_A 58 AGKGNTFEKVGSHLYKARLD---------GHDFLFNTIIRDGSKM---LKRA-DYTAVDTAKLQMRRFILGTTEGDIKVL 124 (420)
T ss_dssp CCTTCEEEEEETTEEEEEET---------TEEEEEECCSEETTTT---SCSC-CEEEEEEECSSSCEEEEEETTSCEEEE
T ss_pred cccceeeeecCCeEEEEEcC---------CcEEEEEecccceeeE---EecC-CceEEEEEecCCCEEEEEECCCCEEEE
Confidence 45689999999999999888 9999999987665433 3334 455566889999999999999999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
|+.+++... .+.+|.+.|++++|+|+++ +|++++.|++|++||+.+++.+..+.+|...|.+++|++ ++.+|+
T Consensus 125 d~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~ 197 (420)
T 3vl1_A 125 DSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIID--RGRNVL 197 (420)
T ss_dssp CTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEET--TTTEEE
T ss_pred eCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcC--CCCEEE
Confidence 999886544 5679999999999999999 899999999999999999999999999999999999965 678999
Q ss_pred EEecCCeEEEEECCCCCceEeecC---CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
+++.||.|++||+.+++....+.. +...+.++++.+++... ....+. ..
T Consensus 198 s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~---~~ 249 (420)
T 3vl1_A 198 SASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LHEIST---SK 249 (420)
T ss_dssp EEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CGGGCC---CC
T ss_pred EEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------eeeccc---Cc
Confidence 999999999999998887777664 44567777776543221 011122 56
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCCCe-ee
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPESNS-VD 650 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~~~-~~ 650 (1084)
+.+++|+|+++++++++.||.|++||+.+++....+... +...+.+++|+|++. ++++++.||.|++||+.+++. +.
T Consensus 250 v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 250 KNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp CCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred ccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 888899999999999999999999999999888777542 234699999999999 999999999999999998744 56
Q ss_pred eccc-cccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec---cCCcccc
Q 001403 651 AAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL---LPSKVKA 726 (1084)
Q Consensus 651 ~~~~-~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~---~~~~~~~ 726 (1084)
.+.. +...+.++.+ ++++++++++.|+.+++|++............ .....+.
T Consensus 329 ~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 385 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSND 385 (420)
T ss_dssp EEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSS
T ss_pred hhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceeccCccEEccCC
Confidence 6665 5555665544 35778999999999999998753322111100 0113477
Q ss_pred ceEEEEEEecCCC---eEEEeecCCceEEeecc
Q 001403 727 NKISRLTYNNGGQ---AIFALASNGVHLMWRWP 756 (1084)
Q Consensus 727 ~~i~~l~~s~~g~---~l~~~~~dg~i~vw~~~ 756 (1084)
..|.+++|+|++. .+++++.+|.+.+|++.
T Consensus 386 ~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 386 DAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp CCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred cceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 8899999999999 89999999999999864
No 51
>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R
Probab=100.00 E-value=1.9e-34 Score=321.32 Aligned_cols=290 Identities=20% Similarity=0.225 Sum_probs=240.8
Q ss_pred eeecCCCCCeEEEEE-----cC-CCCEEEEEeCCCEEEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEE
Q 001403 382 ALVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVI 451 (1084)
Q Consensus 382 ~~~~~h~~~V~~v~f-----sp-dg~~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~ 451 (1084)
..+.+|...|++++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|.+++|+|++. +++
T Consensus 15 ~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~ 92 (343)
T 2xzm_R 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAI 92 (343)
T ss_dssp EEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEE
T ss_pred eeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEE
Confidence 347899999999999 77 9999999999999999999865421 23346789999999999999999 899
Q ss_pred EEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec---CCCCeEEEEE
Q 001403 452 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMA 528 (1084)
Q Consensus 452 s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~ 528 (1084)
+|+.|++|++||+++++.+..+.+|...|.+++|+| ++.+|++++.|+.|++||+.. ....... .+...+.+++
T Consensus 93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~ 169 (343)
T 2xzm_R 93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVR 169 (343)
T ss_dssp EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEE
T ss_pred EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeee
Confidence 999999999999999999999999999999999965 678999999999999999973 3333322 5667899999
Q ss_pred EcCCC----------CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 529 YSANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 529 ~s~d~----------~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
|+|++ .++++++. ++.|++|| .+++....+.+|. ..|.+++|+|++++|++|+.||.|++||
T Consensus 170 ~~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd 241 (343)
T 2xzm_R 170 YSPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWD 241 (343)
T ss_dssp ECCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEE
T ss_pred eccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEE
Confidence 99987 78888876 67799999 4567777888887 8999999999999999999999999999
Q ss_pred CC-CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeee--ecc-----------ccccceeEEEE
Q 001403 599 MN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSV 664 (1084)
Q Consensus 599 ~~-~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~-----------~~~~~i~~~~~ 664 (1084)
+. .......+... ..|.+++|+|++.+++++ .|+.+++|++.+++... .+. +|...+.+++|
T Consensus 242 ~~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 317 (343)
T 2xzm_R 242 ILNLTYPQREFDAG---STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAW 317 (343)
T ss_dssp SSCCSSCSEEEECS---SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEE
T ss_pred CCCCcccceeecCC---CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEE
Confidence 94 44444444322 248999999999888765 56789999998765433 222 56667777777
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceee
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~ 710 (1084)
+ |+++++++++.||+|++|++..+
T Consensus 318 s----------------------p~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 318 N----------------------ALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp C----------------------SSSCCEEEEETTSEEEEEEEEEE
T ss_pred C----------------------CCCCeEEEecCCceEEEEEEEcc
Confidence 6 67889999999999999998743
No 52
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.5e-36 Score=347.17 Aligned_cols=272 Identities=7% Similarity=0.021 Sum_probs=209.1
Q ss_pred eeeecccCCCCceEEEEcCCC---------ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ---------HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW 396 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg---------~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f 396 (1084)
+..++. +.+.|.+|+|+|++ ++||++..+ +. . ...
T Consensus 126 ~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~---------~~----------------------~----~~~ 169 (524)
T 2j04_B 126 RGFIYN-VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQ---------YM----------------------D----EPL 169 (524)
T ss_dssp CEEEEE-CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC-----------------------------------------
T ss_pred ceEEEE-CCCceeEEEecccCCCCccCcCCeEEEEEEec---------cc----------------------C----Ccc
Confidence 333444 56799999999998 899997544 10 0 124
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCccccc-eeeeecccccEeEEEeecC------CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAP------CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d------~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
+|+++.||+++.|++|+|||+.+++.... ...+.+|.+.|.+++|+|+ +. +|++++.|++|++||+.++..
T Consensus 170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~--~LAs~s~DgtvrlWd~~~~~~ 247 (524)
T 2j04_B 170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVG--CLSFVSQEGTINFLEIIDNAT 247 (524)
T ss_dssp ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSC--EEEEEETTSCEEEEECCCCSS
T ss_pred chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCc--eEEEEecCCeEEEEEcCCCcc
Confidence 79999999999999999999998764321 1246678899999999997 45 899999999999999987642
Q ss_pred -----------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCCeEEEE--EEcCCC-C
Q 001403 470 -----------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRM--AYSANG-R 534 (1084)
Q Consensus 470 -----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~--~~s~d~-~ 534 (1084)
..++.+|...|.+++|++ + ..|++|+.||+|++||+++.. ....+..|...|.++ +|+|+| .
T Consensus 248 ~~~~~~~~~~p~~~l~~h~~~v~sv~~s~--~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~ 324 (524)
T 2j04_B 248 DVHVFKMCEKPSLTLSLADSLITTFDFLS--P-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDT 324 (524)
T ss_dssp SSSEEECCCSCSEEECCTTTCEEEEEESS--S-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCC
T ss_pred ccccceeecCceEEEEcCCCCEEEEEecC--C-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCe
Confidence 247789999999999975 3 489999999999999998764 345678899999999 678888 8
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 614 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 614 (1084)
+|++++. +++|++||+++++....+.+|. ....|.+++|+|+++.+++++.|++|++||++++.++..+..|..
T Consensus 325 ~laS~S~----D~tvklWD~~~~~~~~~~~~~~-~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~- 398 (524)
T 2j04_B 325 VVSTVAV----DGYFYIFNPKDIATTKTTVSRF-RGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRET- 398 (524)
T ss_dssp EEEEEET----TSEEEEECGGGHHHHCEEEEEC-SCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSS-
T ss_pred EEEEecc----CCeEEEEECCCCCccccccccc-ccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCC-
Confidence 9999986 7789999999988877777665 112478899999999999999999999999999988777776544
Q ss_pred CCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 615 PENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 615 ~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.|.+++|+|+|++|++|+.|++|++|+...
T Consensus 399 -~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 399 -TITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp -CEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred -ceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 699999999999999999999999999753
No 53
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=100.00 E-value=7.1e-34 Score=364.52 Aligned_cols=502 Identities=11% Similarity=0.052 Sum_probs=364.5
Q ss_pred CccCCCccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCe-----
Q 001403 317 TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV----- 391 (1084)
Q Consensus 317 ~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V----- 391 (1084)
.++.++.....+.|.+|...|.+++|||||++||+++.+...+ ....|.+||+.++.. ..+.+|...+
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~la~~s~~~~~~---~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~ 107 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSL---NTADLYFYNGENGEI----KRITYFSGKSTGRRM 107 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTC---CEEEEEEEETTTTEE----EECCCCCEEEETTEE
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCEEEEEEeeccCC---CCCeEEEEECCCCCe----EEcccCCCccccccc
Confidence 3445555666788899999999999999999999976541111 126899999987652 2366788888
Q ss_pred --EEEEEcCCCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC--------
Q 001403 392 --NRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------- 455 (1084)
Q Consensus 392 --~~v~fspdg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-------- 455 (1084)
..++|||||+++++++.+ ..|.+|++.+++.. .+..+ ....++|+| | ++++++.
T Consensus 108 ~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~----~l~~~--~~~~~~~sp-G---~l~~~~~~~~~~~~~ 177 (1045)
T 1k32_A 108 FTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV----PLNLG--PATHILFAD-G---RRVIGRNTFELPHWK 177 (1045)
T ss_dssp CSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE----ECCSC--SCSEEEEET-T---EEEEEESCSCCTTST
T ss_pred ccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeE----EecCC--CcceeeeCC-C---EEEEeccCCCccccc
Confidence 999999999977777644 35888888877532 23233 245678999 6 4666542
Q ss_pred ----CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEc
Q 001403 456 ----DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 456 ----d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s 530 (1084)
+....+|....+.....+.+|...+.++.|++ + .++++++.+|.+++|.++.. .....+..+. .+...+|+
T Consensus 178 ~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~S 253 (1045)
T 1k32_A 178 GYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLN 253 (1045)
T ss_dssp TCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEE
T ss_pred cccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEc
Confidence 34566775444455566789999999999954 4 57778888999999987642 3334444433 35667999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--------cccCceEEEEEc-CCCCEEEEEECCCcEEEEECCC
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--------~~~~~v~~~~~s-~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
|||+.++++. ++.|++||+...+.. .+.++. .+...+..++|+ |+|+++++++ ++.|++|+..+
T Consensus 254 pDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~ 326 (1045)
T 1k32_A 254 TDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG 326 (1045)
T ss_dssp ESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred CCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence 9999998874 556999999554443 444321 012368899999 9999999988 78999999988
Q ss_pred CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE-EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 602 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK-ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 602 ~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+.... +..+.. ..+..++|+ ||+.+++++.++.+. +|+..+++.....
T Consensus 327 ~~~~~-~~~~~~-~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~---------------------------- 375 (1045)
T 1k32_A 327 TYVLK-VPEPLR-IRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE---------------------------- 375 (1045)
T ss_dssp SBEEE-CSCCSC-EEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC----------------------------
T ss_pred CceEE-ccCCCc-ceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec----------------------------
Confidence 87554 332211 147889999 999999999888888 8887755321110
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCcc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL 760 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~ 760 (1084)
.+...+..++|+|||+.|++++.++.+++|++..+
T Consensus 376 -------------------------------------------~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg-- 410 (1045)
T 1k32_A 376 -------------------------------------------ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG-- 410 (1045)
T ss_dssp -------------------------------------------CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--
T ss_pred -------------------------------------------CCccceeeeEECCCCCEEEEECCCCeEEEEECCCC--
Confidence 13456778999999999999999998888876543
Q ss_pred CcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CC----------eEEEEEcCCceeEE
Q 001403 761 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GG----------VISLYIVMTFKTIL 829 (1084)
Q Consensus 761 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg----------~i~vwd~~~~~~~~ 829 (1084)
....... +|...+.+++|||||++|++++ ++ .|++||+.+++ ..
T Consensus 411 --------------------~~~~~~~----~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~ 465 (1045)
T 1k32_A 411 --------------------KPTVIER----SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IF 465 (1045)
T ss_dssp --------------------CEEEEEE----CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EE
T ss_pred --------------------ceEEecc----CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EE
Confidence 2111111 2677789999999999998876 33 89999999887 67
Q ss_pred EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce----------------------------------------
Q 001403 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---------------------------------------- 869 (1084)
Q Consensus 830 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~---------------------------------------- 869 (1084)
.+..|...+.+++|+| ||++|++++.++...+|+.....
T Consensus 466 ~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g 544 (1045)
T 1k32_A 466 AATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLND 544 (1045)
T ss_dssp ECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTT
T ss_pred EeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccccCcCccccccccccccC
Confidence 7888888899999999 89999999987776666532211
Q ss_pred ---eeeeecccccCEEEEEEcCCCCEEEE-------------EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceE
Q 001403 870 ---VISKLEGHSKRVTGLVFSDALNILVS-------------SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 870 ---~~~~l~~h~~~V~~l~~spd~~~l~s-------------~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
.+..+..|.+.+..++|+|||+++++ .+.+..|.+||+.+++... +. . .+..
T Consensus 545 ~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~---l~-----~----~v~~ 612 (1045)
T 1k32_A 545 MYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTE---VK-----N----NLTD 612 (1045)
T ss_dssp GGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEE---EE-----E----EEEE
T ss_pred HhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEE---ee-----c----Ccce
Confidence 12334457788999999999988885 1235578889998876432 11 1 4778
Q ss_pred EEEccCCCEEEEEeCCeEEEEEcCCcc
Q 001403 934 IQFHKDQTRFLLVHETHLAIYEAEELT 960 (1084)
Q Consensus 934 ~~~s~dg~~la~~~d~~i~vwd~~~~~ 960 (1084)
++|||||++|+++.++.|++||+.+++
T Consensus 613 ~~~S~DG~~l~~~~~~~i~~~d~~~~~ 639 (1045)
T 1k32_A 613 LRLSADRKTVMVRKDDGKIYTFPLEKP 639 (1045)
T ss_dssp EEECTTSCEEEEEETTSCEEEEESSCT
T ss_pred EEECCCCCEEEEEcCCcEEEEeCccCc
Confidence 999999999999888899999998877
No 54
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=2.9e-34 Score=352.42 Aligned_cols=296 Identities=18% Similarity=0.254 Sum_probs=253.5
Q ss_pred eeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccc--eeeeecCCCCCeEEEEEcCCCCE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~--~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
....|.+|++.|++++|+|++ ++||+++.| ++|+|||+.+..... ....+.+|...|.+++|+|+|++
T Consensus 374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D---------~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~ 444 (694)
T 3dm0_A 374 LKGTMRAHTDMVTAIATPIDNADIIVSASRD---------KSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQF 444 (694)
T ss_dssp EEEEEECCSSCEEEEECCTTCCSEEEEEETT---------SEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSE
T ss_pred hhhhcccCCceeEEEEecCCCCCEEEEEeCC---------CcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCE
Confidence 445789999999999999975 799999988 999999997654322 22347899999999999999999
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---ccCCCc
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---EGHGAP 479 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~---~~h~~~ 479 (1084)
|++|+.|++|+|||+.++...+ .+.+|...|.+++|+|+++ .|++|+.|++|++||.......... .+|...
T Consensus 445 l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~ 519 (694)
T 3dm0_A 445 ALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDW 519 (694)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSC
T ss_pred EEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCc
Confidence 9999999999999999986655 6789999999999999999 7999999999999997655433222 478999
Q ss_pred EEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE
Q 001403 480 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 559 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~ 559 (1084)
|.+++|+++.....+++++.||+|++||+...+....+..|...|.+++|+|++++|++++. ++.|++||+.+++.
T Consensus 520 v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 520 VSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGKK 595 (694)
T ss_dssp EEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTEE
T ss_pred EEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCce
Confidence 99999987655578999999999999999999888899999999999999999999999986 67799999999998
Q ss_pred eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC-----------------CCCcceEEE
Q 001403 560 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPENPRICF 622 (1084)
Q Consensus 560 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~ 622 (1084)
+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|
T Consensus 596 ~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 670 (694)
T 3dm0_A 596 LYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNW 670 (694)
T ss_dssp EECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEE
T ss_pred EEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEE
Confidence 8777654 4799999999998777765 56699999999998887754311 112578999
Q ss_pred ecCCCEEEEEECCCeEEEEEcC
Q 001403 623 NKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+|+|++|++|+.||.|++|++.
T Consensus 671 spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 671 SADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp CTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCCCEEEEEcCCCeEEEEecc
Confidence 9999999999999999999975
No 55
>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.3e-36 Score=347.78 Aligned_cols=350 Identities=10% Similarity=0.053 Sum_probs=239.1
Q ss_pred CCCCeEEEEEcCCC---------CEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC
Q 001403 387 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 457 (1084)
Q Consensus 387 h~~~V~~v~fspdg---------~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~ 457 (1084)
+.+.|.+|+|+|++ ++||+++.++.. -..+|+++ ++++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 46799999999987 799999866420 01378888 799999999
Q ss_pred cEEEEECCCCcee----eEeccCCCcEEEEeeccc----CCCcEEEEEecCCeEEEEECCCCCc-----------eEeec
Q 001403 458 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD 518 (1084)
Q Consensus 458 ~i~vwd~~~g~~~----~~~~~h~~~v~~~~~~~~----~~~~~l~s~s~dg~i~iwd~~~~~~-----------~~~~~ 518 (1084)
+|+|||+.+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 9999999887653 456778899999999886 3467999999999999999986542 23567
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce-EeeeeeccccccCceEEE--EEcCCC-CEEEEEECCCcE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI 594 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~~~~~~~~~~~v~~~--~~s~~~-~~l~~~~~dg~i 594 (1084)
.+...|.+++|++++ .|++++. ++.|++||++++. ....+.+|. ..|.++ +|+|++ .+|++++.|++|
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv 335 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF 335 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence 788899999999865 7888875 7789999999764 445677887 899999 578887 899999999999
Q ss_pred EEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeee
Q 001403 595 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG 674 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~ 674 (1084)
++||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++.++..+.+
T Consensus 336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g-------------------- 395 (524)
T 2j04_B 336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS-------------------- 395 (524)
T ss_dssp EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence 999999887766655443322478999999999999999999999999887644333221
Q ss_pred ccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEee
Q 001403 675 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 754 (1084)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 754 (1084)
|.+.|.+++|+|+|+.|++++.||+|++|+
T Consensus 396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd 425 (524)
T 2j04_B 396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN 425 (524)
T ss_dssp --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence 445666677777777777777777777665
Q ss_pred ccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC
Q 001403 755 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.... + +. .+... .. ..+
T Consensus 426 ~~~~------------------------~----~~--~~~~~--------------------------------~~-~~~ 442 (524)
T 2j04_B 426 AARR------------------------L----LH--GIKNS--------------------------------SA-TQK 442 (524)
T ss_dssp SCSS------------------------T----TT--CC---------------------------------------CC
T ss_pred chHh------------------------h----cc--ccccC--------------------------------cc-cee
Confidence 3210 0 00 00000 00 001
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC-CceeeeeecccccCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~-~~~~~~~l~~h~~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~ 909 (1084)
...+.+++|+| ++..+. ... .+.+|+.. ++.++..+.+|...|.+++|+|++. ++|+|+.||+|+||++..
T Consensus 443 ~~~v~~v~~sp-~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 443 SLRLWKWDYSI-KDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CCEEEECBCCS-SSCEEE-ECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eeEEEEeccCC-CCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 22456788999 676542 222 23444433 5777888999999999999999964 999999999999999986
No 56
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=2.2e-33 Score=325.64 Aligned_cols=328 Identities=16% Similarity=0.219 Sum_probs=281.0
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
..+.+.+|.+.|.. +++++|++||+|+.| ++|+|||+.++..... +.+|...|.+++|+ +++|++
T Consensus 110 ~~~~l~~h~~~v~~-~~~~~g~~l~sg~~d---------g~i~vwd~~~~~~~~~---~~~h~~~v~~~~~~--~~~l~s 174 (445)
T 2ovr_B 110 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDD---------NTLKVWSAVTGKCLRT---LVGHTGGVWSSQMR--DNIIIS 174 (445)
T ss_dssp CCEEEECSTTSCEE-EEEEETTEEEEEETT---------SCEEEEETTTCCEEEE---CCCCSSCEEEEEEE--TTEEEE
T ss_pred eeEEecccCCCcEE-EEEEcCCEEEEEECC---------CcEEEEECCCCcEEEE---EcCCCCCEEEEEec--CCEEEE
Confidence 34678999988754 477789999999888 9999999988765433 67899999999998 679999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEee
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 485 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~ 485 (1084)
|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++||+.+++.+..+.+|...|.++++
T Consensus 175 ~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~ 247 (445)
T 2ovr_B 175 GSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 247 (445)
T ss_dssp EETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE
T ss_pred EeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE
Confidence 9999999999999987655 678999999999996 44 7999999999999999999999999999999999998
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
++.++++++.||.|++||+++.+....+..+...+.+++| ++.++++++. ++.|++||+.+++.+..+.+
T Consensus 248 ----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~~~~~~~ 317 (445)
T 2ovr_B 248 ----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNCIHTLTG 317 (445)
T ss_dssp ----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCEEEEECC
T ss_pred ----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCEEEEEcC
Confidence 5578999999999999999998888889999999999999 8899999986 66799999999999999988
Q ss_pred cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-CCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 566 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 566 ~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
|. ..+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ ++++++++.||.|++||+.
T Consensus 318 ~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~ 390 (445)
T 2ovr_B 318 HQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK 390 (445)
T ss_dssp CC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred Cc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence 87 77887777 46799999999999999999999999987632 34468888885 6899999999999999999
Q ss_pred CCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCcc
Q 001403 645 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 724 (1084)
Q Consensus 645 ~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~ 724 (1084)
+++.+..+... ....
T Consensus 391 ~~~~~~~~~~~-----------------------------------------------------------------~~~~ 405 (445)
T 2ovr_B 391 TGEFIRNLVTL-----------------------------------------------------------------ESGG 405 (445)
T ss_dssp TCCEEEEEEEC-----------------------------------------------------------------TTGG
T ss_pred CCceeeeeecc-----------------------------------------------------------------ccCC
Confidence 88766544210 0012
Q ss_pred ccceEEEEEEecCCCeEEEeecCCc----eEEeeccC
Q 001403 725 KANKISRLTYNNGGQAIFALASNGV----HLMWRWPR 757 (1084)
Q Consensus 725 ~~~~i~~l~~s~~g~~l~~~~~dg~----i~vw~~~~ 757 (1084)
+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 5678899999999999999999987 88888754
No 57
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=100.00 E-value=3.5e-33 Score=323.94 Aligned_cols=319 Identities=18% Similarity=0.280 Sum_probs=271.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+.+|...|.. +++++|++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+ +. ++++|+.|++|++||
T Consensus 114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN 185 (445)
T ss_dssp EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence 6789887543 355679999999999999999999987655 678999999999998 44 799999999999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+.+++.+..+.+|...|.++.++ +..+++++.||.|++||+.+++....+..+...+.++++ +++++++++.
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-- 257 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY-- 257 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence 99999999999999999999983 358999999999999999999998899999999999998 7888999876
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|++||+.+++.+..+.+|. ..+.++.| ++.++++++.||.|++||+.+++.+..+..+.. .+.++.+
T Consensus 258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~- 327 (445)
T 2ovr_B 258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL- 327 (445)
T ss_dssp --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence 6679999999999999998887 88999999 788999999999999999999999998876544 4555555
Q ss_pred cCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccc
Q 001403 624 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE 703 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~ 703 (1084)
+++++++++.||.|++||+.+++.+..+..+
T Consensus 328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 358 (445)
T 2ovr_B 328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------ 358 (445)
T ss_dssp -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence 5779999999999999998866443322110
Q ss_pred cccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcc
Q 001403 704 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 783 (1084)
Q Consensus 704 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 783 (1084)
T Consensus 359 -------------------------------------------------------------------------------- 358 (445)
T 2ovr_B 359 -------------------------------------------------------------------------------- 358 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 784 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 784 ~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
..|...|.+++++ +.++++++ ||.|++||+.+++.+..+ .++.+.|.+++|+| ++.++|+|+.|
T Consensus 359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d 428 (445)
T 2ovr_B 359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN 428 (445)
T ss_dssp -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence 0155567777774 56788777 788999999999888887 46778999999999 89999999999
Q ss_pred Ce----EEEEEcCC
Q 001403 858 ST----ILIYNARS 867 (1084)
Q Consensus 858 g~----i~iwd~~~ 867 (1084)
|+ |.+||+..
T Consensus 429 g~~~~~l~v~df~~ 442 (445)
T 2ovr_B 429 GTEETKLLVLDFDV 442 (445)
T ss_dssp SSSCCEEEEEECCC
T ss_pred CCCccEEEEEECCC
Confidence 97 99999874
No 58
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=3.7e-33 Score=325.99 Aligned_cols=320 Identities=18% Similarity=0.261 Sum_probs=271.4
Q ss_pred eecCCCCCe-EEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 383 LVRDPGVSV-NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 383 ~~~~h~~~V-~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
.+.+|...| .++.| ++++|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|++ .+++|+.|++|++
T Consensus 116 ~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~---~~~~h~~~V~~l~~~~~~---~l~s~s~dg~i~v 187 (464)
T 3v7d_B 116 TLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVRV 187 (464)
T ss_dssp EEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECSTT---EEEEEETTSCEEE
T ss_pred EEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEE---EEeCCCcCEEEEEEcCCC---EEEEEeCCCCEEE
Confidence 477898875 55555 57899999999999999999987655 778999999999999887 5899999999999
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-----------------------eEeec
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-----------------------RVDYD 518 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-----------------------~~~~~ 518 (1084)
||+++++.+..+.+|...|.+++|.+.+++.++++++.||.|++||+..... ...+.
T Consensus 188 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (464)
T 3v7d_B 188 WDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR 267 (464)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred EECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence 9999999999999999999999998878889999999999999999987653 23455
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd 598 (1084)
.+...+.++ +++++++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|+++++++|+.||.|++||
T Consensus 268 ~~~~~v~~~--~~~~~~l~~~~~----d~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~dg~i~vwd 338 (464)
T 3v7d_B 268 GHMASVRTV--SGHGNIVVSGSY----DNTLIVWDVAQMKCLYILSGHT---DRIYSTIYDHERKRCISASMDTTIRIWD 338 (464)
T ss_dssp CCSSCEEEE--EEETTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CccceEEEE--cCCCCEEEEEeC----CCeEEEEECCCCcEEEEecCCC---CCEEEEEEcCCCCEEEEEeCCCcEEEEE
Confidence 566666665 688999999986 6679999999999999999888 8999999999999999999999999999
Q ss_pred CCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCc
Q 001403 599 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG 678 (1084)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~ 678 (1084)
+.+++.+..+..+.. .|.+++|+ +.++++++.||.|++||+.+.......
T Consensus 339 ~~~~~~~~~~~~h~~--~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~-------------------------- 388 (464)
T 3v7d_B 339 LENGELMYTLQGHTA--LVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY-------------------------- 388 (464)
T ss_dssp TTTTEEEEEECCCSS--CEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--------------------------
T ss_pred CCCCcEEEEEeCCCC--cEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--------------------------
Confidence 999999999986644 58888887 579999999999999998754211000
Q ss_pred eeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 679 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 679 ~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
T Consensus 389 -------------------------------------------------------------------------------- 388 (464)
T 3v7d_B 389 -------------------------------------------------------------------------------- 388 (464)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEE-EcCCCCC
Q 001403 759 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT-IMPPSPT 837 (1084)
Q Consensus 759 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~-~~~~~~~ 837 (1084)
.+...+..++|++++++++++++|.|++||+.+++.+.. +..|...
T Consensus 389 ---------------------------------~~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~~~~~~~~~~ 435 (464)
T 3v7d_B 389 ---------------------------------HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQ 435 (464)
T ss_dssp ---------------------------------ECTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEESCTTTTCSE
T ss_pred ---------------------------------cCCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEehhhccCCCc
Confidence 033445677889999999999999999999999999886 6678899
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEE
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYN 864 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd 864 (1084)
|.+++|+ ++.++++++.||.+.+|-
T Consensus 436 v~~v~~~--~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 436 IWSVNFK--GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp EEEEEEE--TTEEEEEEEETTEEEEEE
T ss_pred EEEEEec--CCEEEEEEEeCCeEEEEE
Confidence 9999997 466777788888766654
No 59
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=4.8e-34 Score=324.22 Aligned_cols=298 Identities=13% Similarity=0.111 Sum_probs=247.9
Q ss_pred cceeeecccCCCCceEEEEcCCC-ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCC
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS 401 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg-~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~ 401 (1084)
....+.+.+|.+.|.+++|+|+| ++||+++.| +.|+|||+.+....... ...+|...|.+++|+| +++
T Consensus 63 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 63 YKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKG---------GDIILWDYDVQNKTSFI-QGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp CEEEEEECCCSSCEEEEEECSSCTTEEEEEEBT---------SCEEEEETTSTTCEEEE-CCCSTTCBEEEEEEETTEEE
T ss_pred cceEEeccCCCCCEEEEEECCCCCCEEEEEcCC---------CeEEEEeCCCcccceee-ecCCcCCceeEEEeCCCCCC
Confidence 35567889999999999999999 999999888 99999999876654332 1347999999999999 789
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|++++.|+.|++||+.+. .+.......+|...|.+++|+|+++ ++++++.|+.|++||+ +++.+..+.+|...|.
T Consensus 133 ~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGS-VIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEETTTEEEEEETTSC-EEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEEECSSSCEE
T ss_pred EEEEEeCCCEEEEEECCCC-ceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEeccCCCcEE
Confidence 9999999999999999963 3333323344558899999999999 8999999999999998 6888999999999999
Q ss_pred EEeecccCCCc-EEEEEecCCeEEEEECCC----CCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEEEecCC
Q 001403 482 SLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 482 ~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
+++|++ ++. ++++++.||.|++||+.+ ......+ .+...+.+++|+| ++++|++++. ++.|++||+.
T Consensus 209 ~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~ 281 (383)
T 3ei3_B 209 HAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSY 281 (383)
T ss_dssp EEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETT
T ss_pred EEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECC
Confidence 999965 556 999999999999999987 3344444 5788999999999 9999999986 6779999999
Q ss_pred CceEeeeeeccccc--------------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 556 EGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 556 ~~~~~~~~~~~~~~--------------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+++....+.+|... ...+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+..++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence 98887777655311 133445666777666 77799999999999999999998765555677889
Q ss_pred EecCCCEEEEEECCCeEEEEEcCC
Q 001403 622 FNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+|++++|++++ |+.|++|++.+
T Consensus 360 ~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 360 FSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCccEEEEec-CCcEEEEecCC
Confidence 999999999997 89999999874
No 60
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=100.00 E-value=2.7e-33 Score=327.05 Aligned_cols=305 Identities=18% Similarity=0.230 Sum_probs=265.1
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG 404 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la 404 (1084)
....++.+|.+.|.. ++++++++||+|+.| ++|++||+.++..... +.+|...|.+++|+|++ +|+
T Consensus 112 ~~~~~l~~h~~~v~~-~~~~~~~~l~sgs~d---------g~i~vwd~~~~~~~~~---~~~h~~~V~~l~~~~~~-~l~ 177 (464)
T 3v7d_B 112 PQRTTLRGHMTSVIT-CLQFEDNYVITGADD---------KMIRVYDSINKKFLLQ---LSGHDGGVWALKYAHGG-ILV 177 (464)
T ss_dssp CEEEEEECCSSSCEE-EEEEETTEEEEEETT---------SCEEEEETTTTEEEEE---ECCCSSCEEEEEECSTT-EEE
T ss_pred cceEEEcCCCCCcEE-EEEECCCEEEEEcCC---------CcEEEEECCCCcEEEE---EeCCCcCEEEEEEcCCC-EEE
Confidence 345678999988643 344477899999888 9999999988765433 67899999999999998 999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCce-------------
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR------------- 469 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~------------- 469 (1084)
+|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++||+.++..
T Consensus 178 s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~ 252 (464)
T 3v7d_B 178 SGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLV 252 (464)
T ss_dssp EEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC------CCSSEE
T ss_pred EEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCcccccccccCCcceE
Confidence 99999999999999987555 7789999999999995 556 899999999999999987753
Q ss_pred ----------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEE
Q 001403 470 ----------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 470 ----------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+..+.+|...|.++.. ++.++++++.||.|++||+.+.+....+..+...+.+++|+|++++++++
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg 328 (464)
T 3v7d_B 253 FHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISA 328 (464)
T ss_dssp ESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred eeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEE
Confidence 4567889999998854 55799999999999999999998888999999999999999999999999
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
+. ++.|++||+.+++.+..+.+|. ..|.+++|+ ++++++++.||.|++||+.++......... ..+..
T Consensus 329 ~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~---~~~~~ 396 (464)
T 3v7d_B 329 SM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHT---NLSAI 396 (464)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECT---TCCCE
T ss_pred eC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCC---CCccE
Confidence 86 6679999999999999999988 899999997 579999999999999999998877666432 24678
Q ss_pred EEEecCCCEEEEEECCCeEEEEEcCCCCeeee-ccccccceeEEEEc
Q 001403 620 ICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN 665 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~ 665 (1084)
++|+++++++++++ ||.|++||+.+++.+.. ...+...|.+++++
T Consensus 397 ~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~ 442 (464)
T 3v7d_B 397 TTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK 442 (464)
T ss_dssp EEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred EEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence 89999999999998 89999999999998875 67788888888886
No 61
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=100.00 E-value=4.3e-33 Score=310.71 Aligned_cols=315 Identities=21% Similarity=0.297 Sum_probs=253.0
Q ss_pred EEEEEcCCccccceeeeecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCCccc--cceeeeecccccEeEEEeec
Q 001403 367 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 367 v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~ 443 (1084)
+.++...+....+. ..|.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++.. .....+.+|...|.+++|+|
T Consensus 18 ~~~~~~~~~~~~l~-~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~ 96 (340)
T 4aow_A 18 LYFQSMMTEQMTLR-GTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS 96 (340)
T ss_dssp --------CEEEEE-EEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT
T ss_pred EEEEEccCCceEEE-EEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC
Confidence 44444433333332 348999999999999997 689999999999999999876542 23346789999999999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGL 522 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~ 522 (1084)
+++ +|++++.|+.|++|+...+........+...+..+.+.+ ++.++++++.|+.+++||+...... .....+..
T Consensus 97 dg~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~ 172 (340)
T 4aow_A 97 DGQ--FALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSE 172 (340)
T ss_dssp TSS--EEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSS
T ss_pred CCC--EEEEEcccccceEEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccC
Confidence 999 899999999999999999999888888999998888854 5679999999999999998765443 34556777
Q ss_pred eEEEEEEcCCC--CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 523 GCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 523 ~i~~~~~s~d~--~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
.+..++|++++ .++++++. ++.|++||+.+++.+..+.+|. ..|.+++|+|++++|++|+.||.|++||+.
T Consensus 173 ~v~~~~~~~~~~~~~~~s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~ 245 (340)
T 4aow_A 173 WVSCVRFSPNSSNPIIVSCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLN 245 (340)
T ss_dssp CEEEEEECSCSSSCEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETT
T ss_pred cccceEEccCCCCcEEEEEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEec
Confidence 89999998875 45666664 6679999999999999999988 899999999999999999999999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+++.+..+..+. .+.+++|+|++.++ +++.|+.|++||+.++..+..+..+...
T Consensus 246 ~~~~~~~~~~~~---~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~---------------------- 299 (340)
T 4aow_A 246 EGKHLYTLDGGD---IINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVIS---------------------- 299 (340)
T ss_dssp TTEEEEEEECSS---CEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------------------------
T ss_pred cCceeeeecCCc---eEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEecccccee----------------------
Confidence 999999887654 48999999988655 5556899999999887655544321100
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCC
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN 758 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~ 758 (1084)
.....|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus 300 ---------------------------------------~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 300 ---------------------------------------TSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp -------------------------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred ---------------------------------------eeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence 001237788999999999999999999999999997654
No 62
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=8.6e-34 Score=324.04 Aligned_cols=298 Identities=12% Similarity=0.105 Sum_probs=256.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc----ccceeeeecCCCCCeEEEEEcCC-
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS----MLFKTALVRDPGVSVNRVVWSPD- 399 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~----~~~~~~~~~~h~~~V~~v~fspd- 399 (1084)
...+++.+|.+.|.+++|+| ++||+++.| ++|+|||+.+.. ... ...+.+|...|.+++|+|+
T Consensus 7 ~~~~~~~~h~~~i~~~~~~~--~~l~s~~~d---------g~i~iw~~~~~~~~~~~~~-~~~~~~h~~~v~~~~~~~~~ 74 (397)
T 1sq9_A 7 ATANAGKAHDADIFSVSACN--SFTVSCSGD---------GYLKVWDNKLLDNENPKDK-SYSHFVHKSGLHHVDVLQAI 74 (397)
T ss_dssp EEEEESSCSSSCEEEEEECS--SEEEEEETT---------SEEEEEESBCCTTCCGGGG-EEEEECCTTCEEEEEEEEEE
T ss_pred hhhhhhhhhhcCeEEEEecC--CeEEEEcCC---------CEEEEEECCCcccccCCCc-ceEEecCCCcEEEEEEeccc
Confidence 45678899999999999999 899999888 999999998766 111 1236689999999999999
Q ss_pred ---C---CEEEEEeCCCEEEEEEccCCccccc--eeeeecc-----cccEeEEEee----cCCCcEE-EEEEeCCCcEEE
Q 001403 400 ---G---SLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAH-----VGNVNDLAFS----APCKQIS-VITCGDDKTIKV 461 (1084)
Q Consensus 400 ---g---~~las~~~dg~v~iwd~~~~~~~~~--~~~l~~h-----~~~V~~l~~s----~d~~~l~-l~s~~~d~~i~v 461 (1084)
| ++|++++.|+.|++||+.+++.... ...+..| ...|.+++|+ |+++ + +++++.|+.|++
T Consensus 75 ~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~i 152 (397)
T 1sq9_A 75 ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTYI 152 (397)
T ss_dssp ETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEEE
T ss_pred ccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEEE
Confidence 9 9999999999999999998875100 2366778 5899999999 9999 8 999999999999
Q ss_pred EECCC------Cceee-----Eec-------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC---C
Q 001403 462 WDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---P 520 (1084)
Q Consensus 462 wd~~~------g~~~~-----~~~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~---~ 520 (1084)
||+.+ ++.+. .+. .|...|.+++|++ ++ ++++++.||.|++||+++.+....+.. +
T Consensus 153 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h 229 (397)
T 1sq9_A 153 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 229 (397)
T ss_dssp EEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC--
T ss_pred EeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEeccccc
Confidence 99998 77776 774 4899999999955 66 999999999999999999888888887 7
Q ss_pred ---CCeEEEEEEcCCCCEEEEEeeCCCCC---eeEEEecCCCceEeeeeec-------------cccccCceEEEEEcCC
Q 001403 521 ---GLGCTRMAYSANGRRLFSCGTSKEGE---SFLVEWNESEGAIKRTYQG-------------LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 521 ---~~~i~~~~~s~d~~~l~~~~~~~~~~---~~i~~wd~~~~~~~~~~~~-------------~~~~~~~v~~~~~s~~ 581 (1084)
...+.+++|+|++++|++++. + +.|++||+.+++.+..+.+ |. ..|.+++|+|+
T Consensus 230 ~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~ 302 (397)
T 1sq9_A 230 INNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVMSLSFNDS 302 (397)
T ss_dssp -CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEEEEEECSS
T ss_pred cccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccC---CcEEEEEECCC
Confidence 889999999999999999986 5 7899999999999999988 66 89999999999
Q ss_pred CCEEEEEECCCcEEEEECCCCeEEEEEc------CC-------------CCCCCcceEEEecCC----------CEEEEE
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG----------TLLAVI 632 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~~----------~~l~~~ 632 (1084)
+++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|+++
T Consensus 303 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~ 382 (397)
T 1sq9_A 303 GETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV 382 (397)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEE
T ss_pred CCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEe
Confidence 9999999999999999999999999988 43 003469999999998 799999
Q ss_pred ECCCeEEEEEcCCC
Q 001403 633 ANENRIKILETPES 646 (1084)
Q Consensus 633 ~~dg~i~iwd~~~~ 646 (1084)
+.||.|++|++.++
T Consensus 383 ~~dg~i~iw~~~~g 396 (397)
T 1sq9_A 383 CLDRSIRWFREAGG 396 (397)
T ss_dssp ETTTEEEEEEEEC-
T ss_pred cCCCcEEEEEcCCC
Confidence 99999999998865
No 63
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.7e-33 Score=314.30 Aligned_cols=292 Identities=12% Similarity=0.078 Sum_probs=257.9
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV 405 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 405 (1084)
....|.+|.+.|.+++|+|||++||++..| +.|+|||+.++.... .+.+|...|.+++|+|++++|++
T Consensus 24 ~~~~l~~h~~~v~~~~~s~~~~~l~~~~~d---------g~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~s 91 (369)
T 3zwl_B 24 KAIKLTGHERPLTQVKYNKEGDLLFSCSKD---------SSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTKYCVT 91 (369)
T ss_dssp EEEEEECCSSCEEEEEECTTSCEEEEEESS---------SCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSSEEEE
T ss_pred ccEEEEEeeceEEEEEEcCCCCEEEEEeCC---------CEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCCEEEE
Confidence 445688999999999999999999999888 999999998876543 37789999999999999999999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCCCc-----------e
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS-----------R 469 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~g~-----------~ 469 (1084)
++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++||+.++. .
T Consensus 92 ~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~ 165 (369)
T 3zwl_B 92 GSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEP 165 (369)
T ss_dssp EETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSC
T ss_pred EeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceeecccccce
Confidence 9999999999999987665 344 888999999999999 78888888 999999988664 3
Q ss_pred eeEeccCCC--cEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 470 TYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 470 ~~~~~~h~~--~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+..+..|.. .+.+++|++ ++.++++++.||.|++||+.+ ......+..+...+.+++|+|++++|++++. +
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d 239 (369)
T 3zwl_B 166 IHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSR----D 239 (369)
T ss_dssp SEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEET----T
T ss_pred eeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecC----C
Confidence 455566666 899999965 668999999999999999998 5667778888999999999999999999975 6
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC--------------cEEEEECCCCeEEEEEcCCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~ 612 (1084)
+.|++||+.+++.+..+.. . ..+..++|+|+++++++++.++ .+++||..+++.+..+..+.
T Consensus 240 ~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 315 (369)
T 3zwl_B 240 TNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHF 315 (369)
T ss_dssp SEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCS
T ss_pred ceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheeccc
Confidence 6799999999999888873 3 6899999999999999999888 89999999999999998665
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
. .|.+++|+|++++|++++.||.|++|++..+.
T Consensus 316 ~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~ 348 (369)
T 3zwl_B 316 G--PLNTVAISPQGTSYASGGEDGFIRLHHFEKSY 348 (369)
T ss_dssp S--CEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred C--cEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence 4 69999999999999999999999999998653
No 64
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-33 Score=327.46 Aligned_cols=294 Identities=12% Similarity=0.176 Sum_probs=224.8
Q ss_pred CCCCCCcchhhhcccccCCCccCCCccceeeec-ccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCC-
Q 001403 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGA- 374 (1084)
Q Consensus 298 ~~fsP~~s~~~~~f~~~~~~~~~~~p~~~~~~l-~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~- 374 (1084)
..|+|++..+..... ++.....+..+ .+|.+.|.+++|+| ||++||+++.| ++|+|||+.+
T Consensus 33 ~~f~~~~~~~~~~~~-------w~~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~d---------g~v~vwd~~~~ 96 (437)
T 3gre_A 33 KEFGPIQEIVRSPNM-------GNLRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQ---------GVIKIWNLKEI 96 (437)
T ss_dssp GGGCCCCCCCCCCCG-------GGCCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETT---------SEEEEEEHHHH
T ss_pred hhcCCcccccccccc-------ccccceEEeeeccCCCCceEEEEECCCCCCEEEEecCC---------ceEEEeECccc
Confidence 356777666544331 23345677778 89999999999999 99999999988 9999999976
Q ss_pred --ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc---CCccccceeeeecccccEeEEEeecCCCcEE
Q 001403 375 --CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 449 (1084)
Q Consensus 375 --~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~---~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~ 449 (1084)
... .......+|...|.+++|+|++++|++++.||+|++||+. +++... .+.+| .|..+.|+|++
T Consensus 97 ~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~---- 166 (437)
T 3gre_A 97 IVGEV-YSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG---- 166 (437)
T ss_dssp HTTCC-CSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS----
T ss_pred ccCcc-cceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc----
Confidence 321 1111122599999999999999999999999999999995 554333 34444 67777777643
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecC--CCCeEEEE
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRM 527 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~ 527 (1084)
+...+.++.+...+++.++++++.||.|++||+++.+....+.. +...|.++
T Consensus 167 --------------------------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~ 220 (437)
T 3gre_A 167 --------------------------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSI 220 (437)
T ss_dssp --------------------------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEE
T ss_pred --------------------------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEE
Confidence 23334445544466788999999999999999999998888877 67899999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee-ccccccCceEEEEEc----CCCCEEEEEECCCcEEEEECCCC
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~-~~~~~~~~v~~~~~s----~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
+|+|++++|++++. ++.|++||+++++.+..+. .+. ..|.+++|+ |++.++++++.||.|++||+.++
T Consensus 221 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~ 293 (437)
T 3gre_A 221 CIDEECCVLILGTT----RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKG 293 (437)
T ss_dssp EECTTSCEEEEEET----TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTT
T ss_pred EECCCCCEEEEEcC----CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCC
Confidence 99999999999986 6679999999999988876 555 689999555 56779999999999999999999
Q ss_pred eEEEEEcCCCC------------------------CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeee
Q 001403 603 QLLTTIDAGGG------------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA 651 (1084)
Q Consensus 603 ~~~~~~~~~~~------------------------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 651 (1084)
+.+..+..+.. ...|.+++|+ ++++|++++.|+.|++||+.+++....
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~ 365 (437)
T 3gre_A 294 HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA 365 (437)
T ss_dssp EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence 99988875532 2235566666 556666666666666666665544433
No 65
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.1e-33 Score=306.03 Aligned_cols=293 Identities=20% Similarity=0.259 Sum_probs=255.2
Q ss_pred cceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
....+++.+|.+.|.+++| |++++||+++.| +.|+|||+.+...... +..|...|.+++|+|++++|
T Consensus 8 ~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~d---------g~v~vw~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l 74 (313)
T 3odt_A 8 YQLSATLKGHDQDVRDVVA-VDDSKVASVSRD---------GTVRLWSKDDQWLGTV---VYTGQGFLNSVCYDSEKELL 74 (313)
T ss_dssp CEEEEEECCCSSCEEEEEE-EETTEEEEEETT---------SEEEEEEESSSEEEEE---EEECSSCEEEEEEETTTTEE
T ss_pred HHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcC---------CcEEEEECCCCEEEEE---eecCCccEEEEEECCCCCEE
Confidence 3567889999999999999 999999999888 9999999977654432 56689999999999999999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
++++.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|...+.++
T Consensus 75 ~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~ 148 (313)
T 3odt_A 75 LFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDA 148 (313)
T ss_dssp EEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEE
T ss_pred EEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEecccCCCceeEE
Confidence 99999999999999876555555578899999999999 456 799999999999999 788888999999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.+. ++.++++++.||.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+.+++.+..
T Consensus 149 ~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~~~~~~~ 220 (313)
T 3odt_A 149 KVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHTGDVLRT 220 (313)
T ss_dssp EEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTTCCEEEE
T ss_pred EEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCchhhhhh
Confidence 99763 457999999999999999 3345555555 778999999999999 777764 67799999999999999
Q ss_pred eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEE
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE 642 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd 642 (1084)
+.+|. ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .+.+++|+|+++ +++++.||.|++|+
T Consensus 221 ~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i~iw~ 293 (313)
T 3odt_A 221 YEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLVRIFS 293 (313)
T ss_dssp EECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred hhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence 99888 899999999999 689999999999999999999999987654 699999999998 66789999999999
Q ss_pred cCCCCeee
Q 001403 643 TPESNSVD 650 (1084)
Q Consensus 643 ~~~~~~~~ 650 (1084)
+.+++...
T Consensus 294 ~~~~~~~~ 301 (313)
T 3odt_A 294 QEKSRWAS 301 (313)
T ss_dssp SCGGGCCC
T ss_pred CCCCceee
Confidence 99875543
No 66
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=1.7e-33 Score=316.43 Aligned_cols=299 Identities=11% Similarity=0.190 Sum_probs=245.5
Q ss_pred ccceeeecccCCCCceEEEEcCCCc-eeeeecc---cccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 323 PKTVAQTLIEGSSSPMSMDFHPVQH-TLLLGLW---DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 323 p~~~~~~l~~h~~~V~~v~~spdg~-~las~~~---d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
|......+.+|.+.|.+++|+|+|. +++++++ | +.|+|||+.++...... ..+|...|.+++|+|
T Consensus 7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d---------~~v~iw~~~~~~~~~~~--~~~~~~~v~~~~~~~ 75 (357)
T 3i2n_A 7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGT---------GVIQLYEIQHGDLKLLR--EIEKAKPIKCGTFGA 75 (357)
T ss_dssp CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCC---------EEEEEEEECSSSEEEEE--EEEESSCEEEEECTT
T ss_pred hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCC---------cEEEEEeCCCCccccee--eecccCcEEEEEEcC
Confidence 3445566789999999999999995 5556665 5 99999999986654332 336899999999999
Q ss_pred C---CCEEEEEeCCCEEEEEEccCCc-cccceeeeecccccEeEEE------eecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 399 D---GSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 399 d---g~~las~~~dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~l~------~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
+ |++|++++.||.|++||+.+++ .+. .+.+|...|.+++ |+|+++ +|++++.|+.|++||+.++.
T Consensus 76 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~ 150 (357)
T 3i2n_A 76 TSLQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKD 150 (357)
T ss_dssp CCTTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCS
T ss_pred CCCCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCC
Confidence 8 7999999999999999999886 333 6789999999995 568898 89999999999999999987
Q ss_pred -eeeEeccCCC----cEEEEeecc--cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC---CCCEEEE
Q 001403 469 -RTYSFEGHGA----PVYSLCPHA--KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---NGRRLFS 538 (1084)
Q Consensus 469 -~~~~~~~h~~----~v~~~~~~~--~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d~~~l~~ 538 (1084)
.+..+..|.+ .+.+++|.+ ++++.++++++.||.|++||+++.+.... ..+...+.+++|+| +++++++
T Consensus 151 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 151 DPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred CcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 6778876655 788888421 45778999999999999999998776443 55677899999999 9999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeee-----ccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC----------
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV---------- 602 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~-----~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~---------- 602 (1084)
++. ++.|++||+.+++....+. +|. ..|.+++|+|+++ ++++++.||.|++||+.++
T Consensus 230 ~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g 302 (357)
T 3i2n_A 230 TSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEG 302 (357)
T ss_dssp EES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTS
T ss_pred ECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCC
Confidence 876 6779999999887766554 666 8999999999998 8999999999999998754
Q ss_pred ---------eEEEEEcCCCCCCCcceEEEecCCCEEE-EEECCCeEEEEEcCCCC
Q 001403 603 ---------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN 647 (1084)
Q Consensus 603 ---------~~~~~~~~~~~~~~v~~v~~s~~~~~l~-~~~~dg~i~iwd~~~~~ 647 (1084)
+.+..+..+. ..|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus 303 ~~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~ 355 (357)
T 3i2n_A 303 IEMGVAGSVSLLQNVTLST--QPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN 355 (357)
T ss_dssp CCCCCCCEEEEEEEEECCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred CccccccccceeeccccCC--CCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence 3555666553 4699999999999998 79999999999998653
No 67
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=100.00 E-value=6.1e-33 Score=315.12 Aligned_cols=308 Identities=16% Similarity=0.167 Sum_probs=244.6
Q ss_pred EEecCCCceEeeeeeccccccCceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCC
Q 001403 550 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGT 627 (1084)
Q Consensus 550 ~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~ 627 (1084)
.+|+....+....+.+|. ..|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| +++
T Consensus 56 ~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 132 (383)
T 3ei3_B 56 FIRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTN 132 (383)
T ss_dssp HHHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEE
T ss_pred ccccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCC
Confidence 345556677778888887 899999999999 999999999999999999999888887655566799999999 789
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 628 LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+|++++.|+.|++||+.+. .+..+..
T Consensus 133 ~l~s~~~d~~i~iwd~~~~-~~~~~~~----------------------------------------------------- 158 (383)
T 3ei3_B 133 QLFVSSIRGATTLRDFSGS-VIQVFAK----------------------------------------------------- 158 (383)
T ss_dssp EEEEEETTTEEEEEETTSC-EEEEEEC-----------------------------------------------------
T ss_pred EEEEEeCCCEEEEEECCCC-ceEEEec-----------------------------------------------------
Confidence 9999999999999998742 1110000
Q ss_pred eeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccccc
Q 001403 708 LFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND 787 (1084)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 787 (1084)
T Consensus 159 -------------------------------------------------------------------------------- 158 (383)
T 3ei3_B 159 -------------------------------------------------------------------------------- 158 (383)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEeCCCeEEEEEc
Q 001403 788 TTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNA 865 (1084)
Q Consensus 788 ~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~~dg~i~iwd~ 865 (1084)
...+...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.|+.|++||+
T Consensus 159 --~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~ 234 (383)
T 3ei3_B 159 --TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDL 234 (383)
T ss_dssp --CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEG
T ss_pred --cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeC
Confidence 001456678888888888888887 688999998 5778888899999999999999 777 9999999999999999
Q ss_pred CC----ceeeeeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeec--CCCCcc-------CCCCc
Q 001403 866 RS----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSE 931 (1084)
Q Consensus 866 ~~----~~~~~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v 931 (1084)
.+ +.++..+ +|...|++++|+| ++++|++++.|+.|++||+.+++......... ...+.. ....+
T Consensus 235 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 313 (383)
T 3ei3_B 235 RNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDL 313 (383)
T ss_dssp GGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSE
T ss_pred CCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCc
Confidence 98 5666666 6999999999999 99999999999999999999876433211111 011111 01234
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 932 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
..++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+|||++|++++ ||.|++||+++
T Consensus 314 ~~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 314 IVAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp EEEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred eEEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 45666666666 3357899999999999998886533 467788889999999999997 99999999875
No 68
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=3e-33 Score=320.74 Aligned_cols=348 Identities=11% Similarity=0.123 Sum_probs=242.4
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcC-----------CCCC
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGL 614 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~ 614 (1084)
..+++|+...++....+.+|. +.|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+.
T Consensus 23 ~~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (408)
T 4a11_B 23 STRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHR 99 (408)
T ss_dssp HHHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCS
T ss_pred CcceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCC
Confidence 347788888888888888887 9999999999 999999999999999999998765443321 1234
Q ss_pred CCcceEEEec-CCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 615 PENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 615 ~~v~~v~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
..|.+++|+| ++.++++++.||.|++||+.+++....+.
T Consensus 100 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---------------------------------------- 139 (408)
T 4a11_B 100 YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN---------------------------------------- 139 (408)
T ss_dssp SCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE----------------------------------------
T ss_pred CcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc----------------------------------------
Confidence 5689999999 77899999999999999988654332211
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
T Consensus 140 -------------------------------------------------------------------------------- 139 (408)
T 4a11_B 140 -------------------------------------------------------------------------------- 139 (408)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecC---CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 849 (1084)
+...+.++++++ ++.++++++ ++.|++||+.+++.+..+..|...|.+++|+| ++.
T Consensus 140 -------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~ 199 (408)
T 4a11_B 140 -------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYD 199 (408)
T ss_dssp -------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCT
T ss_pred -------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCC
Confidence 112233334443 445777776 68899999999999999999999999999999 666
Q ss_pred -EEEEEeCCCeEEEEEcCCce-eeeee---------------cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce
Q 001403 850 -VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 850 -~la~g~~dg~i~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
+|++|+.||.|++||+.+++ .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 200 ~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~ 279 (408)
T 4a11_B 200 YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGEN 279 (408)
T ss_dssp TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCB
T ss_pred cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcc
Confidence 69999999999999998765 33333 57899999999999999999999999999999998764
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 992 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 992 (1084)
............. ............+.+++++.++.|++||+.+++.+.. +.+|...|.+++|+||+++|++++.||
T Consensus 280 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg 356 (408)
T 4a11_B 280 TLVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDC 356 (408)
T ss_dssp CCCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTS
T ss_pred ceecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCC
Confidence 3211111111111 1123334445556666668999999999999999887 457999999999999999999999999
Q ss_pred cEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 993 TLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 993 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.|++||+.+++.+....... ....+.|.+...+.+.+.+|.+++|+.+
T Consensus 357 ~i~iw~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 357 NILAWVPSLYEPVPDDDETT-------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp CEEEEEECC----------------------------------------------------
T ss_pred eEEEEeCCCCCccCCCCceE-------------eccccccccceeecccCccCceeecCCc
Confidence 99999999998774443111 0112333234567778899999999874
No 69
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.4e-32 Score=308.49 Aligned_cols=287 Identities=12% Similarity=0.147 Sum_probs=258.1
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|++++|+|+|++||+++.||.|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|
T Consensus 27 ~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~iw 101 (369)
T 3zwl_B 27 KLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKLW 101 (369)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEEE
T ss_pred EEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 378899999999999999999999999999999999987655 7789999999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCc-----------eEeecCCCC--eE
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--GC 524 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~i 524 (1084)
|+.+++.+..+. |...|.+++|++ ++.++++++.+ |.|++||+..... ...+..+.. .+
T Consensus 102 d~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (369)
T 3zwl_B 102 DVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAA 178 (369)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCE
T ss_pred ECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccce
Confidence 999999998888 889999999955 67899999999 9999999976542 223334444 89
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|. ..|.+++|+|++++|++++.||.|++||+.+++
T Consensus 179 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~ 251 (369)
T 3zwl_B 179 TVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQ 251 (369)
T ss_dssp EEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred eEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCCc
Confidence 99999999999999875 67799999998 78888888887 899999999999999999999999999999999
Q ss_pred EEEEEcCCCCCCCcceEEEecCCCEEEEEECCC--------------eEEEEEcCCCCeeeeccccccceeEEEEcCCCc
Q 001403 604 LLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIST 669 (1084)
Q Consensus 604 ~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~ 669 (1084)
.+..+... ..+..++|+|+++++++++.++ .+++||..+++.+..+.+|...|.+++|+
T Consensus 252 ~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---- 324 (369)
T 3zwl_B 252 VLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---- 324 (369)
T ss_dssp EEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC----
T ss_pred eeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC----
Confidence 99888743 3489999999999999999988 89999999999999999999999999997
Q ss_pred eeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 670 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 670 ~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
|+++++++++.|+.+++|++..
T Consensus 325 ------------------~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 325 ------------------PQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------------------TTSSEEEEEETTSEEEEEEECH
T ss_pred ------------------CCCCEEEEEcCCCeEEEEECcc
Confidence 6788899999999999999874
No 70
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=2.3e-33 Score=316.57 Aligned_cols=292 Identities=15% Similarity=0.193 Sum_probs=244.4
Q ss_pred eecccCCCCceEEEEcCC----CceeeeecccccCccccccceEEEEEcCCccccceeee--ecCCCCCeEEEEEcCC--
Q 001403 328 QTLIEGSSSPMSMDFHPV----QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL--VRDPGVSVNRVVWSPD-- 399 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spd----g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~--~~~h~~~V~~v~fspd-- 399 (1084)
..+.+|.+.|.+++|+|+ ...++++..+ +.|+|||+.+......... ...|...|.+++|+|+
T Consensus 12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~---------~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 82 (366)
T 3k26_A 12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGS---------NRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSN 82 (366)
T ss_dssp EEECTTCSCEEEEEECTTCCTTSCEEEEEEET---------TEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTT
T ss_pred EeecCCCCceEEEEEecccCCCCceEEEECCC---------CEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCC
Confidence 455699999999999994 4445554444 7899999987655433221 2237789999999999
Q ss_pred --CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 400 --GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 400 --g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. ++++++.|+.|++||+.+++.+..+
T Consensus 83 ~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 157 (366)
T 3k26_A 83 TSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGGV 157 (366)
T ss_dssp TCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECST
T ss_pred CCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEeccc
Confidence 6799999999999999999987655 6779999999999999 788 8999999999999999999999888
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee----------------------------cCCCCeEE
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----------------------------DAPGLGCT 525 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~----------------------------~~~~~~i~ 525 (1084)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+ ..+...|.
T Consensus 158 ~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 235 (366)
T 3k26_A 158 EGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVD 235 (366)
T ss_dssp TSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCC
T ss_pred ccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEE
Confidence 78999999999965 6789999999999999999875443322 23778899
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE--------------eeeeeccccccCceEEEEEcCC--CCEEEEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQILAAG 589 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~--------------~~~~~~~~~~~~~v~~~~~s~~--~~~l~~~~ 589 (1084)
+++|+ ++++++++. ++.|++||+.++.. +..+..|. ..|.+++|+|+ +++|++++
T Consensus 236 ~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~l~~~~ 306 (366)
T 3k26_A 236 CVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKMLALGN 306 (366)
T ss_dssp EEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSEEEEEC
T ss_pred EEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcEEEEEe
Confidence 99998 778998875 67799999987644 66777776 78999999999 99999999
Q ss_pred CCCcEEEEECCCCe----EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.||.|++||+.+++ ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 307 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 307 QVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred cCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999999875 44567766545679999999999999999999999999975
No 71
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2e-33 Score=324.35 Aligned_cols=301 Identities=12% Similarity=0.119 Sum_probs=230.0
Q ss_pred eeeccccccCceEEEEEcCC-CCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEECCCeEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIK 639 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~dg~i~ 639 (1084)
....|. ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|+
T Consensus 114 ~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~ 190 (435)
T 4e54_B 114 KAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTR 190 (435)
T ss_dssp EEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEE
T ss_pred cCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEE
Confidence 344455 78999999994 6789999999999999999887666666555666899999998 789999999999999
Q ss_pred EEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeec
Q 001403 640 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL 719 (1084)
Q Consensus 640 iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~ 719 (1084)
+||+.++... .+.
T Consensus 191 iwd~~~~~~~-~~~------------------------------------------------------------------ 203 (435)
T 4e54_B 191 LQDFKGNILR-VFA------------------------------------------------------------------ 203 (435)
T ss_dssp EEETTSCEEE-EEE------------------------------------------------------------------
T ss_pred EeeccCCcee-EEe------------------------------------------------------------------
Confidence 9998643110 000
Q ss_pred cCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccE
Q 001403 720 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC 799 (1084)
Q Consensus 720 ~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 799 (1084)
. . + .+...+.+
T Consensus 204 ---------------~---------~-~--------------------------------------------~~~~~~~~ 214 (435)
T 4e54_B 204 ---------------S---------S-D--------------------------------------------TINIWFCS 214 (435)
T ss_dssp ---------------C---------C-S--------------------------------------------SCSCCCCC
T ss_pred ---------------c---------c-C--------------------------------------------CCCccEEE
Confidence 0 0 0 13345667
Q ss_pred EEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee---eec
Q 001403 800 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS---KLE 875 (1084)
Q Consensus 800 l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~---~l~ 875 (1084)
++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|+|||+.+++... ...
T Consensus 215 ~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~ 293 (435)
T 4e54_B 215 LDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSL 293 (435)
T ss_dssp EEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCC
T ss_pred EEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEee
Confidence 88888999888887 6889999985 456677888999999999999555689999999999999998876543 336
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE---------
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------- 946 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--------- 946 (1084)
+|...|++++|+|||++|++++.||+|+|||+.+++............ .....+..+.|+|++.+++++
T Consensus 294 ~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 371 (435)
T 4e54_B 294 PHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRH--FQHLTPIKAAWHPRYNLIVVGRYPDPNFKS 371 (435)
T ss_dssp BCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCC--CSSSCCCBCEECSSSSCEEEECCCCTTSCC
T ss_pred eccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccc--cccceeEEEEEcCCCCEEEEEEcCCCCeEE
Confidence 799999999999999999999999999999999876443222111110 000123345666666666653
Q ss_pred ----eCCeEEEEEcCCcceeeEeecCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 947 ----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 947 ----~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |+.|+|||+++|+..
T Consensus 372 ~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r 434 (435)
T 4e54_B 372 CTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR 434 (435)
T ss_dssp SSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred EEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence 235799999999999998888899999987 6999999999875 889999999998654
No 72
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=3.6e-33 Score=312.92 Aligned_cols=297 Identities=11% Similarity=0.111 Sum_probs=231.5
Q ss_pred CceEEEEcCCCceeeeecccc-cCccccccceEEEEEcCCccccc-------eeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 336 SPMSMDFHPVQHTLLLGLWDV-NSGQKLFIRNFKVWDIGACSMLF-------KTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~-~sg~~~~~~~v~iwd~~~~~~~~-------~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
+|.+++|+|||++||+|.-|. ++| .++.|+||++....... ....+.+|...|.+++++ ++.+++|.
T Consensus 16 PV~sv~fs~dg~~l~sGGg~~~~sG---i~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~ 90 (365)
T 4h5i_A 16 PAYGAKFLNNDTLLVAGGGGEGNNG---IPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGC 90 (365)
T ss_dssp CEEEEEEEETTEEEEEEECCSSSSS---CCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEEC
T ss_pred CEEEEEEeCCCcEEEEECCCccccC---CCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEE
Confidence 899999999999999986541 122 13679999997554321 112367888899888765 55676653
Q ss_pred -----------CCCEEEEEEccCCccccc-e-----eeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 408 -----------SKHIVQLYAYHGGSDARQ-Q-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 408 -----------~dg~v~iwd~~~~~~~~~-~-----~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
.|+++++|++.++..... . .....+...+.+++|||||+.+.+++++.|++|+|||+++++++
T Consensus 91 ~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~ 170 (365)
T 4h5i_A 91 NENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEK 170 (365)
T ss_dssp CCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEE
T ss_pred CCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEE
Confidence 467899999887543211 1 11223455689999999999655667778999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE--eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
..+. |...|.+++|+| ||+++++++.+ .+++|+..++.... ....+...+.+++|+|+++++++++.++.....
T Consensus 171 ~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~ 246 (365)
T 4h5i_A 171 FEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIV 246 (365)
T ss_dssp EEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEE
T ss_pred EEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeE
Confidence 8886 778899999954 77899998855 45666666666544 334567789999999999999999886655667
Q ss_pred EEEecCCCceE----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE-cCCCCCCCcceEEEe
Q 001403 549 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFN 623 (1084)
Q Consensus 549 i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s 623 (1084)
+++|+...+.. ...+.+|. ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ .+|. ..|.+++|+
T Consensus 247 i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~--~~V~~v~fS 321 (365)
T 4h5i_A 247 LTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHS--FAITEVTIS 321 (365)
T ss_dssp EEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSS--SCEEEEEEC
T ss_pred EeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCccc--CCEEEEEEC
Confidence 89999876654 33455666 88999999999999999999999999999999999876 4554 469999999
Q ss_pred cCCCEEEEEECCCeEEEEEcCCC
Q 001403 624 KNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|||++||+++.|++|+||+++..
T Consensus 322 pdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 322 PDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp TTSCEEEEEETTSEEEEEECCTT
T ss_pred CCCCEEEEEeCCCeEEEEEcCCC
Confidence 99999999999999999999754
No 73
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=100.00 E-value=2.1e-33 Score=324.18 Aligned_cols=302 Identities=16% Similarity=0.175 Sum_probs=237.5
Q ss_pred eeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC-CCCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp-dg~~l 403 (1084)
......+|...|+|++||| ++.+||+|+.| |+|+|||+.+....... .+.+|...|++++|+| ++++|
T Consensus 111 ~~~~~~~~~~~V~~l~~~P~~~~~lasGs~d---------g~i~lWd~~~~~~~~~~-~~~gH~~~V~~l~f~p~~~~~l 180 (435)
T 4e54_B 111 ILQKAAPFDRRATSLAWHPTHPSTVAVGSKG---------GDIMLWNFGIKDKPTFI-KGIGAGGSITGLKFNPLNTNQF 180 (435)
T ss_dssp SCCEEEECSSCEEEEEECSSCTTCEEEEETT---------SCEEEECSSCCSCCEEE-CCCSSSCCCCEEEECSSCTTEE
T ss_pred ecccCCCCCCCEEEEEEeCCCCCEEEEEeCC---------CEEEEEECCCCCceeEE-EccCCCCCEEEEEEeCCCCCEE
Confidence 3455678999999999999 56799999988 99999999876543322 2668999999999998 78999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 483 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~ 483 (1084)
++|+.||+|++||++++.. ........+...+.+++|+|+++ +|++|+.||.|++||++ ++.+..+.+|...|.++
T Consensus 181 ~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v 256 (435)
T 4e54_B 181 YASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHV 256 (435)
T ss_dssp EEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEE
T ss_pred EEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEecccceEEee
Confidence 9999999999999987542 22222234455688999999999 89999999999999975 56778899999999999
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEe---ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~---~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
+|+|.. ..++++++.|+.|++||+........ ...|...|.+++|+|+|++|++++. ++.|++||+.++...
T Consensus 257 ~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~~ 331 (435)
T 4e54_B 257 ALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDCP 331 (435)
T ss_dssp EECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSSE
T ss_pred eecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCccc
Confidence 997653 25889999999999999987665433 3567789999999999999999986 667999999998887
Q ss_pred eeeeccccc---cCceEEEEEcCCCCEEEEEE------------CCCcEEEEECCCCeEEEEEcCCCCCCCcceE-EEec
Q 001403 561 RTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRI-CFNK 624 (1084)
Q Consensus 561 ~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s~ 624 (1084)
..+..|... ...+..+.|+|++..+++++ .++.|++||..+++.+..+..+. ...|.++ +|+|
T Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v~s~~~fsp 410 (435)
T 4e54_B 332 LGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGISSLNEFNP 410 (435)
T ss_dssp EEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCCCCEEEECT
T ss_pred eEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcEEEEEEECC
Confidence 777655411 11233456777777666654 34679999999999998875432 2356776 6999
Q ss_pred CCCEEEEEECCCeEEEEEcCCCCe
Q 001403 625 NGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 625 ~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
+|++|++|+ |+.|+||++.+++.
T Consensus 411 dg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 411 MGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp TSSCEEEEC-SSEEEECCCC----
T ss_pred CCCEEEEEc-CCcEEEEECCcCee
Confidence 999999876 78999999998754
No 74
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=1.5e-32 Score=310.64 Aligned_cols=293 Identities=12% Similarity=0.051 Sum_probs=246.8
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+..|.+.|.+++|+|||++||++..| +.|+|||+.+...... ..+.+|...|.+++|+|++++|++++.|
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d---------~~v~i~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~l~~~~~d 73 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNN---------HEVHIYEKSGNKWVQV-HELKEHNGQVTGVDWAPDSNRIVTCGTD 73 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSS---------SEEEEEEEETTEEEEE-EEEECCSSCEEEEEEETTTTEEEEEETT
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCC---------CEEEEEeCCCCcEEee-eeecCCCCcccEEEEeCCCCEEEEEcCC
Confidence 45688999999999999999999777 9999999987652111 2367899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce---e-eEeccCCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEGHGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~---~-~~~~~h~~~v~~~~~ 485 (1084)
+.|++||+.+++.... ..+..|...|.+++|+|+++ ++++++.|+.|++||+.++.. . ....+|...|.+++|
T Consensus 74 g~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~ 150 (372)
T 1k8k_C 74 RNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDW 150 (372)
T ss_dssp SCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEE
T ss_pred CeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEE
Confidence 9999999988764332 24567999999999999999 899999999999999998863 3 333678999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECC------------------CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
++ ++.++++++.||.|++||+. .......+..+...+.+++|+|++++|++++. ++
T Consensus 151 ~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~ 224 (372)
T 1k8k_C 151 HP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH----DS 224 (372)
T ss_dssp CT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET----TT
T ss_pred cC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeC----CC
Confidence 65 66899999999999999954 45666777788889999999999999999985 67
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC--CeEE--------------------
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL-------------------- 605 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~--~~~~-------------------- 605 (1084)
.|++||+.+++.+..+..|. ..+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 225 ~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (372)
T 1k8k_C 225 TVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARE 300 (372)
T ss_dssp EEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHH
T ss_pred EEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhh
Confidence 79999999999999999887 899999999999877777 999999999987 5321
Q ss_pred ------------------EEEcCCCCCCCcceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001403 606 ------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES 646 (1084)
Q Consensus 606 ------------------~~~~~~~~~~~v~~v~~s-~~~---~~l~~~~~dg~i~iwd~~~~ 646 (1084)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~ 362 (372)
T 1k8k_C 301 RFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL 362 (372)
T ss_dssp HHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred hhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence 1111 1344579999866 676 99999999999999998764
No 75
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=100.00 E-value=1.7e-32 Score=307.35 Aligned_cols=203 Identities=12% Similarity=0.119 Sum_probs=172.4
Q ss_pred CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 793 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
+...+.+++|||||+++++++ |++|++||+.+++++..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus 132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence 556788999999999988664 6899999999999998886 777899999999 89999999855 56777777776
Q ss_pred ee--eeecccccCEEEEEEcCCCCEEEEEeCCC----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 870 VI--SKLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 870 ~~--~~l~~h~~~V~~l~~spd~~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
.+ ....+|...|.+++|+||++++++++.|+ .+++|++........ ......+|.. .|++++|||||++|
T Consensus 209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l 284 (365)
T 4h5i_A 209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA 284 (365)
T ss_dssp EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence 54 34567999999999999999999999887 688999887553322 1223344443 79999999999999
Q ss_pred EEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 944 LLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 944 a~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
|++ .|++|+|||+.+++++..+..+|..+|++++|||||++|++++.|++|+||+++..
T Consensus 285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 995 78999999999999999888899999999999999999999999999999999754
No 76
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=100.00 E-value=7.5e-32 Score=331.02 Aligned_cols=212 Identities=19% Similarity=0.315 Sum_probs=184.5
Q ss_pred eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-----ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCe
Q 001403 428 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK 502 (1084)
Q Consensus 428 ~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-----~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~ 502 (1084)
.+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++ .....+.+|...|.+++|++ ++.+|++++.||+
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~ 453 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE 453 (694)
T ss_dssp EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence 57899999999999998644 8999999999999998763 44578899999999999954 7789999999999
Q ss_pred EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 503 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 503 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
|++||+.++.....+..|...|.+++|+|++++|++++. ++.|++||...............|...|.+++|+|++
T Consensus 454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~ 529 (694)
T 3dm0_A 454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT 529 (694)
T ss_dssp EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence 999999999888899999999999999999999999986 6679999987655444433323334789999999986
Q ss_pred --CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001403 583 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 648 (1084)
Q Consensus 583 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 648 (1084)
..+++++.|++|++||+.+++....+..|.. .|.+++|+|++++|++++.||.|++||+.+++.
T Consensus 530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~ 595 (694)
T 3dm0_A 530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK 595 (694)
T ss_dssp SSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred CcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence 6899999999999999999999998886654 699999999999999999999999999887643
No 77
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4e-33 Score=312.75 Aligned_cols=317 Identities=10% Similarity=0.016 Sum_probs=246.8
Q ss_pred ccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 410 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg 410 (1084)
+.-.+.|.+++|||||+++|+++.| ++|+ |..... .+.+|...|.+|+|+|+| .++
T Consensus 12 ~~~~~~v~sv~~SpDG~~iASas~D---------~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg-------~~~ 67 (588)
T 2j04_A 12 KEFEDWKNNLTWARDGTLYLTTFPD---------ISIG--QPKYAK------DINCNSKNLFHVKEFPLE-------FEN 67 (588)
T ss_dssp CCCSSSSCCEEECTTSCEEEECSSS---------EEEE--EECCCS------CCSSBGGGTEEEEEECCC-------CCC
T ss_pred hHhhccEEEEEECCCCCEEEEEcCC---------ceee--cccccc------eecCCCccEEEEEECCCC-------Ccc
Confidence 3445699999999999999999998 9999 644332 246899999999999999 455
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC-----cEEEEee
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA-----PVYSLCP 485 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~-----~v~~~~~ 485 (1084)
.+.+|+.+....+ .+ .|...|.+++|||||+ .|++++.||+|++||.++ ++..+. |.. .|.+++|
T Consensus 68 ~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svaf 137 (588)
T 2j04_A 68 KLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEW 137 (588)
T ss_dssp TTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEE
T ss_pred eEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEE
Confidence 5555554332211 12 5688999999999999 799999999999999544 667777 765 4999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCc-------eEee----cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 554 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~ 554 (1084)
+| ||++|++|+.||+|++||+..+.. ...+ .+|...|.+++|+||| +++++. ++.|++||+
T Consensus 138 SP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVrlWd~ 209 (588)
T 2j04_A 138 NP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVFSMTV 209 (588)
T ss_dssp CS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEEEECC
T ss_pred cC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEEEEEC
Confidence 55 789999999999999999998753 3444 5567799999999999 666654 677999999
Q ss_pred CCceE---eeeee-ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE--ecCCCE
Q 001403 555 SEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF--NKNGTL 628 (1084)
Q Consensus 555 ~~~~~---~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~~~~ 628 (1084)
.++.. .+.+. +|. ..|.+++|+ ++.+++++ +++|++||+.+++......+| ...+..++| +|++..
T Consensus 210 ~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~~~s~d~~~ 281 (588)
T 2j04_A 210 SASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPLNHEKESTI 281 (588)
T ss_dssp CSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEETTCSSCEE
T ss_pred CCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEeeeCCCCCE
Confidence 88774 24553 555 789999999 68899887 699999999988875444343 446999999 999999
Q ss_pred EEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 629 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
+++++.+|. ++|.... +++ +|++..+++. |+++++|+..
T Consensus 282 La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~~v~lW~~~ 320 (588)
T 2j04_A 282 LLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EKKFKKWSTI 320 (588)
T ss_dssp EEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HHHHHHTTTT
T ss_pred EEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CCEEEEEECC
Confidence 999999999 9999771 223 3677777765 8999999974
Q ss_pred eecCccceeeccCCccccceEEEEEEecCCCeEEEeec
Q 001403 709 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS 746 (1084)
Q Consensus 709 ~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~ 746 (1084)
... +. ...+...|.+++|||||+.+++++.
T Consensus 321 g~~------l~--~~~~~~~I~~va~SPdG~~lA~~~~ 350 (588)
T 2j04_A 321 WNE------FN--NYETTLVIHGISLSPDGYSIAIVYD 350 (588)
T ss_dssp TTS------SS--SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred CCc------ee--eeccceEEEEEEECCCCCEEEEEEe
Confidence 322 11 1123567999999999998887765
No 78
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=2.9e-32 Score=296.71 Aligned_cols=253 Identities=13% Similarity=0.171 Sum_probs=211.7
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.++.+|.+.|.+++|+|||++||+++.| ++|+|||+.+...... ..+.+|...|.+++|+| +|++||+
T Consensus 3 ~~~~~h~~~V~~~~~s~~g~~las~s~D---------~~v~iw~~~~~~~~~~-~~l~gH~~~V~~v~~s~~~~g~~l~s 72 (297)
T 2pm7_B 3 VIANAHNEMIHDAVMDYYGKRMATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILAS 72 (297)
T ss_dssp EECCSCSSCEEEEEECTTSSEEEEEETT---------SCEEEEEBCSSCBCCC-EEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred eeccCCcCceEEEEECCCCCEEEEEeCC---------CEEEEEecCCCCcEEE-EEEccccCCeEEEEecCCCcCCEEEE
Confidence 4678999999999999999999999998 9999999975432221 23789999999999987 4899999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCce--eeEeccCCCcEE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR--TYSFEGHGAPVY 481 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~--~~~~~~h~~~v~ 481 (1084)
|+.|++|+|||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++||++++.. ...+.+|...|.
T Consensus 73 ~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~ 149 (297)
T 2pm7_B 73 CSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN 149 (297)
T ss_dssp EETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE
T ss_pred EcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeecccCccc
Confidence 999999999999987522 22357789999999999998 77 899999999999999987642 466789999999
Q ss_pred EEeecccC-----------CCcEEEEEecCCeEEEEECCCCC----ceEeecCCCCeEEEEEEcCCC---CEEEEEeeCC
Q 001403 482 SLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG---RRLFSCGTSK 543 (1084)
Q Consensus 482 ~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d~---~~l~~~~~~~ 543 (1084)
+++|+|.. ++.+|++++.|++|++||++... ....+..|...|.+++|+|++ ++|++++.
T Consensus 150 ~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~-- 227 (297)
T 2pm7_B 150 SASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQ-- 227 (297)
T ss_dssp EEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET--
T ss_pred eEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEEC--
Confidence 99997752 35799999999999999998766 345678899999999999995 78998886
Q ss_pred CCCeeEEEecCCCce---Eeeee--eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 544 EGESFLVEWNESEGA---IKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~---~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++.|++||+.++. ....+ ..+. ..|.+++|+|++++|++++.||.|++|+..
T Consensus 228 --D~~v~iWd~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 228 --DRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp --TSCEEEEEESSTTSCCEEEESSSSCCS---SCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred --CCcEEEEEeCCCCCccceeeeecccCC---CcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 6679999988743 11222 2333 789999999999999999999999999976
No 79
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-33 Score=320.00 Aligned_cols=291 Identities=12% Similarity=0.049 Sum_probs=226.0
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
...|.+.|.+++|+|||++||+++.| +.|+|||+.+..... ...+.+|...|.+++|+|+|++|++++.|
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d---------~~i~iw~~~~~~~~~-~~~~~~h~~~v~~~~~s~~~~~l~s~s~d 76 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTAT---------NQVELYEQDGNGWKH-ARTFSDHDKIVTCVDWAPKSNRIVTCSQD 76 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSS---------SCBCEEEEETTEEEE-CCCBCCCSSCEEEEEECTTTCCEEEEETT
T ss_pred EecCCCcEEEEEECCCCCEEEEecCC---------CEEEEEEccCCceEE-EEEEecCCceEEEEEEeCCCCEEEEEeCC
Confidence 34566799999999999999999888 999999998763111 12377899999999999999999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc---eeeEecc-CCCcEEEEee
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-HGAPVYSLCP 485 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~---~~~~~~~-h~~~v~~~~~ 485 (1084)
++|++||+.+++.......+.+|...|.+++|+|+++ +|++++.|+.|++||+++++ ....+.+ |...|.+++|
T Consensus 77 ~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~ 154 (377)
T 3dwl_C 77 RNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDW 154 (377)
T ss_dssp SSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEE
T ss_pred CeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEE
Confidence 9999999999873344446778999999999999999 79999999999999999887 4778887 9999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCC------------------CceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSL------------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~------------------~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
++ ++.+|++++.||.|++||+... .....+ .+...|.+++|+|++++|++++. ++
T Consensus 155 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~----d~ 227 (377)
T 3dwl_C 155 HP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGH----DS 227 (377)
T ss_dssp CT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEET----TT
T ss_pred cC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeC----CC
Confidence 65 6789999999999999998532 233344 77788999999999999999986 67
Q ss_pred eEEEecCCCceE----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe--------------------
Q 001403 548 FLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-------------------- 603 (1084)
Q Consensus 548 ~i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~-------------------- 603 (1084)
.|++||+.+++. +..+.+|. ..|.+++|+|++++|++++.++.+ +|+.....
T Consensus 228 ~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (377)
T 3dwl_C 228 SVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTG 303 (377)
T ss_dssp EEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSS
T ss_pred cEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccccccccccccc
Confidence 799999999887 77888887 899999999999999888776666 66554211
Q ss_pred -------------------EEEEEcC-----------CCCCCCcceEEEecC-CC---EEEEEECCCeEEEEEc
Q 001403 604 -------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIKILET 643 (1084)
Q Consensus 604 -------------------~~~~~~~-----------~~~~~~v~~v~~s~~-~~---~l~~~~~dg~i~iwd~ 643 (1084)
....... ..+...|.++++.++ +. .+++++.||.|++||+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 304 NTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp SBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred ccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 0000000 013446888886653 33 6999999999999985
No 80
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.2e-32 Score=307.85 Aligned_cols=300 Identities=17% Similarity=0.231 Sum_probs=246.5
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY 407 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~ 407 (1084)
....+|.+.+...++++++..++++..| +.|+|||+.++...... ..+|...|.+++|+|+|++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~~~l~~~~~d---------~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~~l~~~~ 153 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSNLNVVAVALE---------RNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGSFLSVGL 153 (401)
T ss_dssp EECTTCCCCTTCBCEEECTTSEEEEEET---------TEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSSEEEEEE
T ss_pred eeCCCCcCCceEEEEeecCCCEEEEECC---------CeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCCEEEEEC
Confidence 3345777776655555445667777777 99999999887654332 334889999999999999999999
Q ss_pred CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEeccCCCcEEEEeec
Q 001403 408 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 408 ~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
.||.|++||+.+++.+. .+.+|...|.+++|+ +. ++++++.|+.|++||++ .+..+..+.+|...|.+++|+
T Consensus 154 ~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 154 GNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp TTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 99999999999987655 677999999999994 45 79999999999999999 567788899999999999996
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
+ ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.+..+..+
T Consensus 227 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~~~~~~~~ 303 (401)
T 4aez_A 227 S--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGARVNTVDAG 303 (401)
T ss_dssp T--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCEEEEEECS
T ss_pred C--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCEEEEEeCC
Confidence 5 6789999999999999999998888888889999999999998765554431 122678999999999998888643
Q ss_pred ccccCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
..+.+++|+|+++.+++++ .||.|++||+.+++.........+...|.+++|+|++++|++++.||.|++|++.
T Consensus 304 ----~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~ 379 (401)
T 4aez_A 304 ----SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVY 379 (401)
T ss_dssp ----SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECC
T ss_pred ----CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence 5899999999999999954 8999999999998777665444445579999999999999999999999999999
Q ss_pred CCCeeeec
Q 001403 645 ESNSVDAA 652 (1084)
Q Consensus 645 ~~~~~~~~ 652 (1084)
+++.+...
T Consensus 380 ~~~~~~~~ 387 (401)
T 4aez_A 380 DGDHVKRP 387 (401)
T ss_dssp C-------
T ss_pred CCcccccc
Confidence 88665443
No 81
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=100.00 E-value=3.3e-32 Score=296.30 Aligned_cols=252 Identities=17% Similarity=0.298 Sum_probs=213.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~v 461 (1084)
+.+|...|.+++|+|||++||+|+.|++|+|||+.++.. +....+.+|.++|.+++|+++ ++ +|++|+.|++|++
T Consensus 5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i 81 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI 81 (297)
T ss_dssp CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence 678999999999999999999999999999999975421 223378899999999999864 77 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCC-----
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN----- 532 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d----- 532 (1084)
||+++++ .+..+.+|...|.+++|+|..++.+|++++.||.|++||++.... ...+..|...+.+++|+|+
T Consensus 82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~ 161 (297)
T 2pm7_B 82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 161 (297)
T ss_dssp EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence 9999874 567788999999999998765578999999999999999987642 4566788889999999997
Q ss_pred --------CCEEEEEeeCCCCCeeEEEecCCCce----EeeeeeccccccCceEEEEEcCCC---CEEEEEECCCcEEEE
Q 001403 533 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW 597 (1084)
Q Consensus 533 --------~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iw 597 (1084)
+++|++++. ++.|++||+++++ ....+.+|. ..|.+++|+|++ .+|++++.|++|++|
T Consensus 162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW 234 (297)
T 2pm7_B 162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW 234 (297)
T ss_dssp --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence 578999886 6679999998765 566777887 899999999984 899999999999999
Q ss_pred ECCCCe---EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 598 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 598 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+.++. ....+....+...|.+++|+|++++|++++.|+.|++|+...
T Consensus 235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 998743 222332233345689999999999999999999999999763
No 82
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=100.00 E-value=1.9e-32 Score=312.80 Aligned_cols=303 Identities=10% Similarity=0.064 Sum_probs=257.3
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc---ccceeeeecccccEeEEEeecC----C---CcEEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVIT 452 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d----~---~~l~l~s 452 (1084)
.+.+|...|.+++|+| ++|++|+.||.|++||+.+++. ......+.+|...|.+++|+|+ + + +|++
T Consensus 11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s 86 (397)
T 1sq9_A 11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT 86 (397)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence 4778999999999999 8999999999999999998861 1123367799999999999999 8 8 8999
Q ss_pred EeCCCcEEEEECCCCce-----eeEeccC-----CCcEEEEeeccc--CCCcE-EEEEecCCeEEEEECCC------CCc
Q 001403 453 CGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LGA 513 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~-----~~~~~~h-----~~~v~~~~~~~~--~~~~~-l~s~s~dg~i~iwd~~~------~~~ 513 (1084)
++.|+.|++||+.+++. +..+..| ...|.+++|++. +++.+ |++++.||.|++||+.. ...
T Consensus 87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 166 (397)
T 1sq9_A 87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT 166 (397)
T ss_dssp EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence 99999999999999887 8889888 599999999722 46788 99999999999999988 555
Q ss_pred eE-----ee-------cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec---c---ccccCceEE
Q 001403 514 RV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---L---QLQHNSVSV 575 (1084)
Q Consensus 514 ~~-----~~-------~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~---~---~~~~~~v~~ 575 (1084)
.. .+ ..+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.. | . ..+.+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~---~~i~~ 238 (397)
T 1sq9_A 167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNS---NSIRS 238 (397)
T ss_dssp TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCC---CCEEE
T ss_pred eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccC---Cccce
Confidence 44 55 4467789999999999 8888875 67799999999999999988 6 5 89999
Q ss_pred EEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCC-----------CCCCcceEEEecCCCEEEEEECCCeEEEE
Q 001403 576 VHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKIL 641 (1084)
Q Consensus 576 ~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~~~~l~~~~~dg~i~iw 641 (1084)
++|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.||.|++|
T Consensus 239 i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 318 (397)
T 1sq9_A 239 VKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFW 318 (397)
T ss_dssp EEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEE
T ss_pred EEECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence 9999999999999999 999999999999999887611 23469999999999999999999999999
Q ss_pred EcCCCCeeeecc------cc---------------ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 642 ETPESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 642 d~~~~~~~~~~~------~~---------------~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
|+.+++.+..+. .| ...|.+++|+|++..++.+ ..+++++++++.|+
T Consensus 319 d~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~------------~~~~~~l~s~~~dg 386 (397)
T 1sq9_A 319 DVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDR 386 (397)
T ss_dssp ETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT------------CTTSCEEEEEETTT
T ss_pred EcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc------------ccccceEEEecCCC
Confidence 999999988888 77 8899999998654332221 12337899999999
Q ss_pred cccccccee
Q 001403 701 KSEVEKPLF 709 (1084)
Q Consensus 701 ~i~~w~~~~ 709 (1084)
.+++|++..
T Consensus 387 ~i~iw~~~~ 395 (397)
T 1sq9_A 387 SIRWFREAG 395 (397)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEcCC
Confidence 999999864
No 83
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=2.9e-31 Score=304.75 Aligned_cols=289 Identities=15% Similarity=0.255 Sum_probs=242.7
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
....|+||++ .+||+|. | ++|+|||..++...... .+.+|...|++|+|+|||++||+|+.||+|+||
T Consensus 107 y~~~l~wS~~-n~lAvgl-d---------~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iW 174 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-D---------NSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-T---------TEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred cceeEEECCC-CEEEEEe-C---------CEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCCEEEEEECCCeEEEE
Confidence 4678999986 4888874 5 99999999987654332 256788899999999999999999999999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEE
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFI 494 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l 494 (1084)
|+.+++.++ .+.+|...|.+++++ +. ++++|+.|+.+++||.... ..+..+.+|...+..+.+.+ ++.++
T Consensus 175 d~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~--~g~~l 245 (420)
T 4gga_A 175 DVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHL 245 (420)
T ss_dssp ETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEE
T ss_pred EcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC--CCCee
Confidence 999997665 778999999998875 45 8999999999999998864 45678899999999999954 67899
Q ss_pred EEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCE-EEEEeeCCCCCeeEEEecCCCceEeeeeeccccc
Q 001403 495 FSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 569 (1084)
Q Consensus 495 ~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~ 569 (1084)
++++.||.+++|+....+. ......+...|.+++|+|++.. +++++. ..++.|++||+.+++....+..+.
T Consensus 246 ~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~~~~~~~-- 321 (420)
T 4gga_A 246 ASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLSAVDAHS-- 321 (420)
T ss_dssp EEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEEEEECSS--
T ss_pred eeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccceeecccc--
Confidence 9999999999999987653 4456778889999999997654 444443 237789999999999998887665
Q ss_pred cCceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 570 HNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 570 ~~~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
.+.++.|+|+++.+++++ .|+.|+|||+.+++++..+.+|.. .|.+++|+|||++|++++.|++|++||+.+..
T Consensus 322 --~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~--~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 322 --QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFELD 397 (420)
T ss_dssp --CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSCSS
T ss_pred --ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence 789999999999998865 789999999999999999987654 69999999999999999999999999998765
Q ss_pred eeeecc
Q 001403 648 SVDAAG 653 (1084)
Q Consensus 648 ~~~~~~ 653 (1084)
+.....
T Consensus 398 ~~~~~~ 403 (420)
T 4gga_A 398 PARRRE 403 (420)
T ss_dssp CC----
T ss_pred ccchhh
Confidence 554443
No 84
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=100.00 E-value=5.5e-32 Score=306.02 Aligned_cols=290 Identities=12% Similarity=0.098 Sum_probs=247.0
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
+..|..+|.+++|+|||++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++ ++++++.|+.|++||
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd 80 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT 80 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence 44589999999999999999999999999999999875 113336789999999999999999 899999999999999
Q ss_pred CCCCceeeE--eccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCEEE
Q 001403 464 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 464 ~~~g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
+++++.... +..|...|.+++|++ ++.+|++++.||.|++||++.... ......+...+.+++|+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 158 (372)
T 1k8k_C 81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA 158 (372)
T ss_dssp EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence 998875544 467999999999965 678999999999999999998774 223356678999999999999999
Q ss_pred EEeeCCCCCeeEEEecC------------------CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 538 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~------------------~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+++. ++.|++||+ .+++.+..+..|. ..+.+++|+|++++|++++.||.|++||+
T Consensus 159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 9986 667999995 4678888888777 89999999999999999999999999999
Q ss_pred CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC--CCe-----------------------------
Q 001403 600 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS----------------------------- 648 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~--~~~----------------------------- 648 (1084)
.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ +..
T Consensus 232 ~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (372)
T 1k8k_C 232 DKKMAVATLASETL--PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 308 (372)
T ss_dssp GGTTEEEEEECSSC--CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred CCCceeEEEccCCC--CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence 99999999886643 68999999999988887 899999999987 310
Q ss_pred ---e------eec-cccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC---CccceecccCcccccccee
Q 001403 649 ---V------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 649 ---~------~~~-~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~---~~l~~~~~d~~i~~w~~~~ 709 (1084)
. ..+ .+|...|+++++. .++| .++++++.||.|++|++..
T Consensus 309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~ 361 (372)
T 1k8k_C 309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS 361 (372)
T ss_dssp C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence 0 222 4788888888865 2556 8999999999999999864
No 85
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=100.00 E-value=2e-31 Score=305.54 Aligned_cols=337 Identities=14% Similarity=0.122 Sum_probs=245.4
Q ss_pred ceeeecccCCCCceEEEEcC-CCceeeeecccccCccccccceEEEEEcCCccccceeee----------ecCCCCCeEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHP-VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL----------VRDPGVSVNR 393 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~sp-dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~----------~~~h~~~V~~ 393 (1084)
.....+.+|.+.|.+++|+| +|++||++..| +.|+|||+.+......... ..+|...|.+
T Consensus 34 ~~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 104 (408)
T 4a11_B 34 KDRDVERIHGGGINTLDIEPVEGRYMLSGGSD---------GVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVET 104 (408)
T ss_dssp TTEEECCCCSSCEEEEEECTTTCCEEEEEETT---------SCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEE
T ss_pred cceeeeeccCCcEEEEEEecCCCCEEEEEcCC---------CeEEEEECCCCcccceEeccccccccccccccCCCcEEE
Confidence 45567889999999999999 99999999888 9999999987655433211 1369999999
Q ss_pred EEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC---CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 394 VVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 394 v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
++|+| ++.+|++++.|+.|++||+.+++... .+ .+...+.+++|++. +. ++++++.|+.|++||+.+++.
T Consensus 105 ~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~ 178 (408)
T 4a11_B 105 VQWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSC 178 (408)
T ss_dssp EEECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCC
T ss_pred EEEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCcce
Confidence 99999 88899999999999999999987554 23 47788999999884 44 789999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCc-EEEEEecCCeEEEEECCCCCc-eEee---------------cCCCCeEEEEEEcCC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSAN 532 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~-~l~s~s~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~d 532 (1084)
+..+.+|...|.+++|++ ++. ++++++.||.|++||++.... ...+ ..+...|.+++|+|+
T Consensus 179 ~~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 256 (408)
T 4a11_B 179 SHILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSD 256 (408)
T ss_dssp CEEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTT
T ss_pred eeeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCC
Confidence 999999999999999966 445 699999999999999987652 2222 456778999999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc--ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+++|++++. ++.|++||+.+++....+..+.. ....+........+..+++++.++.|++||+.+++.+..+..
T Consensus 257 ~~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~ 332 (408)
T 4a11_B 257 GLHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKG 332 (408)
T ss_dssp SSEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECC
T ss_pred CCEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeecc
Confidence 999999986 66799999999887655543321 012222233334456777788899999999999999999986
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~ 690 (1084)
+.. .|.+++|+|++++|++++.||.|++|++.+.+.+......... ..+. ....
T Consensus 333 ~~~--~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~ 386 (408)
T 4a11_B 333 HYK--TVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFE 386 (408)
T ss_dssp CSS--CEEEEEEETTTTEEEEEETTSCEEEEEECC---------------------------------------------
T ss_pred CCC--eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccc
Confidence 654 6999999999999999999999999999988766544322211 1111 1234
Q ss_pred CccceecccCccccccce
Q 001403 691 KPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~ 708 (1084)
..+.+.+.++.+++|+..
T Consensus 387 ~~~~~~~~~~~~~~W~~~ 404 (408)
T 4a11_B 387 DAWSSSDEEGGTSAWSHP 404 (408)
T ss_dssp ------------------
T ss_pred eeecccCccCceeecCCc
Confidence 455677788999999864
No 86
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=100.00 E-value=6.8e-32 Score=304.42 Aligned_cols=290 Identities=17% Similarity=0.223 Sum_probs=244.6
Q ss_pred eecCCCCCeEEEEEcCC----CCEEEEEeCCCEEEEEEccCCccccceeeee--cccccEeEEEeecC----CCcEEEEE
Q 001403 383 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT 452 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd----g~~las~~~dg~v~iwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d----~~~l~l~s 452 (1084)
+..+|...|.+++|+|+ ...+++++.++.|++||+.+++.+..+.... .|...|.+++|+|+ +. +|++
T Consensus 13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~ 90 (366)
T 3k26_A 13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV 90 (366)
T ss_dssp EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence 46689999999999994 4566666677799999999887665433322 26678999999999 55 8999
Q ss_pred EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee---cCCCCeEEEEEE
Q 001403 453 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY 529 (1084)
Q Consensus 453 ~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~ 529 (1084)
|+.|+.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+++.+....+ ..+...|.+++|
T Consensus 91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~ 169 (366)
T 3k26_A 91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY 169 (366)
T ss_dssp EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence 999999999999999999999999999999999652 5679999999999999999988887777 678889999999
Q ss_pred cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec----------------------------cccccCceEEEEEcCC
Q 001403 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG----------------------------LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 530 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~----------------------------~~~~~~~v~~~~~s~~ 581 (1084)
+|+++++++++. ++.|++||+.+++....+.. |. ..|.+++|+
T Consensus 170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~-- 240 (366)
T 3k26_A 170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHR---NYVDCVRWL-- 240 (366)
T ss_dssp CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCS---SCCCEEEEE--
T ss_pred CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCc---ceEEEEEEc--
Confidence 999999999986 66799999998776544433 44 889999998
Q ss_pred CCEEEEEECCCcEEEEECCCCeE--------------EEEEcCCCCCCCcceEEEecC--CCEEEEEECCCeEEEEEcCC
Q 001403 582 KDQILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++++++++.||.|++||+.++.. +..+..+.. .|.+++|+|+ +++|++++.||.|++||+.+
T Consensus 241 ~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~ 318 (366)
T 3k26_A 241 GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC--DIWYMRFSMDFWQKMLALGNQVGKLYVWDLEV 318 (366)
T ss_dssp TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC--CSSCCCCEECTTSSEEEEECTTSCEEEEECCS
T ss_pred CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC--cEEEEEEcCCCCCcEEEEEecCCcEEEEECCC
Confidence 67999999999999999987643 666665543 5899999999 99999999999999999998
Q ss_pred CCee----eecccc--ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccce
Q 001403 646 SNSV----DAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 646 ~~~~----~~~~~~--~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
++.. ..+..| ...|.+++|+ |+++++++++.||.+++||+.
T Consensus 319 ~~~~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 319 EDPHKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSGGGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence 7543 366666 6889999887 678889999999999999974
No 87
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-31 Score=289.17 Aligned_cols=281 Identities=15% Similarity=0.174 Sum_probs=246.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
.+.+|...|.+++| |++++|++++.||.|++||+.+++... .+..|...|.+++|+|+++ ++++++.|+.|++|
T Consensus 13 ~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~ 86 (313)
T 3odt_A 13 TLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGV 86 (313)
T ss_dssp EECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEE
T ss_pred HhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEE
Confidence 37889999999999 999999999999999999998876544 6778999999999999999 89999999999999
Q ss_pred ECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEE
Q 001403 463 DAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFS 538 (1084)
Q Consensus 463 d~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~ 538 (1084)
++... +.+..+.+|...|.+++| ++.++++++.||.|++|| .......+..+...+.+++++| +++.+++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~ 160 (313)
T 3odt_A 87 PLFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT 160 (313)
T ss_dssp ETTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred EeeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence 98754 667888999999999998 346999999999999999 5566777888899999999988 9999999
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeec-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
++. ++.|++|| .++....+.. +. ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.. .+
T Consensus 161 ~~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~i 228 (313)
T 3odt_A 161 ASA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHES--FV 228 (313)
T ss_dssp EET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSS--CE
T ss_pred EEC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCc--eE
Confidence 886 66799999 4566666766 55 8899999999987 99999999999999999999999986644 69
Q ss_pred ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec
Q 001403 618 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE 697 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~ 697 (1084)
.+++|+|++ .+++++.||.|++||+.+++....+..+...+.+++++ ++++ +++++
T Consensus 229 ~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~ 284 (313)
T 3odt_A 229 YCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGS 284 (313)
T ss_dssp EEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEE
T ss_pred EEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEe
Confidence 999999999 58899999999999999999999999999999999997 4555 66788
Q ss_pred ccCccccccceeec
Q 001403 698 AENKSEVEKPLFAR 711 (1084)
Q Consensus 698 ~d~~i~~w~~~~~~ 711 (1084)
.|+.+++|++....
T Consensus 285 ~dg~i~iw~~~~~~ 298 (313)
T 3odt_A 285 SDNLVRIFSQEKSR 298 (313)
T ss_dssp TTSCEEEEESCGGG
T ss_pred CCCcEEEEeCCCCc
Confidence 99999999987543
No 88
>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-32 Score=309.19 Aligned_cols=314 Identities=9% Similarity=0.039 Sum_probs=246.1
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
-...|.+|+|||||+++|+++.|++|+ |...++ .+.+|...|.+++|+|+| .++.+.+|+.+
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~- 75 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQ- 75 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCC-
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCC-
Confidence 457999999999999999999999999 766554 346999999999999998 36666666643
Q ss_pred CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCC-----eEEEEEEcCCCCEEEEEee
Q 001403 467 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-----GCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~-----~i~~~~~s~d~~~l~~~~~ 541 (1084)
+..+.++ .|...|.+++|+| +|..|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 76 ~~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~ 149 (588)
T 2j04_A 76 QNGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE 149 (588)
T ss_dssp SSCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET
T ss_pred CceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC
Confidence 2223333 4588999999955 788999999999999999544 334444 443 5999999999999999986
Q ss_pred CCCCCeeEEEecCCCceE-------eeee----eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE---EEE
Q 001403 542 SKEGESFLVEWNESEGAI-------KRTY----QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL---LTT 607 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~-------~~~~----~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~---~~~ 607 (1084)
++.|++||+.++.. +..+ .+|. ..|.+++|+|+| +++++.|++|++||+.++.. ..+
T Consensus 150 ----DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~---~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~t 220 (588)
T 2j04_A 150 ----DGELQFFSIRKNSENTPEFYFESSIRLSDAGSK---DWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRM 220 (588)
T ss_dssp ----TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCC---CCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEE
T ss_pred ----CCEEEEEECCCCccccccceeeeeeeccccccc---ccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceee
Confidence 77799999998853 5665 4444 799999999998 88999999999999988773 345
Q ss_pred Ec-CCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEE--cCCCceeeeeccCceeEecC
Q 001403 608 ID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV--NPISTVTGAGIANGSVSVNE 684 (1084)
Q Consensus 608 ~~-~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~--~p~~~~~~~~~~~~~~~~~~ 684 (1084)
+. .+. ..|.+++|+ |+.+|+++ ++.|++|+..+++......+|...+..+++ +
T Consensus 221 L~~~h~--~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s------------------- 276 (588)
T 2j04_A 221 IQNASR--RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHE------------------- 276 (588)
T ss_dssp EECCCS--SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTC-------------------
T ss_pred eccccc--CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeC-------------------
Confidence 53 333 469999999 68899887 699999999988774444479999999888 5
Q ss_pred CCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCc
Q 001403 685 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 764 (1084)
Q Consensus 685 ~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~ 764 (1084)
|++..+++++.+|+ ++|..+ .++++||+..+++. |+++++|+...+.
T Consensus 277 ---~d~~~La~a~edG~-klw~~d----------------------~~~~spd~~l~a~~--d~~v~lW~~~g~~----- 323 (588)
T 2j04_A 277 ---KESTILLMSNKTSY-KVLLED----------------------ELHVTADNIIAPYL--EKKFKKWSTIWNE----- 323 (588)
T ss_dssp ---SSCEEEEECSSCEE-EEEESS----------------------SEEEECCCSSHHHH--HHHHHHTTTTTTS-----
T ss_pred ---CCCCEEEEEcCCCC-EEEeec----------------------cEEECCCceEEEEc--CCEEEEEECCCCc-----
Confidence 67788899999999 999875 25699999866553 8888877653221
Q ss_pred ccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 765 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
+. .+ .+...|.+++|||||+.+|+++
T Consensus 324 ------------------l~--~~---~~~~~I~~va~SPdG~~lA~~~ 349 (588)
T 2j04_A 324 ------------------FN--NY---ETTLVIHGISLSPDGYSIAIVY 349 (588)
T ss_dssp ------------------SS--SS---CCEEEEEEEEECTTSSEEEEEE
T ss_pred ------------------ee--ee---ccceEEEEEEECCCCCEEEEEE
Confidence 11 01 1355689999999999999886
No 89
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=100.00 E-value=3.9e-30 Score=283.68 Aligned_cols=282 Identities=15% Similarity=0.264 Sum_probs=235.3
Q ss_pred ceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEE
Q 001403 337 PMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 416 (1084)
Q Consensus 337 V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd 416 (1084)
..+|+|||++ +||+|. | ++|+|||+.++...... .+.+|...|.+++|+|+|++||+|+.|++|++||
T Consensus 28 ~~~l~WS~~~-~lAvg~-D---------~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~ 95 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-D---------NSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWD 95 (318)
T ss_dssp CBCEEECTTS-EEEEEE-T---------TEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ceEEEECCCC-EEEEEe-C---------CEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCCEEEEEECCCcEEEee
Confidence 5789999997 788763 5 99999999987654332 2567889999999999999999999999999999
Q ss_pred ccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEeecccCCCcEEE
Q 001403 417 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 417 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~~~~~~~~~~l~ 495 (1084)
+.+++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+ ++.+++
T Consensus 96 ~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~ 166 (318)
T 4ggc_A 96 VQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP--DGRHLA 166 (318)
T ss_dssp TTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT--TSSEEE
T ss_pred cCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC--CCCEEE
Confidence 99997665 67899988877655 456 7999999999999998876 45677899999999999954 668999
Q ss_pred EEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC
Q 001403 496 SISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN 571 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~ 571 (1084)
+++.||.|++||+.+++. ......+...+.+++++|++..++.... +..++.|++||............. .
T Consensus 167 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~~~~----~ 241 (318)
T 4ggc_A 167 SGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAVDAH----S 241 (318)
T ss_dssp EEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEEECS----S
T ss_pred EEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccccce----e
Confidence 999999999999987653 3445667778999999998765543322 133678999999988877665543 5
Q ss_pred ceEEEEEcCCCCEEEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 572 SVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+..+.|+|+++.+++++ .|+.|++||+.+++++..+.+|.. .|.+++|+|++++|++++.||+|+|||+.+.
T Consensus 242 ~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~--~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 242 QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTS--RVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 799999999999988765 799999999999999999987654 6999999999999999999999999998754
No 90
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=100.00 E-value=2.2e-31 Score=299.05 Aligned_cols=292 Identities=13% Similarity=0.165 Sum_probs=240.4
Q ss_pred eecCCCCCeEEEEEcCCCCEEE-EEeC---CCEEEEEEccCCccccceeeeecccccEeEEEeecC---CCcEEEEEEeC
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGD 455 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~la-s~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~l~l~s~~~ 455 (1084)
++.+|...|.+++|+|++..++ +++. |+.|+|||+.+++.... ...+|...|.+++|+|+ +. ++++++.
T Consensus 13 ~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~~ 88 (357)
T 3i2n_A 13 IQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGDF 88 (357)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEET
T ss_pred hccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEecC
Confidence 4677999999999999997665 5554 89999999998875432 23379999999999999 57 7999999
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCcEEEEeecc----cCCCcEEEEEecCCeEEEEECCCCC-ceEeecCCCC----eEE
Q 001403 456 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GCT 525 (1084)
Q Consensus 456 d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~~~~----~~~~~~l~s~s~dg~i~iwd~~~~~-~~~~~~~~~~----~i~ 525 (1084)
|+.|++||+.+++ .+..+.+|...|.++.|.+ ++++.+|++++.||.|++||+.... ....+..+.. .+.
T Consensus 89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~ 168 (357)
T 3i2n_A 89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW 168 (357)
T ss_dssp TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence 9999999999998 8899999999999997643 5678899999999999999999876 5555554443 788
Q ss_pred EEE----EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcC---CCCEEEEEECCCcEEEEE
Q 001403 526 RMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIWD 598 (1084)
Q Consensus 526 ~~~----~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~dg~i~iwd 598 (1084)
+++ |+|+++++++++. ++.|++||+++++.... ..+. ..+.+++|+| ++.++++++.||.|++||
T Consensus 169 ~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d 240 (357)
T 3i2n_A 169 TVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVFD 240 (357)
T ss_dssp EEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEEE
T ss_pred EEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEEe
Confidence 888 7899999999975 67799999999987544 4444 7899999999 999999999999999999
Q ss_pred CCCCeEEEEEc---CCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------Ceeeecccc
Q 001403 599 MNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGVL 655 (1084)
Q Consensus 599 ~~~~~~~~~~~---~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~-------------------~~~~~~~~~ 655 (1084)
+.+++....+. ...+...|.+++|+|+++ ++++++.||.|++||+..+ +.+..+..|
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (357)
T 3i2n_A 241 MRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLS 320 (357)
T ss_dssp EEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECC
T ss_pred CcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccC
Confidence 98766544333 112344699999999998 8999999999999999854 345667778
Q ss_pred ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc-eecccCccccccce
Q 001403 656 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPL 708 (1084)
Q Consensus 656 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~-~~~~d~~i~~w~~~ 708 (1084)
...|.+++|+ |++++++ +++.|+.+++|++.
T Consensus 321 ~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~ 352 (357)
T 3i2n_A 321 TQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVT 352 (357)
T ss_dssp SSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEEC
T ss_pred CCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECC
Confidence 8888888887 6788887 89999999999986
No 91
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=100.00 E-value=2.9e-31 Score=308.40 Aligned_cols=293 Identities=12% Similarity=0.191 Sum_probs=233.9
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc-------cc-eeeeecCCC------------CCe
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM-------LF-KTALVRDPG------------VSV 391 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~-------~~-~~~~~~~h~------------~~V 391 (1084)
.|.+.|.+++|||||++||+|..| +.|+|||+.+... .+ ....+.+|. ..|
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~d---------g~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V 96 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKG---------GRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKI 96 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETT---------SEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCC---------CeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCce
Confidence 457799999999999999999888 9999999987652 11 123477898 889
Q ss_pred EEEEEcCCC--CEEEEEeCCCEEEEEEccCCcccc------------------------------------ce-eeeecc
Q 001403 392 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH 432 (1084)
Q Consensus 392 ~~v~fspdg--~~las~~~dg~v~iwd~~~~~~~~------------------------------------~~-~~l~~h 432 (1084)
.+++|+|++ .+|++++.|++|++||+.+++... .. ....+|
T Consensus 97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 176 (447)
T 3dw8_B 97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH 176 (447)
T ss_dssp CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence 999999998 899999999999999998744210 00 113589
Q ss_pred cccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC-Cceee-------EeccCCCcEEEEeecccCCC-cEEEEEecCCeE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI 503 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~-g~~~~-------~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i 503 (1084)
...|.+++|+|+++ +|++| .|++|++||+++ +..+. .+.+|...|.+++|+| ++ .+|++++.||.|
T Consensus 177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI 251 (447)
T ss_dssp SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence 99999999999999 78888 799999999984 44444 3678999999999965 55 799999999999
Q ss_pred EEEECCCCCc----eEeecCCCC------------eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeeeeecc
Q 001403 504 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL 566 (1084)
Q Consensus 504 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~ 566 (1084)
++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+|
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~~ 326 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQVH 326 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEESC
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeecc
Confidence 9999998776 567777765 899999999999999886 26799999997 8888888887
Q ss_pred ccccC------------ceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----------------------
Q 001403 567 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG----------------------- 611 (1084)
Q Consensus 567 ~~~~~------------~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~----------------------- 611 (1084)
..... .+..++|+|++++|++|+.||.|++||+.+++.+......
T Consensus 327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (447)
T 3dw8_B 327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD 406 (447)
T ss_dssp GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence 62111 1334899999999999999999999999998876432111
Q ss_pred -------CCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 612 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 612 -------~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.....|..++|+|++++||+++.++ +++|...
T Consensus 407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 1123578899999999999998865 7787644
No 92
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=100.00 E-value=5.4e-32 Score=297.37 Aligned_cols=253 Identities=15% Similarity=0.195 Sum_probs=206.1
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC--CCCEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGV 405 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp--dg~~las 405 (1084)
.++.+|.+.|.+++|+|||++||+++.| ++|+|||+.++..... ..+.+|...|.+++|+| ++++||+
T Consensus 7 ~~~~~H~~~V~~v~~s~~g~~lasgs~D---------~~v~lwd~~~~~~~~~-~~l~gH~~~V~~v~~~~~~~~~~l~s 76 (316)
T 3bg1_A 7 TVDTSHEDMIHDAQMDYYGTRLATCSSD---------RSVKIFDVRNGGQILI-ADLRGHEGPVWQVAWAHPMYGNILAS 76 (316)
T ss_dssp -------CCEEEEEECGGGCEEEEEETT---------TEEEEEEEETTEEEEE-EEEECCSSCEEEEEECCGGGSSCEEE
T ss_pred eecccccCeEEEeeEcCCCCEEEEEeCC---------CeEEEEEecCCCcEEE-EEEcCCCccEEEEEeCCCCCCCEEEE
Confidence 4567999999999999999999999998 9999999987643222 23789999999999986 4899999
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCce---eeEeccCCCcE
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPV 480 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~---~~~~~~h~~~v 480 (1084)
|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++|+.|++|++||+.++.. ...+.+|...|
T Consensus 77 ~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v 153 (316)
T 3bg1_A 77 CSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGC 153 (316)
T ss_dssp EETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCB
T ss_pred EECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeeccccCCc
Confidence 999999999999987422 23367789999999999998 66 799999999999999987632 45567899999
Q ss_pred EEEeecccC---------------CCcEEEEEecCCeEEEEECCCCC---ceEeecCCCCeEEEEEEcCCC----CEEEE
Q 001403 481 YSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG----RRLFS 538 (1084)
Q Consensus 481 ~~~~~~~~~---------------~~~~l~s~s~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d~----~~l~~ 538 (1084)
.+++|+|.. ++.+|++++.|++|++||++... ....+..|...|.+++|+|++ ++|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las 233 (316)
T 3bg1_A 154 NAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIAS 233 (316)
T ss_dssp CCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEE
T ss_pred ceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEE
Confidence 999997642 14689999999999999997553 455677888999999999987 88999
Q ss_pred EeeCCCCCeeEEEecCCCc---e-EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 539 CGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~---~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
++. ++.|++||+.+. . ....+..|. ..|.+++|+|++++|++++.||+|++|+..
T Consensus 234 ~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 234 CSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 886 778999998763 1 123344555 789999999999999999999999999975
No 93
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=100.00 E-value=8.9e-31 Score=300.72 Aligned_cols=281 Identities=19% Similarity=0.234 Sum_probs=242.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
....|+||++ ++||+|. |++|+|||+.+|+..+.+ .+.+|...|++|+|+|+|+ +|++|+.|++|++||+++++.
T Consensus 107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~~-~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~ 181 (420)
T 4gga_A 107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR 181 (420)
T ss_dssp TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence 4677999986 4787775 899999999999865532 4568888999999999999 899999999999999999999
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
+..+.+|...+.++++ ++.++++++.|+.+++||...... ...+..+...+..+.++|+++++++++. ++.
T Consensus 182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~ 253 (420)
T 4gga_A 182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL 253 (420)
T ss_dssp EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence 9999999999999987 346999999999999999987554 4567889999999999999999999986 667
Q ss_pred EEEecCCCceE----eeeeeccccccCceEEEEEcCCCCE-EEE--EECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 549 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQ-ILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 549 i~~wd~~~~~~----~~~~~~~~~~~~~v~~~~~s~~~~~-l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+.+|+..+++. +.....|. ..|.+++|+|++.. +++ |+.|++|++||+.+++....+..+.. +.++.
T Consensus 254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~---v~~~~ 327 (420)
T 4gga_A 254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQ---VCSIL 327 (420)
T ss_dssp EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSC---EEEEE
T ss_pred ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccc---eeeee
Confidence 99999987653 34445555 88999999997654 444 34799999999999999999876543 88999
Q ss_pred EecCCCEEEEEE--CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceeccc
Q 001403 622 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE 699 (1084)
Q Consensus 622 ~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d 699 (1084)
|+|+++.+++++ .|+.|+|||+.+++.+..+.+|...|.+++|+ |+|+++++++.|
T Consensus 328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D 385 (420)
T 4gga_A 328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD 385 (420)
T ss_dssp EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence 999999998876 68999999999999999999999999999997 678899999999
Q ss_pred Cccccccceeec
Q 001403 700 NKSEVEKPLFAR 711 (1084)
Q Consensus 700 ~~i~~w~~~~~~ 711 (1084)
++|++|++....
T Consensus 386 ~tvriWdv~~~~ 397 (420)
T 4gga_A 386 ETLRLWRCFELD 397 (420)
T ss_dssp TEEEEECCSCSS
T ss_pred CeEEEEECCCCC
Confidence 999999986443
No 94
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=100.00 E-value=4.1e-31 Score=294.98 Aligned_cols=286 Identities=9% Similarity=0.074 Sum_probs=243.5
Q ss_pred eecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCC-EEEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLGVA 406 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~-~las~ 406 (1084)
....+|.+.|.+++|+|||++||++..| +.|+|||+.+.........+.+|...|.+++|+|+++ +|+++
T Consensus 5 ~~~~~h~~~v~~~~~s~~~~~l~~~~~d---------~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~ 75 (342)
T 1yfq_A 5 QIEQAPKDYISDIKIIPSKSLLLITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75 (342)
T ss_dssp ECSSCCSSCEEEEEEEGGGTEEEEEETT---------SEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEE
T ss_pred ecccCCCCcEEEEEEcCCCCEEEEEcCC---------CeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEE
Confidence 3456899999999999999999999888 9999999987663222233557999999999999999 99999
Q ss_pred eCCCEEEEEEc-cCCccccceeeeec--ccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC---------CceeeEec
Q 001403 407 YSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------GSRTYSFE 474 (1084)
Q Consensus 407 ~~dg~v~iwd~-~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~---------g~~~~~~~ 474 (1084)
+.||.|++||+ .+++. ..+.+ |...|.+++|+| +. ++++++.|+.|++||+++ ++++..+.
