Query 001404
Match_columns 1084
No_of_seqs 211 out of 336
Neff 5.5
Searched_HMMs 46136
Date Thu Mar 28 23:58:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001404.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001404hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2347 Sec5 subunit of exocys 100.0 2E-129 5E-134 1141.2 56.1 902 30-1024 2-934 (934)
2 PF15469 Sec5: Exocyst complex 100.0 3.1E-38 6.8E-43 328.5 19.3 179 239-417 1-182 (182)
3 KOG2346 Uncharacterized conser 100.0 1.3E-30 2.8E-35 293.0 40.5 205 198-407 25-230 (636)
4 PF04124 Dor1: Dor1-like famil 99.5 1.7E-12 3.6E-17 148.3 21.7 205 217-427 5-212 (338)
5 KOG2069 Golgi transport comple 99.1 7.1E-09 1.5E-13 121.9 20.7 213 203-428 18-237 (581)
6 PF08700 Vps51: Vps51/Vps67; 98.8 8.2E-09 1.8E-13 95.3 7.5 70 201-270 1-70 (87)
7 KOG2033 Low density lipoprotei 98.7 0.002 4.3E-08 77.9 47.0 198 215-427 13-230 (863)
8 PF10475 DUF2450: Protein of u 98.2 0.00021 4.5E-09 80.7 22.2 197 203-404 10-211 (291)
9 KOG2176 Exocyst complex, subun 98.0 0.12 2.6E-06 64.4 43.2 121 223-348 45-165 (800)
10 PF04100 Vps53_N: Vps53-like, 97.8 0.0035 7.5E-08 73.6 24.0 166 204-383 2-181 (383)
11 PF06248 Zw10: Centromere/kine 97.6 0.36 7.8E-06 60.0 38.5 161 218-385 6-179 (593)
12 PF04091 Sec15: Exocyst comple 97.2 0.0016 3.4E-08 74.4 10.5 139 822-971 144-288 (311)
13 KOG2307 Low density lipoprotei 97.2 0.94 2E-05 54.7 40.6 194 200-405 27-235 (705)
14 PF10392 COG5: Golgi transport 97.2 0.0032 6.9E-08 63.3 10.8 113 202-326 4-128 (132)
15 PF06148 COG2: COG (conserved 96.4 0.0042 9.1E-08 62.3 4.7 68 200-270 7-74 (133)
16 PF04048 Sec8_exocyst: Sec8 ex 95.8 0.095 2.1E-06 53.4 11.4 125 202-332 17-141 (142)
17 KOG3691 Exocyst complex subuni 95.5 0.24 5.3E-06 62.1 15.5 148 218-370 42-191 (982)
18 PF10191 COG7: Golgi complex c 95.4 13 0.00028 48.0 53.2 218 201-427 5-237 (766)
19 KOG2180 Late Golgi protein sor 95.1 3.9 8.5E-05 51.0 23.3 174 201-386 14-199 (793)
20 PF04437 RINT1_TIP1: RINT-1 / 93.6 0.85 1.8E-05 55.5 13.9 134 816-957 303-442 (494)
21 PF06046 Sec6: Exocyst complex 90.8 17 0.00037 44.9 20.6 83 853-942 392-476 (566)
22 PF04129 Vps52: Vps52 / Sac2 f 68.7 2.1E+02 0.0046 35.4 18.1 155 282-452 47-216 (508)
23 KOG4424 Predicted Rho/Rac guan 68.5 59 0.0013 40.3 12.8 142 281-443 109-253 (623)
24 PF10474 DUF2451: Protein of u 67.9 55 0.0012 36.4 11.7 88 851-943 78-171 (234)
25 PF14923 CCDC142: Coiled-coil 63.8 1.3E+02 0.0028 36.7 14.3 92 849-948 257-359 (450)
26 KOG2115 Vacuolar sorting prote 54.8 6.4E+02 0.014 33.4 28.2 125 251-380 268-395 (951)
27 KOG0553 TPR repeat-containing 51.5 99 0.0022 35.7 10.1 89 302-406 76-181 (304)
28 KOG1945 Protein phosphatase 1 48.3 1.6E+02 0.0035 34.7 11.2 23 147-169 209-231 (377)
29 KOG4648 Uncharacterized conser 47.9 1.8E+02 0.0039 34.4 11.4 43 331-373 105-159 (536)
30 cd07657 F-BAR_Fes_Fer The F-BA 45.2 3.3E+02 0.0071 30.4 12.9 50 220-269 66-115 (237)
31 PF06008 Laminin_I: Laminin Do 44.1 5.1E+02 0.011 29.1 15.2 89 286-379 54-143 (264)
32 cd07651 F-BAR_PombeCdc15_like 42.8 5E+02 0.011 28.6 15.0 39 220-258 61-99 (236)
33 KOG2347 Sec5 subunit of exocys 41.7 75 0.0016 41.2 7.9 179 192-392 76-274 (934)
34 PF12022 DUF3510: Domain of un 41.4 86 0.0019 31.5 7.0 57 852-908 22-79 (125)
35 PF11547 E3_UbLigase_EDD: E3 u 40.4 37 0.0008 28.8 3.4 30 996-1025 7-40 (53)
36 PF04124 Dor1: Dor1-like famil 36.1 7.6E+02 0.016 28.8 15.7 71 313-383 156-237 (338)
37 COG2904 Uncharacterized protei 35.8 30 0.00065 34.8 2.6 73 149-226 28-112 (137)
38 KOG1925 Rac1 GTPase effector F 35.5 5.3E+02 0.011 31.9 13.0 68 365-432 517-596 (817)
39 KOG4603 TBP-1 interacting prot 34.5 3E+02 0.0064 29.5 9.6 85 227-349 80-164 (201)
40 PF09726 Macoilin: Transmembra 33.1 1.8E+02 0.0039 37.5 9.6 107 221-334 547-656 (697)
41 cd07686 F-BAR_Fer The F-BAR (F 32.8 7.5E+02 0.016 27.8 14.6 51 219-269 65-115 (234)
42 PF10516 SHNi-TPR: SHNi-TPR; 31.6 37 0.00079 27.4 2.1 21 333-353 11-31 (38)
43 KOG0972 Huntingtin interacting 31.1 5E+02 0.011 30.1 11.3 83 200-292 238-320 (384)
44 cd07653 F-BAR_CIP4-like The F- 29.8 7.9E+02 0.017 27.1 13.3 42 219-260 65-106 (251)
45 KOG2398 Predicted proline-seri 29.5 1.1E+03 0.023 30.4 15.1 48 221-268 49-96 (611)
46 PF06419 COG6: Conserved oligo 26.8 8.6E+02 0.019 31.0 14.0 163 789-973 336-511 (618)
47 KOG1924 RhoA GTPase effector D 26.5 49 0.0011 42.3 2.9 9 219-227 713-721 (1102)
48 KOG3771 Amphiphysin [Intracell 26.3 7.2E+02 0.016 30.6 12.3 32 496-527 171-202 (460)
49 PF03670 UPF0184: Uncharacteri 25.7 72 0.0016 30.2 3.2 44 204-250 21-64 (83)
50 PF04212 MIT: MIT (microtubule 24.9 1.4E+02 0.0031 26.3 4.9 18 336-353 18-35 (69)
51 KOG4514 Uncharacterized conser 24.3 4.7E+02 0.01 28.3 9.1 24 220-243 140-163 (222)
52 KOG0780 Signal recognition par 23.1 1.8E+02 0.0038 35.1 6.3 59 202-270 281-339 (483)
53 cd02683 MIT_1 MIT: domain cont 22.2 1.9E+02 0.0042 26.7 5.3 48 335-382 18-73 (77)
54 PF02809 UIM: Ubiquitin intera 22.0 67 0.0014 21.9 1.7 12 5-16 1-12 (18)
55 PF05837 CENP-H: Centromere pr 21.9 71 0.0015 31.2 2.6 40 818-859 58-97 (106)
56 PRK04778 septation ring format 21.8 1.1E+03 0.025 29.5 13.7 82 296-379 409-492 (569)
57 PF10158 LOH1CR12: Tumour supp 21.8 5.2E+02 0.011 26.5 8.7 67 204-270 22-99 (131)
58 PF04100 Vps53_N: Vps53-like, 21.5 1.1E+03 0.023 28.3 12.8 21 308-328 138-158 (383)
59 smart00726 UIM Ubiquitin-inter 21.3 68 0.0015 23.9 1.7 12 6-17 1-12 (26)
60 KOG2568 Predicted membrane pro 20.8 68 0.0015 39.6 2.6 64 47-110 447-516 (518)
61 cd07649 F-BAR_GAS7 The F-BAR ( 20.6 1.2E+03 0.026 26.0 12.4 47 337-383 168-214 (233)
62 cd07648 F-BAR_FCHO The F-BAR ( 20.5 1.1E+03 0.024 26.2 12.1 46 337-382 164-209 (261)
63 PF13870 DUF4201: Domain of un 20.4 1E+03 0.022 25.0 11.5 108 218-334 41-148 (177)
64 KOG1924 RhoA GTPase effector D 20.4 83 0.0018 40.4 3.2 11 106-116 644-654 (1102)
65 cd07674 F-BAR_FCHO1 The F-BAR 20.3 1.2E+03 0.027 26.1 16.3 45 338-382 165-209 (261)
66 PF00515 TPR_1: Tetratricopept 20.3 83 0.0018 23.2 2.2 21 333-353 11-31 (34)
No 1
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.3e-129 Score=1141.19 Aligned_cols=902 Identities=44% Similarity=0.629 Sum_probs=749.4
Q ss_pred CCCCCcccccCCCCCcccC-------CCCCCCCCCcccccccceeeecccCCccccchh---------hhhhh-cccCCc
Q 001404 30 PRKPVTNYVQQPKSAATQK-------GGRSQGKKYEEEEESEVEMLSISSGDEEVSRDR---------GLAAK-NRARGR 92 (1084)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~-~~~~~~ 92 (1084)
.++||.+++|||++....+ +..-+++.+. +|+|+|++|+|+++||+.++.+ +++++ .+|+++
T Consensus 2 ~~np~~~~~q~p~vtg~s~~e~~p~t~~~ir~e~l~-~~~sd~~~l~i~g~D~lls~~~~s~~~~~~~~g~a~~~~G~~r 80 (934)
T KOG2347|consen 2 TRNPVARLAQQPRVTGLSPNEGGPGTAVTIRKEFLG-NDESDVIGLSICGGDELLSAERKSPNGIIARVGLAKREKGDIR 80 (934)
T ss_pred CCCchhhccCCccccCCCCCCCCCCcceeecCCccC-cchhhHhhhhhcccchhhhhhcCCCCccccccccccCCCCceE
Confidence 4789999999998873222 2244556677 9999999999999999877664 23233 278888
Q ss_pred cCCCCCCCCCCCCccccccHHHHHHHHHHhhhccCcccccccccccchhhcc-cccccccccCCCCCCCCCCCCCc-cch
Q 001404 93 RDDDGTWDGDEPNCWKRVDEAELARRVREMRETRTAPVAQKYEKKPSMAAGI-KGFSTLQSFPRGMECIDPLGLGI-IDN 170 (1084)
Q Consensus 93 ~~~~~~~~~~~p~~w~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~DPLGl~~-~~~ 170 (1084)
..++..|+|-.|.+|.+|..+++. +++|+..+.+| ++++.++. ...+ ++...+|..|+++...+|+-..+ ++.
T Consensus 81 ~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~--~~~~~~~~-~~~~~~~~t~l~~~~~l~~~i~~~k~~~~~d~ 155 (934)
T KOG2347|consen 81 VTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE--QQDQRKVP-GRLKGVALTSLQSEPPLGECIEPLKLKINEDN 155 (934)
T ss_pred EeeccCccccCchhhhhhhHhhhc--cchhhhhhccc--cccccccc-ccccccCCcccccCCCcccccCchhhcchhhh
Confidence 899999999999999999999998 99999999888 66666544 3322 37777777777777777776544 333
Q ss_pred hhhhhhcccCCCCCCCCCCCCCchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 001404 171 KTLRLITDSSGSTPKSDRDNVDNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (1084)
Q Consensus 171 ~~L~~~~~~~~~~P~~~~~~~~p~lr~~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF 250 (1084)
+ .++|.. .+||.+++|+|+|||.++|+++||+||+.|...|++..+..++.-+.||++||
T Consensus 156 ~------------------~lfp~~--~~Dl~se~Fspkw~L~enH~~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~ 215 (934)
T KOG2347|consen 156 K------------------TLFPIT--SVDLRSEHFSPKWFLLENHQDTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNF 215 (934)
T ss_pred h------------------hhcccc--ccccccccCChhHHHHhhhhhccHHHHHHHHHHHHHhhcchhhhhHHHHhcch
Confidence 3 344544 57899999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 001404 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (1084)
Q Consensus 251 ~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L 330 (1084)
+.||.|++|+++|+.++++.+.+..+++|.+|.+.|+++.+.|+.+|.+|++|++|||++|+++++|+||+|||+||+++
T Consensus 216 ~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~s~ad~iF~~vl~Rk~~ADstRsvL~~lqRfkfLFnLp~~i 295 (934)
T KOG2347|consen 216 DSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNSTSRADLIFEDVLERKDKADSTRSVLGVLQRFKFLFNLPSNI 295 (934)
T ss_pred hHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcchhh
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCChH
Q 001404 331 RGSISKGEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDPV 410 (1084)
Q Consensus 331 ~~~I~~gdYd~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~lI~lLleL~~~~dPi 410 (1084)
+++|++|+|+.+|++|+|||+++.+++|++|+++++|||..|+.||..|+++|.+++.+.++++++|++|.+|++++||+
T Consensus 296 er~i~kGeYd~vvndYekAKsl~~~t~v~~Fkk~l~Eve~~m~~~k~~l~~kli~~p~t~~dq~~~ir~L~~L~~~~dP~ 375 (934)
T KOG2347|consen 296 ERSIKKGEYDTVVNDYEKAKSLFGKTEVNLFKKVLEEVEKRMQSFKETLYRKLIDTPITFEDQSKLIRYLSELEPESDPV 375 (934)
T ss_pred hhHhhcCCceeeccchhhHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhCcccCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhhHHHHHHHhhhccCcCcccccccCCCCCCCCCCCCCChhhH
Q 001404 411 WHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADYSVTCGNIQPIDSLPVELSGEEV 490 (1084)
Q Consensus 411 w~fL~sq~~~I~~~le~~~~~~~~~~e~l~~rl~~~~~s~~~~~~lq~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ev 490 (1084)
|+||..|++||...++.|...|+++++.++ + ++ +|.+.+++....+.-++.+..+.-+ . ....++.+.