T Consensus 76 ~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 148 (342)
T 1yfq_A 76 TVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK 148 (342)
T ss_dssp ETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS
T ss_pred cCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCeeeEEe
Confidence 99999999999 88753 35778 999999999999 77 899999999999999988 77777777
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCc--eEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCCCeeEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~~~~i~ 550 (1084)
|...|.+++|++ ++ +++++.||.|++||++. ... ......+...+.+++|+| +++++++++. ++.|.
T Consensus 149 -~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----dg~i~ 219 (342)
T 1yfq_A 149 -VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVA 219 (342)
T ss_dssp -SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEE
T ss_pred -eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----CCcEE
Confidence 899999999954 43 99999999999999988 443 334556677899999999 9999999986 67799
Q ss_pred EecCCCc------eEeeeeecccc------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCc
Q 001403 551 EWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN 617 (1084)
Q Consensus 551 ~wd~~~~------~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v 617 (1084)
+|++..+ +....+..|.. +...|.+++|+|++++|++++.||.|++||+.+++.+..+..+ .. .|
T Consensus 220 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~--~v 297 (342)
T 1yfq_A 220 VEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNED--SV 297 (342)
T ss_dssp EEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSS--EE
T ss_pred EEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCC--Cc
Confidence 9999887 77778887751 1248999999999999999999999999999999999988765 43 58
Q ss_pred ceEEEecCCCEEEEEECCCe-EEEEE
Q 001403 618 PRICFNKNGTLLAVIANENR-IKILE 642 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~dg~-i~iwd 642 (1084)
.+++ |++++|++++.||. .+.+.
T Consensus 298 ~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 298 VKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred eEec--CCCCeEEEEecCCccccccc
Confidence 8888 99999999999998 44444
No 95
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-32 Score=310.45 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=198.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCC--ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~--~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
|...|.+++|+|||++||+++.|+.|+|||+.++ +.+. .+.+|...|.+++|+|+++ +|++++.|++|++||+
T Consensus 10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd~ 84 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYEK 84 (377)
T ss_dssp CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC--
T ss_pred CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEEc
Confidence 6789999999999999999999999999999987 4444 6779999999999999999 7999999999999999
Q ss_pred CCCc---eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecC-CCCeEEEEEEcCCCCEEE
Q 001403 465 VTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 465 ~~g~---~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~d~~~l~ 537 (1084)
.++. ....+.+|...|.+++|++ ++.+|++++.||.|++||++..+. ...+.. +...|.+++|+|++++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~ 162 (377)
T 3dwl_C 85 RPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLA 162 (377)
T ss_dssp ----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEE
T ss_pred CCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEE
Confidence 9987 6778889999999999965 678999999999999999998763 556666 888999999999999999
Q ss_pred EEeeCCCCCeeEEEecCC------------------CceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 538 SCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~------------------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
+++. ++.|++||+. .++.+..+ +|. ..|.+++|+|++++|++++.||.|++||+
T Consensus 163 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd~ 234 (377)
T 3dwl_C 163 AGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAYP 234 (377)
T ss_dssp EEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CEE
T ss_pred EEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence 9986 6679999985 35566666 555 88999999999999999999999999999
Q ss_pred CCCeE----EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 600 NKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 600 ~~~~~----~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
.+++. +..+..+.. .|.+++|+|++++|++++.++.+ +|+..
T Consensus 235 ~~~~~~~~~~~~~~~~~~--~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 235 SAPEQPPRALITVKLSQL--PLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp CSTTSCEEECCCEECSSS--CEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCcceeeEeecCCCC--ceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 99887 566665543 68999999999999998877666 66654
No 96
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=99.98 E-value=1.8e-31 Score=293.28 Aligned_cols=251 Identities=18% Similarity=0.320 Sum_probs=205.5
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
++.+|...|++++|+|+|++||+|+.|++|+|||+.+++.. ....+.+|.+.|.+++|+++ ++ +|++|+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 36789999999999999999999999999999999887531 23368899999999999864 67 799999999999
Q ss_pred EEECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc---eEeecCCCCeEEEEEEcCC---
Q 001403 461 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN--- 532 (1084)
Q Consensus 461 vwd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d--- 532 (1084)
+||++++. .+..+.+|...|.+++|+|..++.+|++++.||.|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 99999874 567888999999999998876678999999999999999987643 2345567778999999998
Q ss_pred --------------CCEEEEEeeCCCCCeeEEEecCCCc---eEeeeeeccccccCceEEEEEcCCC----CEEEEEECC
Q 001403 533 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD 591 (1084)
Q Consensus 533 --------------~~~l~~~~~~~~~~~~i~~wd~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~~~d 591 (1084)
+++|++++. ++.|++||+.++ +.+..+.+|. ..|.+++|+|++ .+|++++.|
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D 237 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD 237 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence 468888875 677999999755 4666777777 899999999986 889999999
Q ss_pred CcEEEEECCCC---e-EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 592 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 592 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
|+|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+...
T Consensus 238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 99999998762 1 11222223 34689999999999999999999999999763
No 97
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.98 E-value=1.9e-30 Score=292.66 Aligned_cols=296 Identities=16% Similarity=0.200 Sum_probs=242.4
Q ss_pred CccceeeecccCCCCceEEEEcCC---CceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
.|...++.+.+|.+.|.+++|+|+ |++||++..| +.|+|||+.+...... ..+.+|...|.+++|+|
T Consensus 27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~d---------g~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~ 96 (368)
T 3mmy_A 27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWA---------NDVRCWEVQDSGQTIP-KAQQMHTGPVLDVCWSD 96 (368)
T ss_dssp CTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETT---------SEEEEEEECTTSCEEE-EEEEECSSCEEEEEECT
T ss_pred CCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCC---------CcEEEEEcCCCCceeE-EEeccccCCEEEEEECc
Confidence 455677889999999999999999 6999999888 9999999987433332 23677999999999999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe--ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 476 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~--s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h 476 (1084)
++++|++++.||.|++||+.+++... +.+|...|.+++| ++++. ++++++.|+.|++||+++++.+..+..|
T Consensus 97 ~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~~~~~~~~ 170 (368)
T 3mmy_A 97 DGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNPMMVLQLP 170 (368)
T ss_dssp TSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSCSEEEECS
T ss_pred CCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcEEEEEecC
Confidence 99999999999999999999986543 5679999999999 88888 8999999999999999999999999876
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCE----EEEEeeCCCCCeeEE
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGTSKEGESFLV 550 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~----l~~~~~~~~~~~~i~ 550 (1084)
. .+.++.+.. ..+++++.++.+++|+++......... .......++++.++... +++++. ++.|+
T Consensus 171 ~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----dg~i~ 241 (368)
T 3mmy_A 171 E-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI----EGRVA 241 (368)
T ss_dssp S-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET----TSEEE
T ss_pred C-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC----CCcEE
Confidence 5 566666532 478999999999999998766544332 23345666666665544 777775 77799
Q ss_pred EecCCCc---eEeeeeeccccc---------cCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 551 EWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 551 ~wd~~~~---~~~~~~~~~~~~---------~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
+||+... .....+.+|... ...|.+++|+|++++|++++.||.|++||+.+++.+..+..+.. .|.
T Consensus 242 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~ 319 (368)
T 3mmy_A 242 IHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQ--PIS 319 (368)
T ss_dssp EEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--CEE
T ss_pred EEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCC--Cce
Confidence 9999987 556677776610 11699999999999999999999999999999999998886544 699
Q ss_pred eEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 619 RICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+++|+|++++|++++.|+..+.|+..
T Consensus 320 ~~~~s~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 320 ACCFNHNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp EEEECTTSSCEEEEECCCSTTCGGGC
T ss_pred EEEECCCCCeEEEEeccccccccccc
Confidence 99999999999999998755554433
No 98
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.98 E-value=3.8e-30 Score=297.11 Aligned_cols=278 Identities=22% Similarity=0.341 Sum_probs=239.7
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
..+|...|.+++| ||++||+|..| ++|+|||+.++.... .+.+|...|.+++| ++++|++|+.|
T Consensus 129 ~~~~~~~v~~~~~--d~~~l~~g~~d---------g~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~~l~sg~~d 192 (435)
T 1p22_A 129 RSETSKGVYCLQY--DDQKIVSGLRD---------NTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DERVIITGSSD 192 (435)
T ss_dssp CCSSCCCEEEEEC--CSSEEEEEESS---------SCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSSEEEEEETT
T ss_pred ccCCCCcEEEEEE--CCCEEEEEeCC---------CeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCCEEEEEcCC
Confidence 3467777888877 89999999888 999999998876543 37789999999999 78999999999
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee---eEeccCCCcEEEEeec
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~---~~~~~h~~~v~~~~~~ 486 (1084)
|+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++||+.++... ..+.+|...|.++++
T Consensus 193 g~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~- 264 (435)
T 1p22_A 193 STVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF- 264 (435)
T ss_dssp SCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE-
T ss_pred CeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe-
Confidence 999999999997655 6789999999999974 4 7999999999999999988766 677899999999998
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
++.++++++.||.|++||+.+.+....+..+...+.++++ +++++++++. ++.|++||+.+++.+..+.+|
T Consensus 265 ---~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~~~~~~h 335 (435)
T 1p22_A 265 ---DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLRVLEGH 335 (435)
T ss_dssp ---ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEEEEECCC
T ss_pred ---CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEEEEEeCC
Confidence 4579999999999999999999999999999999999998 5789999886 667999999999999999988
Q ss_pred ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe---------EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
. ..|.+++| ++.++++|+.||.|++||+.++. .+..+..+.. .|.+++| ++.+|++++.||.
T Consensus 336 ~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~--~v~~l~~--~~~~l~s~s~Dg~ 406 (435)
T 1p22_A 336 E---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSG--RVFRLQF--DEFQIVSSSHDDT 406 (435)
T ss_dssp S---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSS--CCCCEEE--CSSCEEECCSSSE
T ss_pred c---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCC--CeEEEEe--CCCEEEEEeCCCE
Confidence 8 88999998 78899999999999999997766 7777776644 6899999 7889999999999
Q ss_pred EEEEEcCCCCee
Q 001403 638 IKILETPESNSV 649 (1084)
Q Consensus 638 i~iwd~~~~~~~ 649 (1084)
|++||+.+....
T Consensus 407 i~iwd~~~~~~~ 418 (435)
T 1p22_A 407 ILIWDFLNDPAA 418 (435)
T ss_dssp EEEEC-------
T ss_pred EEEEECCCCCCc
Confidence 999999876443
No 99
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=99.97 E-value=3.9e-30 Score=293.52 Aligned_cols=282 Identities=15% Similarity=0.154 Sum_probs=241.1
Q ss_pred CCCCC--eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 386 DPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 386 ~h~~~--V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+|... +.+++|++ ..+++++.|+.|++||+.+++... .+. .|...|.+++|+|+++ +|++|+.||.|++|
T Consensus 89 ~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~---~~~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~iw 161 (401)
T 4aez_A 89 GIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSA---LAETDESTYVASVKWSHDGS--FLSVGLGNGLVDIY 161 (401)
T ss_dssp TCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEE---EEECCTTCCEEEEEECTTSS--EEEEEETTSCEEEE
T ss_pred CCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeE---eeecCCCCCEEEEEECCCCC--EEEEECCCCeEEEE
Confidence 45444 44566664 668889999999999999987654 233 3889999999999999 89999999999999
Q ss_pred ECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 463 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 463 d~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
|+.+++.+..+.+|...|.+++| ++.++++++.||.|++||++. ......+..+...|.+++|+|+++++++++.
T Consensus 162 d~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~ 237 (401)
T 4aez_A 162 DVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGN 237 (401)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred ECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeC
Confidence 99999999999999999999999 336999999999999999994 5556778889999999999999999999986
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE-EEEEE--CCCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-ILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~-l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
++.|++||+.+++.+..+..|. ..|.+++|+|++.. +++++ .|+.|++||+.+++.+..+..+. .+.
T Consensus 238 ----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~~---~v~ 307 (401)
T 4aez_A 238 ----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAGS---QVT 307 (401)
T ss_dssp ----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECSS---CEE
T ss_pred ----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCCC---cEE
Confidence 6679999999999998888887 89999999998754 45554 69999999999999999887443 489
Q ss_pred eEEEecCCCEEEEEE--CCCeEEEEEcCCCCeee--eccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 619 RICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~--~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
+++|+|+++++++++ .||.|++|++.++.... .+.+|...|.+++++ |++.+++
T Consensus 308 ~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~ 365 (401)
T 4aez_A 308 SLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRILS 365 (401)
T ss_dssp EEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEEE
T ss_pred EEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEEE
Confidence 999999999999954 89999999999865444 356888899988887 6788899
Q ss_pred eecccCccccccceee
Q 001403 695 SVEAENKSEVEKPLFA 710 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~ 710 (1084)
+++.|+.+++|++..+
T Consensus 366 s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 366 TAASDENLKFWRVYDG 381 (401)
T ss_dssp EECTTSEEEEEECCC-
T ss_pred EEeCCCcEEEEECCCC
Confidence 9999999999998744
No 100
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=99.97 E-value=1.3e-29 Score=279.55 Aligned_cols=277 Identities=19% Similarity=0.256 Sum_probs=236.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
..+|+||+++ +||+|. |++|+|||+.+++.++.+ .+.+|...|++++|+|+++ ++++|+.|++|++||+++++.+
T Consensus 28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~ 102 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL 102 (318)
T ss_dssp CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence 5679999986 777764 899999999999876533 4568889999999999999 8999999999999999999999
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeE
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 549 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i 549 (1084)
..+.+|...+.++.+ ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++. ++.|
T Consensus 103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i 174 (318)
T 4ggc_A 103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV 174 (318)
T ss_dssp EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence 999999999988766 346899999999999999887654 4567888889999999999999999986 6679
Q ss_pred EEecCCCceEe----eeeeccccccCceEEEEEcCCCCEEE---EEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEE
Q 001403 550 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF 622 (1084)
Q Consensus 550 ~~wd~~~~~~~----~~~~~~~~~~~~v~~~~~s~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 622 (1084)
++||+.+++.. .....+. ..|..+.++|++..++ +++.++.|++||.............. .+..+.|
T Consensus 175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~---~v~~~~~ 248 (318)
T 4ggc_A 175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSILW 248 (318)
T ss_dssp EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSS---CEEEEEE
T ss_pred eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccccee---eeeeeee
Confidence 99999887543 2233333 7899999999876443 45688999999999988877765443 4889999
Q ss_pred ecCCCEEEEEE--CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccC
Q 001403 623 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 700 (1084)
Q Consensus 623 s~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~ 700 (1084)
+|++..+++++ .|+.|++||+.+++.+..+.+|.+.|++++|+ |+++++++++.|+
T Consensus 249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~ 306 (318)
T 4ggc_A 249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE 306 (318)
T ss_dssp ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence 99999888765 68999999999999999999999999999997 6788999999999
Q ss_pred ccccccce
Q 001403 701 KSEVEKPL 708 (1084)
Q Consensus 701 ~i~~w~~~ 708 (1084)
+|++|++.
T Consensus 307 ~v~iWd~~ 314 (318)
T 4ggc_A 307 TLRLWRCF 314 (318)
T ss_dssp EEEEECCS
T ss_pred eEEEEECC
Confidence 99999975
No 101
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=3.6e-30 Score=288.03 Aligned_cols=306 Identities=11% Similarity=0.122 Sum_probs=228.5
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccc-eeeeecCCCCCeEEEEEcC--CCCEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLF-KTALVRDPGVSVNRVVWSP--DGSLL 403 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~-~~~~~~~h~~~V~~v~fsp--dg~~l 403 (1084)
.+.+.+|.+.|.+++|+|||++||++..| +.|+|||+.+..... ....+.+|...|.+++|+| |+++|
T Consensus 4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l 74 (351)
T 3f3f_A 4 QPFDSGHDDLVHDVVYDFYGRHVATCSSD---------QHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRII 74 (351)
T ss_dssp CCEECCCSSCEEEEEECSSSSEEEEEETT---------SEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEE
T ss_pred cccCcccccceeEEEEcCCCCEEEEeeCC---------CeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEE
Confidence 45678999999999999999999999888 999999998754332 2234678999999999999 69999
Q ss_pred EEEeCCCEEEEEEccCCccc------cceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCceeeEec-
Q 001403 404 GVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSRTYSFE- 474 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~------~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~- 474 (1084)
++++.||.|++||+.+++.. .....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.+++.+..+.
T Consensus 75 ~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~~~~~ 152 (351)
T 3f3f_A 75 ASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLRSWTL 152 (351)
T ss_dssp EEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTTCCEE
T ss_pred EEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhccccc
Confidence 99999999999999987421 234467799999999999999 88 89999999999999999887665443
Q ss_pred ------------cCCCcEEEEeeccc-CCCcEEEEEecCCeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCC----CE
Q 001403 475 ------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RR 535 (1084)
Q Consensus 475 ------------~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~----~~ 535 (1084)
+|...+.+++|+|. .++..+++++.++.+.+|+...... ...+..+...|.+++|+|++ ++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~ 232 (351)
T 3f3f_A 153 TSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQL 232 (351)
T ss_dssp EEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEE
T ss_pred cccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceE
Confidence 68889999999764 1257999999999998888777665 55667788899999999998 78
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE----ECCCcEEEEECCCCeEEEEEcCC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
|++++. ++.|++||+.++.......... ........++....+..+ .....+.+|+....+.+..+..|
T Consensus 233 l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h 305 (351)
T 3f3f_A 233 IATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDH 305 (351)
T ss_dssp EEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEEEEECTT
T ss_pred EEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEEEEEecc
Confidence 998876 6679999998775544433322 233333344443333333 34455667777777788888765
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeec
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA 652 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 652 (1084)
.. .|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus 306 ~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~ 344 (351)
T 3f3f_A 306 NG--EVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM 344 (351)
T ss_dssp SS--CEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred cc--cEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence 44 6999999999999999999999999999988665544
No 102
>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}
Probab=99.97 E-value=2.8e-30 Score=300.06 Aligned_cols=253 Identities=14% Similarity=0.227 Sum_probs=207.7
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc--------ccceeeeeccc------------ccEeEEEeecCC-
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC- 445 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~--------~~~~~~l~~h~------------~~V~~l~~s~d~- 445 (1084)
|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~ 106 (447)
T 3dw8_B 27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN 106 (447)
T ss_dssp GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence 678999999999999999999999999999998752 11244678998 889999999998
Q ss_pred -CcEEEEEEeCCCcEEEEECCCCcee---------------------------------------eE-eccCCCcEEEEe
Q 001403 446 -KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSLC 484 (1084)
Q Consensus 446 -~~l~l~s~~~d~~i~vwd~~~g~~~---------------------------------------~~-~~~h~~~v~~~~ 484 (1084)
. .+++++.|++|++||+.++... .. ..+|...|.+++
T Consensus 107 ~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~ 184 (447)
T 3dw8_B 107 AA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSIS 184 (447)
T ss_dssp SS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEE
T ss_pred cc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEE
Confidence 5 7999999999999998765432 12 367999999999
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEe--------ecCCCCeEEEEEEcCCC-CEEEEEeeCCCCCeeEEEecCC
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNES 555 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~d~-~~l~~~~~~~~~~~~i~~wd~~ 555 (1084)
|++ ++.+|+++ .||.|++||++....... +..+...|.+++|+|++ +++++++. ++.|++||++
T Consensus 185 ~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~~ 257 (447)
T 3dw8_B 185 INS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDMR 257 (447)
T ss_dssp ECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEETT
T ss_pred EcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEECc
Confidence 965 67899998 799999999985443332 45677899999999999 99999986 6679999999
Q ss_pred CceE----eeeeecccc---------ccCceEEEEEcCCCCEEEEEECCCcEEEEECCC-CeEEEEEcCCCCCCC-----
Q 001403 556 EGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----- 616 (1084)
Q Consensus 556 ~~~~----~~~~~~~~~---------~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----- 616 (1084)
+++. +..+..+.. +...|.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~ 336 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCSL 336 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHHH
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeecccccccccccc
Confidence 9886 677777660 0128999999999999999999 9999999997 888888876643111
Q ss_pred --------cceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 617 --------NPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 617 --------v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
+..++|+|++++|++++.||.|++||+.+++.+
T Consensus 337 ~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 337 YENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp HHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred ccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 234999999999999999999999999988665
No 103
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=99.97 E-value=1.1e-29 Score=293.11 Aligned_cols=274 Identities=16% Similarity=0.243 Sum_probs=239.0
Q ss_pred cCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 385 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 385 ~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ ++++|+.||+|++||+
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 347778988877 79999999999999999999987655 67899999999999 677 8999999999999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce---EeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
.+++.+..+.+|...|.+++|+ +..+++++.||.|++||+.+.... ..+..+...|.+++| +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 9999999999999999999984 359999999999999999987765 567788889999998 7889999886
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
++.|++||+.+++.+..+.+|. ..+.++.| +++.+++|+.||.|++||+.+++.+..+..+.. .|.+++
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~~~ 343 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIR 343 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEE
T ss_pred ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcC--cEEEEE
Confidence 6779999999999999999888 88999988 468999999999999999999999999986644 588888
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCC---------eeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP 692 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~ 692 (1084)
| ++.++++++.||.|++||+.++. .+..+.+|...|.++++. +..
T Consensus 344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~ 397 (435)
T 1p22_A 344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ 397 (435)
T ss_dssp C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence 8 78999999999999999997665 677788888888777663 677
Q ss_pred cceecccCccccccceee
Q 001403 693 EISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 693 l~~~~~d~~i~~w~~~~~ 710 (1084)
+++++.||++++|++...
T Consensus 398 l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 398 IVSSSHDDTILIWDFLND 415 (435)
T ss_dssp EEECCSSSEEEEEC----
T ss_pred EEEEeCCCEEEEEECCCC
Confidence 999999999999998754
No 104
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.97 E-value=7.9e-30 Score=291.28 Aligned_cols=295 Identities=14% Similarity=0.187 Sum_probs=239.1
Q ss_pred CCceEEEEcCCCceeee-ecccccCccccccceEEEEEcCCcccc-ceeeeecCCCCCeEEEEEcC-CCCEEEEEeCCCE
Q 001403 335 SSPMSMDFHPVQHTLLL-GLWDVNSGQKLFIRNFKVWDIGACSML-FKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI 411 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las-~~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~~~~~~h~~~V~~v~fsp-dg~~las~~~dg~ 411 (1084)
.....++++|+...++. +..| |.|+||++.+.... .....+.+|...|.+++|+| ++++||+|+.||+
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~---------g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~ 105 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGG---------GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCT 105 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSS---------CCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSE
T ss_pred cCCCcEEECCCeEEEEEEEcCC---------CEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCe
Confidence 35667999999876554 5555 99999999654332 23334788999999999999 9999999999999
Q ss_pred EEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe--ccCCCcEEEEee
Q 001403 412 VQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCP 485 (1084)
Q Consensus 412 v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--~~h~~~v~~~~~ 485 (1084)
|+|||+.++... .....+.+|...|.+++|+|++.. ++++++.|++|++||+.+++.+..+ .+|...|.+++|
T Consensus 106 v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~ 184 (402)
T 2aq5_A 106 VMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDW 184 (402)
T ss_dssp EEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEE
T ss_pred EEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEE
Confidence 999999987432 233478899999999999999843 7999999999999999999999999 889999999999
Q ss_pred cccCCCcEEEEEecCCeEEEEECCCCCceEee-cCCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE-eee
Q 001403 486 HAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRT 562 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~-~~~ 562 (1084)
++ ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.+++. +..
T Consensus 185 ~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~~~~~~ 261 (402)
T 2aq5_A 185 SR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLEEPLSL 261 (402)
T ss_dssp CT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCSSCSEE
T ss_pred CC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccccCCceE
Confidence 65 6789999999999999999998887777 566654 899999999999988731 12378899999998664 323
Q ss_pred ee-ccccccCceEEEEEcCCCCEEEE-EECCCcEEEEECCCCeE-EEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEE
Q 001403 563 YQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK 639 (1084)
Q Consensus 563 ~~-~~~~~~~~v~~~~~s~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~ 639 (1084)
.. .+. ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++ .++.++
T Consensus 262 ~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~ 336 (402)
T 2aq5_A 262 QELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIAR 336 (402)
T ss_dssp EECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEE
T ss_pred EeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEE
Confidence 32 233 67999999999999975 55799999999998873 444444334456999999999988774 567999
Q ss_pred EEEcCCCC
Q 001403 640 ILETPESN 647 (1084)
Q Consensus 640 iwd~~~~~ 647 (1084)
+|++.++.
T Consensus 337 ~~~l~~~~ 344 (402)
T 2aq5_A 337 FYKLHERK 344 (402)
T ss_dssp EEEEETTE
T ss_pred EEEcCCCc
Confidence 99998763
No 105
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.8e-29 Score=286.04 Aligned_cols=260 Identities=13% Similarity=0.161 Sum_probs=216.1
Q ss_pred eeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEE
Q 001403 326 VAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLL 403 (1084)
Q Consensus 326 ~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~l 403 (1084)
.+.++.+|.+.|.+++|+|||++||++..| +.|+|||+........ ..+.+|...|.+++|+|+ +++|
T Consensus 3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d---------g~i~iw~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~~l 72 (379)
T 3jrp_A 3 MVVIANAHNELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTIL 72 (379)
T ss_dssp --CCEEECCCCEEEEEECSSSSEEEEEETT---------SCEEEEEEETTEEEEE-EEECCCSSCEEEEEECCGGGCSEE
T ss_pred ccEEecCCcccEEEEEEcCCCCEEEEEECC---------CcEEEEecCCCcceee-eEecCCCCcEEEEEeCCCCCCCEE
Confidence 457789999999999999999999999888 9999999974333222 237789999999999987 9999
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCc
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAP 479 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~ 479 (1084)
++++.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++||+.++. ....+.+|...
T Consensus 73 ~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 73 ASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp EEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred EEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCCCCc
Confidence 99999999999999998621 23367789999999999999 88 89999999999999999874 34567789999
Q ss_pred EEEEeecccC-----------CCcEEEEEecCCeEEEEECCCCCce----EeecCCCCeEEEEEEcCC---CCEEEEEee
Q 001403 480 VYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSAN---GRRLFSCGT 541 (1084)
Q Consensus 480 v~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~d---~~~l~~~~~ 541 (1084)
|.+++|++.. ++.++++++.||.|++||+...... ..+..|...|.+++|+|+ +++|++++.
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~ 229 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ 229 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEET
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeC
Confidence 9999997632 5789999999999999999876543 456778889999999999 899999886
Q ss_pred CCCCCeeEEEecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 542 SKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.++.. ...+.. ..+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus 230 ----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 230 ----DRTCIIWTQDNEQGPWKKTLLKE-EKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp ----TSCEEEEEESSTTSCCEEEESSS-SCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred ----CCEEEEEeCCCCCccceeeeecc-ccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 66799999998641 122221 1133789999999999999999999999999987543
No 106
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=99.97 E-value=1.7e-29 Score=281.75 Aligned_cols=285 Identities=10% Similarity=-0.001 Sum_probs=238.9
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+|...|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. ++++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 4579999999999999999999999999999999988632233356689999999999999872 378899999999999
Q ss_pred C-CCCceeeEecc--CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC---------CCceEeecCCCCeEEEEEEcC
Q 001403 464 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA 531 (1084)
Q Consensus 464 ~-~~g~~~~~~~~--h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~ 531 (1084)
+ .+++. ..+.+ |...|.+++|++ +.++++++.||.|++||+++ .+....+. +...+.+++|+|
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~ 160 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS 160 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence 9 77755 77888 999999999976 57999999999999999987 55555555 677899999999
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCC-----
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV----- 602 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~----- 602 (1084)
++ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++...
T Consensus 161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~ 231 (342)
T 1yfq_A 161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN 231 (342)
T ss_dssp SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence 88 777664 66799999988 543 22333444 7899999999 9999999999999999999887
Q ss_pred -eEEEEEcCCCC-------CCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccc-ccceeEEEEcCCCceeee
Q 001403 603 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 603 -~~~~~~~~~~~-------~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~~p~~~~~~~ 673 (1084)
+....+..+.. ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++ |
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~------- 302 (342)
T 1yfq_A 232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C------- 302 (342)
T ss_dssp CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence 77777776543 336899999999999999999999999999999999999888 88887776 3
Q ss_pred eccCceeEecCCCCCCCCccceecccCc-cccccc
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP 707 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~-i~~w~~ 707 (1084)
+++++++++.|+. .+.+..
T Consensus 303 ---------------~~~~l~s~s~Dg~~~~~~~~ 322 (342)
T 1yfq_A 303 ---------------SDNILCLATSDDTFKTNAAI 322 (342)
T ss_dssp ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred ---------------CCCeEEEEecCCcccccccc
Confidence 5778889999998 666664
No 107
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=99.97 E-value=2e-29 Score=285.76 Aligned_cols=256 Identities=17% Similarity=0.299 Sum_probs=218.2
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV 461 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~v 461 (1084)
+.+|...|.+++|+|+|++||+|+.||.|+|||+..+.. .....+.+|...|++++|+++ ++ +|++++.|+.|++
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i 83 (379)
T 3jrp_A 7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI 83 (379)
T ss_dssp EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence 678999999999999999999999999999999984321 233367899999999999987 77 8999999999999
Q ss_pred EECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcC------
Q 001403 462 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------ 531 (1084)
Q Consensus 462 wd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------ 531 (1084)
||+.+++ .+..+.+|...|.+++|++..++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 163 (379)
T 3jrp_A 84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED 163 (379)
T ss_dssp EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence 9999997 77888899999999999775337899999999999999998874 4456678888999999999
Q ss_pred -------CCCEEEEEeeCCCCCeeEEEecCCCce----EeeeeeccccccCceEEEEEcCC---CCEEEEEECCCcEEEE
Q 001403 532 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW 597 (1084)
Q Consensus 532 -------d~~~l~~~~~~~~~~~~i~~wd~~~~~----~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~iw 597 (1084)
++.++++++. ++.|++||+.++. ....+.+|. ..|.+++|+|+ +++|++++.||.|++|
T Consensus 164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw 236 (379)
T 3jrp_A 164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW 236 (379)
T ss_dssp ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence 6999999986 6679999998754 445666676 89999999999 8999999999999999
Q ss_pred ECCCCe---EEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001403 598 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 598 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
|+.++. .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus 237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~ 291 (379)
T 3jrp_A 237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW 291 (379)
T ss_dssp EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence 998874 3334444334556899999999999999999999999999865433
No 108
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=99.97 E-value=8.6e-29 Score=279.14 Aligned_cols=291 Identities=16% Similarity=0.153 Sum_probs=237.5
Q ss_pred eecCCCCCeEEEEEcCC---CCEEEEEeCCCEEEEEEccC-CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc
Q 001403 383 LVRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT 458 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd---g~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~ 458 (1084)
.+.+|...|++++|+|+ |++|++|+.||.|+|||+.+ +..+ ...+.+|.+.|.+++|+|+++ +|++++.|+.
T Consensus 34 ~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~ 109 (368)
T 3mmy_A 34 VTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKT 109 (368)
T ss_dssp CSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSE
T ss_pred eccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCc
Confidence 47889999999999999 69999999999999999997 4332 136778999999999999999 8999999999
Q ss_pred EEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 459 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 459 i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+.+.+....+..+. .+.++.+.+ ..+++
T Consensus 110 v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~ 185 (368)
T 3mmy_A 110 AKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVV 185 (368)
T ss_dssp EEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEE
T ss_pred EEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEE
Confidence 9999999998776 5679999999999777788999999999999999999988877777665 555666554 46666
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE----EEEEECCCcEEEEECCCC---eEEEEEcCC
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAG 611 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~ 611 (1084)
++. ++.+.+|++............. ....+.++.+.++... +++++.||.|++||+... ..+..+..+
T Consensus 186 ~~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~ 260 (368)
T 3mmy_A 186 ATA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCH 260 (368)
T ss_dssp EEG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECS
T ss_pred EeC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeee
Confidence 664 5669999998765433222111 1245666666655544 999999999999999987 445555554
Q ss_pred CCC----------CCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 612 GGL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 612 ~~~----------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
... ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+
T Consensus 261 ~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s---------------- 324 (368)
T 3mmy_A 261 RSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN---------------- 324 (368)
T ss_dssp EEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC----------------
T ss_pred ecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC----------------
Confidence 321 148999999999999999999999999999999999999999999999997
Q ss_pred ecCCCCCCCCccceecccCccccccce
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|+++++++++.|+..+.|++.
T Consensus 325 ------~~g~~l~~~s~d~~~~~~~~~ 345 (368)
T 3mmy_A 325 ------HNGNIFAYASSYDWSKGHEFY 345 (368)
T ss_dssp ------TTSSCEEEEECCCSTTCGGGC
T ss_pred ------CCCCeEEEEeccccccccccc
Confidence 678888999888877777754
No 109
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=99.97 E-value=2.6e-29 Score=280.98 Aligned_cols=295 Identities=11% Similarity=0.123 Sum_probs=221.9
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTI 459 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i 459 (1084)
++.+|...|++++|+|+|++||+++.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|++|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~v 83 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKTV 83 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSCE
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCeE
Confidence 47889999999999999999999999999999999976432 33446779999999999999 587 89999999999
Q ss_pred EEEECCCC---------ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec------------
Q 001403 460 KVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------------ 518 (1084)
Q Consensus 460 ~vwd~~~g---------~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~------------ 518 (1084)
++||+.++ +.+..+.+|...|.+++|++..++.++++++.||.|++||+.+.+....+.
T Consensus 84 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 163 (351)
T 3f3f_A 84 KLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPP 163 (351)
T ss_dssp EEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCC
T ss_pred EEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccccccc
Confidence 99999987 567888999999999999765337899999999999999998776433221
Q ss_pred -CCCCeEEEEEEcCC---CCEEEEEeeCCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCC----CEEEEE
Q 001403 519 -APGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILAA 588 (1084)
Q Consensus 519 -~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~----~~l~~~ 588 (1084)
.+...+.+++|+|+ +..+++++. ++.+.+|+...++. +..+.+|. ..|.+++|+|++ ++|+++
T Consensus 164 ~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s~ 236 (351)
T 3f3f_A 164 ANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIATG 236 (351)
T ss_dssp SSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEEE
T ss_pred CCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEEE
Confidence 45668999999997 899999875 66688888777765 56666776 899999999998 899999
Q ss_pred ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE----ECCCeEEEEEcCCCCeeeeccccccceeEEEE
Q 001403 589 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLSV 664 (1084)
Q Consensus 589 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 664 (1084)
+.||.|++||+.++......... .........++....++.+ .....+.+|+....+.+..+.+|...|++++|
T Consensus 237 ~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~ 314 (351)
T 3f3f_A 237 CKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSW 314 (351)
T ss_dssp ETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEEE
T ss_pred cCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEE
Confidence 99999999999876554433221 1122333333433333333 23445666666666788888899999999999
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceee
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA 710 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~ 710 (1084)
+ |+++++++++.|+.+++|++...
T Consensus 315 s----------------------~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 315 N----------------------LTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp C----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred c----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence 7 67889999999999999998743
No 110
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.97 E-value=1.2e-27 Score=251.61 Aligned_cols=294 Identities=14% Similarity=0.130 Sum_probs=207.4
Q ss_pred cEeEEEee-cCCCcEEEEEEeCCCcEEEEECCCC---ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 435 NVNDLAFS-APCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 435 ~V~~l~~s-~d~~~l~l~s~~~d~~i~vwd~~~g---~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.+.++-|- +..+.+.+++++ ..+|++|+..++ ++++++.+|..+|..+.+.|+..+-..++-+
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------ 107 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------ 107 (356)
T ss_dssp EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence 35666663 445555677777 678999999999 8999999999999999997754432222222
Q ss_pred CCceEeecCCCCeEEEEEEcCC----CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEE
Q 001403 511 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 511 ~~~~~~~~~~~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
..+...|.+++++|| ++.+++++. .+.+|++.+++ .+.
T Consensus 108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~ 149 (356)
T 2w18_A 108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS 149 (356)
T ss_dssp -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence 123347889999999 999998753 26666543333 333
Q ss_pred EEE--CCCcEEEEEC-CCCeEEEEEcCCCCCCCcceEEEec---CCCEEEEEECCCeEEEEEcCCCCeeeecccccccee
Q 001403 587 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR 660 (1084)
Q Consensus 587 ~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~ 660 (1084)
+++ .|+.|++|++ .+|+.+..+..+.. .+..++|++ ++.+|++++.|++|+|||+.+++.+..+.++..
T Consensus 150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~--~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~--- 224 (356)
T 2w18_A 150 SSGTLSDQQVEVMTFAEDGGGKENQFLMPP--EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS--- 224 (356)
T ss_dssp EESSSTTCEEEEEEECTTSCEEEEEEECCC--SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred ecccCCCCcEEEEEECCCCceeeeeccCCC--ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence 322 4677777777 34666666665554 578899998 789999999999999999999988877754321
Q ss_pred EEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCe
Q 001403 661 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 740 (1084)
Q Consensus 661 ~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~ 740 (1084)
+...+.+++|+|+|+.
T Consensus 225 ----------------------------------------------------------------~v~~v~~vafSpdG~~ 240 (356)
T 2w18_A 225 ----------------------------------------------------------------YQASVCHKAYSEMGLL 240 (356)
T ss_dssp ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence 1134667889999988
Q ss_pred EEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEE
Q 001403 741 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL 819 (1084)
Q Consensus 741 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~v 819 (1084)
+++++.+.. + ..+++++ |++|++
T Consensus 241 lvs~s~~~~--~------------------------------------------------------w~laSGs~D~tIkl 264 (356)
T 2w18_A 241 FIVLSHPCA--K------------------------------------------------------ESESLRSPVFQLIV 264 (356)
T ss_dssp EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred EEEeccCCC--c------------------------------------------------------ceeeccCCCcEEEE
Confidence 777664311 0 1355666 789999
Q ss_pred EEcCCceeEEEE-----cCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEE-EEEEcCCCCEE
Q 001403 820 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL 893 (1084)
Q Consensus 820 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~-~l~~spd~~~l 893 (1084)
||..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|+|||+.+++++.++.+|...+. +++|||||++|
T Consensus 265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L 341 (356)
T 2w18_A 265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL 341 (356)
T ss_dssp EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence 999999887765 356555444444 367999999999999999999999999999988765 58999999999
Q ss_pred EEEeCCCcEEEEeC
Q 001403 894 VSSGGDAQIFVWDV 907 (1084)
Q Consensus 894 ~s~s~dg~I~iwd~ 907 (1084)
++|+.|++|+|||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
No 111
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=4.3e-28 Score=281.11 Aligned_cols=289 Identities=12% Similarity=0.020 Sum_probs=230.5
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcc---ccceee------------------------------
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACS---MLFKTA------------------------------ 382 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~---~~~~~~------------------------------ 382 (1084)
++.+++|||||++|+++ .+ +.|++||+.++. ......
T Consensus 6 p~~~v~~s~dg~~l~~~-~~---------~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (450)
T 2vdu_B 6 PLQNLLTSRDGSLVFAI-IK---------NCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKK 75 (450)
T ss_dssp CCCEEEECSSSSEEEEE-ET---------TEEEEEEEETTTEEEEEEEEECCC---------------------------
T ss_pred cEEEEEecCCCCEEEEE-eC---------CeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccc
Confidence 88999999999988775 23 789999987766 211110
Q ss_pred ---------------------eecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEcc--CCccccceeeeecccccEeE
Q 001403 383 ---------------------LVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVND 438 (1084)
Q Consensus 383 ---------------------~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~--~~~~~~~~~~l~~h~~~V~~ 438 (1084)
...+|...|.+++|+|+|++| |+++.||.|+|||+. +++.+..+. ...|...|.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~ 154 (450)
T 2vdu_B 76 LKSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNA 154 (450)
T ss_dssp ------------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEE
T ss_pred cccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceE
Confidence 011455579999999999996 889999999999999 776655321 1256789999
Q ss_pred EEeecCCCcEEEEEEeCCCcEEEEECCCCceee----EeccCCCcEEEEeeccc-CCCcEEEEEecCCeEEEEECCCCCc
Q 001403 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~----~~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
++|+|+++ +|++++.|+.|++|++.++.... .+.+|...|.+++|+++ ..+.+|++++.|+.|++||+.+...
T Consensus 155 ~~~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~ 232 (450)
T 2vdu_B 155 ISIAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFI 232 (450)
T ss_dssp EEECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTC
T ss_pred EEEcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCce
Confidence 99999999 89999999999999999887554 78899999999999774 1268999999999999999998887
Q ss_pred eEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc----------------------ccc
Q 001403 514 RVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQH 570 (1084)
Q Consensus 514 ~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------------------~~~ 570 (1084)
... +..+...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+. ...
T Consensus 233 ~~~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (450)
T 2vdu_B 233 VDKWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIE 307 (450)
T ss_dssp EEEECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBC
T ss_pred eeeeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccce
Confidence 766 55788899999999 9999999985 6789999999999888876431 123
Q ss_pred CceEEEEEcCCCCEEEEEE-CCCcEEEEEC--CCC---eEEEEEcCCCCCCCcceEEEecCCCEEEEEEC------CCeE
Q 001403 571 NSVSVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRI 638 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~------dg~i 638 (1084)
..+..++|+|+++++++++ .|+.|++|++ .++ +.+..+..+ ..+.+++|+|++.++++++. +..|
T Consensus 308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i 384 (450)
T 2vdu_B 308 FAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFA 384 (450)
T ss_dssp CCEEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSE
T ss_pred EEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcce
Confidence 5689999999999999998 8999999999 665 667777765 35899999996533333332 4457
Q ss_pred EEEEcCC
Q 001403 639 KILETPE 645 (1084)
Q Consensus 639 ~iwd~~~ 645 (1084)
.+|.+..
T Consensus 385 ~v~~~~~ 391 (450)
T 2vdu_B 385 KFIEYNL 391 (450)
T ss_dssp EEEEEET
T ss_pred EEEEEEc
Confidence 8887653
No 112
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.97 E-value=3e-28 Score=272.11 Aligned_cols=282 Identities=13% Similarity=0.137 Sum_probs=217.1
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEE-E
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-V 405 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~la-s 405 (1084)
+.++..|.+.|.+++|||||++||+|..| + ++||++.+....... +...+..+++++++++++ +
T Consensus 12 ~~~~~~h~~~V~~v~fs~dg~~la~g~~~---------~-~~iw~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 76 (355)
T 3vu4_A 12 IVPENHVSNPVTDYEFNQDQSCLILSTLK---------S-FEIYNVHPVAHIMSQ-----EMRHLSKVRMLHRTNYVAFV 76 (355)
T ss_dssp -------CCCCCEEEECTTSSEEEEECSS---------E-EEEEEETTEEEEEEE-----ECSCCCEEEECTTSSEEEEE
T ss_pred ccccccCCCceEEEEECCCCCEEEEEcCC---------E-EEEEecCCcceeeee-----ecCCeEEEEEcCCCCEEEEE
Confidence 44568899999999999999999998644 3 789999876555432 223588899999999885 5
Q ss_pred EeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC-ceeeEeccCCCcEEEEe
Q 001403 406 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 406 ~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g-~~~~~~~~h~~~v~~~~ 484 (1084)
++.|++|+|||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++||+.++ +.+..+.. +...++
T Consensus 77 ~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~~~~ 144 (355)
T 3vu4_A 77 TGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGGVCE 144 (355)
T ss_dssp CSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEEEEE
T ss_pred ECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCceEE
Confidence 6778999999999987665 443 66789999999864 33333 789999999998 77777665 344445
Q ss_pred ecccCCCcEEEE--EecCCeEEEEECCCCC----------------ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 485 PHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 485 ~~~~~~~~~l~s--~s~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
+++ .+++. |+.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++. +
T Consensus 145 ~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~----d 216 (355)
T 3vu4_A 145 FSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ----D 216 (355)
T ss_dssp EET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET----T
T ss_pred EEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC----C
Confidence 544 35555 6899999999998765 15678889999999999999999999986 7
Q ss_pred ee-EEEecCCCceEeeeee-c-cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EE-------------
Q 001403 547 SF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TI------------- 608 (1084)
Q Consensus 547 ~~-i~~wd~~~~~~~~~~~-~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~------------- 608 (1084)
+. |++||+.+++.+..+. + |. ..|.+++|+|++++|++++.|++|++||+..+.... .+
T Consensus 217 ~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (355)
T 3vu4_A 217 GTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEW 293 (355)
T ss_dssp CSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSS
T ss_pred CCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeecccccccc
Confidence 77 9999999999999998 5 66 899999999999999999999999999997653211 10
Q ss_pred -----cC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 609 -----DA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 609 -----~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
.. .........++|+++++.+++++.||.+++|++..+
T Consensus 294 ~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 294 SLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp CSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred ceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 00 011122467899999999999999999999987643
No 113
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=99.96 E-value=3.3e-28 Score=277.83 Aligned_cols=285 Identities=13% Similarity=0.144 Sum_probs=232.7
Q ss_pred CCeEEEEEcCCCCEEE-EEeCCCEEEEEEccCC-ccccceeeeecccccEeEEEeec-CCCcEEEEEEeCCCcEEEEECC
Q 001403 389 VSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 389 ~~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~-d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
.....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| ++. +|++|+.|++|++||+.
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~ 112 (402)
T 2aq5_A 35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIP 112 (402)
T ss_dssp CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECC
T ss_pred cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEcc
Confidence 3455689999876554 4788999999999654 32233446789999999999999 787 89999999999999999
Q ss_pred CC-------ceeeEeccCCCcEEEEeecccCCC-cEEEEEecCCeEEEEECCCCCceEee--cCCCCeEEEEEEcCCCCE
Q 001403 466 TG-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 466 ~g-------~~~~~~~~h~~~v~~~~~~~~~~~-~~l~s~s~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~d~~~ 535 (1084)
++ +.+..+.+|...|.+++|++ ++ .+|++++.||.|++||+.+++....+ ..+...|.+++|+|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 190 (402)
T 2aq5_A 113 DGGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGAL 190 (402)
T ss_dssp TTCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSC
T ss_pred CCCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCE
Confidence 88 67888999999999999965 44 69999999999999999998888888 788899999999999999
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeee-eccccccCceEEEEEcCCCCEEEEE---ECCCcEEEEECCCCeE-EEEEcC
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDA 610 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~ 610 (1084)
|++++. ++.|++||+++++.+..+ ..|. ...+..+.|+|++.++++| +.|+.|++||+.+++. +.....
T Consensus 191 l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~ 264 (402)
T 2aq5_A 191 ICTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL 264 (402)
T ss_dssp EEEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC
T ss_pred EEEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec
Confidence 999986 677999999999999888 6666 2348999999999999998 7999999999998664 333322
Q ss_pred CCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCe-eeeccc--cccceeEEEEcCCCceeeeeccCceeEecCCC
Q 001403 611 GGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDP 686 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~--~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~ 686 (1084)
.+...+.+++|+|+++++++++ .||.|++|++.+++. +..+.. +...+.+++|+
T Consensus 265 -~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s--------------------- 322 (402)
T 2aq5_A 265 -DTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM--------------------- 322 (402)
T ss_dssp -CCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC---------------------
T ss_pred -cCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe---------------------
Confidence 2233589999999999997555 699999999998874 444444 34788888887
Q ss_pred CCCCCccceecccCccccccce
Q 001403 687 KEDVKPEISVEAENKSEVEKPL 708 (1084)
Q Consensus 687 s~~~~~l~~~~~d~~i~~w~~~ 708 (1084)
|++.++++ .++.+++|++.
T Consensus 323 -p~~~~~~s--~~~~~~~~~l~ 341 (402)
T 2aq5_A 323 -PKRGLEVN--KCEIARFYKLH 341 (402)
T ss_dssp -CGGGSCGG--GTEEEEEEEEE
T ss_pred -ccccccee--cceeEEEEEcC
Confidence 55666654 45589999986
No 114
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=6.2e-27 Score=266.43 Aligned_cols=328 Identities=11% Similarity=0.118 Sum_probs=253.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEEEEECCCCCceEeecCCCCeEEEE
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM 527 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~ 527 (1084)
++++++.|+.|++||+.+++.+..+..|.. +.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 788899999999999999999999887754 88999955 66665 677799999999999888777776655 89999
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT 606 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~ 606 (1084)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~ 152 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN 152 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence 99999999877653 25679999999999988877654 68999999999988 577789999999999999998
Q ss_pred EEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 607 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 607 ~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
.+..+.. +..++|+|+++.+ ++++.++.|++||+.+++....+.
T Consensus 153 ~~~~~~~---~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-------------------------------- 197 (391)
T 1l0q_A 153 TVSVGRS---PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-------------------------------- 197 (391)
T ss_dssp EEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred EEecCCC---cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence 8876543 6899999999887 566778999999987653221110
Q ss_pred CCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcc
Q 001403 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 765 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 765 (1084)
T Consensus 198 -------------------------------------------------------------------------------- 197 (391)
T 1l0q_A 198 -------------------------------------------------------------------------------- 197 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe----CCeEEEEEcCCceeEEEEcCCCCCeEEE
Q 001403 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL 841 (1084)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s----dg~i~vwd~~~~~~~~~~~~~~~~i~~l 841 (1084)
+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.++
T Consensus 198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~ 249 (391)
T 1l0q_A 198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI 249 (391)
T ss_dssp ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence 122344566777777666664 5789999999998888887654 57899
Q ss_pred EEcCCCCcEE-EEEeCCCeEEEEEcCCceeeeeecccccCEE---EEEEcC------------CC----------CEEEE
Q 001403 842 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLVFSD------------AL----------NILVS 895 (1084)
Q Consensus 842 ~~s~~d~~~l-a~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~---~l~~sp------------d~----------~~l~s 895 (1084)
+|+| ++++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+..
T Consensus 250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~ 328 (391)
T 1l0q_A 250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD 328 (391)
T ss_dssp EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence 9999 77766 6778899999999999999888877654421 122222 21 34556
Q ss_pred EeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 896 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 896 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.+.|.++++||+..+.... . .-....|+++|.+.+.
T Consensus 329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR 364 (391)
T ss_dssp CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence 6778899999998765211 1 1124679999998876
No 115
>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A
Probab=99.96 E-value=1.5e-27 Score=251.03 Aligned_cols=270 Identities=11% Similarity=0.053 Sum_probs=201.3
Q ss_pred EEEEEECCCeEEEEEcCCC---CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 628 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
.+++++. ..|++|+...+ +.+.+..++..+|..+.+.|+..-+ ++..- |
T Consensus 56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----------------------~~~~~-~---- 107 (356)
T 2w18_A 56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNL----------------------VCVAL-G---- 107 (356)
T ss_dssp EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSC----------------------EEEEE-C----
T ss_pred EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccce----------------------eeeee-c----
Confidence 4555554 79999999998 7888999999999998888653322 11110 1
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEecC----CCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG 780 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1084)
.-+...|..++++|| ++.++.++.+ +.+|++
T Consensus 108 ------------------~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l------------------------- 142 (356)
T 2w18_A 108 ------------------NLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL------------------------- 142 (356)
T ss_dssp ------------------SSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred ------------------cccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence 014578999999999 9988887744 555542
Q ss_pred CccccccCcCCCCCCCccEEEecCCCCEEEEEe---CCeEEEEEc-CCceeEEEEcCCCCCeEEEEEcC--CCCcEEEEE
Q 001403 781 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG 854 (1084)
Q Consensus 781 ~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~la~g 854 (1084)
++|+.+.++. ++.|++|++ .+|+.+..+..|...++.++|++ +++.+||+|
T Consensus 143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg 199 (356)
T 2w18_A 143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT 199 (356)
T ss_dssp -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence 3566666654 788999999 45888888888888888888887 467899999
Q ss_pred eCCCeEEEEEcCCceeeeeecccc---cCEEEEEEcCCCCEE------------EEEeCCCcEEEEeCCCCceeeeeeee
Q 001403 855 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ 919 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~~~~~~l~~h~---~~V~~l~~spd~~~l------------~s~s~dg~I~iwd~~~~~~~~~~~~~ 919 (1084)
+.|++|+|||+.+|+++.++.+|. ..+.+++|+|||+++ ++|+.|++|++||..+++......+.
T Consensus 200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~ 279 (356)
T 2w18_A 200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC 279 (356)
T ss_dssp ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence 999999999999999999998754 367788999999886 66889999999999998755433333
Q ss_pred cCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCE-EEEEEccCCCEEEEEeCCCcEEEE
Q 001403 920 TPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPI-SQATFSCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 920 ~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v-~~l~fs~dg~~l~t~~~dg~i~vw 997 (1084)
.+.+|.. .+. ..+.++.++|++ .|++|+|||+.+|+++..+ .+|...+ ..++|||||++|++|+.|++|+||
T Consensus 280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL-~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW 353 (356)
T 2w18_A 280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTALL-PPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY 353 (356)
T ss_dssp CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEEE-CCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEEe-cCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence 3455543 333 334448888885 6999999999999999884 4676554 468999999999999999999999
Q ss_pred Ec
Q 001403 998 EA 999 (1084)
Q Consensus 998 d~ 999 (1084)
|+
T Consensus 354 d~ 355 (356)
T 2w18_A 354 HY 355 (356)
T ss_dssp EE
T ss_pred cC
Confidence 96
No 116
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=2.3e-27 Score=274.18 Aligned_cols=353 Identities=12% Similarity=0.027 Sum_probs=252.2
Q ss_pred CCCceEEE---EcCCCceeeeecccccCcc-----ccccceEEEEEcCC--ccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 334 SSSPMSMD---FHPVQHTLLLGLWDVNSGQ-----KLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 334 ~~~V~~v~---~spdg~~las~~~d~~sg~-----~~~~~~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
...+..++ |+|++..++.......... ...++.+.||.+.. ....... .+..+ ..+.+++|+|++.++
T Consensus 60 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~-~~~~~-~~~~~~~~s~~~~~~ 137 (433)
T 3bws_A 60 NIALVEMAIPVYKDEKEIELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGITHRFIS-RFKTG-FQPKSVRFIDNTRLA 137 (433)
T ss_dssp TEEEEEEEEECCCTTCCEEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCSEEEEE-EEECS-SCBCCCEESSSSEEE
T ss_pred CCccEEEEEeeccCCCcEEEEEEccccCcceeeecccCCCceEEEEECCCCCcceEEE-EEcCC-CCceEEEEeCCCeEE
Confidence 34677888 8998877765321110000 01124344555433 3222211 12323 456799999988888
Q ss_pred EEEeCCCEEEEEEccCCcccccee--eeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~--~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
++++.++.|++||+.+++...... .+.+|.+.|.+++|+++++ ++++++.|+.|++||+++++.+..+..|...+.
T Consensus 138 ~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~ 215 (433)
T 3bws_A 138 IPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKTLAYKATVDLTGKWSK 215 (433)
T ss_dssp EEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTTCCEEEEEECSSSSEE
T ss_pred EEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCCceEEEEEcCCCCCee
Confidence 888889999999999987654211 3457888999999999998 899999999999999999999999999999999
Q ss_pred EEeecccCCCcEE-EEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC----CCeeEEEecCCC
Q 001403 482 SLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESE 556 (1084)
Q Consensus 482 ~~~~~~~~~~~~l-~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~~wd~~~ 556 (1084)
+++|++ ++..+ ++++.|+.|++||+++++....+.. ...+.+++|+|+|+++++++.... .++.|++||+.+
T Consensus 216 ~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~ 292 (433)
T 3bws_A 216 ILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDK 292 (433)
T ss_dssp EEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTT
T ss_pred EEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCC
Confidence 999965 55666 4555899999999998776666554 446899999999999998874321 367899999999
Q ss_pred ceEeeeeeccccccCceEEEEEcCCCCEE-EEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 557 GAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 557 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
++.+..+. +. ..+..++|+|+++.+ ++++.|+.|++||+.+++.+..+... ..+.+++|+|+++++++++.+
T Consensus 293 ~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~ 365 (433)
T 3bws_A 293 EKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTIALSPDGKYLYVSCRG 365 (433)
T ss_dssp TEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEEEECTTSSEEEEEECC
T ss_pred CcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeEEEcCCCCEEEEEecC
Confidence 98877663 33 478899999999866 55689999999999999998888643 247899999999999888763
Q ss_pred CeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccc
Q 001403 636 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC 715 (1084)
Q Consensus 636 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~ 715 (1084)
.. .....++++++.||.+++||.........
T Consensus 366 ~~-------------------------------------------------~~~~~~~~~g~~dg~v~~~d~~~~~~~~~ 396 (433)
T 3bws_A 366 PN-------------------------------------------------HPTEGYLKKGLVLGKVYVIDTTTDTVKEF 396 (433)
T ss_dssp CC-------------------------------------------------CTTTCTTSCCSSCCEEEEEETTTTEEEEE
T ss_pred CC-------------------------------------------------ccccccccccccceEEEEEECCCCcEEEE
Confidence 20 01122344444455555555432111110
Q ss_pred eeeccCCccccceEEEEEEecCCCeEEEeec-CCceEEeecc
Q 001403 716 QSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP 756 (1084)
Q Consensus 716 ~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~ 756 (1084)
. . ....+.+++|+|+|+.+++++. ++.+++|++.
T Consensus 397 ~----~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 397 W----E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp E----E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred e----c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 0 0 2245788999999999888775 8999999864
No 117
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=99.96 E-value=1.2e-26 Score=268.05 Aligned_cols=355 Identities=14% Similarity=0.099 Sum_probs=260.9
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC-CEEEEEEccCCccccceeeeecccccEeEEE---eecCCCcEEEEE----------
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLA---FSAPCKQISVIT---------- 452 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~d-g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~---~s~d~~~l~l~s---------- 452 (1084)
....|..+.|+|....++..... ...+++.. .....+..++ |+|++..+++++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~-------------~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 92 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEM-------------DKNIALVEMAIPVYKDEKEIELKLSSPGFQNSSYR 92 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEE-------------ETTEEEEEEEEECCCTTCCEEEEEECTTBCCEEEE
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeec-------------ccCCccEEEEEeeccCCCcEEEEEEccccCcceee
Confidence 44567778888865444443221 11222221 1233456666 777766432222
Q ss_pred --EeCCC--cEEEEECCCC--ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-----eecCCC
Q 001403 453 --CGDDK--TIKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-----DYDAPG 521 (1084)
Q Consensus 453 --~~~d~--~i~vwd~~~g--~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~-----~~~~~~ 521 (1084)
++.++ .|..||..++ +.+..+..+. .+.+++|++ ++.++++++.++.|++||+.+++... .+..+.
T Consensus 93 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~-~~~~~~~s~--~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~ 169 (433)
T 3bws_A 93 IRKPEELNEKLIALDKEGITHRFISRFKTGF-QPKSVRFID--NTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKL 169 (433)
T ss_dssp ESSGGGGTTCEEECCBTTCSEEEEEEEECSS-CBCCCEESS--SSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTC
T ss_pred ecccCCCceEEEEECCCCCcceEEEEEcCCC-CceEEEEeC--CCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccC
Confidence 23344 4444454445 5566666554 455888865 66788888889999999999887765 344677
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMN 600 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~ 600 (1084)
..+.+++|+++++.+++++. ++.|++||+.+++.+..+..+. ..+.+++|+|+++.+++++ .|+.|++||+.
T Consensus 170 ~~v~~~~~~~~~~~~~s~~~----d~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~ 242 (433)
T 3bws_A 170 GFVETISIPEHNELWVSQMQ----ANAVHVFDLKTLAYKATVDLTG---KWSKILLYDPIRDLVYCSNWISEDISVIDRK 242 (433)
T ss_dssp CEEEEEEEGGGTEEEEEEGG----GTEEEEEETTTCCEEEEEECSS---SSEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CceeEEEEcCCCEEEEEECC----CCEEEEEECCCceEEEEEcCCC---CCeeEEEEcCCCCEEEEEecCCCcEEEEECC
Confidence 79999999999999998875 6679999999999998888766 7899999999999886655 79999999999
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE--------CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA--------NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
+++.+..+..+. .+.+++|+|+++++++++ .|+.|++||+.+++......
T Consensus 243 ~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~------------------- 300 (433)
T 3bws_A 243 TKLEIRKTDKIG---LPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIG------------------- 300 (433)
T ss_dssp TTEEEEECCCCS---EEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEE-------------------
T ss_pred CCcEEEEecCCC---CceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeecc-------------------
Confidence 999988876543 378999999999999887 36777777776542211100
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM 752 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~v 752 (1084)
T Consensus 301 -------------------------------------------------------------------------------- 300 (433)
T 3bws_A 301 -------------------------------------------------------------------------------- 300 (433)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE-e-CCeEEEEEcCCceeEEE
Q 001403 753 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKTILT 830 (1084)
Q Consensus 753 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~-s-dg~i~vwd~~~~~~~~~ 830 (1084)
+...+.+++|+|+++.++++ + ++.|++||+.+++....
T Consensus 301 ----------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~ 340 (433)
T 3bws_A 301 ----------------------------------------PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKS 340 (433)
T ss_dssp ----------------------------------------EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ----------------------------------------CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEE
Confidence 11234466777887655444 3 68899999998888877
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeC---------------CCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEE
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMD---------------DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS 895 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~---------------dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s 895 (1084)
+. +...+.+++|+| ++++|++++. ||.|++||+.+++.+..+.+ ...+.+++|+|||++|++
T Consensus 341 ~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~ 417 (433)
T 3bws_A 341 IP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVI 417 (433)
T ss_dssp EE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEE
T ss_pred ec-CCCCCCeEEEcC-CCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEE
Confidence 76 667899999999 8888888876 57999999999999888876 457999999999999998
Q ss_pred EeC-CCcEEEEeCCC
Q 001403 896 SGG-DAQIFVWDVDG 909 (1084)
Q Consensus 896 ~s~-dg~I~iwd~~~ 909 (1084)
++. |+.|++|+++.
T Consensus 418 ~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 418 SDFLDHQIRVYRRDG 432 (433)
T ss_dssp EETTTTEEEEEEETT
T ss_pred EECCCCeEEEEEecC
Confidence 875 99999999874
No 118
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=1.3e-27 Score=274.96 Aligned_cols=253 Identities=16% Similarity=0.314 Sum_probs=213.4
Q ss_pred eecCCCCCeEEEEEcCC-CCEEEEEeCCCEEEEEEccCC-------ccccceeeeecccccEeEEEeecCCCcEEEEEEe
Q 001403 383 LVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspd-g~~las~~~dg~v~iwd~~~~-------~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
...+|...|++++|+|+ +.+||+++.+|.|++||+.+. ........+.+|...|.+++|+|++.. +|++|+
T Consensus 123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~~ 201 (430)
T 2xyi_A 123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSAS 201 (430)
T ss_dssp EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEEC
T ss_pred EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEEe
Confidence 35679999999999997 789999999999999999862 112344478899999999999999876 689999
Q ss_pred CCCcEEEEECCCCce-------eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC---CceEeecCCCCeE
Q 001403 455 DDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGC 524 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~-------~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~~~~~i 524 (1084)
.||+|++||+.++.. ...+.+|...|.+++|++. ++.++++++.||.|++||++.. .....+..+...+
T Consensus 202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v 280 (430)
T 2xyi_A 202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV 280 (430)
T ss_dssp TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence 999999999987432 4567789999999999764 4579999999999999999987 4566777888999
Q ss_pred EEEEEcCCCC-EEEEEeeCCCCCeeEEEecCCC-ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 001403 525 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 525 ~~~~~s~d~~-~l~~~~~~~~~~~~i~~wd~~~-~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 601 (1084)
.+++|+|++. ++++++. ++.|++||+++ +..+..+..|. ..|.+++|+|+++ .+++++.||.|++||+..
T Consensus 281 ~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 281 NCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp EEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEEGGG
T ss_pred EEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEeCCC
Confidence 9999999998 5777765 67799999998 56778888877 8999999999985 688999999999999987
Q ss_pred --------------CeEEEEEcCCCCCCCcceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001403 602 --------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES 646 (1084)
Q Consensus 602 --------------~~~~~~~~~~~~~~~v~~v~~s~~~~-~l~~~~~dg~i~iwd~~~~ 646 (1084)
.+.+..+..+. ..|.+++|+|++. ++++++.||.|++|++...
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 354 IGEEQSTEDAEDGPPELLFIHGGHT--AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TTCCCCHHHHHHCCTTEEEECCCCS--SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred CccccCccccccCCcceEEEcCCCC--CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 25555555443 4699999999999 9999999999999998754
No 119
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=99.96 E-value=1.9e-26 Score=262.41 Aligned_cols=279 Identities=11% Similarity=0.096 Sum_probs=224.7
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE-EEEeCCCEEEEEEccCCccccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHGGSDARQ 425 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l-as~~~dg~v~iwd~~~~~~~~~ 425 (1084)
.+++++..| +.|++||+.++..... +.+| ..+.+++|+|+|++| ++++.|+.|++||+.+++.+.
T Consensus 3 ~l~vs~~~d---------~~v~v~d~~~~~~~~~---~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~- 68 (391)
T 1l0q_A 3 FAYIANSES---------DNISVIDVTSNKVTAT---IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIA- 68 (391)
T ss_dssp EEEEEETTT---------TEEEEEETTTTEEEEE---EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEE-
T ss_pred EEEEEcCCC---------CEEEEEECCCCeEEEE---eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEE-
Confidence 456677666 9999999988765433 4445 458999999999987 566689999999999987654
Q ss_pred eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE-EEEecCCeEE
Q 001403 426 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIK 504 (1084)
Q Consensus 426 ~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l-~s~s~dg~i~ 504 (1084)
.+..+. .+.+++|+|+++. ++++++.++.|++||+.+++.+..+..| ..+.+++|++ +++.+ ++++.++.|+
T Consensus 69 --~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~ 141 (391)
T 1l0q_A 69 --TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTNNGDKTVS 141 (391)
T ss_dssp --EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEETTTTEEE
T ss_pred --EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEeCCCCEEE
Confidence 444444 8999999999994 3355667899999999999998888755 4678999955 56666 7888899999
Q ss_pred EEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCE
Q 001403 505 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ 584 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 584 (1084)
+||+.+++....+..+ ..+.+++|+|+++.+++++. .++.|++||+.+++.+..+..+ ..+.+++|+|++++
T Consensus 142 ~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~~~~~g~~ 213 (391)
T 1l0q_A 142 VINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIAVNPEGTK 213 (391)
T ss_dssp EEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEEECTTSSE
T ss_pred EEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceEECCCCCE
Confidence 9999988777766654 45689999999999865442 2677999999999888777643 47899999999999
Q ss_pred EEEEE---CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeeecccccc
Q 001403 585 ILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSD 657 (1084)
Q Consensus 585 l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~ 657 (1084)
+++++ .++.|++||+.+++.+..+..+.. +.+++|+|+++++ ++++.|+.|++||+.+++.+..+..+..
T Consensus 214 l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~ 287 (391)
T 1l0q_A 214 AYVTNVDKYFNTVSMIDTGTNKITARIPVGPD---PAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGKN 287 (391)
T ss_dssp EEEEEECSSCCEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS
T ss_pred EEEEecCcCCCcEEEEECCCCeEEEEEecCCC---ccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcC
Confidence 99987 789999999999999988876543 6889999999987 5667899999999999988777665443
No 120
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=9.8e-29 Score=304.53 Aligned_cols=255 Identities=17% Similarity=0.301 Sum_probs=215.0
Q ss_pred eecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEE
Q 001403 383 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK 460 (1084)
Q Consensus 383 ~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~ 460 (1084)
++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++.. .....+.+|.++|++++|+|+ ++ ++++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 3678999999999999999999999999999999985432 233478899999999999998 77 899999999999
Q ss_pred EEECCCCc--eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcC-----
Q 001403 461 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA----- 531 (1084)
Q Consensus 461 vwd~~~g~--~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~----- 531 (1084)
+||+.+++ .+..+.+|...|.+++|++..++..+++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 99999987 77888999999999999775437899999999999999998773 3456677888999999999
Q ss_pred --------CCCEEEEEeeCCCCCeeEEEecCCCc----eEeeeeeccccccCceEEEEEcCC---CCEEEEEECCCcEEE
Q 001403 532 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI 596 (1084)
Q Consensus 532 --------d~~~l~~~~~~~~~~~~i~~wd~~~~----~~~~~~~~~~~~~~~v~~~~~s~~---~~~l~~~~~dg~i~i 596 (1084)
++..+++++. ++.|++||+.++ .....+.+|. ..|.+++|+|+ ++++++++.||.|++
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i 233 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII 233 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence 5899999986 667999999877 5566777777 89999999999 899999999999999
Q ss_pred EECCCCeEE---EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001403 597 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN 647 (1084)
Q Consensus 597 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~ 647 (1084)
||+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 999886421 112222344568999999999999999999999999998653
No 121
>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A
Probab=99.96 E-value=6.4e-27 Score=261.28 Aligned_cols=298 Identities=13% Similarity=0.135 Sum_probs=216.7
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 463 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd 463 (1084)
..+|...|.+++|||||++||+|+.++ ++|||+++++... . .+...+..+++.++++. ++++++.|++|++||
T Consensus 15 ~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~---~--~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~iWd 87 (355)
T 3vu4_A 15 ENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIM---S--QEMRHLSKVRMLHRTNY-VAFVTGVKEVVHIWD 87 (355)
T ss_dssp ----CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEE---E--EECSCCCEEEECTTSSE-EEEECSSTTEEEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceee---e--eecCCeEEEEEcCCCCE-EEEEECCccEEEEEE
Confidence 466999999999999999999998876 7899998765332 2 22235888999998883 346677889999999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCC-CceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+.+++.+..+. |...|.++++++ + .++++ .|+.|++||+.+. +....+.. ....+++++ .++++++.
T Consensus 88 ~~~~~~~~~~~-~~~~v~~v~~~~--~--~~~~~-~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~la~~sg- 155 (355)
T 3vu4_A 88 DVKKQDVSRIK-VDAPVKDLFLSR--E--FIVVS-YGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLLVYSNE- 155 (355)
T ss_dssp TTTTEEEEEEE-CSSCEEEEEECS--S--EEEEE-ETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEEEEEES-
T ss_pred CCCCcEEEEEE-CCCceEEEEEcC--C--EEEEE-EcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEEEEeCC-
Confidence 99999999887 677999999854 3 34443 5889999999987 55444433 444566777 67776522
Q ss_pred CCCCeeEEEecCCCce----------------EeeeeeccccccCceEEEEEcCCCCEEEEEECCCc-EEEEECCCCeEE
Q 001403 543 KEGESFLVEWNESEGA----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLL 605 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~----------------~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~iwd~~~~~~~ 605 (1084)
..++.|++||+.+++ .+..+.+|. ..|.+++|+|++++|++|+.||+ |++||+.+++.+
T Consensus 156 -~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~---~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~ 231 (355)
T 3vu4_A 156 -FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT---NPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLV 231 (355)
T ss_dssp -SCTTCEEEEECCC------------------CCEEECCCS---SCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEE
T ss_pred -CcCcEEEEEECCCCCccccccccccccccCcccEEEEccC---CceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEE
Confidence 126679999999875 267778887 89999999999999999999998 999999999999
Q ss_pred EEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCee--eecccc-----ccc---eeEEEEcCCCceeeeec
Q 001403 606 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV--DAAGVL-----SDN---LRKLSVNPISTVTGAGI 675 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-----~~~---i~~~~~~p~~~~~~~~~ 675 (1084)
..+....+...|.+++|+|++++|++++.|+.|++||+...... ..+... ... +....+.+. ...
T Consensus 232 ~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 306 (355)
T 3vu4_A 232 REFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-----KHV 306 (355)
T ss_dssp EEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-----TTC
T ss_pred EEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-----CCC
Confidence 99973223346999999999999999999999999999865321 111110 000 111111100 001
Q ss_pred cCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 676 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 676 ~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
....+++ +++++.+++++.||.+++|++......
T Consensus 307 ~~~~~a~----~~d~~~l~~~~~dg~~~~~~~~~~~~~ 340 (355)
T 3vu4_A 307 RGCKIAW----ISESSLVVVWPHTRMIETFKVVFDDEM 340 (355)
T ss_dssp CCCEEEE----SSSSEEEEEETTTTEEEEEEEEEETTT
T ss_pred CceEEEE----eCCCCEEEEEeCCCeEEEEEEEcCCCC
Confidence 1134455 678999999999999999998755443
No 122
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.7e-28 Score=300.62 Aligned_cols=257 Identities=13% Similarity=0.156 Sum_probs=212.9
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCC--CCEEE
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--GSLLG 404 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspd--g~~la 404 (1084)
+.++.+|.+.|.+++|+|||++||+|..| |+|+|||+.+...... ..+.+|...|.+++|+|+ +++|+
T Consensus 2 ~~~l~gH~~~V~~l~~s~dg~~latg~~d---------g~I~vwd~~~~~~~~~-~~l~~h~~~V~~l~~s~~~~~~~l~ 71 (753)
T 3jro_A 2 VVIANAHNELIHDAVLDYYGKRLATCSSD---------KTIKIFEVEGETHKLI-DTLTGHEGPVWRVDWAHPKFGTILA 71 (753)
T ss_dssp ------CCCCEEEECCCSSSCCEEEEETT---------TEEEEEEEETTEEEEE-EEECCCSSCEEEEEECCTTSCSEEE
T ss_pred eeecccCcceeEEEEECCCCCeEEEEECC---------CcEEEEecCCCCCccc-eeccCCcCceEEEEecCCCCCCEEE
Confidence 45789999999999999999999999888 9999999975433222 237889999999999998 99999
Q ss_pred EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC--CCcEEEEEEeCCCcEEEEECCCCc--eeeEeccCCCcE
Q 001403 405 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV 480 (1084)
Q Consensus 405 s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~l~l~s~~~d~~i~vwd~~~g~--~~~~~~~h~~~v 480 (1084)
+|+.||.|++||+.+++. .....+.+|...|++++|+|+ +. .+++|+.||.|++||+.++. ....+.+|...|
T Consensus 72 s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v 148 (753)
T 3jro_A 72 SCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGV 148 (753)
T ss_dssp EEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECCSSCE
T ss_pred EEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecCCCce
Confidence 999999999999998752 123367789999999999999 88 89999999999999998873 445678899999
Q ss_pred EEEeecccC-----------CCcEEEEEecCCeEEEEECCCCCc----eEeecCCCCeEEEEEEcCC---CCEEEEEeeC
Q 001403 481 YSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN---GRRLFSCGTS 542 (1084)
Q Consensus 481 ~~~~~~~~~-----------~~~~l~s~s~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d---~~~l~~~~~~ 542 (1084)
.+++|+|.. ++.++++++.||.|++||+..... ...+..|...|.+++|+|+ ++++++++.
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~- 227 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQ- 227 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEES-
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEec-
Confidence 999997631 468999999999999999987743 4466788899999999999 899999986
Q ss_pred CCCCeeEEEecCCCceE-----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe
Q 001403 543 KEGESFLVEWNESEGAI-----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 603 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~~~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~ 603 (1084)
++.|++||+.+++. ......+. ..|.+++|+|+++++++++.||.|++|++.++.
T Consensus 228 ---Dg~I~iwd~~~~~~~~~~~~~~~~~~~---~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 228 ---DRTCIIWTQDNEQGPWKKTLLKEEKFP---DVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp ---SSCEEEEEESSSSSCCBCCBSSSSCCS---SCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ---CCEEEEecCCCCCCcceeEEeccCCCC---CceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 66799999988642 22222333 789999999999999999999999999998643
No 123
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.8e-27 Score=273.11 Aligned_cols=265 Identities=15% Similarity=0.091 Sum_probs=220.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee--------------------------------------
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------------------------------------- 430 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-------------------------------------- 430 (1084)
.++.+++|+|||++|+++ .++.|++||+.+|+....+..+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478999999999976666 57789999999998221111222
Q ss_pred ----------------cccccEeEEEeecCCCcEE-EEEEeCCCcEEEEECC--CCceeeEec--cCCCcEEEEeecccC
Q 001403 431 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE 489 (1084)
Q Consensus 431 ----------------~h~~~V~~l~~s~d~~~l~-l~s~~~d~~i~vwd~~--~g~~~~~~~--~h~~~v~~~~~~~~~ 489 (1084)
+|.+.|.+++|+|+++ + +++++.|++|++||+. +++.+..+. .|...|.+++|++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp-- 159 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE-- 159 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence 3444799999999999 5 4899999999999999 888888886 5778999999955
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceE----eecCCCCeEEEEEEcCC---CCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
++.+|++++.+|.|++|++....... .+..+...|.+++|+|+ +++|++++. ++.|++||+.+++.+..
T Consensus 160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~ 235 (450)
T 2vdu_B 160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK 235 (450)
T ss_dssp TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence 67899999999999999998776543 56678889999999999 999999986 56799999999988777
Q ss_pred -eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-----------------------CCCCCcc
Q 001403 563 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP 618 (1084)
Q Consensus 563 -~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~ 618 (1084)
+.+|. ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....+.
T Consensus 236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 311 (450)
T 2vdu_B 236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS 311 (450)
T ss_dssp ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence 55776 899999999 9999999999999999999999998887632 1123578
Q ss_pred eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---CeeeeccccccceeEEEEcCC
Q 001403 619 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI 667 (1084)
Q Consensus 619 ~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~i~~~~~~p~ 667 (1084)
.++|+|+++++++++ .++.|++|++ .++ ..+..+..+ ..+.+++++|.
T Consensus 312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~ 365 (450)
T 2vdu_B 312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND 365 (450)
T ss_dssp EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence 999999999999999 8999999999 555 566666766 78899999864
No 124
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.5e-27 Score=265.64 Aligned_cols=278 Identities=12% Similarity=0.068 Sum_probs=211.0
Q ss_pred ecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcc
Q 001403 623 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS 702 (1084)
Q Consensus 623 s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i 702 (1084)
.+++.++++|+.||.|++||+.+++.+..+. .
T Consensus 45 ~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~---------------------------------------------- 76 (343)
T 3lrv_A 45 YYDKWVCMCRCEDGALHFTQLKDSKTITTIT--T---------------------------------------------- 76 (343)
T ss_dssp SEEEEEEEEEEETTEEEEEEESSSSCEEEEE--E----------------------------------------------
T ss_pred cCCCCEEEEECCCCcEEEEECCCCcEEEEEe--c----------------------------------------------
Confidence 3578899999999999999998876655443 1
Q ss_pred ccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc
Q 001403 703 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 782 (1084)
Q Consensus 703 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 782 (1084)
..|.++.++|+ +++++.|+.+++|+... .+.+|+..++..
T Consensus 77 ------------------------~~v~~~~~~~~---~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~ 116 (343)
T 3lrv_A 77 ------------------------PNPRTGGEHPA---IISRGPCNRLLLLYPGN-------------QITILDSKTNKV 116 (343)
T ss_dssp ------------------------ECCCTTCCCCS---EEEECSTTEEEEEETTT-------------EEEEEETTTCCE
T ss_pred ------------------------CCceeeeeCCc---eEEecCCCeEEEEEccC-------------ceEEeecCCcce
Confidence 11222334444 67777777777777543 245577766664
Q ss_pred cccccCcCCCCCCCccEEEecC--CCCEEEEEe-CCeEEEEEcCCceeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 783 FMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 783 ~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
+..... +|...|.+++++| +++++++++ ||+|++||+.+++....... +...+.+++|+| ++.+|++|+.||
T Consensus 117 ~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg 192 (343)
T 3lrv_A 117 LREIEV---DSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDG 192 (343)
T ss_dssp EEEEEC---CCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTS
T ss_pred eEEeec---CCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCC
Confidence 444332 3678899999999 999999988 89999999999998777644 455899999999 899999999999
Q ss_pred eEEEEEcCCceee-eeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCc--eEE
Q 001403 859 TILIYNARSSEVI-SKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THI 934 (1084)
Q Consensus 859 ~i~iwd~~~~~~~-~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~~ 934 (1084)
.|++||+.+++.+ ..+.+ |.++|++++|+|++.+|++++ |++|++||+.+++... .+.....+.. .+ .++
T Consensus 193 ~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~ 266 (343)
T 3lrv_A 193 ILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTY 266 (343)
T ss_dssp CEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEE
T ss_pred EEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEE
Confidence 9999999999887 78888 999999999999999999999 5599999999865322 1222212221 22 469
Q ss_pred EEccCCCEEEEE-e-CCeEEEEEcCCcceeeEeecCCCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCc
Q 001403 935 QFHKDQTRFLLV-H-ETHLAIYEAEELTCLKQWFPISSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 935 ~~s~dg~~la~~-~-d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~---dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
+|+|+|++|+++ . ++.+++|++.++...... .++..++|++ +++.+++++.||.+.++-.....
T Consensus 267 ~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~ 335 (343)
T 3lrv_A 267 DIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS 335 (343)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred EECCCCCEEEEecCCCCcEEEEEEcccccceEe-----cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence 999999999994 4 899999999766654432 4678889998 99999999999999988655443
No 125
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.96 E-value=1.6e-26 Score=271.42 Aligned_cols=343 Identities=9% Similarity=0.077 Sum_probs=257.9
Q ss_pred EEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC--CCCeEE
Q 001403 528 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL 605 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~ 605 (1084)
+++|++..+++.+. ++.|.+||..+++++..+.... .+..++|+|+++++++++.|+.|++||+ .+++.+
T Consensus 144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~ 215 (543)
T 1nir_A 144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV 215 (543)
T ss_dssp CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence 37788877777654 6779999999999999988544 3889999999999999999999999999 899998
Q ss_pred EEEcCCCCCCCcceEEEec----CCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCcee
Q 001403 606 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~----~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
..+.... .+..++|+| ||+++++++. ++.|.+||..+++.+..+..+...+....+
T Consensus 216 ~~i~~g~---~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~---------------- 276 (543)
T 1nir_A 216 AEIKIGI---EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTY---------------- 276 (543)
T ss_dssp EEEECCS---EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCE----------------
T ss_pred EEEecCC---CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCcccc----------------
Confidence 8887433 368999999 9999999885 899999999988777655421110000000
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe-ecCCceEEeeccCCc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRND 759 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~ 759 (1084)
.....+..+.+++++..+++. ..++.|.+|++...+
T Consensus 277 -------------------------------------------~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~ 313 (543)
T 1nir_A 277 -------------------------------------------HPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID 313 (543)
T ss_dssp -------------------------------------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred -------------------------------------------ccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence 012367889999987766544 557889888865432
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC----
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP---- 833 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~---- 833 (1084)
. +....+ .+...+..++|+|||+++++++ +++|.+||+.+++++..+..
T Consensus 314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 1 110001 1345677899999999887765 68999999999999988874
Q ss_pred CCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-------ceeeeeecccccCEEEEEEcCCCCEEEEEe-------C
Q 001403 834 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G 898 (1084)
Q Consensus 834 ~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~s~s-------~ 898 (1084)
|.+....+ ++|+++.+++++. .|++|.+||+.+ ++++.++.+|.+.+..++|+||+++|++++ .
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~ 447 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI 447 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence 44433333 5774577888876 689999999998 899999999999999999999999999987 2
Q ss_pred CCcEEEEeCCCCcee-eeeeeecCCCCccCCCCceEEEEccCCCEEEEE------eCCeEEEEEcCCcceeeEee
Q 001403 899 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF 966 (1084)
Q Consensus 899 dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~------~d~~i~vwd~~~~~~~~~~~ 966 (1084)
+++|.+||+.+++.. ....+....+.......+..++|+|||+++.++ .++.|.|||..+++++..+.
T Consensus 448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 779999999998754 211111100001112368999999999999974 26899999999999988754
No 126
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=99.96 E-value=5.1e-27 Score=270.02 Aligned_cols=258 Identities=16% Similarity=0.225 Sum_probs=213.9
Q ss_pred eeecccCCCCceEEEEcCC-CceeeeecccccCccccccceEEEEEcCCc-------cccceeeeecCCCCCeEEEEEcC
Q 001403 327 AQTLIEGSSSPMSMDFHPV-QHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-------SMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spd-g~~las~~~d~~sg~~~~~~~v~iwd~~~~-------~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...+..|.+.|.+++|+|+ +.+||++..| +.|+|||+.+. ........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~d---------g~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPS---------SDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSS---------SCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCC---------CcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCC
Confidence 3456689999999999997 7899998877 99999999762 11112233678999999999999
Q ss_pred CCC-EEEEEeCCCEEEEEEccCCccc----cceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC---cee
Q 001403 399 DGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRT 470 (1084)
Q Consensus 399 dg~-~las~~~dg~v~iwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g---~~~ 470 (1084)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. ++++++.|+.|++||++++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999885331 223456789999999999995444 8999999999999999987 577
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-CCceEeecCCCCeEEEEEEcCCCC-EEEEEeeCCCCCee
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESF 548 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~d~~-~l~~~~~~~~~~~~ 548 (1084)
..+..|...|.+++|++.. ..++++++.||.|++||++. ......+..+...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 8888999999999997642 24799999999999999998 455777888899999999999996 5777764 667
Q ss_pred EEEecCCC--------------ceEeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCCC
Q 001403 549 LVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 549 i~~wd~~~--------------~~~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~~ 602 (1084)
|.+||+.. .+.+..+.+|. ..|..++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 35566666666 8899999999999 8999999999999998753
No 127
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.95 E-value=1.1e-27 Score=271.52 Aligned_cols=245 Identities=11% Similarity=0.084 Sum_probs=174.6
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCcccc--ceeeeecccccEeEEEeec--------CCCcEEEEEEeC
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGD 455 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~--------d~~~l~l~s~~~ 455 (1084)
.|...+....+++++.+||+++.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|++|+.
T Consensus 87 ~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~ 164 (393)
T 4gq1_A 87 LHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGD 164 (393)
T ss_dssp ----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEET
T ss_pred ccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEEC
Confidence 355556666677788999999999999999999886532 2235679999999999998 777 8999999
Q ss_pred CCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee------------------
Q 001403 456 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------------ 517 (1084)
Q Consensus 456 d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~------------------ 517 (1084)
|++|+|||+.++..+..+.+|..+|.+++|+|. +..+|++++.||+|++||+.+.+.....
T Consensus 165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~ 243 (393)
T 4gq1_A 165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP 243 (393)
T ss_dssp TSEEEEEEEETTEEEEEEEECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred CCeEEEEECCCCceeeeecCCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence 999999999999988888899999999999764 2358999999999999999876543221
Q ss_pred -------cCCCCeEEEEEEc-CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEE-------------
Q 001403 518 -------DAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVV------------- 576 (1084)
Q Consensus 518 -------~~~~~~i~~~~~s-~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~------------- 576 (1084)
..+...+.++.|+ +|++.+++++. ++.+++||+.+++....+..+. ..+..+
T Consensus 244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 244 LVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp GC------CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC----------------------CCSCSEEEECSSC
T ss_pred ceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeec---CccccEEEccccccccccC
Confidence 2344567788876 79999999875 6779999999887766665544 222222
Q ss_pred -----EEcC--CCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 577 -----HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 577 -----~~s~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
.|+| ++.++++|+.||.|++||+.+++....+..+.. .|.+++|+|||++||+++.+| +.+|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL 387 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRL 387 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence 2332 233556688999999999999988877765544 699999999999999998765 555554
No 128
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=99.95 E-value=9.3e-26 Score=264.81 Aligned_cols=330 Identities=13% Similarity=0.150 Sum_probs=248.8
Q ss_pred EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc--CCCCeeeecccc
Q 001403 578 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL 655 (1084)
Q Consensus 578 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~ 655 (1084)
++|++..+++++.|++|.+||..+++++..+..... +..++|+|||+++++++.|+.|.+||+ .+++.+..+.
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-- 219 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-- 219 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence 788888888999999999999999999999874332 678999999999999999999999999 5554433221
Q ss_pred ccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe
Q 001403 656 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN 735 (1084)
Q Consensus 656 ~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s 735 (1084)
+...+..++|+
T Consensus 220 ---------------------------------------------------------------------~g~~p~~va~s 230 (543)
T 1nir_A 220 ---------------------------------------------------------------------IGIEARSVESS 230 (543)
T ss_dssp ---------------------------------------------------------------------CCSEEEEEEEC
T ss_pred ---------------------------------------------------------------------cCCCcceEEeC
Confidence 12346788999
Q ss_pred c----CCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC-------CCCCCCccEEEec
Q 001403 736 N----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALS 803 (1084)
Q Consensus 736 ~----~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s 803 (1084)
| ||+++++++. ++.+.+||....+ ++......+ ......+.++.++
T Consensus 231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~----------------------~~~~i~~~g~~~~~~~~~~~~~v~~i~~s 288 (543)
T 1nir_A 231 KFKGYEDRYTIAGAYWPPQFAIMDGETLE----------------------PKQIVSTRGMTVDTQTYHPEPRVAAIIAS 288 (543)
T ss_dssp CSTTCTTTEEEEEEEESSEEEEEETTTCC----------------------EEEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred CCcCCCCCEEEEEEccCCeEEEEeccccc----------------------cceeecccCcccCccccccCCceEEEEEC
Confidence 9 9999988875 7889888754332 111111100 0023478899999
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEE-EeCCCeEEEEEcCCceeeeeecc--
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG-- 876 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~-g~~dg~i~iwd~~~~~~~~~l~~-- 876 (1084)
|++..+++.. ++.|.+||+.+++.+. .+. +...+..++|+| +++++++ +..+++|.+||..+++++..+..
T Consensus 289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~ 366 (543)
T 1nir_A 289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK 366 (543)
T ss_dssp SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred CCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence 9887766654 6999999998866543 443 556788899999 7886654 45689999999999999888774
Q ss_pred --cccCEEEEEEcCC-CCEEEEEe-CCCcEEEEeCCCCce--eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe---
Q 001403 877 --HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--- 947 (1084)
Q Consensus 877 --h~~~V~~l~~spd-~~~l~s~s-~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 947 (1084)
|.+....+ ++|+ +.+++++. .|++|.+||+.+... ...++++...++.. .+..++|+|||++|+++.
T Consensus 367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~ 442 (543)
T 1nir_A 367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFN 442 (543)
T ss_dssp SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTC
T ss_pred CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCC
Confidence 65544444 5677 66777775 689999999987210 01224444444433 577899999999999964
Q ss_pred -----CCeEEEEEcCCcceeeEee--------cCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCCceeEEec
Q 001403 948 -----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 948 -----d~~i~vwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+++|.|||+.+++.....+ ..+...+..+.|+|||+.|+++. .|+.|.|||..+++++.++.
T Consensus 443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 522 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK 522 (543)
T ss_dssp SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence 6799999999999874432 34578999999999999999763 47999999999999998887
No 129
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=99.95 E-value=4.2e-27 Score=262.03 Aligned_cols=271 Identities=10% Similarity=0.044 Sum_probs=213.3
Q ss_pred EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-
Q 001403 340 MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH- 418 (1084)
Q Consensus 340 v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~- 418 (1084)
..+.+|+.+||+|+.| ++|++||+.++....... ...|.+++|+|+ +++++.|++|++|+..
T Consensus 42 ~~~~~d~~~l~sg~~D---------g~v~iwd~~~~~~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~ 104 (343)
T 3lrv_A 42 KSMYYDKWVCMCRCED---------GALHFTQLKDSKTITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLLYPGN 104 (343)
T ss_dssp SSSSEEEEEEEEEEET---------TEEEEEEESSSSCEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEEETTT
T ss_pred hhhcCCCCEEEEECCC---------CcEEEEECCCCcEEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEEEccC
Confidence 3456799999999988 999999999876654432 457888899998 9999999999999766
Q ss_pred --------CCccccceeeeecccccEeEEEeec--CCCcEEEEEEeCCCcEEEEECCCCceeeEec-cCCCcEEEEeecc
Q 001403 419 --------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHA 487 (1084)
Q Consensus 419 --------~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-~h~~~v~~~~~~~ 487 (1084)
+++.++. ...+|.+.|.+++|+| +++ ++++++.|++|++||+++++.+.... .|...|.+++|+|
T Consensus 105 ~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~p 180 (343)
T 3lrv_A 105 QITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHK 180 (343)
T ss_dssp EEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECT
T ss_pred ceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECC
Confidence 3332221 1226668999999999 999 89999999999999999999877664 4566899999955
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCce-EeecC-CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 565 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~ 565 (1084)
++.+|++|+.||.|++||+++++.. ..+.. |...|.+++|+|+|.+|++++. +.|++||+++++....+..
T Consensus 181 --dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-----~~v~iwd~~~~~~~~~~~~ 253 (343)
T 3lrv_A 181 --DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-----QTVVCFDLRKDVGTLAYPT 253 (343)
T ss_dssp --TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-----SBEEEEETTSSTTCBSSCC
T ss_pred --CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-----CeEEEEEcCCCCcceeecc
Confidence 7789999999999999999998877 67777 8899999999999999999982 2699999999887666554
Q ss_pred cccccCce--EEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec---CCCEEEEEECCCeEE
Q 001403 566 LQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIK 639 (1084)
Q Consensus 566 ~~~~~~~v--~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~dg~i~ 639 (1084)
+..+...+ .+++|+|++++|++++. |+.+++|++.+....... ..+..++|.+ +...+++++.|+.+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~d~~~~ 327 (343)
T 3lrv_A 254 YTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVVCGDGGIA 327 (343)
T ss_dssp CBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEEEETTEEE
T ss_pred cccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEEecCCceE
Confidence 32111333 46999999999999998 999999999765433222 1356677887 888999999999998
Q ss_pred EEEcC
Q 001403 640 ILETP 644 (1084)
Q Consensus 640 iwd~~ 644 (1084)
++-..
T Consensus 328 ~~~~~ 332 (343)
T 3lrv_A 328 AILKT 332 (343)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 87544
No 130
>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A
Probab=99.94 E-value=1.3e-26 Score=262.89 Aligned_cols=251 Identities=6% Similarity=-0.049 Sum_probs=178.4
Q ss_pred eeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccce--eeeecCCCCCeEEEEEcC------
Q 001403 327 AQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK--TALVRDPGVSVNRVVWSP------ 398 (1084)
Q Consensus 327 ~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~--~~~~~~h~~~V~~v~fsp------ 398 (1084)
......|...+....+++++.+||+++.| ++|+|||+.++..... ...+.||.+.|.+++|+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~las~~~d---------~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~ 152 (393)
T 4gq1_A 82 SYSENLHDGDGNVNSSPVYSLFLACVCQD---------NTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADN 152 (393)
T ss_dssp EEECC----------CCEEEEEEEEEETT---------SCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTC
T ss_pred cccccccCCCcceeecCCCCCEEEEEeCC---------CcEEEEECCCCccceeeeecccCCCCCceEEEEEcccccccc
Confidence 34445667677788889999999999988 9999999987654322 234789999999999998
Q ss_pred --CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe---
Q 001403 399 --DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--- 473 (1084)
Q Consensus 399 --dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~--- 473 (1084)
||++||+|+.|++|+|||+.++..+. .+.+|..+|.+++|+|++.. +|++++.|++|++||+.+++.....
T Consensus 153 ~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~~~~ 228 (393)
T 4gq1_A 153 RLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEENSQT 228 (393)
T ss_dssp SEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC--------
T ss_pred CCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCccccccccc
Confidence 89999999999999999998876444 56689999999999999864 7999999999999999987654322
Q ss_pred ----------------------ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEE---
Q 001403 474 ----------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--- 528 (1084)
Q Consensus 474 ----------------------~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--- 528 (1084)
.+|...+.++.|. .+++..+++++.|+++++||+........+..+...+..+.
T Consensus 229 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~-~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~ 307 (393)
T 4gq1_A 229 ELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWI-GSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLP 307 (393)
T ss_dssp --CSCCCSEEEESGGGC------CCSSSCSEEEEE-TTTTCEEEEECTTSEEEEEEC-------------------CCSC
T ss_pred CCcccceEEecccccceeeeecccccccceeeeee-cCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEcc
Confidence 3577788888885 35778999999999999999987665544444333333322
Q ss_pred ---------------Ec-CCCCE-EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC
Q 001403 529 ---------------YS-ANGRR-LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD 591 (1084)
Q Consensus 529 ---------------~s-~d~~~-l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d 591 (1084)
++ +.+.. +++++. ++.|++||..+++....+..|. .+|.+++|+|||++|++++++
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~----Dg~V~lwd~~~~~~~~~~~~~~---~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 308 NVQGISLFPSLLGACPHPRYMDYFATAHSQ----HGLIQLINTYEKDSNSIPIQLG---MPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp SEEEECSSCCSSCCEECSSCTTEEEEEETT----TTEEEEEETTCTTCCEEEEECS---SCEEEEEECTTSSEEEEEESS
T ss_pred ccccccccCcceeEEEccCCCCEEEEEECC----CCEEEEEECCCCcEEEEecCCC---CcEEEEEEcCCCCEEEEEeCC
Confidence 22 23344 444443 7789999999999888888877 899999999999999999977
Q ss_pred CcEEEEEC
Q 001403 592 HVIKIWDM 599 (1084)
Q Consensus 592 g~i~iwd~ 599 (1084)
| +.+|.+
T Consensus 381 G-v~lvrL 387 (393)
T 4gq1_A 381 S-VLLTRL 387 (393)
T ss_dssp E-EEEEEE
T ss_pred C-eEEEEE
Confidence 6 555554
No 131
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.94 E-value=1.3e-24 Score=247.64 Aligned_cols=313 Identities=8% Similarity=0.029 Sum_probs=240.6
Q ss_pred CCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEc--CCccccceeeeecCCCCCeEEEEEcC------------
Q 001403 334 SSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDI--GACSMLFKTALVRDPGVSVNRVVWSP------------ 398 (1084)
Q Consensus 334 ~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~--~~~~~~~~~~~~~~h~~~V~~v~fsp------------ 398 (1084)
...|...+|++.|. ++++|..+...+. ..+.+++|||+ .++...... .+.+|...+..+++++
T Consensus 62 ~~~~~~~~w~~~g~~~~~~g~~~~~~~G-~~~~~i~lwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~g~~ 139 (415)
T 2hqs_A 62 AQEVQPAAWSALGIDAVVVGQVTPNPDG-SYNVAYQLVDTGGAPGTVLAQN-SYKVNKQWLRYAGHTASDEVFEKLTGIK 139 (415)
T ss_dssp GGGCCHHHHHTTTCCEEEEEEEEECTTS-CEEEEEEEEECSSSTTCEEEEE-EEEECGGGHHHHHHHHHHHHHHHHHSSC
T ss_pred ccCcCHHHHHhcCCCEEEEEEEEECCCC-eEEEEEEEEeCCCCCCCEEeee-EEEcChhHHHHHHHHHHHHHHHHHcCCC
Confidence 35788889999985 5557765422110 01238999999 777654332 3677888888888875
Q ss_pred --CCCEEEEEeCC------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC---cEEEEECCCC
Q 001403 399 --DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---TIKVWDAVTG 467 (1084)
Q Consensus 399 --dg~~las~~~d------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~---~i~vwd~~~g 467 (1084)
.+..+++++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.++ .|++||+.++
T Consensus 140 ~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~~~~~~i~~~d~~tg 213 (415)
T 2hqs_A 140 GAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFESGRSALVIQTLANG 213 (415)
T ss_dssp CCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECTTSSCEEEEEETTTC
T ss_pred CcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEecCCCcEEEEEECCCC
Confidence 26777777654 799999998643 33 5778999999999999999 788888775 9999999999
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEE-EEecCCe--EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
+.. .+..|...+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+|||++|++++. .+
T Consensus 214 ~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~-~~ 288 (415)
T 2hqs_A 214 AVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSD-QA 288 (415)
T ss_dssp CEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEEC-TT
T ss_pred cEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEEC-CC
Confidence 875 5777888999999955 677776 6666655 99999987654 556667778999999999999998874 23
Q ss_pred CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---CcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 545 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+...|++||+.+++.. .+..+. ..+..++|+|+|++|++++.+ ..|++||+.+++.. .+..+. .+.+++
T Consensus 289 g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~ 360 (415)
T 2hqs_A 289 GRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF---LDETPS 360 (415)
T ss_dssp SSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS---SCEEEE
T ss_pred CCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC---CcCCeE
Confidence 3457999999888743 333343 578899999999999987754 58999999998874 343322 588999
Q ss_pred EecCCCEEEEEECCC---eEEEEEcCCCCeeeeccccccceeEEEEcCCC
Q 001403 622 FNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS 668 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 668 (1084)
|+|+|++|++++.++ .|++||+. +.....+..+.+.|.+++|+|..
T Consensus 361 ~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 361 LAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp ECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred EcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence 999999999988876 79999987 55667788899999999999864
No 132
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=99.93 E-value=7e-24 Score=241.59 Aligned_cols=305 Identities=13% Similarity=0.111 Sum_probs=226.6
Q ss_pred cccEeEEEeecCCCcEEEEEEe----CCC----cEEEEEC--CCCcee--eEeccCCCcEEEEeeccc------------
Q 001403 433 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------ 488 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~----~d~----~i~vwd~--~~g~~~--~~~~~h~~~v~~~~~~~~------------ 488 (1084)
...+...+|++.|.. ++++|+ .|| +|++||+ .+++.+ ..+.+|...+..+++.+.
T Consensus 62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~ 140 (415)
T 2hqs_A 62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG 140 (415)
T ss_dssp GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence 356778889999876 666775 467 8999999 999987 458889888887776531
Q ss_pred CCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 489 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 489 ~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
..+..++.++.+ +.|++||++. .....+..+...+.+++|+|||+.|++++.++ +...|++||+.+++.. .
T Consensus 141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~ 217 (415)
T 2hqs_A 141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q 217 (415)
T ss_dssp CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence 013466666654 7999999985 44556666778899999999999999988532 2468999999998875 4
Q ss_pred eeccccccCceEEEEEcCCCCEEE-EEECCCc--EEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-C--
Q 001403 563 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-N-- 636 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~~s~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g-- 636 (1084)
+..+. ..+.+++|+|||+.|+ +++.++. |++||+.+++.. .+..+. ..+.+++|+|||+.|++++.+ +
T Consensus 218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~~spdg~~l~~~s~~~g~~ 291 (415)
T 2hqs_A 218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR-QVTDGR--SNNTEPTWFPDSQNLAFTSDQAGRP 291 (415)
T ss_dssp EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-ECCCCS--SCEEEEEECTTSSEEEEEECTTSSC
T ss_pred eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEE-eCcCCC--CcccceEECCCCCEEEEEECCCCCc
Confidence 55555 6899999999999888 5665554 999999988763 444332 357899999999999888763 4
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
.|++||+.+++... +.
T Consensus 292 ~i~~~d~~~~~~~~-l~--------------------------------------------------------------- 307 (415)
T 2hqs_A 292 QVYKVNINGGAPQR-IT--------------------------------------------------------------- 307 (415)
T ss_dssp EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence 55666655432100 00
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
.+...
T Consensus 308 ---------------------------------------------------------------------------~~~~~ 312 (415)
T 2hqs_A 308 ---------------------------------------------------------------------------WEGSQ 312 (415)
T ss_dssp ---------------------------------------------------------------------------CSSSE
T ss_pred ---------------------------------------------------------------------------cCCCc
Confidence 02223
Q ss_pred ccEEEecCCCCEEEEEe-C---CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC---eEEEEEcCCce
Q 001403 797 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE 869 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s-d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg---~i~iwd~~~~~ 869 (1084)
+.+++|+|||++|++++ + ..|.+||+.+++.. .+..+. .+.+++|+| ++++|++++.++ .|++||+. ++
T Consensus 313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~ 388 (415)
T 2hqs_A 313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR 388 (415)
T ss_dssp EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence 44566777777776665 2 47999999888763 455454 899999999 899888888777 89999987 56
Q ss_pred eeeeecccccCEEEEEEcCCC
Q 001403 870 VISKLEGHSKRVTGLVFSDAL 890 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~ 890 (1084)
....+.+|.+.|.+++|+|.-
T Consensus 389 ~~~~l~~~~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 389 FKARLPATDGQVKFPAWSPYL 409 (415)
T ss_dssp CEEECCCSSSEEEEEEECCCC
T ss_pred cEEEeeCCCCCCcCCcccccc
Confidence 678889999999999999864
No 133
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.93 E-value=1.6e-23 Score=259.83 Aligned_cols=292 Identities=13% Similarity=0.085 Sum_probs=214.4
Q ss_pred CCCceEEEEcCCCceeeeecc-cccCccccccceEEEEEcCCccccceeeeecCCC----------------------CC
Q 001403 334 SSSPMSMDFHPVQHTLLLGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG----------------------VS 390 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~-d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~----------------------~~ 390 (1084)
...|.+++|||||++||++.. |-..+ ...|.+||+.++....... ..++. ..
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~----~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRN----QLDLWSYDIGSGQTRLLVD-SKVVLPGTETLSDEEKARRERQRIAAMTG 110 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTT----EEEEEEEETTTCCEEEEEC-GGGTC--------------------CCEE
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCc----ccEEEEEECCCCceeEccc-hhhcccccccccchhhhhhhhhhhccccC
Confidence 347999999999999999876 51000 1389999998865432211 11122 23
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCc--cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
|.+++|||||++|++++. +.|.+||+.++. ... .+..|...+.+++|||||+ .|+.++ ++.|.+||+.+++
T Consensus 111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~ 183 (741)
T 2ecf_A 111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGR 183 (741)
T ss_dssp SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTE
T ss_pred cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCC
Confidence 889999999999999987 899999999882 223 4667888899999999999 677776 5699999999988
Q ss_pred eeeEeccCCCc----------------EEEEeecccCCCcEEEEEecCC-------------------------------
Q 001403 469 RTYSFEGHGAP----------------VYSLCPHAKENIHFIFSISVDG------------------------------- 501 (1084)
Q Consensus 469 ~~~~~~~h~~~----------------v~~~~~~~~~~~~~l~s~s~dg------------------------------- 501 (1084)
.......+... +.+++| ++||++|++++.|+
T Consensus 184 ~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~ 261 (741)
T 2ecf_A 184 QMQLTADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV 261 (741)
T ss_dssp EEECCCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred EEEeccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence 76555444433 356778 45778899888765
Q ss_pred --eEEEEECCC-CCceEeec--CCCCeEEEEEEcCCCCEEEEEeeC-CCCCeeEEEecCCCceEeeeeeccccccC---c
Q 001403 502 --KIKAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHN---S 572 (1084)
Q Consensus 502 --~i~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~-~~~~~~i~~wd~~~~~~~~~~~~~~~~~~---~ 572 (1084)
.|.+||+.+ ++...... .+...+..++| |||++|++++.+ ...+..|++||+.+++....+..+. .. .
T Consensus 262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~ 338 (741)
T 2ecf_A 262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPL 338 (741)
T ss_dssp EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCC
T ss_pred eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCc
Confidence 788899887 66544332 35568899999 999999987652 2346789999999998877776554 11 3
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceE-EEecCCCEEEEEEC-CC--eEEEEEcCC
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETPE 645 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~~~~l~~~~~-dg--~i~iwd~~~ 645 (1084)
+..++|+|||+.+++++.||.+++|.+. ++. ...+..+. ..+..+ .|+|+|+.++..+. ++ .+++|++..
T Consensus 339 ~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~~--~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 339 HNSLRFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHGN--WSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CSCCEECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCSS--SCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCceEECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeecc--eEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 4678999999988889999988888765 344 55555432 346666 59999998765554 44 788888753
No 134
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=99.92 E-value=6.2e-23 Score=254.53 Aligned_cols=330 Identities=12% Similarity=0.017 Sum_probs=237.1
Q ss_pred cccEeEEEeecCCCcEEEEEEeC-CC-----cEEEEECCCCceeeEeccCCCc------------------------EEE
Q 001403 433 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGAP------------------------VYS 482 (1084)
Q Consensus 433 ~~~V~~l~~s~d~~~l~l~s~~~-d~-----~i~vwd~~~g~~~~~~~~h~~~------------------------v~~ 482 (1084)
...|.+++|||||+ .|++++. |+ .|++||+.+++....+..+... +.+
T Consensus 36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 113 (741)
T 2ecf_A 36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD 113 (741)
T ss_dssp CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence 34689999999999 7888887 88 8999999999887776654332 677
Q ss_pred EeecccCCCcEEEEEecCCeEEEEECCCCC--ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 483 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
++| ++||++|++++. +.|++||+.++. ....+..+...+..++|||||++|++++ ++.|++||+.+++..
T Consensus 114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-----~~~i~~~d~~~g~~~ 185 (741)
T 2ecf_A 114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-----GRNLWVIDLASGRQM 185 (741)
T ss_dssp CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-----TTEEEEEETTTTEEE
T ss_pred eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-----CCcEEEEecCCCCEE
Confidence 888 457889998886 999999998873 4445566667899999999999999986 346999999998876
Q ss_pred eeeecccc-------------ccCceEEEEEcCCCCEEEEEECCC---------------------------------cE
Q 001403 561 RTYQGLQL-------------QHNSVSVVHFDTAKDQILAAGDDH---------------------------------VI 594 (1084)
Q Consensus 561 ~~~~~~~~-------------~~~~v~~~~~s~~~~~l~~~~~dg---------------------------------~i 594 (1084)
.....+.. ....+..++|+|||++|++++.|+ .|
T Consensus 186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 65544330 001147799999999999987665 78
Q ss_pred EEEECCC-CeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC-----CCeEEEEEcCCCCeeeeccccccceeEEEEcCCC
Q 001403 595 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS 668 (1084)
Q Consensus 595 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~ 668 (1084)
++||+.+ ++.........+...+..++| |||++|+++.. +..|++||+.+++.......+
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~------------- 331 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET------------- 331 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence 9999988 876554432123335788999 99999988764 456777776655322211100
Q ss_pred ceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCC
Q 001403 669 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG 748 (1084)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg 748 (1084)
.+
T Consensus 332 -----------------------------------------------------------------------------~~- 333 (741)
T 2ecf_A 332 -----------------------------------------------------------------------------SP- 333 (741)
T ss_dssp -----------------------------------------------------------------------------CS-
T ss_pred -----------------------------------------------------------------------------CC-
Confidence 00
Q ss_pred ceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-CCeEEEEEcC-Cce
Q 001403 749 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK 826 (1084)
Q Consensus 749 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~-~~~ 826 (1084)
.....+..++|+|||+++++++ +|.++||.+. +++
T Consensus 334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~ 370 (741)
T 2ecf_A 334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK 370 (741)
T ss_dssp -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence 0011234567788888666665 5666666654 344
Q ss_pred eEEEEcCCCCCeEEE-EEcCCCCcEE-EEEeCCC--eEEEEEcCC-ceeeeeecccccCEEEEEEcCCCCEEEEEeCC--
Q 001403 827 TILTIMPPSPTATSL-AFNPHDNNVI-AIGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD-- 899 (1084)
Q Consensus 827 ~~~~~~~~~~~i~~l-~~s~~d~~~l-a~g~~dg--~i~iwd~~~-~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-- 899 (1084)
...+..+...+..+ +|+| +++.| ++++.++ .++||++.. ++....+.+ ...+..++|||||++|+....+
T Consensus 371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~ 447 (741)
T 2ecf_A 371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS 447 (741)
T ss_dssp -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence 67777777788887 5999 67655 4555565 899999875 565667765 6678999999999999876544
Q ss_pred --CcEEEEeCCCC
Q 001403 900 --AQIFVWDVDGW 910 (1084)
Q Consensus 900 --g~I~iwd~~~~ 910 (1084)
..+.+|+...+
T Consensus 448 ~p~~~~l~~~~~~ 460 (741)
T 2ecf_A 448 TPPQIELFRANGE 460 (741)
T ss_dssp EEEEEEEEETTSC
T ss_pred CCCeEEEEEcCCC
Confidence 46899998654
No 135
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=7.3e-23 Score=253.21 Aligned_cols=385 Identities=11% Similarity=0.076 Sum_probs=254.1
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---------Cc
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV 593 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d---------g~ 593 (1084)
...+++|+|||+++++ +. ++.|++||+.+++....+..+......+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3567899999997755 32 5579999999998887777665211248999999999999998864 78
Q ss_pred EEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 594 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 594 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
+++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+
T Consensus 93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~------------- 157 (723)
T 1xfd_A 93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV------------- 157 (723)
T ss_dssp EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence 88999999886 33332 222234788999999999999887 799999998876544332211110
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceE
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL 751 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~ 751 (1084)
+..|.. -|-.. ..-...+.+++|||||+.|+.++.+ +.+.
T Consensus 158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~ 198 (723)
T 1xfd_A 158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP 198 (723)
T ss_dssp --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence 000000 00000 0011245789999999999988765 4566
Q ss_pred EeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE
Q 001403 752 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 831 (1084)
Q Consensus 752 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~ 831 (1084)
+|++.... + .+...+..+.|+++|.. ..+..|.+||+.+++....+
T Consensus 199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l 244 (723)
T 1xfd_A 199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM 244 (723)
T ss_dssp EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence 66543210 0 02234678888888863 12357999999998876666
Q ss_pred cCC------CCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCceeeeeeccc-ccCEE----EEEEcCCCCEEEE-
Q 001403 832 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEGH-SKRVT----GLVFSDALNILVS- 895 (1084)
Q Consensus 832 ~~~------~~~i~~l~~s~~d~~~la~g~~----dg~i~iwd~~~~~~~~~l~~h-~~~V~----~l~~spd~~~l~s- 895 (1084)
..+ ...+..++||| ||++|++... +..|++||+.+++....+..+ ...+. .++|||||+.|+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 323 (723)
T 1xfd_A 245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI 323 (723)
T ss_dssp CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence 654 56789999999 8888877653 358999999999877666543 34343 7899999998875
Q ss_pred -EeCCC------cEEEEe-CCCCceeeeeeeecCCCCccCCCCceE-EEEccCCCEEEE-EeC---CeEEEEEcCCcc--
Q 001403 896 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT-- 960 (1084)
Q Consensus 896 -~s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~~la~-~~d---~~i~vwd~~~~~-- 960 (1084)
+..++ .|.+|| ..++.......+ ..++. .+.. ++|||||+.|+. +.+ +.++||++....
T Consensus 324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l--~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~ 397 (723)
T 1xfd_A 324 RAIPQGGRGKFYHITVSSSQPNSSNDNIQSI--TSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF 397 (723)
T ss_dssp EEECCSSSSCEEEEEEECSSCCSSSCCCCBS--CCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred EecccCCCcceeEEEEEeccCCCCccceeEe--ecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence 45666 577777 344320000111 11222 2444 699999999987 444 679999986432
Q ss_pred eeeEeecC--CCCCEEEEEEccCCCEEEEEeCCC---cEEEEEcCCCceeEE
Q 001403 961 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG---TLSIHEASNLEVQCR 1007 (1084)
Q Consensus 961 ~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg---~i~vwd~~~~~~~~~ 1007 (1084)
....+... |...+..++|||||++|+.....- .+.+++..++..+..
T Consensus 398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~ 449 (723)
T 1xfd_A 398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFD 449 (723)
T ss_dssp CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEE
T ss_pred CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEE
Confidence 23332222 567789999999999988654332 244556655554433
No 136
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=99.91 E-value=5e-23 Score=254.68 Aligned_cols=314 Identities=9% Similarity=0.062 Sum_probs=225.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC---CeEEEEEcCCCCEEEEEeCC---
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVAYSK--- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~---~V~~v~fspdg~~las~~~d--- 409 (1084)
.+.+++|||||+++++ ..| ++|++||+.++.... ++.+|.. .|.+++|||||++||+++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~d---------g~i~~~d~~~g~~~~---~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~ 84 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQK---------GTVRLWNVETNTSTV---LIEGKKIESLRAIRYEISPDREYALFSYNVEPI 84 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSS---------SCEEEBCGGGCCCEE---EECTTTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred cccccEEcCCCcEEEE-eCC---------CCEEEEECCCCcEEE---EeccccccccccceEEECCCCCEEEEEecCccc
Confidence 5778999999998876 445 899999998876542 2455554 49999999999999999764
Q ss_pred ------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcE---
Q 001403 410 ------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--- 480 (1084)
Q Consensus 410 ------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v--- 480 (1084)
+.+.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++||+.+++.......+...+
T Consensus 85 ~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~ 160 (723)
T 1xfd_A 85 YQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (723)
T ss_dssp SSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecCCCCCceEC
Confidence 7889999999875 22223345556689999999999 5777764 799999999988776665544333
Q ss_pred ---------------EEEeecccCCCcEEEEEecCC----------------------------------eEEEEECCCC
Q 001403 481 ---------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKAWLYDSL 511 (1084)
Q Consensus 481 ---------------~~~~~~~~~~~~~l~s~s~dg----------------------------------~i~iwd~~~~ 511 (1084)
.+++| ++||+.|++++.|+ .|++||+.++
T Consensus 161 g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~ 238 (723)
T 1xfd_A 161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP 238 (723)
T ss_dssp EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred cccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCC
Confidence 67888 45778898887653 7999999887
Q ss_pred CceEeecCC------CCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce----EEEEEcCC
Q 001403 512 GARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA 581 (1084)
Q Consensus 512 ~~~~~~~~~------~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v----~~~~~s~~ 581 (1084)
+....+..+ ...+..++|+|||+++++.......+..|++||+.+++....+..+. ...+ ..++|+||
T Consensus 239 ~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~~~~spd 316 (723)
T 1xfd_A 239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD 316 (723)
T ss_dssp CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred ceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccCCCceEcCC
Confidence 755555543 55789999999999988776544456789999999998877665432 1223 37899999
Q ss_pred CCEEEE--EECCC------cEEEEE-CCCCeE--EEEEcCCCCCCCcce-EEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001403 582 KDQILA--AGDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRIKILETPES 646 (1084)
Q Consensus 582 ~~~l~~--~~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~~~~l~~~~~d---g~i~iwd~~~~ 646 (1084)
|+.|+. +..++ .|++|| ..++.. ...+... . ..+.. ++|+|||+.|+..+.+ +.+++|++...
T Consensus 317 g~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~ 394 (723)
T 1xfd_A 317 GRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTV 394 (723)
T ss_dssp SCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSS
T ss_pred CCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCC
Confidence 997775 44666 577777 444441 3333321 1 12333 6899999999877665 78999998643
Q ss_pred C--eeeeccc---cccceeEEEEcCCCceee
Q 001403 647 N--SVDAAGV---LSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 647 ~--~~~~~~~---~~~~i~~~~~~p~~~~~~ 672 (1084)
. ....+.. +...+..++++|++..++
T Consensus 395 ~~~~~~~l~~~~~~~~~~~~~~~spdg~~l~ 425 (723)
T 1xfd_A 395 GNFNRQCLSCDLVENCTYFSASFSHSMDFFL 425 (723)
T ss_dssp TTCCCBCSSTTSSSSCCCCEEEECTTSSEEE
T ss_pred CCCCcceecccccCCCCeEEEEECCCCCEEE
Confidence 2 2333333 455677788887665543
No 137
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.90 E-value=2.1e-21 Score=239.17 Aligned_cols=239 Identities=9% Similarity=-0.002 Sum_probs=167.5
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc-cceeeeeccc-----------------ccEeEEEeecCCCcEEEE
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVI 451 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~-~~~~~l~~h~-----------------~~V~~l~~s~d~~~l~l~ 451 (1084)
.+..+.|+ |+.+++++.++ | +||+.+++.+ . .+..|. ..|.+++|||| + .++
T Consensus 27 ~~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~ 96 (706)
T 2z3z_A 27 YVVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVV 96 (706)
T ss_dssp -CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEE
T ss_pred cCCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEE
Confidence 34557888 67788888888 8 9999999763 3 233333 46999999999 5 344
Q ss_pred EEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC-----CCceEeecCCCCe---
Q 001403 452 TCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG--- 523 (1084)
Q Consensus 452 s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~-----~~~~~~~~~~~~~--- 523 (1084)
.+. ++.|++||+.+++... +..+...+.+++|+| ||+.|+++ .++.|++|++.+ ++...........
T Consensus 97 ~~~-~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 97 LFT-QGGLVGFDMLARKVTY-LFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp EEE-TTEEEEEETTTTEEEE-EECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred EEE-CCEEEEEECCCCceEE-ccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 343 6999999999887644 445677788888854 77888884 789999999988 6655443333332
Q ss_pred -----------EEEEEEcCCCCEEEEEeeCC-----------------------------CCCeeEEEecCCCceEeeee
Q 001403 524 -----------CTRMAYSANGRRLFSCGTSK-----------------------------EGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 524 -----------i~~~~~s~d~~~l~~~~~~~-----------------------------~~~~~i~~wd~~~~~~~~~~ 563 (1084)
+.+++|+|||++|++++.+. ..+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 47899999999999987321 13578999999998876554
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEc-CCC--CCCCcceEEEec--CCCEEEEEE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIA 633 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~~~~l~~~~ 633 (1084)
.... +...+..++|+|||+.|++++.++ .|++||+.+++....+. ... ....+..++|+| ||++++++.
T Consensus 252 ~~~~-~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~ 330 (706)
T 2z3z_A 252 TGEP-KEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSR 330 (706)
T ss_dssp CCSC-TTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEEC
T ss_pred cCCC-CceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEc
Confidence 3211 226789999999999999987765 89999999984333332 111 111246789999 999888888
Q ss_pred CCCeEEEEEcC
Q 001403 634 NENRIKILETP 644 (1084)
Q Consensus 634 ~dg~i~iwd~~ 644 (1084)
.++.+++|.+.