T Consensus 376 wq~I~~q~k~i~~L~~s~~~~~~~~l~~~~--~-----~~-~~~q~s~~g~~~S~t~s~~~~~~~q---~-~~~~~~~~k 443 (934)
T KOG2347|consen 376 WQCIGVQNKRILGLLESCWDDHVARLEGLR--L-----SD-KWTQPSQNGVHLSDTASSMENSQNQ---V-INEWKIREK 443 (934)
T ss_pred hhhccccchHHHhhhhhcchhHHHHhhccc--c-----cc-cccchhhcccccCchHHHHhhhhhh---h-ccchhhhhh
Confidence 999999999999999999999999999886 1 33 6665555543211111122222111 0 112344455
Q ss_pred HHHHHHHHHHHHHHHHhcchhHHHHHHHhhcC-cccccccCCccccccccCchhhhh--hccCccccccHHHHHHHHHHH
Q 001404 491 DAFRGRYIRRLTAVLIHHIPAFWKVALSVFSG-KFAKSSQVSSESNLNASGNKAEEK--VGEGKYSIHSLDEVAGMIRNT 567 (1084)
Q Consensus 491 ~~l~~~fv~~L~~vll~~lp~FWklaqs~~~G-k~~k~~~~~~~~~s~ss~~~~~~~--l~~~k~~~h~~~e~~~mi~e~ 567 (1084)
...+++||++||+++++++|.|||+|++|++| +|....+.. .+..++.+.. +....+..|++.++..|.+-.
T Consensus 444 ~~~r~~fiekL~~l~~s~lP~fWKl~~sy~~G~~~~~~sq~~-----~s~~~k~~qn~~~~~~~~v~~sLv~~~~~~~~t 518 (934)
T KOG2347|consen 444 TPERVNFIEKLTDLLLSQLPIFWKLAISYFNGDLFSPSSQVQ-----DSDINKMEQNNEVREKREVFHSLVELALMDRFT 518 (934)
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHhcccccCcccccC-----hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 56788999999999999999999999999999 555444333 1222222212 122346678888888888888
Q ss_pred HHHhhhhhhhcccCCccCccchHHHHHHHHHHHHHHHhhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 001404 568 ISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYIGRLCSWMQGSTDGIS 647 (1084)
Q Consensus 568 i~~y~~~v~~~F~~l~~~n~~~~yL~~~l~~v~~~~~~L~~~~~~P~~~~~~Lr~L~~~~~~~~v~~lca~~~~dae~i~ 647 (1084)
++.|..+...-|-+.|......|||+++++.|+.+|++|+.++.+|+++++-|+.|+.+ .+++|+|+|++..+|.|+
T Consensus 519 ~s~~~~~a~~~~~~~dis~~~~~~~~~~i~~vr~~~~sL~ale~~P~~~lq~Iq~li~~---~rl~~~~~~~~~~~e~is 595 (934)
T KOG2347|consen 519 LSQSDGKAKSPFGDADISRSLLPWMPLAIKTVRKACQSLEALESLPHDALQPIQKLITE---ARLQCLSSWMRASTERIS 595 (934)
T ss_pred hhhhcccccCCcCCcccccccCccchhHHHHhHHHHHHHHHhhhChHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 88888887766666654444449999999999999999999977998888888888877 788889999999999999
Q ss_pred ---cccCcccccccccCCCCCCcccchHHHHHHHHHHHHHHHHHHhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 001404 648 ---KDETWIPVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEATKSEDMYAQLLEIQESVRLSFLNRFLDF 724 (1084)
Q Consensus 648 ---~lEdW~~~~~~e~~~~~~~iT~LP~~Fe~~i~~~mqki~~~~~~~~~E~~~~~dv~~~l~q~~~~Vr~~F~~~~~~f 724 (1084)
..|+|+++.+.+|+ .++|+||.+||++|+++|+.+..++.+..+|....+ ...|+++|...+++...+|
T Consensus 596 ~l~~re~W~~~s~~~rn---~s~t~LP~~fEt~ivssl~q~~~~~l~~~gEa~~f~-----~~~~~~~i~el~I~~~~~f 667 (934)
T KOG2347|consen 596 TLAKRETWIPDSILERN---RSITYLPLAFETVIVSSLEQVNSVLLSFEGEAALFE-----QPDMQAEIEELSISVRLAF 667 (934)
T ss_pred HHHhhhccccchhhhcc---cchhhhhHHHHHHHhhhHHhhhhHHhhccccccccC-----chHHHHHHHHHHHHHHHHH
Confidence 79999999877886 569999999999999999999999888777766433 2455555555566666666
Q ss_pred HHhHHHHhhhhhhccCCcccc-----ccccCCCCCCCCCCcCCCCCCCCCcCceeeheecchhHHHHhhHHHHHHHHHhh
Q 001404 725 AGHLEHIASELAQNKSNKESQ-----HLQNGYSSDPCTESLSDIPGSVVDPHQRLLIVISNIGYCKDELSSELYNKYKDI 799 (1084)
Q Consensus 725 ~~~Le~la~~~~~~~~~de~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~RLLltLSN~~~lr~~vip~L~~~fe~~ 799 (1084)
..|+|+++.-.++-. -+.+. -.++++....++.++.+.++.+++|++|||+||||++||+...+|.|.+.|+.-
T Consensus 668 l~c~e~L~~h~~~~~-~~~~q~~t~~~~~~~~~~~~qed~~~ns~~~~~~~~qrlLi~LsN~~yc~~~~~~~l~n~fk~~ 746 (934)
T KOG2347|consen 668 LNCFEDLAIHLEQIG-ADLSQLTTQIEGQNGFSNAHQEDISINSADSVVDPEQRLLIVLSNIGYCKDILAPTLLNIFKYT 746 (934)
T ss_pred HHHHHHhhhcccccC-CchhhcccccccccccccccchhhhcccccccCChhheeEEEeccHHHHHHHHHHHHHHHHHHH
Confidence 666666664111100 01111 014444444444455556677889999999999999999999999999999766
Q ss_pred cccccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHH
Q 001404 800 WLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHA 879 (1084)
Q Consensus 800 f~~~~~~~~~~~~ir~~~~~l~qLD~rLfe~Y~~~Ka~~L~~~I~~gil~~gidW~~~p~P~~VRpYvyE~Ll~LV~VHA 879 (1084)
|-...+ .+.+..++|++|+.+||+.||+.|+++|++++|||||.+||+|..+|+|++||+|++|+|++||+|||
T Consensus 747 ~~~~~k------~iE~is~s~s~l~s~l~e~Yi~~k~~~i~~alEp~~~~~~~~W~~~~~~~~irdYa~E~l~~lV~Vha 820 (934)
T KOG2347|consen 747 WLLSRK------NIEDISMSLSGLGSKLFENYIEDKADPIRGALEPYLLDGGIQWGMAPPVKGIRDYAKEALHNLVAVHA 820 (934)
T ss_pred hhcccc------cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccchhhccccccccCCCccchHHHHHHHHHHHHHHHH
Confidence 655322 34444578999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccchhhHHHHHHHHHHHHHHHHHHhhhhhcccc-ccccCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHHH
Q 001404 880 EVFAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNN-LKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLL 958 (1084)
Q Consensus 880 EV~t~a~~Ll~rVLs~Lve~laeelL~~f~~~~~~~-v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~~~~~~~ 958 (1084)
|||++||+|+++||..+|+.++++|+++|+ | |.+|+.+|.+|+++|||||+++|++|+|+.|+..|+|
T Consensus 821 Evf~iap~Ll~kiL~~~ve~i~d~L~~l~~-----~~v~s~S~nG~lQi~vdl~~l~~~l~~Ylt~~a~~slkq------ 889 (934)
T KOG2347|consen 821 EVFAIAPQLLDKILGETVEGISDELLRLFS-----CDVQSFSANGALQIMVDLEYLEDVLGPYLTKDAKESLKQ------ 889 (934)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHHhh-----hhhhccCCCcceeeeeeHHHHHHHHHHhccHHHHHHHHH------
Confidence 999999999999999999999999999998 7 9999999999999999999999999999999999995
Q ss_pred HHHhhHHHhhhcCCCCCCCCCCCCchhhhhhhcCCCCCChHHHHHHHHHHHHHHHHHHHhhhhcch
Q 001404 959 EKATVSVAEAVENPGHHRRPTRGSEDALADERQQGMTVSPDDLIALAQQYSSELLQAELERTRINT 1024 (1084)
Q Consensus 959 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1024 (1084)
|+|.+++.+.+ +++|+.++...+++++ ..|+.||. .++++||+|+
T Consensus 890 --ale~l~~~~~g-----~dtr~lee~ln~~k~s---------m~l~Lqc~-----~a~~~t~~~t 934 (934)
T KOG2347|consen 890 --ALEALSECLSG-----GDTRRLEECLNDDKQS---------MRLQLQCF-----QALEDTRFNT 934 (934)
T ss_pred --HHHHhhhhccC-----cchhhHHHHHHHhhHH---------HHHHHHHH-----HHhhhhhcCC
Confidence 88899988888 5999999999999998 67899996 7899999985
No 2
>PF15469 Sec5: Exocyst complex component Sec5
Probab=100.00 E-value=3.1e-38 Score=328.49 Aligned_cols=179 Identities=42% Similarity=0.720 Sum_probs=171.1
Q ss_pred hHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCC-CCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHH
Q 001404 239 TQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEED-PEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGML 317 (1084)
Q Consensus 239 ~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~-~~~~~t~~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L 317 (1084)
+++||.||++||++||+||+|||+||.+|+.++.. ..+.++..|.+.|+++...++.+|.||++++++++++++++++|
T Consensus 1 s~~lk~LV~~Nf~~Fv~~k~tid~i~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~~~l~~l 80 (182)
T PF15469_consen 1 SEDLKSLVKENFDKFVSCKDTIDDIYEEFRNMKTEAQQDSGTEKLEESLNEASSKANSVFKPLLERREKADKLRNALEFL 80 (182)
T ss_pred CHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 47899999999999999999999999999976543 33467999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccCc--chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHH
Q 001404 318 QRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPS--HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLEN 395 (1084)
Q Consensus 318 ~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~~--~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~ 395 (1084)
+|++|||+||++|++||++|+|+.||++|.||++++..+ ++++|++||.|||++|++||..||++|.+++.+.+++++
T Consensus 81 ~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~ 160 (182)
T PF15469_consen 81 QRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLK 160 (182)
T ss_pred HHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999999999999999999999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCChHHHHHHHh
Q 001404 396 TVRLLLELEPESDPVWHYLNVQ 417 (1084)
Q Consensus 396 lI~lLleL~~~~dPiw~fL~sq 417 (1084)
+|++|++|++++||||.||.+|
T Consensus 161 ~i~~Ll~L~~~~dPi~~~l~~q 182 (182)
T PF15469_consen 161 LIRKLLELNVEEDPIWYWLESQ 182 (182)
T ss_pred HHHHHHhCCCCCCHHHHHHHcC
Confidence 9999999999999999999875
No 3
>KOG2346 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=1.3e-30 Score=293.04 Aligned_cols=205 Identities=19% Similarity=0.275 Sum_probs=197.6
Q ss_pred ccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCC
Q 001404 198 KLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS 277 (1084)
Q Consensus 198 ~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~ 277 (1084)
..|+++++|||+.||.++.+++++++|++.+..|.++|+.++++||+|||+||||||+|+|||++|+++|..|+++|.+
T Consensus 25 ptDlngahFDpEvyldkL~REcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~- 103 (636)
T KOG2346|consen 25 PTDLNGAHFDPEVYLDKLPRECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDG- 103 (636)
T ss_pred ccccCCCCCCHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhh-
Confidence 5689999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhh-ccCc
Q 001404 278 GTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSI-ALPS 356 (1084)
Q Consensus 278 ~t~~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L-~~~~ 356 (1084)
|..+|..+++.+.++...|.++++.+.++-....++.+.+|+|+||.+|++|++.+.|..|++.|..|... -+|.
T Consensus 104 ----L~~~ms~i~~~s~~l~g~L~ekre~I~kLg~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L~qY~ 179 (636)
T KOG2346|consen 104 ----LEEVMSSIQSKSDGLAGSLFEKRELIKKLGQRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKLRQYD 179 (636)
T ss_pred ----HHHHHHHHhhhhccccchhHHhHHHHHHhcCCccchhhhHHHhhhHHHHHHhccccccchhhccccccccchhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874 5677
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCC
Q 001404 357 HVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPES 407 (1084)
Q Consensus 357 ~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~lI~lLleL~~~~ 407 (1084)
+.|.|+-+...+++|+..+.++|.++|.++..+.+...+++.+|+.|+.+.
T Consensus 180 ~~psfq~~~~~seei~~rl~~qL~~rlr~~~sga~~raEAv~LLl~lg~p~ 230 (636)
T KOG2346|consen 180 GRPSFQEDDVPSEEIRLRLVAQLGTKLRSDSSGAQARAEAVVLLLQLGVPV 230 (636)
T ss_pred CCCcHHHhccchHHHHHHHHHHHHHHhccCCCCchhHHHHHHHHHhcCCCh
Confidence 799999999999999999999999999999999999999999999998763
No 4
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=99.49 E-value=1.7e-12 Score=148.30 Aligned_cols=205 Identities=17% Similarity=0.280 Sum_probs=170.9
Q ss_pred CCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhh
Q 001404 217 QNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRA 296 (1084)
Q Consensus 217 ~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i 296 (1084)
.+.++++|......|..++.....+++.|...||..||.+++++..+...+...... +..|.+.|.++...+...
T Consensus 5 ~s~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~-----l~~L~~~l~~L~~~~~~f 79 (338)
T PF04124_consen 5 TSLSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDS-----LDSLLDSLPELDEACQRF 79 (338)
T ss_pred ccCCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999999999999999998865432 334667777666655553
Q ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-CcchhhHHHHHHHHHHHHHHH
Q 001404 297 FEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVNILKRVLEEVEKVMQEF 375 (1084)
Q Consensus 297 ~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~-~~~v~vf~kV~~EVE~ii~~~ 375 (1084)
-...-...++-.+...++.-..+...+++||..|..||++|.|++|++-+..+++|.. +.+++++++|+.+|+..+..+
T Consensus 80 ~~~~~~~~~~r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~~~lv~~i~~ev~~~~~~m 159 (338)
T PF04124_consen 80 SSKAQKISEERKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQSRFPNIPLVKSIAQEVEAALQQM 159 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3333222333344455666667788999999999999999999999999999999875 567999999999999999999
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHH
Q 001404 376 KAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEK 427 (1084)
Q Consensus 376 r~~L~~kL~~~~~s~ee~~~lI~lLleL~~--~~dPiw~fL~sq~~~I~~~le~ 427 (1084)
...|.++|..+ .....+.++|.+|..++. +......||.++..|+.+.++.
T Consensus 160 l~~Li~~L~~~-l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~ 212 (338)
T PF04124_consen 160 LSQLINQLRTP-LKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEE 212 (338)
T ss_pred HHHHHHHHcCc-ccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHH
Confidence 99999999888 899999999999999966 3346799999999999886654
No 5
>KOG2069 consensus Golgi transport complex subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.07 E-value=7.1e-09 Score=121.87 Aligned_cols=213 Identities=16% Similarity=0.261 Sum_probs=168.5
Q ss_pred CCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhH
Q 001404 203 SDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHL 282 (1084)
Q Consensus 203 S~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L 282 (1084)
++.| ..|+.++. ...+++|.+.-..|..++...+++++.|...||..||.+...++++|..+..++.+..+ |
T Consensus 18 ~~~~--~~~v~~l~-~~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~-----l 89 (581)
T KOG2069|consen 18 SPEM--DAYVRELT-TKPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKE-----L 89 (581)
T ss_pred Cchh--HHHHHHHc-CCcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHH-----H
Confidence 7778 77999988 78899999999999999999999999999999999999999999999999987665332 3
Q ss_pred HhhHHHHHHHHHhhhhhHHHhHHHHHHH----HHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccc
Q 001404 283 FKLMQGVSSQANRAFEPLFERQAQAEKI----RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSH 357 (1084)
Q Consensus 283 ~~~L~~i~~~a~~i~~pLlerr~KadkL----r~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~-~~~ 357 (1084)
.-.+....+.+++ ..+....+... +.++........+.+||..|.+||+.|.|+.+.+--+.+.+|-. .+.
T Consensus 90 ~l~~~~L~s~~~~----f~~~~~~i~e~~~~~~~~l~~~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~ 165 (581)
T KOG2069|consen 90 SLQLPELTSPCKR----FQDFAEEISEHRRLNSLTLDKHPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGT 165 (581)
T ss_pred HHhhHHhhhHHHH----HHHHHHHhhHhHHHHHHHHhhcchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhccc
Confidence 3334443333333 22222222222 33344444457899999999999999999999999888888865 355
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCC--CCChHHHHHHHhHHHHHHHHHHH
Q 001404 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEP--ESDPVWHYLNVQNHRIRGLFEKC 428 (1084)
Q Consensus 358 v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~lI~lLleL~~--~~dPiw~fL~sq~~~I~~~le~~ 428 (1084)
++++++|..+|+..+..+-.+|..+|+.+ ....++.+.|.||..+.+ .......||..+..|+.+.++..
T Consensus 166 ~pvi~~i~~~v~~tv~~ll~qL~~~l~~p-l~l~~cirvv~ylr~~~~~t~~~LRl~fl~~rd~~l~k~l~~I 237 (581)
T KOG2069|consen 166 IPVIQEIATEVEQTVQKLLEQLIQQLRTP-LQLPECIRVVGYLRRMAVLTENQLRLKFLQARDAWLEKILEDI 237 (581)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhc
Confidence 79999999999999999999999999988 567899999999987755 22377788888888887766654
No 6
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=98.82 E-value=8.2e-09 Score=95.26 Aligned_cols=70 Identities=17% Similarity=0.428 Sum_probs=67.4
Q ss_pred CCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 001404 201 YFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (1084)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~ 270 (1084)
+++++|||+.|+....++.|+.++.+-...|..+|+..+++||.+||+||..||.|.++|..|..++..+
T Consensus 1 ~~~~~fd~~~~~~~~l~~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~fI~as~~I~~m~~~~~~l 70 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLKNSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRDFIEASDEISSMENDLSEL 70 (87)
T ss_pred CCCCcCCHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999999999999999999998764
No 7
>KOG2033 consensus Low density lipoprotein B-like protein [Lipid transport and metabolism]
Probab=98.67 E-value=0.002 Score=77.87 Aligned_cols=198 Identities=15% Similarity=0.196 Sum_probs=146.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHH
Q 001404 215 VHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQAN 294 (1084)
Q Consensus 215 vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~ 294 (1084)
+..+.|.+++..-...++.+|+.+.++|.++|-+-|--.|.|.|||..|.+--.. |.+.|.++...+.
T Consensus 13 LFethsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYRDLleAADtI~hM~sla~~------------L~~~I~~t~~ncr 80 (863)
T KOG2033|consen 13 LFETHSVSEIREVEKKIRSVIEGKREELRQMVGERYRDLLEAADTIRHMCSLADK------------LASDIANTRVNCR 80 (863)
T ss_pred HHHhCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhhhh
Confidence 3456689999999999999999999999999999999999999999999865432 4455555544444
Q ss_pred hhh------hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-----C------cc
Q 001404 295 RAF------EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-----P------SH 357 (1084)
Q Consensus 295 ~i~------~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~-----~------~~ 357 (1084)
.+. .|=+..+. -...+.-++.-+.|.|.++|..|-.|+..+.+=.|..-|-.++.+-. + .+
T Consensus 81 sL~a~svA~tp~raeqn--p~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLdsss~ll~n 158 (863)
T KOG2033|consen 81 SLHANSVAKTPGRAEQN--PAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDSSSMLLKN 158 (863)
T ss_pred hcccccccCCcchhhcC--chhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCCCcHHHhh
Confidence 433 22222222 13345566778899999999999999999999999999999987543 1 45
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHhcCCCCCCh---HHHHHHHhHHHHHHHHHH
Q 001404 358 VNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVRLLLELEPESDP---VWHYLNVQNHRIRGLFEK 427 (1084)
Q Consensus 358 v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~lI~lLleL~~~~dP---iw~fL~sq~~~I~~~le~ 427 (1084)
.|++.+=|.-++---.++.......|.+...+..-..+++.-+.=|+ +.|| .-.||.+++.||...++.
T Consensus 159 fP~l~~Qw~a~r~F~stI~q~s~~~Lld~glsd~atvdaL~aiaLLd-esdpsqvLelFL~~Rk~~il~lLn~ 230 (863)
T KOG2033|consen 159 FPALTNQWVATRPFHSTIEQQSCSTLLDIGLSDWATVDALAAIALLD-ESDPSQVLELFLEKRKEHILHLLND 230 (863)
T ss_pred cHHHHHHHHHHhhHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 78888888888877777778888888888666543333333222221 2344 358999999999999984
No 8
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.18 E-value=0.00021 Score=80.71 Aligned_cols=197 Identities=9% Similarity=0.164 Sum_probs=152.3
Q ss_pred CCCCCHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCch
Q 001404 203 SDSFNAKLFLSRVHQN--TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTA 280 (1084)
Q Consensus 203 S~~FdP~~FLs~vH~~--tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~ 280 (1084)
.++|||..|..+..+. .+.+++.+....|....+.-+..+-..|-.|++.|+.+-..++.+..++...-.. ..
T Consensus 10 ~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~-----~~ 84 (291)
T PF10475_consen 10 DEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVI-----CK 84 (291)
T ss_pred CCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HH
Confidence 4599999986555544 4788888889999999999999999999999999999999999999999864221 22
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc-Ccchh
Q 001404 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL-PSHVN 359 (1084)
Q Consensus 281 ~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~-~~~v~ 359 (1084)
.+...|+.+......---.++....|-.++..++..|+..+.+.+.=..|+..+..|||..|++-+...+.+.. ..+..
T Consensus 85 ~~R~~L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~ 164 (291)
T PF10475_consen 85 NLRRNLKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYS 164 (291)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccch
Confidence 34555555443322222336677778888999999999999999999999999999999999999999988654 46778
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHhcCC
Q 001404 360 ILKRVLEEVEKVMQEFKAMLYKSMEDP--HIDLTNLENTVRLLLELE 404 (1084)
Q Consensus 360 vf~kV~~EVE~ii~~~r~~L~~kL~~~--~~s~ee~~~lI~lLleL~ 404 (1084)
.|+.+-..++.....+...|-..|... ..+.+.+.+++..-.-||
T Consensus 165 c~~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLg 211 (291)
T PF10475_consen 165 CVRHLSSQLQETLELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLG 211 (291)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 888887777777777777777766655 344566777776544444
No 9
>KOG2176 consensus Exocyst complex, subunit SEC15 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.97 E-value=0.12 Score=64.41 Aligned_cols=121 Identities=11% Similarity=0.183 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHH
Q 001404 223 DLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFE 302 (1084)
Q Consensus 223 dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLle 302 (1084)
+...-..+|+..|++++.++..|-..||.-||.+.+-+.+|.++.++....+.+ +...++.+...=-.....+..
T Consensus 45 ~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd-----~N~rLQ~~g~eLiv~~e~lv~ 119 (800)
T KOG2176|consen 45 QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSD-----TNRRLQESGKELIVKKEDLVR 119 (800)
T ss_pred CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhh-----hhhHHHHHHHHHHHHHHHHHH
Confidence 444556678888888999999999999999999999999999988876544433 333333322211123344667
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHH
Q 001404 303 RQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKK 348 (1084)
Q Consensus 303 rr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~k 348 (1084)
++..-.++..+++.++..--++++=+++++.+++|.|=.|++.-..
T Consensus 120 ~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLktle~ 165 (800)
T KOG2176|consen 120 CRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKTLES 165 (800)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 7777778889999999999999999999999999999777664433
No 10
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=97.81 E-value=0.0035 Score=73.61 Aligned_cols=166 Identities=11% Similarity=0.272 Sum_probs=123.5
Q ss_pred CCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh-------hhhHhhhhhHHHHHHHhhhhcCCCC
Q 001404 204 DSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNF-------DCFVSCKTTIDDIESKLKRIEEDPE 275 (1084)
Q Consensus 204 ~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF-------~kFI~akdTId~m~~~mk~~e~~~~ 275 (1084)
++|||-.||.++.++ .|+.+|-.-+..|...|..+++++..+|.+-- ..+-.++..|..+..++..+....+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999974 67899999999999999999999999998765 2344555556565555554322110
Q ss_pred CCCchhHHhhHHHHHHHHHhhhhhH--HHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhc
Q 001404 276 GSGTAHLFKLMQGVSSQANRAFEPL--FERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA 353 (1084)
Q Consensus 276 ~~~t~~L~~~L~~i~~~a~~i~~pL--lerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~ 353 (1084)
. =+..+.++ ...+ |+... .+|-.++.+|+|++-|.+-=..|...+++++|.++..-+.-++.|.
T Consensus 82 ~-----sE~~V~~i-------t~dIk~LD~AK--rNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~ 147 (383)
T PF04100_consen 82 E-----SEQMVQEI-------TRDIKQLDNAK--RNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELL 147 (383)
T ss_pred H-----HHHHHHHH-------HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0 01111111 1111 12222 2567788999999999999999999999999999999999999875
Q ss_pred ----cCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001404 354 ----LPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1084)
Q Consensus 354 ----~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL 383 (1084)
.|..++-+..++..|+.+-..++.++..-+
T Consensus 148 ~~F~~yksi~~I~~L~~~i~~l~~~L~~qI~~df 181 (383)
T PF04100_consen 148 EHFKPYKSIPQIAELSKRIDQLQNELKEQIFEDF 181 (383)
T ss_pred HHHHcccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999998888888877654
No 11
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=97.61 E-value=0.36 Score=60.02 Aligned_cols=161 Identities=14% Similarity=0.220 Sum_probs=108.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCC----CchhHHhhHHHHHHHH
Q 001404 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGS----GTAHLFKLMQGVSSQA 293 (1084)
Q Consensus 218 ~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~----~t~~L~~~L~~i~~~a 293 (1084)
.-+.++|...+..|.+.|....++.+..|.+||..|+....+.+.+..+.+....+.... ....+...+...
T Consensus 6 ~l~~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a---- 81 (593)
T PF06248_consen 6 PLSKEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDA---- 81 (593)
T ss_pred CCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH----
Confidence 346789999999999999999999999999999999988888877776655432221000 000111111111
Q ss_pred HhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC------cchhhHHHHHHH
Q 001404 294 NRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP------SHVNILKRVLEE 367 (1084)
Q Consensus 294 ~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~------~~v~vf~kV~~E 367 (1084)
...+..-+.++.....++.+|++.+.+=++=..+...+..|+|-.|++.-.+++.++.. .+..+++-+-.+
T Consensus 82 ---~~e~~~L~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e 158 (593)
T PF06248_consen 82 ---AEELQELKRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDE 158 (593)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHH
Confidence 11133334444555555556666655555557888999999999999999999987642 235777777777
Q ss_pred HHHHHHHHHHHH---HHhhcC
Q 001404 368 VEKVMQEFKAML---YKSMED 385 (1084)
Q Consensus 368 VE~ii~~~r~~L---~~kL~~ 385 (1084)
....-+.+...| |+++..
T Consensus 159 ~~~lr~~L~~~L~~~w~~lv~ 179 (593)
T PF06248_consen 159 YSELRENLQYQLSEEWERLVQ 179 (593)
T ss_pred HHHHHHHHHHHHHHHHHhhee
Confidence 776666666666 666644
No 12
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=97.22 E-value=0.0016 Score=74.42 Aligned_cols=139 Identities=14% Similarity=0.223 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHhhhHhHHHHHhhhhccCCCCCCCCCCCCccchHHHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHH
Q 001404 822 GLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAK-PLLDKTLGILVEGL 900 (1084)
Q Consensus 822 qLD~rLfe~Y~~~Ka~~L~~~I~~gil~~gidW~~~p~P~~VRpYvyE~Ll~LV~VHAEV~t~a~-~Ll~rVLs~Lve~l 900 (1084)
.=|.+||+ -+..|.+-+.+.+ .+||.+..+|++.++|+.+++..|-.+=+.+.+.-| .+-..++-..+..+
T Consensus 144 ~Ae~~I~~-lv~~KIDe~lela-------~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP~~v~~~~~~~a~~hi 215 (311)
T PF04091_consen 144 AAEKRIFE-LVNSKIDEFLELA-------EYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLPPSVKQLVYFSACDHI 215 (311)
T ss_dssp HHHHHHHH-HHHHHHHHHHTT---------TT--------S--HHHHHHHHHHHHHHHTTTTTSH-HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHhhc-------ccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34556663 4677877776443 789999999999999999999999999988776666 46677777788999
Q ss_pred HHHHHHhhhhhccccccccCcchhHHHHhhHHHHHHhhccc-----CChhHHHHHHHHHHHHHHHHhhHHHhhhcC
Q 001404 901 IDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPY-----FTHDARESLKNLQGVLLEKATVSVAEAVEN 971 (1084)
Q Consensus 901 aeelL~~f~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y-----~T~~A~~~~~~~~~~~~~~~~~~v~~~~~~ 971 (1084)
++.++..+-. ..|++|+++|+.|..+||.|+++....= ......+.|.++|..|==-..+.+.+-.|+
T Consensus 216 s~~l~~~Ll~---~~vk~in~~al~~~~~Dv~~lE~f~~~~~~~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~ 288 (311)
T PF04091_consen 216 SESLLDLLLS---DDVKRINMNALQNFDLDVKYLESFADSLPVPGNNIPSLRETFAELRQLVDLLLSDDWEEYLDP 288 (311)
T ss_dssp HHHHHHHHT------------TTHHHHHHHHHHHHHHHTT-SSSS--SSTTGGGGHHHHHHHHHHH----------
T ss_pred HHHHHHHhcC---CcccccCHHHHHHHHHHHHHHHHHHHhCcCcccccccHHHHHHHHHHHHHHHhcCCHHHHhCc
Confidence 9999999953 2699999999999999999999998777 555667777777765543345566666444
No 13
>KOG2307 consensus Low density lipoprotein receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.20 E-value=0.94 Score=54.70 Aligned_cols=194 Identities=16% Similarity=0.219 Sum_probs=112.5
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 001404 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (1084)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t 279 (1084)
.+.+++||.+.|++......++++|...| .-=.+.+..+|-.|+.+-|--||+--..+-.|-..+..++++.+.