T Consensus 331 ~~g~~~l~~~~ 341 (706)
T 2z3z_A 331 RDGWNHLYLYD 341 (706)
T ss_dssp TTSSCEEEEEE
T ss_pred cCCccEEEEEE
Confidence 88888887654
No 138
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=99.89 E-value=2.4e-21 Score=238.72 Aligned_cols=324 Identities=9% Similarity=0.076 Sum_probs=221.3
Q ss_pred EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee-eEeccCC-----------------CcEEEEeecccCCCcEEEEE
Q 001403 436 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHG-----------------APVYSLCPHAKENIHFIFSI 497 (1084)
Q Consensus 436 V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~-~~~~~h~-----------------~~v~~~~~~~~~~~~~l~s~ 497 (1084)
+..+.|+ |+ .+++++.|+ | +||+.+|+.+ ..+..|. ..|.+++|++ |+ .++.+
T Consensus 28 ~~~~~w~--g~--~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~sp--d~-~~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GD--NYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAG--RG-LVVLF 98 (706)
T ss_dssp CTTCEEE--TT--EEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETT--TT-EEEEE
T ss_pred CCCCcCc--CC--eEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECC--CC-eEEEE
Confidence 4557888 55 466666677 8 9999999873 4443333 4689999966 43 44444
Q ss_pred ecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-----ceEeeeeecccc----
Q 001403 498 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-----GAIKRTYQGLQL---- 568 (1084)
Q Consensus 498 s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-----~~~~~~~~~~~~---- 568 (1084)
.++.|++||+.+++.. .+..+...+..++|+|||++|+++. ++.|++||+.+ ++.......+..
T Consensus 99 -~~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~SpdG~~la~~~-----~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~ 171 (706)
T 2z3z_A 99 -TQGGLVGFDMLARKVT-YLFDTNEETASLDFSPVGDRVAYVR-----NHNLYIARGGKLGEGMSRAIAVTIDGTETLVY 171 (706)
T ss_dssp -ETTEEEEEETTTTEEE-EEECCTTCCTTCEECTTSSEEEEEE-----TTEEEEEECBCTTSCCCCCEESCSCCBTTEEE
T ss_pred -ECCEEEEEECCCCceE-EccCCcccccCCcCCCCCCEEEEEE-----CCeEEEEecCcccccCCCcEEeccCCCCCeEc
Confidence 4599999999876543 3344455678899999999999864 56799999998 776655444330
Q ss_pred -------ccCceEEEEEcCCCCEEEEEE---------------------------------CCCcEEEEECCCCeEEEEE
Q 001403 569 -------QHNSVSVVHFDTAKDQILAAG---------------------------------DDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 569 -------~~~~v~~~~~s~~~~~l~~~~---------------------------------~dg~i~iwd~~~~~~~~~~ 608 (1084)
+...+.+++|+|||++|++++ .+..|++||+.+++.....
T Consensus 172 g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~ 251 (706)
T 2z3z_A 172 GQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQ 251 (706)
T ss_dssp SSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECC
T ss_pred ccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeec
Confidence 001147899999999999987 4578999999998876554
Q ss_pred cCCCCCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEec
Q 001403 609 DAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 683 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~ 683 (1084)
....+...+..++|+|||+.|++++.++ .|++||..+++....+.
T Consensus 252 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~------------------------------ 301 (706)
T 2z3z_A 252 TGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLF------------------------------ 301 (706)
T ss_dssp CCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEE------------------------------
T ss_pred cCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEE------------------------------
Confidence 3323333578999999999999887665 78888876552211110
Q ss_pred CCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcC
Q 001403 684 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 684 ~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~ 763 (1084)
.....
T Consensus 302 -----------------------------------------------------------~~~~~---------------- 306 (706)
T 2z3z_A 302 -----------------------------------------------------------VETDK---------------- 306 (706)
T ss_dssp -----------------------------------------------------------EEECS----------------
T ss_pred -----------------------------------------------------------EccCC----------------
Confidence 00000
Q ss_pred cccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC--CCCEEEEEe-CCeEEEEEcC-CceeEEEEcCCCCCeE
Q 001403 764 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVISLYIVM-TFKTILTIMPPSPTAT 839 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--dg~~l~~~s-dg~i~vwd~~-~~~~~~~~~~~~~~i~ 839 (1084)
.....+.+++|+| ||+++++++ ++.+++|++. +++.+..+..+...+.
T Consensus 307 ----------------------------~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 307 ----------------------------HYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp ----------------------------SCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred ----------------------------CeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 0111234567888 888777776 5777788776 6677777777777787
Q ss_pred E-EEEcCCCCcEEEEE-eCCC----eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC
Q 001403 840 S-LAFNPHDNNVIAIG-MDDS----TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----AQIFVWDVDG 909 (1084)
Q Consensus 840 ~-l~~s~~d~~~la~g-~~dg----~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d----g~I~iwd~~~ 909 (1084)
. ++|+| +++.|+.+ ..++ .|+.||+.+++ ...+. |...+.+++|||||++++..+.+ +.|++||+.+
T Consensus 359 ~~~~~sp-dg~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d~~~ 435 (706)
T 2z3z_A 359 NFAGFDP-KGTRLYFESTEASPLERHFYCIDIKGGK-TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTNIGK 435 (706)
T ss_dssp EEEEECT-TSSEEEEEESSSCTTCBEEEEEETTCCC-CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEESSS
T ss_pred eeeEEcC-CCCEEEEEecCCCCceEEEEEEEcCCCC-ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcEEEEEECCC
Confidence 6 89999 77666554 4444 67777877765 34444 67789999999999999876544 5699999988
Q ss_pred Cc
Q 001403 910 WG 911 (1084)
Q Consensus 910 ~~ 911 (1084)
++
T Consensus 436 ~~ 437 (706)
T 2z3z_A 436 GS 437 (706)
T ss_dssp CE
T ss_pred Ce
Confidence 65
No 139
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.89 E-value=1.9e-20 Score=207.30 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=200.6
Q ss_pred EEEcCCCcee-eeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEc
Q 001403 340 MDFHPVQHTL-LLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY 417 (1084)
Q Consensus 340 v~~spdg~~l-as~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~-dg~v~iwd~ 417 (1084)
..|++++.++ ++...+ +.|.+||..++...... ..+...+ +++|+|||+++++++. ++.|.+||+
T Consensus 3 ~~~~~~~~~~~v~~~~~---------~~v~~~d~~~~~~~~~~---~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~ 69 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHL---------RRISFFSTDTLEILNQI---TLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET 69 (331)
T ss_dssp ----CCCCEEEEEEGGG---------TEEEEEETTTCCEEEEE---ECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred eeEcCCCCEEEEEecCC---------CeEEEEeCcccceeeeE---EccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence 4566766664 444444 89999999887664432 2345566 9999999997777765 889999999
Q ss_pred cCCcc-ccceeeeecccccEeEEEeecCCCcEEEEEEeCC-C--cEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 418 HGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 418 ~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-~--~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+||+.+++.+..+..+ ....+++|+| +|++
T Consensus 70 ~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp--dg~~ 141 (331)
T 3u4y_A 70 QLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP--NGNG 141 (331)
T ss_dssp SSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT--TSSC
T ss_pred CCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC--CCCE
Confidence 99875 33 4555666665599999999 56655544 3 8999999999988887654 4468899955 6654
Q ss_pred E-EEEecCCe-EEEEECCCCCceE----eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE---eeeee
Q 001403 494 I-FSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQ 564 (1084)
Q Consensus 494 l-~s~s~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~---~~~~~ 564 (1084)
+ ++...++. |.+|+++...... ...........++|+|||++++++.. .++.|.+||+.+++. +..+.
T Consensus 142 l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 142 LILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp EEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCEEEEEEE
T ss_pred EEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccceeeecc
Confidence 4 45556688 9999998655432 22233456789999999998777653 366799999999887 66665
Q ss_pred ccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeE--EEEEcCC----CC-CCCcceEEEecCCCEEEEEEC-C
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLAVIAN-E 635 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~~~~l~~~~~-d 635 (1084)
.. ..+..++|+|+++++++++ .++.|.+||..+++. +..+... .. ......++|+|||++|++++. +
T Consensus 219 ~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~ 294 (331)
T 3u4y_A 219 TN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANIS 294 (331)
T ss_dssp CS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTT
T ss_pred CC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCC
Confidence 43 4678899999999877655 578899999999887 4444322 11 111245899999998876665 5
Q ss_pred CeEEEEEcCCC
Q 001403 636 NRIKILETPES 646 (1084)
Q Consensus 636 g~i~iwd~~~~ 646 (1084)
+.|.+||+...
T Consensus 295 ~~v~v~d~~~~ 305 (331)
T 3u4y_A 295 RELKVFTISGK 305 (331)
T ss_dssp TEEEEEETTSC
T ss_pred CcEEEEEecCC
Confidence 69999999865
No 140
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.89 E-value=1.3e-20 Score=210.66 Aligned_cols=280 Identities=10% Similarity=0.059 Sum_probs=214.5
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~ 413 (1084)
..+..++|||||++++++..+-..+ ..++.|.+||..+........ ....+..++|+|||++++++ ..++.|.
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~--~~~~~v~~~d~~~~~~~~~~~----~~~~~~~~~~s~dg~~l~v~~~~~~~v~ 114 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKL--DKGGVVYRLDPVTLEVTQAIH----NDLKPFGATINNTTQTLWFGNTVNSAVT 114 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTT--EESEEEEEECTTTCCEEEEEE----ESSCCCSEEEETTTTEEEEEETTTTEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCC--CCCccEEEEcCCCCeEEEEEe----cCCCcceEEECCCCCEEEEEecCCCEEE
Confidence 4788999999999998865431100 113799999998876544332 23457889999999966655 5578999
Q ss_pred EEEccCCccccceeeeecccc---------cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEe
Q 001403 414 LYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~---------~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~ 484 (1084)
+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+||..+++.+..+..+...+..++
T Consensus 115 ~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 191 (353)
T 3vgz_A 115 AIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLA 191 (353)
T ss_dssp EEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCE
T ss_pred EEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEE
Confidence 99999987655 3333322 27889999999952222224588999999999999988876666678888
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
|+ ++++++++++.++.|.+||..+.+....+.. +...+..++|+|+|++++++.. +++.|.+||..+++.+
T Consensus 192 ~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~v~~~d~~~~~~~ 266 (353)
T 3vgz_A 192 LD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---KAAEVLVVDTRNGNIL 266 (353)
T ss_dssp EE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---SSSEEEEEETTTCCEE
T ss_pred EC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---CCCEEEEEECCCCcEE
Confidence 85 4778999999999999999998877665554 3446788999999998887753 2577999999999988
Q ss_pred eeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 561 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 561 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
..+.... ...++|+|+++++++++ .++.|.+||..+++.+..+.... .+..++|+|+|++++++..++
T Consensus 267 ~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 267 AKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECTTSCEEEEEEECC
T ss_pred EEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcCCCCEEEEEEccc
Confidence 8877543 25689999999777665 68999999999999998887543 368999999999887776653
No 141
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=2.6e-20 Score=207.31 Aligned_cols=206 Identities=9% Similarity=0.148 Sum_probs=144.9
Q ss_pred CccEEEecCCCCEEEEEe--CCeEEEEEc---CCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCC-c
Q 001403 796 AVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-S 868 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--dg~i~vwd~---~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~-~ 868 (1084)
.+..++|+|+|+++++++ ++.|.+||+ .+++....+..+ ..+.+++|+| ++++|++++ .++.|++||+.+ +
T Consensus 85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~-dg~~l~~~~~~~~~v~~~d~~~~~ 162 (343)
T 1ri6_A 85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP-DNRTLWVPALKQDRICLFTVSDDG 162 (343)
T ss_dssp CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT-TSSEEEEEEGGGTEEEEEEECTTS
T ss_pred CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC-CCCEEEEecCCCCEEEEEEecCCC
Confidence 456788888888776665 578999998 444555555533 4588999999 788777776 899999999987 6
Q ss_pred eeee----eecc-cccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 869 EVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 869 ~~~~----~l~~-h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
+... .+.. ....+.+++|+|++++|+.++ .++.|.+|++.. ++......+............+..++|+|||
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 163 HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred ceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 5432 2222 334788999999999776555 789999999954 4433222333222211111256789999999
Q ss_pred CEEEEE--eCCeEEEEEcC--Cc--ceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEc--CCCcee
Q 001403 941 TRFLLV--HETHLAIYEAE--EL--TCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SNLEVQ 1005 (1084)
Q Consensus 941 ~~la~~--~d~~i~vwd~~--~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~--~~~~~~ 1005 (1084)
++|+++ .++.|.+||+. ++ +.+..+. .+. .+.+++|+|||++|++++ .++.|.+|++ .++++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d~~~g~~~ 314 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQP-TET-QPRGFNVDHSGKYLIAAGQKSHHISVYEIVGEQGLLH 314 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEE-CSS-SCCCEEECTTSSEEEEECTTTCEEEEEEEETTTTEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeec-CCC-ccceEEECCCCCEEEEecCCCCeEEEEEEcCCCceee
Confidence 988864 57899999998 33 3333322 233 388999999999998888 5799999955 466543
No 142
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.88 E-value=2.3e-20 Score=207.12 Aligned_cols=279 Identities=13% Similarity=0.092 Sum_probs=205.0
Q ss_pred CEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeeccccccceeE
Q 001403 583 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRK 661 (1084)
Q Consensus 583 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~ 661 (1084)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.+++.+..+.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~---- 77 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBT----
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCc----
Confidence 47888999999999999999999888754411126789999999876554 4578999999887654432210000
Q ss_pred EEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeE
Q 001403 662 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI 741 (1084)
Q Consensus 662 ~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l 741 (1084)
.
T Consensus 78 -----------------------------------------------------------------~-------------- 78 (337)
T 1pby_B 78 -----------------------------------------------------------------E-------------- 78 (337)
T ss_dssp -----------------------------------------------------------------T--------------
T ss_pred -----------------------------------------------------------------c--------------
Confidence 0
Q ss_pred EEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEE---------
Q 001403 742 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--------- 812 (1084)
Q Consensus 742 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~--------- 812 (1084)
.+...+.+++|+|||++++++
T Consensus 79 --------------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~ 108 (337)
T 1pby_B 79 --------------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELT 108 (337)
T ss_dssp --------------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSS
T ss_pred --------------------------------------------------cccccccceEECCCCCEEEEEecccccccc
Confidence 001123345566666555555
Q ss_pred ----eCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 813 ----SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 813 ----sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
.++.|.+||+.+++....+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..+.|+|
T Consensus 109 ~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~ 183 (337)
T 1pby_B 109 HFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQP 183 (337)
T ss_dssp CEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCC
T ss_pred cccccCceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCC
Confidence 358899999999988887764 45678899999 88878777 688999999999988777654311 1237899
Q ss_pred CCCEEEEEeCCC------------------------cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 889 ALNILVSSGGDA------------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 889 d~~~l~s~s~dg------------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
|++.|+..+.++ .|.+||+.+++... ..+.. +. ..+..++|+|||++++
T Consensus 184 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~---~~---~~~~~~~~s~dg~~l~ 256 (337)
T 1pby_B 184 DVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRI---MD---VFYFSTAVNPAKTRAF 256 (337)
T ss_dssp BCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEE---CS---SCEEEEEECTTSSEEE
T ss_pred CccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCC---CC---CceeeEEECCCCCEEE
Confidence 998776554332 46899999977542 11211 11 2577899999999999
Q ss_pred EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 945 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++ ++.|.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 257 ~~-~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 257 GA-YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EE-ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred Ee-CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence 88 79999999999988776543 3467899999999999999999999999999999887776
No 143
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=99.88 E-value=4.4e-20 Score=205.40 Aligned_cols=265 Identities=14% Similarity=0.153 Sum_probs=186.1
Q ss_pred ceEEEEEcCC-ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC-CEEEEEEcc--CCccccceeeeecccccEeEEE
Q 001403 365 RNFKVWDIGA-CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYH--GGSDARQQLEIDAHVGNVNDLA 440 (1084)
Q Consensus 365 ~~v~iwd~~~-~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d-g~v~iwd~~--~~~~~~~~~~l~~h~~~V~~l~ 440 (1084)
+.|++||+.. +...... ...|...+.+++|+|||++|++++.+ +.|.+|++. +++. .....+..+. .+.+++
T Consensus 15 ~~v~~~~~~~~~~~~~~~--~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~ 90 (343)
T 1ri6_A 15 QQIHVWNLNHEGALTLTQ--VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGAL-TFAAESALPG-SLTHIS 90 (343)
T ss_dssp TEEEEEEECTTSCEEEEE--EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCE-EEEEEEECSS-CCSEEE
T ss_pred CeEEEEEECCCCcEEEee--eEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCce-eeccccccCC-CCcEEE
Confidence 9999999963 2211111 22367789999999999999999876 899999998 5542 2222344333 789999
Q ss_pred eecCCCcEEEEEE-eCCCcEEEEECC---CCceeeEeccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCC-CCce
Q 001403 441 FSAPCKQISVITC-GDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDS-LGAR 514 (1084)
Q Consensus 441 ~s~d~~~l~l~s~-~~d~~i~vwd~~---~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~-~~~~ 514 (1084)
|+|+++ +++++ ..++.|.+||+. +++.+..+..+ ..+.+++|++ +++++++++ .++.|.+||+.. +...
T Consensus 91 ~s~dg~--~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~~~~~~v~~~d~~~~~~~~ 165 (343)
T 1ri6_A 91 TDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANISP--DNRTLWVPALKQDRICLFTVSDDGHLV 165 (343)
T ss_dssp ECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEECT--TSSEEEEEEGGGTEEEEEEECTTSCEE
T ss_pred EcCCCC--EEEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEECC--CCCEEEEecCCCCEEEEEEecCCCcee
Confidence 999999 55544 458899999994 44455555544 3577888854 667777777 899999999987 4332
Q ss_pred E----eec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC--ceE--eeeeeccc---cccCceEEEEEcCCC
Q 001403 515 V----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--KRTYQGLQ---LQHNSVSVVHFDTAK 582 (1084)
Q Consensus 515 ~----~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~--~~~~~~~~---~~~~~v~~~~~s~~~ 582 (1084)
. ... .....+..++|+|+|+++++++. .++.|.+|++.. ++. ........ .....+..++|+|++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg 242 (343)
T 1ri6_A 166 AQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDG 242 (343)
T ss_dssp EEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTS
T ss_pred eecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCC
Confidence 1 222 23447888999999998877652 266799999853 433 22222111 012356789999999
Q ss_pred CEEEEEE-CCCcEEEEECC--C--CeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcC
Q 001403 583 DQILAAG-DDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP 644 (1084)
Q Consensus 583 ~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~ 644 (1084)
++++++. .++.|.+||+. + .+.+..+..... +..++|+|+|++|++++ .++.+.+|++.
T Consensus 243 ~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 243 RHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ---PRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp SEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS---CCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred CEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc---cceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 9888654 78999999998 3 344445544332 68899999999988888 57999999554
No 144
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=99.87 E-value=1.1e-19 Score=201.23 Aligned_cols=197 Identities=10% Similarity=0.015 Sum_probs=143.6
Q ss_pred EEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECCCCCc-eEe
Q 001403 439 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGA-RVD 516 (1084)
Q Consensus 439 l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~~~~~-~~~ 516 (1084)
..|.+++.. ++++++.++.|.+||+.+++.+..+..+...+ .++|++ +++++++++. ++.|.+||+.+++. ...
T Consensus 3 ~~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~--dg~~l~~~~~~~~~i~~~d~~~~~~~~~~ 78 (331)
T 3u4y_A 3 AMFQTTSNF-GIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITS--DCSNVVVTSDFCQTLVQIETQLEPPKVVA 78 (331)
T ss_dssp ----CCCCE-EEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECS--SSCEEEEEESTTCEEEEEECSSSSCEEEE
T ss_pred eeEcCCCCE-EEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcC--CCCEEEEEeCCCCeEEEEECCCCceeEEe
Confidence 356666664 67888889999999999999988887766667 888854 6676666555 89999999998887 555
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCc-E
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHV-I 594 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~-i 594 (1084)
+..+..+..+++|+|+|+++++... ..+...|.+||+.+++.+..+.... ....++|+|++++++++ ..++. |
T Consensus 79 ~~~~~~~~~~~~~s~dg~~l~~~~~-~~~~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 79 IQEGQSSMADVDITPDDQFAVTVTG-LNHPFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDRSSANTV 153 (331)
T ss_dssp EEECSSCCCCEEECTTSSEEEECCC-SSSSCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEETTTTEE
T ss_pred cccCCCCccceEECCCCCEEEEecC-CCCcccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEecCCCceE
Confidence 6555555555999999999994332 2122389999999999888776544 56899999999866654 56688 9
Q ss_pred EEEECCCCeEE-----EEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCC
Q 001403 595 KIWDMNKVQLL-----TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESN 647 (1084)
Q Consensus 595 ~iwd~~~~~~~-----~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 647 (1084)
.+|++.....+ ..+.. ......++|+|+|++++++. .++.|.+||+.+++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 209 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNFAFVANLIGNSIGILETQNPE 209 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTT
T ss_pred EEEEECCCCcEeecCCccccC---CCCccceEECCCCCEEEEEeCCCCeEEEEECCCCc
Confidence 99998754332 22221 12367899999998665555 57889999977653
No 145
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=99.87 E-value=1.5e-19 Score=202.02 Aligned_cols=248 Identities=13% Similarity=0.116 Sum_probs=195.0
Q ss_pred CCeEEEEEcCCCCEEEEEeC-------CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYS-------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 461 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~-------dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~v 461 (1084)
..+..++|+|||+++++++. ++.|.+||..+++.+.. +. ....+..++|+|+|+. ++++...++.|.+
T Consensus 41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~-~~~~~~~~~~s~dg~~-l~v~~~~~~~v~~ 115 (353)
T 3vgz_A 41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA---IH-NDLKPFGATINNTTQT-LWFGNTVNSAVTA 115 (353)
T ss_dssp SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE---EE-ESSCCCSEEEETTTTE-EEEEETTTTEEEE
T ss_pred cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE---Ee-cCCCcceEEECCCCCE-EEEEecCCCEEEE
Confidence 56889999999999988874 56899999999876553 32 2345788999999995 4555666899999
Q ss_pred EECCCCceeeEeccCCCc---------EEEEeecccCCCcEEEEEe--cCCeEEEEECCCCCceEeecCCCCeEEEEEEc
Q 001403 462 WDAVTGSRTYSFEGHGAP---------VYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS 530 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~---------v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s 530 (1084)
||..+++.+..+..+... +.+++|++ +++.+++++ .++.|.+||..+.+....+......+..++|+
T Consensus 116 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s 193 (353)
T 3vgz_A 116 IDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADD--ATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALD 193 (353)
T ss_dssp EETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEET--TTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEE
T ss_pred EeCCCCeeEEEEecCCCccccccCCCCCceEEECC--CCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEEC
Confidence 999999998888765432 67888855 566666665 47899999999888777776556567889999
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc-ccCceEEEEEcCCCCEEEEEEC-CCcEEEEECCCCeEEEEE
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~ 608 (1084)
|+|++++++.. ++.|.+||..+++....+..... +...+..++|+|+++++++++. ++.|.+||..+++.+..+
T Consensus 194 ~dg~~l~~~~~----~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 269 (353)
T 3vgz_A 194 SEGKRLYTTNA----DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKV 269 (353)
T ss_dssp TTTTEEEEECT----TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEcC----CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999998864 56799999999998887765221 2256788999999998877665 599999999999998888
Q ss_pred cCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeee
Q 001403 609 DAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDA 651 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~ 651 (1084)
..... ..++|+|++++++++. .++.|.+||..+++.+..
T Consensus 270 ~~~~~----~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~ 309 (353)
T 3vgz_A 270 AAPES----LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKT 309 (353)
T ss_dssp ECSSC----CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred EcCCC----ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEE
Confidence 75432 5799999999776666 689999999988755543
No 146
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=99.86 E-value=6.4e-20 Score=203.50 Aligned_cols=280 Identities=11% Similarity=0.060 Sum_probs=205.1
Q ss_pred ceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCC-CeEEEEEcCCCCEEEE-EeCCCEEEEEEccCCcccc
Q 001403 347 HTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYHGGSDAR 424 (1084)
Q Consensus 347 ~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~-~V~~v~fspdg~~las-~~~dg~v~iwd~~~~~~~~ 424 (1084)
++|+++..| +.|.+||..++...... ..++.. .+..++|+|||+++++ +..++.|.+||+.+++.+.
T Consensus 2 ~~~v~~~~~---------~~v~~~d~~~~~~~~~~--~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~ 70 (337)
T 1pby_B 2 DYILAPARP---------DKLVVIDTEKMAVDKVI--TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLG 70 (337)
T ss_dssp EEEEEEETT---------TEEEEEETTTTEEEEEE--ECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEE
T ss_pred cEEEEcCCC---------CeEEEEECCCCcEEEEE--EcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEe
Confidence 467777666 99999999887654332 122222 4888999999987655 4567899999999987654
Q ss_pred ceeeeec---ccccEeEEEeecCCCcEEEEEEe------------CCCcEEEEECCCCceeeEeccCCCcEEEEeecccC
Q 001403 425 QQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 489 (1084)
Q Consensus 425 ~~~~l~~---h~~~V~~l~~s~d~~~l~l~s~~------------~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~ 489 (1084)
.+ .... |...+.+++|+|||+ .+++++ .++.|.+||+.+++.+..+.. ...+.+++|+ +
T Consensus 71 ~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s--~ 144 (337)
T 1pby_B 71 RI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITMLAWA--R 144 (337)
T ss_dssp EE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCEEEC--T
T ss_pred eE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCcceeEEC--C
Confidence 22 1111 233678899999999 555554 579999999999988877764 4456778884 4
Q ss_pred CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCC---------------------ee
Q 001403 490 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE---------------------SF 548 (1084)
Q Consensus 490 ~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~---------------------~~ 548 (1084)
++++++++ ++.|.+||+.+++....+..... ...+.|+|||+.++..+... +. ..
T Consensus 145 dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (337)
T 1pby_B 145 DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESS-GVMATPFYTARKDIDPADPTAYRTG 220 (337)
T ss_dssp TSSCEEEE--SSSEEEEETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTT-TEEEEEEEEEBTTSCTTSGGGEEEE
T ss_pred CCCEEEEe--CCeEEEEECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCC-Cceeeeeeccccccccccccccccc
Confidence 66777777 68999999998776655544331 01237899998776554211 01 14
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
|.+||+.+++.. .+.... +...+..++|+|++++++++ ++.|++||+.+++.+..+.... .+.+++|+|+|++
T Consensus 221 v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~ 293 (337)
T 1pby_B 221 LLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVSTDGST 293 (337)
T ss_dssp EEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEECTTSCE
T ss_pred eEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEECCCCCE
Confidence 789999998875 322211 12567889999999999988 7999999999999988887543 3689999999999
Q ss_pred EEEEECCCeEEEEEcCCCCeeeeccc
Q 001403 629 LAVIANENRIKILETPESNSVDAAGV 654 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~~~~~~~~~~ 654 (1084)
+++++.++.|.+||+.+++.+..+..
T Consensus 294 l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 294 VWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 99998899999999999887766653
No 147
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.86 E-value=9.2e-21 Score=233.88 Aligned_cols=378 Identities=12% Similarity=0.027 Sum_probs=243.8
Q ss_pred EEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC---------CCcEEE
Q 001403 526 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI 596 (1084)
Q Consensus 526 ~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~---------dg~i~i 596 (1084)
.++|+|||++++.. . ++.|++||+.+++....+.++......+.+++|||||++|++++. ++.|++
T Consensus 20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~ 94 (719)
T 1z68_A 20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI 94 (719)
T ss_dssp CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence 67899999665543 2 557999999999988777765411124889999999999999876 789999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
||+.+++.+...... ..+..++|||||+.|+.+. ++.|++|++.+++..........
T Consensus 95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~------------------- 151 (719)
T 1z68_A 95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRE------------------- 151 (719)
T ss_dssp EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBT-------------------
T ss_pred EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCc-------------------
Confidence 999998863111111 2478899999999999986 68999999987755432210000
Q ss_pred CceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-CceEEeec
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW 755 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i~vw~~ 755 (1084)
..+..|.. . .++.-+ -.....+++|||||+.|+.++.+ +.+.+|.+
T Consensus 152 --------------~~v~~g~~-~--~v~~ee----------------~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~ 198 (719)
T 1z68_A 152 --------------NKIFNGIP-D--WVYEEE----------------MLATKYALWWSPNGKFLAYAEFNDTDIPVIAY 198 (719)
T ss_dssp --------------TTEEESSC-C--HHHHHH----------------TTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred --------------CCeEcccc-c--ceeeee----------------cccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence 00000000 0 000000 00122468999999999988765 55555543
Q ss_pred cCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeE--EE---
Q 001403 756 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI--LT--- 830 (1084)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~--~~--- 830 (1084)
..... .+...+..+.+...|.. .....|++||+.+++.. ..
T Consensus 199 ~~~~~-------------------------------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~ 244 (719)
T 1z68_A 199 SYYGD-------------------------------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV 244 (719)
T ss_dssp EECCS-------------------------------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred eccCC-------------------------------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence 22100 02223444555444431 11347999999988753 12
Q ss_pred ---EcCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEE----cCCceeeeee----cccccCEE-----EEEEcCCC
Q 001403 831 ---IMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL 890 (1084)
Q Consensus 831 ---~~~~~~~i~~l~~s~~d~~~la~g~~d----g~i~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~spd~ 890 (1084)
+.++...+..++||| |++++++.... ..|.+|| ..+++....+ .+|.+.+. .++|+|||
T Consensus 245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg 323 (719)
T 1z68_A 245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA 323 (719)
T ss_dssp CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence 335777899999999 68887775433 2588999 8888877666 46777776 88999999
Q ss_pred CEEEE--EeCCC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeC-----CeEEEEEcCC--
Q 001403 891 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE-- 958 (1084)
Q Consensus 891 ~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~~i~vwd~~~-- 958 (1084)
+.|+. +..+| .|.+||+.+++.. .+. .+. ..+..+.++ +++.|+. +.+ +..++|.+..
T Consensus 324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt---~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~ 393 (719)
T 1z68_A 324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT---SGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS 393 (719)
T ss_dssp SCEEEEEECTTSCEEEEEESSCSTTCE---ECS---CSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred CeEEEEEEccCCceEEEEEECCCCceE---ecc---cCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence 96654 44555 5777787775521 121 111 146777778 8888777 443 6788887753
Q ss_pred cce-eeEee---cCCCCCEEEEEEccCCCEEEEE-eCC--CcEEEEEcCCCceeEEec
Q 001403 959 LTC-LKQWF---PISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 959 ~~~-~~~~~---~~h~~~v~~l~fs~dg~~l~t~-~~d--g~i~vwd~~~~~~~~~~~ 1009 (1084)
+.. ...+. .+|...+..+.|||||++++.. +.+ ..+.+||+.+++....+.
T Consensus 394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 421 12221 1256678899999999887754 333 468899999887654443
No 148
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.86 E-value=4.3e-20 Score=200.54 Aligned_cols=253 Identities=15% Similarity=0.120 Sum_probs=185.0
Q ss_pred cceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccC-Cccccceeeeecc-cccEeEEEe
Q 001403 364 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAH-VGNVNDLAF 441 (1084)
Q Consensus 364 ~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~-~~~~~~~~~l~~h-~~~V~~l~~ 441 (1084)
+++|++||+.++.... +..|...|.+++|+|||++|++++ ++.|.+||+.+ ++... ....| ...|.+++|
T Consensus 21 ~~~i~~~d~~~~~~~~----~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~ 92 (297)
T 2ojh_A 21 RSSIEIFNIRTRKMRV----VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEK---VDTGFATICNNDHGI 92 (297)
T ss_dssp CEEEEEEETTTTEEEE----EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEE---CCCTTCCCBCSCCEE
T ss_pred ceeEEEEeCCCCceee----eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceE---eccccccccccceEE
Confidence 3999999998766442 334788999999999999999987 77899999998 76443 23344 467899999
Q ss_pred ecCCCcEEEEEEe--CCCcEEE--EECCCCceeeEeccCCCcEEEEeecccCCCcEEE-EEecCCeEEEEECCCC-CceE
Q 001403 442 SAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSL-GARV 515 (1084)
Q Consensus 442 s~d~~~l~l~s~~--~d~~i~v--wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~-s~s~dg~i~iwd~~~~-~~~~ 515 (1084)
+||++ ++++++ .++.+.| |+..++. ...+..+. .+..++|++ +++.|+ +++.++.+++|+++.. ....
T Consensus 93 spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~~~~~~~~~l~~~~~~~~~~~ 166 (297)
T 2ojh_A 93 SPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYCGIRDQVFDIYSMDIDSGVET 166 (297)
T ss_dssp CTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred CCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEEECCCCceEEEEEECCCCcce
Confidence 99999 677777 3344455 4555554 44454443 488888855 666666 7889999999997543 3445
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceEeeeeeccccccCceEEEEEcCCCCEEEEEECC---
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--- 591 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--- 591 (1084)
.+..+...+.+++|+|+|+.+++++.. ++.+.+|++. .+.....+..+. ..+..++|+|++++|++++.+
T Consensus 167 ~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~ 240 (297)
T 2ojh_A 167 RLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDWFPHPSPSGDKVVFVSYDADV 240 (297)
T ss_dssp ECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEEEEEECTTSSEEEEEEEETTC
T ss_pred EcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccCCeEECCCCCEEEEEEcCCCC
Confidence 556667789999999999998877631 3346666654 344455666555 678899999999999988765
Q ss_pred --------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 592 --------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 592 --------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
+.|++||+.+++.........+...+..++|+|++++|++++.+.
T Consensus 241 ~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 241 FDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp CSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred CcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 569999999887644443222233578899999999999887753
No 149
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.85 E-value=7.6e-19 Score=195.69 Aligned_cols=248 Identities=12% Similarity=0.153 Sum_probs=170.1
Q ss_pred CCCCccEEEecCCCCEEEEEe---CCeEEEEEcCCce--eEEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcC
Q 001403 793 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR 866 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~ 866 (1084)
+...+..++|+|||+++++.. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345677899999999444443 3789999998766 3444455667788999999 888888777 78999999996
Q ss_pred C-c--eeeeeecc---------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCceeeeeeeecCCCCccCCCCceE
Q 001403 867 S-S--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 867 ~-~--~~~~~l~~---------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
. + +.+..+.. +...+.+++|+|||+++++...++.|.+|++. +++......+....+ ..+..
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~ 191 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH 191 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence 3 3 23333321 12348899999999977777778999999998 554333222222222 24678
Q ss_pred EEEccCCCEEEEE--eCCeEEEEEcCC--cceeeE-eecCCC------CCEEEEEEccCCCEEE-EEeCCCcEEEEEcCC
Q 001403 934 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCLKQ-WFPISS------VPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1001 (1084)
Q Consensus 934 ~~~s~dg~~la~~--~d~~i~vwd~~~--~~~~~~-~~~~h~------~~v~~l~fs~dg~~l~-t~~~dg~i~vwd~~~ 1001 (1084)
++|+|||++++++ .++.|.+|++.. ++.... ...... ..+..++|+|||++|+ +...++.|.+|++..
T Consensus 192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 9999999987774 567899999874 443211 111111 4588999999999884 555689999999973
Q ss_pred C---ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCC-CcEEEEcCCCCCC
Q 001403 1002 L---EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGD 1057 (1084)
Q Consensus 1002 ~---~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-g~v~vw~~~~~~~ 1057 (1084)
. +.+..+. . ++ -.+..++|+| ||++|++++.+ +.|.+|++....+
T Consensus 272 ~g~~~~~~~~~------~--~~--~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg 320 (347)
T 3hfq_A 272 DGHLTLIQQIS------T--EG--DFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSG 320 (347)
T ss_dssp GGCEEEEEEEE------C--SS--SCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCcEEEeEEEe------c--CC--CCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCC
Confidence 3 2232222 1 01 2345789999 58888887765 8999997754433
No 150
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.85 E-value=2.8e-18 Score=192.29 Aligned_cols=306 Identities=12% Similarity=0.118 Sum_probs=201.2
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCC--ccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC----CEEEE
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA--CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK----HIVQL 414 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~--~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d----g~v~i 414 (1084)
+..+...++.+|.+.... ++.|.+|++.. +...... .. +...+..++|+|||++|++++.+ +.|.+
T Consensus 8 ~~~~~~~~~~vg~y~~~~-----~~~i~~~~~d~~~g~~~~~~--~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~ 79 (361)
T 3scy_A 8 STTDSELTMLVGTYTSGN-----SKGIYTFRFNEETGESLPLS--DA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSA 79 (361)
T ss_dssp CGGGGEEEEEEEECCSSS-----CCEEEEEEEETTTCCEEEEE--EE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEE
T ss_pred hhCCCceEEEEEeccCCC-----CCCEEEEEEeCCCCCEEEee--cc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEE
Confidence 345556677777654211 37889998754 3332222 22 66788889999999999999875 79999
Q ss_pred EEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe------cc--------CCCc
Q 001403 415 YAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG--------HGAP 479 (1084)
Q Consensus 415 wd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~------~~--------h~~~ 479 (1084)
|+++.. ..+..+.....+......+++ +++. ++++...++.|.+|++.+...+..+ .+ +...
T Consensus 80 ~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~ 156 (361)
T 3scy_A 80 FAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPH 156 (361)
T ss_dssp EEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCC
T ss_pred EEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCc
Confidence 998763 223333344445556777888 7773 3344446889999999754433221 11 1234
Q ss_pred EEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCc------e-------EeecCCCCeEEEEEEcCCCCEEEEEeeCCCC
Q 001403 480 VYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 545 (1084)
Q Consensus 480 v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~ 545 (1084)
+.+++|+ ++|+++++++ .++.|.+|+++.... . ............++|+|||++++++.. .
T Consensus 157 ~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~ 231 (361)
T 3scy_A 157 LHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE---I 231 (361)
T ss_dssp EEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---T
T ss_pred ceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC---C
Confidence 5778885 4777665554 588999999886542 1 222334456789999999999887763 3
Q ss_pred CeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECC--CcEEEEECC--CCe--EEEEEcCCCCCCCc
Q 001403 546 ESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMN--KVQ--LLTTIDAGGGLPEN 617 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~--~~~--~~~~~~~~~~~~~v 617 (1084)
++.|.+||+.+++. +..+.....+......++|+||+++|+++..+ +.|.+|++. +++ .+..+.. + ..+
T Consensus 232 ~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g--~~~ 308 (361)
T 3scy_A 232 GGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G--IHP 308 (361)
T ss_dssp TCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S--SCC
T ss_pred CCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C--CCC
Confidence 66799999987755 23333322222456899999999999776654 899999985 455 3444443 2 246
Q ss_pred ceEEEecCCCEEEEEE-CCCeEEEEEc--CCCCeeeec-cccccceeEEEEc
Q 001403 618 PRICFNKNGTLLAVIA-NENRIKILET--PESNSVDAA-GVLSDNLRKLSVN 665 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~-~dg~i~iwd~--~~~~~~~~~-~~~~~~i~~~~~~ 665 (1084)
..++|+|||++|+++. .++.|.+|++ .+++..... ..+.....|+.|.
T Consensus 309 ~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~ 360 (361)
T 3scy_A 309 RNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV 360 (361)
T ss_dssp CEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred ceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence 7999999999998888 5789999655 455544333 2334456666553
No 151
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=99.84 E-value=1.8e-18 Score=192.62 Aligned_cols=273 Identities=10% Similarity=0.115 Sum_probs=183.9
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC---CCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~---dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
+.+.+|++..............+...+..++|+|||+ |++++. ++.|.+|++.+++. +....+..+...+..++|
T Consensus 16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~-~~~~~~~~~~~~p~~~a~ 93 (347)
T 3hfq_A 16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTA-HKLNTVVAPGTPPAYVAV 93 (347)
T ss_dssp CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEE-EEEEEEEEESCCCSEEEE
T ss_pred CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcE-EEeeeeecCCCCCEEEEE
Confidence 5677877764322222211233556788899999999 555543 68999999987653 333344567788999999
Q ss_pred ecCCCcEEEEEEe-CCCcEEEEECC-CCc--eeeEecc---------CCCcEEEEeecccCCCcEEEEEecCCeEEEEEC
Q 001403 442 SAPCKQISVITCG-DDKTIKVWDAV-TGS--RTYSFEG---------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 508 (1084)
Q Consensus 442 s~d~~~l~l~s~~-~d~~i~vwd~~-~g~--~~~~~~~---------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~ 508 (1084)
+|||+ +|++++ .++.|.+|++. +|. .+..+.. +...+.+++|+| +|+++++...++.|.+|++
T Consensus 94 spdg~--~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~sp--dg~l~v~~~~~~~v~~~~~ 169 (347)
T 3hfq_A 94 DEARQ--LVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTP--DNRLAVIDLGSDKVYVYNV 169 (347)
T ss_dssp ETTTT--EEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECT--TSCEEEEETTTTEEEEEEE
T ss_pred CCCCC--EEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECC--CCcEEEEeCCCCEEEEEEE
Confidence 99999 566666 68999999986 333 2333322 123478899955 6667777777899999999
Q ss_pred CC-CCceE--eec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC--ceEe--eeeecccc---ccCceEEEE
Q 001403 509 DS-LGARV--DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAIK--RTYQGLQL---QHNSVSVVH 577 (1084)
Q Consensus 509 ~~-~~~~~--~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~--~~~~--~~~~~~~~---~~~~v~~~~ 577 (1084)
+. +.... ... ........++|+|||++++++.. .++.|.+|++.. ++.. ..+..... ....+..++
T Consensus 170 ~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 246 (347)
T 3hfq_A 170 SDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGE---LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIR 246 (347)
T ss_dssp CTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEE
T ss_pred CCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEE
Confidence 83 33221 112 23346778999999998877653 356789998774 5432 22222210 013588899
Q ss_pred EcCCCCEEEE-EECCCcEEEEECCC---CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC-CeEEEEEc--CCCCe
Q 001403 578 FDTAKDQILA-AGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKILET--PESNS 648 (1084)
Q Consensus 578 ~s~~~~~l~~-~~~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d-g~i~iwd~--~~~~~ 648 (1084)
|+|+|++|++ ...++.|.+|++.. .+.+..+..++. .+..++|+|||++|+++..+ +.+.+|++ .+++.
T Consensus 247 ~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l 322 (347)
T 3hfq_A 247 LSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGD--FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKL 322 (347)
T ss_dssp ECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSS--CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCE
T ss_pred ECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCC--CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeE
Confidence 9999998854 56789999999972 244555554332 46899999999998888764 89999955 45543
No 152
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.84 E-value=6.6e-20 Score=219.93 Aligned_cols=272 Identities=11% Similarity=0.062 Sum_probs=197.1
Q ss_pred CCCceEEEEcCCCceeeeecc-cccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEEcCCCCEEEEEeC---
Q 001403 334 SSSPMSMDFHPVQHTLLLGLW-DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS--- 408 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~-d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~fspdg~~las~~~--- 408 (1084)
..+|.+++|||||++||+++. | ++++||++.++... . +..|. ..|..++|||| +.+++++.
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~---------g~~~lw~~~~g~~~---~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g 86 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSE---------GSVNAYLYDGGETV---K-LNREPINSVLDPHYGVG-RVILVRDVSKG 86 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEET---------TEEEEEEEETTEEE---E-CCSSCCSEECEECTTCS-EEEEEEECSTT
T ss_pred ccchheeecCCCCCeEEEEEccC---------CceeEEEEcCCCcE---e-eecccccccccccCCCC-eEEEEeccCCC
Confidence 448999999999999999765 5 89999998654332 1 33344 68999999999 77777765
Q ss_pred CCEEEEEEccC--CccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 409 KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 409 dg~v~iwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
+....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+. .+++|+
T Consensus 87 ~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~---~~~~~s 158 (582)
T 3o4h_A 87 AEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG---FGFVSD 158 (582)
T ss_dssp SCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS---CEEEEE
T ss_pred CcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC---ceEEEC
Confidence 44466665543 21112 222222 34467899999875666666555 4599999987655444333 667775
Q ss_pred ccCCCcEEEEEecC----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee
Q 001403 487 AKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 562 (1084)
Q Consensus 487 ~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~ 562 (1084)
+||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||+.|+++.. ++...|++||+.+++.. .
T Consensus 159 --pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~~~~~~~-~ 232 (582)
T 3o4h_A 159 --IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDPRDGSVE-D 232 (582)
T ss_dssp --EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECTTTCCEE-E
T ss_pred --CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcCCCCcEE-E
Confidence 477899988877 78999999877655 56677778899999999999995433 33458999999999887 6
Q ss_pred eeccccccCceEEEE--------EcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 563 YQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 563 ~~~~~~~~~~v~~~~--------~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
+.++. ..+..++ |+|||..+++++.++.+++|++ |+..... ...+.+++|+ +++.+++++.
T Consensus 233 ~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~l~~~s~ 301 (582)
T 3o4h_A 233 LELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKLVTSHTS 301 (582)
T ss_dssp CCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEEEEEEEE
T ss_pred ccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEEEEEEcC
Confidence 66655 4455555 9999988888999999999999 6655421 1347889999 9999988877
Q ss_pred CCe---EEEEEcC
Q 001403 635 ENR---IKILETP 644 (1084)
Q Consensus 635 dg~---i~iwd~~ 644 (1084)
+.. +.+|+..
T Consensus 302 ~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 302 LSTPPRIVSLPSG 314 (582)
T ss_dssp TTEEEEEEEETTC
T ss_pred CCCCCeEEEEcCC
Confidence 643 5566554
No 153
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=99.84 E-value=1.6e-19 Score=196.07 Aligned_cols=247 Identities=12% Similarity=0.065 Sum_probs=182.6
Q ss_pred CccceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCC-ccccceeeeecCC-CCCeEEEEEcCC
Q 001403 322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-CSMLFKTALVRDP-GVSVNRVVWSPD 399 (1084)
Q Consensus 322 ~p~~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-~~~~~~~~~~~~h-~~~V~~v~fspd 399 (1084)
+.......+..|...|.+++|||||++||++. + +.|.+||+.+ +.... +..+| ...|.+++|+||
T Consensus 29 ~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~-~---------~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~~spd 95 (297)
T 2ojh_A 29 IRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS-E---------GLLYRLSLAGDPSPEK---VDTGFATICNNDHGISPD 95 (297)
T ss_dssp TTTTEEEEEEEESSCCEEEEECTTSSEEEEEE-T---------TEEEEEESSSCCSCEE---CCCTTCCCBCSCCEECTT
T ss_pred CCCCceeeeccCCcceEeeEECCCCCEEEEEc-C---------CeEEEEeCCCCCCceE---eccccccccccceEECCC
Confidence 33444556677888999999999999999963 3 8899999988 54432 23344 478899999999
Q ss_pred CCEEEEEe--CCCEEEEEE--ccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC-CCceeeEec
Q 001403 400 GSLLGVAY--SKHIVQLYA--YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFE 474 (1084)
Q Consensus 400 g~~las~~--~dg~v~iwd--~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~-~g~~~~~~~ 474 (1084)
|++|++++ .++.+.||. ..++. .. .+..+. .+.+++|+||++. ++++++.++.+++|++. .+.....+.
T Consensus 96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~~~~~~ 169 (297)
T 2ojh_A 96 GALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGVETRLT 169 (297)
T ss_dssp SSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred CCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCCcceEcc
Confidence 99999998 334455554 45543 22 333333 4889999999994 33477789999999853 233446677
Q ss_pred cCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECC-CCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC-------C
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-------G 545 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~-------~ 545 (1084)
.|...+.+++|++ ++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++. +
T Consensus 170 ~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~ 247 (297)
T 2ojh_A 170 HGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDL 247 (297)
T ss_dssp CSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSE
T ss_pred cCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccC
Confidence 7888999999955 667777665 58999999987 44556666667778999999999999998876432 2
Q ss_pred CeeEEEecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEEECCC
Q 001403 546 ESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAAGDDH 592 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg 592 (1084)
...|++||+.+++.... +.++. ..+..++|+|++++|++++.+.
T Consensus 248 ~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 248 DVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp EEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred ceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence 36799999998866433 33555 6788899999999998877553
No 154
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=99.84 E-value=1.7e-17 Score=185.82 Aligned_cols=312 Identities=11% Similarity=0.104 Sum_probs=196.2
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecC--CCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC----CcEEEEECCC--C
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V 602 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~--~ 602 (1084)
+...++++++....+++.|++|++ .+++.......+. ..+..++|+|++++|++++.+ +.|.+|++.. +
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~---~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g 87 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEV---ANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG 87 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEEC---SCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccC---CCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence 444556666554444556777755 5565543333233 667889999999999998876 7999998765 5
Q ss_pred eEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeE
Q 001403 603 QLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS 681 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~ 681 (1084)
+................+++ ++++++++. .++.+.+|++.....+.....
T Consensus 88 ~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~--------------------------- 138 (361)
T 3scy_A 88 TLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD--------------------------- 138 (361)
T ss_dssp EEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE---------------------------
T ss_pred cEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce---------------------------
Confidence 44322221111223456666 788777776 578999999875422211100
Q ss_pred ecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccC
Q 001403 682 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT 761 (1084)
Q Consensus 682 ~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~ 761 (1084)
.+.. .+.
T Consensus 139 -------------------------------------------------~~~~--~g~---------------------- 145 (361)
T 3scy_A 139 -------------------------------------------------VIEF--KGS---------------------- 145 (361)
T ss_dssp -------------------------------------------------EEEC--CCC----------------------
T ss_pred -------------------------------------------------eEEc--cCC----------------------
Confidence 0000 000
Q ss_pred cCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCce-------e-----
Q 001403 762 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK-------T----- 827 (1084)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~-------~----- 827 (1084)
+. .+...+...+.+++|+|||+++++++ ++.|.+|++.... .
T Consensus 146 ------------------~~------~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~ 201 (361)
T 3scy_A 146 ------------------GP------DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGT 201 (361)
T ss_dssp ------------------CS------CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEE
T ss_pred ------------------CC------CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeeccc
Confidence 00 00001233467788888888776665 5788888876433 1
Q ss_pred -EEEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCcee--eeee---cccccCEEEEEEcCCCCEEEEEeCC-
Q 001403 828 -ILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGGD- 899 (1084)
Q Consensus 828 -~~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~~--~~~l---~~h~~~V~~l~~spd~~~l~s~s~d- 899 (1084)
......+...+..++|+| +++++++++ .++.|.+|++.+++. +..+ ..+...+.+++|+|||++|+++..+
T Consensus 202 ~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~ 280 (361)
T 3scy_A 202 PEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK 280 (361)
T ss_dssp EEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS
T ss_pred ccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC
Confidence 122233455678999999 888777776 689999999987754 2222 3344567899999999998766654
Q ss_pred -CcEEEEeCC--CCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEE--cCCcceeeEeecCCCCC
Q 001403 900 -AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYE--AEELTCLKQWFPISSVP 972 (1084)
Q Consensus 900 -g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd--~~~~~~~~~~~~~h~~~ 972 (1084)
+.|.+|++. +++......+.. + ..+..++|+|||++|+++ .++.|.+|+ ..+|+........+...
T Consensus 281 ~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~ 353 (361)
T 3scy_A 281 ADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDK 353 (361)
T ss_dssp SCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSS
T ss_pred CCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCC
Confidence 899999996 444333222222 1 247799999999999885 467899964 45676554322234567
Q ss_pred EEEEEEc
Q 001403 973 ISQATFS 979 (1084)
Q Consensus 973 v~~l~fs 979 (1084)
+.|+.|.
T Consensus 354 p~~v~~~ 360 (361)
T 3scy_A 354 PVCLKFV 360 (361)
T ss_dssp EEEEEEE
T ss_pred CeEEEEc
Confidence 8899886
No 155
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=225.73 Aligned_cols=340 Identities=8% Similarity=0.059 Sum_probs=222.4
Q ss_pred cCCCCCCCCcchhhhcccccCCCccCCCcc-ceeeecccCCC---CceEEEEcCCCceeeeecccccCccccccceEEEE
Q 001403 295 KNIPDYSPKSSLKKEMFQSFGETSFSDFPK-TVAQTLIEGSS---SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVW 370 (1084)
Q Consensus 295 ~s~~~fsP~~s~~~~~f~~~~~~~~~~~p~-~~~~~l~~h~~---~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iw 370 (1084)
+..+.|+|++.++..- ..+..++.+... ...+.+.+|.. .|.+++|||||++||+++.....-..-.++.|++|
T Consensus 18 ~~~~~~s~dg~~~~~~--~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~ 95 (719)
T 1z68_A 18 TFFPNWISGQEYLHQS--ADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIY 95 (719)
T ss_dssp CCCCEESSSSEEEEEC--TTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCccEECCCCeEEEEc--CCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence 3457899998654332 123334444443 33444445543 49999999999999997652000000013899999
Q ss_pred EcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccE--------------
Q 001403 371 DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV-------------- 436 (1084)
Q Consensus 371 d~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-------------- 436 (1084)
|+.++....... + ...+..++|||||++||++. ++.|++||+.+++..+. ...++...|
T Consensus 96 d~~~g~~~~~~~-l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l--~~~~~~~~v~~g~~~~v~~ee~~ 168 (719)
T 1z68_A 96 DLSNGEFVRGNE-L---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQI--TFNGRENKIFNGIPDWVYEEEML 168 (719)
T ss_dssp ETTTTEECCSSC-C---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEEC--CCCCBTTTEEESSCCHHHHHHTT
T ss_pred ECCCCcccccee-c---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEE--ecCCCcCCeEcccccceeeeecc
Confidence 998876521111 1 25688999999999999986 67899999998865431 112333222
Q ss_pred ---eEEEeecCCCcEEEEEEeCCC----------------------------------cEEEEECCCCcee--------e
Q 001403 437 ---NDLAFSAPCKQISVITCGDDK----------------------------------TIKVWDAVTGSRT--------Y 471 (1084)
Q Consensus 437 ---~~l~~s~d~~~l~l~s~~~d~----------------------------------~i~vwd~~~g~~~--------~ 471 (1084)
.+++|||||+ .|++++.|. .|++||+.+++.. .
T Consensus 169 ~~~~~~~wSPDG~--~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~ 246 (719)
T 1z68_A 169 ATKYALWWSPNGK--FLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPA 246 (719)
T ss_dssp CSSCCEEECTTSS--EEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCH
T ss_pred cCcccEEECCCCC--EEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCc
Confidence 4899999999 677766542 7899999988753 2
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEE----CCCCCceEee----cCCCCeEE-----EEEEcCCCC
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWL----YDSLGARVDY----DAPGLGCT-----RMAYSANGR 534 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd----~~~~~~~~~~----~~~~~~i~-----~~~~s~d~~ 534 (1084)
.+.+|...+.+++|+| |+.++++.... ..|.+|| ..+++....+ ..+...+. .++|+|||+
T Consensus 247 ~~~~~~~~~~~~~~Sp--D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 247 MIASSDYYFSWLTWVT--DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHHTSCEEEEEEEESS--SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSS
T ss_pred cCCCCcceEEEeEEeC--CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCC
Confidence 2446888899999966 56777764433 2488888 6665444333 34455555 789999999
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCC--Ce-EEE
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNK--VQ-LLT 606 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~--~~-~~~ 606 (1084)
.++....+.++...|++||+.+++. ..+..+. ..+..+.+. +++.++..+.+ +..++|.+.. +. ...
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~~---~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 399 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVENA-IQITSGK---WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKK 399 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTTC-EECSCSS---SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEE
T ss_pred eEEEEEEccCCceEEEEEECCCCce-EecccCc---eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCce
Confidence 8877555556677899999988763 4444433 457777777 88888877654 7888887653 42 123
Q ss_pred EEcC--CCCCCCcceEEEecCCCEEEEEEC-C--CeEEEEEcCCCCeeeec
Q 001403 607 TIDA--GGGLPENPRICFNKNGTLLAVIAN-E--NRIKILETPESNSVDAA 652 (1084)
Q Consensus 607 ~~~~--~~~~~~v~~v~~s~~~~~l~~~~~-d--g~i~iwd~~~~~~~~~~ 652 (1084)
.+.. .++...+..+.|+|++++++.... . ..+.+|++.+++....+
T Consensus 400 ~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~ 450 (719)
T 1z68_A 400 CVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKIL 450 (719)
T ss_dssp ESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEE
T ss_pred eccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEe
Confidence 3331 112234678999999988775433 2 57889998877654433
No 156
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=99.83 E-value=3e-19 Score=214.25 Aligned_cols=237 Identities=16% Similarity=0.167 Sum_probs=176.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeC-CCEEEEEEccCCccccceeeeeccc-ccEeEEEeecCCCcEEEEEEeC---CCcEEE
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKV 461 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~-dg~v~iwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~l~l~s~~~---d~~i~v 461 (1084)
+..+|.+++|||||++||+++. ||++.||++++++.. .+..|. ..+..++|||| + ++++++. +....+
T Consensus 20 ~~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l 92 (582)
T 3o4h_A 20 IAVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHAL 92 (582)
T ss_dssp HHSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEE
T ss_pred hccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEE
Confidence 3468999999999999999887 999999999776543 344555 68999999999 5 6776664 455566
Q ss_pred EECCC---CceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 462 WDAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 462 wd~~~---g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
|.+.. |... .+..+. .+...+|++++++..+++++.++.. +||+++++.......+. .+++|+|||+++++
T Consensus 93 ~~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~ 166 (582)
T 3o4h_A 93 FKVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAG 166 (582)
T ss_dssp EEEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEE
T ss_pred EEEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEE
Confidence 54432 3322 443322 2335577777665556666555554 99998876544443333 78999999999998
Q ss_pred EeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC--cEEEEECCCCeEEEEEcCCCCCCC
Q 001403 539 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
++.+..+...|++||+.+++.. .+..+. ..+..++|+|||+.|+++..++ .|++||+.+++.. .+..+. ..
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~ 239 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KD 239 (582)
T ss_dssp EEEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SH
T ss_pred EEEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cC
Confidence 8765444477999999988765 555555 6789999999999999888888 8999999998887 554332 23
Q ss_pred cceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001403 617 NPRIC--------FNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 617 v~~v~--------~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+..++ |+|||.++++++.++.+++|++
T Consensus 240 ~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 240 FSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 55666 9999998999999999999998
No 157
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.83 E-value=6.1e-19 Score=200.00 Aligned_cols=311 Identities=10% Similarity=0.015 Sum_probs=204.3
Q ss_pred ccCCCccceeeecccCCCCceE-----EEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeE
Q 001403 318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN 392 (1084)
Q Consensus 318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~ 392 (1084)
++..........|..|...+.. .+|||||++||+...+ .|. ..|.+||+.++.... +..+|...+.
T Consensus 14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~g~----~~l~~~d~~~g~~~~---lt~~~~~~~~ 84 (388)
T 3pe7_A 14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAF--DGP----WNYYLLDLNTQVATQ---LTEGRGDNTF 84 (388)
T ss_dssp EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TSS----CEEEEEETTTCEEEE---CCCSSCBCSS
T ss_pred EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcC--CCC----ceEEEEeCCCCceEE---eeeCCCCCcc
Confidence 3334445566778877766655 8999999999997652 111 358888988765432 2445666666
Q ss_pred EEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEE--eecCCCcEEEEE------------------
Q 001403 393 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT------------------ 452 (1084)
Q Consensus 393 ~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~l~l~s------------------ 452 (1084)
.++|||||++|++++.++.|.+||+.+++... ....+...+.... +++|++ .++.
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~~ 159 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKFH 159 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchhh
Confidence 78899999999999999999999999987543 2334444444443 489998 4543
Q ss_pred ----EeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCC-
Q 001403 453 ----CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPG- 521 (1084)
Q Consensus 453 ----~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~- 521 (1084)
.+.+..|.+||+.+|+.. .+..+...+..+.|+|. ||..|+..+.+ ..|.++|.+............
T Consensus 160 ~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~ 237 (388)
T 3pe7_A 160 EFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEG 237 (388)
T ss_dssp HHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTT
T ss_pred hhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCC
Confidence 224578999999998654 45556777888998541 56777776653 367777876654443333332
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeee--eeccccccCceEEEEEcCCCCEEEEE---------E
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA---------G 589 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~--~~~~~~~~~~v~~~~~s~~~~~l~~~---------~ 589 (1084)
..+..++|+|||+.|+..+.... ....|++||+.+++.... +.++...........|+|||+.|+.. .
T Consensus 238 ~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~ 317 (388)
T 3pe7_A 238 ESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIE 317 (388)
T ss_dssp EEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------C
T ss_pred cccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccC
Confidence 35778999999998877654322 123599999999875332 22211000001123699999988864 4
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCCC--------CcceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGLP--------ENPRICFNKNGTLLAVIAN-ENRIKILETP 644 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~~--------~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~ 644 (1084)
.+..|++||+.+++............ .+..++|+|||+.|+..+. +|...||.+.
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 318 NDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 56789999999987654443322111 3678899999998887765 5666666543
No 158
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=1.6e-18 Score=213.50 Aligned_cols=278 Identities=14% Similarity=0.112 Sum_probs=187.9
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCC-----eEEEEEcCCCCEEEEEeCC-
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-----VNRVVWSPDGSLLGVAYSK- 409 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~-----V~~v~fspdg~~las~~~d- 409 (1084)
...+++|+|||++++++ | ++|++||+.++... .++.+|... ...++|||||++|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~---------~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~ 83 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--E---------NNILVFNAEYGNSS---VFLENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (740)
T ss_dssp CCCCEEECSSSEEEEEE--T---------TEEEEEETTTCCEE---EEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEE
T ss_pred cccccEECCCCcEEEEc--C---------CcEEEEECCCCceE---EEEechhhhhhcccccceEECCCCCEEEEEECCe
Confidence 56689999999999996 5 89999999887643 235555432 3448899999999999876
Q ss_pred --------CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeE-eccCCCcE
Q 001403 410 --------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV 480 (1084)
Q Consensus 410 --------g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~-~~~h~~~v 480 (1084)
+.+.+||+.+++.. .+..|.+.+...+|||||+ .|+.+. |+.|.+||+.+|...+. ..++...+
T Consensus 84 ~~~r~~~~~~~~~~d~~~~~~~----~l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~ 156 (740)
T 4a5s_A 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII 156 (740)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred eeEEEccceEEEEEECCCCcEE----EcccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEcCCCCccce
Confidence 56779999998754 3567788899999999999 566664 78999999988875432 22333333
Q ss_pred -----------------EEEeecccCCCcEEEEEecCCe-EEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 481 -----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 481 -----------------~~~~~~~~~~~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.++.| ++||+.|+.++.|.+ +.+|++....... .+......+.+.+.|...
T Consensus 157 ~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~~~------ 225 (740)
T 4a5s_A 157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGAVN------ 225 (740)
T ss_dssp EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTSCC------
T ss_pred ecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcCcC------
Confidence 23667 558889988876655 8888764221110 233456677777776432
Q ss_pred CCCCeeEEEecCCC---c---eEeeeeeccc---cccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe----EE
Q 001403 543 KEGESFLVEWNESE---G---AIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ----LL 605 (1084)
Q Consensus 543 ~~~~~~i~~wd~~~---~---~~~~~~~~~~---~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~----~~ 605 (1084)
....|++||+.+ + +.. .+.... .+...+..++|+|||+.++... .+..|++||+.+++ +.
T Consensus 226 --~~~~l~v~d~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~ 302 (740)
T 4a5s_A 226 --PTVKFFVVNTDSLSSVTNATSI-QITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCL 302 (740)
T ss_dssp --CEEEEEEEETTSCCSSSCCCEE-EECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEEC
T ss_pred --CeeEEEEEECCCCCCCCcceEE-EecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCcccccee
Confidence 234599999998 7 333 232200 0226789999999999766643 23479999999887 21
Q ss_pred --EEE--cCCCCCCC---cceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCCe
Q 001403 606 --TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESNS 648 (1084)
Q Consensus 606 --~~~--~~~~~~~~---v~~v~~s~~~~~l~-~~~~-d--g~i~iwd~~~~~~ 648 (1084)
..+ ..+..... ...++|+|||+.++ ..+. + ..|++|+..++..
T Consensus 303 ~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 303 VARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp GGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred EEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCce
Confidence 111 22222111 23789999999887 6654 3 4577777775543
No 159
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=99.83 E-value=4.6e-18 Score=209.41 Aligned_cols=379 Identities=12% Similarity=0.035 Sum_probs=242.1
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce--EEEEEcCCCCEEEEEECC---------C
Q 001403 524 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGDD---------H 592 (1084)
Q Consensus 524 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v--~~~~~s~~~~~l~~~~~d---------g 592 (1084)
..+++|+|||+++++. ++.|++||+.+++....+.++......+ ..+.|||||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 4578999999988875 4569999999999888887776222222 448899999999998876 5
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc-ccccceeEEEEcCCCcee
Q 001403 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPISTVT 671 (1084)
Q Consensus 593 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~~p~~~~~ 671 (1084)
.+.+||+.+++... +.. +...+..++|||||+.||.+. ++.|++|+..++...+... ++...
T Consensus 93 ~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67799999998654 322 233588999999999999885 5899999998775433211 00000
Q ss_pred eeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC-Cce
Q 001403 672 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVH 750 (1084)
Q Consensus 672 ~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d-g~i 750 (1084)
+..+. .-.+|.-+ -......+.|||||+.|+....| +.+
T Consensus 156 ---------------------~~~g~---~~~v~~ee----------------~~~~~~~~~wSpDg~~la~~~~d~~~v 195 (740)
T 4a5s_A 156 ---------------------IYNGI---TDWVYEEE----------------VFSAYSALWWSPNGTFLAYAQFNDTEV 195 (740)
T ss_dssp ---------------------EEESB---CCHHHHHH----------------TSSSSBCEEECTTSSEEEEEEEECTTC
T ss_pred ---------------------eecCc---ccccccch----------------hcCCCcceEECCCCCEEEEEEEcccCC
Confidence 00000 00011100 00123457899999999988765 447
Q ss_pred EEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCC---ce-
Q 001403 751 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK- 826 (1084)
Q Consensus 751 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~---~~- 826 (1084)
.+|++..... .. .+...+..+.+.+.|... ...+|.+||+.+ ++
T Consensus 196 ~~~~~~~~~~-----------------~~------------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 196 PLIEYSFYSD-----------------ES------------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp CEEEEEECCS-----------------TT------------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSC
T ss_pred ceEEEEeecC-----------------CC------------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCc
Confidence 7776542210 00 133445566777666431 123689999998 73
Q ss_pred -eEEEEcC------CCCCeEEEEEcCCCCcEEEEEeC----CCeEEEEEcCCce----ee--eee--cccccCEE-----
Q 001403 827 -TILTIMP------PSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT----- 882 (1084)
Q Consensus 827 -~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~----dg~i~iwd~~~~~----~~--~~l--~~h~~~V~----- 882 (1084)
....+.. +...+..++||| |+++++.... +..|++||+.+++ +. ..+ .+|...|.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~ 322 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS 322 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCC
Confidence 2334432 667799999999 7886665533 3479999999987 32 222 44665554
Q ss_pred EEEEcCCCCEEE-EEeCC---CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE-EeC-----C--e
Q 001403 883 GLVFSDALNILV-SSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----T--H 950 (1084)
Q Consensus 883 ~l~~spd~~~l~-s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~d-----~--~ 950 (1084)
.++|+|||+.|+ ..+.+ ..|++||+.+++.. +...+.. .+..+. ++|++.|+. +.. + .
T Consensus 323 ~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ 392 (740)
T 4a5s_A 323 EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRN 392 (740)
T ss_dssp CCEECTTSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBE
T ss_pred CceEcCCCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeE
Confidence 789999999887 66543 46888999875522 2223322 344443 355777666 432 2 4
Q ss_pred EEEEEcCCcceeeEeec---CCCCCEEEEEEccCCCEEEEEeCC---CcEEEEEcCCCceeEEe
Q 001403 951 LAIYEAEELTCLKQWFP---ISSVPISQATFSCDCRMVFTSFVD---GTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~---~h~~~v~~l~fs~dg~~l~t~~~d---g~i~vwd~~~~~~~~~~ 1008 (1084)
|+..++..+.....+.. +....+..+.|||||++++..... ..+.+++..+++....+
T Consensus 393 ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l 456 (740)
T 4a5s_A 393 LYKIQLIDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVL 456 (740)
T ss_dssp EEEEETTEEEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEe
Confidence 55566655443222221 124678899999999987765543 36888898888665444
No 160
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.82 E-value=4.9e-18 Score=189.36 Aligned_cols=300 Identities=9% Similarity=0.003 Sum_probs=192.6
Q ss_pred EEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeeecc
Q 001403 575 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 575 ~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|+|++++++ ..++.|.+||+.+++....+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 346788888999999999999999999999888875541 136789999999876554 468899999988765443221
Q ss_pred ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEE
Q 001403 654 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 733 (1084)
Q Consensus 654 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 733 (1084)
..... ......+..++
T Consensus 83 ~~~~~----------------------------------------------------------------~~~~~~~~~~~ 98 (349)
T 1jmx_B 83 LSSVP----------------------------------------------------------------GEVGRSMYSFA 98 (349)
T ss_dssp SCCST----------------------------------------------------------------TEEEECSSCEE
T ss_pred ccccc----------------------------------------------------------------ccccccccceE
Confidence 00000 00001123345
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS 813 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s 813 (1084)
|+|+|+++++++.+.... ...+ ...
T Consensus 99 ~spdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~ 123 (349)
T 1jmx_B 99 ISPDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVK 123 (349)
T ss_dssp ECTTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EEC
T ss_pred ECCCCCEEEEEccccccc-----------------------------------------------------cccc--ccC
Confidence 555555554444320000 0000 001
Q ss_pred CCeEEEEEcCCcee---EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccccc-----------
Q 001403 814 GGVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----------- 879 (1084)
Q Consensus 814 dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~----------- 879 (1084)
++.|.+||+.+++. +..+.. ...+.+++|+| +++ +++++. .|++||+.+++.+..+..+..
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~-dg~-l~~~~~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAAD-DGS-LYVAGP--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 198 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECT-TSC-EEEESS--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCC
T ss_pred CCeEEEEECCCccccceeeeccC-CCcccceeECC-CCc-EEEccC--cEEEEeCCCCceeccccccccCCccccCccce
Confidence 47899999988543 344443 34688999999 787 555543 499999999988776653320
Q ss_pred -------------CEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEcc-CCCEEE
Q 001403 880 -------------RVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFL 944 (1084)
Q Consensus 880 -------------~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la 944 (1084)
....+++++|+....... ....+..+|..+++......-. . ...+..++|+| ||++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~sp~dg~~l~ 271 (349)
T 1jmx_B 199 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----L---TELYFTGLRSPKDPNQIY 271 (349)
T ss_dssp CCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----C---SSCEEEEEECSSCTTEEE
T ss_pred eeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc----C---CCcceeeEecCCCCCEEE
Confidence 345577776653221110 1111223555554432211111 1 12578999999 999999
Q ss_pred EEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 945 LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
++ ++.|.+||+.+++.+..+..+ ..+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus 272 ~~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 272 GV-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp EE-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred EE-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 98 899999999999887765533 357799999999999999899999999999999887775
No 161
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=9.2e-19 Score=199.68 Aligned_cols=208 Identities=11% Similarity=0.053 Sum_probs=159.4
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccc---------c---ceeeeecCCCCCeEEEEEcCCCCE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSM---------L---FKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~---------~---~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
..+..+++++++.+++++..| + ++||+...... . ........|...|.+++|+|||++
T Consensus 37 ~~~n~lavs~~~~~l~~~~~d---------g-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~ 106 (434)
T 2oit_A 37 ERSSLLAVSNKYGLVFAGGAS---------G-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLT 106 (434)
T ss_dssp SCCBCEEEETTTTEEEEEETT---------E-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCE
T ss_pred CCccEEEEecCCCEEEEECCC---------E-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCE
Confidence 368999999999999998766 5 88887642110 0 000011235678999999999999
Q ss_pred EE----EEeCCCEEEEEEccCC--------ccccceeeeecccccEeEEEeecC-CCcEEEEEEeCCCcEEEEECCCCce
Q 001403 403 LG----VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSR 469 (1084)
Q Consensus 403 la----s~~~dg~v~iwd~~~~--------~~~~~~~~l~~h~~~V~~l~~s~d-~~~l~l~s~~~d~~i~vwd~~~g~~ 469 (1084)
|| +++.|++|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++||++++..
T Consensus 107 lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 107 LSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp EEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEE
T ss_pred EEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcc
Confidence 99 7788999999999865 222234456789999999999998 56 899999999999999999988
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC-------CCeEEEEEEcCCCCEEEEEeeC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
+....+|...|.+++|++ +|++|++|+.||.|++||.+ +.....+..+ ...+.+++|++++.++++.+..
T Consensus 185 ~~~~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~ 261 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAA 261 (434)
T ss_dssp EEEEECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEET
T ss_pred eeeccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccC
Confidence 777788999999999965 67899999999999999998 4444444332 2389999999998888765532
Q ss_pred C---CCCeeEEEecCCCc
Q 001403 543 K---EGESFLVEWNESEG 557 (1084)
Q Consensus 543 ~---~~~~~i~~wd~~~~ 557 (1084)
. +....+++|++...
T Consensus 262 dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 262 DGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TCCSSSCCEEEEEECCCT
T ss_pred CCccCCCCceEEEEeccC
Confidence 1 11234889998754
No 162
>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A
Probab=99.82 E-value=6.4e-19 Score=200.99 Aligned_cols=270 Identities=12% Similarity=0.096 Sum_probs=185.3
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCce----------eEEE-----EcCCCCCeEEEEEcCCCCcEEE----EE
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----------TILT-----IMPPSPTATSLAFNPHDNNVIA----IG 854 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~----------~~~~-----~~~~~~~i~~l~~s~~d~~~la----~g 854 (1084)
...+..+++++++.++++++...+++|+..... .... ...+...|.+++|+| ++++|| +|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg 114 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS 114 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence 446889999999999999986569998864211 1111 112456799999999 889999 78
Q ss_pred eCCCeEEEEEcCCc--------e---eeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC
Q 001403 855 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 922 (1084)
Q Consensus 855 ~~dg~i~iwd~~~~--------~---~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~ 922 (1084)
+.|+.|+|||+.++ + .+..+.+|...|.+++|+|+ +.+|++++.||+|++||+.++.. +....
T Consensus 115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~-----~~~~~ 189 (434)
T 2oit_A 115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK-----VCATL 189 (434)
T ss_dssp TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE-----EEEEE
T ss_pred CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc-----eeecc
Confidence 89999999999765 2 24566789999999999998 89999999999999999998632 11222
Q ss_pred CCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeec------CCCCCEEEEEEccCCCEEEEEe-CCC--
Q 001403 923 GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDG-- 992 (1084)
Q Consensus 923 ~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg-- 992 (1084)
+|.. .|.+++|+|+|++|+++ .|++|++||++ ++....+.. .|...|.+++|++++.++++.+ .||
T Consensus 190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~ 265 (434)
T 2oit_A 190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL 265 (434)
T ss_dssp CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence 3433 79999999999999995 78999999998 554443221 2334899999999998876533 443
Q ss_pred ----cEEEEEcCCCce-----eEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE-eCCCcEEEEcCCCCCCCcccC
Q 001403 993 ----TLSIHEASNLEV-----QCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 993 ----~i~vwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~-~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
.+++|++..... ...+....+-... .+...+.+.+-+ |.++++++ +..+.|.++.....+..|...
T Consensus 266 ~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~---~r~~~~~~~~l~-dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~ 341 (434)
T 2oit_A 266 ETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCT---ERQHHYYLSYIE-EWDLVLAASAASTEVSILARQSDQINWESW 341 (434)
T ss_dssp SSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCS---SSCCCEEEEEEG-GGTEEEEEETTCSBCEEEEECTTSSCEEEE
T ss_pred CCCCceEEEEeccCCCCCCcceEecccCCCCCCC---CcCcceeeehhc-cCCEEEEecCCCCceeEEEecCCCCccEEE
Confidence 389999986531 1222211111111 111122344445 34555554 445568999887766678766
Q ss_pred CCCCcccCCCCCCcc
Q 001403 1063 PPDEIVGDQPTSTSE 1077 (1084)
Q Consensus 1063 ~~~~~~~~~~~~~~~ 1077 (1084)
...|...+..+-+.+
T Consensus 342 ~~~d~~ra~lP~~~~ 356 (434)
T 2oit_A 342 LLEDSSRAELPVTDK 356 (434)
T ss_dssp EECGGGCCBCCBCTT
T ss_pred eccccccccccCCCC
Confidence 666655555544433
No 163
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=99.81 E-value=8.3e-18 Score=187.47 Aligned_cols=282 Identities=11% Similarity=0.073 Sum_probs=193.7
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEc
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAY 417 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~ 417 (1084)
.+++++++++++++..+ ++|.+||..++....... .+....+..++|+|||++++++ ..++.|.+||+
T Consensus 4 g~~~~~~~~~~v~~~~~---------~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~ 72 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYP---------NNLHVVDVASDTVYKSCV--MPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDL 72 (349)
T ss_dssp CCCCCTTCEEEEEEETT---------TEEEEEETTTTEEEEEEE--CSSCCSSCEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred cccccCCCEEEEEeCCC---------CeEEEEECCCCcEEEEEe--cCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeC
Confidence 46789999999998766 999999998876543321 1222367899999999976544 56899999999
Q ss_pred cCCccccceeeee-cc-----cccEeEEEeecCCCcEEEEEEeCC------------CcEEEEECCCCcee---eEeccC
Q 001403 418 HGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSRT---YSFEGH 476 (1084)
Q Consensus 418 ~~~~~~~~~~~l~-~h-----~~~V~~l~~s~d~~~l~l~s~~~d------------~~i~vwd~~~g~~~---~~~~~h 476 (1084)
.+++... .+. .+ ...+.+++|+|||+ ++++++.+ +.|.+||+.+++.. ..+. +
T Consensus 73 ~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~ 146 (349)
T 1jmx_B 73 DTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M 146 (349)
T ss_dssp TTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred CCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence 9987554 222 22 33478999999999 66666654 89999999985543 3343 3
Q ss_pred CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC---------------------C---eEEEEEEcCC
Q 001403 477 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------------L---GCTRMAYSAN 532 (1084)
Q Consensus 477 ~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~i~~~~~s~d 532 (1084)
...+.+++|++ +++ +++++ +.|.+||..+++....+.... . ....++++++
T Consensus 147 ~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 221 (349)
T 1jmx_B 147 PRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKD 221 (349)
T ss_dssp CSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC--
T ss_pred CCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCC
Confidence 34577788854 666 55544 349999998887665554331 0 3345667666
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCceEeee-eeccccccCceEEEEEcC-CCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+........ +...+..+|..+++.... +... ...+..++|+| ++++++++ ++.|.+||+.+++.+..+..
T Consensus 222 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~ 293 (349)
T 1jmx_B 222 DKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL 293 (349)
T ss_dssp -----CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC
T ss_pred CcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC
Confidence 533211110 011233356665543211 1112 25688999999 99999988 88999999999999888865
Q ss_pred CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 611 GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 611 ~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.. .+..++|+|++++|++++.++.|.+||..+++.+..+.
T Consensus 294 ~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~ 333 (349)
T 1jmx_B 294 DH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK 333 (349)
T ss_dssp SS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred CC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence 43 36789999999999888889999999999887776654
No 164
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=99.80 E-value=5.5e-18 Score=192.08 Aligned_cols=307 Identities=11% Similarity=0.019 Sum_probs=202.9
Q ss_pred EEEcCCccccceeeeecCCCCCeEE-----EEEcCCCCEEEEEeC-CC--EEEEEEccCCccccceeeeecccccEeEEE
Q 001403 369 VWDIGACSMLFKTALVRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLA 440 (1084)
Q Consensus 369 iwd~~~~~~~~~~~~~~~h~~~V~~-----v~fspdg~~las~~~-dg--~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~ 440 (1084)
.+|..++....+ +..|...+.. .+|||||++||+++. ++ .|.+||+.+++... ...++...+..++
T Consensus 14 ~~~~~~g~~~~~---lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~ 87 (388)
T 3pe7_A 14 YQDASTGAQVTR---LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGF 87 (388)
T ss_dssp EECTTTCCEEEE---CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCE
T ss_pred EecCCCCcceEE---ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceE
Confidence 344444443322 5556655655 899999999999987 66 48888998886543 3345655666788
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------------------
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---------------------- 498 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s---------------------- 498 (1084)
|+|||+ .|+.++.++.|.+||+.+++....+..+...+....+..++++.+++...
T Consensus 88 ~spdg~--~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (388)
T 3pe7_A 88 LSPDDD--ALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTK 165 (388)
T ss_dssp ECTTSS--EEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGC
T ss_pred EcCCCC--EEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccC
Confidence 999999 78888888999999999998877777676666555554466777777432
Q ss_pred cCCeEEEEECCCCCceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCC--CCeeEEEecCCCceEeeeeeccccccCceEE
Q 001403 499 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSV 575 (1084)
Q Consensus 499 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~--~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~ 575 (1084)
.++.|.+||+.+++.... ..+...+..++|+| ||+.|+.+..... ....|+++|..+++......... ...+..
T Consensus 166 ~~~~l~~~d~~~g~~~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~ 242 (388)
T 3pe7_A 166 PCCRLMRVDLKTGESTVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTH 242 (388)
T ss_dssp CCEEEEEEETTTCCEEEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEE
T ss_pred CcceEEEEECCCCceEEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--Cccccc
Confidence 346799999988764433 34455688999999 9999988775321 14468889987665443333221 124778
Q ss_pred EEEcCCCCEEEEEEC-CC----cEEEEECCCCeEEEEEcCCCC--C-CCcceEEEecCCCEEEEE---------ECCCeE
Q 001403 576 VHFDTAKDQILAAGD-DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRI 638 (1084)
Q Consensus 576 ~~~s~~~~~l~~~~~-dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~~~~l~~~---------~~dg~i 638 (1084)
++|+|||+.|+..+. ++ .|++||+.+++.......... . ......+|+|||+.|+.. ..+..|
T Consensus 243 ~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i 322 (388)
T 3pe7_A 243 EFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFL 322 (388)
T ss_dssp EEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEE
T ss_pred ceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEE
Confidence 899999998866442 22 399999999875443322210 0 012334799999988864 446689
Q ss_pred EEEEcCCCCeeeecccccc-----------ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceec-ccCcccccc
Q 001403 639 KILETPESNSVDAAGVLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEK 706 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~~~~~-----------~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~-~d~~i~~w~ 706 (1084)
++||+.+++. ..+..+.. .+..++|+ |||+.++..+ .++...+|.
T Consensus 323 ~~~d~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~s----------------------pDg~~l~~~s~~~g~~~l~~ 379 (388)
T 3pe7_A 323 YVFNMKNGTQ-HRVARHDTSWKVFEGDRQVTHPHPSFT----------------------PDDKQILFTSDVHGKPALYL 379 (388)
T ss_dssp EEEETTTTEE-EEEEECCCCCCCBTTBSSTTCCCCEEC----------------------TTSSEEEEEECTTSSCEEEE
T ss_pred EEEeccCCce-EEeccccCcccccccccccCCCCccCC----------------------CCCCEEEEEecCCCceeEEE
Confidence 9999988754 33333332 23444444 6776665444 466777776
Q ss_pred cee
Q 001403 707 PLF 709 (1084)
Q Consensus 707 ~~~ 709 (1084)
+..
T Consensus 380 ~~l 382 (388)
T 3pe7_A 380 ATL 382 (388)
T ss_dssp EEC
T ss_pred EEC
Confidence 653
No 165
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.80 E-value=2.1e-17 Score=185.09 Aligned_cols=249 Identities=9% Similarity=0.102 Sum_probs=170.1
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcC-CceeEEEEcC-CCCCeEEEEEcCCCCc--EEEEEe-------------CC
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------DD 857 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~la~g~-------------~d 857 (1084)
..+..++++|||++|++++.+.|.+|++. +++....... ..+.+.+++|+| +++ ++++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 46788999999999988885599999997 7776543321 112356689999 788 455553 68
Q ss_pred CeEEEEEcC-Cceeeeeec----ccccCEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCceeeeeeeecCCCCccCCCC
Q 001403 858 STILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPS 930 (1084)
Q Consensus 858 g~i~iwd~~-~~~~~~~l~----~h~~~V~~l~~spd~~~l~s~s~-dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~ 930 (1084)
|.+.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++||+. +++......+.... +. ..
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~g---~~ 194 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-PG---DH 194 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-TT---CC
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-CC---CC
Confidence 999999997 466544443 24567999999999998887764 6799999998 66643322222111 11 25
Q ss_pred ceEEEEccCCCEEEEEe--CCeEEEEEcC--Ccceee---Ee--ec----CCCC------CEEEEE-EccCCCEEEEEeC
Q 001403 931 ETHIQFHKDQTRFLLVH--ETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSFV 990 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~~--d~~i~vwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~~ 990 (1084)
+..++|+|||++|+++. ++.|.+|++. +|+... .+ .. +|.. .+..++ |||||++|+++..
T Consensus 195 p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~ 274 (365)
T 1jof_A 195 PRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR 274 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred CCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence 78999999999998853 5789999865 565421 11 11 1222 588999 9999999987764
Q ss_pred CC------cEEEEEcC-CCceeEEeccccccCCCCcccceeeeEEEECCC--CCCEEEEEeCC-CcEEEEcCCCC
Q 001403 991 DG------TLSIHEAS-NLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTN-GEVYVIEPNEP 1055 (1084)
Q Consensus 991 dg------~i~vwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~d-g~v~vw~~~~~ 1055 (1084)
+. .|.+|++. +|++............ .+..++|+|. ||++|++++.+ +.|.+|++...
T Consensus 275 ~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~-------~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 275 ANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTS-------GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp ESSTTSCCEEEEEEECTTSCEEEEEEEEECSSC-------CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCCCeEEEEEECCCCCEEEeeeeeecCCC-------CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 33 89999996 6665432110000111 1223678884 48899988865 89999998543
No 166
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.78 E-value=1e-16 Score=178.36 Aligned_cols=224 Identities=10% Similarity=0.064 Sum_probs=156.9
Q ss_pred CCccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ce
Q 001403 795 EAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SE 869 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~ 869 (1084)
.....++++|||++|++++ +++|.+||+.+++.+.+ +... ....+.+.|++...+++.+.||.+.+|++.. ++
T Consensus 108 ~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~ 185 (361)
T 2oiz_A 108 NYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGK 185 (361)
T ss_dssp CCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSS
T ss_pred CCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCc
Confidence 3456789999999998875 47899999999998887 5532 2233567784557888899999999999865 55
Q ss_pred eee------eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC---Ccc-CCCCceEEEEccC
Q 001403 870 VIS------KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG---VMT-LAPSETHIQFHKD 939 (1084)
Q Consensus 870 ~~~------~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~---~~~-~~~~v~~~~~s~d 939 (1084)
... .+..+..++ .+.+++++..++..+.++.|.++|+..+............. ... .......++|+||
T Consensus 186 ~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~d 264 (361)
T 2oiz_A 186 VASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRA 264 (361)
T ss_dssp EEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETT
T ss_pred EeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecC
Confidence 441 222222322 34557888888888899999999998654322221111110 000 0012234799999
Q ss_pred CCEEEEE-e-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC--cee
Q 001403 940 QTRFLLV-H-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL--EVQ 1005 (1084)
Q Consensus 940 g~~la~~-~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~--~~~ 1005 (1084)
++.+.++ . .+.|.+||+.+++.+..+..+ . +.+++|+|||++|++++. ++|.+||+.++ +.+
T Consensus 265 g~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~-~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 265 SGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR-D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp TTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT-T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred CCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC-C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 9988874 3 247999999999998886543 3 899999999999998886 99999999999 888
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCC
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPT 1036 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~ 1036 (1084)
.++... .-.|..++++|+ |.
T Consensus 341 ~~i~~~----------G~~P~~~~~~p~-G~ 360 (361)
T 2oiz_A 341 RTIEGA----------AEASLQVQFHPV-GG 360 (361)
T ss_dssp EEETTS----------CSSEEEEEECCC-SC
T ss_pred EEeccC----------CCCcEEEEecCC-CC
Confidence 776411 124567889994 53
No 167
>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1
Probab=99.77 E-value=1e-16 Score=179.52 Aligned_cols=250 Identities=9% Similarity=0.061 Sum_probs=173.3
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc-CCccccceeeeecccccEeEEEeecCCCcEEEEEEe-----------
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG----------- 454 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~----------- 454 (1084)
+...+..++|+|||++|++++.+ .|.+|++. +++.... .....+ +.+.+++|+|||+.+++++++
T Consensus 38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~-~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~ 114 (365)
T 1jof_A 38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHE-ASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF 114 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEE-EEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEe-eEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence 34578899999999999999888 89999997 7654321 111111 235678999999853455553
Q ss_pred --CCCcEEEEECC-CCceeeEec----cCCCcEEEEeecccCCCcEEEEEec-CCeEEEEECC-CCCceE--eec--CCC
Q 001403 455 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD-SLGARV--DYD--APG 521 (1084)
Q Consensus 455 --~d~~i~vwd~~-~g~~~~~~~----~h~~~v~~~~~~~~~~~~~l~s~s~-dg~i~iwd~~-~~~~~~--~~~--~~~ 521 (1084)
.++++.+|++. +|+....+. .+...+.+++|+| +|+++++++. ++.|++|+++ +++... .+. .+.
T Consensus 115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g 192 (365)
T 1jof_A 115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG 192 (365)
T ss_dssp SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence 68999999997 566554443 2556788999954 7777777654 6899999998 555432 232 235
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--CceEee---eeecccc----ccC------ceEEEE-EcCCCCEE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQL----QHN------SVSVVH-FDTAKDQI 585 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~--~~~~~~---~~~~~~~----~~~------~v~~~~-~s~~~~~l 585 (1084)
..+..++|+|||++++++.. .++.|.+|+.. +++... .+..... +.. .+..++ |+|||++|
T Consensus 193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l 269 (365)
T 1jof_A 193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM 269 (365)
T ss_dssp CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence 67899999999999988753 24568887654 565432 2221110 011 478899 99999998
Q ss_pred EEEECC-C-----cEEEEECC-CCeEEEE---EcCCCCCCCcceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001403 586 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES 646 (1084)
Q Consensus 586 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~~~~l~~~~~d-g~i~iwd~~~~ 646 (1084)
+++..+ + .|.+|++. +++.... ..... .....++|+| ||++|+++..+ +.|.+|++...
T Consensus 270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 876543 2 89999996 6765542 22222 2356889999 89999998864 89999998765
No 168
>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...
Probab=99.76 E-value=5.3e-16 Score=172.47 Aligned_cols=313 Identities=10% Similarity=0.099 Sum_probs=211.5
Q ss_pred CCcEEEEEe------cCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEee------CCCCCeeEEEecCCCc
Q 001403 490 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG 557 (1084)
Q Consensus 490 ~~~~l~s~s------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~------~~~~~~~i~~wd~~~~ 557 (1084)
++.+++... .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445565553 4789999999888877666655444 8999999999998863 1223567999999999
Q ss_pred eEeeeeecccc---ccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEE-EcCCCCCCCcceEEEecCC-CEEE
Q 001403 558 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA 630 (1084)
Q Consensus 558 ~~~~~~~~~~~---~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~~-~~l~ 630 (1084)
+.+..+..... +......++++|||++++++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 98887764310 1234667899999999999863 68999999999998887 65322 2335677765 6778
Q ss_pred EEECCCeEEEEEcCC-CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccccccee
Q 001403 631 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF 709 (1084)
Q Consensus 631 ~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~ 709 (1084)
+.+.||.+.+|+... ++...... ...+|+...
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~ 200 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD 200 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence 888999999998764 32221100 001111100
Q ss_pred ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCc
Q 001403 710 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 789 (1084)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1084)
.. ..+.+++++..++..+.++.+.++++....... +..|+......... ..
T Consensus 201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~~~-~~- 251 (361)
T 2oiz_A 201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDKAK-NW- 251 (361)
T ss_dssp -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHHHT-TC-
T ss_pred -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccccc-cc-
Confidence 00 011224555556666667777777764322100 01121111000000 00
Q ss_pred CCCCCCCccEEEecCCCCEEEEEe------------CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC
Q 001403 790 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 857 (1084)
Q Consensus 790 ~~~~~~~v~~l~~s~dg~~l~~~s------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d 857 (1084)
.......++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| |+++|++++.
T Consensus 252 ---~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~- 324 (361)
T 2oiz_A 252 ---VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG- 324 (361)
T ss_dssp ---EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred ---ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence 011223478999988877653 2479999999999999998776 99999999 8889998887
Q ss_pred CeEEEEEcCCc--eeeeeecccccCEEEEEEcCCCC
Q 001403 858 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN 891 (1084)
Q Consensus 858 g~i~iwd~~~~--~~~~~l~~h~~~V~~l~~spd~~ 891 (1084)
++|.+||..++ +.+.++..+......++++|||+
T Consensus 325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999999999 99999877778889999999986
No 169
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.76 E-value=9e-17 Score=182.61 Aligned_cols=301 Identities=11% Similarity=0.002 Sum_probs=194.5
Q ss_pred cceeeecccCCCC-----ceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcC
Q 001403 324 KTVAQTLIEGSSS-----PMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP 398 (1084)
Q Consensus 324 ~~~~~~l~~h~~~-----V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fsp 398 (1084)
...++.|..+... +..++|||||++||+...+ .| ...|.+||+.++.... +..++......+.|||
T Consensus 20 g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~--~g----~~~l~~~d~~~~~~~~---l~~~~~~~~~~~~~sp 90 (396)
T 3c5m_A 20 QVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDF--DG----NRNYYLLNLETQQAVQ---LTEGKGDNTFGGFIST 90 (396)
T ss_dssp CCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECT--TS----SCEEEEEETTTTEEEE---CCCSSCBCTTTCEECT
T ss_pred CcceEEEecCCCCccceeeecCcCCCCCCEEEEEEec--CC----CceEEEEECCCCcEEE---eecCCCCccccceECC
Confidence 3344555555333 7889999999999886432 12 1578889988765321 1222332333488999
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeE-------------------EEeecCCCcEEEEEE-----e
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQISVITC-----G 454 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~-------------------l~~s~d~~~l~l~s~-----~ 454 (1084)
||++|++++.++.|.+||+.+++... ....+...... ++|+|+++. ++.. .
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~ 165 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTN 165 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTC
T ss_pred CCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCC
Confidence 99999999999999999999886432 22223322222 356788873 3332 4
Q ss_pred CCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCC-CCeEEEE
Q 001403 455 DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAP-GLGCTRM 527 (1084)
Q Consensus 455 ~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~-~~~i~~~ 527 (1084)
.+..|.+||+.+++..... .+...+..+.|+|. ++..|+..+.+ ..|.+|+++........... ...+..+
T Consensus 166 ~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~ 243 (396)
T 3c5m_A 166 PTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHE 243 (396)
T ss_dssp CCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEE
T ss_pred CcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccce
Confidence 5678999999988765444 46777888888652 45566665543 35888888765443333322 3368889
Q ss_pred EEcCCCCEEEEEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcC-CCCEEEEEE----------------
Q 001403 528 AYSANGRRLFSCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG---------------- 589 (1084)
Q Consensus 528 ~~s~d~~~l~~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~~~~---------------- 589 (1084)
+|+|||+.|+.++.... ..+.|++||+.+++........ ... +.|+| +++.+++++
T Consensus 244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~-----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~ 317 (396)
T 3c5m_A 244 FWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVMP-----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIE 317 (396)
T ss_dssp EECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEECC-----SEE-EEEECSSSSEEEEEECCC----------CCC
T ss_pred EECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeCC-----CCC-CCccCCCCceEEEecCCcceeeccccccccC
Confidence 99999998887764321 1245999999988765433221 123 88999 999888755
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCC--------CCcceEEEecCCCEEEEEEC-CCeEEEE--EcCCC
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES 646 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~~~~l~~~~~-dg~i~iw--d~~~~ 646 (1084)
.++.|++||+.+++........... ..+..++|+|||+.|+.++. ++...+| ++.++
T Consensus 318 ~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~ 385 (396)
T 3c5m_A 318 NDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES 385 (396)
T ss_dssp CCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred CCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence 3478999999888754333222110 01456889999999888775 4544444 44444
No 170
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.72 E-value=7.3e-15 Score=171.29 Aligned_cols=329 Identities=11% Similarity=0.100 Sum_probs=224.1
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC--CCeEEEEEcCCCCCCCcceEEEe
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
++.|.++|..+++.+..+.... .+..+.|+||++++++++.|+.|.+||+. +++.+..+..... ...++|+
T Consensus 176 ~~~V~viD~~t~~v~~~i~~g~----~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~---P~~ia~s 248 (567)
T 1qks_A 176 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSE---ARSIETS 248 (567)
T ss_dssp TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSE---EEEEEEC
T ss_pred CCeEEEEECCCCeEEEEEeCCC----CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCC---CceeEEc
Confidence 6779999999999998887543 56789999999999999999999999996 8888888775433 4789999
Q ss_pred ----cCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecc
Q 001403 624 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA 698 (1084)
Q Consensus 624 ----~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~ 698 (1084)
|||++++++.. ++.+.++|..+.+.+..+......+ ++.
T Consensus 249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~------- 292 (567)
T 1qks_A 249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ------- 292 (567)
T ss_dssp CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence 69998887765 5999999988877765543110000 000
Q ss_pred cCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe-ecCCceEEeeccCCccCcCcccceecCCeeecC
Q 001403 699 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 777 (1084)
Q Consensus 699 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1084)
.. .....+..+.+++++..++.. ...|.|.++|+..... +.+..
T Consensus 293 -------~~----------------~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------~~v~~- 337 (567)
T 1qks_A 293 -------EY----------------HPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTE- 337 (567)
T ss_dssp -------CE----------------ESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEE-
T ss_pred -------cc----------------cCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------ceeee-
Confidence 00 011245667777776655444 4457888777643210 00110
Q ss_pred CCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC-----CCCCeEEEEEcCCCCcE
Q 001403 778 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNV 850 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~ 850 (1084)
+ .......++.|+|+|+++++++ +++|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+
T Consensus 338 ----------i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v 403 (567)
T 1qks_A 338 ----------I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPV 403 (567)
T ss_dssp ----------E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEE
T ss_pred ----------e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcE
Confidence 0 1233456789999999998876 58999999999998877654 22212222 67833666
Q ss_pred EEEEe-CCCeEEEEEcCC-------ceeeeeecccccCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCce---
Q 001403 851 IAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--- 912 (1084)
Q Consensus 851 la~g~-~dg~i~iwd~~~-------~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~--- 912 (1084)
++++. .+++|.++|..+ .+.+.++......-..+.++||+++|..... ..+|.++|+.+.+.
T Consensus 404 ~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~ 483 (567)
T 1qks_A 404 WATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGS 483 (567)
T ss_dssp EEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSS
T ss_pred EEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCccccccc
Confidence 66654 568999999988 5677777755443345788999999987663 35899999987511
Q ss_pred -eeeeeeecC--CCCccCCCCceEEEEccCCCEEEEE-e-----CCeEEEEEcCCcceeeEee
Q 001403 913 -QTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV-H-----ETHLAIYEAEELTCLKQWF 966 (1084)
Q Consensus 913 -~~~~~~~~~--~~~~~~~~~v~~~~~s~dg~~la~~-~-----d~~i~vwd~~~~~~~~~~~ 966 (1084)
.....+... .+.......+..+.|+|||+++.++ . ++.|.|+|..+++.+..+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~ 546 (567)
T 1qks_A 484 DPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK 546 (567)
T ss_dssp CCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred CCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence 111222210 0000001258899999999998875 2 6889999999999877644
No 171
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.71 E-value=1.9e-15 Score=168.15 Aligned_cols=270 Identities=9% Similarity=0.097 Sum_probs=182.2
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC---C--
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---H-- 410 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---g-- 410 (1084)
.+..+++ ||+++|................|.+||+.++... . + ..+..++|||||++||.++.+ +
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~---~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~ 85 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARR---F-I----ENATMPRISPDGKKIAFMRANEEKKVS 85 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEE---E-E----ESCEEEEECTTSSEEEEEEEETTTTEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceE---E-c----ccCCCeEECCCCCEEEEEEeccCCCcc
Confidence 5677888 9999998543221111112378999999876532 1 2 468899999999999988754 3
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC---------------------------CCcEEEEE
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---------------------------DKTIKVWD 463 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~---------------------------d~~i~vwd 463 (1084)
.|.+||+.+++... +..+.. +..++|+|||+ .|+.++. ...|.+||
T Consensus 86 ~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d 158 (347)
T 2gop_A 86 EIWVADLETLSSKK----ILEAKN-IRSLEWNEDSR--KLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFD 158 (347)
T ss_dssp EEEEEETTTTEEEE----EEEESE-EEEEEECTTSS--EEEEEEECCCC---------CCCC---------CEEEEEEEE
T ss_pred eEEEEECCCCceEE----EEcCCC-ccceeECCCCC--EEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEE
Confidence 47888888875432 333344 99999999999 4555442 25799999
Q ss_pred CCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCC-------eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEE
Q 001403 464 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 464 ~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l 536 (1084)
+.+++.+..+.. . .+..++|+ ++| +++++..++ ...+|.++ ......+..+ ..+..+ +|||+.|
T Consensus 159 ~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--spdg~~l 229 (347)
T 2gop_A 159 TESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--DSDGERI 229 (347)
T ss_dssp TTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--EECSSCE
T ss_pred CCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeE--CCCCCEE
Confidence 999887555554 3 67788885 467 777776542 44556555 3333333333 344443 9999999
Q ss_pred EEEeeCCC----CCeeEEEecCCCceEeeeeeccccccCceEE-EEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC
Q 001403 537 FSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 537 ~~~~~~~~----~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~-~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
+.++.... ....|++|| +++.......+. ..+.. +.|+ ++ .+++++.++.+++| +.+++.......
T Consensus 230 ~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~- 300 (347)
T 2gop_A 230 LLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKG- 300 (347)
T ss_dssp EEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECS-
T ss_pred EEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecC-
Confidence 88775331 235799999 666555444444 56775 8999 88 88889999999999 877766554433
Q ss_pred CCCCCcceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANENRI-KILETP 644 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~dg~i-~iwd~~ 644 (1084)
...+.+++|+| .++++++.++.. .+|...
T Consensus 301 --~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 301 --RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp --SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred --CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 23478899999 677777766654 777665
No 172
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.70 E-value=1.9e-15 Score=184.31 Aligned_cols=295 Identities=10% Similarity=-0.028 Sum_probs=196.1
Q ss_pred eecccCCCCceEEEEcCCCceeeee--cccccCccccccceEEEEEcCCccccceeeeecCCCCCeE---------EEEE
Q 001403 328 QTLIEGSSSPMSMDFHPVQHTLLLG--LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN---------RVVW 396 (1084)
Q Consensus 328 ~~l~~h~~~V~~v~~spdg~~las~--~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~---------~v~f 396 (1084)
..+.+|...|..++||+++.++++. ..+ +...||......... .+..|...+. ..+|
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~ 84 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEA---------GRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAG 84 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTT---------TEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccC---------CcEEEEEECCCCCcc---eeCCCCccccccccccCCcccee
Confidence 4567899999999999998777775 223 678899864333221 2455655665 5666
Q ss_pred c--CCCCE-EEEEeC-CCEEEEEEcc--C-Cccccceeeeec-----ccccEeEEEeecCCCcEEEEEEeCC--------
Q 001403 397 S--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD-------- 456 (1084)
Q Consensus 397 s--pdg~~-las~~~-dg~v~iwd~~--~-~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~l~l~s~~~d-------- 456 (1084)
+ |||++ ||.++. +..|.+|++. + ++ .+ .+.. |...+.+++|||||+ .|++++.+
T Consensus 85 ~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~~~~~~~ 158 (662)
T 3azo_A 85 VPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFTGEGPSD 158 (662)
T ss_dssp ECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEECSSSTTC
T ss_pred eeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEecccCCCCCC
Confidence 5 99999 887654 4556666665 3 43 22 3444 677899999999999 67776665
Q ss_pred --CcEEEEECCC------CceeeEec-cCCCcEEEEeecccCCCcEEEEEecCC--------eEEEEECC-CC---CceE
Q 001403 457 --KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDG--------KIKAWLYD-SL---GARV 515 (1084)
Q Consensus 457 --~~i~vwd~~~------g~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg--------~i~iwd~~-~~---~~~~ 515 (1084)
..|.+||+.+ +. ...+. .+...+..++| ++||++|+.++.++ .|++||++ ++ ....
T Consensus 159 ~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~ 235 (662)
T 3azo_A 159 VRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRT 235 (662)
T ss_dssp EEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEE
T ss_pred ceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEE
Confidence 5899999988 54 44555 66677777888 45788998887553 79999998 45 2333
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccC-----ceEEEEEcCCCCEEEEEEC
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~-----~v~~~~~s~~~~~l~~~~~ 590 (1084)
....+...+..++|+|||++++++.. ++...|++||+.+++.......+..... .+..++|+|++..+++++.
T Consensus 236 l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~ 313 (662)
T 3azo_A 236 LLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK 313 (662)
T ss_dssp EEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS
T ss_pred eCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc
Confidence 33344668899999999995555432 3344789999878876555443331000 1467889999999999988
Q ss_pred CCcEEEE--ECCCCeEEEEEcCCCCCCCcceEEEecCCCE--EEEEECCC--eEEEEEcCCCCeee
Q 001403 591 DHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSVD 650 (1084)
Q Consensus 591 dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~--l~~~~~dg--~i~iwd~~~~~~~~ 650 (1084)
+.+++| |..+++ +..+..+.. .+..+ +++++.. ++.++.+. .|.++++.+++...
T Consensus 314 -~~~~l~~~d~~~~~-~~~l~~~~~--~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~ 374 (662)
T 3azo_A 314 -GAAVLGILDPESGE-LVDAAGPWT--EWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRART 374 (662)
T ss_dssp -SSCEEEEEETTTTE-EEECCSSCC--EEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEEE
T ss_pred -CccEEEEEECCCCc-EEEecCCCC--eEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceEE
Confidence 999999 666665 555554422 34555 1444443 34444454 45556666665433
No 173
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=99.70 E-value=5.5e-14 Score=163.90 Aligned_cols=325 Identities=13% Similarity=0.148 Sum_probs=221.1
Q ss_pred CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC--CCCeeeecccccc
Q 001403 580 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD 657 (1084)
Q Consensus 580 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~ 657 (1084)
|.+..+++...++.|.++|..+++.+..+.... .+..++|+|||+++++++.++.|.+||+. +.+.+..+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~---- 237 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK---- 237 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence 444566667789999999999999999887543 25689999999999999999999999985 444332221
Q ss_pred ceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEe--
Q 001403 658 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-- 735 (1084)
Q Consensus 658 ~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s-- 735 (1084)
.......++|+
T Consensus 238 -------------------------------------------------------------------~G~~P~~ia~s~~ 250 (567)
T 1qks_A 238 -------------------------------------------------------------------IGSEARSIETSKM 250 (567)
T ss_dssp -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred -------------------------------------------------------------------cCCCCceeEEccc
Confidence 01234578899
Q ss_pred --cCCCeEEEeec-CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCC------CC-CCCccEEEecCC
Q 001403 736 --NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN 805 (1084)
Q Consensus 736 --~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d 805 (1084)
|||++++++.. ++.+.++|....+ .+......+. .| ...+..+..+++
T Consensus 251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~----------------------~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~ 308 (567)
T 1qks_A 251 EGWEDKYAIAGAYWPPQYVIMDGETLE----------------------PKKIQSTRGMTYDEQEYHPEPRVAAILASHY 308 (567)
T ss_dssp TTCTTTEEEEEEEETTEEEEEETTTCC----------------------EEEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred cCCCCCEEEEEEccCCeEEEEECCCCc----------------------EEEEEeccccccccccccCCCceEEEEEcCC
Confidence 69998887766 4788887744322 1111111000 01 236778899998
Q ss_pred CCEEEEEe--CCeEEEEEcCCceeE--EEEcCCCCCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCceeeeeecc----
Q 001403 806 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG---- 876 (1084)
Q Consensus 806 g~~l~~~s--dg~i~vwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~~~~~l~~---- 876 (1084)
+..++... .|.|.++|..+.+.. ..+. .......+.|+| ++++++++. .++.|.++|+.+++.+..+.-
T Consensus 309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 87666554 599999999865432 2222 344577889999 788776655 678999999999988766543
Q ss_pred -cccCEEEEEEcCCCCEE-EEEe-CCCcEEEEeCCCCc-----eeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-
Q 001403 877 -HSKRVTGLVFSDALNIL-VSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 947 (1084)
Q Consensus 877 -h~~~V~~l~~spd~~~l-~s~s-~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~- 947 (1084)
|.+.-..+ ++|++..+ +++. .+++|.++|..+++ .+....+....+ .-..+.++||++++.+..
T Consensus 387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~ 459 (567)
T 1qks_A 387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT 459 (567)
T ss_dssp BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence 43322222 67875544 4443 46899999998732 111122222211 224578899999999854
Q ss_pred -------CCeEEEEEcCCc-----cee-eEee-------cCCCCCEEEEEEccCCCEEEEEe-----CCCcEEEEEcCCC
Q 001403 948 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1002 (1084)
Q Consensus 948 -------d~~i~vwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~i~vwd~~~~ 1002 (1084)
.++|.++|+.+. ... ..+. ..-...+..+.|++||+++.++. .++.|.|+|..++
T Consensus 460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~ 539 (567)
T 1qks_A 460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL 539 (567)
T ss_dssp TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence 358999999877 211 2211 01245789999999999988763 3799999999999
Q ss_pred ceeEEec
Q 001403 1003 EVQCRIL 1009 (1084)
Q Consensus 1003 ~~~~~~~ 1009 (1084)
+++.++.
T Consensus 540 ~~~~~i~ 546 (567)
T 1qks_A 540 ELKHVIK 546 (567)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9998877
No 174
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.70 E-value=6.3e-16 Score=175.59 Aligned_cols=244 Identities=9% Similarity=-0.010 Sum_probs=166.1
Q ss_pred eEEEEEcCCCCEEEEEeCC---CEEEEEEccCCccccceeeeeccccc-EeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 391 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~d---g~v~iwd~~~~~~~~~~~~l~~h~~~-V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+.+++|||||++||..... ..|.+||+.+++... +..+... ...+.|+|||+ .|+.++.++.|.+||+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~ 111 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET 111 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence 7788999999999888653 468899998876432 3333333 33478999999 788888888999999999
Q ss_pred CceeeEeccCCCcEEE---Eee--------------cccCCCcEEEEE-----ecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 467 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 467 g~~~~~~~~h~~~v~~---~~~--------------~~~~~~~~l~s~-----s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
++.......+...... +++ ..+++++.++.. ..+..|.+||+.+++..... .....+
T Consensus 112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~ 190 (396)
T 3c5m_A 112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL 190 (396)
T ss_dssp CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence 8876555544443322 111 113344444433 35667999999887654443 345578
Q ss_pred EEEEEcC-CCCEEEEEeeCCCC--CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEE
Q 001403 525 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI 596 (1084)
Q Consensus 525 ~~~~~s~-d~~~l~~~~~~~~~--~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~i 596 (1084)
..+.|+| +++.++.++..... ...|++||+.+++......... ...+..++|+|++++|+.++.+ +.|++
T Consensus 191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~ 268 (396)
T 3c5m_A 191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK 268 (396)
T ss_dssp EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence 8999999 88888877642210 1469999987765443333111 1357889999999988776543 44999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCCe
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS 648 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~----------------~dg~i~iwd~~~~~~ 648 (1084)
||+.+++......... .. +.|+| ||+++++++ .++.|++||..+++.
T Consensus 269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 9999887655443221 23 89999 999888765 347899999987753
No 175
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.68 E-value=1.1e-14 Score=160.05 Aligned_cols=248 Identities=12% Similarity=0.080 Sum_probs=181.7
Q ss_pred CCCccEEEecCCCCEEEEEeCC-------------------------eEEEEEcCCceeEEEEc-CCCCCeEEEEEcCCC
Q 001403 794 QEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPHD 847 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg-------------------------~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d 847 (1084)
-..+.+++++|+|+++++...+ .|.+||..+++....+. .+-.....++++| +
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-~ 101 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-D 101 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-T
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-C
Confidence 4568999999999999887643 69999999999877765 3445789999999 8
Q ss_pred CcEEEEEeCCCeEEEEEcCCce-eeeee---------cccccCEEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCceeee
Q 001403 848 NNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~-~~~~l---------~~h~~~V~~l~~sp-d~~~l~s~s-~dg~I~iwd~~~~~~~~~ 915 (1084)
++++++...++.|++||..... .+..+ .++......++|+| ++.++++.+ .++.|++|+.. +.....
T Consensus 102 g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~~ 180 (329)
T 3fvz_A 102 GNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVTQ 180 (329)
T ss_dssp SCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEEE
T ss_pred CCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEEE
Confidence 8888888889999999986442 44554 34555789999999 888888886 68999999954 332221
Q ss_pred eeeecC-----CCCccCCCCceEEEEccC-CCEEEEE-eCCeEEEEEcCCcceeeEee-cCCCCCEEEEEEcc------C
Q 001403 916 RSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------D 981 (1084)
Q Consensus 916 ~~~~~~-----~~~~~~~~~v~~~~~s~d-g~~la~~-~d~~i~vwd~~~~~~~~~~~-~~h~~~v~~l~fs~------d 981 (1084)
...... .+.. .....++++|+ |.++++. .++.|++|+..+|+.+..+. ..+...+.+++|+| +
T Consensus 181 ~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~ 257 (329)
T 3fvz_A 181 WGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVN 257 (329)
T ss_dssp ECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEE
T ss_pred eccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEeC
Confidence 111110 0111 24789999999 5555553 67899999999898887753 23567888999999 3
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
|+..++...+..|++|++.+|+++..+.... ...-.+..++++| ||..+++...++.|++|++..
T Consensus 258 g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~-------~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 258 GKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR-------KHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp CCCCTTCSCCCCEEEEETTTCCEEEEECCSS-------SCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEE
T ss_pred CCEEeccCCCcEEEEEEcCCCeEEEEEcCCC-------CccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCc
Confidence 3333333345589999999999987765211 1112456789999 578888888999999999854
No 176
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.67 E-value=3.5e-14 Score=152.90 Aligned_cols=241 Identities=10% Similarity=0.105 Sum_probs=174.8
Q ss_pred CCCCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcC------CCCCeEEEEEc-CCCCcEEEEEeC-CCeEEEE
Q 001403 793 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILIY 863 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~la~g~~-dg~i~iw 863 (1084)
+-..+.+++++++|+++++.. ++.|.+||.. ++....+.. +...+..++++ + +++++++... ++.|++|
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~~ 105 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQIY 105 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEEE
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEEE
Confidence 456688999999999877765 6899999987 666666642 33568899995 5 7777776644 8899999
Q ss_pred EcCCceeeeeec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCE
Q 001403 864 NARSSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 864 d~~~~~~~~~l~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 942 (1084)
| .+++.+..+. .+...+.+++++|+|+++++...++.|.+||... +... .+... ++. ..+..++++++|++
T Consensus 106 d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~~-~~~---~~p~~i~~~~~g~l 177 (286)
T 1q7f_A 106 N-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGCS-KHL---EFPNGVVVNDKQEI 177 (286)
T ss_dssp C-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEECT-TTC---SSEEEEEECSSSEE
T ss_pred C-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCCC-Ccc---CCcEEEEECCCCCE
Confidence 9 5677766664 3456789999999999888888889999999764 2211 11111 111 25789999999997
Q ss_pred EEEE-eCCeEEEEEcCCcceeeEeec-CCCCCEEEEEEccCCCEEEEEeCCC-cEEEEEcCCCceeEEeccccccCCCCc
Q 001403 943 FLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTTS 1019 (1084)
Q Consensus 943 la~~-~d~~i~vwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1019 (1084)
+++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+|+. +++.+..+...
T Consensus 178 ~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~-------- 247 (286)
T 1q7f_A 178 FISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESK-------- 247 (286)
T ss_dssp EEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEES--------
T ss_pred EEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEccc--------
Confidence 7774 57899999974 555554332 2236789999999999888887776 9999995 46666555421
Q ss_pred ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCC
Q 001403 1020 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1055 (1084)
Q Consensus 1020 ~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~ 1055 (1084)
.....+.+++++| ||+++++ +.|+.|++|++...
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 1112456788999 5765555 68999999998554
No 177
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=99.67 E-value=9.9e-15 Score=178.03 Aligned_cols=250 Identities=11% Similarity=0.001 Sum_probs=176.6
Q ss_pred ecCCCCCeEEEEEcCCCCEEEEE--eCCCEEEEEEccCCccccceeeeecccccEe---------EEEee--cCCCcEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV 450 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~las~--~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~d~~~l~l 450 (1084)
+.+|...+..++|++++-++++. +.++...||....+...+ .+..|...+. ...|+ |||+.+ |
T Consensus 19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l 94 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L 94 (662)
T ss_dssp HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence 55688999999999887777777 558889999975443333 4556666666 66666 999941 4
Q ss_pred EEEe-CCCcEEEEECC--CCceeeEecc-----CCCcEEEEeecccCCCcEEEEEecC----------CeEEEEECCCC-
Q 001403 451 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL- 511 (1084)
Q Consensus 451 ~s~~-~d~~i~vwd~~--~g~~~~~~~~-----h~~~v~~~~~~~~~~~~~l~s~s~d----------g~i~iwd~~~~- 511 (1084)
+.++ .+..|.+|++. ++.....+.. |...+.+++|+| ||+.|++++.+ ..|++||+++.
T Consensus 95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 172 (662)
T 3azo_A 95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA 172 (662)
T ss_dssp EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence 4443 35667777765 2034555655 667788899954 77899888877 57999999872
Q ss_pred ----CceEeec-CCCCeEEEEEEcCCCCEEEEEeeCCC----CCeeEEEecCC-Cc---eEeeeeeccccccCceEEEEE
Q 001403 512 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF 578 (1084)
Q Consensus 512 ----~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~----~~~~i~~wd~~-~~---~~~~~~~~~~~~~~~v~~~~~ 578 (1084)
.....+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++. ..+..+.|
T Consensus 173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~ 249 (662)
T 3azo_A 173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW 249 (662)
T ss_dssp TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence 2333444 44567888999999999998875432 23579999998 57 4444444444 67899999
Q ss_pred cCCCCEEEEEECCC--cEEEEECCCCeEEEEEcCCCCC------CCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 579 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 579 s~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
+|||+.+++++.++ .|++||..+++.......+... ..+..++|+|++++++++.. +.++||.+
T Consensus 250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 99999777777788 6777777677765444332211 11467899999999999988 88888844
No 178
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.66 E-value=7.2e-10 Score=137.44 Aligned_cols=585 Identities=9% Similarity=0.039 Sum_probs=337.1
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccc-eEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIR-NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~-~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
..|.++.-.++|.+-+. ..+ |-...+| .++.|........ . + ....|.++...++|.+.+ |+.+| +.
T Consensus 43 n~v~~I~qD~~G~lWig-T~~---GL~ryDG~~f~~~~~~~~~~~---~-l--~~n~I~~i~~d~~g~lWi-gT~~G-l~ 110 (795)
T 4a2l_A 43 STVFSIDQDKRGNMWFA-TYD---GVNKYDGYAFTVYQHNEDDPN---S-I--ANDISRIVKTDSQGRVWI-GTRDG-LS 110 (795)
T ss_dssp SCEEEEEECTTSCEEEE-ETT---EEEEECSSCEEEECCCTTCTT---S-C--SCSCEEEEEECTTSCEEE-EESSC-EE
T ss_pred ceeEEEEEcCCCCEEEe-ecC---cCcccCCCceEEEeCCCCCCC---c-c--cccceeEEEECCCCCEEE-EeCCc-hh
Confidence 37889998898854433 122 1111111 2233322110000 0 0 246799999999997665 45566 89
Q ss_pred EEEccCCccccceeeeecccc----cEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCc-EEEEeecc
Q 001403 414 LYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-VYSLCPHA 487 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~----~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~-v~~~~~~~ 487 (1084)
.||..+++.. .+..... .|.++...++|. +.+ ++. +.|..||..+++.......+ ... |.++...
T Consensus 111 ~yd~~~~~f~----~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d- 181 (795)
T 4a2l_A 111 RYDEEKDIFQ----NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYR- 181 (795)
T ss_dssp EEETTTTEEE----EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEE-
T ss_pred eeCCCCCeEE----eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEEC-
Confidence 9998876422 1221111 288999988887 444 343 55899998776543211111 112 7777663
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEee-cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
.++. +..++.++-+..|+..+.+..... ......|.++...++|.+.+... ..-+..||..+++........
T Consensus 182 -~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~ 254 (795)
T 4a2l_A 182 -QGDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTKEIKNYLHSP 254 (795)
T ss_dssp -ETTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTTEEEEECCCT
T ss_pred -CCCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCCeEEEeecCC
Confidence 3444 445666555888887765543221 12345688888888887665442 112899998877654332211
Q ss_pred ----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEECCCe
Q 001403 567 ----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 567 ----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
......|.++...++|...+ |+.+ -|.+||..++.......... ....|.++...++|.+ .+|+.++-
T Consensus 255 ~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-Wigt~~~G 331 (795)
T 4a2l_A 255 SNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-WLGTYFGG 331 (795)
T ss_dssp TCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-EEEESSSC
T ss_pred CCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-EEEECCCC
Confidence 11235699999988876544 5555 58999998876554332111 1235778888888864 45666677
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|..|+..+.... .... . +.
T Consensus 332 l~~~~~~~~~~~-~~~~----------~----------------------~~---------------------------- 350 (795)
T 4a2l_A 332 LNYYHPIRNRFK-NIRN----------I----------------------PY---------------------------- 350 (795)
T ss_dssp EEEECGGGGSSE-EECC----------C----------------------TT----------------------------
T ss_pred eEEeCCCcccce-EEcC----------C----------------------CC----------------------------
Confidence 777775533211 0000 0 00
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
+.......|.++...++|. |.+++.++-+..|+...+.. ..+....+. .. .. -....|
T Consensus 351 ---~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~----l~~~~v 408 (795)
T 4a2l_A 351 ---KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG----IGSNNI 408 (795)
T ss_dssp ---SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------C----CSCSCE
T ss_pred ---CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC----CCCccE
Confidence 0000234578888888887 55566665666666432211 111100000 00 00 124578
Q ss_pred cEEEecCCCC-EEEEEeCCeEEEEEcCCceeEEEEc----CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 798 PCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 798 ~~l~~s~dg~-~l~~~sdg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
.+++..++|+ +.+...++.+..||..+++...... .+...|.++...+ ++.+.+ |+.+ -+.+||..+++...
T Consensus 409 ~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~~~~~~~~ 485 (795)
T 4a2l_A 409 KAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNPEQRSFTT 485 (795)
T ss_dssp EEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEETTTTEEEE
T ss_pred EEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeCCCCeEEE
Confidence 8999999998 5554446789999998876543322 1345789999988 676555 4454 58999988776433
Q ss_pred eecc------cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC-CCCccCCCCceEEEEccCCCEEEE
Q 001403 873 KLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 873 ~l~~------h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.... +...|.++...++|.+.+... . -|..||..++.. . +... .........|.++...++|.+.+.
T Consensus 486 ~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~---~~~~~~~~~l~~~~i~~i~~d~~g~lWig 559 (795)
T 4a2l_A 486 IEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-Q---KASILPVSNVTKLFTNCIYEASNGIIWVG 559 (795)
T ss_dssp CCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-E---ECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred ccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-E---EecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence 2211 236799999999988776544 4 488999887543 1 1100 000111236889999999997766
Q ss_pred EeCCeEEEEEcCCcceeeEeecCC---CCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 946 VHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 946 ~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
+.. .|..||..+++... +...+ ...|.++...++|.+.+++ . +-|..|+..++... .+....-++. ..
T Consensus 560 T~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~~----~~ 630 (795)
T 4a2l_A 560 TRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQS----NQ 630 (795)
T ss_dssp ESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCSC----SC
T ss_pred eCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCcc----cc
Confidence 554 78899987665432 22111 4578999999999876654 4 45778998877654 3332222222 22
Q ss_pred eeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+...++..++ || .|..|+.+| +..+++..
T Consensus 631 f~~~~~~~~~-~G-~l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 631 FNTASYCRTS-VG-QMYFGGING-ITTFRPEL 659 (795)
T ss_dssp EEEEEEEECT-TS-CEEEEETTE-EEEECGGG
T ss_pred CccCceeECC-CC-eEEEecCCc-eEEEcHHH
Confidence 3334566666 34 566677777 45556543
No 179
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=99.65 E-value=1e-13 Score=149.29 Aligned_cols=246 Identities=11% Similarity=0.087 Sum_probs=177.4
Q ss_pred CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee---ecccccEeEEEee-cCCCcEEEEEEe-CCCcEE
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFS-APCKQISVITCG-DDKTIK 460 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s-~d~~~l~l~s~~-~d~~i~ 460 (1084)
++-..+.+++++|+|+++++...++.|.+||.+ ++.+...... .+|...+..++++ +++. ++++.. .++.|.
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~--l~v~~~~~~~~i~ 103 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGD--IIVTERSPTHQIQ 103 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTE--EEEEECGGGCEEE
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCe--EEEEcCCCCCEEE
Confidence 355678999999999988888889999999987 4333211100 1344578999995 6665 555553 388999
Q ss_pred EEECCCCceeeEecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCEEE
Q 001403 461 VWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 461 vwd~~~g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~ 537 (1084)
+|| .+++.+..+.. +...+..+++.+ +|.++++...++.|.+||.+ ++....+. .....+..++++++|+.++
T Consensus 104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v 179 (286)
T 1q7f_A 104 IYN-QYGQFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFI 179 (286)
T ss_dssp EEC-TTSCEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred EEC-CCCcEEEEecCccCCCceEEEEeC--CCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence 999 67877776643 445788898854 66788887888999999864 33333333 3334688999999998766
Q ss_pred EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC-cEEEEECCCCeEEEEEcCCCCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-VIKIWDMNKVQLLTTIDAGGGLPE 616 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-~i~iwd~~~~~~~~~~~~~~~~~~ 616 (1084)
+... ++.|.+||.. ++.+..+.... +...+..++++++++.+++...++ .|.+||. +++.+..+..+.....
T Consensus 180 ~~~~----~~~i~~~~~~-g~~~~~~~~~g-~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~ 252 (286)
T 1q7f_A 180 SDNR----AHCVKVFNYE-GQYLRQIGGEG-ITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQ 252 (286)
T ss_dssp EEGG----GTEEEEEETT-CCEEEEESCTT-TSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSC
T ss_pred EECC----CCEEEEEcCC-CCEEEEEccCC-ccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCc
Confidence 6543 5679999974 55555554321 114688999999998888887776 9999995 5667777665444334
Q ss_pred cceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 617 NPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 617 v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
+..++++|+|+++++ +.++.|++|+....
T Consensus 253 ~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 253 CFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp EEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred ceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 678999999986666 67899999998654
No 180
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=99.64 E-value=2.8e-14 Score=156.77 Aligned_cols=245 Identities=8% Similarity=-0.007 Sum_probs=179.9
Q ss_pred CCeEEEEEcCCCCEEEEEeCC------------------------CEEEEEEccCCccccceeeee-cccccEeEEEeec
Q 001403 389 VSVNRVVWSPDGSLLGVAYSK------------------------HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSA 443 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~d------------------------g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~ 443 (1084)
..+.+++++|+|+++++...+ +.|.+||..+++.+. .+. ++......+++++
T Consensus 24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~p~gia~d~ 100 (329)
T 3fvz_A 24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQ---SSGKNLFYLPHGLSIDT 100 (329)
T ss_dssp SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEE---EECTTTCSSEEEEEECT
T ss_pred CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEe---ccCCCccCCceEEEECC
Confidence 579999999999999888777 479999999887543 222 4455788999999
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCc-eeeEe---------ccCCCcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGS-RTYSF---------EGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLG 512 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~-~~~~~---------~~h~~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~ 512 (1084)
+|+ ++++...++.|++||..... .+..+ .++-.....+++++. ++.++++.+ .++.|++|+. .+.
T Consensus 101 ~g~--l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~-~g~lyv~d~~~~~~I~~~~~-~g~ 176 (329)
T 3fvz_A 101 DGN--YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPS-TGAVFVSDGYCNSRIVQFSP-SGK 176 (329)
T ss_dssp TSC--EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTT-TCCEEEEECSSCCEEEEECT-TSC
T ss_pred CCC--EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCC-CCeEEEEeCCCCCeEEEEcC-CCC
Confidence 999 78888889999999975442 55555 344557889999542 556777776 6899999994 444
Q ss_pred ceEeecCCC----------CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCC
Q 001403 513 ARVDYDAPG----------LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 582 (1084)
Q Consensus 513 ~~~~~~~~~----------~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 582 (1084)
....+.... .....++++|++..++++.. +++.|++||..+++.+..+.... ....+..++|+| +
T Consensus 177 ~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~---~~~~I~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~p-g 251 (329)
T 3fvz_A 177 FVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR---ENGRIQCFKTDTKEFVREIKHAS-FGRNVFAISYIP-G 251 (329)
T ss_dssp EEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET---TTTEEEEEETTTCCEEEEECCTT-TTTCEEEEEEET-T
T ss_pred EEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC---CCCEEEEEECCCCcEEEEEeccc-cCCCcceeeecC-C
Confidence 444442211 24789999999555554432 36679999999899888875432 225688999999 3
Q ss_pred CEEEEE-------ECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 583 DQILAA-------GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 583 ~~l~~~-------~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
..+.+. ..+..|++|+..+++.+..+.. .........++++|+|.++++...++.|++|+...
T Consensus 252 ~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~ 322 (329)
T 3fvz_A 252 FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE 322 (329)
T ss_dssp EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence 333332 3455899999999999988742 12334578999999998888888899999999764
No 181
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.64 E-value=4.7e-14 Score=172.83 Aligned_cols=288 Identities=10% Similarity=-0.016 Sum_probs=192.2
Q ss_pred CCCceeeeecccccCccccccceEEEEEcCCccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCCC-----EEEEE
Q 001403 344 PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLY 415 (1084)
Q Consensus 344 pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~dg-----~v~iw 415 (1084)
|||++++....+ .|.. .+.+.+.+...+..... ..+-.+|...+..++|||||++||.+..++ .|++|
T Consensus 81 ~dG~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~ 156 (710)
T 2xdw_A 81 KKGKRYFYFYNT--GLQN--QRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFM 156 (710)
T ss_dssp EETTEEEEEEEC--SSCS--SCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEE
T ss_pred EECCEEEEEEEc--CCce--EEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence 999999985443 1210 02334444333222110 012234555789999999999999886543 89999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCc----------------EEEEECCCCce----eeEecc
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT----------------IKVWDAVTGSR----TYSFEG 475 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~----------------i~vwd~~~g~~----~~~~~~ 475 (1084)
|+.+++.... .+ ....+..++|+|||+ .|+.++.++. |++|++.++.. +.....
T Consensus 157 d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~ 230 (710)
T 2xdw_A 157 KVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPD 230 (710)
T ss_dssp ETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTT
T ss_pred ECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCC
Confidence 9999875442 12 222367899999999 6666666655 99999988763 223333
Q ss_pred CCCcEEEEeecccCCCcEEEEEec-----CCeEEEEECCC------CC-ceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 476 HGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS------LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 476 h~~~v~~~~~~~~~~~~~l~s~s~-----dg~i~iwd~~~------~~-~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
|...+..+.| ++||++|+..+. +..|.+||+.+ +. ....+..+...+.. .|+++|+.|+..+...
T Consensus 231 ~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~ 307 (710)
T 2xdw_A 231 EPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRH 307 (710)
T ss_dssp CTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTT
T ss_pred CCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCC
Confidence 5566778888 557788887765 56899999976 32 34444444444443 5889999998887544
Q ss_pred CCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCc--EEEEECCCCeEEEEEcCCCCCCCcce
Q 001403 544 EGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPR 619 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~ 619 (1084)
.....|.+||+.++.. ...+..+. ....+..++|++++..+++...++. |++|++.+|+.+..+..+ ...+..
T Consensus 308 ~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~ 384 (710)
T 2xdw_A 308 SPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVG 384 (710)
T ss_dssp CTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCC--SSEEEE
T ss_pred CCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCC--CceEEE
Confidence 3466799999987742 23444443 0135778899877777788888875 566787778877777765 234678
Q ss_pred EEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001403 620 ICFNKNGTLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 620 v~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
++++|++..++.... .+.+.+||+.+++
T Consensus 385 ~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 385 YSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 889999887665433 4789999998775
No 182
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=99.63 E-value=3.4e-10 Score=140.38 Aligned_cols=535 Identities=8% Similarity=0.012 Sum_probs=319.6
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
..|.++...++|.+.+... +.+..||..+................|.++...++|.+.+.. .+| +..
T Consensus 88 n~I~~i~~d~~g~lWigT~-----------~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t-~~g-l~~ 154 (795)
T 4a2l_A 88 DISRIVKTDSQGRVWIGTR-----------DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLIST-PEG-LIM 154 (795)
T ss_dssp SCEEEEEECTTSCEEEEES-----------SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEE-TTE-EEE
T ss_pred cceeEEEECCCCCEEEEeC-----------CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEE-CCc-eEE
Confidence 4789999999998776531 447888876543221100000000128899999888766644 444 899
Q ss_pred EEccCCccccceeeeecc-ccc-EeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEe-ccCCCcEEEEeecccCCC
Q 001403 415 YAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h-~~~-V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~-~~h~~~v~~~~~~~~~~~ 491 (1084)
||..+++..... .++ ... |.++...+++. +.+ +..++.|..||..+++..... ..+...|.++... .++
T Consensus 155 ~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~--lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~~g 226 (795)
T 4a2l_A 155 FDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ--IYI-GTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQ--SPT 226 (795)
T ss_dssp EETTTTEEECSS---SCHHHHTCCEEEEEEETTE--EEE-EESSSCEEEEETTTCCEEECC----CCCEEEEEEE--ETT
T ss_pred EECCCCEEEecc---CCCCCCcceEEEEECCCCC--EEE-EECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEc--CCC
Confidence 998776422110 011 123 88898888886 344 555556899998877654321 1234568877763 344
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecC-------CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
. +..++.++-+..||..+......... ....|.++...++|...+... . -|.+||..+++......
T Consensus 227 ~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-----~-Gl~~~~~~~~~~~~~~~ 299 (795)
T 4a2l_A 227 R-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-----N-DLNIYHEGTDSFASYSS 299 (795)
T ss_dssp E-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-----S-CEEEEETTTTEEEEECC
T ss_pred C-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-----C-hhheEcCCCCeEEEEec
Confidence 4 44555554477888766443322111 235799999999988766542 1 28999988776544322
Q ss_pred c----cccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC--C--CCCCcceEEEecCCCEEEEEECCC
Q 001403 565 G----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 565 ~----~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
. .......|.++...++|. +..|+.++-|..|+..++......... . ....|.+++..++|. |.+|+.++
T Consensus 300 ~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~ 377 (795)
T 4a2l_A 300 NPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDG 377 (795)
T ss_dssp CTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSS
T ss_pred CCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCC
Confidence 1 112236799999988876 556777788999987665433222111 0 123477888888776 44577777
Q ss_pred eEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 637 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
-|..|+..+++........ ... .
T Consensus 378 Gl~~~~~~~~~~~~~~~~~---------------------------------~~~------------------------~ 400 (795)
T 4a2l_A 378 GLNLYNPITQRFTSYTLQE---------------------------------DES------------------------A 400 (795)
T ss_dssp CEEEECTTTCCEEEECCC--------------------------------------------------------------
T ss_pred CeEEEcCCCCcEEEEecCC---------------------------------CCc------------------------c
Confidence 7888887654321110000 000 0
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
. ......|.++...++|..|.+++.++-+.+|+...+.. ..+...... .....
T Consensus 401 -~----~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~~----------l~~~~ 453 (795)
T 4a2l_A 401 -R----GIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNSQ----------LVNEN 453 (795)
T ss_dssp ------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTSC----------CSCSC
T ss_pred -c----CCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCCC----------cCCCe
Confidence 0 00224678888888887455666655677766443211 111110000 13457
Q ss_pred ccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 797 VPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
|.++...++|.+.+... +.+.+||..+++....... ....|.++...+ ++++.+ |+. +-|..||..+++.
T Consensus 454 v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~~~~~~~~~ 529 (795)
T 4a2l_A 454 VYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSVFKQEGLDI 529 (795)
T ss_dssp EEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEEEEEETTEE
T ss_pred eEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEEEeCCCCeE
Confidence 88999999998776665 5688999887755432211 235789999988 776665 444 4588999887765
Q ss_pred eeeec-------ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 871 ISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 871 ~~~l~-------~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
.+. .+...|.++...++|.+.+... . -|..||..+++... +....+.. ...|.++...++|.+.
T Consensus 530 --~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~~d~~g~lW 600 (795)
T 4a2l_A 530 --QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDKQIKR---YNTTNGLP--NNVVYGILEDSFGRLW 600 (795)
T ss_dssp --EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTTEEEE---ECGGGTCS--CSCEEEEEECTTSCEE
T ss_pred --EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCCcEEE---eCCCCCCc--hhheEEEEECCCCCEE
Confidence 221 2446799999999988766443 4 48899988754322 22222221 1358889999999877
Q ss_pred EEEeCCeEEEEEcCCcceeeEeecCC---CCCE--EEEEEccCCCEEEEEeCCCcEEEEEcC
Q 001403 944 LLVHETHLAIYEAEELTCLKQWFPIS---SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v--~~l~fs~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
+++ ++.|..|+..+++.. .+.... ...+ .++...++|.+++ |+.+|.+ .++..
T Consensus 601 i~t-~~Gl~~~~~~~~~~~-~~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~Gl~-~~~p~ 658 (795)
T 4a2l_A 601 LST-NRGISCFNPETEKFR-NFTESDGLQSNQFNTASYCRTSVGQMYF-GGINGIT-TFRPE 658 (795)
T ss_dssp EEE-TTEEEEEETTTTEEE-EECGGGTCSCSCEEEEEEEECTTSCEEE-EETTEEE-EECGG
T ss_pred EEc-CCceEEEcCCCCcEE-EcCCcCCCccccCccCceeECCCCeEEE-ecCCceE-EEcHH
Confidence 766 566888888766543 222111 2222 4677788897665 5677744 45543
No 183
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.62 E-value=1.9e-13 Score=150.82 Aligned_cols=273 Identities=10% Similarity=0.027 Sum_probs=186.8
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY 415 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iw 415 (1084)
.|.+++|+|++..++....+ +.++.|.-. .. ..+.++...+.+++|+|+|++++++..++.|.+|
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~ 71 (333)
T 2dg1_A 7 DLPTLFYSGKSNSAVPIISE---------SELQTITAE---PW---LEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKI 71 (333)
T ss_dssp CCCBCCSCGGGGCSSCCCCG---------GGSCEEECE---EE---EEEESSCCCEEEEEECTTSCEEEEETTTCEEEEE
T ss_pred ccceeeecCCccceeEEeec---------ccCcccccc---ee---EEEeccCccccCcEECCCCCEEEEECCCCEEEEE
Confidence 67888999999988886555 777788221 11 1244566778999999999988888889999999
Q ss_pred EccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeEec--cCCCcEEEEeecccC
Q 001403 416 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKE 489 (1084)
Q Consensus 416 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~~--~h~~~v~~~~~~~~~ 489 (1084)
|.++++... ....+...+.+++|+++|+ ++++...+ +.|.+||.+++.....+. .+...+..+++.+
T Consensus 72 d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~-- 144 (333)
T 2dg1_A 72 NPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDS-- 144 (333)
T ss_dssp CTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECT--
T ss_pred eCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECC--
Confidence 998876432 1224567899999999998 66666655 689999988877653332 2455788888854
Q ss_pred CCcEEEEEec------CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceEeee
Q 001403 490 NIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRT 562 (1084)
Q Consensus 490 ~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~~~~ 562 (1084)
+|.++++... .+.|..++.+..+... +......+..++|+|+|+.++.+.. .++.|.+||..+ +.....
T Consensus 145 ~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~~~~g~~~~~ 220 (333)
T 2dg1_A 145 KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIALEDDGVTIQP 220 (333)
T ss_dssp TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSSSEEE
T ss_pred CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEecCCCcCccc
Confidence 6667776553 2455555554433322 2222235678999999997766542 245699999863 332221
Q ss_pred ee-----ccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCC----CCCcceEEEecCCCEEEEEE
Q 001403 563 YQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNKNGTLLAVIA 633 (1084)
Q Consensus 563 ~~-----~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~~~~l~~~~ 633 (1084)
+. ... ....+..++++++++.+++...++.|.+||. +++.+..+..... ...+.+++|+||++.|++++
T Consensus 221 ~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~ 298 (333)
T 2dg1_A 221 FGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICS 298 (333)
T ss_dssp EEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEE
T ss_pred ccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEe
Confidence 11 111 0135788999999998888888899999998 5666666654321 11468999999987777766
Q ss_pred CCC
Q 001403 634 NEN 636 (1084)
Q Consensus 634 ~dg 636 (1084)
.++
T Consensus 299 ~~g 301 (333)
T 2dg1_A 299 NDI 301 (333)
T ss_dssp ECG
T ss_pred Ccc
Confidence 653
No 184
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=99.61 E-value=3.1e-13 Score=150.18 Aligned_cols=285 Identities=11% Similarity=0.046 Sum_probs=176.6
Q ss_pred ceEEEEEcCCCCEEEEEE---------CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC---C--e
Q 001403 572 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---N--R 637 (1084)
Q Consensus 572 ~v~~~~~s~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d---g--~ 637 (1084)
.+....+ ||++++... .++.|++||+.+++.... ..+..++|+|||+.|+.++.+ + .
T Consensus 16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~ 86 (347)
T 2gop_A 16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE 86 (347)
T ss_dssp EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence 4566667 788877642 257899999998875443 236789999999999987754 2 3
Q ss_pred EEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCcccee
Q 001403 638 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 717 (1084)
Q Consensus 638 i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~ 717 (1084)
|.+|++.+++......
T Consensus 87 l~~~~~~~g~~~~l~~---------------------------------------------------------------- 102 (347)
T 2gop_A 87 IWVADLETLSSKKILE---------------------------------------------------------------- 102 (347)
T ss_dssp EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence 6666766543221110
Q ss_pred eccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCc
Q 001403 718 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 797 (1084)
Q Consensus 718 ~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 797 (1084)
... +..++|+|||+.|+.++.+.. .. .....+
T Consensus 103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------------------~~~~~~ 134 (347)
T 2gop_A 103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------------------EDFIFE 134 (347)
T ss_dssp -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------------------CCcEEE
Confidence 112 677889999988887765410 00 000011
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC-------eEEEEEcCCcee
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV 870 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg-------~i~iwd~~~~~~ 870 (1084)
..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++ ...||.+.+++.
T Consensus 135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~ 210 (347)
T 2gop_A 135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE 210 (347)
T ss_dssp --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence 122233344333222345799999998887455544 3 788999999 78 777776542 344444445554
Q ss_pred eeeecccccCEEEEEEcCCCCEEEEEeCCC--------cEEEEeCCCCceeeeeeeecCCCCccCCCCceE-EEEccCCC
Q 001403 871 ISKLEGHSKRVTGLVFSDALNILVSSGGDA--------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT 941 (1084)
Q Consensus 871 ~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~s~dg~ 941 (1084)
..+..+ ..+..+ +|||++|+.++.++ .|.+|| +++. .....++.. .+.. +.|+ ||
T Consensus 211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~~---~~~~~~~~s-dg- 274 (347)
T 2gop_A 211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVDR---GVGQAKIKD-GK- 274 (347)
T ss_dssp -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCCS---EEEEEEEET-TE-
T ss_pred -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCCc---ccCCccEEc-Cc-
Confidence 344445 556554 99999998887543 688888 4331 122222222 4665 8999 88
Q ss_pred EEEE-EeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcE-EEEEcCCCc
Q 001403 942 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1003 (1084)
Q Consensus 942 ~la~-~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i-~vwd~~~~~ 1003 (1084)
++++ ..++.++|| +.+++.. .+. .+...|.+++|+| .++++++.++.. .+|.+. ++
T Consensus 275 ~~~~~~~~~~~~l~-~~~g~~~-~~~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~ 332 (347)
T 2gop_A 275 VYFTLFEEGSVNLY-IWDGEIK-PIA-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE 332 (347)
T ss_dssp EEEEEEETTEEEEE-EESSSEE-EEE-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred EEEEEecCCcEEEE-EcCCceE-EEe-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence 6666 578899999 8766543 333 3477899999999 677777777765 888887 55
No 185
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=99.59 E-value=1.5e-13 Score=168.34 Aligned_cols=254 Identities=11% Similarity=0.016 Sum_probs=176.2
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||.++.+ .|.. ...|++||+.++...... +.+ ..+..++|||||+.|+.++.++.
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~--~G~~--~~~i~v~d~~tg~~~~~~--~~~--~~~~~~~wspDg~~l~~~~~~~~ 193 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSA--SGSD--WVTIKFMKVDGAKELPDV--LER--VKFSCMAWTHDGKGMFYNAYPQQ 193 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEE--TTCS--CEEEEEEETTTTEEEEEE--EEE--ECSCCEEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcC--CCCc--eEEEEEEECCCCCCCccc--ccC--cccceEEEEeCCCEEEEEEECCc
Confidence 455568899999999999997654 2211 138999999987654321 211 23678999999999999987765
Q ss_pred ----------------EEEEEccCCcccc-ceeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEECCC---
Q 001403 412 ----------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVT--- 466 (1084)
Q Consensus 412 ----------------v~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~~~--- 466 (1084)
|.+|++.+++... .+.....|...+..++|||||+. |+.++. +..|.+||+.+
T Consensus 194 ~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~l~~~d~~~~~~ 271 (710)
T 2xdw_A 194 DGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNRLWYCDLQQESN 271 (710)
T ss_dssp SSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCEEEEEEGGGSSS
T ss_pred cccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccEEEEEECccccc
Confidence 9999998876321 11122235566889999999994 444432 57899999987
Q ss_pred ---Cc-eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCc--eEeecCCC--CeEEEEEEcCCCC
Q 001403 467 ---GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--LGCTRMAYSANGR 534 (1084)
Q Consensus 467 ---g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~--~~~~~~~~--~~i~~~~~s~d~~ 534 (1084)
+. ....+..+...+... |++ +|..|+..+.. +.|.+||+.+... ...+..+. ..+..++|++++.
T Consensus 272 ~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 348 (710)
T 2xdw_A 272 GITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (710)
T ss_dssp SSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred ccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE
Confidence 53 456676676666553 544 45566555443 3699999987652 23333333 3688899987776
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCe
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~ 603 (1084)
++++... ++...|++||+.+|+.+..+..+. +.+..+.++|+++.++... ..+.|+.||+.+++
T Consensus 349 lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 349 LVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 6666654 335568899987888777777655 7788999999988776542 45789999998877
No 186
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.59 E-value=1.4e-13 Score=167.95 Aligned_cols=286 Identities=9% Similarity=-0.049 Sum_probs=183.4
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCCCCEEEEE-----eCCCEEE
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQ 413 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspdg~~las~-----~~dg~v~ 413 (1084)
.+|||++++....+ .|+. .+.+.+.+...+...... .+-.+|...+..++|||||++||.+ +.+.+|+
T Consensus 75 p~~dG~~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~ 150 (695)
T 2bkl_A 75 PSRRNGRFFYVRTH--KDKE--KAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLH 150 (695)
T ss_dssp CEEETTEEEEEEEC--TTCS--SCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEE
T ss_pred CEEECCEEEEEEEc--CCCe--EEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEE
Confidence 35899999986554 1110 023333333333211110 1123566689999999999999954 3456899
Q ss_pred EEEccCCccccceeeeecccccE--eEEEeecCCCcEEEEEEeCCCc-------------EEEEECCCCc----eeeEec
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNV--NDLAFSAPCKQISVITCGDDKT-------------IKVWDAVTGS----RTYSFE 474 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V--~~l~~s~d~~~l~l~s~~~d~~-------------i~vwd~~~g~----~~~~~~ 474 (1084)
+||+.+++.+.. .+...+ ..++|+|||+ .|+.++.|.. |++|++.++. .+....
T Consensus 151 v~dl~tg~~~~~-----~~~~~~~~~~~~wspDg~--~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~ 223 (695)
T 2bkl_A 151 VIDVDSGEWSKV-----DVIEGGKYATPKWTPDSK--GFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERT 223 (695)
T ss_dssp EEETTTCCBCSS-----CCBSCCTTCCCEECTTSS--EEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCC
T ss_pred EEECCCCCCcCC-----cccCcccccceEEecCCC--EEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecC
Confidence 999999875411 122222 6899999999 6777777665 9999999886 334444
Q ss_pred cCCCcEEEEeecccCCCcEEEEEecCC----eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 475 GHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 475 ~h~~~v~~~~~~~~~~~~~l~s~s~dg----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
.|...+.++.|+ +||++|+..+.++ .|.+|+..++.. ..+..+...+....+ ++|. ++..+.....+..|.
T Consensus 224 ~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~ 298 (695)
T 2bkl_A 224 GDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVF 298 (695)
T ss_dssp CCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCEEE
T ss_pred CCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCceEEEEe-cCCc-EEEEECCCCCCCEEE
Confidence 566678888885 5777887777665 566665544433 333333334455555 6777 665554333467899
Q ss_pred EecCCCceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceEEEecCC
Q 001403 551 EWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNG 626 (1084)
Q Consensus 551 ~wd~~~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~~ 626 (1084)
+||+.++.. ...+..+. ...+..++|+ ++..+++...|+..++|.+. +++....+..+. ...+..++++|++
T Consensus 299 ~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~ 374 (695)
T 2bkl_A 299 EVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPG-VGAASNLMGLEDL 374 (695)
T ss_dssp EEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSS-SSEECCCBSCTTC
T ss_pred EEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCC-CeEEEEeecCCCC
Confidence 999987753 33333321 2457888888 66777888899988888654 455566555432 2246678889999
Q ss_pred CEEEEEEC----CCeEEEEEcCCCC
Q 001403 627 TLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 627 ~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
..++.... .++|++||+.+++
T Consensus 375 ~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 375 DDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CEEEEEEcCCCCCCEEEEEECCCCc
Confidence 87775443 3789999998775
No 187
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.57 E-value=1.6e-08 Score=125.09 Aligned_cols=546 Identities=12% Similarity=0.099 Sum_probs=316.6
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceee-eec---ccccEeEEEeec--CCCcEEEEEEeCCCcEEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~-l~~---h~~~V~~l~~s~--d~~~l~l~s~~~d~~i~vw 462 (1084)
..|.++...++|..|-.|+.++-+..||..+++....... ... ....|.++.... +|. +..+..++.|..+
T Consensus 66 n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~ 142 (781)
T 3v9f_A 66 NELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYL 142 (781)
T ss_dssp SCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEE
T ss_pred cccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEE
Confidence 5799999999998455567773499999887643210000 000 123588888877 665 3335434568899
Q ss_pred ECCCCceeeEecc------CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee-------cCCCCeEEEEEE
Q 001403 463 DAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAY 529 (1084)
Q Consensus 463 d~~~g~~~~~~~~------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~ 529 (1084)
|..+++... +.. ....|.++... .++ .|..++.++-+..||..+....... ......|.++..
T Consensus 143 ~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~ 218 (781)
T 3v9f_A 143 DIATGKFTH-YNKSTVPALPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYK 218 (781)
T ss_dssp ETTTTEEEE-ESTTTCTTCSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEE
T ss_pred ECCCCeEEe-eccCcccCCCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEE
Confidence 987765432 321 13457777653 344 4555666656888887664332211 112346889999
Q ss_pred cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEE
Q 001403 530 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 530 s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~ 605 (1084)
.++|.+.+... . -+.+||..+++........ ......|.++...++|. +..|+..+-|.++|..++...
T Consensus 219 d~~g~lwigt~-----~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~ 291 (781)
T 3v9f_A 219 DTNGNIWIGTS-----K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFL 291 (781)
T ss_dssp CTTCCEEEEET-----T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---
T ss_pred cCCCCEEEEeC-----C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeee
Confidence 88888776542 2 3899998877654322211 11235688988887764 566676567889998876543
Q ss_pred EEEc-------CC-----CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeee
Q 001403 606 TTID-------AG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA 673 (1084)
Q Consensus 606 ~~~~-------~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~ 673 (1084)
.... .. -....|.++...++|. |-+|+.++-|..++........ ... .+
T Consensus 292 ~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~~------- 352 (781)
T 3v9f_A 292 LPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------SP------- 352 (781)
T ss_dssp ------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC--------------------
T ss_pred eeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------Cc-------
Confidence 3221 10 1123477888888776 4556666677777765432111 100 00
Q ss_pred eccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEe
Q 001403 674 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMW 753 (1084)
Q Consensus 674 ~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw 753 (1084)
.. ..+.......|.++...++|. |..++.++-+..|
T Consensus 353 ---------------~~----------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~ 388 (781)
T 3v9f_A 353 ---------------TQ----------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVF 388 (781)
T ss_dssp ----------------C----------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEE
T ss_pred ---------------cc----------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEE
Confidence 00 000000234577888888777 5555555556666
Q ss_pred eccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc-
Q 001403 754 RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM- 832 (1084)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~- 832 (1084)
+...... ..+... .......|.+++..++|.+.+...++.+..++..+++......
T Consensus 389 ~~~~~~~------------~~~~~~-----------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~ 445 (781)
T 3v9f_A 389 ENGKRVA------------IYNKEN-----------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELE 445 (781)
T ss_dssp ETTEEEE------------ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCST
T ss_pred ECCCCeE------------EEccCC-----------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccC
Confidence 6432111 001000 0014567889999888887775556779999987776433221
Q ss_pred -CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-----ccCEEEEEEcCCCCEEEEEeCCCcEEEEe
Q 001403 833 -PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWD 906 (1084)
Q Consensus 833 -~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-----~~~V~~l~~spd~~~l~s~s~dg~I~iwd 906 (1084)
.....|.++...+ ++.+.+ |+. +-|..||..+++........ ...|.++...++|.+.+. +.++-|..||
T Consensus 446 ~~~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWig-t~~~Gl~~~~ 521 (781)
T 3v9f_A 446 KNELLDVRVFYEDK-NKKIWI-GTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIG-TFGGGVGIYT 521 (781)
T ss_dssp TTCCCCEEEEEECT-TSEEEE-EET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEE-ESSSCEEEEC
T ss_pred CCCCCeEEEEEECC-CCCEEE-EEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEE-EcCCCEEEEe
Confidence 1346789999888 665544 555 55999998876543322211 467999999998887664 4433488899
Q ss_pred CCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCC---CCCEEEEEEccCCC
Q 001403 907 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS---SVPISQATFSCDCR 983 (1084)
Q Consensus 907 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h---~~~v~~l~fs~dg~ 983 (1084)
..+++... +....+. ....|.++...++|.+.+++.+|-+..||..+++... +...+ ...|.++...++|.
T Consensus 522 ~~~~~~~~---~~~~~~l--~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~ 595 (781)
T 3v9f_A 522 PDMQLVRK---FNQYEGF--CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGN 595 (781)
T ss_dssp TTCCEEEE---ECTTTTC--SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSC
T ss_pred CCCCeEEE---ccCCCCC--CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCC
Confidence 87754322 2211111 1246889999999998777665544889987765332 22111 34688899999997
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 984 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+.++ +.+| |..++..++... .+....-++. ......++..++ | ..|..|+.+| +..+++..
T Consensus 596 lW~~-t~~G-l~~~~~~~~~~~-~~~~~dGl~~----~~f~~~~~~~~~-~-G~l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 596 IWAS-TNTG-ISCYITSKKCFY-TYDHSNNIPQ----GSFISGCVTKDH-N-GLIYFGSING-LCFFNPDI 656 (781)
T ss_dssp EEEE-CSSC-EEEEETTTTEEE-EECGGGTCCS----SCEEEEEEEECT-T-SCEEEEETTE-EEEECSCC
T ss_pred EEEE-cCCc-eEEEECCCCceE-EecccCCccc----cccccCceEECC-C-CEEEEECCCc-eEEEChhh
Confidence 6664 4555 777888876553 3332222222 223334556665 3 4566777787 55666643
No 188
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.57 E-value=2.6e-12 Score=139.67 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=143.3
Q ss_pred CccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceee
Q 001403 796 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~ 871 (1084)
....++|+|||+++.+++ ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++..
T Consensus 138 ~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~ 213 (386)
T 3sjl_D 138 YPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPE 213 (386)
T ss_dssp CGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCE
T ss_pred CCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEE
Confidence 455789999999888875 4789999999999999886432 1 233433 566777888899999999876 5543
Q ss_pred eeeccc----ccCEE-EEEEc-CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC------CCCccCCCCceEEEEccC
Q 001403 872 SKLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 872 ~~l~~h----~~~V~-~l~~s-pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~~s~d 939 (1084)
.....+ ..++. ...|. ++|+++. .+.+|+|.+.|+.++.......+... .+-. .+....++++++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~--p~g~q~~a~~~~ 290 (386)
T 3sjl_D 214 ITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWR--PGGWQQVAYHRA 290 (386)
T ss_dssp EEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEE--ECSSSCEEEETT
T ss_pred EeecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceecccccccccccc--CCCcceeeECCC
Confidence 221111 12222 24564 6775554 66689999999987653222222110 0100 023456888999
Q ss_pred CCEEEEEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeE
Q 001403 940 QTRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 940 g~~la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~ 1006 (1084)
++.+.+.. .+.|.+.|+.+++.+..+..++ .+.+++|++|++ +|+++. .++.|.++|..+++.+.
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~--~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~ 368 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELR 368 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCC--CcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE
Confidence 99988852 2579999999999999877653 788999999997 666654 58999999999999998
Q ss_pred Eec
Q 001403 1007 RIL 1009 (1084)
Q Consensus 1007 ~~~ 1009 (1084)
++.
T Consensus 369 ~i~ 371 (386)
T 3sjl_D 369 SVN 371 (386)
T ss_dssp EEC
T ss_pred Eec
Confidence 887
No 189
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=99.57 E-value=4.3e-13 Score=147.96 Aligned_cols=263 Identities=11% Similarity=0.056 Sum_probs=184.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
..|.+++|+|++..++..+.++.++.|. ++.. ..+..+...+.+++|+++|+ +++++..++.|.+||.++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~ 77 (333)
T 2dg1_A 6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW---LEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE 77 (333)
T ss_dssp CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---EEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred cccceeeecCCccceeEEeecccCcccc---ccee---EEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence 4577889999998888888888899992 3222 24556777789999999998 77788889999999998887
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCCceEeec--CCCCeEEEEEEcCCCCEEEEEeeC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS 542 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d~~~l~~~~~~ 542 (1084)
.......+...+.+++++ +++.++++...+ +.|.+||.++......+. .....+..++++|+|+.+++....
T Consensus 78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~ 155 (333)
T 2dg1_A 78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG 155 (333)
T ss_dssp EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence 665444567789999995 466777777666 689999988766543332 234578899999999887765421
Q ss_pred --CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCC-CeEEEEE------cCCC
Q 001403 543 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG 612 (1084)
Q Consensus 543 --~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~ 612 (1084)
.+..+.|+.+|..+++....... . ..+..++|+|+++.++++ +.++.|++||..+ +..+..+ ....
T Consensus 156 ~~~~~~~~l~~~~~~~~~~~~~~~~-~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~ 231 (333)
T 2dg1_A 156 YSTNPLGGVYYVSPDFRTVTPIIQN-I---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG 231 (333)
T ss_dssp BTTBCCEEEEEECTTSCCEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred cccCCCceEEEEeCCCCEEEEeecC-C---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence 11245688888776655433322 2 357889999999876554 5678999999963 3322211 1111
Q ss_pred CCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccc------ceeEEEEcCC
Q 001403 613 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVNPI 667 (1084)
Q Consensus 613 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~------~i~~~~~~p~ 667 (1084)
. ..+..++++++|+++++...++.|.+|+.. ++.+..+..+.. .+.+++++|+
T Consensus 232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEECCC
Confidence 1 246789999999988888788999999984 555555443322 4566666643
No 190
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.57 E-value=1.4e-11 Score=133.29 Aligned_cols=285 Identities=10% Similarity=0.044 Sum_probs=194.5
Q ss_pred cccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC
Q 001403 330 LIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 409 (1084)
Q Consensus 330 l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d 409 (1084)
+..+...+.+++++|+|++.++...+ +.|.+||.. +... ......+...+.+++++++|.++++...+
T Consensus 10 ~~~~~~~~~~i~~d~~g~l~v~~~~~---------~~v~~~d~~-~~~~--~~~~~~~~~~~~~i~~~~~g~l~v~~~~~ 77 (299)
T 2z2n_A 10 LTNQDTGPYGITVSDKGKVWITQHKA---------NMISCINLD-GKIT--EYPLPTPDAKVMCLTISSDGEVWFTENAA 77 (299)
T ss_dssp CCSSSCCEEEEEECTTSCEEEEETTT---------TEEEEECTT-CCEE--EEECSSTTCCEEEEEECTTSCEEEEETTT
T ss_pred CCCcCCCccceEECCCCCEEEEecCC---------CcEEEEcCC-CCeE--EecCCcccCceeeEEECCCCCEEEeCCCC
Confidence 44555689999999999988875433 789999987 3322 11122345789999999999988887778
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeeccc
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~ 488 (1084)
+.|..||.. ++ .... .+......+.++++.++|. ++++...++.|.+||. +++... ....+...+..+++.
T Consensus 78 ~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~-- 149 (299)
T 2z2n_A 78 NKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLG-- 149 (299)
T ss_dssp TEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC--
T ss_pred CeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEc--
Confidence 889999986 32 2211 2223455789999999998 6777666889999998 665442 223345668888884
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEe-ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
+++.++++...++.|..||. +++.... .......+..++++++|+..++... .+.|.+||. +++... +....
T Consensus 150 ~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~~~-~~~~~ 222 (299)
T 2z2n_A 150 SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEITE-FKIPT 222 (299)
T ss_dssp TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE-EECSS
T ss_pred CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcEEE-EECCC
Confidence 46677777777789999998 4443322 3333456889999999996665432 456999998 666443 22111
Q ss_pred cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 568 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
....+..++++++++.+++...++.|.+||. +++. ..+........+.++++ +++.++++.. .+.+..++..++
T Consensus 223 -~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 223 -PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKD 296 (299)
T ss_dssp -TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC--
T ss_pred -CCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCcc
Confidence 1256889999999986666657899999998 4543 33332233345788999 8887666654 567777776654
No 191
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.56 E-value=2e-11 Score=135.36 Aligned_cols=204 Identities=10% Similarity=0.010 Sum_probs=141.5
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEE-EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
...++++|||++|++++ ++.|.++| .+++.+.+ +.... ++.+.|++.+.+++.+.||.+.++|. +++.+.
T Consensus 127 p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~ 200 (373)
T 2mad_H 127 SWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAG 200 (373)
T ss_pred ccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEE
Confidence 34678999999988876 36799999 99998877 65322 24555645567777888999999999 887663
Q ss_pred eec-----ccccC-EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----CccCCCCceEEEEccCCCE
Q 001403 873 KLE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHKDQTR 942 (1084)
Q Consensus 873 ~l~-----~h~~~-V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~dg~~ 942 (1084)
... ....+ .....+.+++..++..+..+.|.+.|+.++.......+..... ..-.......++++||++.
T Consensus 201 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~ 280 (373)
T 2mad_H 201 AGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDG 280 (373)
T ss_pred EEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCE
Confidence 321 11122 2335677777666555678899999997654222111211110 0000123445889999998
Q ss_pred EEEEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEe
Q 001403 943 FLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 943 la~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.++. .+.|.++|+.+++.+..+..+ ....+++|+|||+ +++++. .++.|.+||+.+++.+.++
T Consensus 281 lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 281 IYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 88742 257999999999998887543 3688999999999 777776 4899999999999999774
No 192
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.56 E-value=2.3e-12 Score=141.19 Aligned_cols=201 Identities=9% Similarity=0.068 Sum_probs=142.5
Q ss_pred ccEEEecCCCCEEEEE-eCCeEEEEEcCCceeEEEEcCCC-----CCeEEEEEcCCCCcEEEEEe-CCCeEEEEEcCCce
Q 001403 797 VPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSE 869 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~-sdg~i~vwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~la~g~-~dg~i~iwd~~~~~ 869 (1084)
...++++++++.+++. .++.|.+||..+++....+.... .....+++ . +++++++.. .++.|.++|..+++
T Consensus 86 p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~lyv~~~~~~~~v~viD~~t~~ 163 (328)
T 3dsm_A 86 PRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVYVNCWSYQNRILKIDTETDK 163 (328)
T ss_dssp EEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEEEEECTTCCEEEEEETTTTE
T ss_pred CcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEEEEcCCCCCEEEEEECCCCe
Confidence 3455666666444443 26788888888888776665332 14556777 3 566666554 48899999999999
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
.+..+... .....++++|+|++++++..+ +.|.++|..+++... .+....+ .....++|+||
T Consensus 164 ~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~~~g-----~~p~~la~~~d 235 (328)
T 3dsm_A 164 VVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKFKLG-----DWPSEVQLNGT 235 (328)
T ss_dssp EEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEECCTT-----CCCEEEEECTT
T ss_pred EEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEecCCC-----CCceeEEEecC
Confidence 88777643 345789999999988877654 789999999876433 2222212 14789999999
Q ss_pred CCEEEEEeCCeEEEEEcCCcceeeEe-ecCCCCCEEEEEEcc-CCCEEEEE----eCCCcEEEEEcCCCceeEEec
Q 001403 940 QTRFLLVHETHLAIYEAEELTCLKQW-FPISSVPISQATFSC-DCRMVFTS----FVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~~~~~~~-~~~h~~~v~~l~fs~-dg~~l~t~----~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+++|.++.. .|.+||..+++..... ...+......++++| ++..+++. ..++.|.+||.. |+.+.++.
T Consensus 236 ~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 236 RDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp SCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred CCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 999988654 9999999988764321 221246788999999 55555555 578999999998 98887776
No 193
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=9.9e-13 Score=142.23 Aligned_cols=248 Identities=11% Similarity=0.041 Sum_probs=174.3
Q ss_pred ceeeecccCCCCceEEEEcCCCc-eeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEE
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 403 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~-~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l 403 (1084)
..+..+..+.....+++|+|+|+ +++++..+ +.|..||..+. . . .+..+...+.+++|+|+|+++
T Consensus 18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~---------~~i~~~~~~~~-~--~--~~~~~~~~~~~l~~~~dg~l~ 83 (296)
T 3e5z_A 18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQ---------NRTWAWSDDGQ-L--S--PEMHPSHHQNGHCLNKQGHLI 83 (296)
T ss_dssp CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGG---------TEEEEEETTSC-E--E--EEESSCSSEEEEEECTTCCEE
T ss_pred CcEEEEecCCccccCCeEeCCCCEEEEEeCCC---------CEEEEEECCCC-e--E--EEECCCCCcceeeECCCCcEE
Confidence 34455666666889999999998 66666555 88999999876 2 1 134467789999999999988
Q ss_pred EEEeCCCEEEEEEccCCccccceeeeecc-cccEeEEEeecCCCcEEEEE----Ee-------------CCCcEEEEECC
Q 001403 404 GVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKTIKVWDAV 465 (1084)
Q Consensus 404 as~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s----~~-------------~d~~i~vwd~~ 465 (1084)
++...++.|.+||..+++.........+. ...+..++++|+|+ ++++ |. ..+.|..++..
T Consensus 84 v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (296)
T 3e5z_A 84 ACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD 161 (296)
T ss_dssp EEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT
T ss_pred EEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEECCC
Confidence 88777789999999887643211111111 23467899999998 6776 32 13456666654
Q ss_pred CCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-CCCc---eEeecCCCCeEEEEEEcCCCCEEEEEee
Q 001403 466 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGT 541 (1084)
Q Consensus 466 ~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~d~~~l~~~~~ 541 (1084)
++ +..+..+......++|+ ++++.+++.+.++.|.+|+++ .+.. ...+......+..++++++|++.++.
T Consensus 162 -g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-- 235 (296)
T 3e5z_A 162 -GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-- 235 (296)
T ss_dssp -SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--
T ss_pred -CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--
Confidence 44 44455566778889995 466777778888999999997 3332 22233334456789999999977665
Q ss_pred CCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE-cCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 542 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 542 ~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
.+.|.+||.. ++.+..+..+. . +.+++| +|+++.|++++.+ .+..++..+..+
T Consensus 236 ----~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 ----GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp ----TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred ----CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 2349999986 77777777666 5 888999 5899999998875 455566666543
No 194
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=99.55 E-value=1.6e-12 Score=140.54 Aligned_cols=238 Identities=11% Similarity=0.061 Sum_probs=168.3
Q ss_pred ecCCCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++++++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 334556788999999998 7777888899999999986 33 4556777899999999998 67776667899999
Q ss_pred ECCCCceeeEeccC----CCcEEEEeecccCCCcEEEEEec-----------------CCeEEEEECCCCCceEeecCCC
Q 001403 463 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 463 d~~~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
|..+|+........ ...+..+++ +++|.++++.+. .+.|..++.+ .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~--d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCL--APDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEE--CTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEE--CCCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 99888765433221 123456777 457778887321 2345545443 3344444555
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC-CceE---eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-~~~~---~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
.....++|+|||+.+++.. .++.|++|++. +++. ...+..+ ...+..++++++|+.+++. ++.|.+|
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~p~~i~~d~~G~l~v~~--~~~v~~~ 242 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHFTVE---PGKTDGLRVDAGGLIWASA--GDGVHVL 242 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEECCS---SSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEeeCC---CCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence 5678999999999994443 25679999986 5554 3333222 2556789999999866665 8899999
Q ss_pred ECCCCeEEEEEcCCCCCCCcceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001403 598 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 598 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
|.. ++.+..+..+.. +.+++| +|+++.|++++.+ .+.-++..+.
T Consensus 243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~ 287 (296)
T 3e5z_A 243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVST-EFWSIETNVR 287 (296)
T ss_dssp CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETT-EEEEEECSCC
T ss_pred CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCC-eEEEEEcccc
Confidence 986 777777765543 688999 5899999998876 4555566554
No 195
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.53 E-value=2.2e-12 Score=136.73 Aligned_cols=247 Identities=9% Similarity=-0.000 Sum_probs=177.9
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCE
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRV 881 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V 881 (1084)
.++.|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++ +.++.|+.||. +|+.+.++..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 456777776 7999999999999999998766 5789999999 888888 45788999999 899999888653 478
Q ss_pred EEEEEcCCCCEEEEEeC-CCcEEEEeCCCCceeeeeeeecC-CCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCC
Q 001403 882 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE 958 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~ 958 (1084)
.++.+.+||+++++.+. ++.|..+|. .|+......+... .++.. ....+++.++|.++++. .++.|..||..
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~---~~~~v~~~~~G~~lv~~~~~~~v~~~d~~- 154 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHA---QFRQINKNKKGNYLVPLFATSEVREIAPN- 154 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGG---SCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccc---cccCceECCCCCEEEEecCCCEEEEECCC-
Confidence 89999999999999887 777888886 4443332222111 11111 34566889999999985 67899999998
Q ss_pred cceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEE
Q 001403 959 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQF 1038 (1084)
Q Consensus 959 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l 1038 (1084)
|+.+.++.. ...+.++.+.++|..+++++.++.|..+|..+|+.+.++..... +.. .-.++..++..+ +|+.+
T Consensus 155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~-~~~---~l~~~~~~~~~~-~G~i~ 227 (276)
T 3no2_A 155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDI-EGV---QLFFVAQLFPLQ-NGGLY 227 (276)
T ss_dssp SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGS-BSC---CCSEEEEEEECT-TSCEE
T ss_pred CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCC-CCc---cccccccceEcC-CCCEE
Confidence 998887554 24566788899999999998888999999999999988863211 110 113455667777 57777
Q ss_pred EEEeCC--------CcEEEEcCC-CCCCCcccCCCCCc
Q 001403 1039 AVGLTN--------GEVYVIEPN-EPGDTWAVLPPDEI 1067 (1084)
Q Consensus 1039 ~~~~~d--------g~v~vw~~~-~~~~~~~~~~~~~~ 1067 (1084)
++.+.. +..+++++. +.+..|......+.
T Consensus 228 v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~ 265 (276)
T 3no2_A 228 ICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKF 265 (276)
T ss_dssp EEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTS
T ss_pred EEeccCccccccccCCceEEEECCCCCEEEEecCcccc
Confidence 766321 233556653 33445665444444
No 196
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=99.53 E-value=2e-12 Score=141.65 Aligned_cols=273 Identities=11% Similarity=0.016 Sum_probs=187.4
Q ss_pred ceEEEEEcCCccccceeee-ec--CCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLFKTAL-VR--DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~-~~--~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
++|.+||.++......... .. ........+++. +++.+++...++.|.+||..+++.+. .+. .......+++
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~---~i~-~~~~p~~i~~ 91 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG---RIT-GFTSPRYIHF 91 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE---EEE-CCSSEEEEEE
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE---EcC-CCCCCcEEEE
Confidence 8999999988654321100 01 122456778874 45555666678899999999987665 332 3456889999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCC-----CcEEEEeecccCCCcEEEEEe-cCCeEEEEECCCCCceE
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~-----~~v~~~~~~~~~~~~~l~s~s-~dg~i~iwd~~~~~~~~ 515 (1084)
+++++ +.++...++.|.+||..+++...++.... .....+++ . ++.++++.. .++.|.++|..+.+...
T Consensus 92 ~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~~~v~viD~~t~~~~~ 166 (328)
T 3dsm_A 92 LSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQNRILKIDTETDKVVD 166 (328)
T ss_dssp EETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTCCEEEEEETTTTEEEE
T ss_pred eCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCCCEEEEEECCCCeEEE
Confidence 99985 56665578999999999999887775433 13445666 2 334444443 48999999999887666
Q ss_pred eecCCCCeEEEEEEcCCCCEEEEEeeCCCC------CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE
Q 001403 516 DYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~------~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
.+... .....++++|+|++++++..+... .+.|.++|..+++....+.... ......++|+|+++.++++.
T Consensus 167 ~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~ 243 (328)
T 3dsm_A 167 ELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWIN 243 (328)
T ss_dssp EEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEES
T ss_pred EEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEc
Confidence 65543 244678999999977766432100 2679999999998877765432 13688999999999998876
Q ss_pred CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEec-CCCEEEEE----ECCCeEEEEEcCCCCeeeecc
Q 001403 590 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 590 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~----~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
. .|.+||..+++................++++| ++.++++. ..++.|.+||.. ++.+..+.
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 5 89999999887642111111123467899999 55555555 567899999998 77776654
No 197
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.52 E-value=6.5e-13 Score=163.37 Aligned_cols=285 Identities=8% Similarity=0.020 Sum_probs=181.2
Q ss_pred EcCCCceeeeecccccCccccccceEEEEEcCC-----ccccce---eeeecCCCCCeEEEEEcCCCCEEEEEeCC----
Q 001403 342 FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGA-----CSMLFK---TALVRDPGVSVNRVVWSPDGSLLGVAYSK---- 409 (1084)
Q Consensus 342 ~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~-----~~~~~~---~~~~~~h~~~V~~v~fspdg~~las~~~d---- 409 (1084)
.+|||++++....+ .|. ..-.+|.... +..... ..+..+|...+..++|||||++||.+..+
T Consensus 114 p~pdG~~~~~~~~~--~~~----~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e 187 (741)
T 1yr2_A 114 PQRRGASVFYSWNS--GLM----NQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSD 187 (741)
T ss_dssp CEEETTEEEEEEEC--SSC----SSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCS
T ss_pred CEEECCEEEEEEEc--CCC----eEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCc
Confidence 34999999986544 121 1234554432 221110 01123444578899999999999988654
Q ss_pred -CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--------------cEEEEECCCCce----e
Q 001403 410 -HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------------TIKVWDAVTGSR----T 470 (1084)
Q Consensus 410 -g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--------------~i~vwd~~~g~~----~ 470 (1084)
..|++||+.+|+.+. ...+...+..++|+|| + .|+.++.++ .|++|++.++.. +
T Consensus 188 ~~~i~v~dl~tg~~~~----~~~~~~~~~~~~wspD-~--~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv 260 (741)
T 1yr2_A 188 WRTVKFVGVADGKPLA----DELKWVKFSGLAWLGN-D--ALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPV 260 (741)
T ss_dssp EEEEEEEETTTCCEEE----EEEEEEESCCCEESTT-S--EEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEE
T ss_pred eEEEEEEECCCCCCCC----ccCCCceeccEEEECC-C--EEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEE
Confidence 469999999987543 1122223468899999 8 455555544 389999987762 2
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCCC--CceEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.....+...+..+.| ++||++|+..+.++ .|.+||++++ .....+..+....... ++|+|+.|+..+..+
T Consensus 261 ~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~ 337 (741)
T 1yr2_A 261 FATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDG 337 (741)
T ss_dssp ECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTT
T ss_pred eccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCC
Confidence 222334445778888 55778888777554 7999999876 3133333333333444 349999999887654
Q ss_pred CCCeeEEEecCCCc--eEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC-CCeEEEEEcCCCCCCCcceE
Q 001403 544 EGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI 620 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v 620 (1084)
..+..|.+||+.++ +....+..+. ..+..+.++ ++..+++...|+..++|.+. ++.....+..+. ...+..+
T Consensus 338 ~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~v~~~ 412 (741)
T 1yr2_A 338 APLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPG-IGSASGL 412 (741)
T ss_dssp CTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSS-SCEEEEE
T ss_pred CCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCC-CeEEEEe
Confidence 44678999999874 3444444433 456677777 55667778888887777554 456666665432 2346788
Q ss_pred EEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001403 621 CFNKNGTLLAVIAN----ENRIKILETPESN 647 (1084)
Q Consensus 621 ~~s~~~~~l~~~~~----dg~i~iwd~~~~~ 647 (1084)
+++|+++.++.... .++|++||+.+++
T Consensus 413 ~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 413 SGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp ECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred ecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 89999886664432 3789999998775
No 198
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=99.52 E-value=3.8e-13 Score=164.19 Aligned_cols=255 Identities=8% Similarity=-0.081 Sum_probs=166.8
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||..... +|.. ..+|++||+.++...... .+.+. ....++|||||+.|+.++.+..
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~--~G~~--~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~~l~~~~~d~~ 190 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKP--NAAD--EAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSKGFYYEWLPTD 190 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEE--TTCS--CCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSSEEEEEECCCC
T ss_pred CCCEEEEEEEECCCCCEEEEEECC--CCCc--eEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCCEEEEEEecCC
Confidence 566678999999999999975443 1211 278999999987654111 12111 1267999999999999988766
Q ss_pred -------------EEEEEccCCccc-cceeeeecccccEeEEEeecCCCcEEEEEEeCCC----cEEEEECCCCceeeEe
Q 001403 412 -------------VQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIKVWDAVTGSRTYSF 473 (1084)
Q Consensus 412 -------------v~iwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~----~i~vwd~~~g~~~~~~ 473 (1084)
|++|++.+++.- ..+.....|...+..+.|||||+. |+.++.++ .|.+||..++. ...+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~~~~~~~~-~~~l 267 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYWKRPGEKD-FRLL 267 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEEECTTCSS-CEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEEEcCCCCc-eEEe
Confidence 999999987632 122233345567899999999995 44444344 67777765554 4455
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEe---cCCeEEEEECCCCCc---eEeecCC-CCeEEEEEEcCCCCEEEEEeeCCCCC
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGE 546 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~d~~~l~~~~~~~~~~ 546 (1084)
..+...+....+ + +|.+++... .++.|.+||+++... ...+... ...+..++++ ++.++++... ++.
T Consensus 268 ~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~--dg~ 341 (695)
T 2bkl_A 268 VKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLK--DAT 341 (695)
T ss_dssp EECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEE--TTE
T ss_pred ecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEE--CCE
Confidence 556555555555 2 344444444 257899999987653 2333333 4567888888 5666666554 334
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQLL 605 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~~ 605 (1084)
..|.++++. ++....+..+. ...+..++++|+++.++... ..++|++||+.+++..
T Consensus 342 ~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~ 401 (695)
T 2bkl_A 342 SEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSE 401 (695)
T ss_dssp EEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred EEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEE
Confidence 456666654 55555555442 25677788999998777533 3478999999988743
No 199
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=99.52 E-value=5.6e-12 Score=133.62 Aligned_cols=248 Identities=12% Similarity=0.092 Sum_probs=180.9
Q ss_pred CCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCC-CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccc
Q 001403 345 VQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 423 (1084)
Q Consensus 345 dg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~-~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~ 423 (1084)
.+++|++++.| +.|.+||.++++...+.. .+. ..+.+++++|+|++|+ +.++.|..||. +|+.+
T Consensus 4 ~~~~lv~~~~~---------~~v~~~d~~tG~~~w~~~---~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~ 68 (276)
T 3no2_A 4 PQHLLVGGSGW---------NKIAIINKDTKEIVWEYP---LEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGREL 68 (276)
T ss_dssp CCEEEEECTTC---------SEEEEEETTTTEEEEEEE---CCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEE
T ss_pred CCcEEEeeCCC---------CEEEEEECCCCeEEEEeC---CCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEE
Confidence 45788888777 999999998888776542 333 4789999999999998 45677999999 77655
Q ss_pred cceeeeecc-cccEeEEEeecCCCcEEEEEEeC-CCcEEEEECCCCceeeEecc------CCCcEEEEeecccCCCcEEE
Q 001403 424 RQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEG------HGAPVYSLCPHAKENIHFIF 495 (1084)
Q Consensus 424 ~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s~~~-d~~i~vwd~~~g~~~~~~~~------h~~~v~~~~~~~~~~~~~l~ 495 (1084)
. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|. +|+.+.++.. +......+++ .++|++++
T Consensus 69 W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~~lv 140 (276)
T 3no2_A 69 W---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKGNYLV 140 (276)
T ss_dssp E---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTSCEEE
T ss_pred E---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCCCEEE
Confidence 4 44443 34688999999999 7777776 778888884 7887776642 1122333344 55788999
Q ss_pred EEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccc---cCc
Q 001403 496 SISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ---HNS 572 (1084)
Q Consensus 496 s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~---~~~ 572 (1084)
+...++.|..||.+ ++.+..+.... ...++.+.++|+.++++.. .+.|..+|..+|+.+..+...... -..
T Consensus 141 ~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~ 214 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQLFF 214 (276)
T ss_dssp EETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred EecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence 99999999999988 88877776643 4456778899999988753 457999999999999888754311 123
Q ss_pred eEEEEEcCCCCEEEEEECC--------CcEEEEEC-CCCeEEEEEcCCCCCCCcceEE
Q 001403 573 VSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
+..+...++|+.+++.+.. +..+++.+ .+|+.+..+........+..++
T Consensus 215 ~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~ 272 (276)
T 3no2_A 215 VAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC 272 (276)
T ss_dssp EEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred cccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence 7888889999988887421 23345555 4788888887666655566554
No 200
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=99.51 E-value=1e-11 Score=134.97 Aligned_cols=313 Identities=9% Similarity=0.014 Sum_probs=201.7
Q ss_pred cccCCCcEEEEEec-----CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeC------CCCCeeEEEecC
Q 001403 486 HAKENIHFIFSISV-----DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNE 554 (1084)
Q Consensus 486 ~~~~~~~~l~s~s~-----dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~------~~~~~~i~~wd~ 554 (1084)
.+.++++.++.... ++.|.+.|..+.+....+.....+ . ++++|||++++++... ++.++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34567777777765 679999999998887777655555 3 9999999999887521 112567999999
Q ss_pred CCceEeeeeeccc----cccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCE
Q 001403 555 SEGAIKRTYQGLQ----LQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 628 (1084)
Q Consensus 555 ~~~~~~~~~~~~~----~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~ 628 (1084)
.+++.+..+.... ........++|+|||++++++.. ++.|.++|+.+++.+..+...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875321 00124567899999999998864 68999999999999999864321 2334335567
Q ss_pred EEEEECCCeEEEEEcCC-CCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccc
Q 001403 629 LAVIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKP 707 (1084)
Q Consensus 629 l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~ 707 (1084)
+++.+.||.+.+.++.+ ++...... .+++.
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~-------------------------------------------------~~~~~ 222 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHT-------------------------------------------------EVFHP 222 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEEC-------------------------------------------------CCCSC
T ss_pred eEEECCCCCEEEEECCCCCeEEEeec-------------------------------------------------ceecc
Confidence 77888899988888875 33211000 00000
Q ss_pred eeecCccceeeccCCccccceE-EEEEEe-cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc
Q 001403 708 LFARPSECQSLLLPSKVKANKI-SRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV 785 (1084)
Q Consensus 708 ~~~~~~~~~~~~~~~~~~~~~i-~~l~~s-~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 785 (1084)
. ...+ ....|. ++|+.++ .+.+|.+.+.|...+.... +.-|++-....+.
T Consensus 223 ~-----------------~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v---------~~~~~~~~~~~~~- 274 (386)
T 3sjl_D 223 E-----------------DEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKF---------LPAVEALTEAERA- 274 (386)
T ss_dssp T-----------------TSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEE---------CCCEESSCHHHHH-
T ss_pred c-----------------cccccccceeEcCCCcEEE-EeCCCEEEEEECCCCccee---------ecceecccccccc-
Confidence 0 0000 012443 5665444 4446788888765432110 0011100000000
Q ss_pred ccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEE
Q 001403 786 NDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAI 853 (1084)
Q Consensus 786 ~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~ 853 (1084)
.+ -.......++++++++.+.... .+.|.++|+.+++.+.++... ..+..+++++ |++ +|++
T Consensus 275 ---~g-~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~-D~~~~ly~ 348 (386)
T 3sjl_D 275 ---DG-WRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQ-DEKPLLYA 348 (386)
T ss_dssp ---TT-EEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECS-SSSCEEEE
T ss_pred ---cc-ccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECC-CCCeEEEE
Confidence 00 0123445678899999888764 146999999999999888733 3678999999 665 6666
Q ss_pred E-eCCCeEEEEEcCCceeeeeecccccCEEEEEEcCC
Q 001403 854 G-MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 889 (1084)
Q Consensus 854 g-~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd 889 (1084)
. ..++.|.++|..+++.+.++..- +.-..|.+++|
T Consensus 349 tn~~~~~VsViD~~t~k~~~~i~~~-~~p~~l~~s~d 384 (386)
T 3sjl_D 349 LSTGDKTLYIHDAESGEELRSVNQL-GHGPQVITTAD 384 (386)
T ss_dssp EETTTTEEEEEETTTCCEEEEECCC-CSSCCEEEECC
T ss_pred EcCCCCeEEEEECCCCcEEEEecCC-CCCceeEECCc
Confidence 5 45899999999999999887632 22344666665
No 201
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=99.51 E-value=7.6e-11 Score=127.49 Aligned_cols=239 Identities=11% Similarity=0.024 Sum_probs=169.8
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 466 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~ 466 (1084)
+...+.+++++++|+++++...++.|.+||.. ++. ... .+..+...+.+++++++|. ++++...++.|..||..
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~-~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~- 86 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-GKI-TEY-PLPTPDAKVMCLTISSDGE--VWFTENAANKIGRITKK- 86 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCE-EEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTT-
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCe-EEe-cCCcccCceeeEEECCCCC--EEEeCCCCCeEEEECCC-
Confidence 45689999999999988877768899999988 542 211 2223456799999999998 66766668889999976
Q ss_pred Cce-eeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCce-EeecCCCCeEEEEEEcCCCCEEEEEeeCCC
Q 001403 467 GSR-TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGTSKE 544 (1084)
Q Consensus 467 g~~-~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~ 544 (1084)
++. ...+......+..+++. +++.++++...++.|..||. ++... .........+..+++.++|+..++...
T Consensus 87 g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~--- 160 (299)
T 2z2n_A 87 GIIKEYTLPNPDSAPYGITEG--PNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQ--- 160 (299)
T ss_dssp SCEEEEECSSTTCCEEEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETT---
T ss_pred CcEEEEeCCCcCCCceeeEEC--CCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCC---
Confidence 433 22222345578888884 46677777777889999988 33332 222334457889999999987776532
Q ss_pred CCeeEEEecCCCceEeee-eeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 545 GESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 545 ~~~~i~~wd~~~~~~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
.+.|..||. +++.... .... ...+..+++++++...++...++.|.+||. +++... +........+..++++
T Consensus 161 -~~~i~~~~~-~g~~~~~~~~~~---~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~ 233 (299)
T 2z2n_A 161 -NNAIGRITE-SGDITEFKIPTP---ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE-FKIPTPNARPHAITAG 233 (299)
T ss_dssp -TTEEEEECT-TCCEEEEECSST---TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred -CCEEEEEcC-CCcEEEeeCCCC---CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE-EECCCCCCCceeEEEC
Confidence 456999998 6665442 2222 256889999999987776667889999999 666443 3333233457899999
Q ss_pred cCCCEEEEEECCCeEEEEEcC
Q 001403 624 KNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 624 ~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
++|+++++...++.|..|+..
T Consensus 234 ~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 234 AGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp STTCEEEEETTTTEEEEEETT
T ss_pred CCCCEEEeccCCceEEEECCC
Confidence 999876666577899999983
No 202
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=99.51 E-value=4.2e-11 Score=132.77 Aligned_cols=286 Identities=12% Similarity=0.007 Sum_probs=186.0
Q ss_pred EEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEe----------CCC
Q 001403 341 DFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----------SKH 410 (1084)
Q Consensus 341 ~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~----------~dg 410 (1084)
...||++++.+.... ..+. . .+|.+||..+.+.... +.....+ .++|||||++++++. .++
T Consensus 27 ~~~~~~~~~yv~~~~-~~~~-~--~~v~v~D~~t~~~~~~---i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 27 APGADGRRSYINLPA-HHSA-I--IQQWVLDAGSGSILGH---VNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred cCCCCCCEEEEeCCc-ccCC-c--cEEEEEECCCCeEEEE---ecCCCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 455888877774210 0000 0 1889999988765432 2212222 899999999999986 367
Q ss_pred EEEEEEccCCccccceeee-ecc---cccEeEEEeecCCCcEEEEEEeC--CCcEEEEECCCCceeeE-eccCCCcEEEE
Q 001403 411 IVQLYAYHGGSDARQQLEI-DAH---VGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYS-FEGHGAPVYSL 483 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l-~~h---~~~V~~l~~s~d~~~l~l~s~~~--d~~i~vwd~~~g~~~~~-~~~h~~~v~~~ 483 (1084)
.|.+||..+.+.+..+..- ..+ ...-..++|+|||+ +|+.++. ++.|.++| ++++.+.+ +... .. +
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~-~~---~ 170 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDDQLLSSP-TC---Y 170 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEeEEcCCC-ce---E
Confidence 8999999987665433111 000 12345789999999 5555543 57899999 99998877 6432 22 3
Q ss_pred eecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----CCCCe-EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 484 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 484 ~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.+.+.+. ..+++.+.||.+.++|. +++...... ....+ .....+.+++..++..+. .+.+.+.|..++
T Consensus 171 ~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~----~~~v~vid~~~~ 244 (373)
T 2mad_H 171 HIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY----SGKILQADISAA 244 (373)
T ss_pred EEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC----CceEEEEeccCC
Confidence 3333332 45677888999999999 665542221 11112 233566777666555443 446888898654
Q ss_pred e--Eeeeeeccc-------cccCceEEEEEcCCCCEEEEEEC----------CCcEEEEECCCCeEEEEEcCCCCCCCcc
Q 001403 558 A--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDAGGGLPENP 618 (1084)
Q Consensus 558 ~--~~~~~~~~~-------~~~~~v~~~~~s~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 618 (1084)
. .+..+.... ........+.++|+++.++++.. .+.|.++|..+++.+..+..... ..
T Consensus 245 ~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~---p~ 321 (373)
T 2mad_H 245 GATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHD---VD 321 (373)
T ss_pred cceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCC---cC
Confidence 3 222221100 00122445789999998888653 35799999999999999875443 68
Q ss_pred eEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeee
Q 001403 619 RICFNKNGT-LLAVIA-NENRIKILETPESNSVDA 651 (1084)
Q Consensus 619 ~v~~s~~~~-~l~~~~-~dg~i~iwd~~~~~~~~~ 651 (1084)
.++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus 322 ~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~ 356 (373)
T 2mad_H 322 AISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS 356 (373)
T ss_pred eEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence 999999999 677776 489999999999988766
No 203
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.50 E-value=2.7e-12 Score=136.62 Aligned_cols=239 Identities=11% Similarity=0.022 Sum_probs=165.7
Q ss_pred CccEEEecCCCCEEE-EEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 796 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||..+......
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678899999999776 423 68899999866543322223335678999999 787666555 88999999876543322
Q ss_pred ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEE
Q 001403 874 LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA 952 (1084)
Q Consensus 874 l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~ 952 (1084)
.......+.+++++++|+++++...++.|.+|+..+..... ....+ . ..+..++++++|+++++. .++.|.
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~----~~~~~-~---~~p~~i~~~~~g~l~v~~~~~~~i~ 174 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTG-L---NDPDGVAVDNSGNVYVTDTDNNRVV 174 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE----CCCCS-C---CSCCCEEECTTCCEEEEEGGGTEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe----ecccc-C---CCceeEEEeCCCCEEEEECCCCEEE
Confidence 22233578999999999988887788899999766533111 11111 1 146789999999977765 567999
Q ss_pred EEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 953 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 953 vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
+||..++..... ...+...+.+++++++|.++++...++.|.+|+..+..... .. . ...-.+..++++|
T Consensus 175 ~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~---~~~~~p~~i~~~~ 243 (270)
T 1rwi_B 175 KLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------F---TGLNTPLAVAVDS 243 (270)
T ss_dssp EECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------C---CSCSCEEEEEECT
T ss_pred EEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------c---CCCCCceeEEECC
Confidence 999886654432 22334678999999999877777778899999987654432 11 0 0112356788998
Q ss_pred CCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1033 LKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
||+.+++...++.|+++++.++.
T Consensus 244 -~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 244 -DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp -TCCEEEEEGGGTEEEEECCCGGG
T ss_pred -CCCEEEEECCCCEEEEEcCCCcc
Confidence 57888888899999999996654
No 204
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=99.49 E-value=6.3e-08 Score=119.70 Aligned_cols=557 Identities=12% Similarity=0.029 Sum_probs=317.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeee-------cccccEeEEEeecCCCcEEEEEEeCCCcEE
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-------AHVGNVNDLAFSAPCKQISVITCGDDKTIK 460 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~-------~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~ 460 (1084)
...|.++.-.++|. |-.|..+| +..||-.+ ++...... -....|.++...++|. .|-.|+.++-+.
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl~ 90 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYKEEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGLN 90 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECCCSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCEE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEcCCCCCccccccccccceEEEcCCCC--EEEEEeCCCCcc
Confidence 46899999998885 56677788 77777443 22111100 0123588998887776 244455564699
Q ss_pred EEECCCCceeeEe-c---c---CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-----CCCCeEEEEE
Q 001403 461 VWDAVTGSRTYSF-E---G---HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLGCTRMA 528 (1084)
Q Consensus 461 vwd~~~g~~~~~~-~---~---h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~ 528 (1084)
.||..+++...-. . . ....|.++......++ .|..++.++-+..+|..+........ .....|.++.
T Consensus 91 ~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~ 169 (781)
T 3v9f_A 91 AYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTAT 169 (781)
T ss_dssp EEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEEEE
T ss_pred eECCCCCeEEeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEEEE
Confidence 9998877643221 1 0 1235777766321044 45556645557778876543322211 1234678888
Q ss_pred EcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc----ccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeE
Q 001403 529 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 604 (1084)
Q Consensus 529 ~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~ 604 (1084)
..++|.+.+... .+-|..||..+++........ ......|.++...+++...+ |+.+ -+.+||..+++.
T Consensus 170 ~d~~g~lwigt~-----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~ 242 (781)
T 3v9f_A 170 EAEDGKLYIGHV-----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETF 242 (781)
T ss_dssp EEETTEEEEEET-----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEE
T ss_pred ECCCCCEEEEec-----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcE
Confidence 888887665432 223888998877654321111 11125688888888876554 4555 689999887765
Q ss_pred EEEEcCC-----CCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCce
Q 001403 605 LTTIDAG-----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 679 (1084)
Q Consensus 605 ~~~~~~~-----~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~ 679 (1084)
....... -....|.++...++|. +.+|+..+-|.+++..+..........-..+ .
T Consensus 243 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~-----~-------------- 302 (781)
T 3v9f_A 243 TNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFI-----R-------------- 302 (781)
T ss_dssp EC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEE-----C--------------
T ss_pred EEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccc-----c--------------
Confidence 4322111 1123477888877775 5556665668888876553211000000000 0
Q ss_pred eEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCc
Q 001403 680 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 759 (1084)
Q Consensus 680 ~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~ 759 (1084)
+ . ..+.......|.++...++|. |-.++.++-+..++.....
T Consensus 303 --------------------------~-----~------~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~ 344 (781)
T 3v9f_A 303 --------------------------E-----G------DNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT 344 (781)
T ss_dssp --------------------------B-----C------SSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS
T ss_pred --------------------------C-----C------CCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc
Confidence 0 0 000001345688888888887 5556655556666543221
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE---cCCCC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI---MPPSP 836 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~---~~~~~ 836 (1084)
...+...... .....-....|.+++..++|.+.+...++.+..|+..+++..... .....
T Consensus 345 ------------~~~~~~~~~~-----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~ 407 (781)
T 3v9f_A 345 ------------FHTWSYSPTQ-----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSN 407 (781)
T ss_dssp ------------CEEEC----C-----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCS
T ss_pred ------------ceeeccCccc-----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCc
Confidence 1111110000 000001345689999999888776665677889998765432211 12346
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec--ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 914 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~--~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~ 914 (1084)
.|.+++..+ ++.+.+ |+.++-|..++..+++...... .....|.++...++|.+.+ |+. +-|..+|..+++...
T Consensus 408 ~v~~i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~ 483 (781)
T 3v9f_A 408 SVLCSLKDS-EGNLWF-GTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIH 483 (781)
T ss_dssp BEEEEEECT-TSCEEE-EETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCE
T ss_pred ceEEEEECC-CCCEEE-EeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEe
Confidence 789999887 666555 7777779999988776433221 1346799999988877655 445 458999988765433
Q ss_pred eeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCC
Q 001403 915 CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 915 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
.. ...........|.++...++|.+.+.+.++.|..||..+++... +... ....|.++...++|.+.+. +.+
T Consensus 484 ~~---~~~~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~-~~~~~~l~~~~i~~i~~d~~g~lWi~-T~~ 558 (781)
T 3v9f_A 484 HY---DTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRK-FNQYEGFCSNTINQIYRSSKGQMWLA-TGE 558 (781)
T ss_dssp EE---CTTTSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEE-ECTTTTCSCSCEEEEEECTTSCEEEE-ETT
T ss_pred cc---cCcccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEE-ccCCCCCCCCeeEEEEECCCCCEEEE-ECC
Confidence 21 11111111246899999999998887765668889987665332 2211 1467899999999986664 457
Q ss_pred CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 992 GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 992 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
|.|..||..+++.. .+....-++ ...|. ++..++ +| .|-.++..| |..++..
T Consensus 559 Glv~~~d~~~~~~~-~~~~~~gl~----~~~i~--~i~~d~-~g-~lW~~t~~G-l~~~~~~ 610 (781)
T 3v9f_A 559 GLVCFPSARNFDYQ-VFQRKEGLP----NTHIR--AISEDK-NG-NIWASTNTG-ISCYITS 610 (781)
T ss_dssp EEEEESCTTTCCCE-EECGGGTCS----CCCCC--EEEECS-SS-CEEEECSSC-EEEEETT
T ss_pred CceEEECCCCCcEE-EccccCCCC----CceEE--EEEECC-CC-CEEEEcCCc-eEEEECC
Confidence 76588998887643 332222222 22343 566665 34 455555555 6666654
No 205
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=99.48 E-value=5e-12 Score=134.56 Aligned_cols=240 Identities=10% Similarity=-0.057 Sum_probs=166.6
Q ss_pred CeEEEEEcCCCCEEE-EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
...+++++++|++++ +...++.|.+||..++.... ....+...+.+++++++|+ ++++.. ++.|.+||..++.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~p~~i~~~~~g~--l~v~~~-~~~i~~~d~~~~~ 98 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTV---LPFNGLYQPQGLAVDGAGT--VYVTDF-NNRVVTLAAGSNN 98 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EE---CCCCSCCSCCCEEECTTCC--EEEEET-TTEEEEECTTCSC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccce---EeeCCcCCcceeEECCCCC--EEEEcC-CCEEEEEeCCCce
Confidence 778899999999777 44678889999987654211 1123335678999999998 566555 8899999976654
Q ss_pred eeeEec-cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 469 RTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 469 ~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
. ..+. .....+..+++.+ +|.++++...++.|.+|+..+.............+..++++++|+.+++... ++
T Consensus 99 ~-~~~~~~~~~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~----~~ 171 (270)
T 1rwi_B 99 Q-TVLPFDGLNYPEGLAVDT--QGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTD----NN 171 (270)
T ss_dssp C-EECCCCSCSSEEEEEECT--TCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGG----GT
T ss_pred E-eeeecCCcCCCcceEECC--CCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECC----CC
Confidence 3 3333 2335688888854 6677777778899999976554433322222335678999999986665432 45
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.|.+||..++.......... ..+..++++++|..+++...++.|.+|+..+..... ... .+...+..++++++|+
T Consensus 172 ~i~~~~~~~~~~~~~~~~~~---~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~~-~~~~~p~~i~~~~~g~ 246 (270)
T 1rwi_B 172 RVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LPF-TGLNTPLAVAVDSDRT 246 (270)
T ss_dssp EEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CCC-CSCSCEEEEEECTTCC
T ss_pred EEEEEecCCCceEeecccCC---CCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ecc-CCCCCceeEEECCCCC
Confidence 69999988766544332222 568899999999777777778899999987654433 221 2223578999999999
Q ss_pred EEEEEECCCeEEEEEcCCCC
Q 001403 628 LLAVIANENRIKILETPESN 647 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~ 647 (1084)
++++...++.|++++....+
T Consensus 247 l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 247 VYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp EEEEEGGGTEEEEECCCGGG
T ss_pred EEEEECCCCEEEEEcCCCcc
Confidence 88888889999999987653
No 206
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.48 E-value=1.7e-11 Score=135.96 Aligned_cols=207 Identities=14% Similarity=0.070 Sum_probs=144.1
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeee
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK 873 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~ 873 (1084)
...++++|||+++++++ ++.|.+.|+.+++.+.++..... ....|++.+.+++.+.||.+.+.+..+++....
T Consensus 179 P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~ 254 (426)
T 3c75_H 179 QWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVT 254 (426)
T ss_dssp GGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEE
T ss_pred cceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEE
Confidence 44678999999988875 37899999999999988874321 334442445666677788888888866654422
Q ss_pred ----ecccccCE-EEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCc----cCCCCceEEEEccCCCEEE
Q 001403 874 ----LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM----TLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 874 ----l~~h~~~V-~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~dg~~la 944 (1084)
+.....++ ..+.|++++..++..+..+.|.+.|+.................. ........++++||++.+.
T Consensus 255 ~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rly 334 (426)
T 3c75_H 255 NTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIY 334 (426)
T ss_dssp ECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEE
T ss_pred eeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEE
Confidence 21111221 23578999998888888899999999765432211111110000 0001233479999999887
Q ss_pred EEe-----------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEEcCCCceeEEec
Q 001403 945 LVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 945 ~~~-----------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+.. .+.|.+.|+.+++.+..+..+ ....+++|+|||+ +|+++. .++.|.|+|+.+++.+.++.
T Consensus 335 Va~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 335 LLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 742 357999999999999887653 3588999999999 888887 58999999999999998873
No 207
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.47 E-value=2.1e-10 Score=124.07 Aligned_cols=279 Identities=10% Similarity=0.007 Sum_probs=190.4
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
.....+.++++.++|+..++...+ +.|.+||.. +.... ..+..+...+.+++++++|+++++...++.
T Consensus 17 ~~~~~p~~i~~d~~g~l~v~~~~~---------~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~ 84 (300)
T 2qc5_A 17 IPDSGPYGITSSEDGKVWFTQHKA---------NKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGDIWFTENGANK 84 (300)
T ss_dssp STTCCEEEEEECTTSCEEEEETTT---------TEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSCEEEEETTTTE
T ss_pred CCCCCcceeeECCCCCEEEEcCCC---------CeEEEECCC-CceEE--EECCCCCCcceeEEECCCCCEEEEecCCCe
Confidence 344588999999999988875434 789999987 33221 112334468999999999998887777888
Q ss_pred EEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccCC
Q 001403 412 VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKEN 490 (1084)
Q Consensus 412 v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~~ 490 (1084)
|..||.. ++. .. ..+......+.++++.++|. ++++...++.|..+|.. ++... .+......+..+++. ++
T Consensus 85 v~~~d~~-g~~-~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d--~~ 156 (300)
T 2qc5_A 85 IGKLSKK-GGF-TE-YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG--SD 156 (300)
T ss_dssp EEEECTT-SCE-EE-EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEEC--TT
T ss_pred EEEECCC-CCe-EE-ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEEC--CC
Confidence 9999988 543 21 12223346789999999998 66766667899999987 65542 233345667888884 46
Q ss_pred CcEEEEEecCCeEEEEECCCCCceE-eecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeee-eecccc
Q 001403 491 IHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQL 568 (1084)
Q Consensus 491 ~~~l~s~s~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~-~~~~~~ 568 (1084)
+.+.++...++.|..++. .++... ........+..+++.++|+..++... .+.|.+||. +++.... ....
T Consensus 157 g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~~~~~~~-- 228 (300)
T 2qc5_A 157 NALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISEYDIPTP-- 228 (300)
T ss_dssp SSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEEEECSST--
T ss_pred CCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEEEECCCC--
Confidence 676666666788999988 333322 22233456889999999987665432 456999998 5554432 2222
Q ss_pred ccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 569 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 569 ~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
...+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|+++++.. . .|..++.
T Consensus 229 -~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 229 -NARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp -TCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred -CCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 256889999999986666666799999998 45443 332222234578999999998665544 4 6666664
No 208
>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=99.41 E-value=7.1e-11 Score=131.02 Aligned_cols=292 Identities=10% Similarity=0.012 Sum_probs=189.3
Q ss_pred CCCCEEEEEeeCCCCC-eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCcEEEEEC
Q 001403 531 ANGRRLFSCGTSKEGE-SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDM 599 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~-~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~ 599 (1084)
++++.+++........ +.|.++|..+++.+..+.... .+ .+.++||+++++++. .++.|.++|.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~---~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~ 156 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGF---LP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDP 156 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECS---SC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCC---CC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEEC
Confidence 6778777765421111 789999999999999988655 44 899999999998875 4678999999
Q ss_pred CCCeEEEEEcCCCC-----CCCcceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceee
Q 001403 600 NKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG 672 (1084)
Q Consensus 600 ~~~~~~~~~~~~~~-----~~~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~ 672 (1084)
.+++.+..+...+. ......++|+|||++++++.. ++.|.+.|+.+.+.+..+..... ....|.+...
T Consensus 157 ~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~- 231 (426)
T 3c75_H 157 VTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTV- 231 (426)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTE-
T ss_pred CCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcE-
Confidence 99999988864310 113468999999999999874 57899999999987776653211 1111111100
Q ss_pred eeccCceeEecCCCCCCCCccceecccCccc-----cccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecC
Q 001403 673 AGIANGSVSVNEDPKEDVKPEISVEAENKSE-----VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 747 (1084)
Q Consensus 673 ~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~-----~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~d 747 (1084)
.+.+ +++|++++....++.+. +++.. .......+.+++++..++.....
T Consensus 232 ------~v~~----~~dG~~~~V~~~~~~v~~~~~~~~~v~----------------~~p~~~~~~~~~dg~~~~~~s~~ 285 (426)
T 3c75_H 232 ------FYMN----CRDGSLARVDFADGETKVTNTEVFHTE----------------DELLINHPAFSLRSGRLVWPTYT 285 (426)
T ss_dssp ------EEEE----ETTSSEEEEECCTTCCEEEECCCCSCT----------------TSCBCSCCEECTTTCEEEEEBTT
T ss_pred ------EEEE----cCCCCEEEEECCCCcEEEEeeeeeccC----------------CCceeeEeeecCCCCEEEEEeCC
Confidence 1111 23344333333333222 11111 01111235678888888887778
Q ss_pred CceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe-----------CCe
Q 001403 748 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-----------GGV 816 (1084)
Q Consensus 748 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s-----------dg~ 816 (1084)
+.+.+.|........ +..|.+.......... .......++++||++++.++. .+.
T Consensus 286 g~V~ViD~~~~~~~v---------~~~~~~~~~~~i~~g~-----~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~ 351 (426)
T 3c75_H 286 GKIFQADLTAEGATF---------RAPIEALTEAERADDW-----RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF 351 (426)
T ss_dssp SEEEEEEECSSCEEE---------CCCEESSCTTTGGGTE-----EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE
T ss_pred CcEEEEeccCCceEE---------eeeeeecccccccccc-----ccCCceeeEEcCCCCEEEEEecccccccccCCCCE
Confidence 888888865432100 0112211111000000 112233478999998877764 247
Q ss_pred EEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeee
Q 001403 817 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 817 i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l 874 (1084)
|.++|+.+++.+.++... .....++|+| |++ ++++.. .++.|.++|+.+++.+.++
T Consensus 352 VsVID~~T~kvv~~I~vg-~~P~gia~sp-Dg~~~lyv~n~~s~~VsVID~~t~kvv~tI 409 (426)
T 3c75_H 352 VVVLNAETGERINKIELG-HEIDSINVSQ-DAEPLLYALSAGTQTLHIYDAATGEELRSV 409 (426)
T ss_dssp EEEEETTTCCEEEEEEEE-EEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEEECC-CCcCeEEEcc-CCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence 999999999999988632 3578999999 777 888877 5899999999999999886
No 209
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=99.41 E-value=8.9e-10 Score=119.03 Aligned_cols=276 Identities=9% Similarity=0.062 Sum_probs=187.5
Q ss_pred cceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCC
Q 001403 726 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 805 (1084)
Q Consensus 726 ~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d 805 (1084)
...+.+++++++|...++...++.+.+|+.. +.. ....+. .....+.+++++++
T Consensus 19 ~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~-----------------------~~~~~~--~~~~~~~~i~~~~~ 72 (300)
T 2qc5_A 19 DSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRI-----------------------KEFEVP--TPDAKVMCLIVSSL 72 (300)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCE-----------------------EEEECS--STTCCEEEEEECTT
T ss_pred CCCcceeeECCCCCEEEEcCCCCeEEEECCC-Cce-----------------------EEEECC--CCCCcceeEEECCC
Confidence 4577899999999977776677888887643 211 111111 13356789999999
Q ss_pred CCEEEEEe-CCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecccccCEE
Q 001403 806 DAYLFSAS-GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVT 882 (1084)
Q Consensus 806 g~~l~~~s-dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~h~~~V~ 882 (1084)
|.++++.. ++.|..||.. ++... .+......+.++++.+ +++++++...++.|..||.. ++... .+......+.
T Consensus 73 g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~ 149 (300)
T 2qc5_A 73 GDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGL-NGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPA 149 (300)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECS-TTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEE
T ss_pred CCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECC-CCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCce
Confidence 98777765 5889999988 55432 2222346789999999 78888877778899999987 65442 2333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce
Q 001403 883 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC 961 (1084)
Q Consensus 883 ~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~ 961 (1084)
++++.++|++.++...++.|..+|. +++... +... ... ..+..++++++|.+.++. ..+.|.+|+. +++.
T Consensus 150 ~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~~---~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~ 220 (300)
T 2qc5_A 150 FITLGSDNALWFTENQNNSIGRITN-TGKLEE---YPLP-TNA---AAPVGITSGNDGALWFVEIMGNKIGRITT-TGEI 220 (300)
T ss_dssp EEEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECS-STT---CCEEEEEECTTSSEEEEETTTTEEEEECT-TCCE
T ss_pred eEEECCCCCEEEEecCCCeEEEECC-CCcEEE---eeCC-CCC---CCcceEEECCCCCEEEEccCCCEEEEEcC-CCcE
Confidence 9999999997777766788999998 444322 1111 111 257899999999877775 4568999998 5554
Q ss_pred eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 962 LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 962 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
.......+...+.+++++++|+..++...++.|..|+. ++... .+. .+.. . -.+.+++.+| +|...++
T Consensus 221 ~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~----~~~~--~--~~~~~i~~~~-~g~l~v~- 288 (300)
T 2qc5_A 221 SEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQ----LQTE--N--AEPHGITFGK-DGSVWFA- 288 (300)
T ss_dssp EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEE----CCST--T--CCCCCEEECT-TSCEEEE-
T ss_pred EEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEE----CCcc--C--CccceeEeCC-CCCEEEE-
Confidence 44333344567899999999997777666789999998 45544 221 1111 1 1244677888 4665544
Q ss_pred eCCCcEEEEcC
Q 001403 1042 LTNGEVYVIEP 1052 (1084)
Q Consensus 1042 ~~dg~v~vw~~ 1052 (1084)
+.. .|..+++
T Consensus 289 ~~~-~i~~~~p 298 (300)
T 2qc5_A 289 LKC-KIGKLNL 298 (300)
T ss_dssp CSS-EEEEEEE
T ss_pred ccC-ceEEeCC
Confidence 444 7777765
No 210
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=99.40 E-value=1.2e-11 Score=152.19 Aligned_cols=253 Identities=12% Similarity=0.031 Sum_probs=161.6
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCE
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI 411 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~ 411 (1084)
+|+..+..++|||||++||+++.+ .|.. ..+|++||+.++...... . +...+..++|||| +.|+.++.++.
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~--~G~e--~~~i~v~dl~tg~~~~~~--~--~~~~~~~~~wspD-~~l~~~~~~~~ 230 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQD--GGSD--WRTVKFVGVADGKPLADE--L--KWVKFSGLAWLGN-DALLYSRFAEP 230 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEE--TTCS--EEEEEEEETTTCCEEEEE--E--EEEESCCCEESTT-SEEEEEECCCC
T ss_pred CCCEEEEeEEECCCCCEEEEEEcC--CCCc--eEEEEEEECCCCCCCCcc--C--CCceeccEEEECC-CEEEEEEecCc
Confidence 344478899999999999997654 2221 157999999987653221 1 1122357899999 99999876553
Q ss_pred --------------EEEEEccCCccccc-eeeeecccccEeEEEeecCCCcEEEEEEeC-----CCcEEEEECCCC--ce
Q 001403 412 --------------VQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDAVTG--SR 469 (1084)
Q Consensus 412 --------------v~iwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d~~i~vwd~~~g--~~ 469 (1084)
|.+|++.++..... +.....+...+..+.|||||+. |+..+. ...|.+||+.++ .+
T Consensus 231 ~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 231 KEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp --------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred ccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEEEEECCCCCCcc
Confidence 88999987753211 1122233345889999999994 554443 348999999887 32
Q ss_pred eeEeccCCCcEEEEeecccCCCcEEEEEecC----CeEEEEECCCCC-c-eEeecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 470 TYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLG-A-RVDYDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 470 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d----g~i~iwd~~~~~-~-~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
...+..+...+....+ ++|..|+..+.+ +.|.+||+++.. . ...+..+...+..++++ ++.++++...
T Consensus 309 ~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~-- 382 (741)
T 1yr2_A 309 VTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIH-- 382 (741)
T ss_dssp CEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEE--
T ss_pred cEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEE--
Confidence 4556555555544432 355677766653 459999988742 2 33334444456677776 4455555543
Q ss_pred CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----CCCcEEEEECCCCeE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL 604 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----~dg~i~iwd~~~~~~ 604 (1084)
++...|+++++. +.....+..+. ...+..+.++|+++.++... ..++|++||+.+++.
T Consensus 383 dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 383 DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 334556666764 45555555432 25688899999988666432 357899999998873
No 211
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.37 E-value=1.8e-10 Score=125.83 Aligned_cols=174 Identities=9% Similarity=0.058 Sum_probs=135.8
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce-----------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
..+..+++++...++++++...+.+|++++.. ...... +.. |+.++| |+++|+++ .++.|++|
T Consensus 38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~-lp~-V~~l~f---d~~~L~v~-~~~~l~v~ 111 (388)
T 1xip_A 38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE-IPD-VIFVCF---HGDQVLVS-TRNALYSL 111 (388)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE-CTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEee-CCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence 36899999999999999998888889986543 112222 445 999999 57888888 88999999
Q ss_pred EcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 864 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 864 d~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
|+.+.........|...+.++.+.+.. +++++.||+|.+||+..+.... +. ..|++++|||+| ..
T Consensus 112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---------~~---~~Vs~v~WSpkG-~~ 176 (388)
T 1xip_A 112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---------LA---QNVTSFDVTNSQ-LA 176 (388)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---------EE---ESEEEEEECSSE-EE
T ss_pred EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---------cc---CCceEEEEcCCc-eE
Confidence 998866556666788889988877653 8889999999999999866422 11 169999999999 44
Q ss_pred EEEeCCeEEEEEcCCcce--eeEee-----c---CCCCCEEEEEEccCCCEEEEEe
Q 001403 944 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 944 a~~~d~~i~vwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
+...||++++|+...++. ...+. . +|...|.+|.|.+++.+|++-+
T Consensus 177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~ 232 (388)
T 1xip_A 177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG 232 (388)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence 446899999999887775 44431 1 4788999999999999988743
No 212
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.35 E-value=1.7e-10 Score=125.80 Aligned_cols=246 Identities=8% Similarity=0.059 Sum_probs=163.9
Q ss_pred eEEEEEEecCCCeEEE-------eecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE
Q 001403 728 KISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 800 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l 800 (1084)
...+++|+++|..+++ ...++.|.+|+...++. ..+.. ....++...+.++
T Consensus 19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------~~~~~----------~~~~~~~~~~~~i 76 (314)
T 1pjx_A 19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------TVICK----------PEVNGYGGIPAGC 76 (314)
T ss_dssp TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------EEEEC----------CEETTEECCEEEE
T ss_pred CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------EEEEe----------cccCCCCCCCceE
Confidence 4568899999986666 46677888876543221 00100 0000133568899
Q ss_pred EecCC-CCEEEEEeCCeEEEEEcCCceeEEE-EcC----CCCCeEEEEEcCCCCcEEEEEeCC---------------Ce
Q 001403 801 ALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------ST 859 (1084)
Q Consensus 801 ~~s~d-g~~l~~~sdg~i~vwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~la~g~~d---------------g~ 859 (1084)
+++++ |+++++...+.|.+||.. ++.... ... ....+.++++++ +++++++...+ +.
T Consensus 77 ~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~~ 154 (314)
T 1pjx_A 77 QCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFGS 154 (314)
T ss_dssp EECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCEE
T ss_pred EEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCCe
Confidence 99999 776666656689999998 665433 221 123578999999 78887776655 57
Q ss_pred EEEEEcCCceeeeeecccccCEEEEEEc----CCCCEEEEE-eCCCcEEEEeCC-CCceeeeeeeecCCCCccCCCCceE
Q 001403 860 ILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH 933 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~~V~~l~~s----pd~~~l~s~-s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~ 933 (1084)
|..|+.. ++... +..+......++|+ ||++.|..+ ..++.|.+||+. .+.......+....++. ...+..
T Consensus 155 l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~--~~~p~~ 230 (314)
T 1pjx_A 155 IYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTH--EGGADG 230 (314)
T ss_dssp EEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCS--SCEEEE
T ss_pred EEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCC--CCCCCc
Confidence 7778765 55433 33344567889999 999765544 567899999987 44332222333222221 014678
Q ss_pred EEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEEcCCC
Q 001403 934 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1002 (1084)
Q Consensus 934 ~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~i~vwd~~~~ 1002 (1084)
++++++|.+.++. .++.|.+||..+++.+..+. .+...+.+++|++||++|+++ ..++.|..|++...
T Consensus 231 i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 231 MDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred eEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999988875 67899999998787665533 455789999999999955544 45678999998753
No 213
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.33 E-value=1.7e-10 Score=140.21 Aligned_cols=257 Identities=11% Similarity=0.070 Sum_probs=168.8
Q ss_pred cCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCC-
Q 001403 332 EGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH- 410 (1084)
Q Consensus 332 ~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg- 410 (1084)
+|...+..++|||||++||.+... +|.. ..+|+|||+.++...... +.+ .....++|+ ||+.|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~--~G~~--~~~i~v~dl~tg~~~~~~--~~~--~k~~~~~Ws-Dg~~l~y~~~~~~ 196 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSL--AGSD--WREIHLMDVESKQPLETP--LKD--VKFSGISWL-GNEGFFYSSYDKP 196 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEEC--SSCC--EEEEEEEETTTCSEEEEE--EEE--EESCCCEEE-TTTEEEEEESSCC
T ss_pred CCcEEEEEEEECCCCCEEEEEEec--CCCc--eEEEEEEECCCCCCCccc--cCC--ceeccEEEe-CCCEEEEEEecCc
Confidence 456678899999999999985433 2221 178999999987643221 111 113568999 999999998774
Q ss_pred ------------EEEEEEccCCcccc-ceeeeec-ccccEeEEEeecCCCcEEEEEEe---CCCcEEEEECCCCc-eeeE
Q 001403 411 ------------IVQLYAYHGGSDAR-QQLEIDA-HVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGS-RTYS 472 (1084)
Q Consensus 411 ------------~v~iwd~~~~~~~~-~~~~l~~-h~~~V~~l~~s~d~~~l~l~s~~---~d~~i~vwd~~~g~-~~~~ 472 (1084)
.|.+|++.++..-. .+..... |...+..+.|||||+.+ +++.+ .++.|.+||+.++. ....
T Consensus 197 ~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 197 DGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp C-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred ccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEEECCCCCCceEE
Confidence 39999998875321 1112223 45567889999999963 33333 23589999998774 4556
Q ss_pred eccCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCc--eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCe
Q 001403 473 FEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES 547 (1084)
Q Consensus 473 ~~~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~ 547 (1084)
+..+....... +.+. ++.+++....+ +.|..+++++... ...+..+...+. .|+++++.|+..... ++..
T Consensus 276 l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~-~g~~ 350 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMV-DATA 350 (693)
T ss_dssp EECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEE-TTEE
T ss_pred EeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEE-CCee
Confidence 66666655554 3332 23444554443 5799999987654 233444444444 899999999887653 3456
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC----CcEEEEECCCCeEEE
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLLT 606 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d----g~i~iwd~~~~~~~~ 606 (1084)
.|++||+..+.. ..+.... ...+..+.++++++.++....+ +.++.||+.+++...
T Consensus 351 ~l~~~d~~g~~~-~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~ 410 (693)
T 3iuj_A 351 RVEQFDYEGKRV-REVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISL 410 (693)
T ss_dssp EEEEECTTSCEE-EEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEE
T ss_pred EEEEEECCCCee-EEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEE
Confidence 799999885543 3443222 2457777888888877765544 889999998876543
No 214
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=99.33 E-value=5.2e-10 Score=121.89 Aligned_cols=249 Identities=11% Similarity=0.060 Sum_probs=163.4
Q ss_pred ccCCCCceEEEEcCCCceeee-------ecccccCccccccceEEEEEcCCccccceee-eecCCCCCeEEEEEcCC-CC
Q 001403 331 IEGSSSPMSMDFHPVQHTLLL-------GLWDVNSGQKLFIRNFKVWDIGACSMLFKTA-LVRDPGVSVNRVVWSPD-GS 401 (1084)
Q Consensus 331 ~~h~~~V~~v~~spdg~~las-------~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~-~~~~h~~~V~~v~fspd-g~ 401 (1084)
...-..+.+++|+++|+++++ +..+ +.|.+||..++....... ...++...+.+++++++ |+
T Consensus 14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~---------~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~ 84 (314)
T 1pjx_A 14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPA---------GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQ 84 (314)
T ss_dssp ECCCTTCEEEEECTTSCEEEEETTCEETTEEC---------CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSE
T ss_pred hccCCCccCceECCCCCEEEEEeccccCCCCC---------CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCc
Confidence 434447889999999988877 4333 789999987654321110 01124467999999999 76
Q ss_pred EEEEEeCCCEEEEEEccCCccccc-eeeee-cccccEeEEEeecCCCcEEEEEEeCC---------------CcEEEEEC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQ-QLEID-AHVGNVNDLAFSAPCKQISVITCGDD---------------KTIKVWDA 464 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~-~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~d---------------~~i~vwd~ 464 (1084)
++++.. .+.|.+||.+ ++.... ..... .....+.+++++++|+ ++++...+ +.|..||.
T Consensus 85 l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 160 (314)
T 1pjx_A 85 LFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT 160 (314)
T ss_dssp EEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred EEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeEEEECC
Confidence 555544 4469999988 653221 10001 1224588999999998 56665544 56777876
Q ss_pred CCCceeeEeccCCCcEEEEeec--ccCCCcEEE-EEecCCeEEEEECC-CCCc-----eEeecCCC-CeEEEEEEcCCCC
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRMAYSANGR 534 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~--~~~~~~~l~-s~s~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~~~s~d~~ 534 (1084)
. ++... +..+......++++ .+++++.++ +...++.|.+|+++ .+.. ...+..+. .....++++++|+
T Consensus 161 ~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~ 238 (314)
T 1pjx_A 161 D-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp T-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred C-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCC
Confidence 5 55433 32333446777875 114665554 44567899999986 2221 12222232 5678899999998
Q ss_pred EEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCC
Q 001403 535 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK 601 (1084)
Q Consensus 535 ~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~ 601 (1084)
..++... ++.|.+||..+++.+..+..+. ..+.+++|+|+++.|+++ ..++.|..|++..
T Consensus 239 l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 8777643 4569999998787777666554 678999999999966554 4568899998864
No 215
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=99.31 E-value=5e-06 Score=98.14 Aligned_cols=531 Identities=9% Similarity=-0.028 Sum_probs=288.0
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEE
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 481 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~ 481 (1084)
+|+.+ ....|+..++++..... ...+. .-..+..++|.+.+.. ++++-..++.|..+++..+.....+........
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~~-~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNV-AIPLT-GVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEE-ECCCC-SCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcce-EEEcC-CCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 45568999998654211 11122 2345789999997774 455555688999999875543333332223456
Q ss_pred EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEee
Q 001403 482 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 561 (1084)
Q Consensus 482 ~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~ 561 (1084)
.+++.+. .+++.++-...+.|.+.+++.................+++.|....|+..... ....|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence 7777543 33555666667889999987655444443444567899999976666665421 14568888776544333
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEE
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 640 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~i 640 (1084)
.... ......++++++++.|+.+. ..+.|...|+..... ..+... ......+++.. +..+++-...+.|..
T Consensus 161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~ 232 (628)
T 4a0p_A 161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER 232 (628)
T ss_dssp EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence 3322 25688999999877777765 567899999876444 233221 22345777765 444444445788999
Q ss_pred EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeecc
Q 001403 641 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL 720 (1084)
Q Consensus 641 wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~ 720 (1084)
.|..+++....+.........+.+....... + .+.....++ +- ..+.+-. +........
T Consensus 233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~--~-------~n~C~~~ng------~C-~~~C~~~-----~~~~~~C~C 291 (628)
T 4a0p_A 233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS--G-------WNECASSNG------HC-SHLCLAV-----PVGGFVCGC 291 (628)
T ss_dssp EETTTCCSCEEEECSCCSCCEEEEECGGGSC--C-------CCTTTTTGG------GC-SSEEEEE-----TTTEEEEEC
T ss_pred EECCCCCceEEEecCCCCcceeeeeeecccc--c-------ceEeccCCC------Cc-chhhhcC-----CCCCeeEEc
Confidence 9987776555554333323333222110000 0 000000000 00 0000000 000000000
Q ss_pred CC--ccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCcc
Q 001403 721 PS--KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP 798 (1084)
Q Consensus 721 ~~--~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 798 (1084)
+. ........+. +....++.+. ...|+-..+. ..... ...++. ..-..+.
T Consensus 292 ~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~----------------------~~~~~-~~~l~~-~~~~~~~ 343 (628)
T 4a0p_A 292 PAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVID----------------------EQQSP-DIILPI-HSLRNVR 343 (628)
T ss_dssp STTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCC----------------------TTCCC-CEECCC-TTCSCEE
T ss_pred CCCcEecccCCcCc---cccceeeeec-cceEEEEecc----------------------cccCc-eEEEEe-hhcCCce
Confidence 00 0000000111 1122222222 2223222111 10000 000110 1234577
Q ss_pred EEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcC------CCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 799 CFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
+++|.+.+..|..+. .+.|..+++........+.. ....+..+|+....+++..+-+..+.|.+.++. |+.
T Consensus 344 ~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~ 422 (628)
T 4a0p_A 344 AIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRS 422 (628)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCE
T ss_pred EEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCe
Confidence 899999888887776 47888888764433333332 234678999998445566666678899999986 554
Q ss_pred eeee-cccccCEEEEEEcC-CCCEEEEEeCCC--cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 871 ISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 871 ~~~l-~~h~~~V~~l~~sp-d~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
...+ ........+|++.| .|.++.+-.... .|...+++...... .+.. .. .....+++++++..|..+
T Consensus 423 ~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~gla~D~~~~~LYw~ 494 (628)
T 4a0p_A 423 VGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFFS---GL---SKPIALALDSRLGKLFWA 494 (628)
T ss_dssp EEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEE
T ss_pred EEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEec---cC---CCccEEEEeCCCCEEEEE
Confidence 4343 33446789999999 555555533332 56666676533211 1211 11 256899999998888775
Q ss_pred --eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEE
Q 001403 947 --HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~ 1007 (1084)
..+.|...++. |.....+.........++++.. +...++-...+.|...|..+|+....
T Consensus 495 D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 495 DSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp ETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEE
T ss_pred eCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEE
Confidence 44789999985 4444444433344567777654 45555555667888888887765433
No 216
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.31 E-value=8.5e-10 Score=118.87 Aligned_cols=229 Identities=10% Similarity=0.052 Sum_probs=150.5
Q ss_pred eEEEEEEecCCCeEEEe-ecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCC
Q 001403 728 KISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND 806 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg 806 (1084)
-.....|++++..++.. ..++.|..|+...+ . ..... ....+.+++++++|
T Consensus 14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG 65 (297)
T 3g4e_A 14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG 65 (297)
T ss_dssp BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence 34578899966555544 44677777764432 2 11111 24568899999999
Q ss_pred CEEEEEeCCeEEEEEcCCceeEEEEcC----CCCCeEEEEEcCCCCcEEEEEeCC---------CeEEEEEcCC-ceeee
Q 001403 807 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS 872 (1084)
Q Consensus 807 ~~l~~~sdg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~la~g~~d---------g~i~iwd~~~-~~~~~ 872 (1084)
+++++ .++.|.+||..+++....... ....+..++++| +|+++++...+ ..-.||.+.. ++. .
T Consensus 66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~ 142 (297)
T 3g4e_A 66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K 142 (297)
T ss_dssp SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence 95554 578899999988775433322 123578999999 78877654321 2234454443 333 2
Q ss_pred eecccccCEEEEEEcCCCCEEE-EEeCCCcEEEEeC--CCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC
Q 001403 873 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 948 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~-s~s~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 948 (1084)
.+..+......++|+||++.|. +.+.++.|.+|++ .++.......+....... ..+..++++++|.+.++. ..
T Consensus 143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~ 219 (297)
T 3g4e_A 143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG 219 (297)
T ss_dssp EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence 3333445678999999998764 5556788999997 455543333333322211 246789999999887775 56
Q ss_pred CeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEeCC
Q 001403 949 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD 991 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~d 991 (1084)
+.|.+||..+|+.+..+. .+...+++++|+ ||++.|++++..
T Consensus 220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcCC
Confidence 789999999899877754 345689999998 898887766643
No 217
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.29 E-value=1e-09 Score=123.59 Aligned_cols=248 Identities=10% Similarity=-0.001 Sum_probs=163.9
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~ 871 (1084)
.....++++++|+++++.. ++.|++||..+++........ .... ++|++ +++.|+++..++ .|.+|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 3577899999999666665 589999999988776655543 2333 99999 788888888766 8999998766543
Q ss_pred eee----cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCce-EEEEccCCCEEEEE
Q 001403 872 SKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLLV 946 (1084)
Q Consensus 872 ~~l----~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~dg~~la~~ 946 (1084)
..+ ..+...+.+++++|++..|..+..++.|+.||..++......... ..+... .... .++|+|++..|.++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv~ 284 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYMS 284 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEEE
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEEE
Confidence 333 224566788999995555555777889999999876532211110 111111 0113 89999965544443
Q ss_pred --eCCeEEEEEcCCcceeeEeecCC---------------CCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCCCceeEEe
Q 001403 947 --HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~~~~~~~~~~ 1008 (1084)
.++.|+.|+.... +..+. ++ -.....++|+++|+++++-+ .++.|+.|++.+|.+....
T Consensus 285 d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~ 361 (409)
T 3hrp_A 285 DQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA 361 (409)
T ss_dssp ETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred eCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence 5678999987633 22221 22 13478999999999888777 7899999998888754332
Q ss_pred cccc---ccCCC-CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1009 LSTA---YLRPT-TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1009 ~~~~---~~~~~-~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
.... +.... ....--.|..++++|+ +.++++-..++.|+.+.+
T Consensus 362 g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 362 GQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp ECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred CCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence 2100 00000 0001135788999994 778888888888888765
No 218
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.28 E-value=2.6e-10 Score=124.54 Aligned_cols=199 Identities=11% Similarity=-0.008 Sum_probs=128.4
Q ss_pred ccEEEecCCCCEEEEEe---CCeEEE--EEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----
Q 001403 797 VPCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---- 867 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~---- 867 (1084)
...++++|||+++++++ ++.+.+ +|+.+ +.++..... ..+.|++.+.+++.+.||.+.+.++.+
T Consensus 126 P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~ 198 (368)
T 1mda_H 126 VHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAA 198 (368)
T ss_dssp TTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCC
T ss_pred cceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECcccccc
Confidence 44678889998888876 356888 88877 444432111 223453455666677888888889887
Q ss_pred -ceeeee----ecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCC----CccCCCCceEEEEcc
Q 001403 868 -SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG----VMTLAPSETHIQFHK 938 (1084)
Q Consensus 868 -~~~~~~----l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~ 938 (1084)
++.... +.-...+. + ++++..++..+. +.|.+.|+.+........+..... ..........++|+|
T Consensus 199 ~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~ 273 (368)
T 1mda_H 199 AGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLK 273 (368)
T ss_dssp CEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEET
T ss_pred CCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcC
Confidence 554321 11122333 3 666777666667 999999997643221111111100 000001223378999
Q ss_pred CCCEEEEE-e-C--------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCE-EEEEe-CCCcEEEEEcCCCceeE
Q 001403 939 DQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 939 dg~~la~~-~-d--------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~t~~-~dg~i~vwd~~~~~~~~ 1006 (1084)
|++.+.++ . . +.+.++|+.+++.+..+..+. ...+++|++||++ +++.. .++.|.++|+.+++.+.
T Consensus 274 dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~--~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~ 351 (368)
T 1mda_H 274 NTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGH--DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQS 351 (368)
T ss_dssp TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEE--EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEE
T ss_pred CCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCC--CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEE
Confidence 99988874 3 2 357799999999888765443 6889999999984 55555 58999999999999998
Q ss_pred Eec
Q 001403 1007 RIL 1009 (1084)
Q Consensus 1007 ~~~ 1009 (1084)
++.
T Consensus 352 ~I~ 354 (368)
T 1mda_H 352 SVE 354 (368)
T ss_dssp ECC
T ss_pred EEE
Confidence 876
No 219
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=99.28 E-value=2.9e-09 Score=114.67 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=156.3
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
+..-..+..|+|++. ++++...++.|..||..+++.. .+ .....+.+++++++|+ ++++. ++.|.+||.+
T Consensus 11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~~~~i~~~~dG~--l~v~~--~~~l~~~d~~ 81 (297)
T 3g4e_A 11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ----RV-TMDAPVSSVALRQSGG--YVATI--GTKFCALNWK 81 (297)
T ss_dssp CCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE----EE-ECSSCEEEEEEBTTSS--EEEEE--TTEEEEEETT
T ss_pred CCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE----EE-eCCCceEEEEECCCCC--EEEEE--CCeEEEEECC
Confidence 334556789999655 5555566889999999987531 12 3456799999999999 45543 5689999998
Q ss_pred CCceeeEecc----CCCcEEEEeecccCCCcEEEEEecC---------CeEEEEECCCCCceEeecCCCCeEEEEEEcCC
Q 001403 466 TGSRTYSFEG----HGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN 532 (1084)
Q Consensus 466 ~g~~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d 532 (1084)
+++....... ....+..+++. ++|.++++.... ..-.+|.++.................++|+||
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~di~~d--~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~spd 159 (297)
T 3g4e_A 82 EQSAVVLATVDNDKKNNRFNDGKVD--PAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWSLD 159 (297)
T ss_dssp TTEEEEEEECCTTCSSEEEEEEEEC--TTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEECTT
T ss_pred CCcEEEEEecCCCCCCCCCCCEEEC--CCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEcCC
Confidence 8865432221 12357788884 467766654332 33456665543333333223335678999999
Q ss_pred CCEEEEEeeCCCCCeeEEEecC--CCceEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 608 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~--~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~ 608 (1084)
++.|+.+.. ..+.|.+|++ .++... +.+.........+..++++++|+..++....+.|.+||..+++.+..+
T Consensus 160 g~~lyv~~~---~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i 236 (297)
T 3g4e_A 160 HKIFYYIDS---LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTV 236 (297)
T ss_dssp SCEEEEEEG---GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEE
T ss_pred CCEEEEecC---CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEE
Confidence 998876653 2456899986 455432 122111111256788999999988888888889999999999999888
Q ss_pred cCCCCCCCcceEEEe-cCCCEEEEEECC
Q 001403 609 DAGGGLPENPRICFN-KNGTLLAVIANE 635 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s-~~~~~l~~~~~d 635 (1084)
..+. ..+.+++|. |+++.|.+++..
T Consensus 237 ~~p~--~~~t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 237 KLPV--DKTTSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp ECSS--SBEEEEEEESGGGCEEEEEEBC
T ss_pred ECCC--CCceEEEEeCCCCCEEEEEcCC
Confidence 7653 347899998 888887776653
No 220
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=99.27 E-value=2.8e-10 Score=138.30 Aligned_cols=245 Identities=9% Similarity=0.054 Sum_probs=161.1
Q ss_pred CCCCCeEEEEEcCCCCEEEEEe-----CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC---
Q 001403 386 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--- 457 (1084)
Q Consensus 386 ~h~~~V~~v~fspdg~~las~~-----~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--- 457 (1084)
+|...+..++|||||++||.+. ...+|++||+.+|+.+.. .+ +......++|+ ||+ .|+.++.+.
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~--~~~k~~~~~Ws-Dg~--~l~y~~~~~~~~ 198 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PL--KDVKFSGISWL-GNE--GFFYSSYDKPDG 198 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EE--EEEESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--cc--CCceeccEEEe-CCC--EEEEEEecCccc
Confidence 3566788999999999999653 235799999999975431 11 11113678999 999 566665553
Q ss_pred ----------cEEEEECCCCce----eeEecc-CCCcEEEEeecccCCCcEEEEEec----CCeEEEEECCCCC-ceEee
Q 001403 458 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY 517 (1084)
Q Consensus 458 ----------~i~vwd~~~g~~----~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~----dg~i~iwd~~~~~-~~~~~ 517 (1084)
.|++|++.++.. +..... |...+.++.+ ++||++|+.... +..|.++|+++.. ....+
T Consensus 199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l 276 (693)
T 3iuj_A 199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV 276 (693)
T ss_dssp ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence 499999987753 333343 4555677778 557777755433 2479999998764 33444
Q ss_pred cCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCC---
Q 001403 518 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--- 592 (1084)
Q Consensus 518 ~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg--- 592 (1084)
..+....... ++++|..|+..+........|..+|+.++.. ...+..+. ..+. .|++++++|+....++
T Consensus 277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~ 350 (693)
T 3iuj_A 277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA 350 (693)
T ss_dssp ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence 4444444444 6788888877665433357899999988654 23444444 3343 8899999888766443
Q ss_pred cEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC----CeEEEEEcCCCC
Q 001403 593 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN 647 (1084)
Q Consensus 593 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d----g~i~iwd~~~~~ 647 (1084)
.|++|++..+ ....+..... ..+..+.+++++..++....+ +.+..||+.+++
T Consensus 351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 6889998754 4455543321 235566677888877766554 789999987764
No 221
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=1.5e-10 Score=127.70 Aligned_cols=271 Identities=11% Similarity=0.028 Sum_probs=173.0
Q ss_pred CCceEEEEcCCCceeeee-cccccCccccccceEEEEEcCCcccc-cee--eeecCCCCCeEEEEEcCCCCEEEEEeC--
Q 001403 335 SSPMSMDFHPVQHTLLLG-LWDVNSGQKLFIRNFKVWDIGACSML-FKT--ALVRDPGVSVNRVVWSPDGSLLGVAYS-- 408 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~-~~d~~sg~~~~~~~v~iwd~~~~~~~-~~~--~~~~~h~~~V~~v~fspdg~~las~~~-- 408 (1084)
..+..++++|||+++++. .|+ .+.++||.+.++... +.. ....+|-..+..++|+++|+++++-..
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~--------~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~ 88 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFY--------QPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQ 88 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGG--------CCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHH
T ss_pred CCcceEEECCCCCEEEEeCCCC--------CCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCC
Confidence 589999999999998884 333 022455555432211 100 012245678999999999987666543
Q ss_pred ---CCEEEEEEccCCccccceeeee----cccccEeEEEeecCCCcEEEEEEe---CCCcEEEEECCCCceeeEeccCCC
Q 001403 409 ---KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 409 ---dg~v~iwd~~~~~~~~~~~~l~----~h~~~V~~l~~s~d~~~l~l~s~~---~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
++.|.+||+.+++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+||+.+++..+.+.+|..
T Consensus 89 ~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~ 166 (343)
T 2qe8_A 89 SKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARVLQGYPG 166 (343)
T ss_dssp HTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEECTTCTT
T ss_pred cCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEEecCCCc
Confidence 578999999988754422 221 12345689999987653 455555 678999999999987777765532
Q ss_pred cEE-EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCC--
Q 001403 479 PVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-- 555 (1084)
Q Consensus 479 ~v~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~-- 555 (1084)
... ...+. .+|..+.+.+.+|.++.|. ..+..++++|||+.|+.+... ...++.++..