T Consensus 27 eFmkedFdve~f~s~~R~~v~letLrddL---rlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~q--- 100 (705)
T KOG2307|consen 27 EFMKEDFDVERFMSLARQKVDLETLRDDL---RLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQ--- 100 (705)
T ss_pred hhccccCCHHHHHHHHhccCCHHHHHHHH---HHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHH---
Confidence 46689999999999999999999998754 455677888999999999999999988877777777766554321
Q ss_pred hhHHhhHHHHHHHHHhhhh-------hHHHhHHHHH---HHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 001404 280 AHLFKLMQGVSSQANRAFE-------PLFERQAQAE---KIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (1084)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~-------pLlerr~Kad---kLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kA 349 (1084)
|.+-|..+-..-..-.. ..-.+|++-. .+..++..++|...++.=|.+=...++.-..+.+--+.+++
T Consensus 101 --lreei~s~rgsV~ea~~alr~q~se~~~~Re~k~~lldl~~v~~~ieKL~k~L~s~psk~q~~~a~sLERiAlelnql 178 (705)
T KOG2307|consen 101 --LREEIKSTRGSVGEAERALRQQCSELCSNREKKIELLDLIYVLVAIEKLSKMLLSPPSKEQQDGATSLERIALELNQL 178 (705)
T ss_pred --HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccchHHHHHHHHHHH
Confidence 22222222111111111 1222233222 22334445555555554444434445555667777777777
Q ss_pred hhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCChhHHHHHHHHHhcCCC
Q 001404 350 KSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP-----HIDLTNLENTVRLLLELEP 405 (1084)
Q Consensus 350 k~L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~-----~~s~ee~~~lI~lLleL~~ 405 (1084)
+....+. ++..+..++..|+..+..|.+.|.-. ....+.+.+|.+.-.-|+.
T Consensus 179 kf~a~h~----k~~l~p~~e~ria~~~~~L~qsl~~lf~eglqsa~~~l~nclriYatld~ 235 (705)
T KOG2307|consen 179 KFHASHL----KGSLFPHSEERIAAEKIILSQSLAVLFAEGLQSAAGDLQNCLRIYATLDL 235 (705)
T ss_pred HHHHHHh----hcccCcchhhHHhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHhh
Confidence 7654321 12233344445555554444433211 2245566666666555544
No 14
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.16 E-value=0.0032 Score=63.28 Aligned_cols=113 Identities=18% Similarity=0.319 Sum_probs=80.6
Q ss_pred CCCCCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCC
Q 001404 202 FSDSFNAKLFLSRVHQ-----NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEG 276 (1084)
Q Consensus 202 sS~~FdP~~FLs~vH~-----~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~ 276 (1084)
-+++|||..|-+.+.. +.+--++...+..|...|+..+..++.+|.+||..+++-...+..+..-+..++
T Consensus 4 l~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~----- 78 (132)
T PF10392_consen 4 LSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVR----- 78 (132)
T ss_pred CCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHH-----
Confidence 3899999999999987 445667888999999999999999999999999999999999988887555433
Q ss_pred CCchhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcC
Q 001404 277 SGTAHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNL 326 (1084)
Q Consensus 277 ~~t~~L~~~L~~i~~~a~~i~~pLlerr~Ka-------dkLr~vl~~L~R~kfLFeL 326 (1084)
..+..+....+++-..|.+-.+++ .++..+..+|++--.++.|
T Consensus 79 -------~~v~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L 128 (132)
T PF10392_consen 79 -------SSVESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQL 128 (132)
T ss_pred -------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444 4445555556555444443
No 15
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.35 E-value=0.0042 Score=62.32 Aligned_cols=68 Identities=21% Similarity=0.359 Sum_probs=0.4
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 001404 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (1084)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~ 270 (1084)
.+..++|||..||...++-.++++|...|..+.+. ++++|-.||.+||..||+--..+..+-..+..+
T Consensus 7 ~F~~~~Fd~d~Fl~~~~~~~~Le~L~~dL~~~~~~---L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l 74 (133)
T PF06148_consen 7 EFTKPDFDVDEFLSSNRRYVSLEDLRKDLRSYSKE---LKNELIELINDDYADFVSLSTNLVGMDEKIEEL 74 (133)
T ss_dssp ----------------------------------------------------------------------H
T ss_pred ccCCCCCCHHHHHHHccCCCCHHHHHHHHHHHHHH---HHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHH
Confidence 45679999999999999999999999987777655 468999999999999999888777766555443
No 16
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=95.78 E-value=0.095 Score=53.42 Aligned_cols=125 Identities=17% Similarity=0.199 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchh
Q 001404 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAH 281 (1084)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~ 281 (1084)
-.++|+|-..-..+.-++|. .+.+.+..+.+.-+..+..|+.+|.+||..|-++-.+--.|...+...... +..
T Consensus 17 ~~~~~~pv~~al~~ld~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~-----i~~ 90 (142)
T PF04048_consen 17 LTDDFNPVELALSLLDDSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQER-----IRE 90 (142)
T ss_pred hcCCCcHHHHHHHhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHH
Confidence 36899999999999977776 478888889999999999999999999999999999988888888764332 222
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHh
Q 001404 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRG 332 (1084)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~ 332 (1084)
+.+.|..+...=..-...|.+-.....+.+.++.+|.....+-.+|..|..
T Consensus 91 lK~~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~ 141 (142)
T PF04048_consen 91 LKESLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIES 141 (142)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence 444444433222222233555556667788899999999999999998865
No 17
>KOG3691 consensus Exocyst complex subunit Sec8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.53 E-value=0.24 Score=62.12 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 001404 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (1084)
Q Consensus 218 ~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (1084)
..+.+++...+..|+..-+.-+..++.||..++.-|-.|..+-.++-+.+.+-.+. +-.+.+++......-+.=.
T Consensus 42 Se~~e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rer-----I~~vK~~L~~~k~ll~~~r 116 (982)
T KOG3691|consen 42 SEDTEPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRER-----IHNVKNNLEACKELLNTRR 116 (982)
T ss_pred CCcccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcCH
Confidence 34556677888888888888899999999999999999999988888777654221 2224555554433333333
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cchhhHHHHHHHHHH
Q 001404 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHVNILKRVLEEVEK 370 (1084)
Q Consensus 298 ~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~--~~v~vf~kV~~EVE~ 370 (1084)
..|.+-..+.-+.+.|+++|.....+-.+|.++..+|.++.|-+|-.--.+|..+... ..|.+++.+-.|.+.
T Consensus 117 deLqklw~~~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~lng~L~~VEgLs~l~~ele~ 191 (982)
T KOG3691|consen 117 DELQKLWAENSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLNGPLDGVEGLSDLRSELEG 191 (982)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhHHHHHHHH
Confidence 4455555666677899999999999999999999999999999999999999887653 234444444444443
No 18
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=95.37 E-value=13 Score=48.05 Aligned_cols=218 Identities=13% Similarity=0.210 Sum_probs=131.2
Q ss_pred CCCCCCCHHHHHHHhcCCCCH----HHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhH----hhhhhHHHHHHHhhhhcC
Q 001404 201 YFSDSFNAKLFLSRVHQNTSS----ADLEAGALALKTDLKGRTQQRKQLVKDNFDCFV----SCKTTIDDIESKLKRIEE 272 (1084)
Q Consensus 201 isS~~FdP~~FLs~vH~~tS~----~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI----~akdTId~m~~~mk~~e~ 272 (1084)
+++++|||+.+++...+..+- ..+-.-+..|...++-..+++-.=|++.-..-+ ++.--++.|..+......
T Consensus 5 f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~~ 84 (766)
T PF10191_consen 5 FSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQE 84 (766)
T ss_pred hCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 678999999999987765433 334334677777777677777666777666655 333444455544443332
Q ss_pred CCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhh-
Q 001404 273 DPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKS- 351 (1084)
Q Consensus 273 ~~~~~~t~~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~- 351 (1084)
.|.. +.+.++.+...+......|.+-..=-.++..+...|+.-.-.-.|-+.+...++.|||..+-+.-...++
T Consensus 85 ~~~~-----v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~s 159 (766)
T PF10191_consen 85 QMAS-----VQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRS 159 (766)
T ss_pred HHHH-----HHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 2211 2233333222222222222221111133445555666666666777888889999999998887777654
Q ss_pred hccCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC------CCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHH
Q 001404 352 IALPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP------HIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLF 425 (1084)
Q Consensus 352 L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~------~~s~ee~~~lI~lLleL~~~~dPiw~fL~sq~~~I~~~l 425 (1084)
|.--.++|- |.|-...++.++++|-..+... ..+++.+..++.++..+|-.+...-+|-.+++..|...-
T Consensus 160 L~~l~~~pd----~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~~~~~~~~~if~~i~R~~~l~~~Y~~~r~~~l~~~W 235 (766)
T PF10191_consen 160 LAVLQDVPD----YEERRQQLEALKNRLEALVSPQLVQALNSRDVDAAKEYVKIFSSIGREPQLEQYYCKCRKAPLQRLW 235 (766)
T ss_pred HHHHcCCCc----hhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 322223333 3455556666666654433211 345788999999999999888888888888888777665
Q ss_pred HH
Q 001404 426 EK 427 (1084)
Q Consensus 426 e~ 427 (1084)
..
T Consensus 236 ~~ 237 (766)
T PF10191_consen 236 QE 237 (766)
T ss_pred HH
Confidence 44
No 19
>KOG2180 consensus Late Golgi protein sorting complex, subunit Vps53 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.06 E-value=3.9 Score=51.01 Aligned_cols=174 Identities=12% Similarity=0.206 Sum_probs=124.1
Q ss_pred CCCCCCCHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 001404 201 YFSDSFNAKLFLSRVHQN-TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (1084)
Q Consensus 201 isS~~FdP~~FLs~vH~~-tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t 279 (1084)
+..+.|+.-.|+.++.++ .|+..+-.-...+..+|+..+..+...|..+=+.=-+.++.+++.-..+..
T Consensus 14 ~~t~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~da~~ai~e---------- 83 (793)
T KOG2180|consen 14 IPTPEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLADAQAAIEE---------- 83 (793)
T ss_pred cCCcchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHHHHHHHHHH----------
Confidence 334899999999999865 577777777778888999999999999998777666666555555444432
Q ss_pred hhHHhhHHHHHHHHHhhhhhHHHhHHHH-------HHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhh
Q 001404 280 AHLFKLMQGVSSQANRAFEPLFERQAQA-------EKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSI 352 (1084)
Q Consensus 280 ~~L~~~L~~i~~~a~~i~~pLlerr~Ka-------dkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L 352 (1084)
|...|.++.+.|++--.-+.+--..+ .+|-..+.+|+|..-|..==..|...+.++.|.++++-|.-.-.+
T Consensus 84 --L~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~lqai~~l 161 (793)
T KOG2180|consen 84 --LFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPLQAILQL 161 (793)
T ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHHHHHHHH
Confidence 44555555444443222222222222 256678889999999988888899999999999999999987776
Q ss_pred c----cCcchhhHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 001404 353 A----LPSHVNILKRVLEEVEKVMQEFKAMLYKSMEDP 386 (1084)
Q Consensus 353 ~----~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~ 386 (1084)
. .|..++-+...-.-|+++=..+..++.+-+.+.
T Consensus 162 l~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~ 199 (793)
T KOG2180|consen 162 LNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAA 199 (793)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 366777777777777777777777666665443
No 20
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=93.58 E-value=0.85 Score=55.51 Aligned_cols=134 Identities=12% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHhHHHHHhhhhccCCCCCCCCCC-----CCccchHHHHHHHHHHHHHHHHh-ccchhhH
Q 001404 816 LVMSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA-----VKGVRDVAVELLHTLVAVHAEVF-AGAKPLL 889 (1084)
Q Consensus 816 ~~~~l~qLD~rLfe~Y~~~Ka~~L~~~I~~gil~~gidW~~~p~-----P~~VRpYvyE~Ll~LV~VHAEV~-t~a~~Ll 889 (1084)
++..+..|..+..+.++..=...+...+.+|.- .-.|...+. |..|.|-..++|..|-..=+-+. ++++.+.