T Consensus 167 ~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~~~~~~~ 227 (343)
T 2qe8_A 167 IAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYRIKSADL 227 (343)
T ss_dssp TSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEEEEHHHH
T ss_pred cccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEEEEHHHh
Confidence 111 02222 2456677777788876663 145789999999999887642 2245555432
Q ss_pred -Cce-----Eee--eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 556 -EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 556 -~~~-----~~~--~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
.+. ... ...++. .....++++++|..+++...++.|.+||..+++........ .......++|.+++.
T Consensus 228 ~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~~~g~ 303 (343)
T 2qe8_A 228 SNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFGSDGY 303 (343)
T ss_dssp TCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEECTTSC
T ss_pred cCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEECCCCc
Confidence 110 000 111222 34567899999998888888999999999667654443321 223467899999988
Q ss_pred EEEEEECCCeE
Q 001403 628 LLAVIANENRI 638 (1084)
Q Consensus 628 ~l~~~~~dg~i 638 (1084)
++++....+.+
T Consensus 304 l~v~~~~~~~~ 314 (343)
T 2qe8_A 304 LYFDCNQLHHS 314 (343)
T ss_dssp EEEEECCGGGS
T ss_pred EEEEeCccccc
Confidence 77776654433
No 222
>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}
Probab=99.25 E-value=2.4e-10 Score=126.04 Aligned_cols=273 Identities=7% Similarity=-0.003 Sum_probs=176.6
Q ss_pred ceEEEEEEecCCCeEEEeec--CCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecC
Q 001403 727 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK 804 (1084)
Q Consensus 727 ~~i~~l~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~ 804 (1084)
..+..++++++|+.+++... ++.+++|.+..+. . .-|. +.. .....+-..+..+++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~------~------~~~p--~~~------~~~~~~~~~p~gv~~d~ 76 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG------L------IPFP--PQS------GNAIITFDTVLGIKSDG 76 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE------E------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC------e------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence 46789999999998777542 3436677654211 0 1110 000 00112556789999999
Q ss_pred CCCEEEEEe------CCeEEEEEcCCceeEEEEcCC------CCCeEEEEEcCCCCcEEEEEe---CCCeEEEEEcCCce
Q 001403 805 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE 869 (1084)
Q Consensus 805 dg~~l~~~s------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~la~g~---~dg~i~iwd~~~~~ 869 (1084)
+|+++++-. ++.|.+||+.+++.+..+..+ ...+..++++++++.++++.. .++.|.+||+.+++
T Consensus 77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~ 156 (343)
T 2qe8_A 77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL 156 (343)
T ss_dssp SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence 998666543 378999999999977766532 235689999984455555555 67899999999988
Q ss_pred eeeeecccccCEE-EEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe-
Q 001403 870 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH- 947 (1084)
Q Consensus 870 ~~~~l~~h~~~V~-~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~- 947 (1084)
....+.+|..... ...++++|..+.+.+.+++++.|.. .+..++|+|||+.|.++.
T Consensus 157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~ 214 (343)
T 2qe8_A 157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM 214 (343)
T ss_dssp EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence 7777766533111 1456667888888888888766531 256799999999888853
Q ss_pred C-CeEEEEEcCC---c-----ceeeE-eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCC
Q 001403 948 E-THLAIYEAEE---L-----TCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1017 (1084)
Q Consensus 948 d-~~i~vwd~~~---~-----~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1017 (1084)
. +.+..++... + +.... ...++......++++++|.++++...++.|.+||..+|+...... .+
T Consensus 215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~----~~-- 288 (343)
T 2qe8_A 215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT----DE-- 288 (343)
T ss_dssp SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE----CG--
T ss_pred CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE----CC--
Confidence 3 3455554321 1 00000 011234456789999999999999899999999996676532222 01
Q ss_pred CcccceeeeEEEECCCCCCEEEEEeCCCcEEEEc
Q 001403 1018 TSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1051 (1084)
Q Consensus 1018 ~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~ 1051 (1084)
...++..++++| |+.++++....+.+.+|.
T Consensus 289 ---~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 289 ---KLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ---GGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ---ceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 124567889998 578888877665554443
No 223
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=99.24 E-value=3.1e-09 Score=119.58 Aligned_cols=241 Identities=9% Similarity=0.054 Sum_probs=162.8
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCC--cEEEEECCC
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVT 466 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~ 466 (1084)
.....++|+|+|+++++...++.|++||.+++.... .... ..... ++|+++++ .|+.+..++ .|.+|+..+
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~---~~~~-~~~~~-ia~~~~g~--~l~~~d~~~~~~I~~~d~~~ 203 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTT---VHPG-FKGGK-PAVTKDKQ--RVYSIGWEGTHTVYVYMKAS 203 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEE---EEET-CCBCB-CEECTTSS--EEEEEBSSTTCEEEEEEGGG
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEE---eecc-CCCCc-eeEecCCC--cEEEEecCCCceEEEEEcCC
Confidence 468899999999988887778999999999875432 1222 22333 99999999 667666655 799999877
Q ss_pred CceeeEe----ccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe----ecCCCCeE--EEEEEcCCCCEE
Q 001403 467 GSRTYSF----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGC--TRMAYSANGRRL 536 (1084)
Q Consensus 467 g~~~~~~----~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~i--~~~~~s~d~~~l 536 (1084)
+.....+ ......+.++++++. ++ .|+.+..++.|+.||.+....... .......- ..++|+|++..|
T Consensus 204 ~~~~~~~g~~~~~~~~~p~~iav~p~-~g-~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l 281 (409)
T 3hrp_A 204 GWAPTRIGQLGSTFSGKIGAVALDET-EE-WLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF 281 (409)
T ss_dssp TTCEEEEEECCTTSCSCCCBCEECTT-SS-EEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE
T ss_pred CceeEEeeeccchhcCCcEEEEEeCC-CC-eEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE
Confidence 6654444 224556778888542 33 455577789999999987654332 22221112 289999976666
Q ss_pred EEEeeCCCCCeeEEEecCCCceEeeeeeccc------------cccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCe
Q 001403 537 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ 603 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~------------~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~ 603 (1084)
+.+.. ..+.|+.|+.... +..+.+.. ..-.....++++++++.+++-+ .++.|+.|+..++.
T Consensus 282 yv~d~---~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 282 YMSDQ---NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGY 356 (409)
T ss_dssp EEEET---TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTE
T ss_pred EEEeC---CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCE
Confidence 65542 3667999987643 22332221 0013478999999999777777 88999999988887
Q ss_pred EEEEEcCCC------------CCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 604 LLTTIDAGG------------GLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 604 ~~~~~~~~~------------~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
......... .......++++++|.++++-..++.|+.+++
T Consensus 357 v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 357 VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 544332100 1223578999999888877777888887765
No 224
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.22 E-value=4.7e-09 Score=126.05 Aligned_cols=228 Identities=14% Similarity=0.132 Sum_probs=153.2
Q ss_pred CCeEEEEEcCCceeEEEEcCCCCC--------------------------------eEEEEEcCCCCcEEEEEeCCC---
Q 001403 814 GGVISLYIVMTFKTILTIMPPSPT--------------------------------ATSLAFNPHDNNVIAIGMDDS--- 858 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~d~~~la~g~~dg--- 858 (1084)
++.|+.+|..+|+.+..+...... ...++++| ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 577888888888887766532211 13578888 677888887664
Q ss_pred ----------------eEEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCC---CEEEEEeCCCcEEEEeCCCC
Q 001403 859 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 859 ----------------~i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~---~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.|..+|..+|+.+..++. |. ....-+....|| ..++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999999877653 31 122333444578 68999999999999999998
Q ss_pred ceeeeeeeecCC--------CC------------c-----cCC--CCceEEEEccCCCEEEEE-eC--------------
Q 001403 911 GIQTCRSLQTPD--------GV------------M-----TLA--PSETHIQFHKDQTRFLLV-HE-------------- 948 (1084)
Q Consensus 911 ~~~~~~~~~~~~--------~~------------~-----~~~--~~v~~~~~s~dg~~la~~-~d-------------- 948 (1084)
+......+.... +. . ... ..-..++|+|++.++.+. .+
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 865432211000 00 0 000 001367899999888773 21
Q ss_pred -----------------------------CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEc
Q 001403 949 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 949 -----------------------------~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~ 999 (1084)
+.|..||+.+|+.+.+... ..++....++.+|.++++++.||.+++||+
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~ 505 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH--VSPWNGGTLTTAGNVVFQGTADGRLVAYHA 505 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC--CCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence 6799999999998877543 345555667788889999999999999999
Q ss_pred CCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE-EEeC----------------CCcEEEEcCCC
Q 001403 1000 SNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA-VGLT----------------NGEVYVIEPNE 1054 (1084)
Q Consensus 1000 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~-~~~~----------------dg~v~vw~~~~ 1054 (1084)
.+|+.+.++.... + +...-+.|.+ ||..++ +.+. .+.+.+|.+..
T Consensus 506 ~tG~~lw~~~~~~----~-----~~~~p~~y~~-~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~ 567 (677)
T 1kb0_A 506 ATGEKLWEAPTGT----G-----VVAAPSTYMV-DGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGG 567 (677)
T ss_dssp TTCCEEEEEECSS----C-----CCSCCEEEEE-TTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETC
T ss_pred CCCceeeeeeCCC----C-----cccCCEEEEe-CCEEEEEEeccCCccccccccccccCCCCeEEEEeccc
Confidence 9999998887322 1 2222345544 465444 3322 47889998863
No 225
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.20 E-value=2.9e-08 Score=111.06 Aligned_cols=211 Identities=9% Similarity=0.042 Sum_probs=129.3
Q ss_pred CCeEEEEEcCCceeEEEEcCCCCCe-----EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC----EEE-
Q 001403 814 GGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VTG- 883 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~----V~~- 883 (1084)
++.+..+|..+|+.+.......... ...... + ..+++++.++.|..+|..+|+.+......... +..
T Consensus 152 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~ 228 (376)
T 3q7m_A 152 NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRL 228 (376)
T ss_dssp TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC----------
T ss_pred CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccc
Confidence 5677777777777766654332111 222232 2 36777888999999999999988766532110 000
Q ss_pred --EEEcC--CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCc
Q 001403 884 --LVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL 959 (1084)
Q Consensus 884 --l~~sp--d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~ 959 (1084)
+.-+| .+..+..++.++.|..+|..+++..-... . + ....+... ++..++...++.|..+|..+|
T Consensus 229 ~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~---~-~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 229 SDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRE---L-G------SVNDFIVD-GNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp -CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEEC---C-C------CEEEEEEE-TTEEEEEETTCCEEEEETTTC
T ss_pred cccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeecc---C-C------CCCCceEE-CCEEEEEcCCCeEEEEECCCC
Confidence 11111 24667778889999999999887443211 1 1 12333332 444444467789999999999
Q ss_pred ceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE
Q 001403 960 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1039 (1084)
Q Consensus 960 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1039 (1084)
+.+..........+..... .+..|++++.+|.|.++|..+|+.+.+..... ..+... .... +..|.
T Consensus 298 ~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~--------~~~~~~-~~~~---~~~l~ 363 (376)
T 3q7m_A 298 VTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS--------SGFQTE-PVAA---DGKLL 363 (376)
T ss_dssp CEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT--------TCBCSC-CEEE---TTEEE
T ss_pred cEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC--------CcceeC-CEEE---CCEEE
Confidence 9877644222222333333 25678888899999999999999987765211 112111 1112 46888
Q ss_pred EEeCCCcEEEEcC
Q 001403 1040 VGLTNGEVYVIEP 1052 (1084)
Q Consensus 1040 ~~~~dg~v~vw~~ 1052 (1084)
+++.+|.|+.|+.
T Consensus 364 v~~~~G~l~~~~~ 376 (376)
T 3q7m_A 364 IQAKDGTVYSITR 376 (376)
T ss_dssp EEBTTSCEEEEEC
T ss_pred EEeCCCEEEEEeC
Confidence 9999999999873
No 226
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=99.19 E-value=1.2e-05 Score=94.73 Aligned_cols=518 Identities=8% Similarity=-0.017 Sum_probs=268.9
Q ss_pred CCEEEEEEccCCc-cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCce-eeEeccCCCcEEEEeec
Q 001403 409 KHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 409 dg~v~iwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~-~~~~~~h~~~v~~~~~~ 486 (1084)
...|+..++.+.. ... .+.........++|++.+.. ++++-...+.|..+++..... ...+..--.....+++.
T Consensus 17 ~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD 92 (619)
T 3s94_A 17 RRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACD 92 (619)
T ss_dssp SSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEE
T ss_pred cccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEE
Confidence 4457777777542 111 12223345779999997774 344445577899999875532 22233223567888885
Q ss_pred ccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc
Q 001403 487 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 566 (1084)
Q Consensus 487 ~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~ 566 (1084)
+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ....|...++............
T Consensus 93 ~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~~ 169 (619)
T 3s94_A 93 WL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINSE 169 (619)
T ss_dssp TT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECSS
T ss_pred ec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeCC
Confidence 43 33566666677899999988655444443444456789999987776665421 1345776666533222222222
Q ss_pred ccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 567 QLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 567 ~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
......+++++++..|+.+. ..+.|...|+............ ......+++..+ ..+++-...+.|...|..+
T Consensus 170 ---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 170 ---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp ---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESSS
T ss_pred ---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECCC
Confidence 24678999999877777664 5678888888754443332211 122356777655 3444444567899999887
Q ss_pred CCeeeeccccccceeEEEEc-CCCceeeeeccCc--------eeEecCCCCCCCCccceecccCccccccceeecCccce
Q 001403 646 SNSVDAAGVLSDNLRKLSVN-PISTVTGAGIANG--------SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ 716 (1084)
Q Consensus 646 ~~~~~~~~~~~~~i~~~~~~-p~~~~~~~~~~~~--------~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~ 716 (1084)
++....+.........+++. |..... +...+ .+.+. +|......+...+|....
T Consensus 244 g~~~~~i~~~~~~p~~i~v~~~~~qp~--~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~------------ 306 (619)
T 3s94_A 244 GEGLREIHSDIFSPMDIHAFSQQRQPN--ATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL------------ 306 (619)
T ss_dssp CCCCEECCSCCCCCSEEEECCGGGSCC--CCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC------------
T ss_pred CcccEEEecCCCCCcEEEEEccccCCC--ccccccCCCCcccceEEC---CCCCCCceEeCCchheec------------
Confidence 76655544332222333332 111100 00000 00000 000000000000000000
Q ss_pred eeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCC
Q 001403 717 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 796 (1084)
Q Consensus 717 ~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1084)
. ...++. +....++..+..+.|+..++..... . ...... ..-..
T Consensus 307 -----~----d~~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~ 350 (619)
T 3s94_A 307 -----E----NGKTCK---DGATELLLLARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRH 350 (619)
T ss_dssp -----T----TSSCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------C-CEECCC---SCCSS
T ss_pred -----c----cCcccC---CCCceEEEEEcccceEEEecCCCcc--------------------c-eeEEec---cccCc
Confidence 0 000000 0011122223333444443322110 0 000011 12334
Q ss_pred ccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 797 VPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 797 v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
+.+++|.+.+..|..++ .+.|..+++........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l 429 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKIL 429 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEE
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEE
Confidence 67899998777777665 58899999876444333433335667899986455566666677899999987543 3333
Q ss_pred -cccccCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCC
Q 001403 875 -EGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HET 949 (1084)
Q Consensus 875 -~~h~~~V~~l~~spd~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~ 949 (1084)
...-....++++.|....|..+.. ...|...+++...... .+.. .. .....+++++++..|..+ ..+
T Consensus 430 ~~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~~~---~l---~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 430 ISEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LVNT---SL---GWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp ECTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EECS---SC---SCEEEEEEETTTTEEEEEETTTT
T ss_pred EECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EEeC---CC---CCCeeeEEcccCCEEEEEECCCC
Confidence 233456889999997445544432 3567777776533211 1111 11 257789999988877775 456
Q ss_pred eEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCc
Q 001403 950 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~ 1003 (1084)
.|...++.... ...+.........++++..+ ...++-...+.|..-|..+|.
T Consensus 502 ~I~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~ 553 (619)
T 3s94_A 502 KIEVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE 553 (619)
T ss_dssp EEEEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred EEEEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence 78888886333 33332222222345555443 333443445678777877773
No 227
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.19 E-value=4.3e-09 Score=126.68 Aligned_cols=193 Identities=16% Similarity=0.180 Sum_probs=132.3
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 859 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~la~g~~dg~--- 859 (1084)
++.|..||..+|+.+..+.... ..-..++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888776654210 0112578888 6778888888764
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001403 860 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 860 ----------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~ 911 (1084)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999887754 32 2222223333665 78899999999999999998
Q ss_pred eeeeeeeec------------------------CCCC-----ccC--CCCceEEEEccCCCEEEEE-e------------
Q 001403 912 IQTCRSLQT------------------------PDGV-----MTL--APSETHIQFHKDQTRFLLV-H------------ 947 (1084)
Q Consensus 912 ~~~~~~~~~------------------------~~~~-----~~~--~~~v~~~~~s~dg~~la~~-~------------ 947 (1084)
......+.. ..+. ... ...-..++|+|+..++.+. .
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 653211110 0000 000 0012347899998888773 1
Q ss_pred ---------------------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001403 948 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 994 (1084)
Q Consensus 948 ---------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i 994 (1084)
++.|..||+.+|+.+.+... ..++..-.++..|.++++++.||.+
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l 498 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV 498 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence 36799999999998877543 2334444667788899999999999
Q ss_pred EEEEcCCCceeEEec
Q 001403 995 SIHEASNLEVQCRIL 1009 (1084)
Q Consensus 995 ~vwd~~~~~~~~~~~ 1009 (1084)
+.||.++|+.+.++.
T Consensus 499 ~a~D~~tG~~lw~~~ 513 (689)
T 1yiq_A 499 IAYAADTGEKLWEQP 513 (689)
T ss_dssp EEEETTTCCEEEEEE
T ss_pred EEEECCCCccceeee
Confidence 999999999998876
No 228
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.19 E-value=2.7e-09 Score=115.43 Aligned_cols=238 Identities=12% Similarity=0.052 Sum_probs=156.0
Q ss_pred cceeeecccCCCCceEEEEcCCCce-eeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCE
Q 001403 324 KTVAQTLIEGSSSPMSMDFHPVQHT-LLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL 402 (1084)
Q Consensus 324 ~~~~~~l~~h~~~V~~v~~spdg~~-las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~ 402 (1084)
...+..|..+.......+|+|+|++ +++...+ +.|..|+....... +..+...+..++++++|++
T Consensus 34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~---------~~i~~~~~~g~~~~-----~~~~~~~~~gl~~d~dG~l 99 (305)
T 3dr2_A 34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVG---------RRVLGWREDGTVDV-----LLDATAFTNGNAVDAQQRL 99 (305)
T ss_dssp TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTT---------TEEEEEETTSCEEE-----EEESCSCEEEEEECTTSCE
T ss_pred CCceEEEecCCcCccCCeEeCCCCEEEEEECCC---------CEEEEEeCCCCEEE-----EeCCCCccceeeECCCCCE
Confidence 3445556666667889999999994 4554433 78899987432211 3335678999999999997
Q ss_pred EEEEeCCCEEEEEEccCCccccceeeeecc-cccEeEEEeecCCCcEEEEE----EeC-------------CCcEEEEEC
Q 001403 403 LGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DKTIKVWDA 464 (1084)
Q Consensus 403 las~~~dg~v~iwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~l~l~s----~~~-------------d~~i~vwd~ 464 (1084)
+++...++.|.+|+.+ ++.........+. ...+.+++++++|+ +.+| |.. .+.|..||.
T Consensus 100 ~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~ 176 (305)
T 3dr2_A 100 VHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPP 176 (305)
T ss_dssp EEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECS
T ss_pred EEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcC
Confidence 7766666789999986 4421111011111 13467899999998 6665 321 256888887
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCc---eEeecCCCCeEEEEEEcCCCCE
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRR 535 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d~~~ 535 (1084)
.+++..... .......++|+ ++++.|+.+... +.|.+|++..... .............++++++|++
T Consensus 177 ~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~l 252 (305)
T 3dr2_A 177 DGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWL 252 (305)
T ss_dssp SSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCE
T ss_pred CCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCE
Confidence 777654433 33456778884 466777776655 7899999875431 1111122334457899999995
Q ss_pred EEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCc
Q 001403 536 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV 593 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~ 593 (1084)
.++. . + .|.+|+. +++.+..+.... .+..++|+++++.|+.++.++.
T Consensus 253 wv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 253 WSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp EECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTEE
T ss_pred EEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCeE
Confidence 5443 2 2 3999998 577777766544 4788999999999988887643
No 229
>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*
Probab=99.19 E-value=3e-10 Score=124.19 Aligned_cols=189 Identities=8% Similarity=0.048 Sum_probs=134.5
Q ss_pred eEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCC
Q 001403 728 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA 807 (1084)
Q Consensus 728 ~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~ 807 (1084)
.+..+++++....+++++.+ .+.+|++........... .. +. . .... .+.. |+.++| |+.
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~---~~---~~----~-~~~~-----~lp~-V~~l~f--d~~ 98 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDS---TP---LT----F-KWEK-----EIPD-VIFVCF--HGD 98 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSS---CC---CC----C-SEEE-----ECTT-EEEEEE--ETT
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhcccc---cc---cc----c-eEEe-----eCCC-eeEEEE--CCC
Confidence 57889999999998888887 455588654220000000 00 00 0 0111 1445 999999 999
Q ss_pred EEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEc
Q 001403 808 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 887 (1084)
Q Consensus 808 ~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~s 887 (1084)
+|+++.++.|++||+.+.........+...+.++.+.+ . -+|+++.||.|.+||+.++.... +...|+|++||
T Consensus 99 ~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WS 171 (388)
T 1xip_A 99 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVT 171 (388)
T ss_dssp EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEEC
T ss_pred EEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEc
Confidence 99999889999999987776666666777788888876 3 28889999999999999877643 55789999999
Q ss_pred CCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecC---CCCccCCCCceEEEEccCCCEEEE
Q 001403 888 DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP---DGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 888 pd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
|+| ++.|..||++++|+.+.++......+..+ ..+......|.++.|.+++.++++
T Consensus 172 pkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 172 NSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp SSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred CCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 999 78899999999999988664212223111 110011236999999999999998
No 230
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=99.17 E-value=5.1e-09 Score=125.78 Aligned_cols=332 Identities=10% Similarity=0.050 Sum_probs=189.3
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCe-----------EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEe
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 560 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~ 560 (1084)
..++.++.++.|..+|..+++.+..+...... ...+++ ++..+++++. ++.|+.+|..+|+.+
T Consensus 78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV 151 (677)
T ss_dssp TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence 35666777788888888887777666543210 112222 4566776654 667999999999999
Q ss_pred eeeecc-ccc-cCceEE-EEEcCCCCEEEEEEC------CCcEEEEECCCCeEEEEEcCCCCC-----------------
Q 001403 561 RTYQGL-QLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL----------------- 614 (1084)
Q Consensus 561 ~~~~~~-~~~-~~~v~~-~~~s~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~----------------- 614 (1084)
..+... ... ...+.. ... .+..+++++. +|.|+.||..+|+.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w 229 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW 229 (677)
T ss_dssp EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence 888764 100 001111 111 2345666543 799999999999999887653221
Q ss_pred -------------CCcceEEEecCCCEEEEEECCC-------------------eEEEEEcCCCCeeeeccccccceeEE
Q 001403 615 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL 662 (1084)
Q Consensus 615 -------------~~v~~v~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~i~~~ 662 (1084)
.....++++|++..+++++.++ .|..+|..+++.....+....
T Consensus 230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~----- 304 (677)
T 1kb0_A 230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG----- 304 (677)
T ss_dssp CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-----
T ss_pred cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-----
Confidence 0113578889888888887664 355555555544433321100
Q ss_pred EEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCC---C
Q 001403 663 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q 739 (1084)
Q Consensus 663 ~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g---~ 739 (1084)
..|+... .....-+....+| .
T Consensus 305 ----------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~ 328 (677)
T 1kb0_A 305 ----------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRK 328 (677)
T ss_dssp ----------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEE
T ss_pred ----------------------------------------ccccccc----------------CCCcEEEecccCCcEee
Confidence 0111110 0111112223355 5
Q ss_pred eEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCcccc----------ccCcCCCCCCCccEEEecCCCCEE
Q 001403 740 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL 809 (1084)
Q Consensus 740 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~dg~~l 809 (1084)
.++.++.+|.+.++|...++....-.........-+| .++..... ...+...-...-..++++|++.++
T Consensus 329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~ 407 (677)
T 1kb0_A 329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (677)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence 5777777788887776655431110000000000112 22221100 001110011112467889988877
Q ss_pred EEEeC--------------------------------------------CeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 810 FSASG--------------------------------------------GVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 810 ~~~sd--------------------------------------------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
++... |.|..||+.+++.+..+.. ...+....++.
T Consensus 408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~ 486 (677)
T 1kb0_A 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT 486 (677)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence 76421 6799999999999888763 23344455666
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccc-cCEEEEEEcCCCCEEEE
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS 895 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spd~~~l~s 895 (1084)
++.++++++.||.+++||..+|+.+..+.... ....-+.|.++|+.++.
T Consensus 487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~ 536 (677)
T 1kb0_A 487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS 536 (677)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence 56688889999999999999999998887433 22334566788875554
No 231
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=99.16 E-value=5.5e-09 Score=112.98 Aligned_cols=231 Identities=14% Similarity=0.072 Sum_probs=150.8
Q ss_pred CCCCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECC
Q 001403 387 PGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 465 (1084)
Q Consensus 387 h~~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~ 465 (1084)
........+|+|+|+ ++++...++.|..|+.. ++ .. .+..+...+..++++++|+ ++++...++.|.+|+..
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~~~ 115 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSDAD 115 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEECTT
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEECCC
Confidence 445677899999999 55566678899999984 43 22 3445667789999999998 56655556789999975
Q ss_pred CCceeeEeccC----CCcEEEEeecccCCCcEEEE----Eec-------------CCeEEEEECCCCCceEeecCCCCeE
Q 001403 466 TGSRTYSFEGH----GAPVYSLCPHAKENIHFIFS----ISV-------------DGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 466 ~g~~~~~~~~h----~~~v~~~~~~~~~~~~~l~s----~s~-------------dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
|+........ ...+..+++ +++|.++++ |.. .+.|..||..+++..... .....
T Consensus 116 -g~~~~~~~~~~~~~~~~~~~i~~--d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p 190 (305)
T 3dr2_A 116 -GQAHLLVGRYAGKRLNSPNDLIV--ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP 190 (305)
T ss_dssp -SCEEEEECEETTEECSCCCCEEE--CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred -CCEEEEEeccCCCccCCCCCEEE--CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence 6533221111 123556777 457777776 321 245666766555544332 33456
Q ss_pred EEEEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEe--eeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECC
Q 001403 525 TRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 600 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~--~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~ 600 (1084)
..++|+||++.|+.+.... .+.+.|++|++..+... ..+... .......++++++|+. .++..+ .|.+|+.
T Consensus 191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~--~~~~pdgi~~d~~G~l-wv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASV--PDGLPDGFCVDRGGWL-WSSSGT-GVCVFDS- 265 (305)
T ss_dssp EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECC--SSSCCCSEEECTTSCE-EECCSS-EEEEECT-
T ss_pred cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEEC--CCCCCCeEEECCCCCE-EEecCC-cEEEECC-
Confidence 7899999999888775421 01256999998765411 111111 1234567889999984 444444 4999998
Q ss_pred CCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCe
Q 001403 601 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 637 (1084)
Q Consensus 601 ~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~ 637 (1084)
.++.+..+.... .+.+++|+++++.|.+++.++.
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 577777776544 3788999999998988887643
No 232
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.16 E-value=2e-08 Score=109.55 Aligned_cols=223 Identities=14% Similarity=0.059 Sum_probs=146.5
Q ss_pred CeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 390 SVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 390 ~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
-...++|+|++. ++++...++.|..||..+++.. .+ .+...+.+++|+++|+ ++++. . ..|.+||..+++
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~----~~-~~~~~v~~i~~~~dg~--l~v~~-~-~gl~~~d~~~g~ 120 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKT----VH-ALPFMGSALAKISDSK--QLIAS-D-DGLFLRDTATGV 120 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE----EE-ECSSCEEEEEEEETTE--EEEEE-T-TEEEEEETTTCC
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEE----EE-ECCCcceEEEEeCCCe--EEEEE-C-CCEEEEECCCCc
Confidence 345688999855 4555556789999999887532 12 2345799999999998 55543 3 459999998887
Q ss_pred eeeEecc----CCCcEEEEeecccCCCcEEEEEec------CCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEE
Q 001403 469 RTYSFEG----HGAPVYSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 538 (1084)
Q Consensus 469 ~~~~~~~----h~~~v~~~~~~~~~~~~~l~s~s~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~ 538 (1084)
....... ....+..+++.+ +|.++++... .+.|..++ . .....+.........++|+|||+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~i~~d~--~G~l~v~~~~~~~~~~~~~l~~~~--~-g~~~~~~~~~~~~~~i~~s~dg~~lyv 195 (326)
T 2ghs_A 121 LTLHAELESDLPGNRSNDGRMHP--SGALWIGTMGRKAETGAGSIYHVA--K-GKVTKLFADISIPNSICFSPDGTTGYF 195 (326)
T ss_dssp EEEEECSSTTCTTEEEEEEEECT--TSCEEEEEEETTCCTTCEEEEEEE--T-TEEEEEEEEESSEEEEEECTTSCEEEE
T ss_pred EEEEeeCCCCCCCCCCCCEEECC--CCCEEEEeCCCcCCCCceEEEEEe--C-CcEEEeeCCCcccCCeEEcCCCCEEEE
Confidence 5432221 123578888854 6666665442 23454454 3 222222222234678999999998877
Q ss_pred EeeCCCCCeeEEEecCC--Cc-eE-----eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 539 CGTSKEGESFLVEWNES--EG-AI-----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 539 ~~~~~~~~~~i~~wd~~--~~-~~-----~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+.. ..+.|.+||.. ++ .. ...+.... ..+..++++++|...++...++.|.+||. +++.+..+..
T Consensus 196 ~~~---~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~ 268 (326)
T 2ghs_A 196 VDT---KVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV 268 (326)
T ss_dssp EET---TTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC
T ss_pred EEC---CCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC
Confidence 642 24679999975 55 32 11222122 45678999999988777777789999998 6777777765
Q ss_pred CCCCCCcceEEEe-cCCCEEEEEECC
Q 001403 611 GGGLPENPRICFN-KNGTLLAVIANE 635 (1084)
Q Consensus 611 ~~~~~~v~~v~~s-~~~~~l~~~~~d 635 (1084)
.. ..+.+++|+ ++++.|++++..
T Consensus 269 ~~--~~~~~~af~g~d~~~L~vt~~~ 292 (326)
T 2ghs_A 269 PG--KQTTCPAFIGPDASRLLVTSAR 292 (326)
T ss_dssp SC--SBEEEEEEESTTSCEEEEEEBC
T ss_pred CC--CCcEEEEEecCCCCEEEEEecC
Confidence 43 247899998 888877666554
No 233
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=99.16 E-value=1e-08 Score=123.33 Aligned_cols=382 Identities=11% Similarity=0.105 Sum_probs=215.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc----------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
.++.++.++.|.-+|.++|+.+-++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 72 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~v~v~~~dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 72 VMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV----WKGKVYVGVLDGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp EEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE----ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence 4666777889999999999998777543221 0 11122 2357888999999999999999988766
Q ss_pred cCC-C-CeEEEEEEcC---CCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccc-----------------------
Q 001403 518 DAP-G-LGCTRMAYSA---NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQ----------------------- 567 (1084)
Q Consensus 518 ~~~-~-~~i~~~~~s~---d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~----------------------- 567 (1084)
... . .....+..+| ++ .++++.... ..++.|+.||..+|+.+..+....
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 226 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDA 226 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSST
T ss_pred cCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCce
Confidence 543 1 1101111112 44 444443211 135789999999999987765211
Q ss_pred -----cccCceEEEEEcCCCCEEEEEECCCc-------------------EEEEECCCCeEEEEEcCCCCC-------CC
Q 001403 568 -----LQHNSVSVVHFDTAKDQILAAGDDHV-------------------IKIWDMNKVQLLTTIDAGGGL-------PE 616 (1084)
Q Consensus 568 -----~~~~~v~~~~~s~~~~~l~~~~~dg~-------------------i~iwd~~~~~~~~~~~~~~~~-------~~ 616 (1084)
........++++|++..++.++.++. |..||..+|+.+..++...+. ..
T Consensus 227 w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~ 306 (689)
T 1yiq_A 227 YVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQH 306 (689)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCC
Confidence 00011125788899999999887764 999999999999887653211 01
Q ss_pred cceEEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCcc
Q 001403 617 NPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE 693 (1084)
Q Consensus 617 v~~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l 693 (1084)
........+|+ .++.++.+|.++++|..+++.+......... +.-.+.+. .+..+
T Consensus 307 ~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~~~~---------------------~~~pi 364 (689)
T 1yiq_A 307 MILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQS-WTKGMDMK---------------------TGRPI 364 (689)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCS-SEEEEETT---------------------TTEEE
T ss_pred cEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccc-cccccCcc---------------------CCCcc
Confidence 11112223565 7888999999999999999887544321100 00000000 00000
Q ss_pred ceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 694 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 694 ~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
.... ..|.. +.....+..+.......-..++++|+...+++...+....++......
T Consensus 365 ~~~~-----~~~~~----~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~-------------- 421 (689)
T 1yiq_A 365 LDEE-----NAAYW----KNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAP-------------- 421 (689)
T ss_dssp ECHH-----HHCTT----TSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCC--------------
T ss_pred cchh-----hcccc----CCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccc--------------
Confidence 0000 00000 000111122221122233458999998888888776544443221100
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCC---CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCc
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 849 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~ 849 (1084)
.|....+. . .... .+...|. +....... +|.|..||+.+++.+..+..+.. ...-.++. .+.
T Consensus 422 ~~~~~~~~-~---------~~g~--~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g~~~t-agg 487 (689)
T 1yiq_A 422 KRNPFKSM-Y---------QLGL--RTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGGTLST-AGN 487 (689)
T ss_dssp CCCSCTTS-C---------CCSS--EECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCCEEEE-TTT
T ss_pred cccccccc-c---------ccCc--cccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCccceE-CCC
Confidence 01110000 0 0000 0000000 00000001 37899999999999888765432 23335555 566
Q ss_pred EEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEE
Q 001403 850 VIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILV 894 (1084)
Q Consensus 850 ~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~ 894 (1084)
++++|+.||.|+.||.++|+.+.+++...+. ..-+.|+.||+..+
T Consensus 488 lvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv 533 (689)
T 1yiq_A 488 LVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYV 533 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred EEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEE
Confidence 8899999999999999999999888754332 23467778887544
No 234
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=99.16 E-value=5e-08 Score=109.16 Aligned_cols=150 Identities=15% Similarity=0.064 Sum_probs=99.0
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccC---------CCcEE-EEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGH---------GAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h---------~~~v~-~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~ 518 (1084)
.++.++.++.|..+|.++|+.+.+.... ...+. .+.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 4777777899999999999988666542 12232 2222 23578888999999999999988877665
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccccc--CceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
........... . +..+++++. ++.|+.+|..+|+.+..+....... ......... +..+++++.++.+..
T Consensus 131 ~~~~~~~~p~~-~-~~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVV-S-DGLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEE-E-TTEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEE-E-CCEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 44322111122 1 345555543 5679999999999887776533000 000111222 457888888999999
Q ss_pred EECCCCeEEEEEcC
Q 001403 597 WDMNKVQLLTTIDA 610 (1084)
Q Consensus 597 wd~~~~~~~~~~~~ 610 (1084)
+|..+|+.+.....
T Consensus 203 ~d~~tG~~~w~~~~ 216 (376)
T 3q7m_A 203 VLMEQGQMIWQQRI 216 (376)
T ss_dssp EETTTCCEEEEEEC
T ss_pred EECCCCcEEEEEec
Confidence 99999998877754
No 235
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=99.14 E-value=2.4e-08 Score=108.91 Aligned_cols=223 Identities=12% Similarity=0.040 Sum_probs=144.8
Q ss_pred CceEEEEcCCCcee-eeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEE
Q 001403 336 SPMSMDFHPVQHTL-LLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~l-as~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~i 414 (1084)
-..+.+|+|++..| ++...+ +.|..||..++.... +. ....+.+++|+|+|+++++. .++ |.+
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~---------~~i~~~d~~~~~~~~----~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~ 113 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILE---------RELHELHLASGRKTV----HA-LPFMGSALAKISDSKQLIAS-DDG-LFL 113 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGG---------TEEEEEETTTTEEEE----EE-CSSCEEEEEEEETTEEEEEE-TTE-EEE
T ss_pred CCcCCeEeCCCCEEEEEECCC---------CEEEEEECCCCcEEE----EE-CCCcceEEEEeCCCeEEEEE-CCC-EEE
Confidence 45688999986544 444333 789999988754321 11 34679999999999887765 444 999
Q ss_pred EEccCCccccceeeee-c-ccccEeEEEeecCCCcEEEEEEeC------CCcEEEEECCCCceeeEeccCCCcEEEEeec
Q 001403 415 YAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 486 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~l~l~s~~~------d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~ 486 (1084)
||..+++... +.... + ....+.+++++|+|+ ++++... .+.|..++ +++.. .+..+......++|+
T Consensus 114 ~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~~~~i~~s 187 (326)
T 2ghs_A 114 RDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISIPNSICFS 187 (326)
T ss_dssp EETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESSEEEEEEC
T ss_pred EECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcccCCeEEc
Confidence 9998876321 11111 1 124688999999998 4554432 24555556 55433 333333456788885
Q ss_pred ccCCCcEEE-EEecCCeEEEEECC--CC-Cc-----eEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 487 AKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 487 ~~~~~~~l~-s~s~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
++++.++ +.+.++.|.+|+++ ++ .. ...+.........++++++|++.++... .+.|.+||. ++
T Consensus 188 --~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~~d~-~g 260 (326)
T 2ghs_A 188 --PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT-DG 260 (326)
T ss_dssp --TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-TC
T ss_pred --CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEEECC-CC
Confidence 4666554 44567899999986 33 21 1122223456788999999987766532 456999998 57
Q ss_pred eEeeeeeccccccCceEEEEEc-CCCCEEEEEEC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD 590 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s-~~~~~l~~~~~ 590 (1084)
+.+..+..+. ..+.+++|+ ++++.|++++.
T Consensus 261 ~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 261 NHIARYEVPG---KQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp CEEEEEECSC---SBEEEEEEESTTSCEEEEEEB
T ss_pred CEEEEEECCC---CCcEEEEEecCCCCEEEEEec
Confidence 7777776554 579999998 88887766553
No 236
>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1
Probab=99.13 E-value=5.9e-09 Score=113.83 Aligned_cols=283 Identities=10% Similarity=-0.049 Sum_probs=172.3
Q ss_pred eEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE----------CCCcEEEEECCCCeEEEEEcCCCC----
Q 001403 548 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---- 613 (1084)
Q Consensus 548 ~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~---- 613 (1084)
.|.++|..+++.+..+.... .+ .+.++||+++++++. .++.|.+||..+++.+..+...+.
T Consensus 47 ~vsvID~~t~~v~~~i~vG~---~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~ 121 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAF---LS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFS 121 (368)
T ss_dssp EEEEEETTTTEEEEEEEECT---TC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCC
T ss_pred eEEEEECCCCeEEEEEeCCC---CC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccc
Confidence 78999999999999988655 45 799999999999876 368899999999999999875411
Q ss_pred -CCCcceEEEecCCCEEEEEEC--CCeEEE--EEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCC
Q 001403 614 -LPENPRICFNKNGTLLAVIAN--ENRIKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE 688 (1084)
Q Consensus 614 -~~~v~~v~~s~~~~~l~~~~~--dg~i~i--wd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~ 688 (1084)
......++++|||++++++.. ...+.+ +|..+ +..+..... ..+. |
T Consensus 122 ~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~----------------------p 172 (368)
T 1mda_H 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIH----------------------P 172 (368)
T ss_dssp BSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCE----------------------E
T ss_pred cCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEc----------------------c
Confidence 123568999999999998874 467888 88766 222211000 0011 1
Q ss_pred CCC-ccceecccCcccccccee-----ecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 689 DVK-PEISVEAENKSEVEKPLF-----ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 689 ~~~-~l~~~~~d~~i~~w~~~~-----~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
+++ ..++.+.|+.+.+.++.. ...........+- ...+. . ++++..++..+. +.+.+.|.......
T Consensus 173 ~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~v--g~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~- 244 (368)
T 1mda_H 173 GAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNC--SSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGAT- 244 (368)
T ss_dssp EETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCB--CSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCE-
T ss_pred CCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeC--CCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcce-
Confidence 111 122223334443333322 1000000000000 11222 3 666666666666 88888776432100
Q ss_pred CcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--C--------CeEEEEEcCCceeEEEEc
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVISLYIVMTFKTILTIM 832 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--d--------g~i~vwd~~~~~~~~~~~ 832 (1084)
.+..|........... ........++++||++.+.++. . +.+.++|+.+++.+.++.
T Consensus 245 --------v~~~~~~~~~~~~~~~-----~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 245 --------MKAAIDGNESGRKADN-----FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp --------EECCCCSSCTHHHHTT-----EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred --------EEEEEEeccccccccc-----cccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 0111222111000000 0112223378999999887653 2 357799999999988876
Q ss_pred CCCCCeEEEEEcCCCCc-EEEEEe-CCCeEEEEEcCCceeeeeecccccCEEEEEEcC
Q 001403 833 PPSPTATSLAFNPHDNN-VIAIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 888 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~-~la~g~-~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~sp 888 (1084)
... ....++|+| |++ ++++.. .++.|.++|+.+++.+.++..... ...+++.+
T Consensus 312 vg~-~p~gi~~s~-Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~-P~~i~~~~ 366 (368)
T 1mda_H 312 NGH-DSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDKG-PESLSVQN 366 (368)
T ss_dssp EEE-EECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSC-CCEEECCC
T ss_pred CCC-CcceEEECC-CCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCC-CCEEEeec
Confidence 433 688999999 666 566666 599999999999999999875543 34555543
No 237
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.11 E-value=1.2e-07 Score=103.45 Aligned_cols=174 Identities=14% Similarity=0.085 Sum_probs=119.8
Q ss_pred CeEEEEEcCCceeEEEEcCCC---CCeEEEEEcCCCCcEEEEEe-------------------CCCeEEEEEcCCceeee
Q 001403 815 GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM-------------------DDSTILIYNARSSEVIS 872 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~la~g~-------------------~dg~i~iwd~~~~~~~~ 872 (1084)
|.+.++|..+++.+.++.... .....+-|+| +++.+++.. .+.+|.+||+.+++.+.
T Consensus 164 g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~ 242 (462)
T 2ece_A 164 GGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH 242 (462)
T ss_dssp CEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE
T ss_pred CeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee
Confidence 679999999999998886332 2234588899 788887774 36899999999998887
Q ss_pred eeccc--ccCEEEEEE--cCCCCEEEEEe------CCCcEEEEeCCCCceeeeeeeecCCCC------------ccCCCC
Q 001403 873 KLEGH--SKRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGV------------MTLAPS 930 (1084)
Q Consensus 873 ~l~~h--~~~V~~l~~--spd~~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~~~~------------~~~~~~ 930 (1084)
++.-- ......+.| +|+++++..++ .+++|.+|..+.+.......+...... ......
T Consensus 243 tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~ 322 (462)
T 2ece_A 243 SLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPL 322 (462)
T ss_dssp EEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCC
T ss_pred EEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCc
Confidence 77642 123445555 99999988777 467898887776554333332211100 000135
Q ss_pred ceEEEEccCCCEEEEE--eCCeEEEEEcCC---cceeeEeecC-------C------CCCEEEEEEccCCCEEEEEe
Q 001403 931 ETHIQFHKDQTRFLLV--HETHLAIYEAEE---LTCLKQWFPI-------S------SVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 931 v~~~~~s~dg~~la~~--~d~~i~vwd~~~---~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l~t~~ 989 (1084)
...+.+|+||++|.++ ..+.|.+||+.. .+.+..+..+ | .+.-..+++||||++|+++.
T Consensus 323 pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 323 VTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred eeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 7899999999999997 457899999863 3444443332 1 01357899999999999987
No 238
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=99.09 E-value=4.4e-08 Score=106.71 Aligned_cols=232 Identities=14% Similarity=0.088 Sum_probs=151.5
Q ss_pred Eec--CCCCEEEEEe--CCeEEEEEcCCc----eeEEEEc-------CCCCCeEEEEEcCCCCcEEEEEeCC------Ce
Q 001403 801 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST 859 (1084)
Q Consensus 801 ~~s--~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~la~g~~d------g~ 859 (1084)
.++ +++++|++.+ ++.|.++|+.+. +...++. ........+.++| ++ ++++...+ |.
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~ 165 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG 165 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence 446 8899998887 688999999765 6666663 1112456778899 77 66666555 78
Q ss_pred EEEEEcCCceeeeeeccccc---CEEEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCceeeeee
Q 001403 860 ILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS 917 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~---~V~~l~~spd~~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~ 917 (1084)
|.++|..+++.+.++..-.+ --..+.|+|+++.+++.. .+.+|.+||+.+++... .
T Consensus 166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t 243 (462)
T 2ece_A 166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S 243 (462)
T ss_dssp EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence 99999999999988863222 234588899999999885 36889999999864333 2
Q ss_pred eecCCCCccCCCCceEEEE--ccCCCEEEEEe-------CCeEEEEEcCCcceeeEe----ec----C-----------C
Q 001403 918 LQTPDGVMTLAPSETHIQF--HKDQTRFLLVH-------ETHLAIYEAEELTCLKQW----FP----I-----------S 969 (1084)
Q Consensus 918 ~~~~~~~~~~~~~v~~~~~--s~dg~~la~~~-------d~~i~vwd~~~~~~~~~~----~~----~-----------h 969 (1084)
+....... ....+.| +|+|+++.++. +++|.+|....|+..... .. + -
T Consensus 244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~ 319 (462)
T 2ece_A 244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV 319 (462)
T ss_dssp EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence 33221111 2445555 99999988843 357877665544311110 00 0 0
Q ss_pred CCCEEEEEEccCCCEEEEEeC-CCcEEEEEcCC---CceeEEecccccc-----CCCCcccceeeeEEEECCCCCCEEEE
Q 001403 970 SVPISQATFSCDCRMVFTSFV-DGTLSIHEASN---LEVQCRILSTAYL-----RPTTSCLHVYPHAIAAHPLKPTQFAV 1040 (1084)
Q Consensus 970 ~~~v~~l~fs~dg~~l~t~~~-dg~i~vwd~~~---~~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~p~d~~~l~~ 1040 (1084)
......+.+|+||++|+++.. .+.|.++|+.. .+++..+....-. +.+ ......|..++++| ||++|.+
T Consensus 320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G-~~~~ggPr~~~lSp-DGk~LyV 397 (462)
T 2ece_A 320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAG-HKLTGAPQMLEISR-DGRRVYV 397 (462)
T ss_dssp CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTS-CCCCSCCCCEEECT-TSSEEEE
T ss_pred CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeecccccccc-ccCCCCCCEEEEcC-CCCEEEE
Confidence 245788999999999987775 58999999863 3455444422110 000 00012467789999 6899988
Q ss_pred Ee
Q 001403 1041 GL 1042 (1084)
Q Consensus 1041 ~~ 1042 (1084)
+.
T Consensus 398 aN 399 (462)
T 2ece_A 398 TN 399 (462)
T ss_dssp EC
T ss_pred Ec
Confidence 88
No 239
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=99.08 E-value=6.1e-09 Score=114.26 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=176.4
Q ss_pred eEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe
Q 001403 437 NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 437 ~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~ 516 (1084)
.+.....++. +..++.++.|..|| .+|+.+.........+.++.. ..++ .+..++.+ +..+|. +++....
T Consensus 23 ~~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~ 92 (330)
T 3hxj_A 23 SSPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWR 92 (330)
T ss_dssp CCCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGG
T ss_pred cCceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEE
Confidence 3445556665 66677788999999 889887666544445566655 3344 45555544 777775 3333333
Q ss_pred ecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEE
Q 001403 517 YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI 596 (1084)
Q Consensus 517 ~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i 596 (1084)
+...........+. +..+.+++. ++.|..+|.. ++....+.... ..+.++...+++. ++.++.++.|..
T Consensus 93 ~~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~ 161 (330)
T 3hxj_A 93 FDTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYA 161 (330)
T ss_dssp SCC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEE
T ss_pred EECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEE
Confidence 33222222223333 444555543 4569999988 77766655443 3455566666665 666778899999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeecc
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 676 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~ 676 (1084)
+|.. ++....+..... .+.++...+++.+++. + +.+..+| .+++.......
T Consensus 162 ~d~~-g~~~~~~~~~~~--~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~---------------------- 212 (330)
T 3hxj_A 162 INPD-GTEKWRFKTNDA--ITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA---------------------- 212 (330)
T ss_dssp ECTT-SCEEEEEECSSC--CCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC----------------------
T ss_pred ECCC-CCEeEEEecCCC--ceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc----------------------
Confidence 9998 777766654322 3556666666664433 3 5566665 33321111000
Q ss_pred CceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeecc
Q 001403 677 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP 756 (1084)
Q Consensus 677 ~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~ 756 (1084)
T Consensus 213 -------------------------------------------------------------------------------- 212 (330)
T 3hxj_A 213 -------------------------------------------------------------------------------- 212 (330)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCC
Q 001403 757 RNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP 836 (1084)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~ 836 (1084)
....+.+++..++|...+...++.+..+|. +++....+.....
T Consensus 213 ------------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~ 255 (330)
T 3hxj_A 213 ------------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKR 255 (330)
T ss_dssp ------------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSC
T ss_pred ------------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCC
Confidence 111233445555555444444566666653 4444444443333
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
.+.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|.+. .++.+|.+++...+.
T Consensus 256 ~~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 256 IESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE 324 (330)
T ss_dssp CCSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred ccccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence 344556655 45 5666888888999995 677776665555667777787777654 588899999887765
No 240
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.07 E-value=7e-09 Score=117.21 Aligned_cols=346 Identities=11% Similarity=0.030 Sum_probs=202.3
Q ss_pred cEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe----------cCCeEEEEECCCCCceEe
Q 001403 447 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------VDGKIKAWLYDSLGARVD 516 (1084)
Q Consensus 447 ~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s----------~dg~i~iwd~~~~~~~~~ 516 (1084)
+..+.||+..|.++|+-+.+++.+..+.-....-. .-|-.++....++..+ .+|. ....
T Consensus 15 ~~~f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~-~g~g~~~es~~~l~~~~~~~~~~~~~~~g~----------~~~~ 83 (595)
T 1fwx_A 15 YYGFWSSGQSGEMRILGIPSMRELMRVPVFNRCSA-TGWGQTNESVRIHERTMSERTKKFLAANGK----------RIHD 83 (595)
T ss_dssp EEEEECCBTTCEEEEEEETTCCEEEEEESSSCCTT-TCTTTBHHHHHHHHTTCCHHHHHHHHHTTC----------SSCC
T ss_pred EEEEeeCCcCceEEEEecCCcceEEEeeeecCCCC-cccCCchhHHHHHhccCCccchhhhhccCc----------eecc
Confidence 34678899999999999999999988753211000 0000000000111000 0010 0000
Q ss_pred ecCCCCeEEEEEE---cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEE-c-CCCCEEEEEEC-
Q 001403 517 YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAGD- 590 (1084)
Q Consensus 517 ~~~~~~~i~~~~~---s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~-s-~~~~~l~~~~~- 590 (1084)
.+..+. ..+++ .+||++++.+.. .+..|.+.|+.+.++...+.-.. ......+++ + |++++++++++
T Consensus 84 -~gd~hh-~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~ 156 (595)
T 1fwx_A 84 -NGDLHH-VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGED 156 (595)
T ss_dssp -CCCBCC-EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECS
T ss_pred -cCCCCc-cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEeccc
Confidence 011111 22333 348999998653 36679999999999888554322 235778887 5 99999999852
Q ss_pred -----------------CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 591 -----------------DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 591 -----------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
++.+.+.|..+.+...++...+. ...++++|+|+++++.+.+.. .+..+....
T Consensus 157 ~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se-------~~~~i~~~~ 226 (595)
T 1fwx_A 157 ETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSE-------KGMTLPEMT 226 (595)
T ss_dssp CEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTT-------CCSSHHHHT
T ss_pred ccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcc-------cCcchhhcc
Confidence 45799999999999998876543 357889999999999887531 010000000
Q ss_pred ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEE
Q 001403 654 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT 733 (1084)
Q Consensus 654 ~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~ 733 (1084)
. . .-..+.+.+.... ..
T Consensus 227 ~--~----------------------------------------~~d~v~V~~~~~~---------------------~~ 243 (595)
T 1fwx_A 227 A--A----------------------------------------EMDHIVVFNIAEI---------------------EK 243 (595)
T ss_dssp C--C----------------------------------------SEEEEEEEEHHHH---------------------HH
T ss_pred c--c----------------------------------------ccceEEEeeccce---------------------eE
Confidence 0 0 0001111111000 01
Q ss_pred EecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCc-cccccCcCCCCCCCccEEEecCCCCEEEEE
Q 001403 734 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSA 812 (1084)
Q Consensus 734 ~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~ 812 (1084)
+.++|++... +.+.|.|....+ +.. +.... -.....++.++|||++++++
T Consensus 244 ~v~~Gk~~~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~ 294 (595)
T 1fwx_A 244 AIAAGDYQEL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVA 294 (595)
T ss_dssp HHHHTCSEEE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEE
T ss_pred eccCCCeeEE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEe
Confidence 2233333222 235554433210 111 11111 12356689999999999998
Q ss_pred e--CCeEEEEEcCCce------------eEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC----------c
Q 001403 813 S--GGVISLYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------S 868 (1084)
Q Consensus 813 s--dg~i~vwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~----------~ 868 (1084)
+ +++|.++|+.+.+ ...... -......++|+| +|...++..-|++|.+||+.+ .
T Consensus 295 ~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~ 372 (595)
T 1fwx_A 295 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVD 372 (595)
T ss_dssp CTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCC
T ss_pred CCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccc
Confidence 7 5889999999763 233332 345688999999 776666777899999999987 4
Q ss_pred eeeeeecccccCE-----EEEEEcCCCCEEEEEeC---CCc----------EEEEeCCCCceee
Q 001403 869 EVISKLEGHSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT 914 (1084)
Q Consensus 869 ~~~~~l~~h~~~V-----~~l~~spd~~~l~s~s~---dg~----------I~iwd~~~~~~~~ 914 (1084)
+.+.++..|-.+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 373 ~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 373 PIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp CEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred eeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 5666666554321 22356899999998753 442 2889997666433
No 241
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=98.99 E-value=1.6e-08 Score=114.22 Aligned_cols=229 Identities=9% Similarity=0.005 Sum_probs=156.1
Q ss_pred cEEEecC-----CCCEEEEEe--CCeEEEEEcCCceeEEEEcCC-CCCeEEEEE-c-CCCCcEEEEEe------------
Q 001403 798 PCFALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM------------ 855 (1084)
Q Consensus 798 ~~l~~s~-----dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~la~g~------------ 855 (1084)
...+.|. ||+++.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++
T Consensus 88 hh~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~ 166 (595)
T 1fwx_A 88 HHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTN 166 (595)
T ss_dssp CCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSS
T ss_pred CccccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcc
Confidence 3356665 899999887 477999999999988855433 346788888 5 8 788888774
Q ss_pred ------CCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCC-----------------------------
Q 001403 856 ------DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------------------------- 900 (1084)
Q Consensus 856 ------~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg----------------------------- 900 (1084)
.++.+.+.|..+.+.+.++.--. ....++++|||+++++.+.+.
T Consensus 167 l~~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v 245 (595)
T 1fwx_A 167 MEDVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAI 245 (595)
T ss_dssp TTCGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHH
T ss_pred cccccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEec
Confidence 34589999999998888776322 346688999999999988653
Q ss_pred ---------cEEEEeCCC--CceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc-------
Q 001403 901 ---------QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT------- 960 (1084)
Q Consensus 901 ---------~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~------- 960 (1084)
.|.|.|..+ +... ...+... ....++.++|||++++++ .+++|.++|+.+.+
T Consensus 246 ~~Gk~~~i~~V~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l 317 (595)
T 1fwx_A 246 AAGDYQELNGVKVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENA 317 (595)
T ss_dssp HHTCSEEETTEEEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC
T ss_pred cCCCeeEECcEEEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECccccccccccc
Confidence 356666665 2210 1112111 135579999999999986 56789999999764
Q ss_pred -----eeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC----------CceeEEeccccccCCCCcccceee
Q 001403 961 -----CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------LEVQCRILSTAYLRPTTSCLHVYP 1025 (1084)
Q Consensus 961 -----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~~~v~~ 1025 (1084)
....... ......++|++||...++...|+.|.+||+.+ ...+.++..+ +-+. ..-.+
T Consensus 318 ~~~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~-yqpG----h~~~~ 390 (595)
T 1fwx_A 318 DPRSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVH-YQPG----HLKTV 390 (595)
T ss_dssp CGGGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECS-SCEE----EEEET
T ss_pred CcccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecc-cccc----cceec
Confidence 2233222 45678999999995455667899999999988 4455555421 1111 01122
Q ss_pred eEEEECCCCCCEEEEEeCC
Q 001403 1026 HAIAAHPLKPTQFAVGLTN 1044 (1084)
Q Consensus 1026 ~~~~~~p~d~~~l~~~~~d 1044 (1084)
+.++.+| ||++|+++..-
T Consensus 391 ~g~t~~~-DGk~l~~~Nk~ 408 (595)
T 1fwx_A 391 MGETLDA-TNDWLVCLSKF 408 (595)
T ss_dssp TTTSTTC-CSSEEEEEESC
T ss_pred cceEeCC-CCCEEEEcCCC
Confidence 3345677 68888887653
No 242
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.97 E-value=6e-10 Score=123.76 Aligned_cols=190 Identities=7% Similarity=-0.039 Sum_probs=112.5
Q ss_pred CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 399 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 399 dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
++..+++++.|+.|..||..+|+.+- .+.. +.+.+..+..++. ++++++.|+.|+.||.++|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 57889999999999999999997654 3333 4565666667777 677778899999999999998777654422
Q ss_pred cEEEEeecccC-CCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 479 PVYSLCPHAKE-NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 479 ~v~~~~~~~~~-~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
... ...|.- ++..+++++.++.+..||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 110 001111 23578888999999999999988877665443 2345678888888775 677999999999
Q ss_pred eEeeeeeccccccCceEEEEEcCCC---CEEEEEECCCcEEEEECCCCeEEEEEcC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA 610 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 610 (1084)
+.+..+.... .....+.++. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8876665322 1222333332 5677889999999999999999887764
No 243
>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*
Probab=98.95 E-value=0.00027 Score=83.32 Aligned_cols=474 Identities=9% Similarity=-0.047 Sum_probs=240.4
Q ss_pred CCcEEEEECCCCc-eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeecCCCCeEEEEEEcCCC
Q 001403 456 DKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG 533 (1084)
Q Consensus 456 d~~i~vwd~~~g~-~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~d~ 533 (1084)
...|+..|+.... ....+...-.....++|++. ++.++++-...+.|..++++.... ...+...-.....+++.+.+
T Consensus 17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~-~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~ 95 (619)
T 3s94_A 17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFS-HGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG 95 (619)
T ss_dssp SSBEEEECCC---------CBCCSCEEEEEEETT-TTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTT
T ss_pred cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeC-CCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecC
Confidence 5668888877553 12222223344677888653 334555555578898888876532 23333333578899999988
Q ss_pred CEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEEC--CCcEEEEECCCCeEEEEEcCC
Q 001403 534 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 534 ~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~ 611 (1084)
..|+.+.. +.+.|.+.++............- .....+++.|.+..|+.+.. .+.|...++...........
T Consensus 96 ~~ly~~d~---~~~~I~v~~~dG~~~~~l~~~~l---~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~- 168 (619)
T 3s94_A 96 EKLYWTDS---ETNRIEVSNLDGSLRKVLFWQEL---DQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS- 168 (619)
T ss_dssp TEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-
T ss_pred CEEEEEeC---CCCEEEEEECCCCCEEEEEeCCC---CCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeC-
Confidence 87777653 35679999987543322222222 45788999998777766553 46777777764433333322
Q ss_pred CCCCCcceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV 690 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~ 690 (1084)
.......+++++++..|..+.. .+.|..+++..........+....-..+++...
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~----------------------- 224 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED----------------------- 224 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-----------------------
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-----------------------
Confidence 2234578999997666666654 567888887654222211111111112222211
Q ss_pred CccceecccCccccccceeecCccceeeccCCccccceEEEEEE-ecCCCeEE--Eee----cCCceEEeeccCCccCcC
Q 001403 691 KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY-NNGGQAIF--ALA----SNGVHLMWRWPRNDLTLS 763 (1084)
Q Consensus 691 ~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-s~~g~~l~--~~~----~dg~i~vw~~~~~~~~~~ 763 (1084)
...++-...+.|...+...+... ..+. . .......+++ ++..+... .+. .-..+.+
T Consensus 225 ~ly~td~~~~~V~~~d~~tg~~~--~~i~-~---~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl----------- 287 (619)
T 3s94_A 225 ILYWTDWSTHSILACNKYTGEGL--REIH-S---DIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCL----------- 287 (619)
T ss_dssp EEEEECTTTCSEEEEESSSCCCC--EECC-S---CCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEE-----------
T ss_pred EEEEecCCCCEEEEEECCCCccc--EEEe-c---CCCCCcEEEEEccccCCCccccccCCCCcccceEE-----------
Confidence 12222222233333332211110 0000 0 0001111111 11100000 000 0000110
Q ss_pred cccceecCCeeecCCCC----CccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEE-EEcC-CCCC
Q 001403 764 TEATTKVPPRLYQPRHG----PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL-TIMP-PSPT 837 (1084)
Q Consensus 764 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~-~~~~-~~~~ 837 (1084)
-.+..+ .|.....+ .....+|. .....+|+.+..+.|+..++....... .+.. .-..
T Consensus 288 -----------~~~~~~~~~C~C~~g~~l----~~d~~~C~--~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~ 350 (619)
T 3s94_A 288 -----------MSPVKPFYQCACPTGVKL----LENGKTCK--DGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRH 350 (619)
T ss_dssp -----------ECSSTTSEEEECCTTCCB----CTTSSCBC--SSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSS
T ss_pred -----------CCCCCCCceEeCCchhee----cccCcccC--CCCceEEEEEcccceEEEecCCCccceeEEeccccCc
Confidence 000000 00000001 01111221 112346777777788888887654321 2221 2246
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
+.+++|.+.++.++.+-...+.|+.+++........+...-.....+++.+. +++.++-+..+.|.+.+++......
T Consensus 351 ~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~-- 428 (619)
T 3s94_A 351 AIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKI-- 428 (619)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE--
T ss_pred cEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEE--
Confidence 7899999845555555556789999998764433333333345678999864 4455565667889999998643211
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEE---eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCC
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDG 992 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~---~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg 992 (1084)
++.. +. .....+++.|...+|..+ ....|...++. |.....+....-.....|++++++..|+.+. ..+
T Consensus 429 l~~~--~l----~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~d-G~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~ 501 (619)
T 3s94_A 429 LISE--DL----EEPRAIVLDPMVGYMYWTDWGEIPKIERAALD-GSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTD 501 (619)
T ss_dssp EECT--TC----CSEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred EEEC--CC----CCeeeEEEEcCCCcEEEecCCCCCEEEEEccC-CCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCC
Confidence 1211 11 247899999975555543 23567777765 4333333333355778999998776666654 446
Q ss_pred cEEEEEcCCCce
Q 001403 993 TLSIHEASNLEV 1004 (1084)
Q Consensus 993 ~i~vwd~~~~~~ 1004 (1084)
.|...++.....
T Consensus 502 ~I~~~~~dG~~~ 513 (619)
T 3s94_A 502 KIEVMNTDGTGR 513 (619)
T ss_dssp EEEEEESSSCCC
T ss_pred EEEEEecCCCce
Confidence 798899875543
No 244
>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*
Probab=98.94 E-value=0.0003 Score=82.99 Aligned_cols=528 Identities=9% Similarity=-0.028 Sum_probs=271.5
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..|+.-++.+...... +.-..-..+..++|++++..|..+ ..++.|..+++++..... .+.........+++.+
T Consensus 15 ~~I~~i~l~~~~~~~~--~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~---v~~~g~~~P~GlAvD~ 89 (628)
T 4a0p_A 15 ADIRRISLETNNNNVA--IPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH---VVEFGLDYPEGMAVDW 89 (628)
T ss_dssp TEEEEEESSCTTCEEE--CCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEET
T ss_pred CcEEEEECCCCCcceE--EEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE---EEeCCCCCcceEEEEe
Confidence 5677777765432111 111123468899999976666655 457889999987653211 2222224567899987
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEE-ecCCeEEEEECCCCCceEeecCCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGL 522 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~~~ 522 (1084)
.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.++++- +..+.|...+++........ ....
T Consensus 90 ~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g~~~~I~r~~~dG~~~~~l~-~~~~ 166 (628)
T 4a0p_A 90 LGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWGGKPKIDRAAMDGSERTTLV-PNVG 166 (628)
T ss_dssp TTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEE-CSCS
T ss_pred CCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCCCCCEEEEEeCCCCceEEEE-CCCC
Confidence 7764 4455556788999997654432223234455688888653 33444443 23567888887765544333 3445
Q ss_pred eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC
Q 001403 523 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV 602 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~ 602 (1084)
....++++++++.|+.+-. +.+.|...|+..... ..+.... .....+++.. +..+++-...+.|...|..+|
T Consensus 167 ~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg 238 (628)
T 4a0p_A 167 RANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQYQ-DYIYWTDWSRRSIERANKTSG 238 (628)
T ss_dssp SEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEEEC-CEEEEecCCCCEEEEEECCCC
Confidence 6789999999888888753 356789998875443 3333222 3456777754 333344445788888888777
Q ss_pred eEEEEEcCCCCCCCcceEE-EecCCCEEEEEECCCeEEEEEcCCCCeeee-ccccccceeEEEEcCCCceeeeeccCcee
Q 001403 603 QLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 603 ~~~~~~~~~~~~~~v~~v~-~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
+....+..... ....+. +++..+. +.+... ..++.+-.. +....+... ..+|.+..+..... .
T Consensus 239 ~~~~~l~~~~~--~p~~i~v~~~~~q~---~~n~C~-----~~ng~C~~~C~~~~~~~~~--C~C~~g~~l~~d~~---~ 303 (628)
T 4a0p_A 239 QNRTIIQGHLD--YVMDILVFHSSRQS---GWNECA-----SSNGHCSHLCLAVPVGGFV--CGCPAHYSLNADNR---T 303 (628)
T ss_dssp CSCEEEECSCC--SCCEEEEECGGGSC---CCCTTT-----TTGGGCSSEEEEETTTEEE--EECSTTCEECTTSS---C
T ss_pred CceEEEecCCC--Ccceeeeeeecccc---cceEec-----cCCCCcchhhhcCCCCCee--EEcCCCcEecccCC---c
Confidence 66555543211 122332 2221110 000000 000000000 000000000 11122111110000 0
Q ss_pred EecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeec-CCceEEeeccCCc
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRND 759 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-dg~i~vw~~~~~~ 759 (1084)
.. +...+++.+. ...|+-..+.... .....++. .....+.+++|.+....|+.+.. .+.|..++.....
T Consensus 304 C~-----~~~~~Ll~s~-~~~i~~i~l~~~~---~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~ 373 (628)
T 4a0p_A 304 CS-----APTTFLLFSQ-KSAINRMVIDEQQ---SPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ 373 (628)
T ss_dssp EE-----CCSSEEEEEE-TTEEEEECCCTTC---CCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred Cc-----cccceeeeec-cceEEEEeccccc---CceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC
Confidence 00 1112222222 2233322222110 00111111 12345778999987776766554 4566655433211
Q ss_pred cCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEEE-cCCCC
Q 001403 760 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTI-MPPSP 836 (1084)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~~-~~~~~ 836 (1084)
. .. +.............+..+++...++.|..++ .+.|.+.++. |+....+ ...-.
T Consensus 374 ~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~l~ 432 (628)
T 4a0p_A 374 G-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGEQD 432 (628)
T ss_dssp C-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECTTC
T ss_pred c-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCCCC
Confidence 0 00 0000000000234578999999888777665 4789999986 4444443 33446
Q ss_pred CeEEEEEcCCCCcEEEEEeCCC--eEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQ 913 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg--~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s-~dg~I~iwd~~~~~~~ 913 (1084)
...++++.|..+.++.+-.... .|...+++...........-...+.|++.++++.|..+. ..+.|...+++.....
T Consensus 433 ~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~P~gla~D~~~~~LYw~D~~~~~I~~~~~dG~~r~ 512 (628)
T 4a0p_A 433 RPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSKPIALALDSRLGKLFWADSDLRRIESSDLSGANRI 512 (628)
T ss_dssp CEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred ceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCCccEEEEeCCCCEEEEEeCCCCEEEEEeCCCCceE
Confidence 7899999995565555543333 577777753322222232334678999999877776554 4578999999764322
Q ss_pred eeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcceeeE
Q 001403 914 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQ 964 (1084)
Q Consensus 914 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~~~~ 964 (1084)
. ....... ....+++.. + .|..+ ..+.|...|..+|+....
T Consensus 513 ~--~~~~~~~------~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~~ 555 (628)
T 4a0p_A 513 V--LEDSNIL------QPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRTK 555 (628)
T ss_dssp E--EECSSCS------CEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCEE
T ss_pred E--EEcCCCC------CcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcEE
Confidence 1 1111111 245666644 3 33332 455677777666664443
No 245
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=98.92 E-value=5.9e-08 Score=106.31 Aligned_cols=220 Identities=11% Similarity=0.070 Sum_probs=146.4
Q ss_pred CCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEE
Q 001403 805 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 884 (1084)
Q Consensus 805 dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l 884 (1084)
++...+...++.+..+|.. ++.......+...+.++...+ ++. |.+|+.++.|..||.. ++.+..+......+.++
T Consensus 107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~ 182 (330)
T 3hxj_A 107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAA 182 (330)
T ss_dssp TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCC
T ss_pred CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeee
Confidence 5544444347899999998 777777665666667777877 565 5568888999999998 88777766556667778
Q ss_pred EEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeE
Q 001403 885 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 964 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~ 964 (1084)
.+.+++.+.+.. +.|..+| .+++.... ... .. ..+.++...++|.+.+.+.++.|..+|. +++.+..
T Consensus 183 ~~d~~g~l~v~t---~~l~~~d-~~g~~~~~--~~~--~~----~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~ 249 (330)
T 3hxj_A 183 SIGKDGTIYFGS---DKVYAIN-PDGTEKWN--FYA--GY----WTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWR 249 (330)
T ss_dssp EECTTCCEEEES---SSEEEEC-TTSCEEEE--ECC--SS----CCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEE
T ss_pred EEcCCCEEEEEe---CEEEEEC-CCCcEEEE--Ecc--CC----cceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEE
Confidence 887788766543 7799999 55543221 111 11 2477888999998877777888988874 5666655
Q ss_pred eecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCC
Q 001403 965 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTN 1044 (1084)
Q Consensus 965 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d 1044 (1084)
... ....+..+.+.++|. |..++.+|.|..+|. +++....+... ...+. ++..++ +..|.+|+.+
T Consensus 250 ~~~-~~~~~~~~~~~~~g~-l~v~t~~ggl~~~d~-~g~~~~~~~~~--------~~~~~--~~~~d~--~g~l~~gt~~ 314 (330)
T 3hxj_A 250 FKT-GKRIESSPVIGNTDT-IYFGSYDGHLYAINP-DGTEKWNFETG--------SWIIA--TPVIDE--NGTIYFGTRN 314 (330)
T ss_dssp EEC-SSCCCSCCEECTTSC-EEEECTTCEEEEECT-TSCEEEEEECS--------SCCCS--CCEECT--TCCEEEECTT
T ss_pred eeC-CCCccccceEcCCCe-EEEecCCCCEEEECC-CCcEEEEEEcC--------Ccccc--ceEEcC--CCEEEEEcCC
Confidence 432 233344556666664 666778889999996 67776555421 11222 234554 3567789999
Q ss_pred CcEEEEcCCCCC
Q 001403 1045 GEVYVIEPNEPG 1056 (1084)
Q Consensus 1045 g~v~vw~~~~~~ 1056 (1084)
|.+++.......
T Consensus 315 G~~~~~~~~~~~ 326 (330)
T 3hxj_A 315 GKFYALFNLEHH 326 (330)
T ss_dssp SCEEEEEC----
T ss_pred CeEEEEeccccc
Confidence 999998775543
No 246
>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}
Probab=98.92 E-value=4e-10 Score=125.16 Aligned_cols=191 Identities=8% Similarity=0.051 Sum_probs=108.0
Q ss_pred CCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCcc
Q 001403 847 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT 926 (1084)
Q Consensus 847 d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~ 926 (1084)
++..+++++.||.|+.||..+|+.+.++.. +.+.+..+.+++..+++++.||.|+.||..+|+............ ..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~-~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPEL-VQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHH-HT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccc-cc
Confidence 456888999999999999999999988876 556666667788888888899999999998876432211110000 00
Q ss_pred CCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 927 LAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 927 ~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.+..++.++..++.+.++.|+.||..+|+.+..+.. +. ...++|++..+++++.|+.|+.||..+|+.+.
T Consensus 85 -----~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W 154 (369)
T 2hz6_A 85 -----ASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELRW 154 (369)
T ss_dssp -----TCSCC-----CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCCC
T ss_pred -----cCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEEE
Confidence 011112344433336789999999999998876442 21 24567788899999999999999999998876
Q ss_pred EeccccccCCCCcccceeeeEEEECCC--CCCEEEEEeCCCcEEEEcCCCCCCCcccC
Q 001403 1007 RILSTAYLRPTTSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 1007 ~~~~~~~~~~~~~~~~v~~~~~~~~p~--d~~~l~~~~~dg~v~vw~~~~~~~~~~~~ 1062 (1084)
++....+.. .+++++ .+..+++++.||.|+.||....+..|...
T Consensus 155 ~~~~~~~~~------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 155 NATYFDYAA------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp EEEEEEECC------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred eEecccccC------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 654222111 112220 01567788999999999998777778654
No 247
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.86 E-value=9.1e-07 Score=106.08 Aligned_cols=194 Identities=13% Similarity=0.138 Sum_probs=130.0
Q ss_pred CCeEEEEEcCCceeEEEEcCCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCCe---
Q 001403 814 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST--- 859 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~la~g~~dg~--- 859 (1084)
++.|..+|..+|+.+..+.... .....++++| +..+++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4677788888888776664210 0112468888 6678888887763
Q ss_pred ----------------EEEEEcCCceeeeeecc--cc-------cCEEEEEEcCCCC---EEEEEeCCCcEEEEeCCCCc
Q 001403 860 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 860 ----------------i~iwd~~~~~~~~~l~~--h~-------~~V~~l~~spd~~---~l~s~s~dg~I~iwd~~~~~ 911 (1084)
|..+|..+|+.+..++. |. .+.....+..+|+ .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 99999999999877753 32 2333333444775 68889999999999999988
Q ss_pred eeeeeeeec---------CCCCc--------c------CC-----CCceEEEEccCCCEEEEE-----------------
Q 001403 912 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV----------------- 946 (1084)
Q Consensus 912 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~~~~s~dg~~la~~----------------- 946 (1084)
......+.. ..+.. . .. ..-..++++|+..++.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 652111100 00000 0 00 001237888887776651
Q ss_pred --------------------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeE
Q 001403 947 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1006 (1084)
Q Consensus 947 --------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~ 1006 (1084)
.++.|.-||..+|+.+.+...+ .+.....++..|.++++++.||.+++||..+|+.+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~--~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~ 493 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW 493 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC--CCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence 1277999999999988775432 333444555678899999999999999999999998
Q ss_pred Eecc
Q 001403 1007 RILS 1010 (1084)
Q Consensus 1007 ~~~~ 1010 (1084)
++..
T Consensus 494 ~~~~ 497 (668)
T 1kv9_A 494 QFEA 497 (668)
T ss_dssp EEEC
T ss_pred EecC
Confidence 8873
No 248
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.86 E-value=5.2e-06 Score=87.40 Aligned_cols=247 Identities=12% Similarity=0.056 Sum_probs=153.7
Q ss_pred ceEEEEEcCCccccc-e-eeeecCCCCCeEEEEEcCCCCEEEEEe-CCCEEEEEEccCCccccceeeeecccccEeEEEe
Q 001403 365 RNFKVWDIGACSMLF-K-TALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 441 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~-~-~~~~~~h~~~V~~v~fspdg~~las~~-~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~ 441 (1084)
+.|+.+++....... . ..++......+..++|++++..|..+. .++.|.+++..++.... .+.........+++
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~ 86 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIAL 86 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEE
T ss_pred CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEE
Confidence 567777776543210 0 111221234578999999776666554 56789999998764221 12222246789999
Q ss_pred ecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEec---CCeEEEEECCCCCceEeec
Q 001403 442 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYD 518 (1084)
Q Consensus 442 s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~---dg~i~iwd~~~~~~~~~~~ 518 (1084)
++++.. +.++....+.|.++++..................+++++ ++..|+.+.. .+.|..++++.........
T Consensus 87 d~~~~~-lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~--~~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~ 163 (267)
T 1npe_A 87 DHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDP--VRGNLYWTDWNRDNPKIETSHMDGTNRRILAQ 163 (267)
T ss_dssp ETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEET--TTTEEEEEECCSSSCEEEEEETTSCCCEEEEC
T ss_pred EecCCe-EEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEee--CCCEEEEEECCCCCcEEEEEecCCCCcEEEEE
Confidence 998764 445555678999999764432222222224567888854 3334444443 4688888887544333332
Q ss_pred CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEE
Q 001403 519 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIW 597 (1084)
Q Consensus 519 ~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iw 597 (1084)
........+++++++..|+.+.. +.+.|.++|.........+.+. .....++.. +..++.+. ..+.|.++
T Consensus 164 ~~~~~P~gia~d~~~~~lyv~d~---~~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~ 234 (267)
T 1npe_A 164 DNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAM 234 (267)
T ss_dssp TTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred CCCCCCcEEEEcCCCCEEEEEEC---CCCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEE
Confidence 33346789999999888877653 3567999998765544433322 234566654 45565555 56899999
Q ss_pred ECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 598 DMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 598 d~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|..+++.+..+..... +....+++.|++.
T Consensus 235 d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~ 263 (267)
T 1npe_A 235 DLAISKEMDTFHPHKQ-TRLYGITIALSQC 263 (267)
T ss_dssp ETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred eCCCCCceEEEccccc-cccceeeecCccC
Confidence 9999999988864321 2357788888764
No 249
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=98.85 E-value=8.3e-06 Score=85.81 Aligned_cols=255 Identities=11% Similarity=0.015 Sum_probs=154.1
Q ss_pred CEEEEEeCCCEEEEEEccCCcccc--ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCC
Q 001403 401 SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 401 ~~las~~~dg~v~iwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
.+|..+.. +.|+.+++++..... ....+......+..++|+++++. ++++...++.|.++++..+.....+.....
T Consensus 2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~ 79 (267)
T 1npe_A 2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTCC
T ss_pred cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCCC
Confidence 45555553 468889988654211 01112222345789999997764 445555678999999876654333333334
Q ss_pred cEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce
Q 001403 479 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 558 (1084)
Q Consensus 479 ~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~ 558 (1084)
....+++.+. ++.++++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++....
T Consensus 80 ~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~~ 157 (267)
T 1npe_A 80 SPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGTN 157 (267)
T ss_dssp CEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSCC
T ss_pred CccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCCC
Confidence 6788888543 234555556678999999876443333333334678999999877776664321 13568887765332
Q ss_pred EeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CCC
Q 001403 559 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NEN 636 (1084)
Q Consensus 559 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~dg 636 (1084)
...+.... ......+++++++..|+.+. ..+.|.++|.........+... .....++.. +..+.++. ..+
T Consensus 158 -~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~~ 229 (267)
T 1npe_A 158 -RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKTN 229 (267)
T ss_dssp -CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTTT
T ss_pred -cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCCC
Confidence 22222111 24578999999887776654 5688999999765544444321 123456554 44555554 568
Q ss_pred eEEEEEcCCCCeeeeccccc-cceeEEEEcCC
Q 001403 637 RIKILETPESNSVDAAGVLS-DNLRKLSVNPI 667 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~ 667 (1084)
.|..++..+++.+..+.... .....+++.|+
T Consensus 230 ~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~ 261 (267)
T 1npe_A 230 SVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (267)
T ss_dssp EEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred eEEEEeCCCCCceEEEccccccccceeeecCc
Confidence 99999999887776664322 12344455443
No 250
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=98.84 E-value=1.1e-06 Score=105.24 Aligned_cols=376 Identities=12% Similarity=0.111 Sum_probs=205.3
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCc----------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEee
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP----------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 517 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~----------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~ 517 (1084)
.++.++.++.|.-+|.++|+.+-++...... + ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 4666677889999999999998776533211 0 11222 2357888899999999999999988766
Q ss_pred cCCCC-eEEEEEEcC--CCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeecccc------------------------
Q 001403 518 DAPGL-GCTRMAYSA--NGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL------------------------ 568 (1084)
Q Consensus 518 ~~~~~-~i~~~~~s~--d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~------------------------ 568 (1084)
..... ....+..+| .+..++++.... ..++.|+.+|..+|+.+..+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w 223 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYW 223 (668)
T ss_dssp ECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHH
T ss_pred ccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCcccee
Confidence 54211 000000111 133455443211 1257899999999999887753110
Q ss_pred ----ccCceEEEEEcCCCCEEEEEECCC-------------------cEEEEECCCCeEEEEEcCCCCC-------CCcc
Q 001403 569 ----QHNSVSVVHFDTAKDQILAAGDDH-------------------VIKIWDMNKVQLLTTIDAGGGL-------PENP 618 (1084)
Q Consensus 569 ----~~~~v~~~~~s~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~v~ 618 (1084)
.......+++.|+...++.++.++ .|..+|..+|+.+..++...+. ....
T Consensus 224 ~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~ 303 (668)
T 1kv9_A 224 KLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQIT 303 (668)
T ss_dssp HHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEE
T ss_pred eeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcE
Confidence 001112468888888998888766 3999999999999888753221 1111
Q ss_pred eEEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccce
Q 001403 619 RICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 695 (1084)
Q Consensus 619 ~v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 695 (1084)
...+..+|+ .+++++.+|.++++|..+++.+......... +...+.+. .+...+......+++
T Consensus 304 ~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~-w~~~~d~~---------~g~p~~~~~~~~~~~---- 369 (668)
T 1kv9_A 304 LAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVT-WAEKVDLA---------TGRPVEAPGVRYEKE---- 369 (668)
T ss_dssp EEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCC-SEEEECTT---------TCCEEECTTTTCSSS----
T ss_pred EEEeccCCcEEEEEEEECCCCEEEEEECCCCCEeccccccccc-cccccccc---------cCCccccccccccCC----
Confidence 222334665 6888999999999999999887654322210 00111100 000001000000000
Q ss_pred ecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeee
Q 001403 696 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY 775 (1084)
Q Consensus 696 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~ 775 (1084)
..+..+.......-..++++|+...+++...+-....... . ..|
T Consensus 370 --------------------~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~-~---------------~~~ 413 (668)
T 1kv9_A 370 --------------------PIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNE-G---------------KDF 413 (668)
T ss_dssp --------------------CEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCC-G---------------GGC
T ss_pred --------------------eeEECCCCccccCCCcceECCCCCEEEEeccccceEeeee-c---------------ccc
Confidence 0011111000111123678888877776655422221100 0 001
Q ss_pred cCCCCCccccccCcCCCCCCCccEEEecCCCCEEE-EEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEE
Q 001403 776 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI 853 (1084)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~-~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~ 853 (1084)
....+. . .... + .+..++ ... +|.|..||+.+++.+.....+. ......+.. .+.++++
T Consensus 414 ~~~~~~------~----~g~~-----~--~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~ 474 (668)
T 1kv9_A 414 VTRKAF------N----TAAG-----F--ADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQ 474 (668)
T ss_dssp CCCSSC------C----CSSC-----G--GGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEE
T ss_pred cccccc------c----cCcc-----c--cccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEE
Confidence 000000 0 0000 0 011111 122 4789999999999887765433 222233444 4668888
Q ss_pred EeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCC-EEEEEe
Q 001403 854 GMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG 897 (1084)
Q Consensus 854 g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~-~l~s~s 897 (1084)
|+.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus 475 g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~ 520 (668)
T 1kv9_A 475 GTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA 520 (668)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred ECCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence 9999999999999999998876543211 2234455676 444433
No 251
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.80 E-value=6.2e-06 Score=96.36 Aligned_cols=166 Identities=14% Similarity=0.180 Sum_probs=107.0
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEc-CCC--
Q 001403 840 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL-- 890 (1084)
Q Consensus 840 ~l~~s~~d~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pd~-- 890 (1084)
.+++.+ ...+++.+..+ +.|.-+|..+|+.+..++. |. .++. +... .+|
T Consensus 245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~ 322 (599)
T 1w6s_A 245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA 322 (599)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence 356667 55577777655 3899999999999877654 21 1222 2222 567
Q ss_pred -CEEEEEeCCCcEEEEeCCCCceeeeeeeec----------CCCCcc----------C-----------CCCceEEEEcc
Q 001403 891 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT----------L-----------APSETHIQFHK 938 (1084)
Q Consensus 891 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~----------~-----------~~~v~~~~~s~ 938 (1084)
+.++.++.+|.+.+.|..+|+..-...+.. ..+... . ...-..++++|
T Consensus 323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp 402 (599)
T 1w6s_A 323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP 402 (599)
T ss_dssp EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence 567788999999999999988654322111 000000 0 00113567888
Q ss_pred CCCEEEEE----------------------------------------eCCeEEEEEcCCcceeeEeecCCCCCEEEEEE
Q 001403 939 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF 978 (1084)
Q Consensus 939 dg~~la~~----------------------------------------~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~f 978 (1084)
+..++.+. ..+.|.-||+.+|+.+.+...+ .++..-.+
T Consensus 403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~ 480 (599)
T 1w6s_A 403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM 480 (599)
T ss_dssp TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence 77766552 2357888999999988775432 12221123
Q ss_pred ccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 979 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 979 s~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
...|.+++.++.||.++.||.++|+.+.++.
T Consensus 481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~ 511 (599)
T 1w6s_A 481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (599)
T ss_dssp EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence 3456788889999999999999999998876
No 252
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.79 E-value=0.0016 Score=82.13 Aligned_cols=575 Identities=8% Similarity=-0.018 Sum_probs=287.9
Q ss_pred cceEEEEEcCCccccceeeeecCCCCCeEEEEEc---CCCCEEEEEeCCCEEEEEEccCCccccceeeeecc---cccEe
Q 001403 364 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS---PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH---VGNVN 437 (1084)
Q Consensus 364 ~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fs---pdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h---~~~V~ 437 (1084)
+|.+++..-.-........-+. .-..++.+... ....||+.+..+.+ .|+.+... .+... ...+- ...+.
T Consensus 402 ~gsL~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev-~~~gf~~~~~TL~ 477 (1158)
T 3ei3_A 402 EGSLRIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEET-ELMGFVDDQQTFF 477 (1158)
T ss_dssp GCEEEEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEE-CCTTCCSSSCEEE
T ss_pred CCeEEEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-ccccc-ccccccCCCCcEE
Confidence 3677766543222111111122 23566666653 24678888877776 55555322 12211 11111 11121
Q ss_pred EEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceE-
Q 001403 438 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV- 515 (1084)
Q Consensus 438 ~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~- 515 (1084)
+-.+ .++ .++=.. ...|++.+...+..+..+... ...|...+.. +..++.++ .+.+.++.++.++...
T Consensus 478 ~~~l-~~~---~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n----~~~vvva~-g~~l~~fel~~~~L~~~ 547 (1158)
T 3ei3_A 478 CGNV-AHQ---QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN----SSQVVVAV-GRALYYLQIHPQELRQI 547 (1158)
T ss_dssp EEEE-TTT---EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC----SSEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred EEEc-CCC---eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC----CCEEEEEE-CCEEEEEEeeCCceeee
Confidence 1111 222 233222 345778887666667677543 2346555542 23555554 6788888776532111
Q ss_pred eecCCCCeEEEEEEcCC------CCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEc--CCCCEEEE
Q 001403 516 DYDAPGLGCTRMAYSAN------GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD--TAKDQILA 587 (1084)
Q Consensus 516 ~~~~~~~~i~~~~~s~d------~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~~l~~ 587 (1084)
....-...|.|+++.|. +++++++.. .++.++++++.+.+.+....-.. .....++.+. ....++.+
T Consensus 548 ~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~---~d~tv~I~sL~~l~~~~~~~L~~--~~~p~si~l~~~~~~~~L~i 622 (1158)
T 3ei3_A 548 SHTEMEHEVACLDITPLGDSNGLSPLCAIGLW---TDISARILKLPSFELLHKEMLGG--EIIPRSILMTTFESSHYLLC 622 (1158)
T ss_dssp EEEECSSCEEEEECCCCSSSTTCCSEEEEEET---TTTEEEEEETTTCCEEEEEECCS--SCCEEEEEEEEETTEEEEEE
T ss_pred cccCCCCceEEEEeecCCCCcccccEEEEEEC---CCCEEEEEECCCCCeEEEEECCC--CCCCcEEEEEEeCCCcEEEE
Confidence 11122447899998763 367777763 25679999998766654433211 0123333332 23457888
Q ss_pred EECCCcEEEEEC--CCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCCCeeeecccccccee-EEEE
Q 001403 588 AGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR-KLSV 664 (1084)
Q Consensus 588 ~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~-~~~~ 664 (1084)
|-.||.+.-+.+ .+|++...-...-+..++.-..+...+..-+.+..+....++.....-.+..+. ...+. ...|
T Consensus 623 gl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~~l~~s~l~--~~~v~~~~~F 700 (1158)
T 3ei3_A 623 ALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVFSNVN--LKEVNYMCPL 700 (1158)
T ss_dssp EETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSCEEEEEESSSCEEEEESSSSEEEEEBS--SSCCCEEEEE
T ss_pred EeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCceeEEEECCCCEEEEEcCCceEEeccC--hHHhceEecc
Confidence 999999865544 456655332111112234444455455444444445555555543211111111 11111 1112
Q ss_pred cCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEe
Q 001403 665 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL 744 (1084)
Q Consensus 665 ~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~ 744 (1084)
+ ....|+| ++. ..++.+++..++.........+. -...+..++++|+.+.++.+
T Consensus 701 ~------------------se~~~~g--~v~-~~~~~LrI~~i~~~~~~~~~~ip-----L~~Tprri~y~~~~~~~~v~ 754 (1158)
T 3ei3_A 701 N------------------SDGYPDS--LAL-ANNSTLTIGTIDEIQKLHIRTVP-----LYESPRKICYQEVSQCFGVL 754 (1158)
T ss_dssp C------------------CSSSTTE--EEE-ECSSCEEEEEECCSSSEEEEEEE-----CSSEEEEEEEEGGGTEEEEE
T ss_pred C------------------cccCCCc--EEE-EcCCceEEEEecccCCeeEEEEe-----CCCCceEEEEcCCCCEEEEE
Confidence 1 1111222 221 22344666665432221222222 23477899999998877666
Q ss_pred ecCCceEEeeccCC-----------------------------ccCcCcccceecCCeeecCCCCCccccccCcCCCCCC
Q 001403 745 ASNGVHLMWRWPRN-----------------------------DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE 795 (1084)
Q Consensus 745 ~~dg~i~vw~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1084)
..+... ++.... .....+.......+++.|+.+...+...++.. ..
T Consensus 755 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~---nE 829 (1158)
T 3ei3_A 755 SSRIEV--QDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQ---NE 829 (1158)
T ss_dssp EEEEEE--ECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEECCT---TE
T ss_pred EEeccc--cccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCC---Cc
Confidence 543211 111000 00000111223567888888887666666643 34
Q ss_pred CccEEE---ecCC-CCEEEEEe-----------CCeEEEEEcCCceeEEEEc-CCCCCeEEEEEcCCCCcEEEEEeCCCe
Q 001403 796 AVPCFA---LSKN-DAYLFSAS-----------GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDST 859 (1084)
Q Consensus 796 ~v~~l~---~s~d-g~~l~~~s-----------dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~dg~ 859 (1084)
.+.+++ |..+ ..++++|. .|.|.+|++..++...... ...+.+++++-- +|++|| |- ..+
T Consensus 830 ~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~--~g~Lla-~i-g~~ 905 (1158)
T 3ei3_A 830 YALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF--NGKLLA-SI-NST 905 (1158)
T ss_dssp EEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE--TTEEEE-EE-TTE
T ss_pred ceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee--CCEEEE-Ec-CCE
Confidence 444444 3332 46787764 2679999987544322211 235678887754 455544 33 478
Q ss_pred EEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 860 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 860 i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
|++|++...+.+..-..+-..|..+.....+.+++.|..-..|.+...+.............. . .+++++.|-.+
T Consensus 906 l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~D~~--~---~~vta~~~ld~ 980 (1158)
T 3ei3_A 906 VRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFN--P---NWMSAVEILDD 980 (1158)
T ss_dssp EEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEECCS--C---BCEEEEEEEET
T ss_pred EEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEeecc--c---ccEEEEEEEcc
Confidence 999999866543311111122333333335788999988887877665432211111222211 1 26889999877
Q ss_pred CCEEEEEeCCeEEEEEcCCc-------ceeeEeecCC-CCCEEEEE---EccCC---------CEEEEEeCCCcEEEEEc
Q 001403 940 QTRFLLVHETHLAIYEAEEL-------TCLKQWFPIS-SVPISQAT---FSCDC---------RMVFTSFVDGTLSIHEA 999 (1084)
Q Consensus 940 g~~la~~~d~~i~vwd~~~~-------~~~~~~~~~h-~~~v~~l~---fs~dg---------~~l~t~~~dg~i~vwd~ 999 (1084)
+.++++-.++.+.+...... +.+.....-| ...|+++. +.+.+ ..++.++.+|.|.+.-.
T Consensus 981 ~t~l~aD~~gNl~vl~~~~~~~~~~~~~~L~~~~~fhlG~~vt~~~~~sl~~~~~~~~~~~~~~~il~~T~~GsIg~l~p 1060 (1158)
T 3ei3_A 981 DNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLFHLGEFVNVFCHGSLVMQNLGETSTPTQGSVLFGTVNGMIGLVTS 1060 (1158)
T ss_dssp TEEEEEETTSEEEEEEECTTCCSTTGGGBEEEEEEEECSSCEEEEEECCSCCC-------CEEEEEEEEETTSCEEEEEE
T ss_pred CcEEEEcCCCcEEEEecCCCCCCccccceeeeEEEEeCCCcEeeEEeeeeecCCCccccccccceEEEEecCCEEEEEEE
Confidence 76666557788888876431 2222211112 45677765 23322 24677788998887643
No 253
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.77 E-value=1.1e-06 Score=90.13 Aligned_cols=200 Identities=13% Similarity=0.089 Sum_probs=138.5
Q ss_pred CccEEEecCCCCEEEEEe---CCeEEEEEcCCceeEEEEcCCC-CCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 796 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s---dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
....++|++|+.++++.+ ++.|+++|+.+++.+..+.-.. .....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 357899999876555544 4789999999999998876322 233456665 3456666667899999999999998
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCe
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 950 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 950 (1084)
.++..-... ...+++||+.|+.+..+++|.++|..+.+......+... +.. ...+..+.|. +|+..+.. .++.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p--~~~~nele~~-dg~lyvn~~~~~~ 173 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHR--VIRLNELEYI-NGEVWANIWQTDC 173 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEE--CCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-Ccc--cccceeEEEE-CCEEEEecCCCCe
Confidence 888532111 244667888887777789999999998665443222211 111 0135677888 77555544 5789
Q ss_pred EEEEEcCCcceeeEeecCC------------CCCEEEEEEccCCCEEE-EEeCCCcEEEEEcCCCc
Q 001403 951 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMVF-TSFVDGTLSIHEASNLE 1003 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l~-t~~~dg~i~vwd~~~~~ 1003 (1084)
|.+.|..+++.+..+..+- ......++|+|+++.|+ ++...+.+.+-++....
T Consensus 174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~ 239 (266)
T 2iwa_A 174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR 239 (266)
T ss_dssp EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence 9999999999888764320 13568999999987555 55567888888877653
No 254
>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
Probab=98.72 E-value=0.0026 Score=80.17 Aligned_cols=567 Identities=11% Similarity=0.092 Sum_probs=275.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCcc-----ccceeeeecccccEeEEEeecCC---CcEEEEEE---eCCCcE
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC---KQISVITC---GDDKTI 459 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~---~~l~l~s~---~~d~~i 459 (1084)
..++++-.+| +|..|+..|.=.+|.+..... +.....+ ..-++|.+++..... .. .++++ +.+|.+
T Consensus 329 ~ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~-~i~~~sG~g~~gsL 405 (1158)
T 3ei3_A 329 AECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQG-QLVTCSGAFKEGSL 405 (1158)
T ss_dssp CSEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCC-EEEEEECCGGGCEE
T ss_pred ccEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCC-eEEEEECcCCCCeE
Confidence 3567666655 788888877767777664321 1212222 234688888875421 21 23333 246788
Q ss_pred EEEECCCC-ceee--EeccCCCcEEEEeecc-cCCCcEEEEEecCCeEEEEECCCCCceEeecCC-----CCeEEEEEEc
Q 001403 460 KVWDAVTG-SRTY--SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-----GLGCTRMAYS 530 (1084)
Q Consensus 460 ~vwd~~~g-~~~~--~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~s 530 (1084)
++..-.=+ +.+. .+. .-..++.+.... +....+|+....+.+ +++.+... ........ ...+.+-.+
T Consensus 406 ~~lr~Gi~~~~~~~~~l~-gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l- 481 (1158)
T 3ei3_A 406 RIIRNGIGIHEHASIDLP-GIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV- 481 (1158)
T ss_dssp EEEEESBCEEEEEEECCC-SCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-
T ss_pred EEEecCCCEEEEEeecCC-CccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-
Confidence 88742211 1111 122 223455554321 123457777666655 45554321 22221111 111111111
Q ss_pred CCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEE--EE
Q 001403 531 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TI 608 (1084)
Q Consensus 531 ~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~ 608 (1084)
.+ ..++=.. ...|++.+...+..+..+.... +..|...+.+. .+++.++ .+.+.++.+..+++.. ..
T Consensus 482 ~~-~~ivQVt-----~~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~ 550 (1158)
T 3ei3_A 482 AH-QQLIQIT-----SASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHT 550 (1158)
T ss_dssp TT-TEEEEEE-----SSCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEE
T ss_pred CC-CeEEEEe-----cCEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeeccc
Confidence 22 2344333 2237777766555555554433 23566666543 4676665 6788888877664332 22
Q ss_pred cCCCCCCCcceEEEecC------CCEEEEEEC-CCeEEEEEcCCCCeeeeccccc-cceeEEEEcCCCceeeeeccCcee
Q 001403 609 DAGGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSV 680 (1084)
Q Consensus 609 ~~~~~~~~v~~v~~s~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~~p~~~~~~~~~~~~~~ 680 (1084)
.. ...|.|+++.|. +.++++|.. |++++|+++.+.+.+....-.. ....++.+..
T Consensus 551 ~l---~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~-------------- 613 (1158)
T 3ei3_A 551 EM---EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT-------------- 613 (1158)
T ss_dssp EC---SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE--------------
T ss_pred CC---CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE--------------
Confidence 22 235888888763 479999996 9999999998765543222111 1111121110
Q ss_pred EecCCCCCCCCccceecccCcccccccee--ecCccceeeccCCccccceEEEEEEecCCC-eEEEeecCCceEEeeccC
Q 001403 681 SVNEDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLMWRWPR 757 (1084)
Q Consensus 681 ~~~~~~s~~~~~l~~~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~-~l~~~~~dg~i~vw~~~~ 757 (1084)
+ ....++..|-.||.+..+.++. +.........+. ..++.=..+...|. .+++++.. -..+|.-.
T Consensus 614 -~-----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG----~~pv~L~~~~~~~~~~V~a~s~r-p~liy~~~- 681 (1158)
T 3ei3_A 614 -F-----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG----TQPTVLRTFRSLSTTNVFACSDR-PTVIYSSN- 681 (1158)
T ss_dssp -E-----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC----SSCCEEEEEESSSCEEEEEESSS-CEEEEESS-
T ss_pred -e-----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC----CCceEEEEEeeCCceeEEEECCC-CEEEEEcC-
Confidence 0 0123344454555443333221 111111111110 11222222222232 23333322 22222111
Q ss_pred CccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE-EecCC--CCEEEEEeCCeEEEEEcCCce--eEEEEc
Q 001403 758 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-ALSKN--DAYLFSASGGVISLYIVMTFK--TILTIM 832 (1084)
Q Consensus 758 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s~d--g~~l~~~sdg~i~vwd~~~~~--~~~~~~ 832 (1084)
+. +....+ ....+..+ .|+.. ..-++..+++.++|..+.+.. .++++.
T Consensus 682 ----------------------~~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip 734 (1158)
T 3ei3_A 682 ----------------------HK-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP 734 (1158)
T ss_dssp ----------------------SS-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE
T ss_pred ----------------------Cc-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe
Confidence 00 100001 11122222 23221 234555556668887775322 223332
Q ss_pred CCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------------------CeEEEE
Q 001403 833 PPSPTATSLAFNPHDNNVIAIGMDD-------------------------------------------------STILIY 863 (1084)
Q Consensus 833 ~~~~~i~~l~~s~~d~~~la~g~~d-------------------------------------------------g~i~iw 863 (1084)
-...+..++++| ..+.++++..+ +.|++.
T Consensus 735 -L~~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~li 812 (1158)
T 3ei3_A 735 -LYESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLII 812 (1158)
T ss_dssp -CSSEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEE
T ss_pred -CCCCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEE
Confidence 335677788888 55544433211 246777
Q ss_pred EcCCceeeeeecc-cccCEEEEE---EcCC-CCEEEEEe----------CCCcEEEEeCCCCceeeeeeeecCCCCccCC
Q 001403 864 NARSSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 928 (1084)
Q Consensus 864 d~~~~~~~~~l~~-h~~~V~~l~---~spd-~~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~ 928 (1084)
|-.+.+.+..++- ....+.+++ |..+ ..+++.|+ ..|.|.++++..++.+. +...+ ..
T Consensus 813 dp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~l---v~~~~----v~ 885 (1158)
T 3ei3_A 813 DQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQT---VAEKE----VK 885 (1158)
T ss_dssp ETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEE---EEEEE----ES
T ss_pred eCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEE---EEEEE----cC
Confidence 7777766544431 122344443 4333 47888776 34789999998543222 21111 11
Q ss_pred CCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcC--CCceeE
Q 001403 929 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS--NLEVQC 1006 (1084)
Q Consensus 929 ~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~--~~~~~~ 1006 (1084)
+.+++++-- +| +|+++-.++|++|++...+.+.. ...+-..|..+.....|.++++|..-..|.+...+ .+++.-
T Consensus 886 g~v~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~ 962 (1158)
T 3ei3_A 886 GAVYSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEE 962 (1158)
T ss_dssp SCEEEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEE
T ss_pred CcCEEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEE
Confidence 256666533 24 77778889999999986554331 11111123333333357788888877777775544 333331
Q ss_pred EeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1007 RILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1007 ~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
+. .. ....+..++.+- |...++.++.+|++.+.....
T Consensus 963 -~a-~D-------~~~~~vta~~~l--d~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 963 -IA-RD-------FNPNWMSAVEIL--DDDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp -EE-EC-------CSCBCEEEEEEE--ETTEEEEEETTSEEEEEEECT
T ss_pred -EE-ee-------cccccEEEEEEE--ccCcEEEEcCCCcEEEEecCC
Confidence 11 11 122344555554 246899999999999998855
No 255
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.71 E-value=7.6e-06 Score=95.88 Aligned_cols=167 Identities=9% Similarity=0.067 Sum_probs=108.0
Q ss_pred EEEEcCCCCcEEEEEeCC----------------CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEcCCCC--
Q 001403 840 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN-- 891 (1084)
Q Consensus 840 ~l~~s~~d~~~la~g~~d----------------g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~spd~~-- 891 (1084)
.+++.+ ....++.+..+ +.|..+|..+|+.+..++. |. .++. +...++|+
T Consensus 239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~ 316 (571)
T 2ad6_A 239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT 316 (571)
T ss_dssp CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence 356777 44566666532 3699999999998877653 21 2222 23335774
Q ss_pred -EEEEEeCCCcEEEEeCCCCceeeeeeeec-C---------CCCc-------------------cCC--CCceEEEEccC
Q 001403 892 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM-------------------TLA--PSETHIQFHKD 939 (1084)
Q Consensus 892 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~-------------------~~~--~~v~~~~~s~d 939 (1084)
.++.++.+|.+.++|..+|+..-...+.. . .+.. ... ..-..++++|+
T Consensus 317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~ 396 (571)
T 2ad6_A 317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence 67788899999999999987544322111 0 0000 000 00135788998
Q ss_pred CCEEEEE-e-------------------------------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccC
Q 001403 940 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD 981 (1084)
Q Consensus 940 g~~la~~-~-------------------------------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~d 981 (1084)
..++.+. . ++.|..||..+|+.+.+...+ ..+.+..+...
T Consensus 397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~ 474 (571)
T 2ad6_A 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence 8877763 2 367999999999988775432 22333333445
Q ss_pred CCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 982 CRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 982 g~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
+..+++++.||.|+.||..+|+.+.++..
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCEEEEEcCCCeEEEEECCCCCEEEEEeC
Confidence 66788899999999999999999988773
No 256
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=98.71 E-value=2.9e-06 Score=87.11 Aligned_cols=217 Identities=9% Similarity=-0.023 Sum_probs=143.5
Q ss_pred ceeEEEEcCCC--CCeEEEEEcCCCCcEEEEEeC--CCeEEEEEcCCceeeeeecccc-cCEEEEEEcCCCCEE-EEEeC
Q 001403 825 FKTILTIMPPS--PTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNIL-VSSGG 898 (1084)
Q Consensus 825 ~~~~~~~~~~~--~~i~~l~~s~~d~~~la~g~~--dg~i~iwd~~~~~~~~~l~~h~-~~V~~l~~spd~~~l-~s~s~ 898 (1084)
.+.+.++. |. .....++|++ ++.++++.+. ++.|+++|+.+++.+..+.-.. .....+++. ++.| ++.-.
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~ 84 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL 84 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence 34556664 33 3468999999 6755555443 5799999999999888764211 122345554 4444 44456
Q ss_pred CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcceeeEeecCC----CCCE
Q 001403 899 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS----SVPI 973 (1084)
Q Consensus 899 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~~~~~~~~h----~~~v 973 (1084)
++.+.++|..+.+.... +....+ . ...+++||+.+.++ .++.|.++|..+.+.+..+.-+. -..+
T Consensus 85 ~~~v~viD~~t~~v~~~--i~~g~~-~-------g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~ 154 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKN--FTHQMK-D-------GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRL 154 (266)
T ss_dssp CSEEEEEETTTTEEEEE--EECCSS-S-------CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred CCEEEEEECCCCcEEEE--EECCCC-C-------eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccc
Confidence 78999999998664442 221111 1 23466788877775 56789999999988877765432 1246
Q ss_pred EEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCC---CCcccceeeeEEEECCCCCCEEEEEeCCCcEEEE
Q 001403 974 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP---TTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1050 (1084)
Q Consensus 974 ~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw 1050 (1084)
..+.|. ||+..+....++.|.+-|..+++.+.++......+. ........+..++|+|+....++++...+.|++.
T Consensus 155 nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i 233 (266)
T 2iwa_A 155 NELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEI 233 (266)
T ss_dssp EEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEE
T ss_pred eeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEE
Confidence 788888 776555555678999999999999988874321100 0011123456799999644577778888999999
Q ss_pred cCCCCC
Q 001403 1051 EPNEPG 1056 (1084)
Q Consensus 1051 ~~~~~~ 1056 (1084)
++.+..
T Consensus 234 ~l~~~~ 239 (266)
T 2iwa_A 234 KLHLVR 239 (266)
T ss_dssp EEEECC
T ss_pred EEeccc
Confidence 986643
No 257
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.71 E-value=0.0021 Score=78.69 Aligned_cols=573 Identities=11% Similarity=0.047 Sum_probs=299.3
Q ss_pred CCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC
Q 001403 388 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG 467 (1084)
Q Consensus 388 ~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g 467 (1084)
...|.++.-..+|.+ -.|..+| +..||-..-+..... -......|.++.-..+|. |-.|+.+| +..+|..++
T Consensus 21 ~n~V~~I~qD~~G~l-WigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGLI-WIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSCE-EEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCCE-EEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 467999998888854 4556777 667773221111100 011234688888877765 44444444 889998876
Q ss_pred ceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe----ecCCCCeEEEEEEcCCCCEEEEEeeCC
Q 001403 468 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLGCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 468 ~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~----~~~~~~~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
+...........|.++.. . ++ .|..++.+ -+..+|..+...... .......|.++....+|...+.. .
T Consensus 93 ~f~~~~~~~~~~i~~i~~--~-~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~-- 164 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL--Q-GD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y-- 164 (758)
T ss_dssp EECCCSCCCCSCEEEEEE--E-TT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred EEECcccCCCceEEEEEe--c-CC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence 543211112334666643 2 33 45555655 567788765443221 01223468888888888876643 2
Q ss_pred CCCeeEEEecCCCceEeeeeeccc--cccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
. -+..++..+++......... .....|.++...+++..|..|+. +-+..+|..+++......... ..|.++.
T Consensus 165 --~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~~--~~i~~i~ 238 (758)
T 3ott_A 165 --N-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFHN--NSIKSLA 238 (758)
T ss_dssp --T-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEEE--EEEEEEE
T ss_pred --C-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCCC--CeEEEEE
Confidence 2 27888887765432211110 01234788888777776666664 468889988776533221111 1367777
Q ss_pred EecCCCEEEEEECCCeEEEEEcCCCCeeeecc-------ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccc
Q 001403 622 FNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI 694 (1084)
Q Consensus 622 ~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 694 (1084)
...+|.+.+ |+. +-+.+++..+........ .....|.++..... |...+
T Consensus 239 ~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~----------------------g~lWi 294 (758)
T 3ott_A 239 LDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQE----------------------HNIWL 294 (758)
T ss_dssp ECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTT----------------------CCEEE
T ss_pred EcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCC----------------------CCEEE
Confidence 777776555 444 457788876553221111 11223444444322 22221
Q ss_pred eecccCccccccceeecCccceee-ccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCe
Q 001403 695 SVEAENKSEVEKPLFARPSECQSL-LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR 773 (1084)
Q Consensus 695 ~~~~d~~i~~w~~~~~~~~~~~~~-~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~ 773 (1084)
|...| +.+.... ........ ..........|.++....+|...+. +.+| +..++-..+.. ..+.
T Consensus 295 -GT~~G-l~~~~~~--~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~G-l~~~~~~~~~~---------~~~~ 359 (758)
T 3ott_A 295 -GTDYG-ISLSRYN--SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANG-LIRFTDPAGER---------HDAI 359 (758)
T ss_dssp -EESSS-EEEECCC--C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTE-EEEESCTTSSC---------CCCE
T ss_pred -EeCCc-ccccccC--CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCc-ceeeccccccc---------ceeE
Confidence 11122 2111110 00000000 0001112346888888888875544 4455 33333221100 0011
Q ss_pred eecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEE--cC----CCCCeEEEEEcCCC
Q 001403 774 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFNPHD 847 (1084)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~--~~----~~~~i~~l~~s~~d 847 (1084)
.+...... ..-....|.++.-.++|...+.. ++.+..+|..+++...-. .. ....|.++...+ +
T Consensus 360 ~~~~~~~~--------~~l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~ 429 (758)
T 3ott_A 360 WYRMGDKT--------YPLSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-A 429 (758)
T ss_dssp EECTTCSS--------SCCSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-T
T ss_pred EeccCCcC--------CCCCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-C
Confidence 11110000 00123568888888888766654 668999999877654321 11 124578888877 5
Q ss_pred CcEEEEEeCCCeEEEEEcCCc------eee--eeec---c-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee
Q 001403 848 NNVIAIGMDDSTILIYNARSS------EVI--SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 915 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~------~~~--~~l~---~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~ 915 (1084)
+.+ -.|+..+-|.++|..+. ... ..+. + ....|.++...++|.+.+.++..+-|..+|..+++....
T Consensus 430 g~l-WigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~ 508 (758)
T 3ott_A 430 GQL-WISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKL 508 (758)
T ss_dssp SEE-EEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEE
T ss_pred CCE-EEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEe
Confidence 654 44776666888886531 111 1111 1 123589999999988776444445588899887653321
Q ss_pred eeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecC-CCCCEEEEEEccCCCEEEEEeCCCcE
Q 001403 916 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTL 994 (1084)
Q Consensus 916 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~i 994 (1084)
.. .... ....+.++....+|.+-+.+. +-+..++..+++...-...+ ....|.++... +|. |..++.+| +
T Consensus 509 ---~~-~~~~-~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~G-l 579 (758)
T 3ott_A 509 ---FA-DELT-GEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTNG-L 579 (758)
T ss_dssp ---CT-TTSC-GGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESSC-E
T ss_pred ---cC-CCcC-CCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCCC-e
Confidence 11 1100 012577888888998876654 56888887765432210111 13568888764 664 55555666 7
Q ss_pred EEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 995 SIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 995 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
..+|..+.+... +. ++.. .+. ...+... ...|..|+.+|- ..+++..
T Consensus 580 ~~~~~~~~~~~~-~~----~~~~----~~~--~~~~~~~-~G~l~fG~~~Gl-~~f~p~~ 626 (758)
T 3ott_A 580 WIIDRKTMDARQ-QN----MTNK----RFT--SLLFDPK-EDCVYLGGADGF-GISHSNL 626 (758)
T ss_dssp EEEETTTCCEEE-C------CCC----CCS--EEEEETT-TTEEEEECBSEE-EEEEC--
T ss_pred EEEcCCCceeEE-ec----CCCC----cee--eeEEECC-CCcEEEecCCce-EEEChhh
Confidence 778988776542 11 1111 122 1223322 357778888875 4556543
No 258
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=98.70 E-value=1.6e-05 Score=93.04 Aligned_cols=376 Identities=12% Similarity=0.035 Sum_probs=201.7
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeeEeccCCC-c---------E-EEEeecccCCCcEEEEEecCCeEEEEECCCCCceE
Q 001403 449 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGA-P---------V-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 515 (1084)
Q Consensus 449 ~l~s~~~-d~~i~vwd~-~~g~~~~~~~~h~~-~---------v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~ 515 (1084)
.++.++. ++.|.-+|. ++|+.+-++..... . + ..+++ .+..++.++.|+.+..+|..+++.+.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W 139 (571)
T 2ad6_A 64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW 139 (571)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence 3555666 788999999 89998866643221 0 0 11222 23578888899999999999998877
Q ss_pred eecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc-------------------
Q 001403 516 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ------------------- 569 (1084)
Q Consensus 516 ~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~------------------- 569 (1084)
....... .+.+ ... .++ .+++++... ..++.|+.+|..+|+.+..+......
T Consensus 140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~ 217 (571)
T 2ad6_A 140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF 217 (571)
T ss_dssp EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence 6544321 1111 111 134 455544211 01567999999999998776543200
Q ss_pred ---------------cC-ceEEEEEcCCCCEEEEEECC----------------CcEEEEECCCCeEEEEEcCCCCC---
Q 001403 570 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL--- 614 (1084)
Q Consensus 570 ---------------~~-~v~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~--- 614 (1084)
.. ....+++.++...++.+..+ +.|..+|..+|+.+..++...+.
T Consensus 218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d 297 (571)
T 2ad6_A 218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD 297 (571)
T ss_dssp SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence 00 00235667777777776642 35999999999999888653211
Q ss_pred -CCcce---EEEecCCC---EEEEEECCCeEEEEEcCCCCeeeeccccc--cceeEEEEcCCCceeeeeccCceeEecCC
Q 001403 615 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNED 685 (1084)
Q Consensus 615 -~~v~~---v~~s~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~~p~~~~~~~~~~~~~~~~~~~ 685 (1084)
..+.. +....+|+ .++.++.+|.+.++|..+++.+....... .....+..
T Consensus 298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~--------------------- 356 (571)
T 2ad6_A 298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL--------------------- 356 (571)
T ss_dssp CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence 01111 22224674 57778889999999999998776544221 01110000
Q ss_pred CCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcc
Q 001403 686 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE 765 (1084)
Q Consensus 686 ~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~ 765 (1084)
..+..+..... .. .+........|.......-..++++|+...+++...+....++..+..
T Consensus 357 --~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~------- 417 (571)
T 2ad6_A 357 --KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP------- 417 (571)
T ss_dssp --TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC-------
T ss_pred --cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc-------
Confidence 00000000000 00 000000111111001111135688999888888877644444322110
Q ss_pred cceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcC
Q 001403 766 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNP 845 (1084)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 845 (1084)
| ..+. . .-.....+..+|.+. ....+|.+..||+.+++.+.++.... .+....+..
T Consensus 418 ---------~--~~g~-~---------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t 473 (571)
T 2ad6_A 418 ---------Y--RAGQ-F---------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT 473 (571)
T ss_dssp ---------C--CTTS-C---------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE
T ss_pred ---------c--ccCC-c---------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE
Confidence 0 0000 0 000001122233221 00124789999999999887765322 222222233
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC-EEEEEEcCCCCEEEE
Q 001403 846 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS 895 (1084)
Q Consensus 846 ~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~-V~~l~~spd~~~l~s 895 (1084)
.+.++++++.||.|+.||..+|+.+.++...... -.-+.+..+|+.++.
T Consensus 474 -~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 474 -KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred -CCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3456777999999999999999999887643221 112345567765553
No 259
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.67 E-value=3.6e-05 Score=90.21 Aligned_cols=150 Identities=13% Similarity=0.102 Sum_probs=97.0
Q ss_pred CeEEEEEcCCceeeeeecc--cc--------cCEEEEEEc-CCCC---EEEEEeCCCcEEEEeCCCCceeeeeeeec-C-
Q 001403 858 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P- 921 (1084)
Q Consensus 858 g~i~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-pd~~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~- 921 (1084)
+.|.-+|..+|+.+..++. |. .++. +... .+|+ .++.++.+|.++++|..+|+..-...+.. .
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 6899999999999877643 32 1221 2222 4674 78889999999999999988653222111 0
Q ss_pred --------CCC--------c-----------------cCC--CCceEEEEccCCCEEEE-Ee------------------
Q 001403 922 --------DGV--------M-----------------TLA--PSETHIQFHKDQTRFLL-VH------------------ 947 (1084)
Q Consensus 922 --------~~~--------~-----------------~~~--~~v~~~~~s~dg~~la~-~~------------------ 947 (1084)
.+. . ... ..-..++++|+..++.+ ..
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 0 000 00124677887665554 21
Q ss_pred ---------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 948 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 948 ---------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
++.|.-||+.+|+.+.+...+. ++..-.....|.++++++.||.++.||.++|+.+.++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~--~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC--CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 4679999999999887654322 222222233466888899999999999999999988873
No 260
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=98.65 E-value=1.6e-05 Score=93.19 Aligned_cols=378 Identities=12% Similarity=0.067 Sum_probs=201.2
Q ss_pred EEEEeCCCcEEEEECCCCceeeEeccCCCcE---------EEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCC
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP 520 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v---------~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~ 520 (1084)
++.++.++.|.-+|.++|+.+-++....... ..+++ .+..++.++.|+.|..+|..+++.+......
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 4445543448889999999887665432210 11222 2347888899999999999999987765443
Q ss_pred CC----eEE-EEEEcC---CCC-EEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc--------------------
Q 001403 521 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------- 569 (1084)
Q Consensus 521 ~~----~i~-~~~~s~---d~~-~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~-------------------- 569 (1084)
.. .+. ...+.. +|+ .+++++... ..++.|+.+|..+|+.+-........
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 21 111 111111 244 455543211 12577999999999988765432100
Q ss_pred ------------------cCceEEEEEcCCCCEEEEEEC--------------------C----CcEEEEECCCCeEEEE
Q 001403 570 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT 607 (1084)
Q Consensus 570 ------------------~~~v~~~~~s~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 607 (1084)
...-..+++.|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 000123566777788887663 2 5899999999999988
Q ss_pred EcCCCCC----CCcc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCCeeeecccccc--ceeEEEEcCCCceeeee
Q 001403 608 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG 674 (1084)
Q Consensus 608 ~~~~~~~----~~v~-~v~~s---~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~ 674 (1084)
++...+. ..+. -+.+. .+|+ .++.++.+|.++++|..+++.+........ ....+ .+.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~--~~~------- 377 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHI--DLK------- 377 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEE--CTT-------
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccc--ccc-------
Confidence 8643221 0011 12222 4674 788889999999999999988766543221 11111 000
Q ss_pred ccCceeEecCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEee
Q 001403 675 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR 754 (1084)
Q Consensus 675 ~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~ 754 (1084)
.+.........+.. +. . .+ +........|.......-..++++|+...+++...+-...++.
T Consensus 378 --~g~p~~~~~~~~~~--~~-~-~~------------~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~ 439 (582)
T 1flg_A 378 --TGRPVEREGQRPPL--PE-P-GQ------------KHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT 439 (582)
T ss_dssp --TCCEEECTTCSCCC--CC-T-TC------------SSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred --CCCEeEccccCCcc--cc-c-cc------------cCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence 00000000000000 00 0 00 0000011111111111123568888887777776553333322
Q ss_pred ccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC
Q 001403 755 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 834 (1084)
Q Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~ 834 (1084)
.+. . ...| ....-..+...|++. ..+|.|..||+.+++.+.+....
T Consensus 440 ~~~----------------~--~~~g------------~~~~g~~~~~~p~~~----~~~G~l~A~D~~tG~~~W~~~~~ 485 (582)
T 1flg_A 440 EEV----------------S--YTKG------------SAYLGMGFRIKRMYD----DHVGSLRAMDPVSGKVVWEHKEH 485 (582)
T ss_dssp CCC----------------C--CCTT------------SCCCCEEEEEEESCS----SCSEEEEEECTTTCCEEEEEEES
T ss_pred ccc----------------c--ccCC------------CceeccceeecCCCC----CCcceEEEEECCCCCEEEEecCC
Confidence 110 0 0001 111111122223210 12588999999999988766533
Q ss_pred CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCCEEE
Q 001403 835 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV 894 (1084)
Q Consensus 835 ~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~~l~ 894 (1084)
.. +..-.+.. .+.++++|+.||.++.||.++|+.+.+++...+.+ .-+.+..||+..+
T Consensus 486 ~~-~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 486 LP-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp SC-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred CC-CcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 22 11111222 34577889999999999999999998887543321 1256667776444
No 261
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=98.62 E-value=2.6e-05 Score=91.09 Aligned_cols=380 Identities=10% Similarity=0.049 Sum_probs=199.9
Q ss_pred EEEEEeC-CCcEEEEEC-CCCceeeEeccCCCc-----------EEEEeecccCC--CcEEEEEecCCeEEEEECCCCCc
Q 001403 449 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKEN--IHFIFSISVDGKIKAWLYDSLGA 513 (1084)
Q Consensus 449 ~l~s~~~-d~~i~vwd~-~~g~~~~~~~~h~~~-----------v~~~~~~~~~~--~~~l~s~s~dg~i~iwd~~~~~~ 513 (1084)
.++.++. ++.|.-+|. ++|+.+-++...... ...+++.+..+ ...++.++.|+.+..+|..+++.
T Consensus 64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~ 143 (599)
T 1w6s_A 64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET 143 (599)
T ss_dssp EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence 3556666 788999999 899988666432210 11223321111 12378888999999999999988
Q ss_pred eEeecCCCC----eEEE-EEEcCCCCEEEEEeeCC--CCCeeEEEecCCCceEeeeeeccccc-----------------
Q 001403 514 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ----------------- 569 (1084)
Q Consensus 514 ~~~~~~~~~----~i~~-~~~s~d~~~l~~~~~~~--~~~~~i~~wd~~~~~~~~~~~~~~~~----------------- 569 (1084)
+........ .+.+ ..+ .++ .+++++... ..++.|+.+|..+|+.+-.+......
T Consensus 144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g 221 (599)
T 1w6s_A 144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG 221 (599)
T ss_dssp EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence 776544321 1111 111 144 444443211 02578999999999998776543200
Q ss_pred -----------------cCce-EEEEEcCCCCEEEEEECC----------------CcEEEEECCCCeEEEEEcCCCCCC
Q 001403 570 -----------------HNSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 570 -----------------~~~v-~~~~~s~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
...+ ...++.++...++.+..+ +.|..+|..+|+.+..++...+..
T Consensus 222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~ 301 (599)
T 1w6s_A 222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE 301 (599)
T ss_dssp CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence 0000 134566777888887765 379999999999998887543210
Q ss_pred ----Ccce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCCeeeecccccc--ceeEEEEcCCCceeeeeccCceeEe
Q 001403 616 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAGIANGSVSV 682 (1084)
Q Consensus 616 ----~v~~-v~~s---~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~~p~~~~~~~~~~~~~~~~ 682 (1084)
.... +.+. .+| ..++.++.+|.+.++|..+++.+........ ....+.. ..+....
T Consensus 302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~-----------~~g~p~~ 370 (599)
T 1w6s_A 302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDL-----------KTGQPVR 370 (599)
T ss_dssp SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT-----------TTCCEEE
T ss_pred ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCccccccccc-----------CCCceee
Confidence 0111 2222 467 5677788999999999999988765432110 0000000 0000000
Q ss_pred cCCCCCCCCccceecccCccccccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCc
Q 001403 683 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL 762 (1084)
Q Consensus 683 ~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~ 762 (1084)
.....+ .+.....+..|.......-..++++|+...+++...+....++.....
T Consensus 371 ~~~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~---- 424 (599)
T 1w6s_A 371 DPEYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP---- 424 (599)
T ss_dssp CGGGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC----
T ss_pred ccccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc----
Confidence 000000 000011111121111122235789999888887776633322110000
Q ss_pred CcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEE
Q 001403 763 STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 842 (1084)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 842 (1084)
...+. . .-..-..+..+|.+........|.+..||+.+++.+............ .
T Consensus 425 --------------~~~g~-~---------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g-~ 479 (599)
T 1w6s_A 425 --------------YKAGQ-F---------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGG-T 479 (599)
T ss_dssp --------------CCTTS-C---------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSB-C
T ss_pred --------------ccCCc-c---------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCc-c
Confidence 00000 0 000000011112110000002477899999999888776422111111 1
Q ss_pred EcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCE-EEEEEcCCCCEE
Q 001403 843 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL 893 (1084)
Q Consensus 843 ~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V-~~l~~spd~~~l 893 (1084)
+.. .+.++++++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus 480 ~~t-agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy 530 (599)
T 1w6s_A 480 MAT-AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY 530 (599)
T ss_dssp EEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred eEe-cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence 222 34577779999999999999999998876433211 224555677643
No 262
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.58 E-value=4.8e-06 Score=84.07 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=126.6
Q ss_pred CccEEEecCCCCEEEEEe-CC--eEEEEEcCCceeEEEEcCCCCC-eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceee
Q 001403 796 AVPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI 871 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg--~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~ 871 (1084)
-...+.|+ ++.++.+++ +| .|+++|+++++.+..+...... .-.+++. ++++.+..-.++.+.+||..+.+.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~ 120 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQV 120 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEE
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEE
Confidence 34788898 666555555 44 7999999999999888654322 2334543 3455555556899999999999999
Q ss_pred eeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCe
Q 001403 872 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH 950 (1084)
Q Consensus 872 ~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~ 950 (1084)
.++.... ....+++|++.|+.+..++.|.++|..+.+......+.. .+... ..+..+.|. +|+..|.. .++.
T Consensus 121 ~ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 121 RSFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCe
Confidence 8887422 223444678877776667889999999876554333321 11110 134457776 77665554 6789
Q ss_pred EEEEEcCCcceeeEeecCC-----------CCCEEEEEEccCCCEEEEEeCC
Q 001403 951 LAIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 951 i~vwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
|.+.|..+|+.+..+...- ..-...|+|+|+++.|++++..
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~ 245 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL 245 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence 9999999999887754321 2355789999998888877653
No 263
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.56 E-value=7.4e-06 Score=99.92 Aligned_cols=253 Identities=10% Similarity=-0.002 Sum_probs=138.0
Q ss_pred CceEEEEc-CCCceeeeecccccCccccccceEEEEEcCCc-cccceeeeecCCCCCeEEEEEcCCCCEEEEEeCC----
Q 001403 336 SPMSMDFH-PVQHTLLLGLWDVNSGQKLFIRNFKVWDIGAC-SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---- 409 (1084)
Q Consensus 336 ~V~~v~~s-pdg~~las~~~d~~sg~~~~~~~v~iwd~~~~-~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~d---- 409 (1084)
.+...+|| |||++||..... .|.. ..+|+++|+.++ ..... . +. .....++|||||+.|+....+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~--~G~~--~~~l~v~dl~~g~~~l~~-~-~~---~~~~~~~WspDg~~l~y~~~d~~~~ 245 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDM--SGNE--VYTIEFKRISDPSQTIAD-K-VS---GTNGEIVWGPDHTSLFYVTKDETLR 245 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEES--SSSS--CEEEEEEETTCTTCCCCC-C-EE---EECSCCEECSSTTEEEEEEECTTCC
T ss_pred EEeeeEecCCCCCEEEEEEeC--CCCc--eEEEEEEECCCCCEeCCc-c-cc---CceeeEEEecCCCEEEEEEECCCCC
Confidence 67889999 999999986543 2221 156999999987 52211 1 11 123468999999999888765
Q ss_pred -CEEEEEEccCCccccceeeee-cccccEeEEEeecCCCcEEEEEEe-CCCcEEEEECCCCc-ee--eEe-ccCCCcEEE
Q 001403 410 -HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--YSF-EGHGAPVYS 482 (1084)
Q Consensus 410 -g~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~-~d~~i~vwd~~~g~-~~--~~~-~~h~~~v~~ 482 (1084)
..|.++++.+++..... .+. .+......+.|||||+.+++.+.. ....|.++|+.++. .. ..+ ........+
T Consensus 246 ~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s 324 (751)
T 2xe4_A 246 ENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYD 324 (751)
T ss_dssp EEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEE
T ss_pred CCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEE
Confidence 35888888876432111 222 223346688999999963333322 24468889988762 22 333 334445555
Q ss_pred EeecccCCCcEEEEEecC--C--eEEEEECCCCCceEe-ecCCCC--eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC-
Q 001403 483 LCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLVEWNE- 554 (1084)
Q Consensus 483 ~~~~~~~~~~~l~s~s~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~- 554 (1084)
+.|+ .++.+++....+ + .|..+++.+...... +..+.. .+..+.+ ++..|+.... .++...|.++++
T Consensus 325 ~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~~g~~~l~~~dl~ 399 (751)
T 2xe4_A 325 VQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-RAGLTRIWTMMAD 399 (751)
T ss_dssp EEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-ETTEEEEEEEECC
T ss_pred Eeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-eCCEEEEEEEecc
Confidence 5442 133344444443 2 566667654222112 222222 4445554 4566665543 234667888886
Q ss_pred ------CCceEeeeeeccccccCceEEEEE----cCCCCEE-EEEECC---CcEEEEECCCCeEE
Q 001403 555 ------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQLL 605 (1084)
Q Consensus 555 ------~~~~~~~~~~~~~~~~~~v~~~~~----s~~~~~l-~~~~~d---g~i~iwd~~~~~~~ 605 (1084)
.+++....+.... ...+..+.+ ++++..+ ++.+.. ..++.+|+.+++..
T Consensus 400 ~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~ 462 (751)
T 2xe4_A 400 SQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT 462 (751)
T ss_dssp TTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred cccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence 4444123332111 012333322 3455544 443322 46778888777643
No 264
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.54 E-value=4.6e-06 Score=84.12 Aligned_cols=183 Identities=7% Similarity=0.053 Sum_probs=124.2
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCe--EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS 872 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~ 872 (1084)
-...+.|+. +.++.+.+ +|.|+++|+++++.+..+ -. ... -.+++. ++++.+....++.+.+||..+.+.+.
T Consensus 56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~ 130 (268)
T 3nok_A 56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER 130 (268)
T ss_dssp CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence 346788873 44444444 688999999999998887 22 233 335554 45566666678999999999999998
Q ss_pred eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeE
Q 001403 873 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL 951 (1084)
Q Consensus 873 ~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i 951 (1084)
++..- ..-. .+++|++.|+.+..++.|.++|..+.+......+....... ..+..+.|. +|+..|.. ..+.|
T Consensus 131 ti~~~-~eGw--GLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 131 TTRYS-GEGW--GLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEECS-SCCC--CEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEeCC-Ccee--EEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence 88742 2223 33467888887777899999999987755533332211111 134567776 77655554 57799
Q ss_pred EEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001403 952 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 952 ~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.+.|..+|+.+..+..+ -..-...|+++|+++.|++++.
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 99999999988775432 1235688999998766666553
No 265
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=98.52 E-value=7.2e-06 Score=82.81 Aligned_cols=185 Identities=13% Similarity=0.066 Sum_probs=128.3
Q ss_pred EeEEEeecCCCcEEEEEEeCCC--cEEEEECCCCceeeEeccCCCcE-EEEeecccCCCcEEEEEecCCeEEEEECCCCC
Q 001403 436 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG 512 (1084)
Q Consensus 436 V~~l~~s~d~~~l~l~s~~~d~--~i~vwd~~~g~~~~~~~~h~~~v-~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~ 512 (1084)
...+.|+ ++. +..+.+.+| .|+++|+++|+.+.++.-..... ..+++ .++ .+.+..-.++.+.+||.++.+
T Consensus 45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~-~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKD-KIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETT-EEEEEESSSSEEEEEETTTCC
T ss_pred cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCC-EEEEEEeeCCEEEEEECccCc
Confidence 4778898 664 666776665 89999999999998886433221 22444 322 444555568899999999999
Q ss_pred ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc--cccCceEEEEEcCCCCEEEEEEC
Q 001403 513 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 513 ~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~--~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
....+..... ...+++|++.|+... +.+.|.++|..+.+.+..+.... .....++.+.|. +|...+..-.
T Consensus 119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~ 190 (262)
T 3nol_A 119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ 190 (262)
T ss_dssp EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence 8887765442 234447788877763 35679999999999888876532 011234557776 6654444446
Q ss_pred CCcEEEEECCCCeEEEEEcCCCC----------CCCcceEEEecCCCEEEEEEC
Q 001403 591 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 591 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
++.|.+.|..+|+.+..+...+- ....+.+||+|+++.|.+.+.
T Consensus 191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 88999999999999999876421 123478999998887777765
No 266
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.51 E-value=7.1e-05 Score=81.14 Aligned_cols=239 Identities=11% Similarity=0.054 Sum_probs=145.9
Q ss_pred CccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEE-cC------------------CCCCeEEEEEcCCCCcEEEEEe
Q 001403 796 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-MP------------------PSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~-~~------------------~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
...+++++++|.++.++. ++.|..|+..+++...-. .. ....+..+++.+++++ |.++.
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d 98 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVD 98 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEE
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEE
Confidence 456789999998666655 688999998765433211 10 0135788999973454 55555
Q ss_pred CCCeEEEEEcCCceeeeeec----c-cccCEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCce
Q 001403 856 DDSTILIYNARSSEVISKLE----G-HSKRVTGLVFSD-ALNILVSSGG-----------------DAQIFVWDVDGWGI 912 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~~~~l~----~-h~~~V~~l~~sp-d~~~l~s~s~-----------------dg~I~iwd~~~~~~ 912 (1084)
..+.|..+|..+++. ..+. + .......+++.+ +|++.++... ++.|..||..+++.
T Consensus 99 ~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~ 177 (322)
T 2fp8_A 99 CYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKET 177 (322)
T ss_dssp TTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEE
Confidence 556688899876643 2221 1 123478899999 9987776533 36788888876553
Q ss_pred eeeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcc--eeeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 913 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
.. ...... ....++++|||++|.++ ..+.|.+|++.... ....+.. ..+ ...+++.++|.+.++.
T Consensus 178 ~~--~~~~~~-------~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G~l~va~ 246 (322)
T 2fp8_A 178 TL--LLKELH-------VPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADGHFWVSS 246 (322)
T ss_dssp EE--EEEEES-------CCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTSCEEEEE
T ss_pred EE--eccCCc-------cCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCCCEEEEe
Confidence 22 111111 34579999999977664 45789999987421 1111111 123 7889999999877766
Q ss_pred eC----------CCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 989 FV----------DGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 989 ~~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.. .+.|..+|.. |+.+..+....-.. . -.+.++++. ++.+.++....+.|.++++....
T Consensus 247 ~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~----~--~~~~~~~~~--~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 247 SEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA----G--EHFEQIQEH--DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp EEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT----T--SCCCEEEEE--TTEEEEECSSCSEEEEEEC----
T ss_pred cCcccccccCCCccEEEEECCC-CCEEEEEECCCCCc----c--ccceEEEEe--CCEEEEeecCCCceEEEeccccc
Confidence 44 4668888864 77666655221100 0 112234454 46666666678899999885443
No 267
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.45 E-value=7.2e-05 Score=80.35 Aligned_cols=229 Identities=13% Similarity=0.106 Sum_probs=139.2
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC-cEEEEECCC
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK-TIKVWDAVT 466 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~-~i~vwd~~~ 466 (1084)
.....++|+++|+++++-..++.|..||..++. .. .+ ........++++++|+ ++++... ++ .|..+|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~--~~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QI--HA-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EE--EE-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EE--EE-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 456789999999977776688899999987642 11 11 2234688999999998 4554433 32 477778788
Q ss_pred CceeeEecc-CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEe-e-------c--CCCCeEEEEEEcCCCCE
Q 001403 467 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR 535 (1084)
Q Consensus 467 g~~~~~~~~-h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~d~~~ 535 (1084)
|+....... .......++.. .++..+++...++.|..+|......... . . ..-.....+ ++|++.
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 875432221 12223444432 2334455544688888888765321111 0 0 111233445 889988
Q ss_pred EEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC
Q 001403 536 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 612 (1084)
Q Consensus 536 l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 612 (1084)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++.........
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~----~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~ 252 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ----TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ 252 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES----CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc----CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence 877653 356799999864 332 1111111 235668899999887777778899999975 65533222222
Q ss_pred CCCCcceEEEe---cCCCEEEEEECCC
Q 001403 613 GLPENPRICFN---KNGTLLAVIANEN 636 (1084)
Q Consensus 613 ~~~~v~~v~~s---~~~~~l~~~~~dg 636 (1084)
......+++|. |+++.|++++..+
T Consensus 253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~ 279 (306)
T 2p4o_A 253 GVIGSTAVAFGQTEGDCTAIYVVTNGG 279 (306)
T ss_dssp TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred ccCCceEEEEecccCCCCEEEEECCCC
Confidence 22346889998 8888877776543
No 268
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.44 E-value=9.4e-06 Score=97.61 Aligned_cols=288 Identities=9% Similarity=0.011 Sum_probs=162.0
Q ss_pred EEEEcC-CCceeeeecccccC-c-cccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeC-CCEEEE
Q 001403 339 SMDFHP-VQHTLLLGLWDVNS-G-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQL 414 (1084)
Q Consensus 339 ~v~~sp-dg~~las~~~d~~s-g-~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~-dg~v~i 414 (1084)
++++.| +|+.++.|.++... + .......+.+||..+........+...+.....++++.++|+.+++|+. +..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 667788 99999998766321 1 1111246899999876654333322334444556888999999999984 457999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEe-CC-----CcEEEEECCCCceeeEe----ccCCCcEEEEe
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTYSF----EGHGAPVYSLC 484 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~-~d-----~~i~vwd~~~g~~~~~~----~~h~~~v~~~~ 484 (1084)
||..+++-... ..+.... .-.+++..++|+ +++.|+ .+ ..+.+||..+++-...- ......-....
T Consensus 270 yd~~t~~W~~~-~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~ 345 (656)
T 1k3i_A 270 YDSSSDSWIPG-PDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGL 345 (656)
T ss_dssp EEGGGTEEEEC-CCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGG
T ss_pred ecCcCCceeEC-CCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccce
Confidence 99987643211 1111111 112455667888 777777 34 57999999887643220 00000000001
Q ss_pred ecccCCCcEEEEEecCC---------eEEEEECCCCCceEeecCC---------CCeEEEEEEc-CCCCEEEEEeeCCC-
Q 001403 485 PHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMAYS-ANGRRLFSCGTSKE- 544 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~~s-~d~~~l~~~~~~~~- 544 (1084)
+ ..++..++.++.+| .+..||..+..-....... ...-.++.|. .+++.++.++.+..
T Consensus 346 ~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~ 423 (656)
T 1k3i_A 346 Y--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQ 423 (656)
T ss_dssp G--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSS
T ss_pred e--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCC
Confidence 1 12334455555443 4677887765532221111 1112344443 36777777764221
Q ss_pred ---CCe---eEEEecCCCceEeeee--eccccccCceEEEEEcCCCCEEEEEECC-----------CcEEEEECCCCeEE
Q 001403 545 ---GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLL 605 (1084)
Q Consensus 545 ---~~~---~i~~wd~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~ 605 (1084)
... .+.+||..+....... .... ...-.+++..|+++.++.|+.+ ..+.+||..+.+..
T Consensus 424 ~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~ 501 (656)
T 1k3i_A 424 DSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFY 501 (656)
T ss_dssp SSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEE
T ss_pred CCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCcee
Confidence 011 6889998877654433 1111 1123345667899999998754 56899999887655
Q ss_pred EEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 606 TTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 606 ~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
..-..........+..+.|+|+.++.|+.
T Consensus 502 ~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 502 KQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp ECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred ecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 43222211112234556789999999885
No 269
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.43 E-value=5e-05 Score=76.05 Aligned_cols=187 Identities=10% Similarity=0.042 Sum_probs=126.2
Q ss_pred CCCccEEEecCCCCEEEEEe-C--CeEEEEEcCCceeEEEEcCCCC-CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCce
Q 001403 794 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSE 869 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s-d--g~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~ 869 (1084)
..-...+.|++ +.++.+.+ . +.|+.+|+.+++.+..+.-... .--.+++. ++++....-.++.+.+||..+.+
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~ 96 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT 96 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence 34456889986 45444444 3 4899999999999988764432 22344554 45566666678999999999999
Q ss_pred eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC
Q 001403 870 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE 948 (1084)
Q Consensus 870 ~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d 948 (1084)
.+.++.... .- ..+++|++.|..+..++.|.++|..+.+......+.. .+... ..+..+.+. +|+..|.. ..
T Consensus 97 ~~~ti~~~~-~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~-~g~~~--~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 97 PRARFRYPG-EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTA-GGRPL--DNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEEECSS-CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEEeCCC-Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEcc-CCccc--ccceeeEEe-CCEEEEEECCC
Confidence 998887432 22 3344677777777778899999999876544333322 11110 134556655 67665554 57
Q ss_pred CeEEEEEcCCcceeeEeecC------------CCCCEEEEEEccCCCEEEEEeC
Q 001403 949 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 949 ~~i~vwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
+.|.+.|..+|+.+..+..+ -..-...|+++|+++.|++++.
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 79999999999988775432 1235678999998877777664
No 270
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=98.42 E-value=4.4e-05 Score=82.76 Aligned_cols=240 Identities=10% Similarity=-0.011 Sum_probs=145.3
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee-----------------ecccccEeEEEeec-CCCcEEE
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI-----------------DAHVGNVNDLAFSA-PCKQISV 450 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l-----------------~~h~~~V~~l~~s~-d~~~l~l 450 (1084)
....+++|+++|+++.++..++.|..||..+++. ...... ......+..+++.+ ++. |
T Consensus 19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l 94 (322)
T 2fp8_A 19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L 94 (322)
T ss_dssp SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence 3456689999999888888889999999876542 111000 01123578899998 665 4
Q ss_pred EEEeCCCcEEEEECCCCceeeEecc-----CCCcEEEEeecccC-CCcEEEEEec-----------------CCeEEEEE
Q 001403 451 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL 507 (1084)
Q Consensus 451 ~s~~~d~~i~vwd~~~g~~~~~~~~-----h~~~v~~~~~~~~~-~~~~l~s~s~-----------------dg~i~iwd 507 (1084)
+.+...+.|..+|..++.. ..+.. .......+++ ++ +|.+.++... +|.|..||
T Consensus 95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~--d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d 171 (322)
T 2fp8_A 95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTV--DQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD 171 (322)
T ss_dssp EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEE--CTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEE--ecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence 4444445588899776543 22211 1124567777 44 5566665432 36688887
Q ss_pred CCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCce--EeeeeeccccccCceEEEEEcCCCCEE
Q 001403 508 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI 585 (1084)
Q Consensus 508 ~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l 585 (1084)
.++........ .......++++++|+.|+.+.. ..+.|..+++.... ....+.... + ...+++.++|+..
T Consensus 172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~ 243 (322)
T 2fp8_A 172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW 243 (322)
T ss_dssp TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence 76544322111 1123356899999997776643 24569999887421 111222122 3 6788999999877
Q ss_pred EEEEC----------CCcEEEEECCCCeEEEEEcCCCC--CCCcceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001403 586 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 586 ~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~ 645 (1084)
++... .+.|..+|. .++.+..+..... ...+..+++ .+++++++....+.|..+++..
T Consensus 244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 66544 467888887 4777777765432 234566666 4565555555678899888763
No 271
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=98.42 E-value=2.9e-05 Score=78.30 Aligned_cols=185 Identities=9% Similarity=0.088 Sum_probs=126.5
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
.-...+.|+ ++.++.+.+.+|.|+++|+++++.++.. +.. ........++++.++ +..-.++.+.++|.++.+
T Consensus 55 ~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~Ly-~ltw~~~~v~V~D~~Tl~ 127 (268)
T 3nok_A 55 AFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGERLY-QLTWTEGLLFTWSGMPPQ 127 (268)
T ss_dssp CCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSCEE-EEESSSCEEEEEETTTTE
T ss_pred cccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCEEE-EEEccCCEEEEEECCcCc
Confidence 445778887 4667777788889999999999887754 332 233322334555534 445568999999999999
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC--C---eEEEEEEcCCCCEEEEEeeCC
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--L---GCTRMAYSANGRRLFSCGTSK 543 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~--~---~i~~~~~s~d~~~l~~~~~~~ 543 (1084)
.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... . .+..+.|. +|+ |++...
T Consensus 128 ~~~ti~~~~eG-wGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw-- 198 (268)
T 3nok_A 128 RERTTRYSGEG-WGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGV-IYANIW-- 198 (268)
T ss_dssp EEEEEECSSCC-CCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE-EEEEET--
T ss_pred EEEEEeCCCce-eEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCE-EEEEEC--
Confidence 99988753222 34443 45677777778999999999888766654422 1 34566766 775 444332
Q ss_pred CCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEEC
Q 001403 544 EGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 544 ~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
....|.+.|..+|+.+..+.... ......+.++++|+++.|++.+.
T Consensus 199 -~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 -HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp -TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred -CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 25579999999999988876431 01246789999998877777664
No 272
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=98.41 E-value=9.4e-05 Score=79.40 Aligned_cols=231 Identities=12% Similarity=0.084 Sum_probs=138.2
Q ss_pred CCccEEEecCCCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-C-eEEEEEcCCceee
Q 001403 795 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-S-TILIYNARSSEVI 871 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-g-~i~iwd~~~~~~~ 871 (1084)
.....++++++|+++++-. ++.|..||.... ....+. .......+++++ +++++++.... + .|..++..+++..
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~-dG~l~vad~~~~~~~v~~~d~~~g~~~ 108 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 108 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcC-CCcEEEEeccCCcceEEEEcCCCCeEE
Confidence 4567899999998666653 688999998753 333332 335688999999 77766655432 2 5777787777653
Q ss_pred eeec-ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeee---ee--cCCCCccCCCCceEEEEccCCCEEEE
Q 001403 872 SKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ--TPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 872 ~~l~-~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~--~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
.... ........++..+++..+++-..++.|.++|..++....... +. ...+.. .....+ ++|++.|.+
T Consensus 109 ~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~---~~pngi--s~dg~~lyv 183 (306)
T 2p4o_A 109 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVF---PAANGL--KRFGNFLYV 183 (306)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCS---CSEEEE--EEETTEEEE
T ss_pred EEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCC---CcCCCc--CcCCCEEEE
Confidence 2221 112233456666666556655568889899887642111000 00 001111 123444 899987777
Q ss_pred E--eCCeEEEEEcCC-cce--eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcc
Q 001403 946 V--HETHLAIYEAEE-LTC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~-~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1020 (1084)
+ ..+.|..+++.. ++. ...+.. ......++++++|+++++....+.|.+++.. |+....... . .+
T Consensus 184 ~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~-~-~~----- 253 (306)
T 2p4o_A 184 SNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQA-E-QG----- 253 (306)
T ss_dssp EETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECG-G-GT-----
T ss_pred EeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeec-c-cc-----
Confidence 5 467899999874 332 111111 1345678999999887777778899999975 655321110 0 11
Q ss_pred cceeeeEEEEC---CCCCCEEEEEeCCC
Q 001403 1021 LHVYPHAIAAH---PLKPTQFAVGLTNG 1045 (1084)
Q Consensus 1021 ~~v~~~~~~~~---p~d~~~l~~~~~dg 1045 (1084)
.-.+.+++|. | |+..|.+++..+
T Consensus 254 -~~~p~~~a~~g~~~-d~~~LyVt~~~~ 279 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEG-DCTAIYVVTNGG 279 (306)
T ss_dssp -CTTEEEEEECCSTT-TTTEEEEEECTT
T ss_pred -cCCceEEEEecccC-CCCEEEEECCCC
Confidence 1236778898 6 566666665543
No 273
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=98.35 E-value=8.7e-05 Score=74.34 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=125.0
Q ss_pred CCCCeEEEEEcCCCCEEEEEeCC--CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEEC
Q 001403 387 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA 464 (1084)
Q Consensus 387 h~~~V~~v~fspdg~~las~~~d--g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~ 464 (1084)
...-...+.|++ +.++.+.+.+ ..|+++|+.+++.++.. .+.. .........+++. +.+..-.++.+.++|.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~---~~fgeGi~~~~~~-ly~ltw~~~~v~v~D~ 92 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPP---PYFGAGIVAWRDR-LIQLTWRNHEGFVYDL 92 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCT---TCCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCC---CcceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence 345677899987 5566666654 48999999999876643 2222 2222333334554 3444556899999999
Q ss_pred CCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCC-----CeEEEEEEcCCCCEEEEE
Q 001403 465 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 465 ~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~d~~~l~~~ 539 (1084)
++.+.+.++...... ..++. ++..|+.+..++.|.++|..+.+....+.... ..+..+.+. +|+..+..
T Consensus 93 ~tl~~~~ti~~~~~G-wglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv 166 (243)
T 3mbr_X 93 ATLTPRARFRYPGEG-WALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV 166 (243)
T ss_dssp TTTEEEEEEECSSCC-CEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred CcCcEEEEEeCCCCc-eEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence 999999998753332 34443 44556666668899999999888766654422 234455554 66544433
Q ss_pred eeCCCCCeeEEEecCCCceEeeeeeccc----------cccCceEEEEEcCCCCEEEEEEC
Q 001403 540 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD 590 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~~~~~~~~~~~~~----------~~~~~v~~~~~s~~~~~l~~~~~ 590 (1084)
-. ...|.+.|..+|+.+..+.... ......+.++++|+++.|++.+.
T Consensus 167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 22 4569999999999988876432 11246789999999888888774
No 274
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=98.34 E-value=6.2e-05 Score=90.48 Aligned_cols=120 Identities=12% Similarity=0.181 Sum_probs=76.0
Q ss_pred EEEEcC-CCCEEEEEeeCCC-------CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEE
Q 001403 526 RMAYSA-NGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI 596 (1084)
Q Consensus 526 ~~~~s~-d~~~l~~~~~~~~-------~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~i 596 (1084)
..++.+ +++.++.++.+.+ +...+.+||..+++..........+.....++++.++++.+++|+ .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456667 8888888775432 123689999988765332221110112334567788999999988 4568999
Q ss_pred EECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEE-CC-----CeEEEEEcCCC
Q 001403 597 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPES 646 (1084)
Q Consensus 597 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~-~d-----g~i~iwd~~~~ 646 (1084)
||..+.+....-...... .-.+++..+++++++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~R-~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVAR-GYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSCC-SSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCccc-cccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 999988765543322221 123566667999999988 33 45777877655
No 275
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.33 E-value=0.00099 Score=72.61 Aligned_cols=248 Identities=10% Similarity=-0.021 Sum_probs=150.4
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQ 413 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~ 413 (1084)
+...|.+..+++.++++. ...|+..++....... +.. ....+..++|++.+..|... ...+.|.
T Consensus 34 d~~~C~~~~~~~~ll~~~-----------~~~I~~i~~~g~~~~~---~~~-~~~~~~~l~~d~~~~~ly~~D~~~~~I~ 98 (349)
T 3v64_C 34 DRRSCKALGPEPVLLFAN-----------RIDIRQVLPHRSEYTL---LLN-NLENAIALDFHHRRELVFWSDVTLDRIL 98 (349)
T ss_dssp TSSCEEESSSCCEEEEEC-----------BSCEEEECTTSCCEEE---EEC-SCSCEEEEEEETTTTEEEEEETTTTEEE
T ss_pred CCCcccccccCceeEeec-----------ccceEEEeCCCCeeEE---eec-CCCceEEEEEeccccEEEEEeccCCceE
Confidence 456677777755444442 1456666665432221 122 23458899999876666655 4567899
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcE
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 493 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~ 493 (1084)
.++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. ++.+
T Consensus 99 r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~-~g~l 173 (349)
T 3v64_C 99 RANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-EGTI 173 (349)
T ss_dssp EEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETT-TTEE
T ss_pred EEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecC-cCeE
Confidence 99998764221 12222234578999986664 4455556788999997654433333334456788888653 3445
Q ss_pred EEEEecC-CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc
Q 001403 494 IFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 572 (1084)
Q Consensus 494 l~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~ 572 (1084)
+++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.... ..
T Consensus 174 y~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~~~~---~~ 247 (349)
T 3v64_C 174 YWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGL---PH 247 (349)
T ss_dssp EEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSSC---SS
T ss_pred EEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEeCCC---CC
Confidence 5555555 78888888765444333333446789999998888887753 35679999876543332232222 45
Q ss_pred eEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 573 VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 573 v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
...+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 248 P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 248 PFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred ceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 667777 334444444566778888866666555554
No 276
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.31 E-value=0.0013 Score=70.60 Aligned_cols=238 Identities=9% Similarity=-0.045 Sum_probs=143.6
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC---CceeeE-eccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTYS-FEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~---g~~~~~-~~~h~ 477 (1084)
+|+.+..+ .|+..|+.+.+... +-........++|++++.. ++++-...+.|..+++.+ +..... +...-
T Consensus 3 ~ll~~~~~-~I~~i~~~~~~~~~----~~~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 76 (316)
T 1ijq_A 3 YLFFTNRH-EVRKMTLDRSEYTS----LIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 76 (316)
T ss_dssp EEEEECBS-SEEEEETTSCCCEE----EECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred EEEEECCC-eEEEEECCCcceEe----hhcCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence 34444443 48888988765332 2223446789999987764 455555678999999876 222222 32222
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+... ..+.|...++..
T Consensus 77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG- 152 (316)
T 1ijq_A 77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG- 152 (316)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence 34567777432 34555666778899999987654443344344567899999987777665431 125688888753
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.....+.... ......+++++++..|+.+. ..+.|..+|+....................+++. .+..+++-...+
T Consensus 153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~ 229 (316)
T 1ijq_A 153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 229 (316)
T ss_dssp CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence 3333332111 24678999999887777665 5678999998754333332222222234577775 355555555678
Q ss_pred eEEEEEcCCCCeeeec
Q 001403 637 RIKILETPESNSVDAA 652 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~ 652 (1084)
.|..++..+++....+
T Consensus 230 ~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 230 AIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTCCCCEEE
T ss_pred eEEEEeCCCCcceEEE
Confidence 8999988777555444
No 277
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}
Probab=98.31 E-value=0.00095 Score=72.76 Aligned_cols=249 Identities=10% Similarity=-0.042 Sum_probs=152.1
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCc
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS 468 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~ 468 (1084)
+..+|.+..+++ +|+.+.. ..|+..++.+.... .+......+..++|++.+.. ++++-...+.|..+++..+.
T Consensus 34 d~~~C~~~~~~~-~ll~~~~-~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~ 106 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFANR-IDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSN 106 (349)
T ss_dssp TSSCEEESSSCC-EEEEECB-SCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCS
T ss_pred CCCcccccccCc-eeEeecc-cceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCC
Confidence 344566666633 4444433 34777787765322 12223345789999987664 44555567889999987665
Q ss_pred eeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCee
Q 001403 469 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 548 (1084)
Q Consensus 469 ~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~ 548 (1084)
....+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+...... .+.
T Consensus 107 ~~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~ 183 (349)
T 3v64_C 107 VEEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPR 183 (349)
T ss_dssp CEEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCE
T ss_pred ceEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCE
Confidence 43333322334466777432 345566666778999999886554444444445678999999877777664311 267
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCC
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT 627 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~ 627 (1084)
|...++............ ......++++|++..|+.+. ..+.|..+|+........+... ......+++. ++.
T Consensus 184 I~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav~-~~~ 257 (349)
T 3v64_C 184 IEASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITVF-EDS 257 (349)
T ss_dssp EEEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEE-TTE
T ss_pred EEEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEEE-CCE
Confidence 888887643322222211 24578999998877777654 5678999998754433333322 2234677773 455
Q ss_pred EEEEEECCCeEEEEEcCCCCeeeecc
Q 001403 628 LLAVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 628 ~l~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
.+++-...+.|..++..+++....+.
T Consensus 258 ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 258 LYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp EEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEEecCCCCeEEEEEccCCCccEEec
Confidence 55555567888888866665555443
No 278
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.29 E-value=0.0012 Score=71.41 Aligned_cols=235 Identities=9% Similarity=0.031 Sum_probs=131.9
Q ss_pred CCCccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEc---CCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee
Q 001403 794 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 870 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~ 870 (1084)
...+.++++++ +..++++..+.|.. ..+.|+.-.... .....+..+++.+ ++.+++++. +|.|.. ..+.|+.
T Consensus 79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~-~g~v~~-S~DgG~t 153 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMITN-VGAIYR-TKDSGKN 153 (327)
T ss_dssp CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEET-TCCEEE-ESSTTSS
T ss_pred CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEeC-CccEEE-EcCCCCC
Confidence 44678889986 55566666664433 333343333322 2334577888877 676766554 554432 1222322
Q ss_pred ee-eecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCC
Q 001403 871 IS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 949 (1084)
Q Consensus 871 ~~-~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~ 949 (1084)
-. ...++...+..+++.|++.+++.+...+..+-+|-.... ...+... . ...+..+++++++..++++.++
T Consensus 154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~t---W~~~~~~--~---~~~~~~~~~~~~g~~~~~~~~G 225 (327)
T 2xbg_A 154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTA---WEPHNRT--T---SRRLHNMGFTPDGRLWMIVNGG 225 (327)
T ss_dssp EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSS---CEEEECC--S---SSCEEEEEECTTSCEEEEETTT
T ss_pred CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCc---eeECCCC--C---CCccceeEECCCCCEEEEeCCc
Confidence 11 122455678999999998888766443333334421111 1112111 1 1257889999999988888888
Q ss_pred eEEEEEcCCcceeeEeecC---CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeee
Q 001403 950 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPH 1026 (1084)
Q Consensus 950 ~i~vwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1026 (1084)
.+++.+...|+.-.....+ +...+.++++.+++..++++ .+|.| .+..+.|+--..+......+ ..++
T Consensus 226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~-----~~~~-- 296 (327)
T 2xbg_A 226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVP-----SNFY-- 296 (327)
T ss_dssp EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSS-----SCCC--
T ss_pred eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCC-----CCeE--
Confidence 8887753334433222211 23468899999988877765 57777 45556564332222111111 1244
Q ss_pred EEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1027 AIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1027 ~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
++.|.+ +..+++++.+|.|.-++-
T Consensus 297 ~v~~~~--~~~~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 297 KILFFS--PDQGFILGQKGILLRYVT 320 (327)
T ss_dssp EEEEEE--TTEEEEECSTTEEEEECC
T ss_pred EEEEEC--CCceEEEcCCceEEEEcC
Confidence 355553 456888889998777653
No 279
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=0.00022 Score=80.23 Aligned_cols=247 Identities=12% Similarity=0.034 Sum_probs=143.6
Q ss_pred CCccEEEecC-CCCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeC-CC----eEEEEEcCC
Q 001403 795 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS 867 (1084)
Q Consensus 795 ~~v~~l~~s~-dg~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~-dg----~i~iwd~~~ 867 (1084)
.....++++| ++..|.++. .+.|+.+|+.+++...... .......++|++ ++++|+++.. ++ .+.+++. .
T Consensus 137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~ 213 (430)
T 3tc9_A 137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E 213 (430)
T ss_dssp SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence 3567899998 455666665 4789999998766544433 556688999999 7875555554 22 3444443 3
Q ss_pred ceee--eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEE
Q 001403 868 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 944 (1084)
Q Consensus 868 ~~~~--~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 944 (1084)
+... ..+. .......++++| +|.++++-..++.|..++..++.... ....... .....++|+|+|++|.
T Consensus 214 g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly 285 (430)
T 3tc9_A 214 SGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY 285 (430)
T ss_dssp GTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred Cceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence 3222 2222 123456789999 77777776678899999998754321 1111111 1467899999999666
Q ss_pred EE--eCCeEEEEEcCC--cce--eeEeec--C---C---------CCCEE-EEEEc--------cCCCEEEEEeCCCcEE
Q 001403 945 LV--HETHLAIYEAEE--LTC--LKQWFP--I---S---------SVPIS-QATFS--------CDCRMVFTSFVDGTLS 995 (1084)
Q Consensus 945 ~~--~d~~i~vwd~~~--~~~--~~~~~~--~---h---------~~~v~-~l~fs--------~dg~~l~t~~~dg~i~ 995 (1084)
++ ..+.|..++... ++. +..+.. + . -.... .++.. ++|.++++-...+.|+
T Consensus 286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 64 567898887652 221 111111 0 0 01122 45553 3466666656678899
Q ss_pred EEEcCCCceeEEecccc--ccC--CC-C--cccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 996 IHEASNLEVQCRILSTA--YLR--PT-T--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 996 vwd~~~~~~~~~~~~~~--~~~--~~-~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
.++ .+|.+........ ... .+ . ...--.|..++++|+++.++++-...+.|+.+++.
T Consensus 366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 988 4565543332100 000 00 0 00112578899998545555555556778887764
No 280
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.28 E-value=0.00065 Score=75.27 Aligned_cols=247 Identities=11% Similarity=-0.035 Sum_probs=151.7
Q ss_pred eEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCcee
Q 001403 391 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 470 (1084)
Q Consensus 391 V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~ 470 (1084)
-.|.+..++ .+|+.+.. ..|+..++.++.... +.........++|.+.+.. ++++-...+.|..+++..+...
T Consensus 79 ~~C~~~~~~-~~l~~~~~-~~I~~i~~~~~~~~~----~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~ 151 (386)
T 3v65_B 79 RSCKALGPE-PVLLFANR-IDIRQVLPHRSEYTL----LLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVE 151 (386)
T ss_dssp SCEEECSSC-CEEEEECB-SCEEEECTTSCCCEE----EECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEE
T ss_pred CeECCcccc-ceeEeecC-ccceeeccCCCcEEE----EecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcE
Confidence 345555553 34444443 458888887654322 2223345789999987664 4555556788999998766543
Q ss_pred eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEE
Q 001403 471 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 550 (1084)
Q Consensus 471 ~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~ 550 (1084)
..+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+..... ..+.|.
T Consensus 152 ~~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~ 228 (386)
T 3v65_B 152 EVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIE 228 (386)
T ss_dssp EEECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEE
T ss_pred EEEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEE
Confidence 333322233456676432 34555666667889888887655444444444567899999988877766431 136788
Q ss_pred EecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEE
Q 001403 551 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 629 (1084)
Q Consensus 551 ~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l 629 (1084)
.+++............- .....++++|++..|+.+. ..+.|..+|+........+... ......+++ .++.++
T Consensus 229 r~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly 302 (386)
T 3v65_B 229 ASSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLY 302 (386)
T ss_dssp EEETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEE
T ss_pred EEeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEE
Confidence 88876443322222222 4578999998877776654 5678999998754443333322 223467777 345555
Q ss_pred EEEECCCeEEEEEcCCCCeeeecc
Q 001403 630 AVIANENRIKILETPESNSVDAAG 653 (1084)
Q Consensus 630 ~~~~~dg~i~iwd~~~~~~~~~~~ 653 (1084)
++-...+.|..++..+++....+.
T Consensus 303 ~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 303 WTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEETTTTEEEEEETTTCCSCEEEE
T ss_pred EeeCCCCeEEEEECCCCcceEEEc
Confidence 565567888888876776555554
No 281
>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}
Probab=98.26 E-value=0.00013 Score=88.88 Aligned_cols=200 Identities=7% Similarity=-0.027 Sum_probs=114.5
Q ss_pred CCCC-CeEEEEEc-CCCCEEEEEeC-C----CEEEEEEccCC-ccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-
Q 001403 386 DPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD- 456 (1084)
Q Consensus 386 ~h~~-~V~~v~fs-pdg~~las~~~-d----g~v~iwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d- 456 (1084)
+|.- .+...+|| |||++||.+.. + .+|+++|+.++ +.+.. .+. .....++|+|||+. |+....|
T Consensus 170 ~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d~ 242 (751)
T 2xe4_A 170 GKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKDE 242 (751)
T ss_dssp TCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEECT
T ss_pred CCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEECC
Confidence 4443 68889999 99999997643 2 35999999998 63321 121 12457899999985 4433333
Q ss_pred ----CcEEEEECCCCcee--eEec-cCCCcEEEEeecccCCCcEEEEEecC---CeEEEEECCCCCc-e--Eee-cCCCC
Q 001403 457 ----KTIKVWDAVTGSRT--YSFE-GHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA-R--VDY-DAPGL 522 (1084)
Q Consensus 457 ----~~i~vwd~~~g~~~--~~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d---g~i~iwd~~~~~~-~--~~~-~~~~~ 522 (1084)
..|.++++.++... ..+. ........+.| ++||++|+..+.+ ..|.++|+++... . ..+ .....
T Consensus 243 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 243 TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCC
Confidence 36888898877532 2222 22334556677 5577777765533 3578888876531 2 222 22333
Q ss_pred eEEEEEEcCCCCEEEEEeeCC-CCCeeEEEecCCCc-eEee-eeeccccccCceEEEEEcCCCCEE-EEEECCCc--EEE
Q 001403 523 GCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKR-TYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI 596 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~-~~~~~i~~wd~~~~-~~~~-~~~~~~~~~~~v~~~~~s~~~~~l-~~~~~dg~--i~i 596 (1084)
...++.|+ +|+.|+..+... .+...|..+|+.++ +... .+.... ...+..+.+. ++.| ++...++. |++
T Consensus 321 ~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~--~~~l~~~~~~--~~~lv~~~~~~g~~~l~~ 395 (751)
T 2xe4_A 321 VRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSE--DVFMESIAVR--SNYLVVAGRRAGLTRIWT 395 (751)
T ss_dssp CCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCS--SEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred ceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCC--CcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence 44444443 366666665432 34667888888753 3222 222211 1234555554 4454 45666775 445
Q ss_pred EEC
Q 001403 597 WDM 599 (1084)
Q Consensus 597 wd~ 599 (1084)
+++
T Consensus 396 ~dl 398 (751)
T 2xe4_A 396 MMA 398 (751)
T ss_dssp EEC
T ss_pred Eec
Confidence 564
No 282
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}
Probab=98.25 E-value=0.00094 Score=74.00 Aligned_cols=247 Identities=10% Similarity=-0.030 Sum_probs=151.0
Q ss_pred CceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEE
Q 001403 336 SPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQL 414 (1084)
Q Consensus 336 ~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~i 414 (1084)
.-.|.+..+++.++++. ...|+..++........ .. ....+..++|++.+..|... ...+.|..
T Consensus 78 ~~~C~~~~~~~~l~~~~-----------~~~I~~i~~~~~~~~~~---~~-~~~~~~gl~~d~~~~~ly~~D~~~~~I~r 142 (386)
T 3v65_B 78 RRSCKALGPEPVLLFAN-----------RIDIRQVLPHRSEYTLL---LN-NLENAIALDFHHRRELVFWSDVTLDRILR 142 (386)
T ss_dssp SSCEEECSSCCEEEEEC-----------BSCEEEECTTSCCCEEE---EC-SCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCeECCccccceeEeec-----------CccceeeccCCCcEEEE---ec-CCCccEEEEEecCCCeEEEEeCCCCcEEE
Confidence 44566666655444442 15567777665432211 22 33568899999866666555 45678999
Q ss_pred EEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEE
Q 001403 415 YAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 494 (1084)
Q Consensus 415 wd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l 494 (1084)
++++++.... .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.+. ++.++
T Consensus 143 ~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~-~g~ly 217 (386)
T 3v65_B 143 ANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPM-EGTIY 217 (386)
T ss_dssp EETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETT-TTEEE
T ss_pred EecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcC-CCeEE
Confidence 9988764211 12222234567899986664 4455555778999887654433333333456788888653 33444
Q ss_pred EEEecC-CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCce
Q 001403 495 FSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 573 (1084)
Q Consensus 495 ~s~s~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v 573 (1084)
++-... +.|...+++.................++++|++..|+.+-. +.+.|..+|+........+.... ...
T Consensus 218 ~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P 291 (386)
T 3v65_B 218 WTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQGL---PHP 291 (386)
T ss_dssp EEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSSC---SSE
T ss_pred EeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECCC---CCc
Confidence 554444 78888888765544444444456789999998888887753 35679999986543332332222 456
Q ss_pred EEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEc
Q 001403 574 SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 574 ~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 609 (1084)
..+++ ..+..+++-...+.|..++..+|+....+.
T Consensus 292 ~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 292 FAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 77777 344455555567888888877776666654
No 283
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.25 E-value=0.00088 Score=68.21 Aligned_cols=218 Identities=14% Similarity=0.144 Sum_probs=133.9
Q ss_pred EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 830 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 830 ~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
.+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -....-.+++.+++.++++.-.++.+.++++.
T Consensus 21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~ 99 (255)
T 3qqz_A 21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT 99 (255)
T ss_dssp ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence 4555667899999999556677778889999999998 887777631 12457889999999877776677889999987
Q ss_pred CCce-eeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeC-CeEEEEEcC---CcceeeEee------cCCCCCEEEEE
Q 001403 909 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE-THLAIYEAE---ELTCLKQWF------PISSVPISQAT 977 (1084)
Q Consensus 909 ~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-~~i~vwd~~---~~~~~~~~~------~~h~~~v~~l~ 977 (1084)
.... ..........+..........++++|++..|.++.+ ....||.+. ....+.... ..+...+.+++
T Consensus 100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~ 179 (255)
T 3qqz_A 100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE 179 (255)
T ss_dssp TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence 6442 111122211111112235789999999977777533 333444443 111111110 11244678999
Q ss_pred EccC-CCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 978 FSCD-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 978 fs~d-g~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
|.|. |++++.......+.++|.. |+.+..+....-.. +.....-.+--|+|+| +|++.++ +..+.++++..
T Consensus 180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~-~l~~~~~qpEGia~d~-~G~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSR-GLSHNIKQAEGVAMDA-SGNIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGG-GCSSCCCSEEEEEECT-TCCEEEE-ETTTEEEEEEC
T ss_pred EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccC-CcccccCCCCeeEECC-CCCEEEE-cCCceEEEEEe
Confidence 9984 5667777777889999977 55655554221000 0001123456789999 5775555 66665555543
No 284
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=98.24 E-value=0.00027 Score=79.53 Aligned_cols=248 Identities=11% Similarity=0.022 Sum_probs=145.3
Q ss_pred CccEEEecCC--CCEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC---C-eEEEEEcCCc
Q 001403 796 AVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARSS 868 (1084)
Q Consensus 796 ~v~~l~~s~d--g~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d---g-~i~iwd~~~~ 868 (1084)
....++++|+ +..|..+. .+.|+.+|..+++.... .........+++++ +++++++-... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 4668999984 44455554 48899999987766544 33556689999999 77754444321 1 2333333222
Q ss_pred eee-eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 869 EVI-SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 869 ~~~-~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
... ..+. .-.....+++.| +|.+.++-..++.|+.+|..++..... ....... .....++|+|+|++|.++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~~-----~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDTK-----GSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSCC-----SSCEEEEECTTSSEEEEE
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCCC-----CCcccEEEeCCCCEEEEE
Confidence 110 1111 223456688999 777776666778899999987654111 1111111 123479999999966664
Q ss_pred --eCCeEEEEEcC--Cccee--eEeec--C------------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEE
Q 001403 947 --HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSIH 997 (1084)
Q Consensus 947 --~d~~i~vwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~t~~~dg~i~vw 997 (1084)
..+.|+.++.. ++... ..+.. + .-.....++| .++|.++++-...+.|+.+
T Consensus 291 d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~ 370 (433)
T 4hw6_A 291 YNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVL 370 (433)
T ss_dssp ETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEE
T ss_pred eCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEE
Confidence 45789998765 33211 11111 0 0123567999 7778777777777889999
Q ss_pred EcCCCceeEEeccccccCCCC-c------ccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCC
Q 001403 998 EASNLEVQCRILSTAYLRPTT-S------CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1053 (1084)
Q Consensus 998 d~~~~~~~~~~~~~~~~~~~~-~------~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~ 1053 (1084)
+. +|.+............+. . ..--+|..++++|.+|.++++=...+.|+.+++.
T Consensus 371 ~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 371 TP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 85 565443322111000000 0 0113477899995456666666667788888764
No 285
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=98.22 E-value=0.0021 Score=71.47 Aligned_cols=240 Identities=10% Similarity=-0.027 Sum_probs=149.3
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~ 477 (1084)
+|+.+. ...|+..++.+.... .+......+..++|++.+.. ++++-...+.|..+++... .....+....
T Consensus 85 ~ll~~~-~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~ 158 (400)
T 3p5b_L 85 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 158 (400)
T ss_dssp EEEEEE-TTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred eeEEec-cceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence 444443 456888888875432 22334556889999987664 4445555788999998652 2223333334
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....+++.+. ++.+.++-...+.|.+.+++.......+.........+++.|.+..|+..... ....|...++...
T Consensus 159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~ 235 (400)
T 3p5b_L 159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 235 (400)
T ss_dssp SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence 55677887543 34566666677899999888665555554445567899999987777765421 1356888887644
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN 636 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg 636 (1084)
.........- .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus 236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~ 311 (400)
T 3p5b_L 236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE 311 (400)
T ss_dssp SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence 3332222222 4678999999888887765 5678999998765444444332223334566663 344555555668
Q ss_pred eEEEEEcCCCCeeeeccc
Q 001403 637 RIKILETPESNSVDAAGV 654 (1084)
Q Consensus 637 ~i~iwd~~~~~~~~~~~~ 654 (1084)
.|..++..+++.+..+..
T Consensus 312 ~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 312 AIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SEEEEESSSCCCCEEEEC
T ss_pred eEEEEEcCCCCceEEEec
Confidence 888888777766655543
No 286
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=98.18 E-value=0.0037 Score=67.39 Aligned_cols=280 Identities=10% Similarity=0.020 Sum_probs=148.6
Q ss_pred CCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeee--cCCCCCeEEEEEcCCCCEEEEEeCCCEE
Q 001403 335 SSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV--RDPGVSVNRVVWSPDGSLLGVAYSKHIV 412 (1084)
Q Consensus 335 ~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~--~~h~~~V~~v~fspdg~~las~~~dg~v 412 (1084)
..+.+|.|.+++..+|+|. + +.| |....+....+.... ......+.++.|++ +..++ ++..+.|
T Consensus 36 ~~~~~v~~~~~~~~~~~G~-~---------g~i--~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~~~~-~g~~g~i 101 (327)
T 2xbg_A 36 ATILDMSFIDRHHGWLVGV-N---------ATL--METRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NEGWI-VGEPPIM 101 (327)
T ss_dssp SCEEEEEESSSSCEEEEET-T---------TEE--EEESSTTSSCEECCCCCSCCCCEEEEEEEET-TEEEE-EEETTEE
T ss_pred CcEEEEEECCCCcEEEEcC-C---------CeE--EEeCCCCCCCeECCCCCCCCCccEEEEEecC-CeEEE-EECCCeE
Confidence 3789999998888888752 1 333 333332222221111 12345788999986 44444 4556644
Q ss_pred EEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecccCCC
Q 001403 413 QLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI 491 (1084)
Q Consensus 413 ~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~~~~~ 491 (1084)
.. ..+.|+.-........+.+.+..+.+.+++. +++.+ .++.|.. ....|+.=. ....+...+..+.+.+ ++
T Consensus 102 ~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~--~~ 174 (327)
T 2xbg_A 102 LH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP--SG 174 (327)
T ss_dssp EE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT--TS
T ss_pred EE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC--CC
Confidence 32 4444554332211112345577888887776 45544 4565433 223343222 2234556788888854 55
Q ss_pred cEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecc-cccc
Q 001403 492 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL-QLQH 570 (1084)
Q Consensus 492 ~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~-~~~~ 570 (1084)
.+++.+...+..+-+|-....-..........+..+++.++++.++.+. .+.+++.+...|+.-..+... ....
T Consensus 175 ~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~~~~~~~~ 249 (327)
T 2xbg_A 175 EYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELLSPLRRNS 249 (327)
T ss_dssp CEEEEETTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCBCTTSSCC
T ss_pred cEEEEECCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEeccCCcccCC
Confidence 5665554433333333211111111223345788899999998776553 344666532324333322211 0011
Q ss_pred CceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCC-CCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 571 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 571 ~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
..+..+.+.+++..++++ .+|.| .+..+.|+.-..+... .....+..+.|.+++. +++++.+|.|.-++-
T Consensus 250 ~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 250 VGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred cceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 358889998877665554 46766 4555556555544422 1123478898986554 666667887776653
No 287
>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1
Probab=98.17 E-value=0.0018 Score=69.58 Aligned_cols=206 Identities=8% Similarity=0.018 Sum_probs=129.9
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCC---ceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMT---FKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~---~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..++|++++..|..++ .+.|..+++.+ +.... .+...-.....+++.+.++++.++-...+.|.++++..
T Consensus 29 ~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g 108 (316)
T 1ijq_A 29 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 108 (316)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCC
Confidence 34567899999877777766 58899999876 12222 23323345678999873555666666788999999875
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeCC--CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~d--g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+.........+++.|++..|..+... +.|...+++...... .... . . .....+++++++..|..
T Consensus 109 ~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~--~~~~--~-~---~~P~gla~d~~~~~lY~ 180 (316)
T 1ijq_A 109 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYW 180 (316)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS--S-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE--EEEC--C-C---CCceEEEEeccCCEEEE
Confidence 43332233234567899999976666555443 678888887533211 1111 1 1 14679999998887777
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+ ..+.|..+|+.. .....+... .......+++. .+..+++-...+.|..++..+|+....+.
T Consensus 181 ~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 181 VDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 5 456899999874 333333321 23446778874 45566666677889999988777655443
No 288
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=98.04 E-value=0.062 Score=65.60 Aligned_cols=566 Identities=10% Similarity=0.035 Sum_probs=285.4
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEE
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ 413 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~ 413 (1084)
...|.++.-..+|.+-+.. .+ | +..||-.+-.. +... .......|.++....+| .|-.|+.+| +.
T Consensus 21 ~n~V~~I~qD~~G~lWigT-~~---------G-L~ryDG~~~~~-~~~~-~~~~~~~i~~i~~d~~g-~lWigT~~G-l~ 85 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIWIGS-NK---------G-LFSYDGYSTQQ-HFTY-GENNNTRIYCGVIIDNT-YLYMGTDNG-IL 85 (758)
T ss_dssp CCCEEEEEECTTSCEEEEE-SS---------C-EEEECSSCEEE-CSCT-TSTTSSCEEEEEEETTT-EEEEEETTE-EE
T ss_pred cceEEEEEECCCCCEEEEE-CC---------C-ccccCCCceEE-EEcc-CCCCCceEEEEEEcCCC-cEEEEeCCC-eE
Confidence 3478888888888654431 12 2 33444321110 0000 01123578888887776 455566666 88
Q ss_pred EEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceeeEec-----cCCCcEEEEeeccc
Q 001403 414 LYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPVYSLCPHAK 488 (1084)
Q Consensus 414 iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~-----~h~~~v~~~~~~~~ 488 (1084)
.||..+.+... ........|.++.. .+|. +..++.+ -+..+|..+++.. .+. .....|.++.. +
T Consensus 86 ~yd~~~~~f~~---~~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~--d 154 (758)
T 3ott_A 86 VYNYRADRYEQ---PETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIR--T 154 (758)
T ss_dssp EEETTTTEECC---CSCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCEEEEEE--C
T ss_pred EEeCCCCEEEC---cccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeEEEEEE--c
Confidence 99988754221 11112235777654 3554 3334444 6888998776543 231 12345777765 4
Q ss_pred CCCcEEEEEecCCeEEEEECCCCCceEe-ecC----CCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeee
Q 001403 489 ENIHFIFSISVDGKIKAWLYDSLGARVD-YDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 563 (1084)
Q Consensus 489 ~~~~~l~s~s~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~ 563 (1084)
.++.+.+ ++.+| +..++......... ... ....|.++...+++..|..++. +-+..+|..+++.....
T Consensus 155 ~~g~lWi-gt~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-----~Gl~~~~~~~~~~~~~~ 227 (758)
T 3ott_A 155 KDNQIYV-GTYNG-LCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-----GYLFQYFPSTGQIKQTE 227 (758)
T ss_dssp TTCCEEE-EETTE-EEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-----EEEEEEETTTTEEEEEE
T ss_pred CCCCEEE-EeCCC-HhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-----CCCeEEcCCCCeEEecc
Confidence 4554444 45444 66677655432211 111 1224788888887776555542 23888998877653322
Q ss_pred eccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC-----CCCCcceEEEecCCCEEEEEECCCeE
Q 001403 564 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLAVIANENRI 638 (1084)
Q Consensus 564 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~~~~l~~~~~dg~i 638 (1084)
... ...|.++....++...+ |+. +-+.+++..+++......... ....|.++....+|.+. +|+..| +
T Consensus 228 ~l~---~~~i~~i~~d~~g~lWi-gT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iGT~~G-l 300 (758)
T 3ott_A 228 AFH---NNSIKSLALDGNGDLLA-GTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LGTDYG-I 300 (758)
T ss_dssp EEE---EEEEEEEEECTTCCEEE-EET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EEESSS-E
T ss_pred CCC---CCeEEEEEEcCCCCEEE-EeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EEeCCc-c
Confidence 111 24588888877776554 454 458889887765433221111 11236777777777644 455556 4
Q ss_pred EEEEcCCCCeeeecc-----ccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCccccccceeecCc
Q 001403 639 KILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS 713 (1084)
Q Consensus 639 ~iwd~~~~~~~~~~~-----~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~w~~~~~~~~ 713 (1084)
.++.....-...... .....|.++.....+ .+.+. ..+| +..++.......
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g----------------------~lWiG-t~~G-l~~~~~~~~~~~ 356 (758)
T 3ott_A 301 SLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKG----------------------FYWFG-GANG-LIRFTDPAGERH 356 (758)
T ss_dssp EEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTC----------------------CEEEE-ETTE-EEEESCTTSSCC
T ss_pred cccccCCceeEEecccCCCCCCCceEEEEEEcCCC----------------------CEEEe-eCCc-ceeecccccccc
Confidence 444322111110000 011234444433222 22221 1222 222221110000
Q ss_pred cceeecc---CCccccceEEEEEEecCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcC
Q 001403 714 ECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 790 (1084)
Q Consensus 714 ~~~~~~~---~~~~~~~~i~~l~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1084)
....... +.......|.++....+|...+ ++ ++-+..|+...+.. ..+...... .
T Consensus 357 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt-~~GL~~~~~~~~~~------------~~~~~~~~~--------~ 414 (758)
T 3ott_A 357 DAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-AT-DGSINRYDYATRQF------------IHYNIVDNT--------G 414 (758)
T ss_dssp CCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EE-TTEEEEEETTTTEE------------EEEEEECCC---------
T ss_pred eeEEeccCCcCCCCCCCceEEEEECCCCCEEE-Ee-CCcHhhcCcCCCcE------------EEeecCCCc--------C
Confidence 0000000 0011234688888888887544 44 34566666433211 111100000 0
Q ss_pred CCCCCCccEEEecCCCCEEEEEeCCeEEEEEcCCc-----eeE---EEEc---C-CCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 791 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 791 ~~~~~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
......|.++...++|.+.+....+.+.++|..+. ... ..+. + ....|.++...+ ++.+.+.++..+
T Consensus 415 ~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~lWi~~~t~~ 493 (758)
T 3ott_A 415 TYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNVWVLLYNNK 493 (758)
T ss_dssp -CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCEEEEETTCS
T ss_pred CCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCEEEEccCCC
Confidence 00234578888888887666555667888886531 111 1221 1 223588999988 777776444445
Q ss_pred eEEEEEcCCceeeeeecc---cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEE
Q 001403 859 TILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 935 (1084)
Q Consensus 859 ~i~iwd~~~~~~~~~l~~---h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 935 (1084)
-|..+|..+++....... ....+.++....+|.+.+. +..| +..++..++..... . ..+.. ...|.++.
T Consensus 494 Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~--~~~i~~i~ 565 (758)
T 3ott_A 494 GIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS--NNEILSMT 565 (758)
T ss_dssp SEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC-----CCEEEEE
T ss_pred CcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--ccceEEEE
Confidence 588899887764432211 1346888888888877764 4555 88888776543221 1 11111 13577777
Q ss_pred EccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEEcC
Q 001403 936 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 936 ~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~dg~i~vwd~~ 1000 (1084)
.. +|.+.+++ ++-|..+|..+.+...--. ....+....+. +||. |+.|+.+|.+. ++..
T Consensus 566 ~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~G~-l~fG~~~Gl~~-f~p~ 625 (758)
T 3ott_A 566 CV-KNSIWVST-TNGLWIIDRKTMDARQQNM--TNKRFTSLLFDPKEDC-VYLGGADGFGI-SHSN 625 (758)
T ss_dssp EE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSEEEE-EEC-
T ss_pred EC-CCCEEEEC-CCCeEEEcCCCceeEEecC--CCCceeeeEEECCCCc-EEEecCCceEE-EChh
Confidence 64 66555544 5558888988765432111 12233344443 4664 55577888554 4443
No 289
>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}
Probab=98.02 E-value=0.0024 Score=64.95 Aligned_cols=205 Identities=11% Similarity=0.070 Sum_probs=131.4
Q ss_pred ecCCCCCeEEEEEcCCCCEEE-EEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE
Q 001403 384 VRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW 462 (1084)
Q Consensus 384 ~~~h~~~V~~v~fspdg~~la-s~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw 462 (1084)
+.|-...+..++|+|++..|. +...++.|...|.. ++.++.. .+.+. .....+++.+++. ++++.-.++.+.++
T Consensus 22 l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i-~l~g~-~D~EGIa~~~~g~--~~vs~E~~~~l~~~ 96 (255)
T 3qqz_A 22 IAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTI-PLDFV-KDLETIEYIGDNQ--FVISDERDYAIYVI 96 (255)
T ss_dssp CTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEE-ECSSC-SSEEEEEECSTTE--EEEEETTTTEEEEE
T ss_pred CCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEE-ecCCC-CChHHeEEeCCCE--EEEEECCCCcEEEE
Confidence 556667899999999876555 56778889999988 6655533 23332 4577889988887 66666567889998
Q ss_pred ECCCCce---eeEec------cCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC---CCceEee-------cCCCCe
Q 001403 463 DAVTGSR---TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---LGARVDY-------DAPGLG 523 (1084)
Q Consensus 463 d~~~g~~---~~~~~------~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~---~~~~~~~-------~~~~~~ 523 (1084)
++..... +.... ........+++.+ .++.|+++.......+|.++. ....... ......
T Consensus 97 ~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~--~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d 174 (255)
T 3qqz_A 97 SLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSR--QDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDD 174 (255)
T ss_dssp EECTTCCEEEEEEEECCCSSCCCSSCCEEEEEET--TTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSC
T ss_pred EcCCCCeeeeeeeeccccccccccCCcceEEEeC--CCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCC
Confidence 8765442 22221 1234568899965 445666666665556665541 1111111 112335
Q ss_pred EEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeecccc------ccCceEEEEEcCCCCEEEEEECCCcEEEE
Q 001403 524 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIW 597 (1084)
Q Consensus 524 i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~------~~~~v~~~~~s~~~~~l~~~~~dg~i~iw 597 (1084)
+.++++.|....+++.+. ....+..+|.. |+.+..+.-... .......++|.++|+ ++..++...++++
T Consensus 175 ~S~l~~dp~tg~lliLS~---~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f 249 (255)
T 3qqz_A 175 VSGAEFNQQKNTLLVLSH---ESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRF 249 (255)
T ss_dssp CCEEEEETTTTEEEEEET---TTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEE
T ss_pred ceeEEEcCCCCeEEEEEC---CCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEE
Confidence 689999998887777763 36678999966 556655543320 013678999999997 5555777777777
Q ss_pred ECC
Q 001403 598 DMN 600 (1084)
Q Consensus 598 d~~ 600 (1084)
...
T Consensus 250 ~~~ 252 (255)
T 3qqz_A 250 TPQ 252 (255)
T ss_dssp EC-
T ss_pred Eec
Confidence 643
No 290
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L
Probab=97.99 E-value=0.008 Score=66.74 Aligned_cols=206 Identities=8% Similarity=0.008 Sum_probs=133.2
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..++|++.+..|..++ .+.|..+++... .....+.........+++.+.++++.++-...+.|.+.+++.
T Consensus 111 ~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g 190 (400)
T 3p5b_L 111 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 190 (400)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTT
T ss_pred cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCC
Confidence 45678899999877777776 588999988752 233333334456788999874555666666778999999886
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+...-.....|++.|.+.+|..+.. .+.|...+++...... .+.. + . .....+++++++..|..
T Consensus 191 ~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~--~~~~--~-l---~~P~glavd~~~~~lY~ 262 (400)
T 3p5b_L 191 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYW 262 (400)
T ss_dssp CSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEE--EECS--S-C---SCEEEEEEETTTTEEEE
T ss_pred CceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEE--EEEC--C-C---CceEEEEEEeCCCEEEE
Confidence 5443333333445789999997666665543 3678888887643221 1111 1 1 14678999998888877
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
+ ..+.|..+|+.... ...+... ......++++ ..+..+++-...+.|..+|..+|+....+.
T Consensus 263 aD~~~~~I~~~d~dG~~-~~~~~~~~~~l~~P~gl~v-~~~~lywtd~~~~~V~~~~~~~G~~~~~i~ 328 (400)
T 3p5b_L 263 VDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAV-FEDKVFWTDIINEAIFSANRLTGSDVNLLA 328 (400)
T ss_dssp EETTTTEEEEEETTSCC-CEEEEECSSTTSSEEEEEE-ETTEEEEEESSSCSEEEEESSSCCCCEEEE
T ss_pred EECCCCEEEEEeCCCCc-cEEEEeCCCCCCCCEEEEE-eCCEEEEecCCCCeEEEEEcCCCCceEEEe
Confidence 5 45689999986433 3333322 2344567777 334556666677889999988886655544
No 291
>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}
Probab=97.96 E-value=0.0011 Score=74.49 Aligned_cols=242 Identities=10% Similarity=0.130 Sum_probs=137.3
Q ss_pred CeEEEEEcC-CCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-CC----cEEEEE
Q 001403 390 SVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DK----TIKVWD 463 (1084)
Q Consensus 390 ~V~~v~fsp-dg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-d~----~i~vwd 463 (1084)
....++|+| ++..|.++...+.|+.+|++++... .+.........++|+++|+. |+.+.. ++ .+.+.+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~----~~~~~~~~P~~ia~d~~G~~--lyvad~~~~~~~~~v~~~~ 211 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVS----TVYSGLSKVRTICWTHEADS--MIITNDQNNNDRPNNYILT 211 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEE----EEECCCSCEEEEEECTTSSE--EEEEECCSCTTSEEEEEEE
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEE----EEecCCCCcceEEEeCCCCE--EEEEeCCCCcccceEEEEe
Confidence 567899998 4666666665578999999876432 22234456889999999984 444332 22 233344
Q ss_pred CCCCcee--eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeec-CCCCeEEEEEEcCCCCEEEEEe
Q 001403 464 AVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCG 540 (1084)
Q Consensus 464 ~~~g~~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~d~~~l~~~~ 540 (1084)
..+... ..+.. ......+++++. ++.++++-..++.|..++.+......... ........++|+|+|++|+.+.
T Consensus 212 -~~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 212 -RESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp -GGGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred -CCCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEE
Confidence 333322 22221 222445666442 55666666678899999987654422222 2223567899999999777664
Q ss_pred eCCCCCeeEEEecCCC--ceE--eeeeecc------c------cccCceE-EEEEc--------CCCCEEEEEECCCcEE
Q 001403 541 TSKEGESFLVEWNESE--GAI--KRTYQGL------Q------LQHNSVS-VVHFD--------TAKDQILAAGDDHVIK 595 (1084)
Q Consensus 541 ~~~~~~~~i~~wd~~~--~~~--~~~~~~~------~------~~~~~v~-~~~~s--------~~~~~l~~~~~dg~i~ 595 (1084)
. ....|..++... +.. ...+.+. . ..-.... .++.. +++..+++-...+.|+
T Consensus 289 ~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~ 365 (430)
T 3tc9_A 289 V---NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR 365 (430)
T ss_dssp T---TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred C---CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence 3 256688876542 322 1222221 0 0001223 45553 3455555555677888
Q ss_pred EEECCCCeEEEEEcC---------CC------CCCCcceEEEecC-CCEEEEEECCCeEEEEEcC
Q 001403 596 IWDMNKVQLLTTIDA---------GG------GLPENPRICFNKN-GTLLAVIANENRIKILETP 644 (1084)
Q Consensus 596 iwd~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-~~~l~~~~~dg~i~iwd~~ 644 (1084)
.++. +|........ .+ .......++++|+ +.++++-..++.|+.++.+
T Consensus 366 ~i~~-~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 366 ILTP-QGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp EECT-TSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EECC-CCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 8884 5654443321 00 0123568999995 5555554456778877654
No 292
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.95 E-value=0.011 Score=63.23 Aligned_cols=233 Identities=8% Similarity=-0.031 Sum_probs=142.2
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCCceee-EeccCCCcEEEEeecc
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHA 487 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~-~~~~h~~~v~~~~~~~ 487 (1084)
...|+..++++...... .+......+..++|.+.+.. ++.+-...+.|..+++..+.... .+...-.....+++.+
T Consensus 12 ~~~I~~i~l~~~~~~~~--~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 12 RRDLRLVDATNGKENAT--IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEEETTCTTSCCE--EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEET
T ss_pred cCeEEEEECCCCceEEE--EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEc
Confidence 45689999987641111 12222345678999987664 45555567889999987664221 2222223445677743
Q ss_pred cCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccc
Q 001403 488 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ 567 (1084)
Q Consensus 488 ~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~ 567 (1084)
. ++.++++-...+.|.+++++.................+++.|.+..|+..... ....|...++.... ...+....
T Consensus 89 ~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~-~~~~~~~~ 164 (318)
T 3sov_A 89 L-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSS-RFIIINSE 164 (318)
T ss_dssp T-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCS-CEEEECSS
T ss_pred C-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCC-eEEEEECC
Confidence 2 34566666677899999987655444444444567899999987777665421 14568888876432 22221111
Q ss_pred cccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001403 568 LQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 646 (1084)
Q Consensus 568 ~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~ 646 (1084)
......+++++++..|+.+. ..+.|..+|+........... .......+++.. +..+.+-...+.|..++..++
T Consensus 165 --l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 165 --IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp --CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred --CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 14578999999877777664 567899999875443333321 222345677753 345555556788999998777
Q ss_pred Ceeeecc
Q 001403 647 NSVDAAG 653 (1084)
Q Consensus 647 ~~~~~~~ 653 (1084)
+....+.
T Consensus 240 ~~~~~i~ 246 (318)
T 3sov_A 240 EGLREIH 246 (318)
T ss_dssp CSCEEEE
T ss_pred CceEEEe
Confidence 6554443
No 293
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=97.91 E-value=0.0023 Score=71.78 Aligned_cols=244 Identities=11% Similarity=0.133 Sum_probs=138.6
Q ss_pred CCeEEEEEcCC--CCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC---Cc-EEEE
Q 001403 389 VSVNRVVWSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD---KT-IKVW 462 (1084)
Q Consensus 389 ~~V~~v~fspd--g~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d---~~-i~vw 462 (1084)
.....++|+|+ +..|..+...+.|+.+|..++... .+.........++|+++|+ ++++.... .. +...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~----~~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVD----IKTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEE----EECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEE----EeecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 35678999995 445555544478999999877533 2333445688999999999 55554321 12 3333
Q ss_pred ECCCCcee-eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCc-eEeec-CCCCeEEEEEEcCCCCEEEEE
Q 001403 463 DAVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYD-APGLGCTRMAYSANGRRLFSC 539 (1084)
Q Consensus 463 d~~~g~~~-~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~-~~~~~-~~~~~i~~~~~s~d~~~l~~~ 539 (1084)
+...+... ..+. .......+++.+. ++.+.++-..++.|+.++.+++.. ..... ........++|+|+|++|+.+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 32222110 1111 1223345666432 455666666778899998876554 22211 122233479999999977776
Q ss_pred eeCCCCCeeEEEecCC--CceEe--eeeeccc------------cccCceEEEEE---------cCCCCEEEEEECCCcE
Q 001403 540 GTSKEGESFLVEWNES--EGAIK--RTYQGLQ------------LQHNSVSVVHF---------DTAKDQILAAGDDHVI 594 (1084)
Q Consensus 540 ~~~~~~~~~i~~wd~~--~~~~~--~~~~~~~------------~~~~~v~~~~~---------s~~~~~l~~~~~dg~i 594 (1084)
.. +...|+.++.. ++... ..+.+.. ..-.....+++ .+++..+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 53 35678887654 33221 1222210 01134677888 6777666666677889
Q ss_pred EEEECCCCeEEEEEcCCC---------------CCCCcceEEEe-cCCCEEEEEECCCeEEEEEcC
Q 001403 595 KIWDMNKVQLLTTIDAGG---------------GLPENPRICFN-KNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 595 ~iwd~~~~~~~~~~~~~~---------------~~~~v~~v~~s-~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+.++. +|.......... .......++++ ++|.++++=..++.|+.++++
T Consensus 368 ~~~~~-~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 565443332110 01224578888 566555555556778777654
No 294
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.85 E-value=0.012 Score=70.85 Aligned_cols=237 Identities=10% Similarity=-0.031 Sum_probs=144.6
Q ss_pred EEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCCC----ceeeEeccCC
Q 001403 402 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG 477 (1084)
Q Consensus 402 ~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~g----~~~~~~~~h~ 477 (1084)
+|+... ...|+..++...... .+......+..++|.+.+.. ++++-...+.|+.+++... .....+....
T Consensus 397 ~Ll~an-~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l 470 (791)
T 3m0c_C 397 YLFFTN-RHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI 470 (791)
T ss_dssp EEEEEC-BSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred cccccc-ccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence 444433 344777777765422 23334456789999986664 4555556788999998753 2223333233
Q ss_pred CcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCc
Q 001403 478 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 557 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~ 557 (1084)
.....|++.+. .+.++++-...+.|.+.+++.......+.........|++.|.+.+|+..... ....|...++...
T Consensus 471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence 45567777543 23566666778899999988665544444445568899999987777765421 1256888888654
Q ss_pred eEeeeeeccccccCceEEEEEcCCCCEEEEEE-CCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEE-ECC
Q 001403 558 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE 635 (1084)
Q Consensus 558 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~-~~d 635 (1084)
.....+...- .....|++++.+..|+.+. ..+.|...++........+...........+++. +..|+.+ ...
T Consensus 548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~ 622 (791)
T 3m0c_C 548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN 622 (791)
T ss_dssp CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence 4433333222 5688999998877777765 4578999998765555444433333334456654 3344444 446
Q ss_pred CeEEEEEcCCCCeeeec
Q 001403 636 NRIKILETPESNSVDAA 652 (1084)
Q Consensus 636 g~i~iwd~~~~~~~~~~ 652 (1084)
+.|...+..+++.+..+
T Consensus 623 ~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 623 EAIFSANRLTGSDVNLL 639 (791)
T ss_dssp TEEEEEETTTCCCCEEE
T ss_pred CEEEEEeCCCCcceEEe
Confidence 78888887777555444
No 295
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.84 E-value=0.0052 Score=64.84 Aligned_cols=194 Identities=12% Similarity=0.156 Sum_probs=123.4
Q ss_pred CEEEEEe-CCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCC---CCc---EEEEEe-C--CCeEEEEEcC--Cceeeeee
Q 001403 807 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISKL 874 (1084)
Q Consensus 807 ~~l~~~s-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~la~g~-~--dg~i~iwd~~--~~~~~~~l 874 (1084)
.+++... .+.+.+||+ +|+.++.+.. +.+..+.+-|. +++ ++++.. . +++|.+|++. +++ +..+
T Consensus 41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i 116 (355)
T 3amr_A 41 SKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSM 116 (355)
T ss_dssp CEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEEC
T ss_pred cEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeec
Confidence 4444443 688999999 8999988864 55666666551 122 233333 3 5799999773 443 4433
Q ss_pred cc------cc-cCEEEEEE--cCC-CC-EEEEEeCCCcEEEEeCCC---CceeeeeeeecCCCCccCCCCceEEEEccCC
Q 001403 875 EG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ 940 (1084)
Q Consensus 875 ~~------h~-~~V~~l~~--spd-~~-~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 940 (1084)
.. .. ..+..+++ +|. ++ +++....+|.+..|++.. +.. ..+.++.+.-. +.+..+...+..
T Consensus 117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~-~~~lVR~f~lg----sq~EgcvvDd~~ 191 (355)
T 3amr_A 117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI-SGKKVRAFKMN----SQTEGMAADDEY 191 (355)
T ss_dssp SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE-EEEEEEEEECS----SCEEEEEEETTT
T ss_pred cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc-cceEEEEecCC----CCcceEEEcCCC
Confidence 21 11 56677888 774 44 677888899999999943 322 22333333222 257889999988
Q ss_pred CEEEEEeCC-eEEEEEcC-----CcceeeEeecCC-CCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEEcC-CCceeEEe
Q 001403 941 TRFLLVHET-HLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCRI 1008 (1084)
Q Consensus 941 ~~la~~~d~-~i~vwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~dg~i~vwd~~-~~~~~~~~ 1008 (1084)
..|.++.+. .|..++.+ +++.+.....+| ...+..|+. .++|+ ||++++ .+.+..|||.. +.+.+.+|
T Consensus 192 g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 192 GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADF 271 (355)
T ss_dssp TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEE
Confidence 888887544 45555644 344554432334 347888887 56666 666666 56799999997 77888777
Q ss_pred c
Q 001403 1009 L 1009 (1084)
Q Consensus 1009 ~ 1009 (1084)
.
T Consensus 272 ~ 272 (355)
T 3amr_A 272 R 272 (355)
T ss_dssp E
T ss_pred E
Confidence 5
No 296
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.83 E-value=0.0058 Score=68.51 Aligned_cols=252 Identities=11% Similarity=0.046 Sum_probs=144.6
Q ss_pred CccEEEecC-CCCEEEEEe-C-CeEEEEEcCCceeEEEEcCC---CCCeEEEEE-------cCCCCcEEEEEeCCC----
Q 001403 796 AVPCFALSK-NDAYLFSAS-G-GVISLYIVMTFKTILTIMPP---SPTATSLAF-------NPHDNNVIAIGMDDS---- 858 (1084)
Q Consensus 796 ~v~~l~~s~-dg~~l~~~s-d-g~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~d~~~la~g~~dg---- 858 (1084)
....|+|+| ++..|.++. . +.|++.|+.++......... ......++| ++ +++.|+++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 455555554 3 67999999887766555432 235889999 99 777555555443
Q ss_pred ---eEEEEEcCC-ceee-----eeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCC-------CCce------e--
Q 001403 859 ---TILIYNARS-SEVI-----SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVD-------GWGI------Q-- 913 (1084)
Q Consensus 859 ---~i~iwd~~~-~~~~-----~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~-------~~~~------~-- 913 (1084)
.|.+++... ++.. ..+... .....++++| ++.++++-..++.|..+|++ ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 366665443 2221 122211 2345688999 45556666678889999998 5443 0
Q ss_pred --eeeeeecCCCCccCCCCceEEEEccCCCEEEEE--eCCeEEEEEcC--Cccee--eEeec-----CC---------CC
Q 001403 914 --TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCL--KQWFP-----IS---------SV 971 (1084)
Q Consensus 914 --~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~--~~~~~--~~~~~-----~h---------~~ 971 (1084)
...+.....+ .....++|+|+|++|.++ ..+.|+.++.. ++... ..+.. ++ -.
T Consensus 298 g~~~~l~~~~~~-----~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~ 372 (496)
T 3kya_A 298 NTFKQLFTIADP-----SWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMN 372 (496)
T ss_dssp TTEEEEEECSSS-----SCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCS
T ss_pred cccceeEecCCC-----CCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccC
Confidence 0112222211 246799999999965554 56788886653 33210 11111 10 01
Q ss_pred CEE-EEEEc-------cCCCEEEEEeCCCcEEEEEcCCCceeEEeccccc-------cCCCC------cc-cceeeeEEE
Q 001403 972 PIS-QATFS-------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-------LRPTT------SC-LHVYPHAIA 1029 (1084)
Q Consensus 972 ~v~-~l~fs-------~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~-------~~~~~------~~-~~v~~~~~~ 1029 (1084)
... .++.. ++|.++++-..+..|+.++ .+|... .+..... ...+. .. .--.|..++
T Consensus 373 ~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v~-TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIa 450 (496)
T 3kya_A 373 NPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIVS-TYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLV 450 (496)
T ss_dssp SEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBEE-EEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEE
T ss_pred CCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCEE-EEecccccccccCccccccCCCCchhhhhcCCCcEEE
Confidence 233 45554 5677777767778999998 566443 3332110 00010 00 113477899
Q ss_pred ECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1030 AHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1030 ~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
+++++|.++++=.....|+.+++....
T Consensus 451 vd~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 451 YDDVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCCC
T ss_pred EECCCCEEEEEeCCCCEEEEEECCCCc
Confidence 998435555555556689998885544
No 297
>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B
Probab=97.80 E-value=0.01 Score=63.33 Aligned_cols=231 Identities=11% Similarity=0.002 Sum_probs=139.2
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEE-eCCCEEEEEEccCCccccceeeeecccccEeEEEeec
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 443 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 443 (1084)
..|+..++......+.. +.. ....+.+++|.+.+..|... ...+.|..+++.++..... .+.........+++.+
T Consensus 13 ~~I~~i~l~~~~~~~~~-~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~--~~~~~l~~p~glavd~ 88 (318)
T 3sov_A 13 RDLRLVDATNGKENATI-VVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN--VVVSGLLSPDGLACDW 88 (318)
T ss_dssp EEEEEEETTCTTSCCEE-EEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE--EEEECCSCCCEEEEET
T ss_pred CeEEEEECCCCceEEEE-Eec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE--EEcCCCCCccEEEEEc
Confidence 67788888765322111 111 12356789999865555555 4567899999887642211 1222234567899997
Q ss_pred CCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe--cCCeEEEEECCCCCceEeecCCC
Q 001403 444 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIKAWLYDSLGARVDYDAPG 521 (1084)
Q Consensus 444 d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg~i~iwd~~~~~~~~~~~~~~ 521 (1084)
.+.. +.++-...+.|.++++........+.........+++.+.. + .++.+. ..+.|...+++...........-
T Consensus 89 ~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l 165 (318)
T 3sov_A 89 LGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIERAGMDGSSRFIIINSEI 165 (318)
T ss_dssp TTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEEEEETTSCSCEEEECSSC
T ss_pred CCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEEEEEcCCCCeEEEEECCC
Confidence 6664 45555567899999976543333333444567888886532 3 444444 35788888877544433333334
Q ss_pred CeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 522 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 522 ~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
.....+++++++..|+.+-. ..+.|..+|+..........+.. .....+++.. +..+.+-...+.|..++..+
T Consensus 166 ~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~lywtd~~~~~V~~~~~~~ 238 (318)
T 3sov_A 166 YWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DILYWTDWSTHSILACNKYT 238 (318)
T ss_dssp SCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEEEEEETTTTEEEEEETTT
T ss_pred CCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEEEEEecCCCeEEEEECCC
Confidence 46789999998888887753 35679999886433322222222 4556677643 33444555667888888877
Q ss_pred CeEEEEEc
Q 001403 602 VQLLTTID 609 (1084)
Q Consensus 602 ~~~~~~~~ 609 (1084)
|+....+.
T Consensus 239 G~~~~~i~ 246 (318)
T 3sov_A 239 GEGLREIH 246 (318)
T ss_dssp CCSCEEEE
T ss_pred CCceEEEe
Confidence 76655554
No 298
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.78 E-value=0.049 Score=56.17 Aligned_cols=233 Identities=14% Similarity=0.128 Sum_probs=153.5
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 876 (1084)
.+.-.+|..+.+|.-....+.++|+++.+.+....- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 70 dsAIMnP~~~ViALrag~~LQiFnletK~klks~~~-~e~VvfWkWis--~~~L~lVT-~taVyHWs~~~~s~P~kvFdR 145 (365)
T 2xzh_A 70 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 145 (365)
T ss_dssp SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEEC-SSCEEEEEECS--SSEEEEEE-SSEEEEEESSTTCCCEEEEEC
T ss_pred ceeeeCCCccEEEEecCCeEEEechHHhhhhcceec-CCccEEEEecC--CCeEEEEc-CCcEEEEcccCCCCCceeeec
Confidence 355678999999888889999999999988888774 35777778875 45666665 56799999975 355566655
Q ss_pred cc----cCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCC----
Q 001403 877 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT---- 941 (1084)
Q Consensus 877 h~----~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~---- 941 (1084)
|. ..|..-..+++.++++..|- .|.+.+|..+.+. -+..+||.. .-..+-.+|.
T Consensus 146 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 214 (365)
T 2xzh_A 146 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 214 (365)
T ss_dssp CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCE
T ss_pred chhcccceEEEEEECCCCCEEEEEeEeccCCccceeEEEEeecccc------cceeeeeee-----eeEEEecCCCCCCc
Confidence 53 46888888999999886553 3778999998743 344566643 1122333332
Q ss_pred -EEEEEeC----CeEEEEEcCCc---ce------eeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 942 -RFLLVHE----THLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 942 -~la~~~d----~~i~vwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
+++.+.. ++++|.++... .. ...+++. -..---++..|+.-..++.-+.-|.|.+||+++|.++
T Consensus 215 ~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK~G~ihlyDleTgt~i 294 (365)
T 2xzh_A 215 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 294 (365)
T ss_dssp EEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeCCcEEEEEEcccCcEE
Confidence 3333322 58999998532 11 1111111 1333446777776677888889999999999999998
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.+-. -+.+.|+..+ .+. +..=++.....|+|.--.+.+..
T Consensus 295 ~~nr--------IS~d~iF~ta--~~~-~~~Gi~~Vnr~GqVl~v~v~~~~ 334 (365)
T 2xzh_A 295 YMNR--------ISGETIFVTA--PHE-ATAGIIGVNRKGQVLSVCVEEEN 334 (365)
T ss_dssp EEEE--------CCSSCEEEEE--EEG-GGTEEEEEETTCEEEEEEECTTT
T ss_pred EEec--------cCCCceEEec--ccC-CCCcEEEEcCCCEEEEEEECccc
Confidence 6655 1244455332 222 23456666699998887776543
No 299
>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}
Probab=97.74 E-value=0.0091 Score=66.96 Aligned_cols=250 Identities=10% Similarity=0.105 Sum_probs=139.7
Q ss_pred CeEEEEEcC-CCCEEEEE-eCCCEEEEEEccCCccccceeeee-cccccEeEEEe-------ecCCCcEEEEEEeCCC--
Q 001403 390 SVNRVVWSP-DGSLLGVA-YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK-- 457 (1084)
Q Consensus 390 ~V~~v~fsp-dg~~las~-~~dg~v~iwd~~~~~~~~~~~~l~-~h~~~V~~l~~-------s~d~~~l~l~s~~~d~-- 457 (1084)
....++|+| ++..|..+ ...+.|++.|.+++...... ... ........++| +++|+. ++.+...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~-~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~ 216 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPL-NINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK 216 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEE-CCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEE-ccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence 467899999 35545444 44467888998886543211 110 12235889999 999984 44443332
Q ss_pred -----cEEEEECCC-Ccee-----eEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECC-------CCCc------
Q 001403 458 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------ 513 (1084)
Q Consensus 458 -----~i~vwd~~~-g~~~-----~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~-------~~~~------ 513 (1084)
.|.+.+... |... ..+... .....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~ 294 (496)
T 3kya_A 217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK 294 (496)
T ss_dssp GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence 366666443 2221 122211 12234566442 45666777788889999987 4432
Q ss_pred -----e-Eeec-CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecC--CCceEe--eeeecc---c---------ccc
Q 001403 514 -----R-VDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGL---Q---------LQH 570 (1084)
Q Consensus 514 -----~-~~~~-~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~--~~~~~~--~~~~~~---~---------~~~ 570 (1084)
. ..+. ........++|+|+|+.|+.+-. +...|+.++. .++... ..+.+. . ..-
T Consensus 295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f 371 (496)
T 3kya_A 295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM 371 (496)
T ss_dssp GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence 1 1111 22345678999999997666642 3567888554 333321 222221 0 001
Q ss_pred CceE-EEEEc-------CCCCEEEEEECCCcEEEEECCCCeEEEEEcCCC----------------------CCCCcceE
Q 001403 571 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI 620 (1084)
Q Consensus 571 ~~v~-~~~~s-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v 620 (1084)
.... .++.. +++..+++=.....|+.++ .+|. +.++.+.+ .......+
T Consensus 372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI 449 (496)
T 3kya_A 372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL 449 (496)
T ss_dssp SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence 1234 45554 4556666666778899998 4564 33433211 01224578
Q ss_pred EEecC-CCEEEEEECCCeEEEEEcCCCCee
Q 001403 621 CFNKN-GTLLAVIANENRIKILETPESNSV 649 (1084)
Q Consensus 621 ~~s~~-~~~l~~~~~dg~i~iwd~~~~~~~ 649 (1084)
+++++ |.++++=..++.|+.+++......
T Consensus 450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~ 479 (496)
T 3kya_A 450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV 479 (496)
T ss_dssp EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence 89986 655555556788998888765443
No 300
>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A
Probab=97.73 E-value=0.007 Score=63.87 Aligned_cols=193 Identities=12% Similarity=0.136 Sum_probs=120.7
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeeccc--CCCc---EEEEEe-c--CCeEEEEECCCCC-ceEeecC
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIFSIS-V--DGKIKAWLYDSLG-ARVDYDA 519 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~--~~~~---~l~s~s-~--dg~i~iwd~~~~~-~~~~~~~ 519 (1084)
++++....+-+.+||+ +|+.++.+.. +.++.+.+.+. -.|. ++++.. . +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~ 118 (355)
T 3amr_A 42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD 118 (355)
T ss_dssp EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence 4666667788999998 9999988864 45666655331 0111 223333 3 5789999875322 2333311
Q ss_pred ------CC-CeEEEEEE--cCC-CCE-EEEEeeCCCCCeeEEEecC-------CCceEeeeeeccccccCceEEEEEcCC
Q 001403 520 ------PG-LGCTRMAY--SAN-GRR-LFSCGTSKEGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 520 ------~~-~~i~~~~~--s~d-~~~-l~~~~~~~~~~~~i~~wd~-------~~~~~~~~~~~~~~~~~~v~~~~~s~~ 581 (1084)
.. ..+..+|+ +|. +++ +++... ++.+..|++ .+++.++.+... ..+..+...+.
T Consensus 119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~ 190 (355)
T 3amr_A 119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE 190 (355)
T ss_dssp TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence 11 45666777 774 443 444332 456888877 244667777654 46888999999
Q ss_pred CCEEEEEECCCcEEEEECC-----CCeEEEEEcCCCCCCCcceEEEe--cCCC-EEEEEE-CCCeEEEEEcC-CCCeeee
Q 001403 582 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICFN--KNGT-LLAVIA-NENRIKILETP-ESNSVDA 651 (1084)
Q Consensus 582 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~s--~~~~-~l~~~~-~dg~i~iwd~~-~~~~~~~ 651 (1084)
..+|+.+-++..|..++.+ +++.+..+....-...+..+++- ++++ +|++.+ .++++.+||.. +.+.+..
T Consensus 191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~ 270 (355)
T 3amr_A 191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD 270 (355)
T ss_dssp TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence 9999999999877777755 35566555432222246777774 5555 566655 57799999996 4444444
Q ss_pred c
Q 001403 652 A 652 (1084)
Q Consensus 652 ~ 652 (1084)
+
T Consensus 271 f 271 (355)
T 3amr_A 271 F 271 (355)
T ss_dssp E
T ss_pred E
Confidence 3
No 301
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.64 E-value=0.11 Score=55.96 Aligned_cols=233 Identities=14% Similarity=0.123 Sum_probs=154.0
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeecc
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG 876 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~~~l~~ 876 (1084)
.+.-.+|..+.+|.-...++.+||+++.+.+....-. ..|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-
T Consensus 69 dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR 144 (494)
T 1bpo_A 69 DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDR 144 (494)
T ss_dssp SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEEC
T ss_pred ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheec
Confidence 3566788889898888899999999999888887643 3566677764 34666655 56799999974 345666665
Q ss_pred cc----cCEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCC-----
Q 001403 877 HS----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ----- 940 (1084)
Q Consensus 877 h~----~~V~~l~~spd~~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg----- 940 (1084)
|. ..|..-..++|.++++..|- .|.+.+|.++.+. -+..+||.. .-..+-.+|
T Consensus 145 ~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~ 213 (494)
T 1bpo_A 145 HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEES 213 (494)
T ss_dssp CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEE
T ss_pred chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCc
Confidence 53 46888888999999886542 4778999998743 344566643 122232333
Q ss_pred CEEEEEe----CCeEEEEEcCCc---ce-----eeE-eecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCcee
Q 001403 941 TRFLLVH----ETHLAIYEAEEL---TC-----LKQ-WFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1005 (1084)
Q Consensus 941 ~~la~~~----d~~i~vwd~~~~---~~-----~~~-~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~ 1005 (1084)
.+++.+. .++++|.++... .. ... .++. -..---++..|+.-..++.-+.-|.|.+||+.+|.++
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceee
Confidence 2333342 268999998543 11 111 1111 1334456778887778888889999999999999998
Q ss_pred EEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1006 CRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1006 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
.+-. -+.+.|+.. +.+. +..-++.....|+|.--.+.+..
T Consensus 294 ~~nr--------Is~~~iF~t--~~~~-~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 294 YMNR--------ISGETIFVT--APHE-ATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp EEEE--------CCSSCEEEE--EEET-TTTEEEEEETTCEEEEEEECTTT
T ss_pred eeec--------ccCCceEEe--cccC-CCCcEEEEccCceEEEEEEcccc
Confidence 6654 124445532 2333 24556666699998887776543
No 302
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=97.62 E-value=0.035 Score=66.90 Aligned_cols=205 Identities=8% Similarity=-0.009 Sum_probs=128.0
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCc----eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS 867 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~ 867 (1084)
...+..+++++.+..|..+. .+.|+.+++... .....+.........||+.+.+++++++-...+.|.+.++..
T Consensus 423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG 502 (791)
T 3m0c_C 423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG 502 (791)
T ss_dssp CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence 44567899998777776665 578998888752 223333334456678999884456666666788999999875
Q ss_pred ceeeeeecccccCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEE
Q 001403 868 SEVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL 945 (1084)
Q Consensus 868 ~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 945 (1084)
......+...-.....|++.|.+.+|..+.. . +.|...+++...... ++.. .. .....|++++.+..|..
T Consensus 503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~--lv~~---~l---~~P~GLavD~~~~~LYw 574 (791)
T 3m0c_C 503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE---NI---QWPNGITLDLLSGRLYW 574 (791)
T ss_dssp SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE--EECS---SC---SCEEEEEEETTTTEEEE
T ss_pred CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE--EEeC---CC---CCceEEEEecCCCeEEE
Confidence 4433333334456889999998666655543 2 678888887643222 2211 11 15779999988887777
Q ss_pred E--eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 946 V--HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 946 ~--~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+ ..+.|...++... ....+... .-....+|++.. +.++++-...+.|...|..+|+.+..+
T Consensus 575 aD~~~~~I~~~d~dG~-~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 575 VDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp EETTTTEEEEEETTSC-SCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EeCCCCcEEEEecCCC-ceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 5 4567999998643 33333332 123445666643 344445456678888887777655444
No 303
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.61 E-value=0.015 Score=63.30 Aligned_cols=228 Identities=11% Similarity=0.066 Sum_probs=121.3
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCcee--EEEEc---CCCCCeEEEEEcCCC----CcEEEEEeCC-----CeEE
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STIL 861 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~d----~~~la~g~~d-----g~i~ 861 (1084)
....++|.|||+++++-..|.|.+++ +++. +..+. ........++|+| + +.+.++-... +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776679999998 4432 22222 1235688999999 5 4444443332 6788
Q ss_pred EEEcCCce-----e-eeeec---ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcee------
Q 001403 862 IYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ------ 913 (1084)
Q Consensus 862 iwd~~~~~-----~-~~~l~---~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~~~------ 913 (1084)
.|+...+. . +..+. +.......++|.|||.+.++.+.. |.|.-++.+. ...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 88877531 1 12233 111123579999999877775432 4455555443 100
Q ss_pred -----eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE-eCCeE------EEEEcCCcc------------------ee
Q 001403 914 -----TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV-HETHL------AIYEAEELT------------------CL 962 (1084)
Q Consensus 914 -----~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~-~d~~i------~vwd~~~~~------------------~~ 962 (1084)
....+. .++. ....++|+| +|.+.++- ..+.+ .|.-+..|. .+
T Consensus 188 ~~~~~~~~i~a--~G~r----np~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~ 261 (352)
T 2ism_A 188 GRRGARPEVYS--LGHR----NPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPL 261 (352)
T ss_dssp TCTTSCTTEEE--ECCS----EECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCS
T ss_pred CCCCCCccEEE--EcCC----CcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCe
Confidence 000000 1111 256789999 67766662 22221 233222222 11
Q ss_pred eEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe-ccccccCCCCcccceeeeEEEECCCCCCEEEEE
Q 001403 963 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI-LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVG 1041 (1084)
Q Consensus 963 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~ 1041 (1084)
.. . .+......++| .+|.++++....+.|...++......... ....++.. .-++..+++.| ||.+.++.
T Consensus 262 ~~-~-~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~-----~~rp~~v~~~p-dG~lyv~~ 332 (352)
T 2ism_A 262 YF-W-PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSG-----FGRLREVQVGP-DGALYVTT 332 (352)
T ss_dssp EE-C-TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEES-----SCCEEEEEECT-TSCEEEEE
T ss_pred Ee-c-CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheeccc-----CCCeeEEEECC-CCcEEEEE
Confidence 11 1 22335677888 56777666666677877777654311000 00011111 12466788888 57666554
Q ss_pred e
Q 001403 1042 L 1042 (1084)
Q Consensus 1042 ~ 1042 (1084)
.
T Consensus 333 ~ 333 (352)
T 2ism_A 333 S 333 (352)
T ss_dssp C
T ss_pred e
Confidence 3
No 304
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.58 E-value=0.00046 Score=82.78 Aligned_cols=205 Identities=9% Similarity=0.011 Sum_probs=124.3
Q ss_pred CCccEEEecCCCCEEEEEe--CCeEEEEEcCC----ceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc
Q 001403 795 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
..+..++|++.+..|..+. .+.|+.+++.+ ......+.........+++.+.+++++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3566889999888877775 57899999875 22222222122345678888635666666566789999998755
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeC-C-CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 946 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 946 (1084)
.....+.........+++.|++.+|..+.. . +.|.+.++....... ++.. . . .....|+|+|++..|.++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~~--~-l---~~PnGlavd~~~~~LY~a 557 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVTE--N-I---QWPNGITLDLLSGRLYWV 557 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESCS--S-C---SSCCCEEECTTTCCEEEE
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEeC--C-C---CCccEEEEeccCCEEEEE
Confidence 433333322345678899987655554432 2 678887776532111 1111 1 1 135689999987766664
Q ss_pred --eCCeEEEEEcCCcceeeEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEec
Q 001403 947 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1009 (1084)
Q Consensus 947 --~d~~i~vwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~ 1009 (1084)
..+.|.++++.... ...+... .......|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 55689999986433 3332221 1223345566544 455555667899999999898876664
No 305
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.57 E-value=0.014 Score=61.06 Aligned_cols=204 Identities=12% Similarity=0.078 Sum_probs=125.7
Q ss_pred CCCCccEEEecCCCCEEEEEe--CCeEEEEEcCCceeEEE-EcC----CC--CCeEEEEE---cCCCCcEEEEEe-----
Q 001403 793 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM----- 855 (1084)
Q Consensus 793 ~~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~la~g~----- 855 (1084)
......++.|.+....+..++ .++|..||...+..... +.+ .. ..+..+.+ .| +++++++..
T Consensus 11 ~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af 89 (334)
T 2p9w_A 11 KNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSF 89 (334)
T ss_dssp TTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTT
T ss_pred cccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEcccccc
Confidence 344556889988666666666 79999999986644333 222 11 13578999 68 688887644
Q ss_pred --------CCCeEEEEEcC---Cceeeeeec--ccc-----------cCEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCC
Q 001403 856 --------DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGW 910 (1084)
Q Consensus 856 --------~dg~i~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~spd~~~l~s~s~d-g~I~iwd~~~~ 910 (1084)
.+..|..||+. +++.+.... +.. .....++..++|+..++++.- +.|...+.+..
T Consensus 90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~ 169 (334)
T 2p9w_A 90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGK 169 (334)
T ss_dssp CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSC
T ss_pred cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCC
Confidence 26789999999 787664433 221 247899999999999998888 77766666643
Q ss_pred ceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eCCeEEEEEcCCcce--eeEeecCC---CCCEEEE-EEccCCC
Q 001403 911 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCR 983 (1084)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d~~i~vwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~ 983 (1084)
.... ..+...... .....+.+++.|||..|++. ..+.|..+|+.+... +..-..+. -.....+ .--.+|+
T Consensus 170 ~~~~-~~~~~~~~~--~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~ 246 (334)
T 2p9w_A 170 TVST-FAWESGNGG--QRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNE 246 (334)
T ss_dssp CEEE-EEECCCCSS--SCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTE
T ss_pred EEee-eeecCCCcc--cccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCE
Confidence 2211 111111111 11247799999999988884 588899999885333 21110021 1223443 3234777
Q ss_pred E-EEEEeCCCcEEEEEcC
Q 001403 984 M-VFTSFVDGTLSIHEAS 1000 (1084)
Q Consensus 984 ~-l~t~~~dg~i~vwd~~ 1000 (1084)
. |++....+.+.+.+-+
T Consensus 247 vllV~~~~~~~~~l~S~D 264 (334)
T 2p9w_A 247 SVLVGARAPYAISFRSWD 264 (334)
T ss_dssp EEEEEEETTEEEEEECSS
T ss_pred EEEEEcCCCCEEEEECCC
Confidence 7 5555555555555443
No 306
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=97.57 E-value=0.00041 Score=83.21 Aligned_cols=234 Identities=10% Similarity=-0.011 Sum_probs=133.9
Q ss_pred CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEECCC----CceeeEeccCCCcEEEEe
Q 001403 409 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSLC 484 (1084)
Q Consensus 409 dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd~~~----g~~~~~~~~h~~~v~~~~ 484 (1084)
.+.|++.++.+.+.... + .....+..++|.+.+.. ++++-...+.|..+++.+ ......+.........++
T Consensus 385 ~~~I~~id~~~~~~~~~---~-~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gla 459 (699)
T 1n7d_A 385 RHEVRKMTLDRSEYTSL---I-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLA 459 (699)
T ss_dssp TTC-CEECTTSCCEECC---S-CCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEE
T ss_pred ccceEEEeCCCCcceee---e-ccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEE
Confidence 34677788776543321 1 22235678999987763 344444567899999875 222222211112234566
Q ss_pred ecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeee
Q 001403 485 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 564 (1084)
Q Consensus 485 ~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~ 564 (1084)
+.+. ++.++++-...+.|.+.+++.......+.........+++.|++.+|+..... ..+.|..+++..... ..+.
T Consensus 460 vD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l~ 535 (699)
T 1n7d_A 460 VDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSLV 535 (699)
T ss_dssp CCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEES
T ss_pred EEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEEE
Confidence 6432 34555565667889999887654444333333455778999977766655321 125688887754322 2221
Q ss_pred ccccccCceEEEEEcCCCCEEEEE-ECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEc
Q 001403 565 GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET 643 (1084)
Q Consensus 565 ~~~~~~~~v~~~~~s~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~ 643 (1084)
... ......++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++.
T Consensus 536 ~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~ 612 (699)
T 1n7d_A 536 TEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANR 612 (699)
T ss_dssp CSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEET
T ss_pred eCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEc
Confidence 111 1356789999987666555 4667899999875443333332222223456666654 44555556688999998
Q ss_pred CCCCeeeeccc
Q 001403 644 PESNSVDAAGV 654 (1084)
Q Consensus 644 ~~~~~~~~~~~ 654 (1084)
.+++.+..+..
T Consensus 613 ~~G~~~~~i~~ 623 (699)
T 1n7d_A 613 LTGSDVNLLAE 623 (699)
T ss_dssp TTEEEEECCCT
T ss_pred cCCCceEEeec
Confidence 87766665543
No 307
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.56 E-value=0.02 Score=62.23 Aligned_cols=227 Identities=12% Similarity=0.069 Sum_probs=126.5
Q ss_pred CCccEEEecCCCCEEEEEeCCeEEEEEcCCce-eEEEEc---CCCCCeEEEEEcCC---CCcEEEEEeC---C----CeE
Q 001403 795 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI 860 (1084)
Q Consensus 795 ~~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~la~g~~---d----g~i 860 (1084)
.....++|.|||+++++-.+|.|.+++ .+++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 346789999999977776689999987 4454 222221 12356889999993 3544444332 3 578
Q ss_pred EEEEcCCc-------eee-eeec---ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCcee---
Q 001403 861 LIYNARSS-------EVI-SKLE---GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQ--- 913 (1084)
Q Consensus 861 ~iwd~~~~-------~~~-~~l~---~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~~~--- 913 (1084)
..|+...+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+. ...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~--~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~n 184 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHN--GGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADN 184 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCC--CCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcC--CceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCC
Confidence 88887654 111 1122 132 4579999999888875432 3444444432 100
Q ss_pred ---eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE--eCC--eEEEEEcCCcc------------------eeeEeec
Q 001403 914 ---TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFP 967 (1084)
Q Consensus 914 ---~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~--~i~vwd~~~~~------------------~~~~~~~ 967 (1084)
....+. .++. ....++|+| +|.+.++- .+. .|.+.. .|. .+..+..
T Consensus 185 pf~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~ 256 (354)
T 3a9g_A 185 PFPNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS 256 (354)
T ss_dssp SSTTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT
T ss_pred CCCCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC
Confidence 000111 1222 356899999 67776662 222 244332 221 1111101
Q ss_pred CCCCCEEEEEEc-------cCCCEEEEEeCCCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEE
Q 001403 968 ISSVPISQATFS-------CDCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFA 1039 (1084)
Q Consensus 968 ~h~~~v~~l~fs-------~dg~~l~t~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~ 1039 (1084)
. ......++|. .+|.++++....+.|...++... +...... ++.. ..-++..+++.| ||.+.+
T Consensus 257 ~-~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~---~~~~----~~~rp~~v~~~p-DG~lyv 327 (354)
T 3a9g_A 257 E-TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKIST---FFKN----VFGRLRDVVIDD-DGGILI 327 (354)
T ss_dssp C-CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEE---ECTT----TSCCEEEEEECT-TSCEEE
T ss_pred C-CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceee---eccC----CCCCeeEEEECC-CCcEEE
Confidence 1 3467788883 57877777767778888888754 3321111 1111 123467788999 577666
Q ss_pred EEe
Q 001403 1040 VGL 1042 (1084)
Q Consensus 1040 ~~~ 1042 (1084)
+..
T Consensus 328 ~~~ 330 (354)
T 3a9g_A 328 STS 330 (354)
T ss_dssp EEC
T ss_pred EEe
Confidence 654
No 308
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=97.47 E-value=0.13 Score=53.02 Aligned_cols=234 Identities=14% Similarity=0.118 Sum_probs=142.0
Q ss_pred EEEEcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEcc
Q 001403 339 SMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH 418 (1084)
Q Consensus 339 ~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~ 418 (1084)
+.-.+|..+.||... | .++.|+|+++..+..... ....|..=.|-.+. .|+-.+.. .|.-|+++
T Consensus 71 sAIMnP~~~ViALra-----g-----~~LQiFnletK~klks~~----~~e~VvfWkWis~~-~L~lVT~t-aVyHWs~~ 134 (365)
T 2xzh_A 71 SAIMNPASKVIALKA-----G-----KTLQIFNIEMKSKMKAHT----MTDDVTFWKWISLN-TVALVTDN-AVYHWSME 134 (365)
T ss_dssp EEEECSSSSEEEEEE-----T-----TEEEEEETTTTEEEEEEE----CSSCEEEEEECSSS-EEEEEESS-EEEEEESS
T ss_pred eeeeCCCccEEEEec-----C-----CeEEEechHHhhhhccee----cCCccEEEEecCCC-eEEEEcCC-cEEEEccc
Confidence 455688888888852 2 889999999876655433 23577777776543 45555444 59999998
Q ss_pred CCccccceeeeeccc----ccEeEEEeecCCCcEEEEEEe------CCCcEEEEECCCCceeeEeccCCCcEEEEeeccc
Q 001403 419 GGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG------DDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 488 (1084)
Q Consensus 419 ~~~~~~~~~~l~~h~----~~V~~l~~s~d~~~l~l~s~~------~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~ 488 (1084)
+..... +.+..|. ..|..-.-+++.+++ +++|- -.|.+.+|..+.+ .-+.++||...-..+.+...
T Consensus 135 ~~s~P~--kvFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~~~~~g~ 210 (365)
T 2xzh_A 135 GESQPV--KMFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQFKMEGN 210 (365)
T ss_dssp TTCCCE--EEEECCGGGTTCEEEEEEECTTSCEE-EEEEEEEETTEEEEEEEEEETTTT-EEEEECCSEEEEEEECCTTC
T ss_pred CCCCCc--eeeecchhcccceEEEEEECCCCCEE-EEEeEeccCCccceeEEEEeeccc-ccceeeeeeeeeEEEecCCC
Confidence 644322 2344443 357777788898863 33332 2467889996655 45678888776665555322
Q ss_pred CCCc-EEEEEecC---CeEEEEECCCC---Cce-----Ee--ec--CCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe
Q 001403 489 ENIH-FIFSISVD---GKIKAWLYDSL---GAR-----VD--YD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 552 (1084)
Q Consensus 489 ~~~~-~l~s~s~d---g~i~iwd~~~~---~~~-----~~--~~--~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w 552 (1084)
.... +++.+... +.+++-++... ... .. +. ....-..++..|+.-..++..+. -|.+++|
T Consensus 211 ~~~~~lf~fa~r~~~g~kLhIiEi~~~~~~~~~f~kk~vdi~fppea~~DFPVamqvs~kygviyviTK----~G~ihly 286 (365)
T 2xzh_A 211 AEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGYIHLY 286 (365)
T ss_dssp SSCEEEEEEEEEETTEEEEEEEECSSCCTTCCCCCCEEEEECCCTTCTTCCEEEEEEETTTTEEEEEET----TSEEEEE
T ss_pred CCCceEEEEEEecCCCcEEEEEEcCCCCCCCCCcccccceeeCCccccCCceEEEEecccCCEEEEEeC----CcEEEEE
Confidence 2222 33333332 58889888543 111 11 11 11234557788888888887765 7789999
Q ss_pred cCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEEC
Q 001403 553 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 599 (1084)
Q Consensus 553 d~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~ 599 (1084)
|+.++.++..-+-.. ..|...+-..+..-+++....|.|.--.+
T Consensus 287 DleTgt~i~~nrIS~---d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v 330 (365)
T 2xzh_A 287 DLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCV 330 (365)
T ss_dssp ETTTCCEEEEEECCS---SCEEEEEEEGGGTEEEEEETTCEEEEEEE
T ss_pred EcccCcEEEEeccCC---CceEEecccCCCCcEEEEcCCCEEEEEEE
Confidence 999999876655444 45554444444444444445555444333
No 309
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.33 E-value=0.03 Score=60.82 Aligned_cols=238 Identities=9% Similarity=0.069 Sum_probs=127.1
Q ss_pred CccEEEecCCCC-EEEEEeCCeEEEEEcCCceeEEEEc-------CCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 001403 796 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM-------PPSPTATSLAFNPH---DNNVIAIGMD-------D 857 (1084)
Q Consensus 796 ~v~~l~~s~dg~-~l~~~sdg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---d~~~la~g~~-------d 857 (1084)
....|+|.|+|+ ++++-..|.|++++.. ++....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 457899999999 7766667999999854 33221111 12345689999993 3444444332 2
Q ss_pred CeEEEEEcCCc-------eee-eeec-----ccccCEEEEEEcCCCCEEEEEeCC-------------CcEEEEeCCCCc
Q 001403 858 STILIYNARSS-------EVI-SKLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG 911 (1084)
Q Consensus 858 g~i~iwd~~~~-------~~~-~~l~-----~h~~~V~~l~~spd~~~l~s~s~d-------------g~I~iwd~~~~~ 911 (1084)
..|..|++..+ +.+ ..+. .|. ...|+|.|||.+.++.+.. |.|.-.+.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666766532 111 1121 132 3569999999777765442 345555654310
Q ss_pred ee----------eeeeeecCCCCccCCCCceEEEEcc-CCCEEEEE--eCCeEEEEEcCCcce-----------------
Q 001403 912 IQ----------TCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC----------------- 961 (1084)
Q Consensus 912 ~~----------~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~--~d~~i~vwd~~~~~~----------------- 961 (1084)
.. ...... .++. ....++|.| +|.+.++- .++.=.|.-+..+.-
T Consensus 176 p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~ 249 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKI 249 (353)
T ss_dssp CTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCC
T ss_pred CCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCcc
Confidence 00 000110 1222 367899999 67666652 222222222211110
Q ss_pred ------------eeEeecCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccc
Q 001403 962 ------------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLH 1022 (1084)
Q Consensus 962 ------------~~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 1022 (1084)
...+.-.+......++|.. +|.++++....+.|...++..+....... .+. ...
T Consensus 250 ~~~~~~~~~~~~~P~~~~~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----~~~ 322 (353)
T 2g8s_A 250 PEAKGEIVAGTEQPVFYWKDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----DRG 322 (353)
T ss_dssp TTCCBSSCTTSCCCSEEESSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----GGC
T ss_pred CcccCCCCCCccCCeEEeCCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----CCC
Confidence 0000011234677788863 57777777777888888888765432211 111 111
Q ss_pred eeeeEEEECCCCCCEEEEEe-CCCcEEEEcC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1052 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~-~dg~v~vw~~ 1052 (1084)
-.+..+++.| ||.+.++.. .+| +||.+
T Consensus 323 ~rp~~v~~~p-dG~lyv~td~~~g--~I~ri 350 (353)
T 2g8s_A 323 QRIRDVRTGP-DGYLYVLTDESSG--ELLKV 350 (353)
T ss_dssp CCEEEEEECT-TSCEEEEECSTTE--EEEEE
T ss_pred CceeEEEECC-CCcEEEEEeCCCC--EEEEE
Confidence 3567889999 577666543 344 45544
No 310
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=97.28 E-value=0.013 Score=63.00 Aligned_cols=111 Identities=13% Similarity=0.107 Sum_probs=82.4
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCC----CCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCcee----
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV---- 870 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~---- 870 (1084)
-.....+|..++.+.++.||.-++.....-+.+... -..|..+..+| +|++||..+ +..|.|-.+..+..