T Consensus 303 ~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k--~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L~~~L~~~~f 380 (494)
T PF04437_consen 303 TISAYEKLRKRMLESIVDRVVKEFKASLKAYFK--RSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFLERSLPPADF 380 (494)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT----GGGT-------------GGGHHHHHHHHHHHHHHHTS--HHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 466677788888888888877788878777765 347876653 57899999998887766555553 3667777
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhccccccccCcchhHHHHhhHHHHHHhhcccCChhHHHHHHHHHHHH
Q 001404 890 DKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVL 957 (1084)
Q Consensus 890 ~rVLs~Lve~laeelL~~f~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~~~~~~ 957 (1084)
.++-..+++.+..-+.+-+= ...+|+.+|+.|...|+++|-.+++.|... ....|+.|.+.+
T Consensus 381 ~~i~r~ia~~l~~~l~~~Il-----~~n~Fs~~Ga~Ql~~D~~~L~~~~~~~~~~-p~~~f~~l~E~~ 442 (494)
T PF04437_consen 381 RRIWRRIASKLDDYLWESIL-----MSNKFSRAGAAQLQFDMRALFSVFSQYTPR-PEAFFKRLREAC 442 (494)
T ss_dssp HHHHHHHHHHHHHHHHHTTT-----TTS-B-HHHHHHHHHHHHHHHTTS--TTSG-G-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh-----hcCeeChhHHHHHHHHHHHHHHHHHhhccC-HHHHHHHHHHHH
Confidence 77777777777777777432 345999999999999999999999998765 557788887764
No 21
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=90.82 E-value=17 Score=44.92 Aligned_cols=83 Identities=7% Similarity=0.130 Sum_probs=65.0
Q ss_pred CCCCCCCCCccchHHHHHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCcchhHHHHhh
Q 001404 853 QWGAAPAVKGVRDVAVELLHTLVAVHAEVFA-GAKPLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLMLE 930 (1084)
Q Consensus 853 dW~~~p~P~~VRpYvyE~Ll~LV~VHAEV~t-~a~~Ll~rVLs~Lve~laeelL~~f~~~~~~~v-~~fs~~G~lQAtLD 930 (1084)
.|... +.+..++.++--....... +.+++...++..+.+.+..+.++++.+++.+|= ..-...+.-|-.-|
T Consensus 392 ~W~~~-------~~~~~I~~Ti~dY~~d~~~~l~~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D 464 (566)
T PF06046_consen 392 KWYSG-------EAVDTICATIEDYLQDFQHYLRPPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRD 464 (566)
T ss_dssp GGCTS--------HHHHHHHHHHHHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHH
T ss_pred cCcCc-------chHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHH
Confidence 79887 7888888888877777877 899999999999999999999999987553221 23467788899999
Q ss_pred HHHHHHhhcccC
Q 001404 931 LDYFETILNPYF 942 (1084)
Q Consensus 931 Iefl~qtLs~Y~ 942 (1084)
++-|.+.++.|.
T Consensus 465 ~~~l~~~F~~~~ 476 (566)
T PF06046_consen 465 AEQLKSFFSKLG 476 (566)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999999999
No 22
>PF04129 Vps52: Vps52 / Sac2 family ; InterPro: IPR007258 Vps52 complexes with Vps53 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=68.65 E-value=2.1e+02 Score=35.40 Aligned_cols=155 Identities=15% Similarity=0.222 Sum_probs=85.1
Q ss_pred HHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHH-----HHHHHHHhhhhcc--
Q 001404 282 LFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDL-----AVREYKKAKSIAL-- 354 (1084)
Q Consensus 282 L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~-----aV~dY~kAk~L~~-- 354 (1084)
+..-|..+..++..+..-|-.|+.-.++|...+ .=.-+|..|.+.|-.|+-+. ++..+.|-.....
T Consensus 47 iS~eI~~LQ~~S~~l~~~L~Nrk~~~~~L~~~i-------~~i~ipP~lI~~I~~~~v~e~~~~~~~~~~~k~~~~~~~~ 119 (508)
T PF04129_consen 47 ISSEIRSLQERSSSLNVKLKNRKAVEEKLSPFI-------DDIVIPPDLIRSICEGPVNEQYIEELLELLKKKIFFSKDQ 119 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHcCCHHHHHhHhcCCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 556666677777777766666666556665544 33459999999999998765 2333333333222
Q ss_pred -CcchhhHHHHHHHHH----HHHHHHHHHHHHh---hcCCCCChhHHHHHHHHHhcCCCCCChHHHHHHHhHHHHHHHHH
Q 001404 355 -PSHVNILKRVLEEVE----KVMQEFKAMLYKS---MEDPHIDLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFE 426 (1084)
Q Consensus 355 -~~~v~vf~kV~~EVE----~ii~~~r~~L~~k---L~~~~~s~ee~~~lI~lLleL~~~~dPiw~fL~sq~~~I~~~le 426 (1084)
.....+.+.+..+.+ +.++.+|+-|..+ |+.+..+..-.-+ .|++ -.+...||..++..+-..+.
T Consensus 120 ~~~~~~a~~d~~~~Le~L~~ka~~rir~fl~~kI~~lr~~~tn~q~iQ~---~LLk----~~~~~~FL~~~~~~~a~El~ 192 (508)
T PF04129_consen 120 SFKDSKAIKDVKPELEKLKNKAVERIRDFLLKKIKSLRKPKTNSQIIQQ---VLLK----YKELFQFLKKHSPELAKELR 192 (508)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---HHHh----hHHHHHHHHHhhHHHHHHHH
Confidence 233455555555555 3333444433333 3444322221111 2222 25678888888878777776
Q ss_pred HHHHHHHHHHHHHhHHHHHhhhhhHH
Q 001404 427 KCTLDHEARMETLHNELHERAMSDAR 452 (1084)
Q Consensus 427 ~~~~~~~~~~e~l~~rl~~~~~s~~~ 452 (1084)
..+.+...+ .....+..|+.+..+
T Consensus 193 ~~Yv~tM~~--~Y~~~F~~Y~~~L~k 216 (508)
T PF04129_consen 193 QAYVETMSW--YYSSYFKRYIRSLEK 216 (508)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHH
Confidence 666655433 223344555555544
No 23
>KOG4424 consensus Predicted Rho/Rac guanine nucleotide exchange factor/faciogenital dysplasia protein 3 [Signal transduction mechanisms]
Probab=68.55 E-value=59 Score=40.31 Aligned_cols=142 Identities=20% Similarity=0.295 Sum_probs=85.0
Q ss_pred hHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccC--cch
Q 001404 281 HLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP--SHV 358 (1084)
Q Consensus 281 ~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~--~~v 358 (1084)
.|-.+|..+...-...+-|.+..+- +-.+++|+--||.+ |.+-++.|.+|-.|+.. ...
T Consensus 109 ~lf~nIssi~~fh~qfllp~l~~r~-------Iadv~qKlAPFLKm------------YseY~knydrA~~L~~~lt~rs 169 (623)
T KOG4424|consen 109 GLFGNISSIHNFHGQFLLPELEKRI-------IADVFQKLAPFLKM------------YSEYAKNYDRALKLFQTLTSRS 169 (623)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHhhH-------HHHHHHHhhhHHHH------------HHHHHhcchhHHHHHHHHHhhC
Confidence 3445555555555556666655555 55677888888755 88889999999998874 345
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHH-HHhcCCCCCChHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 001404 359 NILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTNLENTVR-LLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARME 437 (1084)
Q Consensus 359 ~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee~~~lI~-lLleL~~~~dPiw~fL~sq~~~I~~~le~~~~~~~~~~e 437 (1084)
+.|++|.++|++.-.-=.-.|...|..|---+.-++=++. ||+.| +++||=|.=+...-+-|...-. .......++|
T Consensus 170 p~F~~vl~~Iek~~~cg~l~LqhhMiePVQRIPRYeLLLk~yl~~l-p~~d~D~~d~~ksLe~I~~aA~-HsNaai~k~E 247 (623)
T KOG4424|consen 170 PQFRKVVEEIEKQPECGGLKLQHHMIEPVQRVPRYELLLQDYLLYL-PPDDPDYKDLKKSLELISTAAS-HSNAAITKME 247 (623)
T ss_pred hHHHHHHHHHhhchhcCCccchhheechhhhhhHHHHHHHHHHHhC-CCCCcchHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999987665555666666665322333333333 34444 5566666555443333333222 2223344556
Q ss_pred HHhHHH
Q 001404 438 TLHNEL 443 (1084)
Q Consensus 438 ~l~~rl 443 (1084)
.+++-+
T Consensus 248 ~~~kLl 253 (623)
T KOG4424|consen 248 RLQKLL 253 (623)
T ss_pred HHHHHH
Confidence 665444
No 24
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=67.93 E-value=55 Score=36.38 Aligned_cols=88 Identities=10% Similarity=0.149 Sum_probs=75.5
Q ss_pred CCCCCCCCCCCccchHHHHHHHHHHHHHHHH------hccchhhHHHHHHHHHHHHHHHHHHhhhhhccccccccCcchh
Q 001404 851 GVQWGAAPAVKGVRDVAVELLHTLVAVHAEV------FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGF 924 (1084)
Q Consensus 851 gidW~~~p~P~~VRpYvyE~Ll~LV~VHAEV------~t~a~~Ll~rVLs~Lve~laeelL~~f~~~~~~~v~~fs~~G~ 924 (1084)
...|+-.-.+++=.+||..++-.+-.....+ ..+.+++...+..+++.-+.+.|++.|. .|++=+.+|-
T Consensus 78 ~vKWdvkev~~qhs~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s-----~vkKCs~eGR 152 (234)
T PF10474_consen 78 NVKWDVKEVMSQHSSYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYS-----RVKKCSNEGR 152 (234)
T ss_pred HcCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHH-----hccCCChhhH
Confidence 5689999899999999999999999888888 4456667888888999999999999998 4899999999
Q ss_pred HHHHhhHHHHHHhhcccCC
Q 001404 925 CQLMLELDYFETILNPYFT 943 (1084)
Q Consensus 925 lQAtLDIefl~qtLs~Y~T 943 (1084)
.+--||+..|..-|..-.+
T Consensus 153 alM~lD~q~~~~~le~l~~ 171 (234)
T PF10474_consen 153 ALMQLDFQQLQNKLEKLSG 171 (234)
T ss_pred HHHHHHHHHHHHHHHHHcC
Confidence 9999999988888755444
No 25
>PF14923 CCDC142: Coiled-coil protein 142
Probab=63.79 E-value=1.3e+02 Score=36.74 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=56.9
Q ss_pred cCCCCCCCCC---CCCccchHHHHHHHHHHHHHHHHhc-cchh----hHHHHHHHHHHHHHHHHHHhhhhhccccccccC
Q 001404 849 DSGVQWGAAP---AVKGVRDVAVELLHTLVAVHAEVFA-GAKP----LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD 920 (1084)
Q Consensus 849 ~~gidW~~~p---~P~~VRpYvyE~Ll~LV~VHAEV~t-~a~~----Ll~rVLs~Lve~laeelL~~f~~~~~~~v~~fs 920 (1084)
-.|--|.-.. -|.....||-.++-+++.==-|... ..+. .+..+|..++|.-.+-++ .++ -|||
T Consensus 257 P~g~~WR~~~~~~lP~~pS~Yv~~~v~~vl~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl---~~k-----IKFS 328 (450)
T PF14923_consen 257 PSGRYWRRSLSPELPSAPSEYVEYVVETVLEPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHIL---MHK-----IKFS 328 (450)
T ss_pred CCcchhcccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHH---Hcc-----ceee
Confidence 3455787764 4678899998888887653222222 1111 333444444444444333 222 3999
Q ss_pred cchhHHHHhhHHHHHHhhcc---cCChhHHH
Q 001404 921 ANGFCQLMLELDYFETILNP---YFTHDARE 948 (1084)
Q Consensus 921 ~~G~lQAtLDIefl~qtLs~---Y~T~~A~~ 948 (1084)
..|++|.+.|..++++-|.. =+++++++
T Consensus 329 ~~GAlQL~~DF~~Vr~wl~~e~~~Ls~e~rq 359 (450)
T PF14923_consen 329 LQGALQLRQDFGYVRDWLESECSGLSPELRQ 359 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccCCHHHHH
Confidence 99999999999999998765 34444443
No 26
>KOG2115 consensus Vacuolar sorting protein VPS45 [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.79 E-value=6.4e+02 Score=33.38 Aligned_cols=125 Identities=14% Similarity=0.202 Sum_probs=79.6
Q ss_pred hhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhh
Q 001404 251 DCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTI 330 (1084)
Q Consensus 251 ~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L 330 (1084)
+.|.-|..+.+++..++.+.-+ -+..|.++|..+....-.-...+++-..+-.+....+..|+-...+.+--..+
T Consensus 268 dsFfha~~~~~~Lq~~~~d~~~-----~vk~Lre~i~~vd~~~~~~s~~Ile~~~~r~n~~kL~~kL~~i~~V~~~q~~v 342 (951)
T KOG2115|consen 268 DSFFHAMTSLHNLQKELRDTMS-----EVKELRENIKEVDAENVRKSIKILELALTRKNVEKLLQKLRLIATVHQAQSTV 342 (951)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 5788888899998888886321 14458888887765433322223333333333333333344445566666778
Q ss_pred HhhhhcCChHHHHHHHHHhhhhcc---CcchhhHHHHHHHHHHHHHHHHHHHH
Q 001404 331 RGSISKGEFDLAVREYKKAKSIAL---PSHVNILKRVLEEVEKVMQEFKAMLY 380 (1084)
Q Consensus 331 ~~~I~~gdYd~aV~dY~kAk~L~~---~~~v~vf~kV~~EVE~ii~~~r~~L~ 380 (1084)
+..++.+||..|++..+--..++. -..+..|+..|.+.-.....+-+.+-
T Consensus 343 q~ll~~~d~~~ALdlI~t~q~~L~g~eL~gl~sfrhL~~ql~el~~tI~~m~t 395 (951)
T KOG2115|consen 343 QLLLSTQDFVGALDLIKTIQELLKGSELLGLHSFRHLRSQLLELYKTIDKMLT 395 (951)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHhhhhhcCchhHHhhHHHHHHHHHHHHHHHH
Confidence 888999999999998887777655 24578899888877655444444433
No 27
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=51.46 E-value=99 Score=35.70 Aligned_cols=89 Identities=19% Similarity=0.317 Sum_probs=53.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhcc------------CcchhhHHHHHHHHH
Q 001404 302 ERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIAL------------PSHVNILKRVLEEVE 369 (1084)
Q Consensus 302 err~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~------------~~~v~vf~kV~~EVE 369 (1084)
+.+.++++|+.-= .+.++.++|..||..|.+|..|.- +..+.-+..-|++|+
T Consensus 76 e~~~~AE~LK~eG----------------N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce 139 (304)
T KOG0553|consen 76 EDKALAESLKNEG----------------NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCE 139 (304)
T ss_pred hHHHHHHHHHHHH----------------HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHH
Confidence 5777777775421 245788999999999999999752 233444556667777
Q ss_pred HHHH--HHHHHHHHhhcCCCCChhHHHHHHH---HHhcCCCC
Q 001404 370 KVMQ--EFKAMLYKSMEDPHIDLTNLENTVR---LLLELEPE 406 (1084)
Q Consensus 370 ~ii~--~~r~~L~~kL~~~~~s~ee~~~lI~---lLleL~~~ 406 (1084)
.-+. .--.+.|.||--.-....+.++.|+ .=|+|+|+
T Consensus 140 ~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~ 181 (304)
T KOG0553|consen 140 SALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPD 181 (304)
T ss_pred HHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCC
Confidence 6543 3445566666444333333333333 34566555
No 28
>KOG1945 consensus Protein phosphatase 1 binding protein spinophilin/neurabin II [Signal transduction mechanisms]
Probab=48.28 E-value=1.6e+02 Score=34.69 Aligned_cols=23 Identities=17% Similarity=-0.032 Sum_probs=15.7
Q ss_pred cccccccCCCCCCCCCCCCCccc
Q 001404 147 FSTLQSFPRGMECIDPLGLGIID 169 (1084)
Q Consensus 147 ~~~~~~~p~~~~~~DPLGl~~~~ 169 (1084)
+.+-...|..+-..+|||++.+-
T Consensus 209 r~n~d~dp~s~s~e~~l~~~~E~ 231 (377)
T KOG1945|consen 209 RMNDDGDPPSDSEEPPLGPSQEP 231 (377)
T ss_pred hhhccCCCcccccccCCcccccc
Confidence 33444566666677999998774
No 29
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=47.94 E-value=1.8e+02 Score=34.39 Aligned_cols=43 Identities=14% Similarity=0.235 Sum_probs=30.3
Q ss_pred HhhhhcCChHHHHHHHHHhhhhccC------------cchhhHHHHHHHHHHHHH
Q 001404 331 RGSISKGEFDLAVREYKKAKSIALP------------SHVNILKRVLEEVEKVMQ 373 (1084)
Q Consensus 331 ~~~I~~gdYd~aV~dY~kAk~L~~~------------~~v~vf~kV~~EVE~ii~ 373 (1084)
.+..++|.|++|+++|.++..+.-+ -.+..|.-.-.+|+..+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 3457899999999999998876542 234556655666766554
No 30
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=45.20 E-value=3.3e+02 Score=30.44 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 001404 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (1084)
Q Consensus 220 S~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~ 269 (1084)
|+.+++.+.+.+.++.....+.|..-|-+++..++..+..+++-+.+.-.