T Consensus 25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~ 102 (452)
T 3pbp_A 25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED 102 (452)
T ss_dssp EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence 345567889999999999999998754445555443 23688999999 899999876 55799988874321
Q ss_pred --------eeeecc------cccCEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCc
Q 001403 871 --------ISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGWG 911 (1084)
Q Consensus 871 --------~~~l~~------h~~~V~~l~~spd---~~~l~s~s~dg~I~iwd~~~~~ 911 (1084)
...+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 111211 2467999999994 5689999999999999999743
No 311
>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}
Probab=97.22 E-value=0.029 Score=61.00 Aligned_cols=231 Identities=11% Similarity=0.026 Sum_probs=116.0
Q ss_pred CCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeee---ecccccEeEEEeecC---CCcEEEEEEeCC-----C
Q 001403 389 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAP---CKQISVITCGDD-----K 457 (1084)
Q Consensus 389 ~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l---~~h~~~V~~l~~s~d---~~~l~l~s~~~d-----~ 457 (1084)
.....++|.|||+++++ ..+|.|.+++ +++. .....+ .........|+|+|+ +.. +.++.... +
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~-~~~~~~~v~~~g~~~p~gia~~pdf~~~g~-lYv~~~~~~~~~~~ 105 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRL-STYAELSVYHRGESGLLGLALHPRFPQEPY-VYAYRTVAEGGLRN 105 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEE-EEEEECCCCCSTTCSEEEEEECTTTTTSCE-EEEEEEECTTSSEE
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCc-cEeecceEeecCCCCceeEEECCCCCCCCE-EEEEEecCCCCCcc
Confidence 45778999999985555 5668899998 3431 111111 122346789999998 554 33333322 5
Q ss_pred cEEEEECCCCc-----ee-eEec---cCCCcEEEEeecccCCCcEEEEEec-------------CCeEEEEECCCC----
Q 001403 458 TIKVWDAVTGS-----RT-YSFE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL---- 511 (1084)
Q Consensus 458 ~i~vwd~~~g~-----~~-~~~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~---- 511 (1084)
.|..++...+. .+ ..+. +.......++|. +||.+.++.+. .|.|.-++.+..
T Consensus 106 ~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~ 183 (352)
T 2ism_A 106 QVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFG--PDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPG 183 (352)
T ss_dssp EEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEEC--TTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTT
T ss_pred EEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEEC--CCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCC
Confidence 78888876442 11 1232 111123467774 46666665432 145555555430
Q ss_pred --------CceEeecCCCCeEEEEEEcC-CCCEEEEEeeCCCC-----CeeEEEecCCC--------c--------eEee
Q 001403 512 --------GARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEG-----ESFLVEWNESE--------G--------AIKR 561 (1084)
Q Consensus 512 --------~~~~~~~~~~~~i~~~~~s~-d~~~l~~~~~~~~~-----~~~i~~wd~~~--------~--------~~~~ 561 (1084)
.....+...-.....++|+| +|++.++- ...+. ...|.+..... + ..+.
T Consensus 184 npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d-~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~ 262 (352)
T 2ism_A 184 NPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSE-HGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLY 262 (352)
T ss_dssp CTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEE-ECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSE
T ss_pred CcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEE-cCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeE
Confidence 00001111122456789999 55554443 22111 01233322110 0 1111
Q ss_pred eeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCe----E--EEEEcCCCCCCCcceEEEecCCCEEEEEEC
Q 001403 562 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----L--LTTIDAGGGLPENPRICFNKNGTLLAVIAN 634 (1084)
Q Consensus 562 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~----~--~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~ 634 (1084)
.+.. ......++| .++..+++.-..+.|...++.... . ...+- .....+..+++.|||.++++...
T Consensus 263 ~~~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~--~~~~rp~~v~~~pdG~lyv~~~~ 334 (352)
T 2ism_A 263 FWPQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL--SGFGRLREVQVGPDGALYVTTSN 334 (352)
T ss_dssp ECTT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE--ESSCCEEEEEECTTSCEEEEECS
T ss_pred ecCC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec--ccCCCeeEEEECCCCcEEEEEeC
Confidence 1111 124566777 456555555566677777665332 1 11221 11235788999999977766543
No 312
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=97.19 E-value=0.36 Score=51.99 Aligned_cols=259 Identities=11% Similarity=0.087 Sum_probs=148.2
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
...|.+.|+.++..+.+-.- ...+.-.+|..+.++.-. ..++.|+|+++.+.++....... |.--.|-.+
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e~---VvfWkWis~ 116 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL 116 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC------CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSSC---CCEEEEEET
T ss_pred CCeEEEEECCCCCcceeccc------ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCCC---ceEEEecCC
Confidence 44688888887654422221 123445788887777654 68999999999999999886554 555555544
Q ss_pred CCEEEEEECCCeEEEEEcCCC-CeeeeccccccceeEEEEcCCCceeeeeccCceeEecCCCCCCCCccceecccCcccc
Q 001403 626 GTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 704 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~~~~~~~s~~~~~l~~~~~d~~i~~ 704 (1084)
+.|+..+. ..|+-|++... .+...+.-|..
T Consensus 117 -~~l~lVT~-taVyHWsi~~~s~P~kvFdR~~~----------------------------------------------- 147 (494)
T 1bpo_A 117 -NTVALVTD-NAVYHWSMEGESQPVKMFDRHSS----------------------------------------------- 147 (494)
T ss_dssp -TEEEEECS-SEEEEEESSSSCCCEEEEECCGG-----------------------------------------------
T ss_pred -CeEEEEcC-CeeEEecccCCCCchhheecchh-----------------------------------------------
Confidence 35555544 68999998643 22221111100
Q ss_pred ccceeecCccceeeccCCccccceEEEEEEecCCCeEEEeec-------CCceEEeeccCCccCcCcccceecCCeeecC
Q 001403 705 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 777 (1084)
Q Consensus 705 w~~~~~~~~~~~~~~~~~~~~~~~i~~l~~s~~g~~l~~~~~-------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~ 777 (1084)
-....|.....+++.++++..+- .|.+.+|+...+..
T Consensus 148 -------------------L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~s----------------- 191 (494)
T 1bpo_A 148 -------------------LAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS----------------- 191 (494)
T ss_dssp -------------------GTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCE-----------------
T ss_pred -------------------cccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccccc-----------------
Confidence 01234555555666666554432 24555655443211
Q ss_pred CCCCccccccCcCCCCCCCccEEEecCC---CCEEEEEe----CCeEEEEEcCCc--------eeEEE-EcC---CCCCe
Q 001403 778 RHGPQFMVNDTTDSNSQEAVPCFALSKN---DAYLFSAS----GGVISLYIVMTF--------KTILT-IMP---PSPTA 838 (1084)
Q Consensus 778 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d---g~~l~~~s----dg~i~vwd~~~~--------~~~~~-~~~---~~~~i 838 (1084)
.. +. +|......+.+.-+ ...++.+. .+++++.++... +.... +-. ..+..
T Consensus 192 -----Q~---ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFP 261 (494)
T 1bpo_A 192 -----QP---IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFP 261 (494)
T ss_dssp -----EE---EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCE
T ss_pred -----ch---he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCce
Confidence 00 00 12211111111110 11233332 378999988542 11111 111 23456
Q ss_pred EEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC
Q 001403 839 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 910 (1084)
Q Consensus 839 ~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~ 910 (1084)
.++..|+ .-.++..-+.-|.|++||+.++.++..-+--...|..-+-..+..=++.....|.|.--.++..
T Consensus 262 vamqvs~-kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 262 VAMQISE-KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EEEEEET-TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred eEEEecc-cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 7888998 6668889999999999999999998776655666666555555455555567777766666653
No 313
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=97.18 E-value=0.041 Score=58.99 Aligned_cols=207 Identities=10% Similarity=0.034 Sum_probs=114.2
Q ss_pred CeEEEEEcCCCCEEEEEe------------CCCEEEEEEccCCcc-ccceeeeec-----ccccEeEEEeec--CCCcEE
Q 001403 390 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS 449 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~------------~dg~v~iwd~~~~~~-~~~~~~l~~-----h~~~V~~l~~s~--d~~~l~ 449 (1084)
..-.++..|+|..+++++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 344566788886666652 689999999984321 2222 2332 233566777765 454213
Q ss_pred EEEEeC--CCcEEEEECCCCc-e---eeEeccC-CCcEEEEeecccCCCcEEEEEec-----------------CCeEEE
Q 001403 450 VITCGD--DKTIKVWDAVTGS-R---TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA 505 (1084)
Q Consensus 450 l~s~~~--d~~i~vwd~~~g~-~---~~~~~~h-~~~v~~~~~~~~~~~~~l~s~s~-----------------dg~i~i 505 (1084)
+++-.. +.+|.+|+++.+. . +.++.+. -...+.+.+.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333222 5678888766432 1 2334332 23467777744 5666666531 234444
Q ss_pred EECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCC-ceE--eeeeeccccccCceEEEEEcC-C
Q 001403 506 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A 581 (1084)
Q Consensus 506 wd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~-~~~--~~~~~~~~~~~~~v~~~~~s~-~ 581 (1084)
++. .+.. .....-.....++|+||++.|+.+.. ..+.|+.|++.. ++. .+.+. . .+....+++.+ +
T Consensus 208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~ 277 (355)
T 3sre_A 208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT 277 (355)
T ss_dssp ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence 443 3222 22222234678999999999988764 255699998753 332 22331 1 25677889999 5
Q ss_pred CCEEEEEECC-CcEEEEECC--CCeEEEEEc
Q 001403 582 KDQILAAGDD-HVIKIWDMN--KVQLLTTID 609 (1084)
Q Consensus 582 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~ 609 (1084)
|+..+++..+ +.|..|+.. .+..+..+.
T Consensus 278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8877766533 344445543 244444443
No 314
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.08 E-value=0.024 Score=60.13 Aligned_cols=235 Identities=11% Similarity=0.001 Sum_probs=117.9
Q ss_pred CCCEEEEEe-CC-----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC-----CcEEEEECCCC
Q 001403 399 DGSLLGVAY-SK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTG 467 (1084)
Q Consensus 399 dg~~las~~-~d-----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d-----~~i~vwd~~~g 467 (1084)
++..++.|+ .+ ..+.+||+.+++-.. ...+....... + +...+++ +++.|+.+ ..+.+||+.++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~-~~~~~~~--l~v~GG~~~~~~~~~~~~~d~~~~ 88 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSF-LPSITRKRRYV-A-SVSLHDR--IYVIGGYDGRSRLSSVECLDYTAD 88 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEE-CCCCSSCCBSC-E-EEEETTE--EEEECCBCSSCBCCCEEEEETTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEe-CCCCChhhccc-c-EEEECCE--EEEEcCCCCCccCceEEEEECCCC
Confidence 445566665 32 358888988764211 11111111111 1 2223455 56666654 46899998877
Q ss_pred c---ee--eEeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 468 S---RT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 468 ~---~~--~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
+ -. ..+......-..+.+ ++.+++.|+.+ ..+.+||+.+.+-...-..+.......+..-+++.++
T Consensus 89 ~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv 164 (301)
T 2vpj_A 89 EDGVWYSVAPMNVRRGLAGATTL----GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYC 164 (301)
T ss_dssp TTCCCEEECCCSSCCBSCEEEEE----TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEE
T ss_pred CCCeeEECCCCCCCccceeEEEE----CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEE
Confidence 6 22 222111111122222 44667777654 3578888776543222111111111111123667777
Q ss_pred EEeeCCC-CCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCC
Q 001403 538 SCGTSKE-GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAG 611 (1084)
Q Consensus 538 ~~~~~~~-~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~ 611 (1084)
.++.++. ....+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||..+.+....-...
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 241 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT 241 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC
Confidence 7664332 13458899988876543321111 1112222333 55666666653 56899999988766543322
Q ss_pred CCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 612 GGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 612 ~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
.. .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 242 ~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 242 TP--RCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp SC--CBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred Cc--ccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCe
Confidence 22 12222333367777777655 457788887653
No 315
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=97.04 E-value=0.026 Score=59.04 Aligned_cols=168 Identities=10% Similarity=0.114 Sum_probs=108.7
Q ss_pred EcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeee-eecc----cc--cCEEEEEE---cCCCCEEEEEe---
Q 001403 831 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEG----HS--KRVTGLVF---SDALNILVSSG--- 897 (1084)
Q Consensus 831 ~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~-~l~~----h~--~~V~~l~~---spd~~~l~s~s--- 897 (1084)
+........+++|.+.++.++++.-..++|..|+...+.... .+.+ .. ..+..|.| .|+++++++..
T Consensus 8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 333444556789988556666655589999999998654332 3332 11 13578999 58888887544
Q ss_pred ----------CCCcEEEEeCC---CCceeeeeeeecCC-C------CccCCCCceEEEEccCCCEEEE-EeC-CeEEEEE
Q 001403 898 ----------GDAQIFVWDVD---GWGIQTCRSLQTPD-G------VMTLAPSETHIQFHKDQTRFLL-VHE-THLAIYE 955 (1084)
Q Consensus 898 ----------~dg~I~iwd~~---~~~~~~~~~~~~~~-~------~~~~~~~v~~~~~s~dg~~la~-~~d-~~i~vwd 955 (1084)
.+..|..+|+. +++.....-+.... + .. ......++..++|+.-++ +.. +.|...+
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~--~~~~nDvavD~~GnaYVt~s~~~~~I~rV~ 165 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKR--PFGVVQSAQDRDGNSYVAFALGMPAIARVS 165 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSC--CEEEEEEEECTTSCEEEEEEESSCEEEEEC
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCcccccccccccccc--ccCCceeEECCCCCEEEeCCCCCCeEEEEe
Confidence 26779999999 66543322221110 0 00 013779999999998887 455 6666666
Q ss_pred cCCcceeeEeecC-----CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 956 AEELTCLKQWFPI-----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 956 ~~~~~~~~~~~~~-----h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
.. |+.+..+... .....+.|++.|||..|++....|.+..+|+..
T Consensus 166 pd-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 166 AD-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp TT-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred CC-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 55 3333332211 122367999999999999888899999999884
No 316
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=97.04 E-value=0.034 Score=59.16 Aligned_cols=232 Identities=10% Similarity=0.013 Sum_probs=123.2
Q ss_pred CEEEEEe---CCeEEEEEcCCceeEE--EEcCCCCCeEEEEEcCCCCcEEEEEeCC----CeEEEEEcCCce--eeeeec
Q 001403 807 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSE--VISKLE 875 (1084)
Q Consensus 807 ~~l~~~s---dg~i~vwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~la~g~~d----g~i~iwd~~~~~--~~~~l~ 875 (1084)
..++.|+ ...+.+||..+.+-.. .+......-..+.+ ++++++.|+.+ ..+.+||..+.+ .+..+.
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p 89 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP 89 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence 3444454 2579999998765332 22222222222332 56788888765 578999998764 222232
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H- 947 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~- 947 (1084)
.....-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+... .....+..-++++++.| .
T Consensus 90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~ 159 (306)
T 3ii7_A 90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--------RCSHGMVEANGLIYVCGGSL 159 (306)
T ss_dssp SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEE
T ss_pred ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--------cceeEEEEECCEEEEECCCC
Confidence 21112222222 67888888865 4588999988653332211111 11112222366666664 2
Q ss_pred --------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEecccccc
Q 001403 948 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1014 (1084)
Q Consensus 948 --------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~ 1014 (1084)
-..+.+||..+.+-....... .......+..-+++.++.|+.+ ..+.+||+.+.+.... . .+
T Consensus 160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~-~---~~ 234 (306)
T 3ii7_A 160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMV-S---PM 234 (306)
T ss_dssp SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEEC-C---CC
T ss_pred CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEEC-C---CC
Confidence 345889999877533221111 1111111222367777777654 3588999998866522 1 12
Q ss_pred CCCCcccceeeeEEEECCCCCCEEEEEeCC-----CcEEEEcCCCCCCCcccCCCC
Q 001403 1015 RPTTSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1065 (1084)
Q Consensus 1015 ~~~~~~~~v~~~~~~~~p~d~~~l~~~~~d-----g~v~vw~~~~~~~~~~~~~~~ 1065 (1084)
+.. ....+++.. ++..++.|+.+ ..+.+||+. ..+|...++.
T Consensus 235 p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~ 281 (306)
T 3ii7_A 235 PWK-----GVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTE--TDKWVANSKV 281 (306)
T ss_dssp SCC-----BSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETT--TTEEEEEEEE
T ss_pred CCC-----ccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCC--CCeEEeCCCc
Confidence 221 111122222 36788888865 457778774 4568776543
No 317
>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}
Probab=97.04 E-value=0.22 Score=53.92 Aligned_cols=237 Identities=8% Similarity=-0.037 Sum_probs=118.7
Q ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceee----eecccccEeEEEeecC---CCcEEEEEEeC------C
Q 001403 390 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE----IDAHVGNVNDLAFSAP---CKQISVITCGD------D 456 (1084)
Q Consensus 390 ~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~----l~~h~~~V~~l~~s~d---~~~l~l~s~~~------d 456 (1084)
..+.++|.|||+.|.++...|.|.+++..+ .....+.. ..........++|+|+ +..+++..... .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 567899999999444556678999998543 21111111 1122345789999996 55433332221 2
Q ss_pred CcEEEEECCCC--ce--eeE----ec---cCCCcEEEEeecccCCCcEEEEEec-------------CCeEEEEECCCCC
Q 001403 457 KTIKVWDAVTG--SR--TYS----FE---GHGAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSLG 512 (1084)
Q Consensus 457 ~~i~vwd~~~g--~~--~~~----~~---~h~~~v~~~~~~~~~~~~~l~s~s~-------------dg~i~iwd~~~~~ 512 (1084)
..|..|++..+ .. ... +. .....-..++|. +||.+.++.+. .|.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 35666666533 11 111 11 011113457774 46655555433 2456666665320
Q ss_pred ------------ceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEe--------cCCCc---------------
Q 001403 513 ------------ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW--------NESEG--------------- 557 (1084)
Q Consensus 513 ------------~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~w--------d~~~~--------------- 557 (1084)
....+...-.....++|.|+...|.++-...++...|.+. ....+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~ 255 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGE 255 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBS
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCC
Confidence 1111111223578899999444444443322111223221 11100
Q ss_pred ------eEeeeeeccccccCceEEEEEcC-------CCCEEEEEECCCcEEEEECCCCeEEEEEcC-CCCCCCcceEEEe
Q 001403 558 ------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFN 623 (1084)
Q Consensus 558 ------~~~~~~~~~~~~~~~v~~~~~s~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s 623 (1084)
..+..+.. ......+.|.. ++.++++.-..+.|...++..++....... ......+..+++.
T Consensus 256 ~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~ 331 (353)
T 2g8s_A 256 IVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTG 331 (353)
T ss_dssp SCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEEC
T ss_pred CCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEEC
Confidence 00011111 12466677753 456666655677888888776654433221 1112357889999
Q ss_pred cCCCEEEEEE
Q 001403 624 KNGTLLAVIA 633 (1084)
Q Consensus 624 ~~~~~l~~~~ 633 (1084)
|||.++++..
T Consensus 332 pdG~lyv~td 341 (353)
T 2g8s_A 332 PDGYLYVLTD 341 (353)
T ss_dssp TTSCEEEEEC
T ss_pred CCCcEEEEEe
Confidence 9998666543
No 318
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=97.01 E-value=0.031 Score=59.35 Aligned_cols=225 Identities=12% Similarity=0.063 Sum_probs=118.1
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCC-----CeEEEEEcCCce-----eeeeecccccCEEEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-----VISKLEGHSKRVTGL 884 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~d-----g~i~iwd~~~~~-----~~~~l~~h~~~V~~l 884 (1084)
..+.+||..+.+-...-..+.......+... ++++++.|+.+ ..+.+||..+.+ .+..+......-.++
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~ 109 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT 109 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence 3588999887653321111111111112223 56788888865 368999988755 222222211222222
Q ss_pred EEcCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-eC-----CeEEE
Q 001403 885 VFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----THLAI 953 (1084)
Q Consensus 885 ~~spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~d-----~~i~v 953 (1084)
.+ ++++++.|+.++ .+.+||..+.+-.....+.. .. ....+..-++++++.| .+ ..+.+
T Consensus 110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 179 (301)
T 2vpj_A 110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT--AR------EGAGLVVASGVIYCLGGYDGLNILNSVEK 179 (301)
T ss_dssp EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS--CC------BSCEEEEETTEEEEECCBCSSCBCCCEEE
T ss_pred EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC--Cc------ccceEEEECCEEEEECCCCCCcccceEEE
Confidence 22 677888877543 58899988865433222211 11 1112222367766664 22 46899
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
||..+.+-....... .......+...+++.++.|+.+ ..+.+||+.+.+....-. ++.. ... .++
T Consensus 180 ~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~----~p~~----r~~-~~~ 249 (301)
T 2vpj_A 180 YDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS----MTTP----RCY-VGA 249 (301)
T ss_dssp EETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC----CSSC----CBS-CEE
T ss_pred EeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC----CCCc----ccc-eeE
Confidence 998876543321111 1111111222367777777764 468999999887653211 1221 111 122
Q ss_pred EECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCCC
Q 001403 1029 AAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~ 1064 (1084)
+.. ++..++.|+.++ .+.+||+. ..+|...++
T Consensus 250 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 286 (301)
T 2vpj_A 250 TVL--RGRLYAIAGYDGNSLLSSIECYDPI--IDSWEVVTS 286 (301)
T ss_dssp EEE--TTEEEEECCBCSSSBEEEEEEEETT--TTEEEEEEE
T ss_pred EEE--CCEEEEEcCcCCCcccccEEEEcCC--CCeEEEcCC
Confidence 222 367888887764 56777774 456876544
No 319
>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*
Probab=97.01 E-value=0.19 Score=54.38 Aligned_cols=230 Identities=15% Similarity=0.126 Sum_probs=117.2
Q ss_pred CCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee-eeecCCCCCeEEEEEcCC---CCEEEEEeC-
Q 001403 334 SSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-ALVRDPGVSVNRVVWSPD---GSLLGVAYS- 408 (1084)
Q Consensus 334 ~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~-~~~~~h~~~V~~v~fspd---g~~las~~~- 408 (1084)
-...+.++|.|||+++++- .+ +.|.++|. ++...+.. .+..........++|+|+ +.+|.++..
T Consensus 28 l~~P~~ia~~pdG~l~V~e-~~---------g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~ 96 (354)
T 3a9g_A 28 LEVPWSIAPLGGGRYLVTE-RP---------GRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASY 96 (354)
T ss_dssp CSCEEEEEEEETTEEEEEE-TT---------TEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEE
T ss_pred CCCCeEEEEcCCCeEEEEe-CC---------CEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEec
Confidence 3478999999999977773 12 67777763 22211110 011222356889999998 555554433
Q ss_pred ---C----CEEEEEEccCCc-cc---ccee-eee-cccccEeEEEeecCCCcEEEEEEeC-------------CCcEEEE
Q 001403 409 ---K----HIVQLYAYHGGS-DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCGD-------------DKTIKVW 462 (1084)
Q Consensus 409 ---d----g~v~iwd~~~~~-~~---~~~~-~l~-~h~~~V~~l~~s~d~~~l~l~s~~~-------------d~~i~vw 462 (1084)
+ ..|..|+...+. .+ +.+. .+. +.......++|.|||. +.++.+. .+.|.-.
T Consensus 97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~~G~I~ri 174 (354)
T 3a9g_A 97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSLAGKILRV 174 (354)
T ss_dssp ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCCSSEEEEE
T ss_pred cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCCCeEEEEE
Confidence 3 568888876541 11 1110 111 1111246799999997 4555332 2455555
Q ss_pred ECCCCc----------eeeEeccCCCcEEEEeecccCCCcEEEEEecCC---eEEEEECCCCC-----------------
Q 001403 463 DAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------------- 512 (1084)
Q Consensus 463 d~~~g~----------~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg---~i~iwd~~~~~----------------- 512 (1084)
+.. |+ .+. ..+|.. ...++|++. ++.++++-...+ .|.+. ..+.
T Consensus 175 ~~d-G~~p~~npf~~~~i~-a~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~~~~~~ 248 (354)
T 3a9g_A 175 DEE-GRPPADNPFPNSPIW-SYGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAGRGEFV 248 (354)
T ss_dssp CTT-SCCCTTSSSTTCCEE-EECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCCCTTSC
T ss_pred cCC-CCCCCCCCCCCCcEE-EEccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCCCCCCc
Confidence 543 22 111 123333 345677542 344444432221 13322 1111
Q ss_pred -ceEeecCCCCeEEEEEEc-------CCCCEEEEEeeCCCCCeeEEEecCCCc-eEe--eee-eccccccCceEEEEEcC
Q 001403 513 -ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTY-QGLQLQHNSVSVVHFDT 580 (1084)
Q Consensus 513 -~~~~~~~~~~~i~~~~~s-------~d~~~l~~~~~~~~~~~~i~~wd~~~~-~~~--~~~-~~~~~~~~~v~~~~~s~ 580 (1084)
....+.........++|. .+|.++++... .+.|...++... +.. ..+ .+. ...+..+++.|
T Consensus 249 ~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~~---~~rp~~v~~~p 321 (354)
T 3a9g_A 249 DPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKNV---FGRLRDVVIDD 321 (354)
T ss_dssp CCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTTT---SCCEEEEEECT
T ss_pred CCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccCC---CCCeeEEEECC
Confidence 112221223356788884 46655554332 445777777643 322 122 121 25688999999
Q ss_pred CCCEEEEEE
Q 001403 581 AKDQILAAG 589 (1084)
Q Consensus 581 ~~~~l~~~~ 589 (1084)
||...++..
T Consensus 322 DG~lyv~~~ 330 (354)
T 3a9g_A 322 DGGILISTS 330 (354)
T ss_dssp TSCEEEEEC
T ss_pred CCcEEEEEe
Confidence 987666553
No 320
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.92 E-value=0.069 Score=56.56 Aligned_cols=223 Identities=11% Similarity=0.063 Sum_probs=117.1
Q ss_pred CeEEEEEcCCceeEEEEcCCCCCe-EEEEEcCCCCcEEEEEeCCC-----eEEEEEcCCce--eeeeecccccCEEEEEE
Q 001403 815 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDS-----TILIYNARSSE--VISKLEGHSKRVTGLVF 886 (1084)
Q Consensus 815 g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~la~g~~dg-----~i~iwd~~~~~--~~~~l~~h~~~V~~l~~ 886 (1084)
..+.+||..+.+-...-..+.... .+++. - ++++++.|+.++ .+.+||..+.+ .+..+......-..+.+
T Consensus 30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~ 107 (302)
T 2xn4_A 30 RSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107 (302)
T ss_dssp CCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE
T ss_pred CcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE
Confidence 458899988765332211111111 12222 2 567888887553 68899988764 22222221112222222
Q ss_pred cCCCCEEEEEeCCC-----cEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-------CCeEEE
Q 001403 887 SDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-------ETHLAI 953 (1084)
Q Consensus 887 spd~~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-------d~~i~v 953 (1084)
++++++.|+.++ .+.+||+.+.+-.....+... .....+..-++++++.| . -..+.+
T Consensus 108 --~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~ 177 (302)
T 2xn4_A 108 --NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTR--------RSSVGVGVVGGLLYAVGGYDVASRQCLSTVEC 177 (302)
T ss_dssp --TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSC--------CBSCEEEEETTEEEEECCEETTTTEECCCEEE
T ss_pred --CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCc--------ccCceEEEECCEEEEEeCCCCCCCccccEEEE
Confidence 678888888664 578889887653332221111 11111222366666663 2 235889
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEE
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAI 1028 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1028 (1084)
||..+.+-...........-.++ ...+++.++.|+.+ ..+.+||..+.+....-. ++.. ... .++
T Consensus 178 yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~~~~----r~~-~~~ 247 (302)
T 2xn4_A 178 YNATTNEWTYIAEMSTRRSGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD----MNMC----RRN-AGV 247 (302)
T ss_dssp EETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC----CSSC----CBS-CEE
T ss_pred EeCCCCcEEECCCCccccccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC----CCCc----ccc-CeE
Confidence 99887653322111111111122 22367778887765 368899999887653211 1211 011 122
Q ss_pred EECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCC
Q 001403 1029 AAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1029 ~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~ 1063 (1084)
+.. ++..++.|+.++ .+.+||+.. .+|...+
T Consensus 248 ~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~ 283 (302)
T 2xn4_A 248 CAV--NGLLYVVGGDDGSCNLASVEYYNPTT--DKWTVVS 283 (302)
T ss_dssp EEE--TTEEEEECCBCSSSBCCCEEEEETTT--TEEEECS
T ss_pred EEE--CCEEEEECCcCCCcccccEEEEcCCC--CeEEECC
Confidence 222 367888888765 488888854 4687765
No 321
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=96.91 E-value=0.054 Score=57.40 Aligned_cols=192 Identities=12% Similarity=0.052 Sum_probs=99.6
Q ss_pred CCCcEEEEEEeCC-----CcEEEEECCCCceeeE--eccCCCcEEEEeecccCCCcEEEEEecCC-----eEEEEECCCC
Q 001403 444 PCKQISVITCGDD-----KTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL 511 (1084)
Q Consensus 444 d~~~l~l~s~~~d-----~~i~vwd~~~g~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~dg-----~i~iwd~~~~ 511 (1084)
+++ +++.|+.+ ..+.+||..+.+-... +......-..+.+ ++.+++.|+.++ .+.+||+.+.
T Consensus 61 ~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~ 134 (302)
T 2xn4_A 61 AGL--VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSN 134 (302)
T ss_dssp TTE--EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTT
T ss_pred CCE--EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCC
Confidence 555 56666644 3588999887753321 1111111122222 446777777654 4677777654
Q ss_pred CceEeecCCCCeE-EEEEEcCCCCEEEEEeeCCCC---CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEE
Q 001403 512 GARVDYDAPGLGC-TRMAYSANGRRLFSCGTSKEG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA 587 (1084)
Q Consensus 512 ~~~~~~~~~~~~i-~~~~~s~d~~~l~~~~~~~~~---~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 587 (1084)
+-...-..+.... .+++ .-+++.++.++.+... ...+.+||+.+.+-...-.... .......+.+ ++..++.
T Consensus 135 ~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~ 210 (302)
T 2xn4_A 135 EWFHVAPMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAV 210 (302)
T ss_dssp EEEEECCCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEE
T ss_pred eEeecCCCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEE
Confidence 4222211111111 1122 2366677776654332 3458899998876543321111 1122222223 5666677
Q ss_pred EECC-----CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCC-----eEEEEEcCCCC
Q 001403 588 AGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN 647 (1084)
Q Consensus 588 ~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg-----~i~iwd~~~~~ 647 (1084)
|+.+ ..+.+||..+.+....-..... .....+..-++++++.|+.++ .+.+||..+.+
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 278 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDK 278 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCc--cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCe
Confidence 7654 4689999998876654332221 122222333677777777543 47888887663
No 322
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=96.82 E-value=0.051 Score=57.78 Aligned_cols=232 Identities=8% Similarity=-0.016 Sum_probs=116.7
Q ss_pred EEEEEeC--CCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeCC----CcEEEEECCCCceeeE--e
Q 001403 402 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYS--F 473 (1084)
Q Consensus 402 ~las~~~--dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~--~ 473 (1084)
.++.|+. ...+.+||..+++-.. ...+......-..+. -+++ +++.|+.+ ..+.++|+.+++-... +
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~ 88 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLGP 88 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEECC
T ss_pred EEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCCC
Confidence 4455543 3458889988764221 111111111111222 2555 56667654 5788999888754322 2
Q ss_pred ccCCCcEEEEeecccCCCcEEEEEecC------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCC--
Q 001403 474 EGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-- 545 (1084)
Q Consensus 474 ~~h~~~v~~~~~~~~~~~~~l~s~s~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~-- 545 (1084)
......-..+.+ ++.+++.|+.+ ..+.+||..+..-...-..+.......+..-+++.++.++.+...
T Consensus 89 p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 89 PTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp SSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTT
T ss_pred CccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCc
Confidence 111111122222 44677777765 458888887654322211111111111122366677776654332
Q ss_pred ---CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCCCCCCCc
Q 001403 546 ---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPEN 617 (1084)
Q Consensus 546 ---~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v 617 (1084)
...+.+||+.+.+-...-.... .......+.+ +++.++.|+.+ ..+.+||..+.+....-...... .
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r--~ 239 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKG--V 239 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCB--S
T ss_pred ccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCc--c
Confidence 3558899998876543322111 1112222222 55666666543 46889999887765443222211 1
Q ss_pred ceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 618 PRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 618 ~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
...+..-++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 112222267788888743 568888887763
No 323
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.81 E-value=0.1 Score=55.63 Aligned_cols=229 Identities=10% Similarity=0.076 Sum_probs=120.4
Q ss_pred eCCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeC-----C------CeEEEEEcCCcee--eeeecccc
Q 001403 813 SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEV--ISKLEGHS 878 (1084)
Q Consensus 813 sdg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~-----d------g~i~iwd~~~~~~--~~~l~~h~ 878 (1084)
+...+.+||..+.+-.. .+..+.......+... ++++++.|+. . ..+.+||..+.+- +..+....
T Consensus 11 GG~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 89 (315)
T 4asc_A 11 SEEGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPR 89 (315)
T ss_dssp ETTEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCE
T ss_pred cCCceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcch
Confidence 34779999998876433 2222223333334444 6778888874 1 1378889887642 22222111
Q ss_pred cCEEEEEEcCCCCEEEEEeCC--------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-C
Q 001403 879 KRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E 948 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d 948 (1084)
..-..+.+ ++++++.||.+ ..+.+||..+.+-.....+... .....+..-++++++.| . +
T Consensus 90 ~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--------r~~~~~~~~~~~iyv~GG~~~ 159 (315)
T 4asc_A 90 CLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYV--------VYGHTVLSHMDLVYVIGGKGS 159 (315)
T ss_dssp ESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSC--------CBSCEEEEETTEEEEECCBCT
T ss_pred hceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCc--------ccceeEEEECCEEEEEeCCCC
Confidence 11122222 67777777743 4588999988653332211111 11122233566666664 3 2
Q ss_pred -----CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEEcCCCceeEEeccccccCCCC
Q 001403 949 -----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQCRILSTAYLRPTT 1018 (1084)
Q Consensus 949 -----~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~ 1018 (1084)
..+.+||..+.+-....... .......+..-+++.++.|+.++ .+.+||+.+.+....-. .+..
T Consensus 160 ~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~- 233 (315)
T 4asc_A 160 DRKCLNKMCVYDPKKFEWKELAPMQ-TARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQE- 233 (315)
T ss_dssp TSCBCCCEEEEETTTTEEEECCCCS-SCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSC-
T ss_pred CCcccceEEEEeCCCCeEEECCCCC-CchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCc-
Confidence 36899998876532211111 11111112233777888887664 48889999886653211 2221
Q ss_pred cccceeeeEEEECCCCCCEEEEEeCCC--------------cEEEEcCCCCCCCcccCCCCC
Q 001403 1019 SCLHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVLPPDE 1066 (1084)
Q Consensus 1019 ~~~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~vw~~~~~~~~~~~~~~~~ 1066 (1084)
....+++.. ++..++.|+.++ .+.+||+ ...+|...+|..
T Consensus 234 ----r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~~~~~ 287 (315)
T 4asc_A 234 ----RSSLSLVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNE--EEKKWEGVLREI 287 (315)
T ss_dssp ----CBSCEEEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEET--TTTEEEEEESCS
T ss_pred ----ccceeEEEE--CCEEEEECCccccCcCCccccccccCcEEEecC--CCChhhhhccCC
Confidence 111122222 367888888643 3566776 445688765443
No 324
>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*
Probab=96.72 E-value=0.33 Score=51.92 Aligned_cols=198 Identities=12% Similarity=0.089 Sum_probs=108.9
Q ss_pred eEEEEEcCCCCcEEEEE------------eCCCeEEEEEcCC--ceee-eeecc-----cccCEEEEEEcC--CCC-EEE
Q 001403 838 ATSLAFNPHDNNVIAIG------------MDDSTILIYNARS--SEVI-SKLEG-----HSKRVTGLVFSD--ALN-ILV 894 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g------------~~dg~i~iwd~~~--~~~~-~~l~~-----h~~~V~~l~~sp--d~~-~l~ 894 (1084)
.-.+++.| +|..+++. ..+|.|.++|..+ ++.. -.+.+ ..-....+.+.+ ++. +|.
T Consensus 52 ~EDi~~~~-~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~ 130 (355)
T 3sre_A 52 SEDLEILP-NGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLL 130 (355)
T ss_dssp CCEEEECT-TSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEE
T ss_pred cceeEEcC-CCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEE
Confidence 34556666 56444433 2689999999874 2211 12222 234667777766 454 343
Q ss_pred EE-eC--CCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEe----C--------------CeEEE
Q 001403 895 SS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----E--------------THLAI 953 (1084)
Q Consensus 895 s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----d--------------~~i~v 953 (1084)
.+ .. +.+|.+|+++.+.... ..+....+... .....+++.++|.+.++.. | +.|+-
T Consensus 131 Vvnh~~~~s~ielf~~d~~~~~~-~~~~~~~g~~~--~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 131 VVNHPGSSSTVEVFKFQEEEKSL-LHLKTIRHKLL--PSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEECSTTCCEEEEEEEETTTTEE-EEEEEECCTTC--SSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEECCCCCCeEEEEEEECCCCEE-EEEeccccCCC--CCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 33 22 4678888877643222 23333333221 3678999999999887742 1 34554
Q ss_pred EEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEEcCC-CceeEEeccccccCCCCcccceeeeEEEEC
Q 001403 954 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASN-LEVQCRILSTAYLRPTTSCLHVYPHAIAAH 1031 (1084)
Q Consensus 954 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1031 (1084)
+|. ++. ..... .-..-..++|||||++|+.+. ..+.|..|++.. |.+...-.. ..+ -.|=.++.+
T Consensus 208 ~d~--~~~-~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~--~~~-------g~PDGi~vD 274 (355)
T 3sre_A 208 YSP--NDV-RVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL--SFD-------TLVDNISVD 274 (355)
T ss_dssp ECT--TCC-EEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE--ECS-------SEEEEEEEC
T ss_pred EEC--CeE-EEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE--eCC-------CCCceEEEe
Confidence 544 332 22222 234678999999998877665 467899999864 443221110 111 123346677
Q ss_pred CCCCCEEEEEeCC-CcEEEEcC
Q 001403 1032 PLKPTQFAVGLTN-GEVYVIEP 1052 (1084)
Q Consensus 1032 p~d~~~l~~~~~d-g~v~vw~~ 1052 (1084)
+++|++.+++..+ +.|..|+.
T Consensus 275 ~e~G~lwva~~~~g~~v~~~~P 296 (355)
T 3sre_A 275 PVTGDLWVGCHPNGMRIFFYDA 296 (355)
T ss_dssp TTTCCEEEEEESCHHHHHSCCT
T ss_pred CCCCcEEEEecCCceEEEEECC
Confidence 6337777766544 34444443
No 325
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=96.72 E-value=0.4 Score=53.78 Aligned_cols=103 Identities=14% Similarity=0.137 Sum_probs=63.0
Q ss_pred CccEEEecCCCCEEEEEeC-CeEEEEEcCCceeE--EEEcC------CCCCeEEEEEcCC---CCcEEEEEeC-------
Q 001403 796 AVPCFALSKNDAYLFSASG-GVISLYIVMTFKTI--LTIMP------PSPTATSLAFNPH---DNNVIAIGMD------- 856 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sd-g~i~vwd~~~~~~~--~~~~~------~~~~i~~l~~s~~---d~~~la~g~~------- 856 (1084)
....++|.|||+++++-.. +.|.+++..+++.. ..+.. .......++|+|+ ++.+.++-+.
T Consensus 28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~ 107 (454)
T 1cru_A 28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD 107 (454)
T ss_dssp SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence 4569999999998887766 47888886655432 22321 2356779999994 3444443332
Q ss_pred -----CCeEEEEEcCCc-------eee-eeecc-cccCEEEEEEcCCCCEEEEEeC
Q 001403 857 -----DSTILIYNARSS-------EVI-SKLEG-HSKRVTGLVFSDALNILVSSGG 898 (1084)
Q Consensus 857 -----dg~i~iwd~~~~-------~~~-~~l~~-h~~~V~~l~~spd~~~l~s~s~ 898 (1084)
...|.-|+...+ +.+ ..+.. .......|+|.|||.+.++.+.
T Consensus 108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235666665432 112 11221 1123688999999998887664
No 326
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.59 E-value=0.093 Score=55.75 Aligned_cols=234 Identities=11% Similarity=0.067 Sum_probs=121.9
Q ss_pred cCCCCEEEEEe-----CCeEEEEEcCCceeEEE--EcCCCCCeEEEEEcCCCCcEEEEEeC----C-----CeEEEEEcC
Q 001403 803 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR 866 (1084)
Q Consensus 803 s~dg~~l~~~s-----dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~la~g~~----d-----g~i~iwd~~ 866 (1084)
.-++..++.|+ -..+.+||..+.+-... +....... +++. - ++++++.|+. + ..+.+||..
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 33566666665 14689999887653322 11111111 2222 2 5677777776 2 368899988
Q ss_pred Cce--eeeeecccccCEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC
Q 001403 867 SSE--VISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 867 ~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 939 (1084)
+.+ .+..+......-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+... .. ....+.+ +
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~----~~~~~~~--~ 168 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTR--RI----GVGVAVL--N 168 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSC--CB----SCEEEEE--T
T ss_pred CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcc--cc----ceEEEEE--C
Confidence 764 22222221122222233 67788877644 3588999988653332211111 11 1122222 6
Q ss_pred CCEEEEE-eC-----CeEEEEEcCCcceeeEeecCC-CCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEE
Q 001403 940 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1007 (1084)
Q Consensus 940 g~~la~~-~d-----~~i~vwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~ 1007 (1084)
+++++.| .+ ..+.+||..+.+-........ ...-..+. -+++.++.|+.+ ..+.+||+.+.+....
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 246 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV 246 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence 6666664 22 458999988765322111111 11112222 267777777765 5699999998866522
Q ss_pred eccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCC-----cEEEEcCCCCCCCcccCCC
Q 001403 1008 ILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1008 ~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg-----~v~vw~~~~~~~~~~~~~~ 1064 (1084)
- .++.. ....+++.. ++..++.|+.++ .+.+||+. ..+|...++
T Consensus 247 ~----~~p~~-----r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~ 295 (308)
T 1zgk_A 247 A----PMKHR-----RSALGITVH--QGRIYVLGGYDGHTFLDSVECYDPD--TDTWSEVTR 295 (308)
T ss_dssp C----CCSSC-----CBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETT--TTEEEEEEE
T ss_pred C----CCCCC-----ccceEEEEE--CCEEEEEcCcCCCcccceEEEEcCC--CCEEeecCC
Confidence 1 12221 111122222 367888887654 46778774 456876543
No 327
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=96.56 E-value=0.12 Score=64.10 Aligned_cols=234 Identities=13% Similarity=0.117 Sum_probs=144.7
Q ss_pred EEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-ceeeeeeccc
Q 001403 799 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH 877 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~-~~~~~~l~~h 877 (1084)
+.-.+|..+.+|.-.+.++.|||+++.+.+....- ...|.--.|-. .+.|+..+ +..|+-|++.. ..+++.+.-|
T Consensus 70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~ 145 (1630)
T 1xi4_A 70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH 145 (1630)
T ss_pred hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence 44567888888888888999999998877776653 34577777764 34566555 56799999974 3455555555
Q ss_pred ----ccCEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEE---ccCCCEE
Q 001403 878 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF 943 (1084)
Q Consensus 878 ----~~~V~~l~~spd~~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---s~dg~~l 943 (1084)
...|..-..+++.++++..| -.|.+.+|+++.+. -+..+||.. ....+.. .+....+
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~ 216 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF 216 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence 45788888899999988654 34788999988743 344555543 1112221 1122333
Q ss_pred EEEe----CCeEEEEEcCCc---cee------eEeecC--CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 944 LLVH----ETHLAIYEAEEL---TCL------KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 944 a~~~----d~~i~vwd~~~~---~~~------~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
+.+. .++++|.++... ... ...++. -..-..++..|+.-..+...+.-|.|.++|+.+|.++.+-
T Consensus 217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ 296 (1630)
T 1xi4_A 217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN 296 (1630)
T ss_pred EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence 3332 368888888543 111 011111 0222335666776667777788999999999999887443
Q ss_pred ccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCC
Q 001403 1009 LSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1009 ~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~ 1056 (1084)
. -+++.|+.. +.++. ..-++.....|.|.--.+.+..
T Consensus 297 r--------is~~~iF~~--~~~~~-~~g~~~vnr~G~vl~v~v~~~~ 333 (1630)
T 1xi4_A 297 R--------ISGETIFVT--APHEA-TAGIIGVNRKGQVLSVCVEEEN 333 (1630)
T ss_pred c--------ccCCceEEe--ccCCC-CCceEEEcCCceEEEEEEccch
Confidence 3 123445532 22221 2345555588888877776554
No 328
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=96.50 E-value=0.13 Score=54.91 Aligned_cols=225 Identities=10% Similarity=-0.022 Sum_probs=110.4
Q ss_pred CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC-----C------CcEEEEECCCCceeeEeccCCC
Q 001403 410 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTYSFEGHGA 478 (1084)
Q Consensus 410 g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~-----d------~~i~vwd~~~g~~~~~~~~h~~ 478 (1084)
..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+||..+++-.. +..-..
T Consensus 13 ~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~-~~~~p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG-MPPLPS 87 (315)
T ss_dssp TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE-CCCBSS
T ss_pred CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE-CCCCCc
Confidence 468899998875321 12221112222333344565 5566662 1 127788988775422 111111
Q ss_pred cEE--EEeecccCCCcEEEEEecC--------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCC--CCC
Q 001403 479 PVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--EGE 546 (1084)
Q Consensus 479 ~v~--~~~~~~~~~~~~l~s~s~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~--~~~ 546 (1084)
+-. +++. . ++.+++.|+.+ ..+.+||..+.+-...-..+.......+..-+++.++.++... ...
T Consensus 88 ~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 88 PRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp CEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred chhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 111 1111 1 44566666632 3478888876532221111111111112224566666666421 112
Q ss_pred eeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCC-----cEEEEECCCCeEEEEEcCCCCCCCcceEE
Q 001403 547 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGLPENPRIC 621 (1084)
Q Consensus 547 ~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 621 (1084)
..+.+||+.+.+-...-.... .......+.+ +++.++.|+.++ .+.+||..+.+....-..... .....+
T Consensus 165 ~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~ 239 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE--RSSLSL 239 (315)
T ss_dssp CCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--CBSCEE
T ss_pred ceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--ccceeE
Confidence 458999988775443221111 1112222222 566777777544 588999988876655332222 122222
Q ss_pred EecCCCEEEEEECC--------------CeEEEEEcCCCC
Q 001403 622 FNKNGTLLAVIANE--------------NRIKILETPESN 647 (1084)
Q Consensus 622 ~s~~~~~l~~~~~d--------------g~i~iwd~~~~~ 647 (1084)
..-++++++.|+.+ ..+.+||..+.+
T Consensus 240 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 279 (315)
T 4asc_A 240 VSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK 279 (315)
T ss_dssp EEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE
T ss_pred EEECCEEEEECCccccCcCCccccccccCcEEEecCCCCh
Confidence 23367777777753 236677877653
No 329
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=96.49 E-value=0.52 Score=52.34 Aligned_cols=115 Identities=16% Similarity=0.103 Sum_probs=78.5
Q ss_pred CCCccEEEecCCCCEEEEEe--CCeEEEEEcCCcee-------------EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCC
Q 001403 794 QEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 858 (1084)
Q Consensus 794 ~~~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~-------------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg 858 (1084)
......+.++|||+++++++ +.++.++|++.... ..... ..-.....+|.+ +|....+-.-|.
T Consensus 322 pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidS 399 (638)
T 3sbq_A 322 PKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDS 399 (638)
T ss_dssp SSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTT
T ss_pred CCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecc
Confidence 34556788999999999998 68899999874211 11222 344678899999 787777777999
Q ss_pred eEEEEEcCCc----------eeeeeecccccCEEEEEE------cCCCCEEEEEe---CCCc----------EEEEeCCC
Q 001403 859 TILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG---GDAQ----------IFVWDVDG 909 (1084)
Q Consensus 859 ~i~iwd~~~~----------~~~~~l~~h~~~V~~l~~------spd~~~l~s~s---~dg~----------I~iwd~~~ 909 (1084)
.|.-|++... ..+.++.-|-. +-.+.- .|||++|++.. .|+. -.+.|++.
T Consensus 400 qvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG 478 (638)
T 3sbq_A 400 QVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG 478 (638)
T ss_dssp EEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred eEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence 9999999763 34555554543 222333 47999999874 4543 36677765
Q ss_pred Cc
Q 001403 910 WG 911 (1084)
Q Consensus 910 ~~ 911 (1084)
.+
T Consensus 479 dk 480 (638)
T 3sbq_A 479 DE 480 (638)
T ss_dssp SS
T ss_pred Cc
Confidence 44
No 330
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=96.41 E-value=1.3 Score=47.14 Aligned_cols=100 Identities=11% Similarity=0.123 Sum_probs=58.5
Q ss_pred CccEEEecCCCCEEEEEe--CCeEEEEEcCCcee------------------EEEEcCCCCCeEEEEEcCCCCcEEEEEe
Q 001403 796 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~s--dg~i~vwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~la~g~ 855 (1084)
....++|+|+|.+.++-. ++.-.|--+..+.. +..+..+......++|.. +.++...-
T Consensus 203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l 280 (347)
T 3das_A 203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL 280 (347)
T ss_dssp BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence 456789999887666543 22222322222211 122222223556778874 55666666
Q ss_pred CCCeEEEEEcCCcee----eeeecccccCEEEEEEcCCCCEEEEEe
Q 001403 856 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG 897 (1084)
Q Consensus 856 ~dg~i~iwd~~~~~~----~~~l~~h~~~V~~l~~spd~~~l~s~s 897 (1084)
..+.|....+..+.. ...+.+..+.+..++..|||.++++.+
T Consensus 281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td 326 (347)
T 3das_A 281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS 326 (347)
T ss_dssp TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence 666777777765432 223444457899999999998877654
No 331
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.41 E-value=0.032 Score=54.09 Aligned_cols=142 Identities=7% Similarity=-0.056 Sum_probs=81.8
Q ss_pred CcEEEEEeCCCeEEEEEcCCcee-----eeeeccc--ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeee----e
Q 001403 848 NNVIAIGMDDSTILIYNARSSEV-----ISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC----R 916 (1084)
Q Consensus 848 ~~~la~g~~dg~i~iwd~~~~~~-----~~~l~~h--~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~----~ 916 (1084)
..+|++..+| +|+.=...++.. ..+-.++ =..+..++|+|||.+.+. .+|.+.--+..+...... .
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCE
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCccccccccc
Confidence 4566666777 666655444431 1111222 236779999999997777 667655555433221110 0
Q ss_pred eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcceee-----Eeec-CCCCCEEEEEEccCCCEEEEEeC
Q 001403 917 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-----QWFP-ISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 917 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~-----~~~~-~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
.+-.. +-. .-..+.|.|+|.+.++ .||.|+-++-.+..... .... .-=..+..|.|.|+|.+.++.
T Consensus 81 ~IG~~-Gw~----~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-- 152 (236)
T 1tl2_A 81 KIGNG-GWN----QFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-- 152 (236)
T ss_dssp EEECS-CGG----GCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--
T ss_pred Eeccc-ccc----cceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--
Confidence 11000 000 1368999999999999 78999888765422211 1110 012467999999999877765
Q ss_pred CCcEEEEEcC
Q 001403 991 DGTLSIHEAS 1000 (1084)
Q Consensus 991 dg~i~vwd~~ 1000 (1084)
|+.+.-+...
T Consensus 153 dg~lyr~~~P 162 (236)
T 1tl2_A 153 GQQFYKALPP 162 (236)
T ss_dssp TTEEEEECCC
T ss_pred CCcEEecCCC
Confidence 8876544444
No 332
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=96.37 E-value=0.049 Score=52.79 Aligned_cols=144 Identities=9% Similarity=0.013 Sum_probs=85.1
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeecccccC--------EEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR--------VTGLVFSDALNILVSSGGDAQIFVWDVD 908 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h~~~--------V~~l~~spd~~~l~s~s~dg~I~iwd~~ 908 (1084)
.+..++|+| ++.+.++ .+|.++-.+..+++.. .+.+-... -.++.|.|+|.+.++ .||.|.-++-.
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~-~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDND-NWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTC-CHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcc-cccccccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 567999999 8987777 6787777776552211 11111112 478999999999888 56988777753
Q ss_pred CCceeeee--eeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee-----eEeec-CCCCCEEEEEEcc
Q 001403 909 GWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----KQWFP-ISSVPISQATFSC 980 (1084)
Q Consensus 909 ~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~-----~~~~~-~h~~~v~~l~fs~ 980 (1084)
+....... ......+.-. .+..+.|.|+|.+-|+. ++.++-+...++... ..... +.-..-.-+.|++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~ 191 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSS 191 (236)
T ss_dssp CSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECT
T ss_pred cCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECC
Confidence 32211100 0000011111 47899999999999999 888665544432211 11111 2223444567888
Q ss_pred CCCEEEEEeCCC
Q 001403 981 DCRMVFTSFVDG 992 (1084)
Q Consensus 981 dg~~l~t~~~dg 992 (1084)
+|...++. +|
T Consensus 192 ~G~l~~v~--~g 201 (236)
T 1tl2_A 192 VGTLFGVQ--GG 201 (236)
T ss_dssp TSCEEEEE--TT
T ss_pred CCcEEEEe--CC
Confidence 88777665 66
No 333
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=96.35 E-value=0.12 Score=54.83 Aligned_cols=234 Identities=7% Similarity=-0.018 Sum_probs=115.7
Q ss_pred CCCCEEEEEeCC----CEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC----C-----CcEEEEEC
Q 001403 398 PDGSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----D-----KTIKVWDA 464 (1084)
Q Consensus 398 pdg~~las~~~d----g~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~----d-----~~i~vwd~ 464 (1084)
-++..++.|+.+ ..+.+||..+++-... ..+......- +++. -+++ +++.|+. + ..+.++|+
T Consensus 23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~-~~~p~~r~~~-~~~~-~~~~--lyv~GG~~~~~~~~~~~~~~~~~d~ 97 (308)
T 1zgk_A 23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRL-ADLQVPRSGL-AGCV-VGGL--LYAVGGRNNSPDGNTDSSALDCYNP 97 (308)
T ss_dssp CCCCEEEECCBSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSC-EEEE-ETTE--EEEECCEEEETTEEEECCCEEEEET
T ss_pred CCCEEEEEeCcCCCCcceEEEEcCCCCeEeEC-CCCCcccccc-eEEE-ECCE--EEEECCCcCCCCCCeecceEEEECC
Confidence 356666666632 3588888887642211 1111111111 1222 2455 5555654 2 46889998
Q ss_pred CCCceee--EeccCCCcEEEEeecccCCCcEEEEEecC-----CeEEEEECCCCCceEeecCC--CCeEEEEEEcCCCCE
Q 001403 465 VTGSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRR 535 (1084)
Q Consensus 465 ~~g~~~~--~~~~h~~~v~~~~~~~~~~~~~l~s~s~d-----g~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~d~~~ 535 (1084)
.+.+-.. .+......-..+.+ ++.+++.|+.+ ..+.+||..+.+-......+ ......+.+ +++.
T Consensus 98 ~~~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i 171 (308)
T 1zgk_A 98 MTNQWSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLL 171 (308)
T ss_dssp TTTEEEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEE
T ss_pred CCCeEeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEE
Confidence 8775322 11111111122222 44666666644 35778887764322211111 111122222 6666
Q ss_pred EEEEeeCCCC-CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEc
Q 001403 536 LFSCGTSKEG-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTID 609 (1084)
Q Consensus 536 l~~~~~~~~~-~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 609 (1084)
++.++.++.. ...+.+||+.+.+-...-.... .......+.+ ++..++.|+.+ ..+.+||+.+.+....-.
T Consensus 172 yv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 172 YAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 6776654322 3458899988776543221111 1122223333 56666667654 569999999877654432
Q ss_pred CCCCCCCcceEEEecCCCEEEEEECC-----CeEEEEEcCCCC
Q 001403 610 AGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETPESN 647 (1084)
Q Consensus 610 ~~~~~~~v~~v~~s~~~~~l~~~~~d-----g~i~iwd~~~~~ 647 (1084)
.... .....+..-++++++.|+.+ ..+.+||..+.+
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCCE
Confidence 2211 11222222367777777643 457788877653
No 334
>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A
Probab=96.29 E-value=0.32 Score=52.42 Aligned_cols=160 Identities=11% Similarity=0.038 Sum_probs=95.1
Q ss_pred cCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCC--CCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCcce---
Q 001403 887 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC--- 961 (1084)
Q Consensus 887 spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~--- 961 (1084)
+.+|..++.+ .++.||.-++..+. .-+.+.... .. ..+..+..||+|.+||..++..|.|..+..+..
T Consensus 29 ~~n~t~i~~a-~~n~iR~~~i~~~~--~Yk~L~~~~~i~f----~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~ 101 (452)
T 3pbp_A 29 SQNGTRIVFI-QDNIIRWYNVLTDS--LYHSLNFSRHLVL----DDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVE 101 (452)
T ss_dssp ETTTTEEEEE-ETTEEEEEETTTCS--SCEEEECTTTCCC----CTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCC
T ss_pred EcCCCEEEEE-ECCEEEEEECCCCC--cceEEecCccccc----CceeEEEECCCCCEEEEecCCeEEEEEecCccccCc
Confidence 3455556554 34667777776432 122333321 11 147889999999999999999999999873321
Q ss_pred ---------eeEeecC-----CCCCEEEEEEcc---CCCEEEEEeCCCcEEEEEcCCCcee-EEeccc-cccCCCCcccc
Q 001403 962 ---------LKQWFPI-----SSVPISQATFSC---DCRMVFTSFVDGTLSIHEASNLEVQ-CRILST-AYLRPTTSCLH 1022 (1084)
Q Consensus 962 ---------~~~~~~~-----h~~~v~~l~fs~---dg~~l~t~~~dg~i~vwd~~~~~~~-~~~~~~-~~~~~~~~~~~ 1022 (1084)
.+.+.-+ ...+|..+.|.| .|..|++-..|+.||+||+....-. ..+... .......+.
T Consensus 102 ~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~-- 179 (452)
T 3pbp_A 102 DVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARV-- 179 (452)
T ss_dssp CHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSC--
T ss_pred ccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCccc--
Confidence 1111211 257899999998 4678999999999999999973211 011100 000101011
Q ss_pred eeeeEEEECCCCCCEEEEEe--CCCcEEEEcCCCCC
Q 001403 1023 VYPHAIAAHPLKPTQFAVGL--TNGEVYVIEPNEPG 1056 (1084)
Q Consensus 1023 v~~~~~~~~p~d~~~l~~~~--~dg~v~vw~~~~~~ 1056 (1084)
-...+++|.+ ++-.|-+.+ ..|.|+-.-+--..
T Consensus 180 ~ev~S~~Fg~-~~lTLYvl~~t~~GDIYAlcP~LP~ 214 (452)
T 3pbp_A 180 NDITDLEFSK-DGLTLYCLNTTEGGDIFAFYPFLPS 214 (452)
T ss_dssp CCEEEEEECT-TSSCEEEEECTTSCEEEEESSCCCS
T ss_pred ceEEEEEEcC-CCcEEEEEecCCCCCEEEECCCCcc
Confidence 2234677776 455555544 67777766554433
No 335
>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A
Probab=96.11 E-value=0.0049 Score=49.38 Aligned_cols=35 Identities=34% Similarity=0.569 Sum_probs=32.5
Q ss_pred CCchhHHHHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001403 1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY 35 (1084)
Q Consensus 1 ~~~~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~ 35 (1084)
|+....||..||-.||+|.||..||-+|++||++.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 78889999999999999999999999999999874
No 336
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=96.01 E-value=0.31 Score=52.96 Aligned_cols=241 Identities=12% Similarity=0.043 Sum_probs=116.8
Q ss_pred CCCEEEEEe--CCeEEEEEcCC----ceeEEEEc-CCCCCeEEEEEcCCCCcEEEEEeC-C---------CeEEEEEcCC
Q 001403 805 NDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNARS 867 (1084)
Q Consensus 805 dg~~l~~~s--dg~i~vwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~la~g~~-d---------g~i~iwd~~~ 867 (1084)
+++.++.|+ ...+.+||..+ .+.+..+. .....-.++.+ ++++++.|+. + ..+.+||..+
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~ 95 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKT 95 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCCC
Confidence 667767665 46799999864 22222222 11112222223 5678887776 2 4689999987
Q ss_pred ce--eeeeec-ccccCEEEEEEcCCCCEEEEEeCC---------------------------------------CcEEEE
Q 001403 868 SE--VISKLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFVW 905 (1084)
Q Consensus 868 ~~--~~~~l~-~h~~~V~~l~~spd~~~l~s~s~d---------------------------------------g~I~iw 905 (1084)
.+ .+..+. .....-.++. .++++++.|+.+ ..+.+|
T Consensus 96 ~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 173 (357)
T 2uvk_A 96 NSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSF 173 (357)
T ss_dssp TEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEE
T ss_pred CcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEE
Confidence 54 222222 1111122222 578888888865 468899
Q ss_pred eCCCCceeeeeeeecCCCCccCCCCc-eEEEEccCCCEEEEE-e------CCeEEEEEc--CCcceeeEe-ecCCCCCEE
Q 001403 906 DVDGWGIQTCRSLQTPDGVMTLAPSE-THIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPIS 974 (1084)
Q Consensus 906 d~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~s~dg~~la~~-~------d~~i~vwd~--~~~~~~~~~-~~~h~~~v~ 974 (1084)
|..+.+-.....+.... .. .+++. -++++++.| . ...+..||+ .+.+-.... .........
T Consensus 174 d~~~~~W~~~~~~p~~~-------~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 174 DPSTQQWSYAGESPWYG-------TAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp ETTTTEEEEEEECSSCC-------CBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred eCCCCcEEECCCCCCCC-------cccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 99886543322221111 11 12222 356666663 2 235777876 333221110 110111112
Q ss_pred EEEEccCCCEEEEEeCC----------------------CcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECC
Q 001403 975 QATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHP 1032 (1084)
Q Consensus 975 ~l~fs~dg~~l~t~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p 1032 (1084)
..+...+++.++.|+.+ ..+.+||+.+.+....- .++.. .....++..
T Consensus 246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~----r~~~~~~~~-- 315 (357)
T 2uvk_A 246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSG----ELSQG----RAYGVSLPW-- 315 (357)
T ss_dssp CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEE----ECSSC----CBSSEEEEE--
T ss_pred ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCC----CCCCC----cccceeEEe--
Confidence 22334467777777632 25788999987665321 12222 111122333
Q ss_pred CCCCEEEEEeCCCc----EEEEcCCCCCCCcccCCCCCccc
Q 001403 1033 LKPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEIVG 1069 (1084)
Q Consensus 1033 ~d~~~l~~~~~dg~----v~vw~~~~~~~~~~~~~~~~~~~ 1069 (1084)
++..++.|+.++. --+|-+.-.+.+|....|..-++
T Consensus 316 -~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~~~ 355 (357)
T 2uvk_A 316 -NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHHHH 355 (357)
T ss_dssp -TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC------
T ss_pred -CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccccc
Confidence 3688899997642 23554444677788877766443
No 337
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=96.00 E-value=0.44 Score=50.67 Aligned_cols=224 Identities=10% Similarity=0.009 Sum_probs=107.6
Q ss_pred EEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC----CC-------cEEEEECCCCceee--EeccCC
Q 001403 411 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTY--SFEGHG 477 (1084)
Q Consensus 411 ~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~----d~-------~i~vwd~~~g~~~~--~~~~h~ 477 (1084)
.+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++|..+++-.. .+....
T Consensus 25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r 100 (318)
T 2woz_A 25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR 100 (318)
T ss_dssp EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence 37888888765322 11211111122223344555 5666662 11 17788987765432 111111
Q ss_pred CcEEEEeecccCCCcEEEEEecC-------CeEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCC--CCee
Q 001403 478 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF 548 (1084)
Q Consensus 478 ~~v~~~~~~~~~~~~~l~s~s~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~--~~~~ 548 (1084)
.....+.+ ++.+++.|+.+ ..+.+||..+.+-...-..+.......+...+++.++.++.... ....
T Consensus 101 ~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 101 CLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp CSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred cccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 11112222 44677777754 24677777654322221112111111122256677777664221 1345
Q ss_pred EEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC-----CcEEEEECCCCeEEEEEcCCCCCCCcceEEEe
Q 001403 549 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 623 (1084)
Q Consensus 549 i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 623 (1084)
+.+||+.+.+-...-.... .......+.+ +++.++.|+.+ ..+.+||..+.+....-..... .....+..
T Consensus 177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~ 251 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS 251 (318)
T ss_dssp EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence 8999998876543321111 1112222222 56666777643 3577899988765544322211 12222233
Q ss_pred cCCCEEEEEECC--------------CeEEEEEcCCCC
Q 001403 624 KNGTLLAVIANE--------------NRIKILETPESN 647 (1084)
Q Consensus 624 ~~~~~l~~~~~d--------------g~i~iwd~~~~~ 647 (1084)
-++++++.|+.+ ..+.+||..+.+
T Consensus 252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~ 289 (318)
T 2woz_A 252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKE 289 (318)
T ss_dssp ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTE
T ss_pred ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCE
Confidence 456777777653 356777777653
No 338
>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}
Probab=95.87 E-value=2.3 Score=45.16 Aligned_cols=119 Identities=15% Similarity=0.095 Sum_probs=67.7
Q ss_pred ceeeecccCCCCceEEEEcCCCceeeeecccccCccccccceEEEEEcCCcccccee---eeecCCCCCeEEEEEcCC--
Q 001403 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKT---ALVRDPGVSVNRVVWSPD-- 399 (1084)
Q Consensus 325 ~~~~~l~~h~~~V~~v~~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~---~~~~~h~~~V~~v~fspd-- 399 (1084)
....++...-...+.++|.|||+++++-... +.|++++..++...... .+..........++|+||
T Consensus 22 ~~~~~va~gL~~P~~ia~~pdG~llVter~~---------G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~ 92 (347)
T 3das_A 22 KVLRTVATGLNSPWGLAPLPGGDLLVSSRDE---------ATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYA 92 (347)
T ss_dssp EEEEEEECCCSSEEEEEECTTSCEEEEETTT---------CEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHH
T ss_pred ceeEEeecCCCCceEEEEcCCCcEEEEEecC---------CEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccc
Confidence 3445555555689999999999988884222 77888876543321111 112234567899999995
Q ss_pred -CCEEEEE-e--CCCEEEEEEccCCc----cc---ccee-eee-cccccEeEEEeecCCCcEEEEEEe
Q 001403 400 -GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQL-EID-AHVGNVNDLAFSAPCKQISVITCG 454 (1084)
Q Consensus 400 -g~~las~-~--~dg~v~iwd~~~~~----~~---~~~~-~l~-~h~~~V~~l~~s~d~~~l~l~s~~ 454 (1084)
+.+|... + .++.|.-|.+..+. .+ +.+. .+. +....-..|+|.|||. +.++.+
T Consensus 93 ~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G 158 (347)
T 3das_A 93 SDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG 158 (347)
T ss_dssp HHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred cCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence 3444433 2 34557777766521 11 1111 111 1112345799999997 555543
No 339
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=95.83 E-value=0.043 Score=58.21 Aligned_cols=201 Identities=9% Similarity=0.030 Sum_probs=107.7
Q ss_pred cEEEEEeCCCeEEEEEcCCceeeeeeccc-ccCEEEEEE--cC-CCCEEEEE-eCCCcEEEEeCCCCceeeeeeeecCCC
Q 001403 849 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG 923 (1084)
Q Consensus 849 ~~la~g~~dg~i~iwd~~~~~~~~~l~~h-~~~V~~l~~--sp-d~~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~ 923 (1084)
.++++++.||.|+-+|..+|+.+.+++.. ..++....- .+ ++..++.. +.||.|..++..+|..+....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47888999999999999999999888754 122222110 01 33334333 589999999998875432222211111
Q ss_pred CccCCCCceE---E------EEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCC------EEEEEEc-----cCCC
Q 001403 924 VMTLAPSETH---I------QFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR 983 (1084)
Q Consensus 924 ~~~~~~~v~~---~------~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~ 983 (1084)
.. ++.. . ..+.+|..++.+.++++.-.|+.+|+.+.++..+.... ..+.... ..+.
T Consensus 91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence 00 1110 0 01245555555789999999999999998865442111 1111111 1235
Q ss_pred EEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCCCCCCc
Q 001403 984 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1059 (1084)
Q Consensus 984 ~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~~~~~~ 1059 (1084)
.|+.+..+..+.+.+ .+|+ +..+....+.+.... ..+.. ....+. |+.. ++++.||.|..+|.......|
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~-~~~~~-~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD-VPLAL-QNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT-HHHHT-TCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccc-ccccc-cccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777777777777 4554 333222222222100 00000 000111 3444 557888888888877666667
No 340
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=95.53 E-value=1.3 Score=55.30 Aligned_cols=88 Identities=8% Similarity=0.035 Sum_probs=55.2
Q ss_pred CeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecC
Q 001403 546 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 625 (1084)
Q Consensus 546 ~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 625 (1084)
...|.|.|+.++..+.+-+- ..-+.-.+|..+.++.-. ..++.|+|+.+...++....... |.--.|-.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi------~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~---VvfWkWis- 115 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI------SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD---VTFWKWIS- 115 (1630)
T ss_pred CceEEEEECCCCCCcccccc------cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC---ceEEEecC-
Confidence 44688888887654322111 123345678777666543 68999999999888888766443 44444443
Q ss_pred CCEEEEEECCCeEEEEEcCC
Q 001403 626 GTLLAVIANENRIKILETPE 645 (1084)
Q Consensus 626 ~~~l~~~~~dg~i~iwd~~~ 645 (1084)
.+.|+..+. ..|.-|++..
T Consensus 116 ~~~l~lVT~-~aVyHW~~~~ 134 (1630)
T 1xi4_A 116 LNTVALVTD-NAVYHWSMEG 134 (1630)
T ss_pred CCeeEEEcC-CeEEEeccCC
Confidence 344555443 5899999864
No 341
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=95.49 E-value=0.84 Score=48.43 Aligned_cols=224 Identities=13% Similarity=0.112 Sum_probs=115.4
Q ss_pred CCeEEEEEcCCceeEE-EEcCCCCCeEEEEEcCCCCcEEEEEeC----CC-------eEEEEEcCCcee--eeeeccccc
Q 001403 814 GGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD----DS-------TILIYNARSSEV--ISKLEGHSK 879 (1084)
Q Consensus 814 dg~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~la~g~~----dg-------~i~iwd~~~~~~--~~~l~~h~~ 879 (1084)
...+..||..+.+-.. .+..........+... ++.+++.|+. ++ .+.+||..+.+- +..+.....
T Consensus 23 G~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~ 101 (318)
T 2woz_A 23 DTAAVAYDPMENECYLTALAEQIPRNHSSIVTQ-QNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARC 101 (318)
T ss_dssp SSEEEEEETTTTEEEEEEECTTSCSSEEEEECS-SSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBC
T ss_pred ccceEEECCCCCceecccCCccCCccceEEEEE-CCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccc
Confidence 3458899998776443 2222222223333444 6788888883 12 277888877542 222222111
Q ss_pred CEEEEEEcCCCCEEEEEeCC-------CcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEE-e-C--
Q 001403 880 RVTGLVFSDALNILVSSGGD-------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E-- 948 (1084)
Q Consensus 880 ~V~~l~~spd~~~l~s~s~d-------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d-- 948 (1084)
.-..+.+ ++++++.|+.+ ..+.+||..+.+-.....+.. .. ....+...++++++.| . +
T Consensus 102 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r------~~~~~~~~~~~iyv~GG~~~~~ 171 (318)
T 2woz_A 102 LFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KV------YGHNVISHNGMIYCLGGKTDDK 171 (318)
T ss_dssp SCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CE------ESCEEEEETTEEEEECCEESSS
T ss_pred ccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cc------cccEEEEECCEEEEEcCCCCCC
Confidence 1222222 67888888864 347888988765333211111 11 1112222567766664 2 1
Q ss_pred ---CeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEEcCCCceeEEeccccccCCCCcc
Q 001403 949 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYLRPTTSC 1020 (1084)
Q Consensus 949 ---~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1020 (1084)
..+.+||..+.+-...........-.+++ .-+++.++.|+.+ ..+.+||+.+.+....- .++..
T Consensus 172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~p~~--- 243 (318)
T 2woz_A 172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT----EFPQE--- 243 (318)
T ss_dssp CBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEETTEEEEEEEEEETTTCCEEECC----CCSSC---
T ss_pred CccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEEEEEcCcCCCCccceEEEEECCCCeEEECC----CCCCc---
Confidence 35999999876533221111111111222 2367777777654 35778999888665321 12221
Q ss_pred cceeeeEEEECCCCCCEEEEEeCCC--------------cEEEEcCCCCCCCcccC
Q 001403 1021 LHVYPHAIAAHPLKPTQFAVGLTNG--------------EVYVIEPNEPGDTWAVL 1062 (1084)
Q Consensus 1021 ~~v~~~~~~~~p~d~~~l~~~~~dg--------------~v~vw~~~~~~~~~~~~ 1062 (1084)
....+++.. ++..++.|+.++ .+.+||+ ...+|...
T Consensus 244 --r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~--~~~~W~~~ 293 (318)
T 2woz_A 244 --RSSISLVSL--AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYED--DKKEWAGM 293 (318)
T ss_dssp --CBSCEEEEE--TTEEEEECCBCCBC----CCBCCBCCCEEEEET--TTTEEEEE
T ss_pred --ccceEEEEE--CCEEEEECCeeccCCCCceeccceeeeEEEEeC--CCCEehhh
Confidence 111122222 367888887653 4677777 44568766
No 342
>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A
Probab=95.44 E-value=2.1 Score=47.87 Aligned_cols=112 Identities=11% Similarity=0.072 Sum_probs=63.5
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccC---CCEEEEE--e------
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV--H------ 947 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d---g~~la~~--~------ 947 (1084)
...++|+|.|||+++++-...+.|++++..++.......+...............++|+|| +.+|.++ .
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 3567999999999888754445788888765543221111111000001235779999996 5555543 2
Q ss_pred ------CCeEEEEEcCCc-------ceeeE-eecCCCCCEEEEEEccCCCEEEEEeC
Q 001403 948 ------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV 990 (1084)
Q Consensus 948 ------d~~i~vwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~ 990 (1084)
...|.-++...+ +.+.. +..........|+|.|||.+.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 234655655322 11211 11111235789999999988777654
No 343
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=95.20 E-value=0.42 Score=51.83 Aligned_cols=242 Identities=9% Similarity=-0.025 Sum_probs=112.3
Q ss_pred CCCEEEEEeCC-CEEEEEEccCC-ccccceeeee-cccccEeEEEeecCCCcEEEEEEeC-C---------CcEEEEECC
Q 001403 399 DGSLLGVAYSK-HIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGD-D---------KTIKVWDAV 465 (1084)
Q Consensus 399 dg~~las~~~d-g~v~iwd~~~~-~~~~~~~~l~-~h~~~V~~l~~s~d~~~l~l~s~~~-d---------~~i~vwd~~ 465 (1084)
+++.++.|+.+ ..+.++|..+. ..-.....+. .....-.++.+ +++ +++.|+. + ..+.+||+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~--lyv~GG~~~~~~~~~~~~~~v~~yd~~ 94 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGN--LYVFGGIGKNSEGLTQVFNDVHKYNPK 94 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTE--EEEECCEEECTTSCEEECCCEEEEETT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCE--EEEEcCCCCCCCccceeeccEEEEeCC
Confidence 66677777543 46888888641 1111111111 01111112222 455 5555654 2 468899988
Q ss_pred CCceee--Eec-cCCCcEEEEeecccCCCcEEEEEecC---------------------------------------CeE
Q 001403 466 TGSRTY--SFE-GHGAPVYSLCPHAKENIHFIFSISVD---------------------------------------GKI 503 (1084)
Q Consensus 466 ~g~~~~--~~~-~h~~~v~~~~~~~~~~~~~l~s~s~d---------------------------------------g~i 503 (1084)
+.+-.. .+. .....-.++.+ ++.+++.|+.+ ..+
T Consensus 95 ~~~W~~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 170 (357)
T 2uvk_A 95 TNSWVKLMSHAPMGMAGHVTFVH----NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFL 170 (357)
T ss_dssp TTEEEECSCCCSSCCSSEEEEEE----TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEE
T ss_pred CCcEEECCCCCCcccccceEEEE----CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccE
Confidence 765332 111 11111122222 45677777754 468
Q ss_pred EEEECCCCCceEeecCCC-CeE-EEEEEcCCCCEEEEEeeCCCC--CeeEEEecC--CCceEeeeeeccccccCceEEEE
Q 001403 504 KAWLYDSLGARVDYDAPG-LGC-TRMAYSANGRRLFSCGTSKEG--ESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVH 577 (1084)
Q Consensus 504 ~iwd~~~~~~~~~~~~~~-~~i-~~~~~s~d~~~l~~~~~~~~~--~~~i~~wd~--~~~~~~~~~~~~~~~~~~v~~~~ 577 (1084)
.+||..+..-...-.... ... .+++. -+++.++.++.+..+ ...+..||+ .+.+-...-.... ........+
T Consensus 171 ~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~-~~~~~~~~~ 248 (357)
T 2uvk_A 171 LSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS-PDGVAGGFA 248 (357)
T ss_dssp EEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST-TTCCBSCEE
T ss_pred EEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC-CcccccceE
Confidence 888887654322221111 111 22222 356666666543221 234677776 4443322111110 011111112
Q ss_pred EcCCCCEEEEEECC----------------------CcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 578 FDTAKDQILAAGDD----------------------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 578 ~s~~~~~l~~~~~d----------------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
...+++.++.|+.+ ..+.+||+.+.+....-..... .....+...++++++.|+.+
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~ 326 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG--RAYGVSLPWNNSLLIIGGET 326 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC--CBSSEEEEETTEEEEEEEEC
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC--cccceeEEeCCEEEEEeeeC
Confidence 22355666666532 2578899987765544332222 22233444578888888864
Q ss_pred C------eEEEEEcCCCCeeeec
Q 001403 636 N------RIKILETPESNSVDAA 652 (1084)
Q Consensus 636 g------~i~iwd~~~~~~~~~~ 652 (1084)
+ .+.++++.+++.+...
T Consensus 327 ~~~~~~~~v~~l~~~~~~~~~~~ 349 (357)
T 2uvk_A 327 AGGKAVTDSVLITVKDNKVTVQN 349 (357)
T ss_dssp GGGCEEEEEEEEEC-CCSCEEEC
T ss_pred CCCCEeeeEEEEEEcCcEeEeee
Confidence 2 4566688777665443
No 344
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=94.86 E-value=1.4 Score=48.95 Aligned_cols=195 Identities=12% Similarity=0.122 Sum_probs=113.8
Q ss_pred CCCCEEEEEe--CCeEEEEEcCCceeEEEEcCC-CCCeEEEEEc--CCCCcEEEEEeC-------CCeE---------EE
Q 001403 804 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI 862 (1084)
Q Consensus 804 ~dg~~l~~~s--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~la~g~~-------dg~i---------~i 862 (1084)
.||+||..-. +..|...++...++-..+.-+ ...+..++|- | +..+++.+++ ||.. -+
T Consensus 140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~ 218 (638)
T 3sbq_A 140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM 218 (638)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence 3789999887 577888999988876665543 4577788886 6 5667776654 2221 11
Q ss_pred ---EEcCCceeeeeecccccCEEEEEEcCCCCEEEEEeCCCc---------------EEEEeCCC-------Cceeee--
Q 001403 863 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ---------------IFVWDVDG-------WGIQTC-- 915 (1084)
Q Consensus 863 ---wd~~~~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~---------------I~iwd~~~-------~~~~~~-- 915 (1084)
.|..+.+...++.- .+..-.+...++|++.++.+.+.. +.++++.. |+....
T Consensus 219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g 297 (638)
T 3sbq_A 219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD 297 (638)
T ss_dssp EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence 12222222221110 112223455677888887765422 55555431 111111
Q ss_pred ---eeeecCC----CCc-----cCCCCceEEEEccCCCEEEEE--eCCeEEEEEcCCcce-------------eeEeecC
Q 001403 916 ---RSLQTPD----GVM-----TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI 968 (1084)
Q Consensus 916 ---~~~~~~~----~~~-----~~~~~v~~~~~s~dg~~la~~--~d~~i~vwd~~~~~~-------------~~~~~~~ 968 (1084)
.++.... +.. ........+.++|||++++++ -+.++.++|++.... ..+..
T Consensus 298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-- 375 (638)
T 3sbq_A 298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-- 375 (638)
T ss_dssp CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence 1111111 000 111245678999999999995 567899999874221 11211
Q ss_pred CCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCC
Q 001403 969 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1002 (1084)
Q Consensus 969 h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~ 1002 (1084)
-.......+|.++|.-..|-.-|..|.-|++...
T Consensus 376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 1446678999999955555568999999999864
No 345
>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1
Probab=94.71 E-value=0.019 Score=45.68 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhhhcChHHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhccc
Q 001403 5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
++|+-+-|++||...||.+++.+|.+|.++..+ ...=..-+++-+|..++.+-+++
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQKKI 67 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQKKV 67 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHHHH
Confidence 578999999999999999999999999998875 22234567777887777765543
No 346
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=94.32 E-value=5.9 Score=41.28 Aligned_cols=214 Identities=7% Similarity=0.070 Sum_probs=117.7
Q ss_pred EcCCCCEEEEEe--CCCEEEEEEccCCccccceeeeecccccEeEEEeecCCCcEEEEEEeC------------CCcEEE
Q 001403 396 WSPDGSLLGVAY--SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------------DKTIKV 461 (1084)
Q Consensus 396 fspdg~~las~~--~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~------------d~~i~v 461 (1084)
|+.+|.+|.... .++.|...+.+... .. .+... .+--++++|+.++.+.-.. ...|+.
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~-~~---~l~~~----~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~ 92 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSN-IH---KLSND----TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCR 92 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCS-CE---EEEEE----EEEEEEECSSEEEEEEECC------CCSSCCSEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCC-CE---EccCC----ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEE
Confidence 446788888775 35666666665543 22 23222 1345688999533332221 246777
Q ss_pred EECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEe--cCC--eEEEEECCCCCceEeecCCCCeEEEEEEcCCCCEEE
Q 001403 462 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 537 (1084)
Q Consensus 462 wd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s--~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~ 537 (1084)
.++..++.. .+... ... .+++ +++.|+-.. .++ .|..-+++........ .+.. .+++++++.|+
T Consensus 93 i~~dg~~~~-~l~~~--~~~--~~s~--~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt-~~~~----~~~~~~g~~iy 160 (302)
T 3s25_A 93 IKRNGHGST-VLDPD--PCI--YASL--IGNYIYYLHYDTQTATSLYRIRIDGEEKKKIK-NHYL----FTCNTSDRYFY 160 (302)
T ss_dssp EETTSCCCE-EEECS--CEE--EEEE--ETTEEEEEEESSSSCEEEEEEETTSCCCEEEE-SSCC----CCSEEETTEEE
T ss_pred EeCCCCcce-EeecC--Ccc--EEEE--eCCEEEEEeecCCCCceEEEEECCCCCeEEEe-CCCc----eEeeEECCEEE
Confidence 787766532 23211 222 3333 445666554 333 4555555543333322 2221 45788999998
Q ss_pred EEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECC--CcEEEEECCCCeEEEEEcCCCCCC
Q 001403 538 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD--HVIKIWDMNKVQLLTTIDAGGGLP 615 (1084)
Q Consensus 538 ~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d--g~i~iwd~~~~~~~~~~~~~~~~~ 615 (1084)
..+. +...|+..++..+.....+.+. .. ..+.|++.+|+-.... ..|..-++..+.. ..+.. .
T Consensus 161 ~t~~---g~~~Iy~~~l~g~~~~~l~~~~------~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~-~~Lt~-~--- 225 (302)
T 3s25_A 161 YNNP---KNGQLYRYDTASQSEALFYDCN------CY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP-VVLTE-A--- 225 (302)
T ss_dssp EECT---TTCCEEEEETTTTEEEEEECSC------EE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC-EECSC-S---
T ss_pred EEeC---CCceEEEEECCCCCEEEEeCCC------cc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe-EEEeC-C---
Confidence 7753 4667999998877655444321 22 2356899988876543 3566666665543 33321 1
Q ss_pred CcceEEEecCCCEEEEEEC--CCeEEEEEcCCC
Q 001403 616 ENPRICFNKNGTLLAVIAN--ENRIKILETPES 646 (1084)
Q Consensus 616 ~v~~v~~s~~~~~l~~~~~--dg~i~iwd~~~~ 646 (1084)
.+ ..|+|++..|..+.. .+.|..-++...
T Consensus 226 ~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~ 256 (302)
T 3s25_A 226 NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT 256 (302)
T ss_dssp CE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred Cc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence 12 458888888876643 356666666543
No 347
>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}
Probab=93.75 E-value=0.15 Score=54.09 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=103.2
Q ss_pred EEEEEeCCCcEEEEECCCCceeeEeccC-CCcEEEEeecc-cCCCcEEEEE-ecCCeEEEEECCCCCceEeecCC----C
Q 001403 449 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHA-KENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G 521 (1084)
Q Consensus 449 ~l~s~~~d~~i~vwd~~~g~~~~~~~~h-~~~v~~~~~~~-~~~~~~l~s~-s~dg~i~iwd~~~~~~~~~~~~~----~ 521 (1084)
+++.++.||.|.-.|.++|+.+-++... ..++....-.. ..++..++.. +.||.+..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 5788889999999999999998888654 12222221111 1133333333 68999999988766444332211 1
Q ss_pred CeEEE---EEE-----cCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCc-----eEEEEEc-----CCCC
Q 001403 522 LGCTR---MAY-----SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD 583 (1084)
Q Consensus 522 ~~i~~---~~~-----s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~-----v~~~~~s-----~~~~ 583 (1084)
.++.. ..+ +..+..+++++. ++.+...|+.+|+.+..+...... .. ..+.... ..+.
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~ 166 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN 166 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence 11111 000 014556667665 777999999999999888653210 10 0111110 1235
Q ss_pred EEEEEECCCcEEEEECCCCeEEEEE-----cCCCCCCCc-ceEEEecCCCEEEEEECCCeEEEEEcCCCCeee
Q 001403 584 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD 650 (1084)
Q Consensus 584 ~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~ 650 (1084)
.++.+..+..+.+.+ ++|+ ...+ ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus 167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence 677777666666655 3343 2111 100000000 00011234555 457889999999998887654
No 348
>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}
Probab=92.99 E-value=9.8 Score=39.57 Aligned_cols=169 Identities=8% Similarity=0.057 Sum_probs=95.9
Q ss_pred eecCCCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecC--------------CeEEEE
Q 001403 441 FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD--------------GKIKAW 506 (1084)
Q Consensus 441 ~s~d~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d--------------g~i~iw 506 (1084)
|+.++..+++.....++.|...+.. |.....+... .+..+ + .++.+|+-+... ..|+..
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~d-g~~~~~l~~~--~~~~i--~--~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i 93 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNID-GSNIHKLSND--TAMYI--N--ADKNYVYYVRNNNQKITSQTFFSYDRNSLCRI 93 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETT-SCSCEEEEEE--EEEEE--E--ECSSEEEEEEECC------CCSSCCSEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCC-CCCCEEccCC--ceeeE--E--EcCCEEEEEECCCCcccccceeccCCCeEEEE
Confidence 3456775444433445666666643 3334444321 12222 2 244566555432 356777
Q ss_pred ECCCCCceEeecCCCCeEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEE
Q 001403 507 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL 586 (1084)
Q Consensus 507 d~~~~~~~~~~~~~~~~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 586 (1084)
+++..+........ +..+++++++|+....+.++...|+..++..... ..+..+. + ..++++++.|+
T Consensus 94 ~~dg~~~~~l~~~~-----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~-~~lt~~~-----~--~~~~~~g~~iy 160 (302)
T 3s25_A 94 KRNGHGSTVLDPDP-----CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEK-KKIKNHY-----L--FTCNTSDRYFY 160 (302)
T ss_dssp ETTSCCCEEEECSC-----EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCC-EEEESSC-----C--CCSEEETTEEE
T ss_pred eCCCCcceEeecCC-----ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCe-EEEeCCC-----c--eEeeEECCEEE
Confidence 77766543332221 2367889999998762234567788888875443 3343333 1 35678888888
Q ss_pred EEEC-CCcEEEEECCCCeEEEEEcCCCCCCCcceEEEecCCCEEEEEECC
Q 001403 587 AAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 635 (1084)
Q Consensus 587 ~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d 635 (1084)
-.+. ...|++-++..+.....+. +. . ...+.|++.+|+-....
T Consensus 161 ~t~~g~~~Iy~~~l~g~~~~~l~~--~~---~-~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 161 YNNPKNGQLYRYDTASQSEALFYD--CN---C-YKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp EECTTTCCEEEEETTTTEEEEEEC--SC---E-EEEEEEETTEEEEEEGG
T ss_pred EEeCCCceEEEEECCCCCEEEEeC--CC---c-cceeeecCCEEEEEEcC
Confidence 7665 6788888887776554443 11 1 23466888888776543
No 349
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=92.64 E-value=14 Score=40.30 Aligned_cols=260 Identities=11% Similarity=0.057 Sum_probs=121.8
Q ss_pred CCCccEEEecC--CCCEEEEEeCC----eEEEEEcCCceeEEEEcC--------------CCCCeEEEEEcCCC-CcEEE
Q 001403 794 QEAVPCFALSK--NDAYLFSASGG----VISLYIVMTFKTILTIMP--------------PSPTATSLAFNPHD-NNVIA 852 (1084)
Q Consensus 794 ~~~v~~l~~s~--dg~~l~~~sdg----~i~vwd~~~~~~~~~~~~--------------~~~~i~~l~~s~~d-~~~la 852 (1084)
...|.+|++.| ++...+.+..| .|... ...++.-..+.. ....|.++++.|.+ ...|.
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s-~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~ 132 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRS-DDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWY 132 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE-SSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEe-CCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEE
Confidence 45688999998 66666665554 33322 222322222211 11257789998733 44555
Q ss_pred EEeCCCeEEEEEcCCceeeeeec---c----------------cccCEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCce
Q 001403 853 IGMDDSTILIYNARSSEVISKLE---G----------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGI 912 (1084)
Q Consensus 853 ~g~~dg~i~iwd~~~~~~~~~l~---~----------------h~~~V~~l~~spd-~~~l~s~s~dg~I~iwd~~~~~~ 912 (1084)
++...+.|...+ +.|+.-..+. . ....|.+|.+.|. ...|..+..++.|...+-. ++
T Consensus 133 ~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~Dg-G~- 209 (394)
T 3b7f_A 133 AGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFESTDA-GT- 209 (394)
T ss_dssp EEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEESST-TS-
T ss_pred EEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEECCC-CC-
Confidence 566566555543 2222211111 0 1235788999873 3444445444444443222 21
Q ss_pred eeeeeeec-CCC-Cc-----cCCCCceEEEEccC-CCEEEEEeCCeEEEEEcCCcceeeEeecCC-C---CCEEEEEEcc
Q 001403 913 QTCRSLQT-PDG-VM-----TLAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPIS-S---VPISQATFSC 980 (1084)
Q Consensus 913 ~~~~~~~~-~~~-~~-----~~~~~v~~~~~s~d-g~~la~~~d~~i~vwd~~~~~~~~~~~~~h-~---~~v~~l~fs~ 980 (1084)
....+.. ... .. .....+..+++.|+ ...|.++..+.|...+- .|+.-..+...- . ..+..+++.|
T Consensus 210 -tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D-~G~tW~~~~~~l~~~~~~~~~~i~~~p 287 (394)
T 3b7f_A 210 -DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDR-REGVWKRIGDAMPREVGDIGFPIVVHQ 287 (394)
T ss_dssp -SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEET-TTTEEECGGGGSCTTTCSCEEEEEECS
T ss_pred -CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCC-CCCcceECCCCCCCCCccceEEEEECC
Confidence 1111111 000 00 00124788999986 35566665665555442 233222211111 1 3456788876
Q ss_pred -CCCEEEEEeC-----------CCcEEEEEcCCC-ceeEEeccccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcE
Q 001403 981 -DCRMVFTSFV-----------DGTLSIHEASNL-EVQCRILSTAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEV 1047 (1084)
Q Consensus 981 -dg~~l~t~~~-----------dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v 1047 (1084)
+...|+.+.. ++...+|....+ +--..+. .-++....-..+...+++++|.++..|.+++.+|.|
T Consensus 288 ~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l 365 (394)
T 3b7f_A 288 RDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI 365 (394)
T ss_dssp SCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred CCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence 3334444432 333455655543 3222222 112211000111223577888655667777766665
Q ss_pred EEEcCCCCCCCcccCC
Q 001403 1048 YVIEPNEPGDTWAVLP 1063 (1084)
Q Consensus 1048 ~vw~~~~~~~~~~~~~ 1063 (1084)
. .-...+.+|....
T Consensus 366 ~--~S~D~G~tW~~~~ 379 (394)
T 3b7f_A 366 W--ASADEGEHWQCIA 379 (394)
T ss_dssp E--EESSTTSBCEEEE
T ss_pred E--EECCCCCCceEcc
Confidence 4 4445677887643
No 350
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=92.57 E-value=15 Score=40.75 Aligned_cols=56 Identities=21% Similarity=0.169 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCC-EEEEEeCCCEEEEEEccCCccccceeeee---------cccccEeEEEeecC
Q 001403 389 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP 444 (1084)
Q Consensus 389 ~~V~~v~fspdg~-~las~~~dg~v~iwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d 444 (1084)
...+.++|.|||. .|.++...|.|++++.........+..+. ........|+|+|+
T Consensus 14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 3567899999996 56666788999999754331111111111 11456789999997
No 351
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=92.45 E-value=5.2 Score=47.58 Aligned_cols=196 Identities=10% Similarity=0.098 Sum_probs=107.0
Q ss_pred CCCCEEEEEeC-----CeEEEEEcCCceeEEEE-c-------CCCCCeEEEEEcCCCCcEEEEEeCCC------eEEEEE
Q 001403 804 KNDAYLFSASG-----GVISLYIVMTFKTILTI-M-------PPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN 864 (1084)
Q Consensus 804 ~dg~~l~~~sd-----g~i~vwd~~~~~~~~~~-~-------~~~~~i~~l~~s~~d~~~la~g~~dg------~i~iwd 864 (1084)
.++..++.|+. +.+.+||..+++-...- . .....-.++.+.. ++++++.|+.++ .+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence 46666666652 45889998876543322 1 1112234444543 567888887543 588999
Q ss_pred cCCce--eeeeecccccCEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCceeeeeeee-cCCCCccCCCCceEEEEccC
Q 001403 865 ARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD 939 (1084)
Q Consensus 865 ~~~~~--~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~d 939 (1084)
..+.+ .+..+......-. ++...++++++.||.++ .+.+||..+..-....... .+... .....+.+..+
T Consensus 475 ~~t~~W~~~~~~p~~R~~h~-~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~ 549 (695)
T 2zwa_A 475 MKTREWSMIKSLSHTRFRHS-ACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV 549 (695)
T ss_dssp TTTTEEEECCCCSBCCBSCE-EEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred CCCCcEEECCCCCCCcccce-EEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence 88743 3332222111112 22324889999988765 6899999886533221100 01111 12234565665
Q ss_pred -CCEEEEE-e--C-----CeEEEEEcCCcce-----eeEeec--CCCCCEEEEEEccCCCEEEEEeCC--------CcEE
Q 001403 940 -QTRFLLV-H--E-----THLAIYEAEELTC-----LKQWFP--ISSVPISQATFSCDCRMVFTSFVD--------GTLS 995 (1084)
Q Consensus 940 -g~~la~~-~--d-----~~i~vwd~~~~~~-----~~~~~~--~h~~~v~~l~fs~dg~~l~t~~~d--------g~i~ 995 (1084)
+++++.| . + +.+.+||+.+..- -..... .....-.+++...+++.++.|+.+ ..|.
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~ 629 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII 629 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence 5666664 2 2 3589999987761 111111 111111123333447788888743 4699
Q ss_pred EEEcCCCcee
Q 001403 996 IHEASNLEVQ 1005 (1084)
Q Consensus 996 vwd~~~~~~~ 1005 (1084)
+||+.+.+..
T Consensus 630 ~yd~~t~~W~ 639 (695)
T 2zwa_A 630 SLDPLSETLT 639 (695)
T ss_dssp EEETTTTEEE
T ss_pred EEECCCCeEE
Confidence 9999998776
No 352
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=90.99 E-value=11 Score=40.49 Aligned_cols=172 Identities=13% Similarity=0.171 Sum_probs=96.8
Q ss_pred CeEEEEEcCCc--eeEEEEcCC------CCCeEEEEEc---CC---CCcEEEEEe-CCCeEEEEEcCCceeeeeec----
Q 001403 815 GVISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE---- 875 (1084)
Q Consensus 815 g~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~la~g~-~dg~i~iwd~~~~~~~~~l~---- 875 (1084)
-+|.+||+.+. +.++++.-+ ......+++. |. ++.++.... ..+.|.|+|+.+++.-+.+.
T Consensus 123 pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~ 202 (381)
T 3q6k_A 123 PAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFK 202 (381)
T ss_dssp CEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGS
T ss_pred ceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCc
Confidence 35778888888 888776532 2457888887 21 134444444 46789999999886543331
Q ss_pred ----------cc----ccCEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCceeee---eeeecCCCCccCCCCceEE
Q 001403 876 ----------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 876 ----------~h----~~~V~~l~~spd----~~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~~ 934 (1084)
|. ...|..+++||+ ++.|....-.+ -++|.+.+..+... ..++.. |.......-..+
T Consensus 203 pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~ 280 (381)
T 3q6k_A 203 AERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIAL 280 (381)
T ss_dssp CCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEE
T ss_pred cccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceE
Confidence 11 246888999998 77777766555 35666553211110 001100 000000123345
Q ss_pred EEc-cCCCEEEE-EeCCeEEEEEcCC-c---ceeeEeecC-CCCCEEEEEEccCCCEEEEE
Q 001403 935 QFH-KDQTRFLL-VHETHLAIYEAEE-L---TCLKQWFPI-SSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 935 ~~s-~dg~~la~-~~d~~i~vwd~~~-~---~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~ 988 (1084)
++. .+|.++++ ...+.|..|+..+ . +....+... .-..+..+.+..+|.+.+++
T Consensus 281 ~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 281 AYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred EEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 675 66776666 4778899999875 1 112222211 12346677777777655554
No 353
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=90.26 E-value=34 Score=40.35 Aligned_cols=248 Identities=8% Similarity=0.044 Sum_probs=128.2
Q ss_pred EEE-EcCCCceeeeecccccCccccccceEEEEEcCCccccceeeeecC-CCC------CeEEEEEcCCCCEEEEE----
Q 001403 339 SMD-FHPVQHTLLLGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGV------SVNRVVWSPDGSLLGVA---- 406 (1084)
Q Consensus 339 ~v~-~spdg~~las~~~d~~sg~~~~~~~v~iwd~~~~~~~~~~~~~~~-h~~------~V~~v~fspdg~~las~---- 406 (1084)
.+. ++|||+++|.+..+-.+.. ..++++|+.++...-.. +.. -+. ....++|-.+...+++.
T Consensus 133 g~~~~~~~~~~~~~~ls~~G~d~----~~~~~~d~~t~~~~~~~--~~~~~k~~~~~~~~~~~~~W~d~~~~~~~~~~~~ 206 (711)
T 4hvt_A 133 GVSNCFQNPNRYLISMSFGGKDE----MFFREWDLEKKDFVKNG--FEPITNSGKLLEGKFTYPTWINKDTIIFNLVLHK 206 (711)
T ss_dssp EEEECSSSTTEEEEEEEETTCSE----EEEEEEETTTTEECTTC--SCCBCTTCCBCCEETCCEEEEETTEEEECCCCST
T ss_pred ceeecCCCCCEEEEEeCCCCCce----eEEEEEECCcCCcCCCC--cccccccccccccccceeeEECCCEEEEEeCCCC
Confidence 445 9999999999766522222 78999999987654321 110 000 11345776444444331
Q ss_pred ------eCCCEEEEEEccCCccccceeeeecccccE-eEEEeecCCCcE---EEEEEeCC---CcEEEEECCC--Cceee
Q 001403 407 ------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQI---SVITCGDD---KTIKVWDAVT--GSRTY 471 (1084)
Q Consensus 407 ------~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V-~~l~~s~d~~~l---~l~s~~~d---~~i~vwd~~~--g~~~~ 471 (1084)
+....|+.|.+-+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|... +. +.
T Consensus 207 ~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~ 284 (711)
T 4hvt_A 207 NEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLK-LQ 284 (711)
T ss_dssp TCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCE-EE
T ss_pred CCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCc-ce
Confidence 1124588888776532211 1333333332 345556777742 35554422 3456666543 43 22
Q ss_pred EeccCCCcEEEEeecccCCCcEEEEE----------ecCCeEEEEECCCC-------CceEe-e-cCCCCeEEEEEEcCC
Q 001403 472 SFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSL-------GARVD-Y-DAPGLGCTRMAYSAN 532 (1084)
Q Consensus 472 ~~~~h~~~v~~~~~~~~~~~~~l~s~----------s~dg~i~iwd~~~~-------~~~~~-~-~~~~~~i~~~~~s~d 532 (1084)
.+....... +..+ .++.+++.. ...+.|...++... ..... + ......+..+.+..+
T Consensus 285 ~l~~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 360 (711)
T 4hvt_A 285 KINMPSDAT--LQGS--FKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD 360 (711)
T ss_dssp ECCSCTTCE--EEEE--ETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS
T ss_pred EeecCCcce--Eeee--ECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC
Confidence 332111111 1111 133444422 24677888888763 11222 2 333446778888876
Q ss_pred CCEEEEEeeCCCCCeeEEEecCCCce-Eeee-eeccccccCceEEEEEcCCCCEEEE-EE---CCCcEEEEECCCCeE
Q 001403 533 GRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMNKVQL 604 (1084)
Q Consensus 533 ~~~l~~~~~~~~~~~~i~~wd~~~~~-~~~~-~~~~~~~~~~v~~~~~s~~~~~l~~-~~---~dg~i~iwd~~~~~~ 604 (1084)
..+++... ++...+.++|+.+++ .... +.... .+.+.....++++..++. .+ .-+.+..+|+. ++.
T Consensus 361 -~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 361 -RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp -CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred -EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 44444433 446678999987775 2222 22221 135666667777655444 33 34678888876 543
No 354
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=89.42 E-value=9.1 Score=45.47 Aligned_cols=198 Identities=13% Similarity=0.049 Sum_probs=101.3
Q ss_pred cCCCcEEEEEEeCC----CcEEEEECCCCceeeEe-c-------cCCCcEEEEeecccCCCcEEEEEecCC------eEE
Q 001403 443 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-------GHGAPVYSLCPHAKENIHFIFSISVDG------KIK 504 (1084)
Q Consensus 443 ~d~~~l~l~s~~~d----~~i~vwd~~~g~~~~~~-~-------~h~~~v~~~~~~~~~~~~~l~s~s~dg------~i~ 504 (1084)
.++. +++.||.+ ..+.+||..+++-...- . .....-..+.+ ..++.+++.|+.++ .+.
T Consensus 396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~--~~~~~lyv~GG~~~~~~~~~dv~ 471 (695)
T 2zwa_A 396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI--SRNNQLLLIGGRKAPHQGLSDNW 471 (695)
T ss_dssp CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE--TTTTEEEEECCBSSTTCBCCCCE
T ss_pred ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE--ccCCEEEEEcCCCCCCCccccEE
Confidence 3455 56666643 46888898877543221 1 00111112222 11446777776543 467
Q ss_pred EEECCCCCceEeecCCCC-eEEEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeec--cccccCceEEEEEcCC
Q 001403 505 AWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA 581 (1084)
Q Consensus 505 iwd~~~~~~~~~~~~~~~-~i~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~--~~~~~~~v~~~~~s~~ 581 (1084)
+||..+..-...-..+.. .-.+++...+++.++.|+.+..+ .+.+||..+.+-...-.. .........++.+..+
T Consensus 472 ~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~ 549 (695)
T 2zwa_A 472 IFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPV 549 (695)
T ss_dssp EEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETT
T ss_pred EEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCC
Confidence 787766432221111111 11223333488888888765543 699999988765433210 1101122333555555
Q ss_pred -CCEEEEEEC--C-----CcEEEEECCCCe------EEEEEcCCCCCCCc-ceEEEecCCCEEEEEEC--------CCeE
Q 001403 582 -KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPEN-PRICFNKNGTLLAVIAN--------ENRI 638 (1084)
Q Consensus 582 -~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~v-~~v~~s~~~~~l~~~~~--------dg~i 638 (1084)
+..++.|+. + ..+.+||+.+.. ........ ..+.. .+++...++++++.|+. ...+
T Consensus 550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v 628 (695)
T 2zwa_A 550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSI 628 (695)
T ss_dssp TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSE
T ss_pred CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeE
Confidence 556666664 2 458899998877 22222210 01111 23333334777777774 3458
Q ss_pred EEEEcCCCC
Q 001403 639 KILETPESN 647 (1084)
Q Consensus 639 ~iwd~~~~~ 647 (1084)
.+||..+.+
T Consensus 629 ~~yd~~t~~ 637 (695)
T 2zwa_A 629 ISLDPLSET 637 (695)
T ss_dssp EEEETTTTE
T ss_pred EEEECCCCe
Confidence 888887663
No 355
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*
Probab=89.39 E-value=25 Score=37.56 Aligned_cols=170 Identities=12% Similarity=0.129 Sum_probs=93.2
Q ss_pred cEEEEECCCC--ceeeEecc------CCCcEEEEeec-ccC----CCcEEE-EEecCCeEEEEECCCCCceEeec----C
Q 001403 458 TIKVWDAVTG--SRTYSFEG------HGAPVYSLCPH-AKE----NIHFIF-SISVDGKIKAWLYDSLGARVDYD----A 519 (1084)
Q Consensus 458 ~i~vwd~~~g--~~~~~~~~------h~~~v~~~~~~-~~~----~~~~l~-s~s~dg~i~iwd~~~~~~~~~~~----~ 519 (1084)
.|.+||+.++ +.++++.- ....+..+.+. ..+ ++.+++ +-+..+.|.++|+.+++...... .
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p 203 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA 203 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence 5778899988 88776643 23457778776 211 123444 44456789999998776544331 1
Q ss_pred C--------------CCeEEEEEEcCC----CCEEEEEeeCCCCCeeEEEecCC-----CceEeee--eeccccccCceE
Q 001403 520 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNES-----EGAIKRT--YQGLQLQHNSVS 574 (1084)
Q Consensus 520 ~--------------~~~i~~~~~s~d----~~~l~~~~~~~~~~~~i~~wd~~-----~~~~~~~--~~~~~~~~~~v~ 574 (1084)
. ...+..++++|+ ++.|+.....+ -.+|.+. ....... ..+.......-.
T Consensus 204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-----~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~ 278 (381)
T 3q6k_A 204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-----IKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI 278 (381)
T ss_dssp CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-----SEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE
T ss_pred ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-----CcEEEEEHHHhhCcchhhceEEeeecCCCCCcc
Confidence 1 136788999998 78888776432 1222221 1111111 112220012334
Q ss_pred EEEEc-CCCCEEEEEECCCcEEEEECCC-C---eEEEEEcCCCCCCCcceEEEecCCCEEEEE
Q 001403 575 VVHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI 632 (1084)
Q Consensus 575 ~~~~s-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~ 632 (1084)
..++. .+|..+++--+...|..|+..+ . +....+...........+.+.++|.+.+..
T Consensus 279 ~~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 279 ALAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp EEEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred eEEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 55675 5676666777888999999876 1 122233222233345566665555444433
No 356
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=85.84 E-value=33 Score=35.04 Aligned_cols=183 Identities=10% Similarity=0.011 Sum_probs=97.8
Q ss_pred CccEEEecCCCCEEEEEeCCeEEEEEcCCceeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 796 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 796 ~v~~l~~s~dg~~l~~~sdg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
.|..++...+- .++. .+|.+..|-....-.+..-..-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~h-s~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYH-SLAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSE-EEEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCE-EEEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 46666665443 3333 488888887654222111111124688887765 2334445 9999999765522221111
Q ss_pred ccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeeeeeecCCCCccCCCCceEEEEccCCCEEEEEeCCeEEEEE
Q 001403 876 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE 955 (1084)
Q Consensus 876 ~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd 955 (1084)
.....|..++...+.. ++ -. ||.|..|-........ .+... ...|..++...+... +. .++.|+.|-
T Consensus 138 ~~~~~i~~i~~G~~~~-~~-l~-~G~v~~wG~n~~gqlg-----~p~~~---~~~v~~i~~G~~hs~-al-~~G~v~~wG 204 (282)
T 3qhy_B 138 EAQSGVTALDGGVYTA-LA-VK-NGGVIAWGDNYFGQTT-----VPAEA---QSGVDDVAGGIFHSL-AL-KDGKVIAWG 204 (282)
T ss_dssp GGGSSEEEEEECSSEE-EE-EE-TTEEEEEECCTTSTTS-----CCGGG---GSSEEEEEECSSEEE-EE-ETTEEEEEE
T ss_pred cCCCCeEEEEcccCEE-EE-EE-CCEEEEecCCCCCCCC-----Cceec---CCCeEEEEecCCEEE-EE-ECCeEEEEE
Confidence 2345677777754433 33 23 7999999776522111 01000 124666666554444 34 799999997
Q ss_pred cCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 956 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 956 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
......+.... .....|..++...+.. ++.. ||.|..|-...
T Consensus 205 ~n~~gqlg~p~-~~~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 205 DNRYKQTTVPT-EALSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp CCTTSTTCCCG-GGGSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCCCCCCCCc-ccCCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 65433222211 1134577777555433 3333 89999996554
No 357
>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B
Probab=84.76 E-value=37 Score=34.66 Aligned_cols=205 Identities=12% Similarity=0.104 Sum_probs=99.4
Q ss_pred ceEEEEEcCCccccceeeeecCCCCCeEEEEEcCCCCEEEEEeCCCEEEEEEccCCccccceeeeecccccEeEEEeecC
Q 001403 365 RNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 444 (1084)
Q Consensus 365 ~~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~las~~~dg~v~iwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d 444 (1084)
+.|..|-.....+.-.. ......|..++...+-. +|. . ||.|..|-......+.. ...-...|..++...+
T Consensus 42 G~v~~wG~n~~Gqlg~p---~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gqlg~---P~~~~~~v~~ia~G~~ 112 (282)
T 3qhy_B 42 GKVLGWGANLNGQLTMP---AATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQTTV---PAEARSGVDAIAAGAW 112 (282)
T ss_dssp TEEEEEECCSSSTTSCC---GGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTSTTCC---CGGGSSSEEEEEEETT
T ss_pred CEEEEEeCCCCCCCCCC---ccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCCCCC---CcccCCCeEEEECcCC
Confidence 66666665443222110 00123576777654432 232 4 89999998765332221 1111246777776644
Q ss_pred CCcEEEEEEeCCCcEEEEECCCCceeeEeccCCCcEEEEeecccCCCcEEEEEecCCeEEEEECCCCCceEeecCCCCeE
Q 001403 445 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGC 524 (1084)
Q Consensus 445 ~~~l~l~s~~~d~~i~vwd~~~g~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~~~~~~~~~~~~~~i 524 (1084)
- .+.-. ||.|..|-......+..-......|..++.- ....++ -. ||.|..|-.......-........|
T Consensus 113 h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G---~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v 182 (282)
T 3qhy_B 113 A----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG---VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGV 182 (282)
T ss_dssp E----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC---SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSE
T ss_pred E----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc---cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCe
Confidence 3 23334 8999999765422221111123456666542 222333 34 7999999765433322111112356
Q ss_pred EEEEEcCCCCEEEEEeeCCCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCC
Q 001403 525 TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 525 ~~~~~s~d~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~ 601 (1084)
..++...+...++ . ++.|+.|-....-.+...... ...|..++..... .+ +.. ||.|+.|-...
T Consensus 183 ~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~~---~~~v~~i~~G~~h-~~-al~-~g~v~~wG~n~ 246 (282)
T 3qhy_B 183 DDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTEA---LSGVSAIASGEWY-SL-ALK-NGKVIAWGSSR 246 (282)
T ss_dssp EEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGGG---GSSCCEEEECSSC-EE-EEE-TTEEEEESTTC
T ss_pred EEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCccc---CCCceEEEcCCCE-EE-EEE-CCEEEEecCCC
Confidence 6665544332222 2 445777754432111111011 1346666655443 22 333 88888886544
No 358
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=79.12 E-value=2.1 Score=38.27 Aligned_cols=53 Identities=15% Similarity=0.295 Sum_probs=40.9
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcccccc
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIR 125 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~ 125 (1084)
++|.|+-+.||||+..|..++|..++.+.-..+... .+..++|..+.....+.
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~ 85 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIH 85 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHh
Confidence 899999999999999999999999999865555555 67777777665544333
No 359
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=78.97 E-value=66 Score=33.59 Aligned_cols=157 Identities=8% Similarity=0.097 Sum_probs=89.2
Q ss_pred CCCccEE-EecC--CCCEEEEEe-CCeEEEEEcCCcee-------EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEE
Q 001403 794 QEAVPCF-ALSK--NDAYLFSAS-GGVISLYIVMTFKT-------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 862 (1084)
Q Consensus 794 ~~~v~~l-~~s~--dg~~l~~~s-dg~i~vwd~~~~~~-------~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~i 862 (1084)
...|..+ .+.. +..+++..+ +|.++-..+..... ...+.. ...+..+.... +...|+..+..|.+..
T Consensus 94 ~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke-~D~lv~~~~~~-~~d~ill~T~~G~~~r 171 (327)
T 3uc1_A 94 EERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRD-NDELVGAVLCS-AGDDLLLVSANGQSIR 171 (327)
T ss_dssp TCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCT-TCCEEEEEEEC-TTCEEEEEETTSEEEE
T ss_pred CCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECC-CCEEEEEEEec-CCCEEEEEECCCeEEE
Confidence 3344444 3332 466777766 79999888765332 122332 34555555555 4557777888998888
Q ss_pred EEcC--C---------ceeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceee-----eeeeecCCCCcc
Q 001403 863 YNAR--S---------SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMT 926 (1084)
Q Consensus 863 wd~~--~---------~~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~ 926 (1084)
+... . |...-.+. ....|.++...+++..|+.++..|.++.-.+..-.... ...+......
T Consensus 172 f~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~-- 248 (327)
T 3uc1_A 172 FSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRR-- 248 (327)
T ss_dssp EECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTT--
T ss_pred EECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCC--
Confidence 8776 2 11112232 34567777777777789999999999988876532211 1112111101
Q ss_pred CCCCceEEEE-ccCCCEEEEEeCCeEEEEEcC
Q 001403 927 LAPSETHIQF-HKDQTRFLLVHETHLAIYEAE 957 (1084)
Q Consensus 927 ~~~~v~~~~~-s~dg~~la~~~d~~i~vwd~~ 957 (1084)
+.+..+.. ..+...++++.+|.+.-++..
T Consensus 249 --d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~ 278 (327)
T 3uc1_A 249 --GRLVGALIVDDDSELYAVTSGGGVIRTAAR 278 (327)
T ss_dssp --CSEEEEEEECTTCEEEEEEGGGCEEEEEGG
T ss_pred --CeEEEEEEeCCCccEEEEcCCCeEEEEehh
Confidence 12333333 334445555777777777654
No 360
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Probab=77.30 E-value=93 Score=34.39 Aligned_cols=103 Identities=15% Similarity=0.160 Sum_probs=60.9
Q ss_pred CccEEEecCCCC--EEEEEeCCeEEEEEcCCc---eeEEEEcC---------CCCCeEEEEEcCC---CCcEEEEEeC--
Q 001403 796 AVPCFALSKNDA--YLFSASGGVISLYIVMTF---KTILTIMP---------PSPTATSLAFNPH---DNNVIAIGMD-- 856 (1084)
Q Consensus 796 ~v~~l~~s~dg~--~l~~~sdg~i~vwd~~~~---~~~~~~~~---------~~~~i~~l~~s~~---d~~~la~g~~-- 856 (1084)
....|+|.|||. ++++-..|.|++++.... ..+..+.. .......|+|+|+ ++.+.++-+.
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 456899999995 666666899999975422 12222211 1356789999993 2444443322
Q ss_pred C----------CeEEEEEcCC----------ceeeeeec----ccccCEEEEEEcCCCCEEEEEeCCC
Q 001403 857 D----------STILIYNARS----------SEVISKLE----GHSKRVTGLVFSDALNILVSSGGDA 900 (1084)
Q Consensus 857 d----------g~i~iwd~~~----------~~~~~~l~----~h~~~V~~l~~spd~~~l~s~s~dg 900 (1084)
+ ..|.-|.+.. .+.+..+. .|. ...|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~--g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHL--GGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSC--EEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCccc--CCcEeECCCCcEEEEeCCCC
Confidence 1 1344455532 12232222 243 57899999999888877644
No 361
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=76.97 E-value=3.5 Score=37.82 Aligned_cols=53 Identities=11% Similarity=0.175 Sum_probs=41.0
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhccccc
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI 124 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~ 124 (1084)
++|.|+-+.||||+..|..++|..+|++.-..+.....+..++|..+.....+
T Consensus 52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l 104 (156)
T 2nxp_A 52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHM 104 (156)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHH
Confidence 89999999999999999999999999985444443345667777766554333
No 362
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=74.49 E-value=78 Score=32.11 Aligned_cols=191 Identities=10% Similarity=0.070 Sum_probs=104.1
Q ss_pred cEEEEEeCCCeEEE---EEcCCceeeeeecccccCEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCceee---eeeeecC
Q 001403 849 NVIAIGMDDSTILI---YNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQT---CRSLQTP 921 (1084)
Q Consensus 849 ~~la~g~~dg~i~i---wd~~~~~~~~~l~~h~~~V~~l~~sp-d~~~l~s~s~dg~I~iwd~~~~~~~~---~~~~~~~ 921 (1084)
..|+.-+..|.++- |++..+.....+. ....|..+.... +..+++..+.+|.++-..+..-. .. ...+...
T Consensus 36 ~~ll~fT~~G~v~~~~~~~lp~~~~~~ll~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lk 113 (276)
T 3no0_A 36 EGLFLVSNRGRVYWIAGSQALQGSKVSLKS-REEKIVGAFIREKFGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLT 113 (276)
T ss_dssp SCEEEEETTSEEEEECSHHHHTSEECCCSS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCC
T ss_pred CEEEEEcCCCeEEEEEhhhCccCcccccCC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecC
Confidence 34555566665554 4444322111133 345676664421 56899999999999999876532 11 1111111
Q ss_pred CCCccCCCCceEEEEccCCCEEE-EEeCCeEEEEEcCC---------cceeeEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 922 DGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEE---------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 922 ~~~~~~~~~v~~~~~s~dg~~la-~~~d~~i~vwd~~~---------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
++ ..+..+....+...++ .+..|.+..+.... |.....+ .....|.++...+++.+++..+..
T Consensus 114 eg-----D~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L--~~~d~vv~~~~~~~~~~ll~~T~~ 186 (276)
T 3no0_A 114 EG-----DEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKL--EKNDETSGLRIWNGEPYLLVITAK 186 (276)
T ss_dssp TT-----CCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCC--CTTCCEEEEEEESSCSEEEEEETT
T ss_pred CC-----CEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEcc--CCCCEEEEEEEeCCCCEEEEEeCC
Confidence 11 2455555554444444 47888877776532 1111111 124567777666667788889999
Q ss_pred CcEEEEEcCCCceeEEec-cccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEE--EcCCC
Q 001403 992 GTLSIHEASNLEVQCRIL-STAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV--IEPNE 1054 (1084)
Q Consensus 992 g~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~v--w~~~~ 1054 (1084)
|.++...+..-....+-. ....+. .++.+-...+ .. +...++..+.+|.+.. ++..+
T Consensus 187 G~~kr~~~~e~~~~~R~gkGv~~i~---~~~~lv~~~~-~~--~~~~i~~~t~~G~~ir~~~~~~~ 246 (276)
T 3no0_A 187 GRVKKISHEEIPKTNRGVKGTEVSG---TKDTLVDLIP-IK--EEVELLITTKNGKAFYDKINQKD 246 (276)
T ss_dssp SCEEEEEGGGSCCCCTTCCCEECCC---SSSCEEEEEE-ES--SEEEEEEEETTSCEEEEEEEGGG
T ss_pred CcEEEeEHHHcccCCCCCcceEEEc---CCCcEEEEEE-eC--CCCEEEEEcCCCeEEEeeeCHHH
Confidence 999999876544332210 000111 1233332222 23 2457888889999888 87643
No 363
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=73.70 E-value=81 Score=31.96 Aligned_cols=195 Identities=6% Similarity=0.019 Sum_probs=106.7
Q ss_pred EEEecCCCCEEEEEeCCeEE---EEEcCCceeEEEEcCCCCCeEEEEEcCC-CCcEEEEEeCCCeEEEEEcCCc------
Q 001403 799 CFALSKNDAYLFSASGGVIS---LYIVMTFKTILTIMPPSPTATSLAFNPH-DNNVIAIGMDDSTILIYNARSS------ 868 (1084)
Q Consensus 799 ~l~~s~dg~~l~~~sdg~i~---vwd~~~~~~~~~~~~~~~~i~~l~~s~~-d~~~la~g~~dg~i~iwd~~~~------ 868 (1084)
.+..+.....++..+.|.++ +|++..+.... +......|.++.. ++ +..+++..+.+|.++...+..-
T Consensus 29 ~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~~~~~~G 106 (276)
T 3no0_A 29 ILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEFEYKAQG 106 (276)
T ss_dssp EEEEETTSCEEEEETTSEEEEECSHHHHTSEECC-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGTTTCSTT
T ss_pred EEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHhhhhcCC
Confidence 33444455566666677654 34443332211 2224556766644 42 3568999999999999987653
Q ss_pred eeeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----eeeeeeecCCCCccCCCCceEEEEccCCCEE
Q 001403 869 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 943 (1084)
Q Consensus 869 ~~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 943 (1084)
.....+. -.+.+..+....+...++..+..|.+..++...-.. .....+....+ ..|..+...+++..+
T Consensus 107 ~~~i~lk-egD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~-----d~vv~~~~~~~~~~l 180 (276)
T 3no0_A 107 MPIIKLT-EGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKN-----DETSGLRIWNGEPYL 180 (276)
T ss_dssp EECSCCC-TTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTT-----CCEEEEEEESSCSEE
T ss_pred eEEEecC-CCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCC-----CEEEEEEEeCCCCEE
Confidence 2222233 235666666666667888889999988887654111 00111211111 245555544555444
Q ss_pred E-EEeCCeEEEEEcCCcce-------eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEE--EEcCCCc
Q 001403 944 L-LVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI--HEASNLE 1003 (1084)
Q Consensus 944 a-~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~v--wd~~~~~ 1003 (1084)
+ ++..|.++...+..-.. +..+ ...+.+..+....++..++..+.+|.+.. +++..-.