T Consensus 66 sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~~~~~ 115 (237)
T cd07657 66 SWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQEERQ 115 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999999999999999999999999999999999988866654
No 31
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=44.09 E-value=5.1e+02 Score=29.07 Aligned_cols=89 Identities=13% Similarity=0.204 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhhhhHHHhHHHHHHH-HHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhccCcchhhHHHH
Q 001404 286 MQGVSSQANRAFEPLFERQAQAEKI-RSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALPSHVNILKRV 364 (1084)
Q Consensus 286 L~~i~~~a~~i~~pLlerr~KadkL-r~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~~~v~vf~kV 364 (1084)
+..+....+.+....-....++.++ ..+-.++++-+.|...=..+...|. .++........-.......-+.+.
T Consensus 54 l~~L~~d~~~L~~k~~~~~~~~~~l~~~t~~t~~~a~~L~~~i~~l~~~i~-----~l~~~~~~l~~~~~~~~~~~l~~~ 128 (264)
T PF06008_consen 54 LESLEQDVENLQEKATKVSRKAQQLNNNTERTLQRAQDLEQFIQNLQDNIQ-----ELIEQVESLNENGDQLPSEDLQRA 128 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHhCcccCCCCHHHHHHH
Confidence 3333333333333333344444443 2344444555444444444444443 222222211111112345779999
Q ss_pred HHHHHHHHHHHHHHH
Q 001404 365 LEEVEKVMQEFKAML 379 (1084)
Q Consensus 365 ~~EVE~ii~~~r~~L 379 (1084)
..|++.++.+||..=
T Consensus 129 l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 129 LAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999998873
No 32
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=42.78 E-value=5e+02 Score=28.59 Aligned_cols=39 Identities=18% Similarity=0.157 Sum_probs=30.9
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhh
Q 001404 220 SSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKT 258 (1084)
Q Consensus 220 S~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akd 258 (1084)
++..++.....+...=.+....|...|++.+.+|..-..
T Consensus 61 a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~ 99 (236)
T cd07651 61 SLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYT 99 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367777888888888888888899999999988865543
No 33
>KOG2347 consensus Sec5 subunit of exocyst complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.74 E-value=75 Score=41.18 Aligned_cols=179 Identities=11% Similarity=0.081 Sum_probs=118.8
Q ss_pred CchhhcccCCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhc
Q 001404 192 DNSLREKLMYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIE 271 (1084)
Q Consensus 192 ~p~lr~~~disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e 271 (1084)
..++|..++-.+..|++..|..-.|..-+ .|..++..+.. ++...-.+..++.-|+.++.... -.+.++..++.+-
T Consensus 76 ~G~~r~~~~~~~~g~s~~~f~r~~~~qi~--~l~~s~~~~d~-~~~~~~~~~~~~~~~~t~l~~~~-~l~~~i~~~k~~~ 151 (934)
T KOG2347|consen 76 KGDIRVTTLSGGKGTSTVCFRRVNHEQIG--PLDESAVRVDE-QQDQRKVPGRLKGVALTSLQSEP-PLGECIEPLKLKI 151 (934)
T ss_pred CCceEEeeccCccccCchhhhhhhHhhhc--cchhhhhhccc-ccccccccccccccCCcccccCC-CcccccCchhhcc
Confidence 34556567777899999999999998777 88888887777 55566667777777888777766 4444444444321
Q ss_pred --------CCCCCCCchhHHhhHHHHHHHHHhhh--hhHHHhHHHH---HHHHHHHHHHHHHHHHhcCchhhHhhhhcCC
Q 001404 272 --------EDPEGSGTAHLFKLMQGVSSQANRAF--EPLFERQAQA---EKIRSVQGMLQRFRTLFNLPSTIRGSISKGE 338 (1084)
Q Consensus 272 --------~~~~~~~t~~L~~~L~~i~~~a~~i~--~pLlerr~Ka---dkLr~vl~~L~R~kfLFeLP~~L~~~I~~gd 338 (1084)
..+++. | ...-| ++++.+--+. +.|+..+ .-+|+-|+.|...+.++-+++
T Consensus 152 ~~d~~~lfp~~~~D----l----------~se~Fspkw~L~enH~~ts~edLk~~i---~~lK~~~n~~~~~~~~lvK~n 214 (934)
T KOG2347|consen 152 NEDNKTLFPITSVD----L----------RSEHFSPKWFLLENHQDTSFEDLKAGI---LNLKRDLNGRKEGSLQLVKDN 214 (934)
T ss_pred hhhhhhhccccccc----c----------ccccCChhHHHHhhhhhccHHHHHHHH---HHHHHhhcchhhhhHHHHhcc
Confidence 111110 1 11112 2333333333 4555544 556788999999999999999
Q ss_pred hHHHHHHHHHhhhhcc-------CcchhhHHHHHHHHHHHHHHHHHHHHHhhcCCCCChhH
Q 001404 339 FDLAVREYKKAKSIAL-------PSHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHIDLTN 392 (1084)
Q Consensus 339 Yd~aV~dY~kAk~L~~-------~~~v~vf~kV~~EVE~ii~~~r~~L~~kL~~~~~s~ee 392 (1084)
++.+|.+|...-.+-. +-+-....++|.-++... .....+|+.+..-.-..+.
T Consensus 215 ~~~fi~~~dtl~~i~~kLe~~e~~~~gs~t~~l~n~i~~~~-s~ad~iF~~vl~Rk~~ADs 274 (934)
T KOG2347|consen 215 FDSFISCKDTLDNIHQKLERGEEDPHGSGTTKLENCIKNST-SRADLIFEDVLERKDKADS 274 (934)
T ss_pred hhHHHHHHHHHHHHHHHHhccccCccchHHHHHHHHHHHhh-hHHHHHHHHHHhccccccc
Confidence 9999999998765421 234456667888888877 8888899888765433433
No 34
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=41.44 E-value=86 Score=31.50 Aligned_cols=57 Identities=9% Similarity=0.123 Sum_probs=42.4
Q ss_pred CCCCCCCCCCccchHHHHHHHHHHHHHHHH-hccchhhHHHHHHHHHHHHHHHHHHhh
Q 001404 852 VQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLF 908 (1084)
Q Consensus 852 idW~~~p~P~~VRpYvyE~Ll~LV~VHAEV-~t~a~~Ll~rVLs~Lve~laeelL~~f 908 (1084)
+-|-.-+.|+...+||-.+|..|-..+... ..+.+.....++..+++.+++.++..-
T Consensus 22 YR~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~~~~~~~~~~~v~~~v~~~y~~~~ 79 (125)
T PF12022_consen 22 YRMTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLSPEIIEEWLQKVITEVTERYYEIA 79 (125)
T ss_pred hhccCCCCCCCccHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468888999999999999999999999888 445565666666666665555444433
No 35
>PF11547 E3_UbLigase_EDD: E3 ubiquitin ligase EDD; InterPro: IPR024725 EDD, the ER ubiquitin ligase from the HECT ligases, contains an N-terminal ubiquitin-associated (UBA) domain which binds ubiquitin. Ubiquitin is recognised by helices alpha-1 and -3 in in the UBA domain. EDD is involved in DNA damage repair pathways and binds to mono-ubiquitinated proteins [].; GO: 0043130 ubiquitin binding; PDB: 2QHO_H.
Probab=40.41 E-value=37 Score=28.82 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=23.9
Q ss_pred CChHHHHHHHHHH----HHHHHHHHHhhhhcchh
Q 001404 996 VSPDDLIALAQQY----SSELLQAELERTRINTA 1025 (1084)
Q Consensus 996 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 1025 (1084)
.=||||+.-||.+ +++.+..||.||-+|+.
T Consensus 7 ~vPedlI~q~q~VLqgksR~vIirELqrTnLdVN 40 (53)
T PF11547_consen 7 QVPEDLINQAQVVLQGKSRNVIIRELQRTNLDVN 40 (53)
T ss_dssp GS-HHHHHHHHHHSTTS-HHHHHHHHHHTTT-HH
T ss_pred cCCHHHHHHHHHHHcCCcHHHHHHHHHHhcccHH
Confidence 4599999999987 68899999999998775
No 36
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.14 E-value=7.6e+02 Score=28.81 Aligned_cols=71 Identities=18% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhh--hhccCcchhhHHHHHHH---------HHHHHHHHHHHHHH
Q 001404 313 VQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAK--SIALPSHVNILKRVLEE---------VEKVMQEFKAMLYK 381 (1084)
Q Consensus 313 vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk--~L~~~~~v~vf~kV~~E---------VE~ii~~~r~~L~~ 381 (1084)
+..+++..=-.+..|-.+..||+-.-|=..+..|.... ..|...--..++++..+ +.+.|+.+|..++.
T Consensus 156 ~~~ml~~Li~~L~~~l~l~~~ik~v~~Lrrl~~~~e~~Lr~~fl~~r~~~l~~~l~~i~~~~~~~~lkr~iei~R~~~fd 235 (338)
T PF04124_consen 156 LQQMLSQLINQLRTPLKLPACIKTVGYLRRLPVLTESELRLKFLQSRDSWLQSVLEEIDKSDPYRYLKRYIEIYREHLFD 235 (338)
T ss_pred HHHHHHHHHHHHcCcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 34455555668899999999998877777776665443 12222222333333333 33455555555555
Q ss_pred hh
Q 001404 382 SM 383 (1084)
Q Consensus 382 kL 383 (1084)
.+
T Consensus 236 ii 237 (338)
T PF04124_consen 236 II 237 (338)
T ss_pred HH
Confidence 54
No 37
>COG2904 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.84 E-value=30 Score=34.85 Aligned_cols=73 Identities=29% Similarity=0.368 Sum_probs=40.3
Q ss_pred cccccCCCCCCCCCCCCCcc-------chhhhhhhcc-cCCCCCCCCCCC--CCchhhcccCCCCCCCCHHHHHHHhcCC
Q 001404 149 TLQSFPRGMECIDPLGLGII-------DNKTLRLITD-SSGSTPKSDRDN--VDNSLREKLMYFSDSFNAKLFLSRVHQN 218 (1084)
Q Consensus 149 ~~~~~p~~~~~~DPLGl~~~-------~~~~L~~~~~-~~~~~P~~~~~~--~~p~lr~~~disS~~FdP~~FLs~vH~~ 218 (1084)
-+|-+|+...- ||||++.. |...+=-+.= ...|.|...+.. +|-.. .-+|.|++| ++||...-+.
T Consensus 28 LL~pvpR~~nR-~~LGl~~~~lpf~G~DiW~~YElSwLn~~G~PqVaig~~~ip~dS--~NlIESKSF--KLYLNSfNqt 102 (137)
T COG2904 28 LLQPVPRSLNR-DPLGLTANNLPFHGADIWTLYELSWLNAKGLPQVAIGTVYIPADS--PNLIESKSF--KLYLNSFNQT 102 (137)
T ss_pred HhccCccccCc-cccccccCCCCccccchhhhhhhhhhccCCCceEEEEEEEecCCC--ccccccchh--hhhhhhcchH
Confidence 35789997665 99999755 1111111100 124566543332 22222 457899999 9999876532
Q ss_pred --CCHHHHHH
Q 001404 219 --TSSADLEA 226 (1084)
Q Consensus 219 --tS~~dL~~ 226 (1084)
+++++|.+
T Consensus 103 ~f~s~e~v~~ 112 (137)
T COG2904 103 KFASWEEVRQ 112 (137)
T ss_pred hhccHHHHHH
Confidence 34444444
No 38
>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]
Probab=35.49 E-value=5.3e+02 Score=31.90 Aligned_cols=68 Identities=18% Similarity=0.296 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHH--HHHHHhhcCCCCCh-hHHHHHHHHHhcCCCCCChHHHHHHHh---------HHHHHHHHHHHHHHH
Q 001404 365 LEEVEKVMQEFK--AMLYKSMEDPHIDL-TNLENTVRLLLELEPESDPVWHYLNVQ---------NHRIRGLFEKCTLDH 432 (1084)
Q Consensus 365 ~~EVE~ii~~~r--~~L~~kL~~~~~s~-ee~~~lI~lLleL~~~~dPiw~fL~sq---------~~~I~~~le~~~~~~ 432 (1084)
++=|+-+++.|- .+||..+.....+. -+.+++...|.+|+....--|+||.+- +.++..+|..|-..+
T Consensus 517 hHlc~~vVE~FpessDLYSEiGA~tRSAkVDf~qL~DNL~qlErrCKaSWe~L~~Iakhe~~p~l~~r~~~fl~~cA~RI 596 (817)
T KOG1925|consen 517 HHLCSLVVETFPESSDLYSEIGALTRSAKVDFEQLTDNLGQLERRCKASWESLRSIAKHELAPALRARLTHFLDQCARRI 596 (817)
T ss_pred HHHHHHHHHhCCcchhHHHHhHhhhhhhhccHHHHHHHHHHHHHHhhHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHH
Confidence 444555666653 35666664443332 256778888888988888899999873 455666666666543
No 39
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=34.51 E-value=3e+02 Score=29.52 Aligned_cols=85 Identities=14% Similarity=0.209 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhhhhHHHhHHH
Q 001404 227 GALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAFEPLFERQAQ 306 (1084)
Q Consensus 227 gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~~pLlerr~K 306 (1084)
.+..|..+|..+.+.+|.| ++|+..|-.+++...... .+..+.+.| +.+...+-+.+++
T Consensus 80 el~~ld~~i~~l~ek~q~l-----------~~t~s~veaEik~L~s~L---t~eemQe~i-------~~L~kev~~~~er 138 (201)
T KOG4603|consen 80 ELQVLDGKIVALTEKVQSL-----------QQTCSYVEAEIKELSSAL---TTEEMQEEI-------QELKKEVAGYRER 138 (201)
T ss_pred HHHHHhHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhc---ChHHHHHHH-------HHHHHHHHHHHHH
Confidence 4556777888888777766 457777777777542211 122233333 3344445566666
Q ss_pred HHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHh
Q 001404 307 AEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKA 349 (1084)
Q Consensus 307 adkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kA 349 (1084)
+.+++... ..|...|-++|-+.|.++
T Consensus 139 l~~~k~g~-----------------~~vtpedk~~v~~~y~~~ 164 (201)
T KOG4603|consen 139 LKNIKAGT-----------------NHVTPEDKEQVYREYQKY 164 (201)
T ss_pred HHHHHHhc-----------------ccCCHHHHHHHHHHHHHH
Confidence 66666654 234445555566666553
No 40
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=33.14 E-value=1.8e+02 Score=37.52 Aligned_cols=107 Identities=16% Similarity=0.211 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhh--hhhhHhh-hhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 001404 221 SADLEAGALALKTDLKGRTQQRKQLVKDN--FDCFVSC-KTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (1084)
Q Consensus 221 ~~dL~~gl~~L~reI~~~~~~LK~LV~eN--F~kFI~a-kdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (1084)
..||...+..|.++++.+.+.+..|..+. +-+|... ..-++.+...+..|+++ +.+|+++|..=+...-.+|
T Consensus 547 ~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr~~~~e~~~~~e~L~~aL~amqdk-----~~~LE~sLsaEtriKldLf 621 (697)
T PF09726_consen 547 RRQLESELKKLRRELKQKEEQIRELESELQELRKYEKESEKDTEVLMSALSAMQDK-----NQHLENSLSAETRIKLDLF 621 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHH
Confidence 46777788889999999999998888866 4444311 11234444444444322 3457777765445555699
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhh
Q 001404 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (1084)
Q Consensus 298 ~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I 334 (1084)
..|.+.|.+++-+... +.+|-+.|.+|-.+|.+-+
T Consensus 622 saLg~akrq~ei~~~~--~~~~d~ei~~lk~ki~~~~ 656 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQ--LRKKDKEIEELKAKIAQLL 656 (697)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 9999999888776554 4677788888887777654
No 41
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=32.77 E-value=7.5e+02 Score=27.76 Aligned_cols=51 Identities=8% Similarity=0.023 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhh
Q 001404 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKR 269 (1084)
Q Consensus 219 tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~ 269 (1084)
.++.+++.+.+.+.+......+++..-|-+++.+++.=+..+++-|.++..
T Consensus 65 ~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~~~~~ 115 (234)
T cd07686 65 KSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYIGVHQ 115 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999999999999999999999999999999998888743
No 42
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=31.56 E-value=37 Score=27.36 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=18.0
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 001404 333 SISKGEFDLAVREYKKAKSIA 353 (1084)
Q Consensus 333 ~I~~gdYd~aV~dY~kAk~L~ 353 (1084)
++..++|++|+.||.+|-.+.
T Consensus 11 sle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 11 SLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred HHHhccHHHHHHHHHHHHHHH
Confidence 577899999999999987764
No 43
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=31.14 E-value=5e+02 Score=30.07 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=60.9
Q ss_pred CCCCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCc
Q 001404 200 MYFSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGT 279 (1084)
Q Consensus 200 disS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t 279 (1084)
.|-+..=+.+.||.++|+ ++...|..+...-+.++.+|+.||. +|-++++++..++...++....++. -|
T Consensus 238 nIe~~~~~~~~~Ldklh~-----eit~~LEkI~SREK~lNnqL~~l~q----~fr~a~~~lse~~e~y~q~~~gv~~-rT 307 (384)
T KOG0972|consen 238 NIEQKVGNVGPYLDKLHK-----EITKALEKIASREKSLNNQLASLMQ----KFRRATDTLSELREKYKQASVGVSS-RT 307 (384)
T ss_pred HHHHhhcchhHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhcccHHH-HH
Confidence 345555677999999995 5666788888888888888888874 7999999999998888876544432 35
Q ss_pred hhHHhhHHHHHHH
Q 001404 280 AHLFKLMQGVSSQ 292 (1084)
Q Consensus 280 ~~L~~~L~~i~~~ 292 (1084)
..|.+.|.++...
T Consensus 308 ~~L~eVm~e~E~~ 320 (384)
T KOG0972|consen 308 ETLDEVMDEIEQL 320 (384)
T ss_pred HHHHHHHHHHHHH
Confidence 6676666665433
No 44
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=29.80 E-value=7.9e+02 Score=27.06 Aligned_cols=42 Identities=5% Similarity=-0.070 Sum_probs=32.3
Q ss_pred CCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhH
Q 001404 219 TSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTI 260 (1084)
Q Consensus 219 tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTI 260 (1084)
.++..+......+.+.-....+.+..-|...+..|+......
T Consensus 65 ~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~ 106 (251)
T cd07653 65 KAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQE 106 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346677777778888888888888888888899988866443
No 45
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=29.48 E-value=1.1e+03 Score=30.36 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhh
Q 001404 221 SADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLK 268 (1084)
Q Consensus 221 ~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk 268 (1084)
++.+...-..|...-.++...++.++++=...|...+.+-..++..+.
T Consensus 49 ~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v 96 (611)
T KOG2398|consen 49 WLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGV 96 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 445555556666666666777777777777777777777666666554
No 46
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=26.79 E-value=8.6e+02 Score=31.00 Aligned_cols=163 Identities=11% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHhHHHH-HhhhhccCCCCCCCCC----CCCcc
Q 001404 789 SSELYNKYKDIWLQSREKDQEGTDIQDLVMSFSGLEEKVLEQYTFAKANLIRTA-ATTFLLDSGVQWGAAP----AVKGV 863 (1084)
Q Consensus 789 ip~L~~~fe~~f~~~~~~~~~~~~ir~~~~~l~qLD~rLfe~Y~~~Ka~~L~~~-I~~gil~~gidW~~~p----~P~~V 863 (1084)
+-+|...|..-|.. +.-....+-+++..|..+=.+.|.++++.+...|... + .+.| ||.-+
T Consensus 336 i~~LL~fY~~~~~k---~i~~~s~L~~tl~~L~~~a~~~f~~~l~~~~~~l~~~~~-----------~~~~~DL~PP~~l 401 (618)
T PF06419_consen 336 IANLLSFYQMTFSK---LIGEDSSLIETLKELQDLAQKKFFSSLRDHVAKLLRSAP-----------EPPPADLSPPEWL 401 (618)
T ss_pred HHHHHHHHHHHHHH---HcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC-----------CCCCCCCCCCHHH
Q ss_pred chHHHHHHHHHHHHHHHHhccch-----hhHHHHHHHHHHHHHHHHHHhhhhhccccc-cccCcchhHHHHhhHHHHHHh
Q 001404 864 RDVAVELLHTLVAVHAEVFAGAK-----PLLDKTLGILVEGLIDTFLSLFDENQSNNL-KSLDANGFCQLMLELDYFETI 937 (1084)
Q Consensus 864 RpYvyE~Ll~LV~VHAEV~t~a~-----~Ll~rVLs~Lve~laeelL~~f~~~~~~~v-~~fs~~G~lQAtLDIefl~qt 937 (1084)
+.|+.. |..|+.+|..-..-.. ..+.+||...++-+.+.+...-.....+.- .=|-.|-+ .+|+.+
T Consensus 402 ~d~l~~-L~~il~~~~~s~~~~~~~~~~~~~~~Il~~~idpll~~c~~~a~~L~~~~~~~if~iNCl-------~~i~s~ 473 (618)
T PF06419_consen 402 IDFLSL-LREILDVYDSSLSPDDDRENDNDFKPILDEPIDPLLQMCQKSASPLAPKDDRAIFMINCL-------DLIQST 473 (618)
T ss_pred HHHHHH-HHHHHHHhhcccCCccchhhhhHHHHHHHHHhHHHHHHHHHHhhccCChhhhHHHHHHhH-------HHHHHH
Q ss_pred hccc--CChhHHHHHHHHHHHHHHHHhhHHHhhhcCCC
Q 001404 938 LNPY--FTHDARESLKNLQGVLLEKATVSVAEAVENPG 973 (1084)
Q Consensus 938 Ls~Y--~T~~A~~~~~~~~~~~~~~~~~~v~~~~~~~~ 973 (1084)
|++| ++.+...+=.+|-+.+=.-+-+.++..++.-|
T Consensus 474 L~~~~~~~~~~e~L~~~id~~~~~Lv~~Q~~~lL~~sG 511 (618)
T PF06419_consen 474 LSPFEFTSERVEELQDQIDAHVDTLVEEQASFLLERSG 511 (618)
T ss_pred ccChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
No 47
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=26.51 E-value=49 Score=42.25 Aligned_cols=9 Identities=0% Similarity=0.040 Sum_probs=4.3
Q ss_pred CCHHHHHHH
Q 001404 219 TSSADLEAG 227 (1084)
Q Consensus 219 tS~~dL~~g 227 (1084)
.++++++..
T Consensus 713 mpyeeik~~ 721 (1102)
T KOG1924|consen 713 MPYEEIKNV 721 (1102)
T ss_pred CCHHHHHHH
Confidence 445555443
No 48
>KOG3771 consensus Amphiphysin [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.29 E-value=7.2e+02 Score=30.57 Aligned_cols=32 Identities=19% Similarity=0.429 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHhcchhHHHHHHHhhcCccccc
Q 001404 496 RYIRRLTAVLIHHIPAFWKVALSVFSGKFAKS 527 (1084)
Q Consensus 496 ~fv~~L~~vll~~lp~FWklaqs~~~Gk~~k~ 527 (1084)
+--+.+..-|+.+||.||.+-.+|+...|+..
T Consensus 171 ~~fE~lN~~L~eELP~L~~sRv~f~vp~Fqsl 202 (460)
T KOG3771|consen 171 QVFEELNNELLEELPALYSSRVGFFVPTFQSL 202 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhcchHHHH
Confidence 33456777799999999999999999998754
No 49
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=25.72 E-value=72 Score=30.15 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=36.3
Q ss_pred CCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhh
Q 001404 204 DSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNF 250 (1084)
Q Consensus 204 ~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF 250 (1084)
..|+-..|-.- +++++.|...|++|++..+.+.+.|+.|+.+|=
T Consensus 21 ~e~~~~E~~~i---ns~LD~Lns~LD~LE~rnD~l~~~L~~LLesnr 64 (83)
T PF03670_consen 21 DEFDEEEYAAI---NSMLDQLNSCLDHLEQRNDHLHAQLQELLESNR 64 (83)
T ss_pred ccccHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34555554432 678999999999999999999999999999984
No 50
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=24.86 E-value=1.4e+02 Score=26.31 Aligned_cols=18 Identities=28% Similarity=0.458 Sum_probs=16.1
Q ss_pred cCChHHHHHHHHHhhhhc
Q 001404 336 KGEFDLAVREYKKAKSIA 353 (1084)
Q Consensus 336 ~gdYd~aV~dY~kAk~L~ 353 (1084)
.|+|+.|++.|..|-.++
T Consensus 18 ~g~~~~A~~~Y~~ai~~l 35 (69)
T PF04212_consen 18 AGNYEEALELYKEAIEYL 35 (69)
T ss_dssp TTSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 799999999999998754
No 51
>KOG4514 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.26 E-value=4.7e+02 Score=28.30 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHHHHhhhHHHH
Q 001404 220 SSADLEAGALALKTDLKGRTQQRK 243 (1084)
Q Consensus 220 S~~dL~~gl~~L~reI~~~~~~LK 243 (1084)
+.+.|++++-.+-++|..++.+--
T Consensus 140 ~vD~llr~lgg~lh~is~lt~~~v 163 (222)
T KOG4514|consen 140 SVDNLLRNLGGLLHSISSLTADNV 163 (222)
T ss_pred HHHHHHHHhhhHHHHHHHhhhhHH
Confidence 345555555555555555444433
No 52
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.10 E-value=1.8e+02 Score=35.10 Aligned_cols=59 Identities=19% Similarity=0.259 Sum_probs=46.9
Q ss_pred CCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhh
Q 001404 202 FSDSFNAKLFLSRVHQNTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRI 270 (1084)
Q Consensus 202 sS~~FdP~~FLs~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~ 270 (1084)
+=+-|+|+-|.+.++.--.++-|...+..+. .+...+=++.|-..+| |++++|.+|+++
T Consensus 281 DlE~F~pk~FvsrlLGmGDi~glvek~~ev~--~~d~~el~~kl~~gkF--------tlrd~y~Qfq~i 339 (483)
T KOG0780|consen 281 DLEPFDPKPFVSRLLGMGDIEGLVEKVQEVG--KDDAKELVEKLKQGKF--------TLRDFYDQFQNI 339 (483)
T ss_pred ccCCCChHHHHHHHhccccHHHHHHHHHHHh--hhhHHHHHHHHHhCCc--------cHHHHHHHHHHH
Confidence 3578999999999999999999999988887 4444455555555555 899999999975
No 53
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=22.20 E-value=1.9e+02 Score=26.68 Aligned_cols=48 Identities=17% Similarity=0.266 Sum_probs=34.1
Q ss_pred hcCChHHHHHHHHHhhhhcc-----Cc---chhhHHHHHHHHHHHHHHHHHHHHHh
Q 001404 335 SKGEFDLAVREYKKAKSIAL-----PS---HVNILKRVLEEVEKVMQEFKAMLYKS 382 (1084)
Q Consensus 335 ~~gdYd~aV~dY~kAk~L~~-----~~---~v~vf~kV~~EVE~ii~~~r~~L~~k 382 (1084)
+.|+|+.|+..|..|-.++. +. -...++.-..+.-..++.++..|-+.