T Consensus 181 l~~T~~G~~kr~~~~e~~~~~R~gkGv~~i--~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~ 248 (276)
T 3no0_A 181 LVITAKGRVKKISHEEIPKTNRGVKGTEVS--GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIP 248 (276)
T ss_dssp EEEETTSCEEEEEGGGSCCCCTTCCCEECC--CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSC
T ss_pred EEEeCCCcEEEeEHHHcccCCCCCcceEEE--cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCC
Confidence 4 47788888877643221 2221 12344555544334445666667777776 7665443
No 364
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=71.46 E-value=12 Score=46.12 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=34.6
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 971 VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 971 ~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
..+.+++..+|..+++|-+.|+++|+|++.+++++.....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~dL 275 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIEL 275 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeecc
Confidence 3567778888999999999999999999999999887653
No 365
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=67.59 E-value=1.2e+02 Score=31.34 Aligned_cols=151 Identities=12% Similarity=0.065 Sum_probs=80.8
Q ss_pred CCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEE-EecCCCCEEEEEeCC
Q 001403 737 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF-ALSKNDAYLFSASGG 815 (1084)
Q Consensus 737 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l-~~s~dg~~l~~~sdg 815 (1084)
+..+++..+.+|.++.-.+....... ..| .....+.. . ..+..+ ....+...++..+.|
T Consensus 108 ~~~~ll~~T~~G~~Krt~l~e~~~~~---------------r~G--~~~i~l~~--~-d~lv~~~~~~~~~~i~l~T~~G 167 (307)
T 1zi0_A 108 EGVKVFMATANGTVKKTVLTEFNRLR---------------TAG--KVAIKLVD--G-DELIGVDLTSGEDEVMLFSAEG 167 (307)
T ss_dssp TTCEEEEEETTSEEEEEEGGGGTTCC---------------TTC--EESSCCCT--T-CCEEEEEEECTTCEEEEEETTS
T ss_pred CCcEEEEEeCCCeEEEEEHHHhhccc---------------cCC--eEEEEECC--C-CEEEEEEEeCCCCEEEEECCCC
Confidence 45678889999998876553211100 011 11112221 2 333333 334444555555678
Q ss_pred eEEEEEcCCc---------eeEEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCc---------eeeeeeccc
Q 001403 816 VISLYIVMTF---------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---------EVISKLEGH 877 (1084)
Q Consensus 816 ~i~vwd~~~~---------~~~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~---------~~~~~l~~h 877 (1084)
.+..+....- .....+. ....|.++...+ ++..|++.+..|.++-.++..- .....+..-
T Consensus 168 ~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~-~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~~~~~~~~ 245 (307)
T 1zi0_A 168 KVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPR-GDGAILTATQNGYGKRTAVAEYPTKSRATKGVISIKVTER 245 (307)
T ss_dssp EEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCC-SSCEEEEEETTSEEEEECGGGSCCCCTTSCCEESSCCCTT
T ss_pred cEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEec-CCCEEEEEEcCCceEEEEHHHhccCCCCCCCEEeeEecCC
Confidence 8877776431 1111222 335676766555 4567888999999998877431 112223223
Q ss_pred ccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCC
Q 001403 878 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 909 (1084)
Q Consensus 878 ~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~ 909 (1084)
.+.+..+....+...++..+.+|.+.-.++..
T Consensus 246 ~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 246 NGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp TCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 35565555444445555666777766666654
No 366
>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}
Probab=64.51 E-value=2.2e+02 Score=33.42 Aligned_cols=180 Identities=12% Similarity=-0.028 Sum_probs=91.6
Q ss_pred CeEEEEEcCCce--eEEEEcCCCCC-eEEEEEcCCCCc-----EEEEEeCC---CeEEEEEcCC--ceeeeeecccccCE
Q 001403 815 GVISLYIVMTFK--TILTIMPPSPT-ATSLAFNPHDNN-----VIAIGMDD---STILIYNARS--SEVISKLEGHSKRV 881 (1084)
Q Consensus 815 g~i~vwd~~~~~--~~~~~~~~~~~-i~~l~~s~~d~~-----~la~g~~d---g~i~iwd~~~--~~~~~~l~~h~~~V 881 (1084)
.+|+.|.+-+.. ....+.+.... -.....++ +++ .+++.+.+ ..+++.+... ++.. .+......
T Consensus 216 ~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~- 292 (711)
T 4hvt_A 216 NSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLL-SDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPSDA- 292 (711)
T ss_dssp CEEEEEETTSCGGGCEEEEECCTTSCEEEEEESS-CTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCTTC-
T ss_pred CEEEEEECCCChHHCeEEeccCCCceEEEEEEec-CCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCCcc-
Confidence 468888886542 23344443333 33455666 444 24443322 4566666653 4322 22212221
Q ss_pred EEEEEcCCCCEEEEE----------eCCCcEEEEeCCCCce-----eeeeeeecCCCCccCCCCceEEEEccCCCEEEE-
Q 001403 882 TGLVFSDALNILVSS----------GGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL- 945 (1084)
Q Consensus 882 ~~l~~spd~~~l~s~----------s~dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~- 945 (1084)
.+..++++.+++.. ...+.|.+.++.++.. .....+-...... .+..+.+..+. ++++
T Consensus 293 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~-l~~~~ 366 (711)
T 4hvt_A 293 -TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANE----VFNFISTTKDR-VFLAT 366 (711)
T ss_dssp -EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTE----EEEEEEECSSC-EEEEE
T ss_pred -eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCC----eEEEEEEECCE-EEEEE
Confidence 12344566665532 2456788888876421 1111111222222 47788888774 4444
Q ss_pred EeCC--eEEEEEcCCcc-eeeE-eecCCCCCEEEEEEccCCCE-EEEEeC---CCcEEEEEcCCCce
Q 001403 946 VHET--HLAIYEAEELT-CLKQ-WFPISSVPISQATFSCDCRM-VFTSFV---DGTLSIHEASNLEV 1004 (1084)
Q Consensus 946 ~~d~--~i~vwd~~~~~-~~~~-~~~~h~~~v~~l~fs~dg~~-l~t~~~---dg~i~vwd~~~~~~ 1004 (1084)
..++ .|.++++.+++ .... +.....+.+....+++++.. +++.+. -+.+..+|+. ++.
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~ 432 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HEL 432 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCE
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcE
Confidence 4555 47888877664 2222 21111346777777777654 444433 2568888877 543
No 367
>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1
Probab=63.16 E-value=2.3 Score=38.50 Aligned_cols=30 Identities=13% Similarity=0.087 Sum_probs=27.1
Q ss_pred hhhHHHHhHHHhhhcCCCHHHHHHHHHhhcc
Q 001403 72 IYFEIRKQNFFEALDGHDIAKALNILKKDLK 102 (1084)
Q Consensus 72 ~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~ 102 (1084)
++|.|+-+.||||+..| .++|..+|.+.-.
T Consensus 35 lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~ 64 (148)
T 2j49_A 35 IMYPIFIYLFLNLVAKN-PVYARRFFDRFSP 64 (148)
T ss_dssp HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhH
Confidence 89999999999999999 9999999987433
No 368
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=62.50 E-value=43 Score=28.92 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=45.2
Q ss_pred hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHH
Q 001403 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1084)
Q Consensus 21 ~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~ 95 (1084)
|.++.+.+++=..+..+ ...=.-....|+|++|+..+.+.-.++... ... +-..=.=+...|++++|+.
T Consensus 29 ~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~--~~a----~~~lg~~~~~~~~~~~A~~ 102 (126)
T 4gco_A 29 YPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKF--IKG----YIRKAACLVAMREWSKAQR 102 (126)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH----HHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhh--hHH----HHHHHHHHHHCCCHHHHHH
Confidence 77777666653332221 122233445677888777776642222221 111 1112222345677778877
Q ss_pred HHHhhccccCCCCHHHHHHHHHHh
Q 001403 96 ILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
.+++-+. +.+.+.+-...|..+|
T Consensus 103 ~~~~al~-l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 103 AYEDALQ-VDPSNEEAREGVRNCL 125 (126)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHC
T ss_pred HHHHHHH-HCcCCHHHHHHHHHhc
Confidence 7776443 2233445445555443
No 369
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.60 E-value=99 Score=38.01 Aligned_cols=38 Identities=18% Similarity=0.213 Sum_probs=32.3
Q ss_pred cCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCceeeee
Q 001403 879 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR 916 (1084)
Q Consensus 879 ~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~~~~~ 916 (1084)
..+.+++..++..++++.+.|+++|+|++.++.+....
T Consensus 236 ~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~ 273 (950)
T 4gq2_M 236 NTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI 273 (950)
T ss_dssp TCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence 35778888889999999999999999999998765543
No 370
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=60.31 E-value=26 Score=39.47 Aligned_cols=60 Identities=13% Similarity=0.190 Sum_probs=43.0
Q ss_pred CceEEEEccCCCEEEEEe-------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEe
Q 001403 930 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF 989 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~ 989 (1084)
....|+|+++|.+.++.. ...+..++..+|+....+.......++.++||||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence 467899999999877431 125777777778765543322346789999999999988764
No 371
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=59.98 E-value=88 Score=31.91 Aligned_cols=54 Identities=11% Similarity=0.068 Sum_probs=33.3
Q ss_pred HHHHHHHHHhhhhcC-hHHHHHHHHH--hcCCCh-h--H--HHHHHHhcCcCHHHHHHHhcc
Q 001403 6 KDLVFLILQFLNEEG-FTESAHMLER--ESRFYF-D--M--KFFEDMILDGKWEDVEQYLSS 59 (1084)
Q Consensus 6 ~~~~rli~q~L~~~g-~~~s~~~l~~--Es~~~~-~--~--~~~~~~i~~g~w~~~~~~l~~ 59 (1084)
-+.++++.+++...| +.++.+.|++ +.++.. + + ..=.-....|++++|+..+.+
T Consensus 65 ~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~ 126 (291)
T 3mkr_A 65 LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ 126 (291)
T ss_dssp HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence 346777788888777 7777777776 233212 1 1 112334567888888887775
No 372
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=59.39 E-value=21 Score=40.84 Aligned_cols=59 Identities=14% Similarity=0.188 Sum_probs=42.7
Q ss_pred CceEEEEccCCCEEEEEe-------------CCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEE
Q 001403 930 SETHIQFHKDQTRFLLVH-------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 988 (1084)
Q Consensus 930 ~v~~~~~s~dg~~la~~~-------------d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~ 988 (1084)
..-.|+|+|+|.++++.. ++.+.+.+..+++..+.+.......++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence 356799999999666631 12466667777776555444447899999999999998876
No 373
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=59.30 E-value=1.8e+02 Score=30.78 Aligned_cols=65 Identities=6% Similarity=-0.016 Sum_probs=37.8
Q ss_pred cCCCCEEEEEECCCcEEEEECCC-------CeEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 579 DTAKDQILAAGDDHVIKIWDMNK-------VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 579 s~~~~~l~~~~~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
-|+...+++.+.+|.|+--.+.. ++-+..+..... ..+..+........++..+..|.+.-+...
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~ 75 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEE-DFIDQLWLVNTHDTLLTFTSSGKVFWLPVH 75 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCC-CCEEEEEEECTTCEEEEEETTSEEEEEEGG
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCC-CEEEEEEEecCCCEEEEEeCCCeEEEEEHH
Confidence 46778999999999998764321 111222222221 234455555555667777777776665543
No 374
>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}
Probab=58.79 E-value=1.9e+02 Score=30.85 Aligned_cols=194 Identities=10% Similarity=0.093 Sum_probs=96.1
Q ss_pred ccEEEecCCCCE-EEEEeCCeEEEEEcCCc-----------eeEEEEcC-CCCCeEEEEEcCCCCcEEEEEeCCCeEEEE
Q 001403 797 VPCFALSKNDAY-LFSASGGVISLYIVMTF-----------KTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIY 863 (1084)
Q Consensus 797 v~~l~~s~dg~~-l~~~sdg~i~vwd~~~~-----------~~~~~~~~-~~~~i~~l~~s~~d~~~la~g~~dg~i~iw 863 (1084)
+..++++....+ ++...+|.|..|-.... .....+.. ....|..++.. ....+....||.|+.|
T Consensus 107 ~~~v~i~~G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G---~~hs~alt~~G~v~~w 183 (389)
T 3kci_A 107 IKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG---GAHSACVTAAGDLYTW 183 (389)
T ss_dssp EEEEEECTTCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC---SSEEEEEETTSCEEEE
T ss_pred eeEEEECcCCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC---cCeEEEEeCCCeEEEe
Confidence 344555544443 33444788888854321 11122221 12356666664 4466667789999999
Q ss_pred EcCC-cee----------eeeecc-cccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce---------eeeeeeecCC
Q 001403 864 NARS-SEV----------ISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI---------QTCRSLQTPD 922 (1084)
Q Consensus 864 d~~~-~~~----------~~~l~~-h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~---------~~~~~~~~~~ 922 (1084)
-... +++ ...+.. ....|..++........+....||.|..|-...... .....+..+.
T Consensus 184 G~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~ 263 (389)
T 3kci_A 184 GKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLT 263 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGT
T ss_pred CCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccC
Confidence 7543 110 111111 123577777654335566667899999996543110 0111111111
Q ss_pred CCccCCCCceEEEEccCCCEEEEEeCCeEEEEEcCCccee-----------eEeecCCCCCEEEEEEccCCCEEEEEeCC
Q 001403 923 GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL-----------KQWFPISSVPISQATFSCDCRMVFTSFVD 991 (1084)
Q Consensus 923 ~~~~~~~~v~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~-----------~~~~~~h~~~v~~l~fs~dg~~l~t~~~d 991 (1084)
+ ..|..++... ...+|...++.|+.|-....-.+ ..+.......|..++... .+.+....|
T Consensus 264 ~-----~~v~~v~~G~-~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G~--~h~~al~~~ 335 (389)
T 3kci_A 264 G-----LGVVKVECGS-QFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATGS--LHCVCCTED 335 (389)
T ss_dssp T-----SCEEEEEEET-TEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEECS--SEEEEEETT
T ss_pred C-----CcEEEEeCCC-CEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEecc--CeEEEECCC
Confidence 1 1244444322 22334467888888865321111 111111124566665543 344445689
Q ss_pred CcEEEEEcCC
Q 001403 992 GTLSIHEASN 1001 (1084)
Q Consensus 992 g~i~vwd~~~ 1001 (1084)
|.|..|=...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999997653
No 375
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=55.49 E-value=36 Score=35.45 Aligned_cols=110 Identities=15% Similarity=0.142 Sum_probs=58.1
Q ss_pred HHHHHHHhcCcCH---HHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhcccc-CCCCHHHHH
Q 001403 38 MKFFEDMILDGKW---EDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDF-APGNEELFK 113 (1084)
Q Consensus 38 ~~~~~~~i~~g~w---~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~-~~~~~~~~~ 113 (1084)
+.+|++.|.+|+| -+|.+.+..+ +.-++..+++++|+.+|..--.-| ...+...--
T Consensus 16 i~rl~~~I~~G~y~~~YEAHQ~~RTi--------------------~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~~sg~ 75 (336)
T 3lpz_A 16 IARLQRRIAEGQPEEQYEAAQETRLV--------------------AARYSKQGNWAAAVDILASVSQTLLRSGQGGSGG 75 (336)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCCCCccccHHHHHHHHH--------------------HHHHHhhcCHHHHHHHHHHHHHHHHHCCCcchHH
Confidence 7899999999999 8887776644 111233344445555444421111 112333444
Q ss_pred HHHHHhccccccchhccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCcchHHHHHHHHhHHHHHhhC
Q 001403 114 ELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHC 187 (1084)
Q Consensus 114 ~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~Q~~~c 187 (1084)
.|+.+|.- .....++. .....+.+|++-|. .+|| -.|.| ..++..|++|=....
T Consensus 76 DL~~llve-----vy~~~~~~-~~~~~~~rL~~L~~-~~~~------------~~p~r-~~fi~~ai~WS~~~g 129 (336)
T 3lpz_A 76 DLAVLLVD-----TFRQAGQR-VDGASRGKLLGCLR-LFQP------------GEPVR-KRFVKEMIDWSKKFG 129 (336)
T ss_dssp HHHHHHHH-----HHHHHTCC-CCHHHHHHHHHHHT-TSCT------------TCHHH-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHH-----HHHHcCCC-CCHHHHHHHHHHHH-hCCC------------CCcHH-HHHHHHHHHHHhhcC
Confidence 56655542 11111111 12345656555544 3444 12344 778899999977643
No 376
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=54.92 E-value=39 Score=34.93 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=58.8
Q ss_pred HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccc-cCCCCHHHHHHHH
Q 001403 38 MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKD-FAPGNEELFKELA 116 (1084)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~-~~~~~~~~~~~l~ 116 (1084)
+.+|++.|.+|+|=+|.+.+..+ |.-++..+++++|+.+|.+--.- +...+...--.|+
T Consensus 17 l~rl~~~I~~G~yYEAhQ~~Rtl--------------------~~Ry~~~~~~~eAidlL~~ga~~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 17 LQRFENKIKAGDYYEAHQTLRTI--------------------ANRYVRSKSYEHAIELISQGALSFLKAKQGGSGTDLI 76 (312)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH--------------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhccChHHHHHHHHHH--------------------HHHHHHhcCHHHHHHHHHHHHHHHHHCCCcchHHHHH
Confidence 78999999999999998887654 12223334455555555442111 1122334444565
Q ss_pred HHhccccccchhccccccCCChHHHHHHHHHHHhhcccCccccccccCCCCcchHHHHHHHHhHHHHHhhC
Q 001403 117 QLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHC 187 (1084)
Q Consensus 117 ~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~Q~~~c 187 (1084)
.++..- ....++. ....++.+|. +|-+.+||+ .|.| .++++.|++|=....
T Consensus 77 ~llvev-----~~~~~~~-~~~~~~~rl~-~l~~~~p~~------------~~~r-~~fi~~ai~WS~~~g 127 (312)
T 2wpv_A 77 FYLLEV-----YDLAEVK-VDDISVARLV-RLIAELDPS------------EPNL-KDVITGMNNWSIKFS 127 (312)
T ss_dssp HHHHHH-----HHHTTCC-CSHHHHHHHH-HHHTTCCTT------------CTTH-HHHHHHHHHHHHHTS
T ss_pred HHHHHH-----HHHcCCC-CCHHHHHHHH-HHHHHCCCC------------CchH-HHHHHHHHHHHhhcC
Confidence 555421 1111111 1244555555 444444542 2333 788888999977654
No 377
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=52.82 E-value=2.1e+02 Score=29.41 Aligned_cols=236 Identities=10% Similarity=0.073 Sum_probs=109.7
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCccccc------eeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE---ECC---
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDARQ------QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW---DAV--- 465 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~~------~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw---d~~--- 465 (1084)
|+..++++.+.+|.|+--.+.+-+..+. ...+..+ +.+..+....... .++..+..|.+.-. ++.
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~--~ll~fT~~G~~~~~~~~elp~~~ 77 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHD--HILCFSSRGRVYSMKVYQLPEAT 77 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTC--EEEEEETTSEEEEEEGGGSCCCC
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCC--EEEEEECCCEEEEEEhhHCcCCC
Confidence 3556788889999987766543211110 0011222 2333333333334 34444456654443 332
Q ss_pred ---CCceee---EeccCCCcEEEEeecc-cCCCcEEEEEecCCeEEEEECCCCC-----ceE--eecCCCCeEEEEEEcC
Q 001403 466 ---TGSRTY---SFEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLG-----ARV--DYDAPGLGCTRMAYSA 531 (1084)
Q Consensus 466 ---~g~~~~---~~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~~~-----~~~--~~~~~~~~i~~~~~s~ 531 (1084)
.|..+. .+. ....|.++.... ..++.+++..+.+|.++--.+.... ... .+... ..+..+....
T Consensus 78 ~~a~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~ 155 (307)
T 1zi0_A 78 RGARGRPIVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTS 155 (307)
T ss_dssp SSSCCEEGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEEC
T ss_pred CCCCCeEhhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeC
Confidence 222221 122 334565554321 1345689999999999988764211 112 12222 3444444444
Q ss_pred CCCEEEEEeeCCCCCeeEEEecCCCc----e---EeeeeeccccccCceEEEEEcCCCCEEEEEECCCcEEEEECCCC--
Q 001403 532 NGRRLFSCGTSKEGESFLVEWNESEG----A---IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-- 602 (1084)
Q Consensus 532 d~~~l~~~~~~~~~~~~i~~wd~~~~----~---~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iwd~~~~-- 602 (1084)
+...++..+. .+.+..++...- + -+..+.-.. +..|.++....++..+++.+..|.++-.++..-
T Consensus 156 ~~~~i~l~T~----~G~~irf~~~~v~~~gr~a~Gv~~i~L~~--~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~ 229 (307)
T 1zi0_A 156 GEDEVMLFSA----EGKVVRFKESSVRAMGCNTTGVRGIRLGE--GDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPT 229 (307)
T ss_dssp TTCEEEEEET----TSEEEEEEGGGSCBCCTTCCCEECCCCCT--TCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCC
T ss_pred CCCEEEEECC----CCcEEEEEHHHcCccCCCCCCeEeEEeCC--CCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhcc
Confidence 4445555543 444555544321 1 111111111 245666655555677888999999888876321
Q ss_pred -----eEEEEEcCCCCCCCcceEEEecCCCEEEEEECCCeEEEEEcC
Q 001403 603 -----QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP 644 (1084)
Q Consensus 603 -----~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~ 644 (1084)
+-+..+........+..+....+...++..+.+|.+.-+...
T Consensus 230 ~~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~ 276 (307)
T 1zi0_A 230 KSRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVS 276 (307)
T ss_dssp CCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGG
T ss_pred CCCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecc
Confidence 111222211111223333332334445556666665555544
No 378
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=51.13 E-value=2.3e+02 Score=29.41 Aligned_cols=197 Identities=11% Similarity=0.082 Sum_probs=106.3
Q ss_pred ecCCCCEEEEEeCCeEEEEE---cCC------ceeEEEEcC--CCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCCc
Q 001403 802 LSKNDAYLFSASGGVISLYI---VMT------FKTILTIMP--PSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSS 868 (1084)
Q Consensus 802 ~s~dg~~l~~~sdg~i~vwd---~~~------~~~~~~~~~--~~~~i~~l~~s~~--d~~~la~g~~dg~i~iwd~~~~ 868 (1084)
.+.....++..+.|.+.-.. +.. |..+..+-. ....|.++..-++ +..++++.+.+|.++.-.+..-
T Consensus 50 ~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~ 129 (327)
T 3uc1_A 50 CSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDF 129 (327)
T ss_dssp EETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGG
T ss_pred eCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHh
Confidence 34444455555667655444 332 232222211 2345665544331 4679999999999999887652
Q ss_pred e-------eeeeecccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCce-----eeeeeeecCCCCccCCCCceEE
Q 001403 869 E-------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD--GWGI-----QTCRSLQTPDGVMTLAPSETHI 934 (1084)
Q Consensus 869 ~-------~~~~l~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~--~~~~-----~~~~~~~~~~~~~~~~~~v~~~ 934 (1084)
. ....+.. .+.+..+........|+..+..|.+..+.+. .-.. .....+.... ...|.++
T Consensus 130 ~~~~r~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~-----~d~Vv~~ 203 (327)
T 3uc1_A 130 DSNRSGGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNI-----DDRLLSL 203 (327)
T ss_dssp CCCCSSCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCT-----TCCEEEE
T ss_pred hccccCceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCC-----CCEEEEE
Confidence 2 2223333 3556666666666778888899998888877 3110 0011111111 1346666
Q ss_pred EEccCCCEEEE-EeCCeEEEEEcCCccee-------eEee-cCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCce
Q 001403 935 QFHKDQTRFLL-VHETHLAIYEAEELTCL-------KQWF-PISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1004 (1084)
Q Consensus 935 ~~s~dg~~la~-~~d~~i~vwd~~~~~~~-------~~~~-~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~ 1004 (1084)
...+++..++. +..|.++.-.+...... ..+. ..-...+..+....+...++..+.+|.+.-+++..-..
T Consensus 204 ~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~ 282 (327)
T 3uc1_A 204 NVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRK 282 (327)
T ss_dssp EECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCB
T ss_pred EEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccc
Confidence 66555555554 67888887776432211 1111 11123455554444445566667778777777665433
No 379
>3mez_B Mannose-specific lectin 3 chain 2; heterotetramer, sugar binding protein; 1.94A {Crocus vernus} SCOP: b.78.1.0
Probab=50.22 E-value=62 Score=27.44 Aligned_cols=59 Identities=7% Similarity=-0.020 Sum_probs=30.3
Q ss_pred eEEEEccCCCEEEEEeCCeEEEEEcCCcceeeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCC
Q 001403 932 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1001 (1084)
Q Consensus 932 ~~~~~s~dg~~la~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~ 1001 (1084)
..+.+..||.+++...+..-.+|...+.. ...-..+.+..||.+++.. .++.+ +|...+
T Consensus 26 ~~L~~q~dGNLvL~~~~~~~~vWssnt~~---------~~~~~~l~l~~dGNLVl~d-~~~~~-iW~S~t 84 (113)
T 3mez_B 26 YSLVMRDDCNLVLTKGSKTNIVWESGTSG---------RGQHCFMRLGHSGELDITD-DRLNT-VFVSNT 84 (113)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECCCTT---------SCSSCEEEECTTSCEEEEC-TTSCE-EEECSC
T ss_pred EEEEEcCCCEEEEEECCCCEEEEECCccc---------CCcCEEEEEeCCCcEEEEC-CCCCE-EEECCC
Confidence 35666666666554322223456644321 1122356777888776653 34443 676543
No 380
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=48.64 E-value=2.5e+02 Score=29.09 Aligned_cols=238 Identities=7% Similarity=0.100 Sum_probs=122.7
Q ss_pred CCCCEEEEEe-CCeEEEEEcCCcee----EEEEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcC---C------ce
Q 001403 804 KNDAYLFSAS-GGVISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR---S------SE 869 (1084)
Q Consensus 804 ~dg~~l~~~s-dg~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~---~------~~ 869 (1084)
|+..++++.+ +|.|+--.+...+. -..+. ....+..+.... ....|+..+..|.++-+... . |.
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lk-e~D~l~~~~~~~-t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~ 80 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMN-TKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQ 80 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEE-TTSEEEEEETTSEEEEEEGGGSCBCCTTSCCE
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccC-CCCEEEEEEEEC-CCCEEEEEECCCEEEEEEHHHCcCCCCCCCCc
Confidence 3445566655 68887766542211 11122 223444444444 45567777888876665542 2 33
Q ss_pred eeee---ecccccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCceee----eeeeecCCCCccCCCCceEEEEcc-
Q 001403 870 VISK---LEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQT----CRSLQTPDGVMTLAPSETHIQFHK- 938 (1084)
Q Consensus 870 ~~~~---l~~h~~~V~~l~~sp---d~~~l~s~s~dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~~~~v~~~~~s~- 938 (1084)
++.. +. ....|.++...+ ++.+++.++.+|.++--.+..-.... ...+...++ ..+..+....
T Consensus 81 ~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~-----d~lv~~~~~~~ 154 (323)
T 1wp5_A 81 HIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKND-----DQVVDVHLTDG 154 (323)
T ss_dssp EGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTT-----CCEEEEEEECS
T ss_pred ChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCC-----CEEEEEEEeCC
Confidence 2222 22 233566654333 26789999999999999886432211 112222222 1344444443
Q ss_pred CCCEEEEEeCCeEEEEEcCCccee-------eEeecCCCCCEEEEEEccCCC-EEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 939 DQTRFLLVHETHLAIYEAEELTCL-------KQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 939 dg~~la~~~d~~i~vwd~~~~~~~-------~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
+...++.+.+|.+..+....-... ..........|.++...+++. .|++.+..|..+.-++..-....+-..
T Consensus 155 ~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~k 234 (323)
T 1wp5_A 155 MNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKR 234 (323)
T ss_dssp CSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSC
T ss_pred CCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCC
Confidence 444555578888887776432111 111111245566665544455 788888999988887765322211110
Q ss_pred ----ccccCCCCcccceeeeEEEECCCCCCEEEEEeCCCcEEEEcCCC
Q 001403 1011 ----TAYLRPTTSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1054 (1084)
Q Consensus 1011 ----~~~~~~~~~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~~~ 1054 (1084)
...+... ++.+.. ++...+ +..++..+..|.+....+.+
T Consensus 235 Gv~~~~~~~~~--~~~l~~-~~~v~~--~~~i~~it~~g~~ir~~~~~ 277 (323)
T 1wp5_A 235 GVVILRELKAN--PHRISG-FVVAQD--SDTIYLQTEKSFIETIKVGD 277 (323)
T ss_dssp CEECSCCCSSS--CCCEEE-EEEECT--TCEEEEEETTSCEEEEEGGG
T ss_pred CEECeeecCCC--CceEEE-EEEeCC--CCeEEEEeCCCeEEEEEhhh
Confidence 0011111 112221 223343 45778888899887776643
No 381
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=46.11 E-value=27 Score=30.60 Aligned_cols=91 Identities=20% Similarity=0.318 Sum_probs=49.9
Q ss_pred CchhHHHHHHHHHhhhhcCh-HHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccccc--ccCccccchhhhHHHH
Q 001403 2 SKLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTKIYFEIRK 78 (1084)
Q Consensus 2 ~~~~~~~~rli~q~L~~~g~-~~s~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~~~~~l~~ 78 (1084)
+....+|...|+..|.+.|| ..+...+.++.|++.+ ++..|++.+..+.. +-..++..-++..+.+
T Consensus 18 ~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~-----------eve~vL~~iQ~~dP~GVgArdL~ECLllQL~~ 86 (130)
T 2k9m_A 18 EGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE-----------ELEKVRQKVLRLEPLGVCSKDVWEFLELQIEE 86 (130)
T ss_dssp CSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHH-----------HHHHHHHHHHTSSSCCTTTSCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH-----------HHHHHHHHHhcCCCCccccCCHHHHHHHHHhc
Confidence 34456788999999999997 4566666666676543 23444555555522 1222222212222211
Q ss_pred ---------hHHHh-hhcCCCH-HHHHHHHHhhcccc
Q 001403 79 ---------QNFFE-ALDGHDI-AKALNILKKDLKDF 104 (1084)
Q Consensus 79 ---------q~~~E-ll~~~~~-~~a~~~l~~~l~~~ 104 (1084)
..+|| +|..+++ .+|+.++|+ |.|.
T Consensus 87 ~~~~a~~ii~~~l~~~la~~~~~~~~~~~Ir~-L~P~ 122 (130)
T 2k9m_A 87 IYPEEEEILKKALRDLKRGKKLKPEIKGKLSR-LRLF 122 (130)
T ss_dssp SCSTTHHHHHHHHHHHHHSCCCCHHHHHHHHT-CCSC
T ss_pred CchhHHHHHHHhHHHHHHcCCHHHHHHHHHHc-CCCC
Confidence 14567 7776663 446666654 5553
No 382
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=45.75 E-value=3e+02 Score=29.23 Aligned_cols=263 Identities=8% Similarity=0.014 Sum_probs=116.9
Q ss_pred CCCeEEEEEcC--CCCEEEEEeCCC--EEEEEEc-cCCccccceee---eec--------ccccEeEEEeecC--CCcEE
Q 001403 388 GVSVNRVVWSP--DGSLLGVAYSKH--IVQLYAY-HGGSDARQQLE---IDA--------HVGNVNDLAFSAP--CKQIS 449 (1084)
Q Consensus 388 ~~~V~~v~fsp--dg~~las~~~dg--~v~iwd~-~~~~~~~~~~~---l~~--------h~~~V~~l~~s~d--~~~l~ 449 (1084)
...|.+|++.| ++...|.+. .| ...||.. +.|+....... +.. +...|.++++.|. .. .
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~-~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~--~ 130 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAAR-TGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPG--T 130 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEE-C--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTT--C
T ss_pred CCceEEEEECCCCCCeEEEEec-CCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCC--E
Confidence 35799999999 555555443 33 0123333 33433222111 111 1125788999873 33 2
Q ss_pred EEEEeCCCcEEEEECCCCceeeEecc-------------------CCCcEEEEeecccCCCcEEEEEecCCeEEEEECCC
Q 001403 450 VITCGDDKTIKVWDAVTGSRTYSFEG-------------------HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 450 l~s~~~d~~i~vwd~~~g~~~~~~~~-------------------h~~~v~~~~~~~~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
+..+...+.|...+ ..|+.-..+.. ....+.+|.+.+...+ .++.+..++.|... ..
T Consensus 131 l~~g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~-~l~vg~~~ggl~~s--~D 206 (394)
T 3b7f_A 131 WYAGTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPK-HLYIGMSSGGVFES--TD 206 (394)
T ss_dssp EEEEEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTT-CEEEEEETBEEEEE--SS
T ss_pred EEEEecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCC-EEEEEECCCCEEEE--CC
Confidence 44444455555543 33332222211 1235778888654333 34444444444332 22
Q ss_pred CCceE-eecC--C-----------CCeEEEEEEcCC-CCEEEEEeeCCCCCeeEEEecCCCceEeeeeec-ccc-ccCce
Q 001403 511 LGARV-DYDA--P-----------GLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-LQL-QHNSV 573 (1084)
Q Consensus 511 ~~~~~-~~~~--~-----------~~~i~~~~~s~d-~~~l~~~~~~~~~~~~i~~wd~~~~~~~~~~~~-~~~-~~~~v 573 (1084)
..... .... . ...+.++++.|+ ...++++.. . .|+..+- .++.-..+.. ... ....+
T Consensus 207 gG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~----~-gl~~s~D-~G~tW~~~~~~l~~~~~~~~ 280 (394)
T 3b7f_A 207 AGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH----C-GIYRMDR-REGVWKRIGDAMPREVGDIG 280 (394)
T ss_dssp TTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET----T-EEEEEET-TTTEEECGGGGSCTTTCSCE
T ss_pred CCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC----C-eEEEeCC-CCCcceECCCCCCCCCccce
Confidence 22211 1110 0 134888999886 355655542 2 2444432 2322222221 110 00235
Q ss_pred EEEEEcCC-CCEEEEEEC-----------CCcEEEEECCC-CeEEEEEcC--CCCC--C--CcceEEEecC-CCEEEEEE
Q 001403 574 SVVHFDTA-KDQILAAGD-----------DHVIKIWDMNK-VQLLTTIDA--GGGL--P--ENPRICFNKN-GTLLAVIA 633 (1084)
Q Consensus 574 ~~~~~s~~-~~~l~~~~~-----------dg~i~iwd~~~-~~~~~~~~~--~~~~--~--~v~~v~~s~~-~~~l~~~~ 633 (1084)
..+.++|. ...++++.. ++...+|...+ |+.-..+.. .... . ....++++|. ...|++++
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~ 360 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGT 360 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEEC
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEe
Confidence 67788763 344555432 33345555443 343333321 1100 0 1236888874 34566666
Q ss_pred CCCeEEEEEcCCCCeeeeccccccceeEEEE
Q 001403 634 NENRIKILETPESNSVDAAGVLSDNLRKLSV 664 (1084)
Q Consensus 634 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~ 664 (1084)
.++.|..- ...++....+......+.++++
T Consensus 361 ~~g~l~~S-~D~G~tW~~~~~~lp~~~~v~~ 390 (394)
T 3b7f_A 361 TGGEIWAS-ADEGEHWQCIASHLPHIYAVQS 390 (394)
T ss_dssp TTSCEEEE-SSTTSBCEEEECSCSCEEEEEE
T ss_pred CCCeEEEE-CCCCCCceEcccCCCCeeEEEE
Confidence 55554432 2333444444333334544444
No 383
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=45.72 E-value=84 Score=27.93 Aligned_cols=16 Identities=13% Similarity=-0.068 Sum_probs=9.4
Q ss_pred hcCcCHHHHHHHhccc
Q 001403 45 ILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 45 i~~g~w~~~~~~l~~~ 60 (1084)
...|+|++|+..+.+.
T Consensus 66 ~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 66 QAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHH
Confidence 4556666666665553
No 384
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=45.10 E-value=1.6e+02 Score=25.97 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=56.3
Q ss_pred hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHH
Q 001403 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1084)
Q Consensus 21 ~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~ 95 (1084)
+.++...+++-.....+ ...=+-....|+|++|++.+.+.-.++.+. ..+.+ ..-.-+...|+.++|+.
T Consensus 13 ~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~--~~a~~----~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 13 VERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERD--PKAHR----FLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHH----HHHHHHHHcCchHHHHH
Confidence 45555666655544333 111233567899999999998853332221 11222 22223356799999999
Q ss_pred HHHhhccccCCCCHHHHHHHHHHhcc
Q 001403 96 ILKKDLKDFAPGNEELFKELAQLLTL 121 (1084)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1084)
.+++-+. +.+.+.+-+..|+.++..
T Consensus 87 ~~~~al~-~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 87 CYRRSVE-LNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 9998554 334467778888887664
No 385
>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}
Probab=44.10 E-value=71 Score=36.45 Aligned_cols=64 Identities=14% Similarity=0.252 Sum_probs=48.1
Q ss_pred eEEEEEEcCCCCEEEEEeeCC--------CCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEE
Q 001403 523 GCTRMAYSANGRRLFSCGTSK--------EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA 588 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~~--------~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 588 (1084)
..-.|+|+|+|++++.--.+. .+++.+.+.+..+++..+.+.++. ...++.++|+||++.|++.
T Consensus 477 ~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~--gaE~TG~~fspDg~tlfvn 548 (592)
T 3zwu_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVG 548 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEE
T ss_pred CCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCC--CccCcCeeECCCCCEEEEE
Confidence 456799999999665432111 134567888888999888888776 5789999999999888775
No 386
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=43.42 E-value=2.3e+02 Score=32.91 Aligned_cols=35 Identities=11% Similarity=0.250 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeec
Q 001403 838 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 875 (1084)
Q Consensus 838 i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~ 875 (1084)
|.++.+ +..++++-+.|+++|+|++.+++++....
T Consensus 224 Is~~~~---~~~fLftL~~Dh~LRiWsL~t~~lv~t~D 258 (729)
T 3f7f_A 224 ISCKLF---HERYLIVLTQNCHLKIWDLTSFTLIQDYD 258 (729)
T ss_dssp EEEEEE---TTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred EEEecc---CCcEEEEEEcCCeEEEEEcCCCceEEeec
Confidence 444444 46799999999999999999999876654
No 387
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=41.88 E-value=1.2e+02 Score=25.44 Aligned_cols=87 Identities=8% Similarity=-0.057 Sum_probs=47.0
Q ss_pred HHHHHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHh
Q 001403 9 VFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1084)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~E 83 (1084)
..+...++...-|.++...+++-.....+ ...-.-....|+|++|+.++.+........ ..+.+.+ -.-
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~l----a~~ 93 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTF--IKGYTRK----AAA 93 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc--hHHHHHH----HHH
Confidence 34444444444577777777765544332 222233466788888888877652222111 1122111 112
Q ss_pred hhcCCCHHHHHHHHHhhc
Q 001403 84 ALDGHDIAKALNILKKDL 101 (1084)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1084)
+...++.++|+..+++-+
T Consensus 94 ~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 345678888888887743
No 388
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=41.17 E-value=5e+02 Score=30.51 Aligned_cols=218 Identities=12% Similarity=0.119 Sum_probs=100.7
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeeeccc-------ccCEEEEEEcC-CC-CEEEEEeC-C-----Cc
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-------SKRVTGLVFSD-AL-NILVSSGG-D-----AQ 901 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l~~h-------~~~V~~l~~sp-d~-~~l~s~s~-d-----g~ 901 (1084)
.|..++++|.+...+.++...|.|+.++= .|+.=..+..+ ...|.+|++.| +. .+++..+. . +.
T Consensus 24 ~i~~i~~~p~~~~~~~~~~~~ggv~rS~D-~G~tW~~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~~~~~~~~~~~~ 102 (737)
T 2cn3_A 24 FMPGIVFNETEKDLIYARAAIGGAYRWDP-STETWIPLLDHFQMDEYSYYGVESIATDPVDPNRVYIVAGMYTNDWLPNM 102 (737)
T ss_dssp CCCEEEECSSSTTCEEEECSSSCEEEEET-TTTEEEECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEECSCSSSSSCCC
T ss_pred eeeEEEECCCCCCEEEEEecCCcEEEeCC-CCCCEEECcCccCcccccCCCcceEEeCCCCCCEEEEEecccccccccCC
Confidence 79999999965566777776777666542 23221222111 24699999998 33 34443321 1 12
Q ss_pred EEEEeCCCCceeeeeeeecCC-CC-ccCCCCceEEEEccCC-CEEEEEe-CCeEEEEEcCC-cceeeEeec--C------
Q 001403 902 IFVWDVDGWGIQTCRSLQTPD-GV-MTLAPSETHIQFHKDQ-TRFLLVH-ETHLAIYEAEE-LTCLKQWFP--I------ 968 (1084)
Q Consensus 902 I~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~v~~~~~s~dg-~~la~~~-d~~i~vwd~~~-~~~~~~~~~--~------ 968 (1084)
..||....+-..-........ +. ......+..+++.|.. ..+.++. .+. .||...+ |+.-..... .
T Consensus 103 ~~l~~S~DgG~TW~~~~~~~~~~~~~~g~~~~~~l~~~p~~~~~v~~g~~~g~-gl~~S~DgG~tW~~~~~~~~~~~~~~ 181 (737)
T 2cn3_A 103 GAILRSTDRGETWEKTILPFKMGGNMPGRSMGERLAIDPNDNRILYLGTRCGN-GLWRSTDYGVTWSKVESFPNPGTYIY 181 (737)
T ss_dssp CEEEEESSSSSSCEEEECSSCCCTTSTTTTSCCCEEECSSCTTCEEEECSTTC-CEEEESSTTSSCEECTTCCCCCCCBS
T ss_pred ccEEEeCCCCCCcccCCCCcccCCCcCcccccceEEECCCCCCEEEEeeccCC-cEEEeCCCCcceecccCCCCCccccc
Confidence 445544432211111111110 00 0000124678998853 4455544 211 2343332 322211110 0
Q ss_pred --------CCCCEEEEEEccCC-------CEEEEEeCCCcEEEEEcCCCceeEEeccccccCCCCcccceeeeEEEECCC
Q 001403 969 --------SSVPISQATFSCDC-------RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSCLHVYPHAIAAHPL 1033 (1084)
Q Consensus 969 --------h~~~v~~l~fs~dg-------~~l~t~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~ 1033 (1084)
....+..+.+.|.. ..++++..|+.-.||.-..+-.-.... .-++.. ..+..+.++|
T Consensus 182 ~p~~~~~~~~~g~~~v~~dp~~~~~~~~~~~v~~~~~~~~~~v~~S~DgG~tW~~~--~~~p~~-----~~~~~~~~~~- 253 (737)
T 2cn3_A 182 DPNFDYTKDIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTDGGVTWKAV--PGQPKG-----LLPHHGVLAS- 253 (737)
T ss_dssp CTTSTTTCSBCCEEEEEECGGGSCTTSCCSCEEEEESCSSCCEEEESSTTSCCEEC--TTCCCS-----SEEEEEEECT-
T ss_pred CcccccccCCCCEEEEEcCCCCcccCCCCCEEEEEecCCCccEEEEcCCCCceEEC--CCCCCc-----ccceEEEECC-
Confidence 11247778888743 245555555433345444332111111 111211 1223455777
Q ss_pred CCCEEEEEeC-------CCcEEEEcCCCCCCCcccCCC
Q 001403 1034 KPTQFAVGLT-------NGEVYVIEPNEPGDTWAVLPP 1064 (1084)
Q Consensus 1034 d~~~l~~~~~-------dg~v~vw~~~~~~~~~~~~~~ 1064 (1084)
++...++... +..-.+|.....+.+|....+
T Consensus 254 ~~~l~~~~~d~~g~y~~~~~g~v~~s~d~G~tW~~i~~ 291 (737)
T 2cn3_A 254 NGMLYITYGDTCGPYDGNGKGQVWKFNTRTGEWIDITP 291 (737)
T ss_dssp TSEEEEEEESSCCSSCCSCCEEEEEEETTTCCEEECCS
T ss_pred CCeEEEEecCCCCccccccCceEEEEeCCCCCEEEccC
Confidence 3444444332 134567776678888886555
No 389
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=40.91 E-value=12 Score=47.54 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=33.4
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEeccc
Q 001403 972 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1011 (1084)
Q Consensus 972 ~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~~ 1011 (1084)
.+.+++..++..+|+|-+.|+++|||++.++.++......
T Consensus 239 ~~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~DL~ 278 (1139)
T 4fhn_B 239 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIELS 278 (1139)
T ss_dssp CBSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEEECC
T ss_pred eeEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEeechh
Confidence 4455667788899999999999999999999998876533
No 390
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*
Probab=39.93 E-value=5.4e+02 Score=30.54 Aligned_cols=61 Identities=8% Similarity=0.087 Sum_probs=34.2
Q ss_pred CCCccEEEecCCC-CEEEEEe-CCeEEEEEcCCceeEEEEcCC-------CCCeEEEEEcCCCCcEEEEEe
Q 001403 794 QEAVPCFALSKND-AYLFSAS-GGVISLYIVMTFKTILTIMPP-------SPTATSLAFNPHDNNVIAIGM 855 (1084)
Q Consensus 794 ~~~v~~l~~s~dg-~~l~~~s-dg~i~vwd~~~~~~~~~~~~~-------~~~i~~l~~s~~d~~~la~g~ 855 (1084)
...|.+|+++|.. ..+.++. .+.|...+ +.|+.-..+..+ ...+.+++++|.+...+.++.
T Consensus 14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~ 83 (789)
T 1sqj_A 14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQ 83 (789)
T ss_dssp CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEe
Confidence 4589999999863 3344444 45544333 233333333322 246999999984444555544
No 391
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=39.48 E-value=85 Score=39.61 Aligned_cols=37 Identities=16% Similarity=0.262 Sum_probs=30.6
Q ss_pred CeEEEEEcCCCCcEEEEEeCCCeEEEEEcCCceeeeee
Q 001403 837 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 874 (1084)
Q Consensus 837 ~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~~~~~~~l 874 (1084)
.+.+++..+ +..++++-+.|+++|||++.+++++.+.
T Consensus 239 ~~vs~~~~~-~~~~lftL~~D~~LRiWsl~t~~~v~t~ 275 (1139)
T 4fhn_B 239 TIISMIFLS-TYNVLVMLSLDYKLKVLDLSTNQCVETI 275 (1139)
T ss_dssp CBSCCEEET-TTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred eeEEeeccC-CccEEEEEeCCCEEEEEECCCCCeEEee
Confidence 345566666 7789999999999999999999987664
No 392
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=38.41 E-value=94 Score=26.21 Aligned_cols=81 Identities=9% Similarity=0.066 Sum_probs=43.7
Q ss_pred hhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCC
Q 001403 15 FLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHD 89 (1084)
Q Consensus 15 ~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~ 89 (1084)
++..--|.++...+++=..+..+ ...=.-....|+|++|+..+.+.-.++... ....+ ..-.=+...|+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~----~lg~~~~~~~~ 87 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF--VRAYI----RKATAQIAVKE 87 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc--HHHHH----HHHHHHHHHhC
Confidence 33444477777777664433222 223333456788888888887752222221 11222 11222345688
Q ss_pred HHHHHHHHHhhc
Q 001403 90 IAKALNILKKDL 101 (1084)
Q Consensus 90 ~~~a~~~l~~~l 101 (1084)
.++|+..+++-+
T Consensus 88 ~~~A~~~~~~al 99 (126)
T 3upv_A 88 YASALETLDAAR 99 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887743
No 393
>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*
Probab=38.22 E-value=1.3e+02 Score=33.93 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=46.9
Q ss_pred eEEEEEEcCCCCEEEEEeeC--------CCCCeeEEEecCCCceEeeeeeccccccCceEEEEEcCCCCEEEEEE
Q 001403 523 GCTRMAYSANGRRLFSCGTS--------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 589 (1084)
Q Consensus 523 ~i~~~~~s~d~~~l~~~~~~--------~~~~~~i~~wd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 589 (1084)
....++|.++|.+.+..-.. +.+...++.++..+++....+.+.. ...++.++|+||++.|+++-
T Consensus 477 sPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~--~aEpnGiafSPD~ktLfV~v 549 (592)
T 4a9v_A 477 SPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPI--GCEVTGISFSPDQKTLFVGI 549 (592)
T ss_dssp CEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCT--TCEEEEEEECTTSSEEEEEE
T ss_pred CCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCC--CccccCCEECCCCCEEEEEE
Confidence 56789999999877733211 1134478888988898877776543 35789999999999888753
No 394
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=37.41 E-value=1.7e+02 Score=29.69 Aligned_cols=13 Identities=8% Similarity=0.179 Sum_probs=6.8
Q ss_pred CcCHHHHHHHhcc
Q 001403 47 DGKWEDVEQYLSS 59 (1084)
Q Consensus 47 ~g~w~~~~~~l~~ 59 (1084)
.|++++|++.+.+
T Consensus 78 ~~~~~~A~~~l~~ 90 (291)
T 3mkr_A 78 HSRRDAIVAELDR 90 (291)
T ss_dssp STTHHHHHHHHHH
T ss_pred CCcHHHHHHHHHH
Confidence 4455555555544
No 395
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=37.26 E-value=1.3e+02 Score=26.23 Aligned_cols=14 Identities=29% Similarity=0.843 Sum_probs=6.6
Q ss_pred cCcCHHHHHHHhcc
Q 001403 46 LDGKWEDVEQYLSS 59 (1084)
Q Consensus 46 ~~g~w~~~~~~l~~ 59 (1084)
..|+|++|+..+..
T Consensus 30 ~~g~~~~A~~~~~~ 43 (142)
T 2xcb_A 30 QAGKWDDAQKIFQA 43 (142)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HHccHHHHHHHHHH
Confidence 34455555444444
No 396
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=35.86 E-value=3.8e+02 Score=27.50 Aligned_cols=237 Identities=9% Similarity=0.021 Sum_probs=123.8
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeEE---------EEcCCCCCeEEEEEcCCCCcEEEEEeCCCeEEEEEcCC-------
Q 001403 805 NDAYLFSAS-GGVISLYIVMTFKTIL---------TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS------- 867 (1084)
Q Consensus 805 dg~~l~~~s-dg~i~vwd~~~~~~~~---------~~~~~~~~i~~l~~s~~d~~~la~g~~dg~i~iwd~~~------- 867 (1084)
+..+++..+ +|.|+-..+...+... .+. ....+..+.... ....++..+..|.++-+....
T Consensus 7 ~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lk-e~D~l~~~~~~~-~~~~ll~~T~~G~~~~~~~~~ip~~~r~ 84 (312)
T 1suu_A 7 KENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLN-DGDEIVIALCVN-THDYLFMISNEGKLYLINAYEIKDSSRA 84 (312)
T ss_dssp -CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEEE-TTCEEEEEETTSEEEEEEGGGSCC----
T ss_pred CCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccC-CCCEEEEEEEEC-CCCEEEEEECCCeEEEEEHHHCCCCCcc
Confidence 445566555 6888877765432211 122 223454554444 455677788899877766532
Q ss_pred --ceee---eeecccccCEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcee---eeeeeecCCCCccCCCCceEEEE
Q 001403 868 --SEVI---SKLEGHSKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGWGIQ---TCRSLQTPDGVMTLAPSETHIQF 936 (1084)
Q Consensus 868 --~~~~---~~l~~h~~~V~~l~~sp---d~~~l~s~s~dg~I~iwd~~~~~~~---~~~~~~~~~~~~~~~~~v~~~~~ 936 (1084)
|..+ -.+. ....|.++...+ +..+|+..+..|.++.-.+..-... ....+....+ ..+..+..
T Consensus 85 ~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~-----d~lv~~~~ 158 (312)
T 1suu_A 85 SKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDK-----DFVTSAEI 158 (312)
T ss_dssp ---CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTT-----CCEEEEEE
T ss_pred CCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCC-----CEEEEEEE
Confidence 1111 1122 234466554433 4678888999999999887653211 1112221111 24555544
Q ss_pred c-cCCCEEEEEeCCeEEEEEcCCcce-------eeEeecCCCCCEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEe
Q 001403 937 H-KDQTRFLLVHETHLAIYEAEELTC-------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1008 (1084)
Q Consensus 937 s-~dg~~la~~~d~~i~vwd~~~~~~-------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~ 1008 (1084)
. ++..+++++.+|.+..+....-.. +..........|.++....++..|++.+..|..+..++..-....+-
T Consensus 159 ~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~ 238 (312)
T 1suu_A 159 VFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRG 238 (312)
T ss_dssp ECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTT
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCC
Confidence 4 444455557888888887653111 11111112456667666566677888899999999988754333221
Q ss_pred ccccccCCCC--cccceeeeEEEECCCCCCEEEEEeCCCcEEEEcC
Q 001403 1009 LSTAYLRPTT--SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1052 (1084)
Q Consensus 1009 ~~~~~~~~~~--~~~~v~~~~~~~~p~d~~~l~~~~~dg~v~vw~~ 1052 (1084)
........-. ....+.. ...+.+ +..++..+..|.+.-..+
T Consensus 239 ~kGv~~~~~~k~~~~~lv~-~~~~~~--~~~l~~~t~~g~~~r~~~ 281 (312)
T 1suu_A 239 ATGYTSYKKSDKKAGSVVD-AIAVSE--DDEILLVSKRSKALRTVA 281 (312)
T ss_dssp CCCEECSCTTCTTTCSEEE-EEEECT--TCEEEEEETTCEEEEEEG
T ss_pred CCCEEeeEccCCCCCeEEE-EEEeCC--CCEEEEEeCCCeEEEEEc
Confidence 1000000000 0122222 123443 456777777886655444
No 397
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=35.18 E-value=56 Score=26.50 Aligned_cols=85 Identities=11% Similarity=0.047 Sum_probs=42.9
Q ss_pred HhhhhcC-hHHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcC
Q 001403 14 QFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDG 87 (1084)
Q Consensus 14 q~L~~~g-~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~ 87 (1084)
..+...| |.++...+++=..... + ...=.-....|+|++|+..+.+.......... ..++...-.=++..
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~~~l~~~~~~~ 89 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYN----KDVWAAKADALRYI 89 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTC----HHHHHHHHHHHTTC
T ss_pred HHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccch----HHHHHHHHHHHHHH
Confidence 3333444 6666666655322211 1 22223345678888888888775222211001 11222222223567
Q ss_pred -CCHHHHHHHHHhhcc
Q 001403 88 -HDIAKALNILKKDLK 102 (1084)
Q Consensus 88 -~~~~~a~~~l~~~l~ 102 (1084)
++.++|+.++++-+.
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 90 EGKEVEAEIAEARAKL 105 (112)
T ss_dssp SSCSHHHHHHHHHHGG
T ss_pred hCCHHHHHHHHHHHhh
Confidence 788888888887543
No 398
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=35.10 E-value=1.4e+02 Score=24.76 Aligned_cols=93 Identities=8% Similarity=0.016 Sum_probs=49.2
Q ss_pred HHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCc-cccchhhhHHHHhHHH
Q 001403 10 FLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDN-RYSTKIYFEIRKQNFF 82 (1084)
Q Consensus 10 rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~-~~~~~~~~~l~~q~~~ 82 (1084)
..+.+.+...| |.++...+++=.....+ ...-.-....|+|++|+.++.+....... .........++...-.
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~ 87 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN 87 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHH
Confidence 33444444444 77777777654332221 22233445689999999998875222111 0000011112222222
Q ss_pred hhhcCCCHHHHHHHHHhhcc
Q 001403 83 EALDGHDIAKALNILKKDLK 102 (1084)
Q Consensus 83 Ell~~~~~~~a~~~l~~~l~ 102 (1084)
-+...++.++|+..+++-+.
T Consensus 88 ~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 88 SYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHH
Confidence 33567999999999987544
No 399
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=35.03 E-value=4.6 Score=33.87 Aligned_cols=37 Identities=8% Similarity=0.141 Sum_probs=28.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccc
Q 001403 23 ESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 23 ~s~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
..+..+-+|||+++++..+-+.|. |+||++.+.++++
T Consensus 36 a~~i~vi~~sGL~y~~~pmgT~IE-Ge~devm~vvk~~ 72 (106)
T 1vk8_A 36 DRAIEKISSWGMKYEVGPSNTTVE-GEFEEIMDRVKEL 72 (106)
T ss_dssp HHHHHHHHTTCSCEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 344555568999999877777775 9999999998765
No 400
>2d68_A FOP, FGFR1OP; alpha helical bundle, dimer, cell cycle; 1.60A {Homo sapiens}
Probab=34.19 E-value=39 Score=26.64 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=26.0
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCC
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFY 35 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~ 35 (1084)
+.-||-.||.=.||+-|+..++-|+|..
T Consensus 21 i~~LVrEyLef~~l~~TlsVf~pEs~l~ 48 (82)
T 2d68_A 21 VASLVAEFLQFFNLDFTLAVFQPETSTL 48 (82)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCcchHHhhhhccCCC
Confidence 5678999999999999999999999986
No 401
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=34.13 E-value=1e+02 Score=27.64 Aligned_cols=86 Identities=12% Similarity=0.008 Sum_probs=45.2
Q ss_pred HHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHH
Q 001403 9 VFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFF 82 (1084)
Q Consensus 9 ~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~ 82 (1084)
...+...+...| |.++.+.+++=..+..+ ...=.-....|+|++|+..+.+.-.++... ....+ ..-.
T Consensus 14 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~--~~~~~----~lg~ 87 (164)
T 3sz7_A 14 LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKY--SKAWS----RLGL 87 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHH----HHHH
Confidence 333344444444 77777776664433222 222334556788888888877752222221 11222 1122
Q ss_pred hhhcCCCHHHHHHHHHhh
Q 001403 83 EALDGHDIAKALNILKKD 100 (1084)
Q Consensus 83 Ell~~~~~~~a~~~l~~~ 100 (1084)
=+...|++++|+..+++-
T Consensus 88 ~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH
Confidence 234568888888888764
No 402
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=33.67 E-value=1.2e+02 Score=29.96 Aligned_cols=110 Identities=7% Similarity=0.048 Sum_probs=57.2
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
|+.-...+.+...| |.++...+++-.....+ ...-.-....|++++|+..+.+....+.+. ......+...
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~l 80 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNAT---KAKSADFEYY 80 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTT---TCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCch---hHHHHHHHHH
Confidence 33333444444555 77777777664332211 233345667899999999888752222111 1211222222
Q ss_pred HHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001403 81 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
-.-+...|+.++|+..+++-+.-. ..+.+.+..|+.+..
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 119 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFY 119 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 233355688888888888744422 223444555555443
No 403
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=33.31 E-value=1.1e+02 Score=27.54 Aligned_cols=86 Identities=10% Similarity=0.052 Sum_probs=44.5
Q ss_pred HHHHHHHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHH
Q 001403 7 DLVFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1084)
Q Consensus 7 ~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1084)
+|-+-|.++|.+-+.-+ +=..+..+ ...=......|++++|+..+.++..++... ..+ +-..=
T Consensus 10 ~~~~~l~~~~~~~~~l~------~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~----~~~--~~~lg 77 (151)
T 3gyz_A 10 SISTAVIDAINSGATLK------DINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYN----VDY--IMGLA 77 (151)
T ss_dssp HHHHHHHHHHHTSCCTG------GGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHH--HHHHH
T ss_pred HHHHHHHHHHHCCCCHH------HHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHH--HHHHH
Confidence 45666777777665322 21222222 112234456788888888887752222211 111 11112
Q ss_pred HhhhcCCCHHHHHHHHHhh--cccc
Q 001403 82 FEALDGHDIAKALNILKKD--LKDF 104 (1084)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~--l~~~ 104 (1084)
.-+...|++++|+.++++- +.|-
T Consensus 78 ~~~~~~g~~~~Ai~~~~~al~l~P~ 102 (151)
T 3gyz_A 78 AIYQIKEQFQQAADLYAVAFALGKN 102 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHccHHHHHHHHHHHHhhCCC
Confidence 2234567888888888874 5554
No 404
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=31.95 E-value=4.3e+02 Score=27.03 Aligned_cols=199 Identities=11% Similarity=0.140 Sum_probs=103.1
Q ss_pred cCCCeEEEeecCCceEEeeccCCccCcCcccceecCCeeecCCCCCccccccCcCCCCCCCccEEEecCCCCEEEEEeCC
Q 001403 736 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG 815 (1084)
Q Consensus 736 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~dg~~l~~~sdg 815 (1084)
++...+++.+.+|.++--.+........ .+.-.....+. ....-+..+..+.....++..+.|
T Consensus 6 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~---------------~~~g~~~~~lk--e~D~l~~~~~~~~~~~ll~~T~~G 68 (312)
T 1suu_A 6 QKENIVVMLTKKGFLKRLSQNEYKLQGT---------------GGKGLSSFDLN--DGDEIVIALCVNTHDYLFMISNEG 68 (312)
T ss_dssp --CEEEEEEETTCBEEEEEGGGSCBCCS---------------SCCCEECCCCC--TTCCEEEEEEEETTCEEEEEETTS
T ss_pred CCCCEEEEEeCCCEEEEeEHHHhhcccc---------------CCCCceecccC--CCCEEEEEEEECCCCEEEEEECCC
Confidence 3455688888899888655432111000 00001111111 122233333344444455555568
Q ss_pred eEEEEEcCCc---------eeE---EEEcCCCCCeEEEEEcCC--CCcEEEEEeCCCeEEEEEcCC-------ceeeeee
Q 001403 816 VISLYIVMTF---------KTI---LTIMPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARS-------SEVISKL 874 (1084)
Q Consensus 816 ~i~vwd~~~~---------~~~---~~~~~~~~~i~~l~~s~~--d~~~la~g~~dg~i~iwd~~~-------~~~~~~l 874 (1084)
.++-+....- ..+ ..+. ....|.++...++ +..+|+..+..|.++...+.. |.....+
T Consensus 69 ~~~~~~~~~ip~~~r~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L 147 (312)
T 1suu_A 69 KLYLINAYEIKDSSRASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKL 147 (312)
T ss_dssp EEEEEEGGGSCC-------CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCC
T ss_pred eEEEEEHHHCCCCCccCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEec
Confidence 7666655321 110 1122 2234555543321 356788899999999888743 3333334
Q ss_pred cccccCEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCce-----eeeeeeecCCCCccCCCCceEEEEccCCCEEE-EEeC
Q 001403 875 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI-----QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHE 948 (1084)
Q Consensus 875 ~~h~~~V~~l~~spd~~~l~s~s~dg~I~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la-~~~d 948 (1084)
.. .+.+..+....++..++..+.+|.+..+.++.-.. .....+....+ ..+..+..-.++..++ ++..
T Consensus 148 ~~-~d~lv~~~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~-----d~vv~~~~v~~~~~l~~vt~~ 221 (312)
T 1suu_A 148 ND-KDFVTSAEIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEG-----DLFVKVLSVKENPYLLIVSEN 221 (312)
T ss_dssp CT-TCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTT-----CCEEEEEECTTCSEEEEEETT
T ss_pred CC-CCEEEEEEEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCC-----CEEEEEEEECCCCeEEEEECC
Confidence 43 56677776666567788899999999988765111 01112222111 2455665544555444 4778
Q ss_pred CeEEEEEcCC
Q 001403 949 THLAIYEAEE 958 (1084)
Q Consensus 949 ~~i~vwd~~~ 958 (1084)
|..+...+..
T Consensus 222 G~~kr~~~~e 231 (312)
T 1suu_A 222 GYGKRLNMSK 231 (312)
T ss_dssp SEEEEEEGGG
T ss_pred CceEEEEHHH
Confidence 8888887753
No 405
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=31.33 E-value=2e+02 Score=23.04 Aligned_cols=88 Identities=8% Similarity=-0.056 Sum_probs=45.6
Q ss_pred HHHHHHhhhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHh
Q 001403 9 VFLILQFLNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1084)
Q Consensus 9 ~rli~q~L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~E 83 (1084)
..+...++...-|.++...+++=-....+ ...-.-....|+|++|+..+.+........ ..+.+ ..-.-
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~----~~a~~ 81 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDW--GKGYS----RKAAA 81 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHH----HHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCccc--HHHHH----HHHHH
Confidence 34444445555577777766653322211 222233455788888888877652222111 11111 11112
Q ss_pred hhcCCCHHHHHHHHHhhcc
Q 001403 84 ALDGHDIAKALNILKKDLK 102 (1084)
Q Consensus 84 ll~~~~~~~a~~~l~~~l~ 102 (1084)
+...|+..+|+..+++-+.
T Consensus 82 ~~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 82 LEFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 3456788888888877443
No 406
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=31.09 E-value=1.5e+02 Score=25.24 Aligned_cols=88 Identities=13% Similarity=-0.114 Sum_probs=46.6
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
+....+...+...| |.++...+++=..+..+ ...=.-....|+|++|+..+.......... ..+.+. .
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~----l 83 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQS--VKAHFF----L 83 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH----H
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchh--HHHHHH----H
Confidence 33333444444444 77777776654332222 222333456889999988887752222221 112221 1
Q ss_pred HHhhhcCCCHHHHHHHHHhh
Q 001403 81 FFEALDGHDIAKALNILKKD 100 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~ 100 (1084)
-.-++..|+.++|+..+++-
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHH
Confidence 12234568888888888773
No 407
>2xz2_A CSTF-50, isoform B; RNA-binding protein, 3' END mRNA maturation, transcription; 1.40A {Drosophila melanogaster}
Probab=30.80 E-value=60 Score=24.10 Aligned_cols=31 Identities=19% Similarity=0.090 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHhhhhcChHHHHHHHHHhcCC
Q 001403 4 LNKDLVFLILQFLNEEGFTESAHMLERESRF 34 (1084)
Q Consensus 4 ~~~~~~rli~q~L~~~g~~~s~~~l~~Es~~ 34 (1084)
.|+.+.|||+--|.--||.+.|..|..+.+.
T Consensus 15 ~Re~LYrLIISQL~YDG~~~iA~~L~~~v~~ 45 (66)
T 2xz2_A 15 NREILYRLMISQLMYDGLEKFAMELSMLVKA 45 (66)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHhhcCC
Confidence 3677999999999999999999999998875
No 408
>2cn3_A Xyloglucanase, beta-1,4-xyloglucan hydrolase; glycosylhydrolase, family GH74; HET: GLC BGC GAL; 1.95A {Clostridium thermocellum} PDB: 2cn2_A*
Probab=30.50 E-value=7.2e+02 Score=29.14 Aligned_cols=62 Identities=13% Similarity=0.091 Sum_probs=36.2
Q ss_pred CceEEEEEcCCC-CEEEEEECCCcEEEEECCCCeEEEEEcCCCC-----CCCcceEEEec-CCCEEEEEE
Q 001403 571 NSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNK-NGTLLAVIA 633 (1084)
Q Consensus 571 ~~v~~~~~s~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~-~~~~l~~~~ 633 (1084)
+.|..++++|.. ..++++...+.|+.++-...... .+..... ...+.+++++| +...++++.
T Consensus 23 g~i~~i~~~p~~~~~~~~~~~~ggv~rS~D~G~tW~-~i~~~~~~~~~~~~~i~~i~~dp~~~~~v~v~~ 91 (737)
T 2cn3_A 23 GFMPGIVFNETEKDLIYARAAIGGAYRWDPSTETWI-PLLDHFQMDEYSYYGVESIATDPVDPNRVYIVA 91 (737)
T ss_dssp SCCCEEEECSSSTTCEEEECSSSCEEEEETTTTEEE-ECCTTCCGGGGGGGCEEEEEECSSSTTCEEEEE
T ss_pred ceeeEEEECCCCCCEEEEEecCCcEEEeCCCCCCEE-ECcCccCcccccCCCcceEEeCCCCCCEEEEEe
Confidence 378999999874 56666776677666654333333 3322111 13478899998 434444443
No 409
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=30.13 E-value=2.3e+02 Score=28.49 Aligned_cols=99 Identities=18% Similarity=0.210 Sum_probs=53.2
Q ss_pred hhhcChHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCH
Q 001403 16 LNEEGFTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI 90 (1084)
Q Consensus 16 L~~~g~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~ 90 (1084)
+..--|.++...+++=.....+ ...-+-.+..|++++|+..+.++.....+ . ....-..-++++..++.
T Consensus 128 ~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-----~-~~~~~~~~~~l~~~~~~ 201 (287)
T 3qou_A 128 MQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-----T-RYQGLVAQIELLXQAAD 201 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-----H-HHHHHHHHHHHHHHHTS
T ss_pred HhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-----h-HHHHHHHHHHHHhhccc
Confidence 3333366666655553332222 23334556788888888888876332221 1 11222333445555666
Q ss_pred HHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001403 91 AKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1084)
Q Consensus 91 ~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1084)
.+|+..|++-+.-- +.+.+....|+.++..
T Consensus 202 ~~a~~~l~~al~~~-P~~~~~~~~la~~l~~ 231 (287)
T 3qou_A 202 TPEIQQLQQQVAEN-PEDAALATQLALQLHQ 231 (287)
T ss_dssp CHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHhcC-CccHHHHHHHHHHHHH
Confidence 67777777654422 3455656667666654
No 410
>4asv_A Small glutamine-rich tetratricopeptide repeat-CON protein 2; chaperone, membrane, tail-anchored, post-translational targe; NMR {Saccharomyces cerevisiae} PDB: 4asw_A
Probab=29.21 E-value=31 Score=27.65 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=16.3
Q ss_pred CCchhHHHHHHHHHhhhhc
Q 001403 1 MSKLNKDLVFLILQFLNEE 19 (1084)
Q Consensus 1 ~~~~~~~~~rli~q~L~~~ 19 (1084)
|+..+++++..|+|||+..
T Consensus 15 ~~~skKrLA~sIIdFL~~s 33 (92)
T 4asv_A 15 MSASKEEIAALIVNYFSSI 33 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHh
Confidence 6777899999999999764
No 411
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=28.72 E-value=1e+02 Score=29.26 Aligned_cols=101 Identities=11% Similarity=0.190 Sum_probs=62.0
Q ss_pred ccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHH-HHHHHHhccccccchhccccccCCChHHHHHHHH
Q 001403 68 YSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELF-KELAQLLTLDDIRDHELLSKYYGDALSARKNMML 146 (1084)
Q Consensus 68 ~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~-~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~ 146 (1084)
+...+.-+|.+|..+=.+++|++.+|..+|++-+..-. ..+.+ ..|..++.+.+.. ++-+.+. |=..+++
T Consensus 108 l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~~--s~~kLr~kL~~II~~Kd~~-H~~lqnF------Sy~~~~~ 178 (235)
T 3bu8_A 108 VVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKDP--TTQKLRNDLLNIIREKNLA-HPVIQNF------SYETFQQ 178 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTCG--GGHHHHHHHHHHHHHTCTT-SHHHHTC------CHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCCC--CchHHHHHHHHHHhccCcc-cHHHHhc------cHHHHHH
Confidence 34457888999999999999999999999999777422 23333 3677777765431 1222221 2335666
Q ss_pred HHHhhcccCccccccccCCCCcchHHHHHHHHhHHHHHhhCCC
Q 001403 147 ELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCAN 189 (1084)
Q Consensus 147 ~l~~~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~Q~~~c~~ 189 (1084)
++..++..-.= .++. -||+.|.+-+.++|..
T Consensus 179 ki~~fve~~~~---------~a~~---FLL~~A~Kv~ks~~~~ 209 (235)
T 3bu8_A 179 KMLRFLESHLD---------DAEP---YLLTMAKKALKSESAA 209 (235)
T ss_dssp HHHHHHHTTSC---------CCCC---HHHHHHHHHTTTC---
T ss_pred HHHHHHHHHhc---------ccch---HHHHHHHHHHhhcccc
Confidence 66666554211 2233 5778888888877644
No 412
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=28.25 E-value=1.5e+02 Score=25.34 Aligned_cols=101 Identities=12% Similarity=0.149 Sum_probs=49.4
Q ss_pred hhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccc-hhhhHHHHhHHHhhhcC
Q 001403 15 FLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYST-KIYFEIRKQNFFEALDG 87 (1084)
Q Consensus 15 ~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~-~~~~~l~~q~~~Ell~~ 87 (1084)
.+...| |.++.+.+++=-.+..+ ...=.-....|+|++|+..+.+.-.+....... ..+-.++-..=.-+...
T Consensus 17 ~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~ 96 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQ 96 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHc
Confidence 334444 77777777654333222 122233566789999988877642211111000 00001111111123456
Q ss_pred CCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001403 88 HDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1084)
Q Consensus 88 ~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1084)
+++++|+..+++-|.-. .+++....|..
T Consensus 97 ~~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 97 NDLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp TCHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 88888988888765422 24555554443
No 413
>1kdl_A YOPD protein; yersinia, amphipathic alpha helix, beta turn, structural protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=27.99 E-value=33 Score=19.74 Aligned_cols=16 Identities=31% Similarity=0.509 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHhhhhc
Q 001403 4 LNKDLVFLILQFLNEE 19 (1084)
Q Consensus 4 ~~~~~~rli~q~L~~~ 19 (1084)
+-+||++||-||-...
T Consensus 3 fMkDvlql~qQy~qsh 18 (26)
T 1kdl_A 3 FMKDVLRLIEQYVSSH 18 (26)
T ss_dssp HHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4578999999886543
No 414
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=27.35 E-value=2.7e+02 Score=26.75 Aligned_cols=17 Identities=0% Similarity=-0.185 Sum_probs=9.6
Q ss_pred HhcCcCHHHHHHHhccc
Q 001403 44 MILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 44 ~i~~g~w~~~~~~l~~~ 60 (1084)
....|+|++|+.++.++
T Consensus 81 ~~~~~~~~~A~~~~~~a 97 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKA 97 (252)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34456666666665553
No 415
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=27.26 E-value=4.1e+02 Score=25.34 Aligned_cols=109 Identities=13% Similarity=-0.003 Sum_probs=54.1
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
++...+...+...| |.++.+.+++=..... . ...-.-....|++++|+.++.++...+.. .. ...++...
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~--~~~~~~~l 147 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLY--PE--RSRVFENL 147 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTC--TT--HHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccC--cc--cHHHHHHH
Confidence 34444555555555 6666666654332211 1 23334456688888888888775221011 11 01111122
Q ss_pred HHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001403 81 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
-.-++..|+.++|+..+++-+.-. ..+...+..|+.++.
T Consensus 148 a~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 186 (252)
T 2ho1_A 148 GLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLY 186 (252)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHH
Confidence 222345678888888887744322 223444444544443
No 416
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=26.80 E-value=5.4e+02 Score=26.48 Aligned_cols=194 Identities=10% Similarity=0.094 Sum_probs=96.5
Q ss_pred CCCCEEEEEeCCCEEEEEEccCCcccc-ceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEEE---CC------CC
Q 001403 398 PDGSLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AV------TG 467 (1084)
Q Consensus 398 pdg~~las~~~dg~v~iwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vwd---~~------~g 467 (1084)
|+..++++.+.+|.|+--.+..-+... .-..+.... .+..+....... .++..+..|.+.-.. +. .|
T Consensus 3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~D-~l~~~~~~~t~d--~ll~fT~~Gr~~~~~~~elp~~~r~a~G 79 (323)
T 1wp5_A 3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDTD-RLLAMLEMNTKD--VLLLFTNKGNYLYCPVHELPDIRWKDLG 79 (323)
T ss_dssp SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTTC-CEEEEEEEETTS--EEEEEETTSEEEEEEGGGSCBCCTTSCC
T ss_pred cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCCC-EEEEEEEECCCC--EEEEEECCCEEEEEEHHHCcCCCCCCCC
Confidence 566778889999999877654211000 001233332 344444444444 344455567654443 32 23
Q ss_pred ceeeE---eccCCCcEEEEeeccc-CCCcEEEEEecCCeEEEEECCCC------CceEeecC-CCCeEEEEEEcCCCCEE
Q 001403 468 SRTYS---FEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSL------GARVDYDA-PGLGCTRMAYSANGRRL 536 (1084)
Q Consensus 468 ~~~~~---~~~h~~~v~~~~~~~~-~~~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~-~~~~i~~~~~s~d~~~l 536 (1084)
..+.. +. ....|.++..... .++.+++.++.+|.++.-.+... .....+.. .+..+..+........+
T Consensus 80 ~~i~~~i~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i 158 (323)
T 1wp5_A 80 QHIANIIPID-RDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNEL 158 (323)
T ss_dssp EEGGGTSCCC-TTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEE
T ss_pred cChhhccCCC-CCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEE
Confidence 32221 22 2334555432221 23468999999999998876421 12222211 22344444444444555
Q ss_pred EEEeeCCCCCeeEEEecCCC----ce---EeeeeeccccccCceEEEEEcCCCC-EEEEEECCCcEEEEECCC
Q 001403 537 FSCGTSKEGESFLVEWNESE----GA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNK 601 (1084)
Q Consensus 537 ~~~~~~~~~~~~i~~wd~~~----~~---~~~~~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~iwd~~~ 601 (1084)
+..+. .+.+..++... ++ -+.-+.-.. +..|.++..-+++. .+++.+..|..+..++..
T Consensus 159 ~l~T~----~G~~irf~~~ev~~~gR~a~GV~~i~L~~--~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e 225 (323)
T 1wp5_A 159 FLVTH----NGYALWFDESEVSIVGVRAAGVKGMNLKE--GDYIVSGQLITSKDESIVVATQRGAVKKMKLTE 225 (323)
T ss_dssp EEEET----TSEEEEEEGGGSCBCCSSCCCEECCCCCT--TCCEEEEEEECCTTCEEEEEETTSEEEEEEGGG
T ss_pred EEEeC----CCcEEEEEHHHCcccCCCCcCEEEEEeCC--CCEEEEEEEEcCCCcEEEEEECCCceEEEEHHH
Confidence 55554 44555554432 11 111111111 24566654444445 788888888888776643
No 417
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=26.07 E-value=6e+02 Score=26.77 Aligned_cols=109 Identities=9% Similarity=0.095 Sum_probs=59.4
Q ss_pred cCCCCEEEEEeCCCEEEEEEccCCc-------cccceeeeecccccEeEEEeecCCCcEEEEEEeCCCcEEEE---ECC-
Q 001403 397 SPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW---DAV- 465 (1084)
Q Consensus 397 spdg~~las~~~dg~v~iwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~l~l~s~~~d~~i~vw---d~~- 465 (1084)
-|+..++++.+.+|.|+--.+..-. -+.. ..++ ....+..+....... .++..+..|.+.-. ++.
T Consensus 4 I~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~-~~lk-e~D~l~~~~~~~t~d--~ll~fT~~G~~~~~~~~eip~ 79 (370)
T 3l6v_A 4 IAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSA-ASTK-EEDFIDQLWLVNTHD--TLLTFTSSGKVFWLPVHQLPE 79 (370)
T ss_dssp CCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEE-EECS-CCCCEEEEEEECTTC--EEEEEETTSEEEEEEGGGSCB
T ss_pred ccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCcee-cccC-CCCEEEEEEEecCCC--EEEEEeCCCeEEEEEHHHCcC
Confidence 4677889999999999876554211 1111 1222 233455555554444 34444456655443 332
Q ss_pred -----CCceeeE---eccCCCcEEEEeecc-cCCCcEEEEEecCCeEEEEECCC
Q 001403 466 -----TGSRTYS---FEGHGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDS 510 (1084)
Q Consensus 466 -----~g~~~~~---~~~h~~~v~~~~~~~-~~~~~~l~s~s~dg~i~iwd~~~ 510 (1084)
.|..+.. +. ....|.++.... ..++.+|+.++..|.++...+..
T Consensus 80 ~~r~a~G~~i~~ll~L~-~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e 132 (370)
T 3l6v_A 80 AGSNARGRPIINWIPLE-SGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSE 132 (370)
T ss_dssp CCTTSCCEEGGGSCCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGG
T ss_pred CCcccCCcCHhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHH
Confidence 2332222 22 344565554322 12446899999999999887643
No 418
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=25.92 E-value=2.7e+02 Score=22.74 Aligned_cols=86 Identities=13% Similarity=0.005 Sum_probs=42.6
Q ss_pred HHHHHhhhhcC-hHHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHh
Q 001403 10 FLILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1084)
Q Consensus 10 rli~q~L~~~g-~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~E 83 (1084)
..+...+...| |.++...+++=..... . ...-.-....|+|++|+..+.+........ ..+.+.+- .=
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~----~~ 89 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAY--SKAYGRMG----LA 89 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH----HH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccC--HHHHHHHH----HH
Confidence 33344444444 6666666554322211 1 222333456788888888877642221111 11221111 12
Q ss_pred hhcCCCHHHHHHHHHhhc
Q 001403 84 ALDGHDIAKALNILKKDL 101 (1084)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1084)
+...++.++|+..+++-+
T Consensus 90 ~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHH
Confidence 345678888888887643
No 419
>4h3o_A Lectin; cadmium, plant protein; 2.17A {Allium sativum} PDB: 1kj1_A* 1bwu_P* 1kj1_D* 1bwu_Q* 1bwu_A* 1bwu_D*
Probab=25.88 E-value=2.8e+02 Score=22.88 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=16.6
Q ss_pred cEEEecCCCCEEEEEeCCeEEEEEcCC
Q 001403 798 PCFALSKNDAYLFSASGGVISLYIVMT 824 (1084)
Q Consensus 798 ~~l~~s~dg~~l~~~sdg~i~vwd~~~ 824 (1084)
..+.+..||.+++...++. .+|...+
T Consensus 53 ~~L~l~~dGnLvL~d~~~~-~vWss~t 78 (105)
T 4h3o_A 53 CSAVLQSDGNFVVYDSSGR-SLWASHS 78 (105)
T ss_dssp CEEEECTTSCEEEECTTCC-EEEECCC
T ss_pred EEEEEeCCccEEEECCCcE-EEEEecC
Confidence 3577888888776654444 4676543
No 420
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=25.87 E-value=2.6e+02 Score=22.56 Aligned_cols=99 Identities=14% Similarity=0.263 Sum_probs=48.2
Q ss_pred HHHhhhhcC-hHHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhh
Q 001403 12 ILQFLNEEG-FTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1084)
Q Consensus 12 i~q~L~~~g-~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell 85 (1084)
+...+...| |.++.+.+++-..... + ...-.-....|++++|+.++.+........ ....+.+ -.-+.
T Consensus 15 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----a~~~~ 88 (125)
T 1na0_A 15 LGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN--AEAWYNL----GNAYY 88 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCcc--HHHHHHH----HHHHH
Confidence 333344444 6666666655332211 1 223334456788888888877652221111 1111111 11224
Q ss_pred cCCCHHHHHHHHHhhccccCCCCHHHHHHHHH
Q 001403 86 DGHDIAKALNILKKDLKDFAPGNEELFKELAQ 117 (1084)
Q Consensus 86 ~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1084)
..++.++|+..+++-+.- ...+++....|..
T Consensus 89 ~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~ 119 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL-DPNNAEAKQNLGN 119 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHH
Confidence 567888888888764332 1233444444443
No 421
>3f7f_A Nucleoporin NUP120; nuclear pore complex, macromolecular assembly, membrane coat, nucleocytoplasmic transport, beta-propeller; 2.60A {Saccharomyces cerevisiae} PDB: 3h7n_A 3hxr_A
Probab=25.81 E-value=83 Score=36.58 Aligned_cols=37 Identities=16% Similarity=0.095 Sum_probs=30.1
Q ss_pred CEEEEEEccCCCEEEEEeCCCcEEEEEcCCCceeEEecc
Q 001403 972 PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1010 (1084)
Q Consensus 972 ~v~~l~fs~dg~~l~t~~~dg~i~vwd~~~~~~~~~~~~ 1010 (1084)
.|.++.+ +..+|++-+.|.++|+|++.+++++.....
T Consensus 223 ~Is~~~~--~~~fLftL~~Dh~LRiWsL~t~~lv~t~DL 259 (729)
T 3f7f_A 223 VISCKLF--HERYLIVLTQNCHLKIWDLTSFTLIQDYDM 259 (729)
T ss_dssp EEEEEEE--TTTEEEEEETTCEEEEEETTTTEEEEEEET
T ss_pred eEEEecc--CCcEEEEEEcCCeEEEEEcCCCceEEeecc
Confidence 4555444 578999999999999999999998877654
No 422
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=25.63 E-value=2.7e+02 Score=22.78 Aligned_cols=99 Identities=11% Similarity=0.229 Sum_probs=51.9
Q ss_pred hhhhcChHHHHHHHHHhcCCCh---h--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCC
Q 001403 15 FLNEEGFTESAHMLERESRFYF---D--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHD 89 (1084)
Q Consensus 15 ~L~~~g~~~s~~~l~~Es~~~~---~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~ 89 (1084)
++...-|.++.+.+++=..... . ...-.-....|++++|+.++.+........ ....+.+ -.-+...|+
T Consensus 11 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----~~~~~~~~~ 84 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL----GNAYYKQGD 84 (136)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHHHHTTTC
T ss_pred HHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCc--hHHHHHH----HHHHHHhcC
Confidence 3344447777666655322211 1 222334556799999999988752222111 1122211 112356789
Q ss_pred HHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001403 90 IAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 90 ~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
.++|+..+++-+... ..+...+..++.++.
T Consensus 85 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 85 YDEAIEYYQKALELD-PRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 999999998754422 224444445555443
No 423
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=25.20 E-value=1.3e+02 Score=26.61 Aligned_cols=103 Identities=10% Similarity=0.082 Sum_probs=55.3
Q ss_pred HHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhh
Q 001403 12 ILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1084)
Q Consensus 12 i~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell 85 (1084)
+.....++| |.++.+.+++=..+..+ ...=.-....|++++|+..+.+.-.++.+. ..+.+.+- . =++
T Consensus 37 la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~--~~~~~~la-~---~~~ 110 (150)
T 4ga2_A 37 FAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQ--KDLVLKIA-E---LLC 110 (150)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHHHH-H---HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCC--HHHHHHHH-H---HHH
Confidence 334444555 88888877775544333 122223456899999999988752222221 11222221 1 123
Q ss_pred cCCCHHHHHHH-HHhhccccCCCCHHHHHHHHHHhcc
Q 001403 86 DGHDIAKALNI-LKKDLKDFAPGNEELFKELAQLLTL 121 (1084)
Q Consensus 86 ~~~~~~~a~~~-l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1084)
..++..+|... +++-++ +.+.+++.+.....|+..
T Consensus 111 ~~~~~~~aa~~~~~~al~-l~P~~~~~~~l~~~ll~~ 146 (150)
T 4ga2_A 111 KNDVTDGRAKYWVERAAK-LFPGSPAVYKLKEQLLDC 146 (150)
T ss_dssp HHCSSSSHHHHHHHHHHH-HSTTCHHHHHHHHHHHHT
T ss_pred HcCChHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHH
Confidence 45666565544 454222 334567777777777665
No 424
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=25.07 E-value=2.3e+02 Score=23.25 Aligned_cols=86 Identities=10% Similarity=0.224 Sum_probs=48.4
Q ss_pred HHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHh
Q 001403 10 FLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFE 83 (1084)
Q Consensus 10 rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~E 83 (1084)
..+.+.+...| +.++.+.+++-.....+ ...-.-....|+|++|+..+.......... ..+.+.+ -.-
T Consensus 39 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~l----a~~ 112 (136)
T 2fo7_A 39 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS--AEAWYNL----GNA 112 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTC--HHHHHHH----HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC--hHHHHHH----HHH
Confidence 33444444555 77777766653322211 233345677899999999988752222111 1122211 112
Q ss_pred hhcCCCHHHHHHHHHhhc
Q 001403 84 ALDGHDIAKALNILKKDL 101 (1084)
Q Consensus 84 ll~~~~~~~a~~~l~~~l 101 (1084)
+...|+.++|+..+++-+
T Consensus 113 ~~~~~~~~~A~~~~~~~~ 130 (136)
T 2fo7_A 113 YYKQGDYDEAIEYYQKAL 130 (136)
T ss_dssp HHTTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHH
Confidence 356799999999998743
No 425
>3iug_A RHO/CDC42/RAC GTPase-activating protein RICS; structural genomics consortium (SGC), GAP, alternative splicing, cell junction, cell membrane; 1.77A {Homo sapiens}
Probab=24.93 E-value=67 Score=31.50 Aligned_cols=89 Identities=10% Similarity=0.152 Sum_probs=50.2
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCChhHHHHHHHhcCcC---H---------HHHHHHhcc-cccccCccccchhhh
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK---W---------EDVEQYLSS-FTKVDDNRYSTKIYF 74 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~~~~~~~~~i~~g~---w---------~~~~~~l~~-~~~~~~~~~~~~~~~ 74 (1084)
+|+-+++||++.|+. +=+-+-+|-.-+++.|++.+..|. + ..+-.+|+. |..+++.-+ -+
T Consensus 40 iv~~~i~~i~~~gl~---eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~~dvh~va~lLK~fLreLPePLl----~~ 112 (229)
T 3iug_A 40 VLQSCTAFIERYGIV---DGIYRLSGVASNIQRLRHEFDSEHVPDLTKEPYVQDIHSVGSLCKLYFRELPNPLL----TY 112 (229)
T ss_dssp HHHHHHHHHHHHCCS---TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSTTTTTCHHHHHHHHHHHHHHCSSCTT----CT
T ss_pred HHHHHHHHHHHcCCC---CCCeecCCcHHHHHHHHHHHhcCCCCCccccccccchHHHHHHHHHHHHHCCCCCc----CH
Confidence 677788999999862 334444554556889999887773 1 223333333 222333322 23
Q ss_pred HHHHhHHHhhhcCCCHHHHHHHHHhhcccc
Q 001403 75 EIRKQNFFEALDGHDIAKALNILKKDLKDF 104 (1084)
Q Consensus 75 ~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~ 104 (1084)
.+| ..|++.....+..+.+..++.-+.-|
T Consensus 113 ~ly-~~~~~~~~~~~~~~~~~~l~~ll~~L 141 (229)
T 3iug_A 113 QLY-EKFSDAVSAATDEERLIKIHDVIQQL 141 (229)
T ss_dssp TTH-HHHHHHHTSSSHHHHHHHHHHHHTTS
T ss_pred HHH-HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 333 34566666666666666666655544
No 426
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=24.62 E-value=57 Score=25.30 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHhhhhcCh-HHHHHHHHHhcCCChh
Q 001403 3 KLNKDLVFLILQFLNEEGF-TESAHMLERESRFYFD 37 (1084)
Q Consensus 3 ~~~~~~~rli~q~L~~~g~-~~s~~~l~~Es~~~~~ 37 (1084)
.-...|...|+..|.+.|| ..+...+.++.|++.+
T Consensus 28 ~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~ 63 (76)
T 2k9l_A 28 GKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVE 63 (76)
T ss_dssp TTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHH
Confidence 4456789999999999997 4566666666676654
No 427
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=24.48 E-value=3.7e+02 Score=26.03 Aligned_cols=16 Identities=19% Similarity=0.246 Sum_probs=8.7
Q ss_pred hcCcCHHHHHHHhccc
Q 001403 45 ILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 45 i~~g~w~~~~~~l~~~ 60 (1084)
...|+|++|+..+.+.
T Consensus 119 ~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 119 YNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHTTCHHHHHHHHGGG
T ss_pred HHccCHHHHHHHHHHH
Confidence 3455555555555553
No 428
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=24.44 E-value=2.6e+02 Score=25.29 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=22.7
Q ss_pred HHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhccc
Q 001403 12 ILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 12 i~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
+...+...| |.+|.+.+++=-.+..+ ...=.-....|+|++|+..+...
T Consensus 11 lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~ 65 (184)
T 3vtx_A 11 IGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKF 65 (184)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444444 66666555553332221 11112234456666666665553
No 429
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=24.26 E-value=1e+02 Score=27.77 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=13.8
Q ss_pred HHhhhcCCCHHHHHHHHHh
Q 001403 81 FFEALDGHDIAKALNILKK 99 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~ 99 (1084)
.-|++..++..+|.+++++
T Consensus 16 L~EY~~~~D~~EA~~cl~E 34 (152)
T 2ion_A 16 LKEYLLSGDISEAEHCLKE 34 (152)
T ss_dssp HHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 4466667778888888876
No 430
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.06 E-value=49 Score=26.14 Aligned_cols=30 Identities=20% Similarity=0.255 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhcCCChh
Q 001403 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD 37 (1084)
Q Consensus 6 ~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~ 37 (1084)
.++.+-||++|++.| .++..|.+|-|++-.
T Consensus 16 ~~~~~~IL~lL~~~g--~sa~eLAk~LgiSk~ 45 (82)
T 1oyi_A 16 AEIVCEAIKTIGIEG--ATAAQLTRQLNMEKR 45 (82)
T ss_dssp HHHHHHHHHHHSSST--EEHHHHHHHSSSCHH
T ss_pred HHHHHHHHHHHHHcC--CCHHHHHHHHCcCHH
Confidence 357788899999999 888999999999875
No 431
>4gof_A Small glutamine-rich tetratricopeptide repeat-CON protein alpha; four-helix bundle, protein-protein interaction, UBL4A ubiqui domain; 1.35A {Homo sapiens} PDB: 4goe_A 4god_A
Probab=23.56 E-value=38 Score=23.96 Aligned_cols=16 Identities=38% Similarity=0.845 Sum_probs=12.9
Q ss_pred hhHHHHHHHHHhhhhc
Q 001403 4 LNKDLVFLILQFLNEE 19 (1084)
Q Consensus 4 ~~~~~~rli~q~L~~~ 19 (1084)
++++++..|+|||+..
T Consensus 1 ~~K~la~sIi~FL~~~ 16 (52)
T 4gof_A 1 MKKRLAYAIIQFLHDQ 16 (52)
T ss_dssp CCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHh
Confidence 3678999999999764
No 432
>2ibo_A Hypothetical protein SP2199; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.80A {Streptococcus pneumoniae TIGR4} SCOP: d.58.48.1
Probab=23.20 E-value=8.2 Score=32.32 Aligned_cols=35 Identities=11% Similarity=0.219 Sum_probs=27.5
Q ss_pred HHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccc
Q 001403 25 AHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 25 ~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
+..+-+|||+++++..+-+.|. |+||++.+.++++
T Consensus 25 ~i~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 59 (104)
T 2ibo_A 25 VIAYLQTQEVTMVVTPFETVLE-GEFDELMRILKEA 59 (104)
T ss_dssp HHHHHHHSSSEEEECSSCEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 3444458999998877777775 9999999998765
No 433
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=23.13 E-value=87 Score=22.38 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=12.2
Q ss_pred HHhhhhcChH--HH-HHHHHH
Q 001403 13 LQFLNEEGFT--ES-AHMLER 30 (1084)
Q Consensus 13 ~q~L~~~g~~--~s-~~~l~~ 30 (1084)
++-|.+|||. ++ .++|..
T Consensus 13 l~~L~~MGF~d~~~n~~AL~~ 33 (54)
T 2dah_A 13 LEQLRSMGFLNREANLQALIA 33 (54)
T ss_dssp HHHHHHHTCCCHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHH
Confidence 5889999993 22 566664
No 434
>2ovj_A Mgcracgap, RAC GTPase-activating protein 1; signaling protein, structural genomics, structural genomics consortium, SGC; HET: 7PE; 1.49A {Homo sapiens}
Probab=23.07 E-value=58 Score=31.15 Aligned_cols=90 Identities=18% Similarity=0.271 Sum_probs=46.4
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCChhHHHHHHHhcCcC----H------HHHHHHhcc-cccccCccccchhhhHH
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK----W------EDVEQYLSS-FTKVDDNRYSTKIYFEI 76 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~~~~~~~~~i~~g~----w------~~~~~~l~~-~~~~~~~~~~~~~~~~l 76 (1084)
+|.-++++|++.|++. +=+-+-+|-.-+++.+++.+..|. + ..+-.+|+. +..+++.- +-+.+
T Consensus 20 iv~~~i~~l~~~gl~~--eGIfR~sG~~~~i~~L~~~~~~~~~~~~~~~~~d~h~va~lLK~flreLpePL----i~~~l 93 (201)
T 2ovj_A 20 IVVHCVNEIEQRGLTE--TGLYRISGCDRTVKELKEKFLRVKTVPLLSKVDDIHAICSLLKDFLRNLKEPL----LTFRL 93 (201)
T ss_dssp HHHHHHHHHHHHTTTS--TTTTTSCCCHHHHHHHHHHHHTTCSCCCGGGCCCHHHHHHHHHHHHHTSSSCT----TCTTT
T ss_pred HHHHHHHHHHHhCCCc--CceeeeCCcHHHHHHHHHHHHcCCCCccccccCCHHHHHHHHHHHHHhCCCCC----CCHHH
Confidence 5667778888888631 112223333344888888887773 1 112222222 12233332 22344
Q ss_pred HHhHHHhhhcCCCHHHHHHHHHhhcccc
Q 001403 77 RKQNFFEALDGHDIAKALNILKKDLKDF 104 (1084)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~ 104 (1084)
|+ .|++.....+..+.+..++.-+.-|
T Consensus 94 ~~-~~~~~~~~~~~~~~~~~l~~ll~~L 120 (201)
T 2ovj_A 94 NR-AFMEAAEITDEDNSIAAMYQAVGEL 120 (201)
T ss_dssp HH-HHHHHHHCSSHHHHHHHHHHHHHTS
T ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHHC
Confidence 43 4667666666555566666544434
No 435
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=22.86 E-value=2.4e+02 Score=26.74 Aligned_cols=111 Identities=15% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCchhHHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcC-----------cCHHHHHHHhcccccc
Q 001403 1 MSKLNKDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILD-----------GKWEDVEQYLSSFTKV 63 (1084)
Q Consensus 1 ~~~~~~~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~-----------g~w~~~~~~l~~~~~~ 63 (1084)
+.+...+....+...+...| |.++...+++=..+..+ ...=.-.... |++++|+..+.+...+
T Consensus 34 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 34 ENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp TSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Q ss_pred cCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 64 DDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 64 ~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
.... ...+...=.=+...|+.++|+..+++-+.-- .+++.+..|..++
T Consensus 114 ~P~~------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~ 161 (217)
T 2pl2_A 114 NPRY------APLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELY 161 (217)
T ss_dssp CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred Cccc------HHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHH
No 436
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=22.86 E-value=2.9e+02 Score=24.54 Aligned_cols=105 Identities=12% Similarity=-0.019 Sum_probs=50.0
Q ss_pred HHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHH
Q 001403 8 LVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1084)
Q Consensus 8 ~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1084)
....+...+...| |.++...+++--....+ ...-.-....|++++|+.++.+........ ..+. ...-
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~----~~~a 83 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDN--VKVA----TVLG 83 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHHH----HHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC--HHHH----HHHH
Confidence 3333344444444 66666666554333221 223334456788888888877652221111 1111 1111
Q ss_pred HhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
.-+...++.++|+..+++-+.-. ..+...+..++.++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHH
Confidence 22344577778887777643322 22344444444433
No 437
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.78 E-value=1.2e+02 Score=26.40 Aligned_cols=19 Identities=37% Similarity=0.321 Sum_probs=13.5
Q ss_pred HHhhhcCCCHHHHHHHHHh
Q 001403 81 FFEALDGHDIAKALNILKK 99 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~ 99 (1084)
.-||+..++..+|.+++++
T Consensus 14 l~EY~~~~D~~Ea~~cl~e 32 (129)
T 2nsz_A 14 LKEYLLSGDISEAEHCLKE 32 (129)
T ss_dssp HHHHHHHCCHHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHH
Confidence 4466667777778777776
No 438
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=22.65 E-value=1.3e+02 Score=25.74 Aligned_cols=72 Identities=10% Similarity=0.031 Sum_probs=45.4
Q ss_pred HHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001403 43 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1084)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1084)
.....|+|++|++.+.+.-..+... ..++-..-.=++..|+..+|+..+++-+. +...+.+-+..|..++..
T Consensus 22 ~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 22 EYFKKGDYPTAMRHYNEAVKRDPEN------AILYSNRAACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHhhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHH
Confidence 3567899999999988752222111 11222333344568999999999998654 233455666677766553
No 439
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=22.62 E-value=5.2e+02 Score=30.33 Aligned_cols=110 Identities=11% Similarity=0.149 Sum_probs=66.6
Q ss_pred hHHHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHH
Q 001403 5 NKDLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRK 78 (1084)
Q Consensus 5 ~~~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~ 78 (1084)
..|....+...+.++| |.+|.+.+++=-.+..+ ...=.-....|++++|+..+.+.-.++.+. ..+ +-
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~--~~a----~~ 81 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTF--ADA----YS 81 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--HHH----HH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHH----HH
Confidence 3456667777888888 78887777764443322 111123446799999999988752222111 112 22
Q ss_pred hHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhcc
Q 001403 79 QNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121 (1084)
Q Consensus 79 q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~ 121 (1084)
..=.=+.+.|+.++|+..+++-+. +...+.+-+..|..++..
T Consensus 82 nLg~~l~~~g~~~~A~~~~~kAl~-l~P~~~~a~~~Lg~~~~~ 123 (723)
T 4gyw_A 82 NMGNTLKEMQDVQGALQCYTRAIQ-INPAFADAHSNLASIHKD 123 (723)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHH
Confidence 222234568999999999998543 223456677777777654
No 440
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=22.54 E-value=2.8e+02 Score=27.77 Aligned_cols=94 Identities=7% Similarity=-0.013 Sum_probs=54.9
Q ss_pred HHHHHHHHhhhhcChHHHHHHHHHhcCCCh---h----H----HHHHHHhcCcCHHHHHHHhccc-ccccCccccchhhh
Q 001403 7 DLVFLILQFLNEEGFTESAHMLERESRFYF---D----M----KFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYF 74 (1084)
Q Consensus 7 ~~~rli~q~L~~~g~~~s~~~l~~Es~~~~---~----~----~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~ 74 (1084)
++...+..++....|.++.+.+++.-.... + + ..-.-....|++++|+.++.+. .......... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY-QNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT-HHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH-HHH
Confidence 345666667777778888887765433211 1 0 0111235678999999987663 1111111111 223
Q ss_pred HHHHhHHHhhhcCCCHHHHHHHHHhhc
Q 001403 75 EIRKQNFFEALDGHDIAKALNILKKDL 101 (1084)
Q Consensus 75 ~l~~q~~~Ell~~~~~~~a~~~l~~~l 101 (1084)
.++-..-.-+...|++++|+..+++-+
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345555555677899999999998865
No 441
>1lxj_A YBL001C, hypothetical 11.5KDA protein in HTB2-NTH2 interge region; hypothetical protein, HTB2-NTH2 intergenic region; 1.80A {Saccharomyces cerevisiae} SCOP: d.58.48.1
Probab=22.45 E-value=8.4 Score=32.31 Aligned_cols=39 Identities=23% Similarity=0.305 Sum_probs=29.5
Q ss_pred hHHHHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccc
Q 001403 21 FTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 21 ~~~s~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
|-..+..+-+|||+++++..+-+.|. |+||++.+.++++
T Consensus 25 ~Va~~i~~i~~sGl~y~~~pm~T~IE-Ge~devm~vv~~~ 63 (104)
T 1lxj_A 25 FVALIEKKIRESPLKSTLHSAGTTIE-GPWDDVMGLIGEI 63 (104)
T ss_dssp HHHHHHHHHHTSSSEEEEETTEEEEE-EEHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEeCCCccEEE-cCHHHHHHHHHHH
Confidence 33445556668999998777777774 9999999998764
No 442
>1yqh_A DUF77, IG hypothetical 16092; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Bacillus cereus atcc 14579} SCOP: d.58.48.1
Probab=22.43 E-value=9.9 Score=32.12 Aligned_cols=36 Identities=11% Similarity=0.156 Sum_probs=27.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHhcCcCHHHHHHHhccc
Q 001403 24 SAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60 (1084)
Q Consensus 24 s~~~l~~Es~~~~~~~~~~~~i~~g~w~~~~~~l~~~ 60 (1084)
.+..+-+|||+++++..+-+.|. |+||++.+.++++
T Consensus 29 ~~i~vl~~sGl~y~~~pmgT~IE-Ge~devm~vv~~~ 64 (109)
T 1yqh_A 29 KAIEVVQQSGVRYEVGAMETTLE-GELDVLLDVVKRA 64 (109)
T ss_dssp HHHHHHHHSCSEEEECSSCEEEE-ECHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCeEecCCccEEE-cCHHHHHHHHHHH
Confidence 34444558999998777777774 9999999998764
No 443
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=21.38 E-value=1.2e+02 Score=20.80 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=13.8
Q ss_pred HHHHHhhhhcChH--HH-HHHHHH
Q 001403 10 FLILQFLNEEGFT--ES-AHMLER 30 (1084)
Q Consensus 10 rli~q~L~~~g~~--~s-~~~l~~ 30 (1084)
.--++-|.+|||. ++ .++|..
T Consensus 8 ~~~i~~L~~MGF~d~~~~~~AL~~ 31 (46)
T 2bwb_A 8 EHQLRQLNDMGFFDFDRNVAALRR 31 (46)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHH
Confidence 3456889999983 33 466654
No 444
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=21.15 E-value=2.3e+02 Score=27.30 Aligned_cols=93 Identities=9% Similarity=0.019 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHH
Q 001403 21 FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALN 95 (1084)
Q Consensus 21 ~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~ 95 (1084)
+.++.+.+++-.....+ ...-.-....|+|++|+..+.+........ . .++...-.-++..|+.++|+.
T Consensus 121 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~--~----~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED--A----RGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--H----HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc--H----HHHHHHHHHHHHhCCHHHHHH
Confidence 45555555543333222 222333456678888877777642221111 1 112222222345677777877
Q ss_pred HHHhhccccCCCCHHHHHHHHHHhc
Q 001403 96 ILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 96 ~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
.+++-+.- ...+.+.+..++.++.
T Consensus 195 ~~~~al~~-~~~~~~~~~~l~~~~~ 218 (258)
T 3uq3_A 195 DCNKAIEK-DPNFVRAYIRKATAQI 218 (258)
T ss_dssp HHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHh-CHHHHHHHHHHHHHHH
Confidence 77764432 2345555555555444
No 445
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=21.04 E-value=1.7e+02 Score=24.38 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=44.3
Q ss_pred HHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001403 42 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 42 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
......|+|++|+..+.+........ ..++...-.-++..++.++|+..+++-+.- ...+...+..++.++.
T Consensus 24 ~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAIKRNPKD------AKLYSNRAACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHHTTCTTC------HHHHHHHHHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHHHHHH
Confidence 44567999999999998752222111 112222223346789999999999985542 2335555666666554
No 446
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=20.97 E-value=1.4e+02 Score=25.09 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=42.6
Q ss_pred HHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHhc
Q 001403 42 EDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120 (1084)
Q Consensus 42 ~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~ 120 (1084)
...+..|+|++|+..+.+....+... ....+.+- .=+...|+.++|+..+++-+. +.+.+.+-+..|+.++.
T Consensus 25 ~~~~~~g~~~~A~~~~~~al~~~P~~--~~a~~~lg----~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 25 LSMLKLANLAEAALAFEAVCQKEPER--EEAWRSLG----LTQAENEKDGLAIIALNHARM-LDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTC--HHHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCC--HHHHHHHH----HHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHH
Confidence 45677899999999988752222221 11222221 123457999999999988443 22334555555655544
No 447
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=20.86 E-value=2.3e+02 Score=26.98 Aligned_cols=106 Identities=14% Similarity=0.119 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
++...+...+..+| |.++.+.+++=.....+ ...-.-....|+|++|+.++.+........ ..++...
T Consensus 92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l 165 (243)
T 2q7f_A 92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND------TEARFQF 165 (243)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC------HHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc------HHHHHHH
Q ss_pred HHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 81 FFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
-.-++..|+.++|+..+++ ...+...+.+.+..|+.+.
T Consensus 166 ~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 166 GMCLANEGMLDEALSQFAA-VTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHHHHHHTCCHHHHHHHHH-HHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH-HHHhCcccHHHHHHHHHHH
No 448
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.59 E-value=2e+02 Score=31.24 Aligned_cols=111 Identities=12% Similarity=0.096 Sum_probs=65.1
Q ss_pred HHHHhhhhcC-hHHHHHHHHH---hc---CCChh--HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHH
Q 001403 11 LILQFLNEEG-FTESAHMLER---ES---RFYFD--MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF 81 (1084)
Q Consensus 11 li~q~L~~~g-~~~s~~~l~~---Es---~~~~~--~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~ 81 (1084)
-..+|+.+.| |.++++.+++ ++ +-.++ +..+|-.+..|||..|..++.++............+-.+....=
T Consensus 136 ~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g 215 (429)
T 4b4t_R 136 NLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG 215 (429)
T ss_dssp HHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH
Confidence 3556777777 6666665543 22 22334 78899999999999999999887433222111112222333334
Q ss_pred HhhhcCCCHHHHHHHHHhhccccCCCCH------HHHHHHHHHhcc
Q 001403 82 FEALDGHDIAKALNILKKDLKDFAPGNE------ELFKELAQLLTL 121 (1084)
Q Consensus 82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~------~~~~~l~~ll~~ 121 (1084)
+-++..+++..|...+..-+.-+..... -.|--|+++++.
T Consensus 216 l~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~y~~l~al~~~ 261 (429)
T 4b4t_R 216 IHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIATYASVTGLFTL 261 (429)
T ss_dssp HGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHHHHHHHHHhcC
Confidence 4457789999998888764433322221 234455555554
No 449
>2ee4_A RHO GTPase activating protein 5 variant; all alpha protein, GTPase-activating protein for RHO family members, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2ee5_A
Probab=20.50 E-value=1.1e+02 Score=29.48 Aligned_cols=105 Identities=22% Similarity=0.279 Sum_probs=50.6
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCChhHHHHHHHhcCcC----------HHHHHHHhcc-cccccCccccchhhhHH
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK----------WEDVEQYLSS-FTKVDDNRYSTKIYFEI 76 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~~~~~~~~~i~~g~----------w~~~~~~l~~-~~~~~~~~~~~~~~~~l 76 (1084)
+|.-++++|++.|++. +=+-+-+|-.-+++.+++.+..|. -..+-.+|+. +..+++.-+ -+.+
T Consensus 30 iv~~~i~~l~~~gl~~--eGIfR~~g~~~~i~~l~~~~~~~~~~~~~~~~~d~~~va~lLK~flreLPePLi----~~~l 103 (209)
T 2ee4_A 30 FVEKCVEFIEDTGLCT--EGLYRVSGNKTDQDNIQKQFDQDHNINLVSMEVTVNAVAGALKAFFADLPDPLI----PYSL 103 (209)
T ss_dssp HHHHHHHHHHHTCSCC--TTTTTSCCCHHHHHHHHHHHHHCTTCCHHHHTCCHHHHHHHHHHHHHHSSSCSS----CTTT
T ss_pred HHHHHHHHHHHhCCCC--CCccccCCCHHHHHHHHHHHhcCCCCCcccCCCCHHHHHHHHHHHHHhCCCccC----CHHH
Confidence 5667788888888631 112222232333677777766553 1123333333 122333332 2333
Q ss_pred HHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 77 RKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 77 ~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
|+ .|++.....+..+.+..++.-+..|...+...++.|..+|
T Consensus 104 ~~-~~~~~~~~~~~~~~~~~l~~ll~~LP~~n~~~L~~L~~~L 145 (209)
T 2ee4_A 104 HP-ELLEAAKIPDKTERLHALKEIVKKFHPVNYDVFRYVITHL 145 (209)
T ss_dssp HH-HHHHHHSCSSHHHHHHHHHHHTTTSCTTHHHHHHHHHHHH
T ss_pred HH-HHHHHHhCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
Confidence 43 4666665555555666666655555433333333333333
No 450
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=20.36 E-value=3.2e+02 Score=25.54 Aligned_cols=107 Identities=7% Similarity=0.021 Sum_probs=62.4
Q ss_pred HHHHHHHHHhhhhcChHHHHHHHHHhcCCChh-H----H----------------HHHHHhcCcCHHHHHHHhccccccc
Q 001403 6 KDLVFLILQFLNEEGFTESAHMLERESRFYFD-M----K----------------FFEDMILDGKWEDVEQYLSSFTKVD 64 (1084)
Q Consensus 6 ~~~~rli~q~L~~~g~~~s~~~l~~Es~~~~~-~----~----------------~~~~~i~~g~w~~~~~~l~~~~~~~ 64 (1084)
.+++..-..++..--|.++...+++=.....+ . . .=.-....|++++|+..+.+.-..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34556666666666688888887765544332 1 1 2233567899999999988752222
Q ss_pred CccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 65 DNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 65 ~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
... ..+.+.+ =.-++..|+.++|+..+++-+. +.+.+.+-+..|..++
T Consensus 85 p~~--~~~~~~l----g~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 85 PNN--VDCLEAC----AEMQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYY 132 (208)
T ss_dssp TTC--HHHHHHH----HHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred CCC--HHHHHHH----HHHHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 221 1122222 1223456899999999998544 2234555555555443
No 451
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=20.31 E-value=1.5e+02 Score=26.14 Aligned_cols=89 Identities=8% Similarity=-0.064 Sum_probs=0.0
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHHhcCCChh-----HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhH
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLERESRFYFD-----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQN 80 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~Es~~~~~-----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~ 80 (1084)
++...+...+..+| |.++...+++=..+..+ ...-.-....|++++|+..+.+........ .........
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~ 123 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD----KDAKMKYQE 123 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q ss_pred HHhhhcCCCHHHHHHHHHh
Q 001403 81 FFEALDGHDIAKALNILKK 99 (1084)
Q Consensus 81 ~~Ell~~~~~~~a~~~l~~ 99 (1084)
...++..++..+|+..+.+
T Consensus 124 ~~~~~~~~~~~~A~~~~~~ 142 (166)
T 1a17_A 124 CNKIVKQKAFERAIAGDEH 142 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccc
No 452
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.31 E-value=3.9e+02 Score=22.51 Aligned_cols=82 Identities=7% Similarity=-0.019 Sum_probs=37.3
Q ss_pred HhhhhcChHHHHHHHHHhcCCChh--------HHHHHHHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhh
Q 001403 14 QFLNEEGFTESAHMLERESRFYFD--------MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEAL 85 (1084)
Q Consensus 14 q~L~~~g~~~s~~~l~~Es~~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell 85 (1084)
.++...-|.++.+.+++-.....+ ...=......|+|++|+..+.+........ ..+.+.+ -.-+.
T Consensus 37 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~----a~~~~ 110 (148)
T 2dba_A 37 ELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGD--VKALYRR----SQALE 110 (148)
T ss_dssp HHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCC--HHHHHHH----HHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccC--HHHHHHH----HHHHH
Confidence 333333466666666654433221 112223455677777777766542221111 1111111 11123
Q ss_pred cCCCHHHHHHHHHhhc
Q 001403 86 DGHDIAKALNILKKDL 101 (1084)
Q Consensus 86 ~~~~~~~a~~~l~~~l 101 (1084)
..++.++|+..+++-+
T Consensus 111 ~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 111 KLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 3566777777776643
No 453
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.24 E-value=1.8e+02 Score=31.86 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=56.7
Q ss_pred HHHHHHHHhhhhcC-hHHHHHHHHH---hcCCChh--------HHHHHHHhcCcCHHHHHHHhccccc--ccCccccchh
Q 001403 7 DLVFLILQFLNEEG-FTESAHMLER---ESRFYFD--------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTKI 72 (1084)
Q Consensus 7 ~~~rli~q~L~~~g-~~~s~~~l~~---Es~~~~~--------~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~~ 72 (1084)
-+.+.+.....+.| |.+++..|++ |+.-..+ +..+|-++..+||..|..++.++.. ..... ...+
T Consensus 138 rl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~-~~~l 216 (445)
T 4b4t_P 138 RVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK-YESL 216 (445)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC-CHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC-cHHH
Confidence 34445555555556 9999876655 7754432 6888999999999999999887521 11111 1112
Q ss_pred hhHHHHhHHHhhhcCCCHHHHHHHHHhhc
Q 001403 73 YFEIRKQNFFEALDGHDIAKALNILKKDL 101 (1084)
Q Consensus 73 ~~~l~~q~~~Ell~~~~~~~a~~~l~~~l 101 (1084)
...++.+.-.=+...+++.+|...+.+-+
T Consensus 217 k~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 217 KLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 22222222222356688888877777643
No 454
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=20.13 E-value=1.8e+02 Score=22.13 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=38.0
Q ss_pred HHhcCcCHHHHHHHhcccccccCccccchhhhHHHHhHHHhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 001403 43 DMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQL 118 (1084)
Q Consensus 43 ~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~l~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~l 118 (1084)
.....|+|++|+..+.+.-...... ....+. .-.-+...++.++|+..+++-+.- .+.+.+.+..|..+
T Consensus 18 ~~~~~~~~~~A~~~~~~a~~~~~~~--~~~~~~----l~~~~~~~~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~ 86 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKALELDPNN--AEAWYN----LGNAYYKQGDYDEAIEYYQKALEL-DPNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTC--HHHHHH----HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHhcCCCC--HHHHHH----HHHHHHHHhhHHHHHHHHHHHHhc-CCCCHHHHHHHHHH
Confidence 3456799999999887752222111 112221 122234578999999999875432 22344444444443
No 455
>3byi_A RHO GTPase activating protein 15; BM046, arhgap15, structural genomics consortium, signaling protein; 2.25A {Homo sapiens}
Probab=20.07 E-value=77 Score=30.63 Aligned_cols=90 Identities=14% Similarity=0.239 Sum_probs=45.2
Q ss_pred HHHHHHHhhhhcChHHHHHHHHHhcCCChhHHHHHHHhcCcC--------H---HHHHHHhcc-cccccCccccchhhhH
Q 001403 8 LVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGK--------W---EDVEQYLSS-FTKVDDNRYSTKIYFE 75 (1084)
Q Consensus 8 ~~rli~q~L~~~g~~~s~~~l~~Es~~~~~~~~~~~~i~~g~--------w---~~~~~~l~~-~~~~~~~~~~~~~~~~ 75 (1084)
+|.-++++|++.|++. +=+-+-+|-.-+++.+++.+..|. | ..+-.+|+. +..+++.- +-+.
T Consensus 38 ~v~~~i~~l~~~gl~~--eGIfR~~G~~~~i~~L~~~~~~~~~~~~~~~~~~dvh~va~lLK~flreLPePL----l~~~ 111 (214)
T 3byi_A 38 FVKQCIEAVEKRGLDV--DGIYRVSGNLATIQKLRFIVNQEEKLNLDDSQWEDIHVVTGALKMFFRELPEPL----FPYS 111 (214)
T ss_dssp HHHHHHHHHHHHTTTS--TTTTTSCCCHHHHHHHHHHHHTTCCCCTTSGGGCSHHHHHHHHHHHHHHSSSCS----SCHH
T ss_pred HHHHHHHHHHHhCCCC--CCccccCCCHHHHHHHHHHHhcCCCCCCCcccccchHHHHHHHHHHHHhCCCCC----CCHH
Confidence 5666677887777531 111222232334788888876663 2 123333332 12233332 3344
Q ss_pred HHHhHHHhhhcCCCHHHHHHHHHhhcccc
Q 001403 76 IRKQNFFEALDGHDIAKALNILKKDLKDF 104 (1084)
Q Consensus 76 l~~q~~~Ell~~~~~~~a~~~l~~~l~~~ 104 (1084)
+|+ .|++.....+..+.+..++.-+.-|
T Consensus 112 l~~-~~~~~~~~~~~~~~~~~l~~ll~~L 139 (214)
T 3byi_A 112 FFE-QFVEAIKKQDNNTRIEAVKSLVQKL 139 (214)
T ss_dssp HHH-HHHHHHTSSSHHHHHHHHHHHHHHS
T ss_pred HHH-HHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 554 4677766666655555555544434
No 456
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=20.02 E-value=4.3e+02 Score=26.44 Aligned_cols=34 Identities=12% Similarity=0.055 Sum_probs=17.1
Q ss_pred hcCCCHHHHHHHHHhhccccCCCCHHHHHHHHHHh
Q 001403 85 LDGHDIAKALNILKKDLKDFAPGNEELFKELAQLL 119 (1084)
Q Consensus 85 l~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll 119 (1084)
+..|+.++|+..+++-+.-. ..+...+..++.++
T Consensus 170 ~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 203 (330)
T 3hym_B 170 GLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVA 203 (330)
T ss_dssp HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44666777777776643322 22334444444443
Done!