T Consensus 18 ~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 18 QEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred HhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46999999999999987553 12 23556666677777777777776443
No 54
>PF02809 UIM: Ubiquitin interaction motif; InterPro: IPR003903 The Ubiquitin Interacting Motif (UIM), or 'LALAL-motif', is a stretch of about 20 amino acid residues, which was first described in the 26S proteasome subunit PSD4/RPN-10 that is known to recognise ubiquitin [,]. In addition, the UIM is found, often in tandem or triplet arrays, in a variety of proteins either involved in ubiquitination and ubiquitin metabolism, or known to interact with ubiquitin-like modifiers. Among the UIM proteins are two different subgroups of the UBP (ubiquitin carboxy-terminal hydrolase) family of deubiquitinating enzymes, one F-box protein, one family of HECT-containing ubiquitin-ligases (E3s) from plants, and several proteins containing ubiquitin-associated UBA and/or UBX domains []. In most of these proteins, the UIM occurs in multiple copies and in association with other domains such as UBA (IPR015940 from INTERPRO), UBX (IPR001012 from INTERPRO), ENTH, EH (IPR000261 from INTERPRO), VHS (IPR002014 from INTERPRO), SH3 (IPR001452 from INTERPRO), HECT (IPR000569 from INTERPRO), VWFA (IPR002035 from INTERPRO), EF-hand calcium-binding, WD-40 (IPR001680 from INTERPRO), F-box (IPR001810 from INTERPRO), LIM (IPR001781 from INTERPRO), protein kinase (IPR000719 from INTERPRO), ankyrin (IPR002110 from INTERPRO), PX (IPR001683 from INTERPRO), phosphatidylinositol 3- and 4-kinase (IPR000403 from INTERPRO), C2 (IPR000008 from INTERPRO), OTU (IPR003323 from INTERPRO), dnaJ (IPR001623 from INTERPRO), RING-finger (IPR001841 from INTERPRO) or FYVE-finger (IPR017455 from INTERPRO). UIMs have been shown to bind ubiquitin and to serve as a specific targeting signal important for monoubiquitination. Thus, UIMs may have several functions in ubiquitin metabolism each of which may require different numbers of UIMs [, , ]. The UIM is unlikely to form an independent folding domain. Instead, based on the spacing of the conserved residues, the motif probably forms a short alpha-helix that can be embedded into different protein folds []. Some proteins known to contain an UIM are listed below: Eukaryotic PSD4/RPN-10/S5, a multi-ubiquitin binding subunit of the 26S proteasome. Vertebrate Machado-Joseph disease protein 1 (Ataxin-3), which acts as a histone-binding protein that regulates transcription; defects in Ataxin-3 cause the neurodegenerative disorder Machado-Joseph disease (MJD). Vertebrate epsin and epsin2. Vertebrate hepatocyte growth factor-regulated tyrosine kinase substrate (HRS). Mammalian epidermal growth factor receptor substrate 15 (EPS15), which is involved in cell growth regulation. Mammalian epidermal growth factor receptor substrate EPS15R. Drosophila melanogaster (Fruit fly) liquid facets (lqf), an epsin. Yeast VPS27 vacuolar sorting protein, which is required for membrane traffic to the vacuole. ; PDB: 2KDE_A 2KDF_A 1YX6_A 1YX5_A 1YX4_A 1P9C_A 1UEL_B 1P9D_S 2KLZ_A.
Probab=22.03 E-value=67 Score=21.92 Aligned_cols=12 Identities=67% Similarity=0.662 Sum_probs=9.9
Q ss_pred ccHHHHHHHHHH
Q 001404 5 SDEDELLQMALK 16 (1084)
Q Consensus 5 ~~~~~~~~~~~~ 16 (1084)
++||+-||+||+
T Consensus 1 ~~Ed~~L~~Al~ 12 (18)
T PF02809_consen 1 MDEDEDLQRALE 12 (18)
T ss_dssp SHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 368889999986
No 55
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.86 E-value=71 Score=31.22 Aligned_cols=40 Identities=18% Similarity=0.431 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHhhhHhHHHHHhhhhccCCCCCCCCCC
Q 001404 818 MSFSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPA 859 (1084)
Q Consensus 818 ~~l~qLD~rLfe~Y~~~Ka~~L~~~I~~gil~~gidW~~~p~ 859 (1084)
..+..++..+= .-+.+...|.+++..=|+.+|+||...|.
T Consensus 58 ~~l~~~~~~lk--~~r~~~~v~k~v~q~lI~gSgVdWa~D~~ 97 (106)
T PF05837_consen 58 EKLEKLEKELK--KSRQRWRVMKNVFQALIVGSGVDWAEDPK 97 (106)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCCcccCHH
Confidence 34555555542 34567778888888889999999998864
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=21.85 E-value=1.1e+03 Score=29.51 Aligned_cols=82 Identities=17% Similarity=0.198 Sum_probs=47.7
Q ss_pred hhhhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhhhcCChHHHHHHHHHhhhhc--cCcchhhHHHHHHHHHHHHH
Q 001404 296 AFEPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIA--LPSHVNILKRVLEEVEKVMQ 373 (1084)
Q Consensus 296 i~~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~--~~~~v~vf~kV~~EVE~ii~ 373 (1084)
+...-.+.+.++.+++..+.-++|.-.--+||+.=...+. .|..+-+...+.+.-+ ++=++..+.+-+.++...+.
T Consensus 409 Lrk~E~eAr~kL~~~~~~L~~ikr~l~k~~lpgip~~y~~--~~~~~~~~i~~l~~~L~~g~VNm~ai~~e~~e~~~~~~ 486 (569)
T PRK04778 409 LRKDELEAREKLERYRNKLHEIKRYLEKSNLPGLPEDYLE--MFFEVSDEIEALAEELEEKPINMEAVNRLLEEATEDVE 486 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHH
Confidence 4444555666777777777777777666667764444432 2333333333333222 23456667777777777777
Q ss_pred HHHHHH
Q 001404 374 EFKAML 379 (1084)
Q Consensus 374 ~~r~~L 379 (1084)
.+..+.
T Consensus 487 ~L~~q~ 492 (569)
T PRK04778 487 TLEEET 492 (569)
T ss_pred HHHHHH
Confidence 777664
No 57
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=21.83 E-value=5.2e+02 Score=26.48 Aligned_cols=67 Identities=18% Similarity=0.324 Sum_probs=50.6
Q ss_pred CCCCHHHHHH-----HhcCCCCHHHHHHHHHHHHHHHHhhhHHHHHHH------HhhhhhhHhhhhhHHHHHHHhhhh
Q 001404 204 DSFNAKLFLS-----RVHQNTSSADLEAGALALKTDLKGRTQQRKQLV------KDNFDCFVSCKTTIDDIESKLKRI 270 (1084)
Q Consensus 204 ~~FdP~~FLs-----~vH~~tS~~dL~~gl~~L~reI~~~~~~LK~LV------~eNF~kFI~akdTId~m~~~mk~~ 270 (1084)
+.+|+.-|+. +.|=+...+.+...-+.|...|++-+..+-.+. ..+|.+|..+-..|+.|...+...
T Consensus 22 eklds~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~ 99 (131)
T PF10158_consen 22 EKLDSRPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRC 99 (131)
T ss_pred HccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577777776 667677888888888999888887776654433 478888888888888888777653
No 58
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=21.52 E-value=1.1e+03 Score=28.28 Aligned_cols=21 Identities=19% Similarity=0.551 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHhcCch
Q 001404 308 EKIRSVQGMLQRFRTLFNLPS 328 (1084)
Q Consensus 308 dkLr~vl~~L~R~kfLFeLP~ 328 (1084)
.-|..+.++++-|+-+=++|.
T Consensus 138 ~~L~av~~L~~~F~~yksi~~ 158 (383)
T PF04100_consen 138 SLLQAVKELLEHFKPYKSIPQ 158 (383)
T ss_pred HHHHHHHHHHHHHHcccCcHH
Confidence 345566666666666666663
No 59
>smart00726 UIM Ubiquitin-interacting motif. Present in proteasome subunit S5a and other ubiquitin-associated proteins.
Probab=21.33 E-value=68 Score=23.87 Aligned_cols=12 Identities=67% Similarity=0.747 Sum_probs=10.2
Q ss_pred cHHHHHHHHHHH
Q 001404 6 DEDELLQMALKE 17 (1084)
Q Consensus 6 ~~~~~~~~~~~~ 17 (1084)
+|||.||+||++
T Consensus 1 ~EDe~Lq~Ai~l 12 (26)
T smart00726 1 DEDEDLQLALEL 12 (26)
T ss_pred ChHHHHHHHHHH
Confidence 578899999986
No 60
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=20.81 E-value=68 Score=39.55 Aligned_cols=64 Identities=22% Similarity=0.087 Sum_probs=30.6
Q ss_pred cCCCCCCCCCCcccccccceeeecccCCccccchhhh---hhhcccCC--ccCCCCCCCCC-CCCccccc
Q 001404 47 QKGGRSQGKKYEEEEESEVEMLSISSGDEEVSRDRGL---AAKNRARG--RRDDDGTWDGD-EPNCWKRV 110 (1084)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~-~p~~w~~v 110 (1084)
+|=+..+-.-.++||++|-+|....+..|....++.. ..++.++. .-+||.+|+.. -|++-.+|
T Consensus 447 ~ryA~s~l~~d~~ee~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~dDle~~~~~~~~t~~~~ 516 (518)
T KOG2568|consen 447 QRYAFSPLSDDDEEEEEEESLDLLESLTEGAKSRADKRKSLGKADPNKALNFEDDLEEVEEEIPSTSADV 516 (518)
T ss_pred cccccccccCCcchhhhhhhhhhcccccccCccccccccccccccccchhchhhhhhcccccCccccccC
Confidence 3444333333333444556666666655543333221 11112221 22578888544 78876554
No 61
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.58 E-value=1.2e+03 Score=25.98 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=31.1
Q ss_pred CChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Q 001404 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKSM 383 (1084)
Q Consensus 337 gdYd~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~kL 383 (1084)
.+|..++..|.+++.-+......+|.....-=+..+.-||..||+--
T Consensus 168 ~e~~~~ve~y~~~r~~we~~m~~~~~~~Q~~Ee~Rl~~lk~~L~~y~ 214 (233)
T cd07649 168 DDLMRCVDLYNQAQSKWFEEMVTTSLELERLEVERIEMIRQHLCQYT 214 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777778888777655544556666665555667777777776543
No 62
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.53 E-value=1.1e+03 Score=26.19 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=26.4
Q ss_pred CChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q 001404 337 GEFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKS 382 (1084)
Q Consensus 337 gdYd~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~k 382 (1084)
.+|..+|..|+..+.-+...-..+|.++..==+..|+.||..||.-
T Consensus 164 ~~Y~~~v~~~~~~~~~~~~~m~~~~~~~Q~lEe~Ri~~~k~~l~~y 209 (261)
T cd07648 164 DEYKALVEKYNNIRADFETKMTDSCKRFQEIEESHLRQMKEFLASY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777776665443333444444444455666666666543
No 63
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=20.40 E-value=1e+03 Score=25.03 Aligned_cols=108 Identities=16% Similarity=0.222 Sum_probs=62.3
Q ss_pred CCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhhhHhhhhhHHHHHHHhhhhcCCCCCCCchhHHhhHHHHHHHHHhhh
Q 001404 218 NTSSADLEAGALALKTDLKGRTQQRKQLVKDNFDCFVSCKTTIDDIESKLKRIEEDPEGSGTAHLFKLMQGVSSQANRAF 297 (1084)
Q Consensus 218 ~tS~~dL~~gl~~L~reI~~~~~~LK~LV~eNF~kFI~akdTId~m~~~mk~~e~~~~~~~t~~L~~~L~~i~~~a~~i~ 297 (1084)
--.|++|...-..|...|+.++.+|..|= ..+.+-|.+. -.++.++....... ..+...|......-..+-
T Consensus 41 ~iDFeqLkien~~l~~kIeERn~eL~~Lk-~~~~~~v~~L---~h~keKl~~~~~~~-----~~l~~~l~~~~~~~~~~r 111 (177)
T PF13870_consen 41 LIDFEQLKIENQQLNEKIEERNKELLKLK-KKIGKTVQIL---THVKEKLHFLSEEL-----ERLKQELKDREEELAKLR 111 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Confidence 44588899999999999999999998774 3333333322 22222222211110 113333333333333444
Q ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHhcCchhhHhhh
Q 001404 298 EPLFERQAQAEKIRSVQGMLQRFRTLFNLPSTIRGSI 334 (1084)
Q Consensus 298 ~pLlerr~KadkLr~vl~~L~R~kfLFeLP~~L~~~I 334 (1084)
..+...+..-++++....-|+....++.-|..|..++
T Consensus 112 ~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~ 148 (177)
T PF13870_consen 112 EELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYD 148 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Confidence 4455555566677777767777777888888776544
No 64
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=20.36 E-value=83 Score=40.36 Aligned_cols=11 Identities=36% Similarity=0.863 Sum_probs=6.8
Q ss_pred ccccccHHHHH
Q 001404 106 CWKRVDEAELA 116 (1084)
Q Consensus 106 ~w~~v~~~~l~ 116 (1084)
-|-+|+++-|+
T Consensus 644 FWvkv~Edk~e 654 (1102)
T KOG1924|consen 644 FWVKVNEDKLE 654 (1102)
T ss_pred eeeecchhhcc
Confidence 47777776553
No 65
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=20.34 E-value=1.2e+03 Score=26.06 Aligned_cols=45 Identities=11% Similarity=0.158 Sum_probs=30.9
Q ss_pred ChHHHHHHHHHhhhhccCcchhhHHHHHHHHHHHHHHHHHHHHHh
Q 001404 338 EFDLAVREYKKAKSIALPSHVNILKRVLEEVEKVMQEFKAMLYKS 382 (1084)
Q Consensus 338 dYd~aV~dY~kAk~L~~~~~v~vf~kV~~EVE~ii~~~r~~L~~k 382 (1084)
+|...+..|.+++.-+......+|.++..-=+..+.-||..||.-
T Consensus 165 ~y~~~~~ky~~~~~~~~~~m~~~~~~~Q~~Ee~Ri~~lk~~L~~~ 209 (261)
T cd07674 165 SLRGSVEKYNRARGDFEQKMLESAQKFQDIEETHLRHMKLLIKGY 209 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 588889999888766554444556665555556777777777655
No 66
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=20.32 E-value=83 Score=23.24 Aligned_cols=21 Identities=19% Similarity=0.452 Sum_probs=16.8
Q ss_pred hhhcCChHHHHHHHHHhhhhc
Q 001404 333 SISKGEFDLAVREYKKAKSIA 353 (1084)
Q Consensus 333 ~I~~gdYd~aV~dY~kAk~L~ 353 (1084)
+...|+|+.|+..|++|..+.
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 11 YFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHhCCchHHHHHHHHHHHHC
Confidence 467899999999999997764
Done!