Query 001404
Match_columns 1084
No_of_seqs 221 out of 336
Neff 5.5
Searched_HMMs 29240
Date Tue Mar 26 15:47:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001404.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_708-712//hhsearch_pdb/001404hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a2f_X Exocyst complex compone 1.0 1 1 50.1 11.3 105 824-940 186-291 (325)
2 2d2s_A Exocyst complex compone 1.0 1 1 34.5 20.1 201 316-612 11-218 (235)
3 3fhn_A Protein transport prote 1.0 1 1 32.5 13.8 177 812-1002 503-694 (706)
4 2fji_1 Exocyst complex compone 1.0 1 1 25.9 27.2 336 618-1013 7-370 (399)
5 3n1e_A Vacuolar protein sortin 1.0 1 1 16.8 9.9 82 853-941 42-126 (141)
6 1jfi_A Transcription regulator 1.0 1 1 16.5 1.5 22 885-906 34-55 (98)
7 2rpa_A Katanin P60 ATPase-cont 1.0 1 1 14.4 4.5 43 331-373 20-66 (78)
8 3hr0_A COG4; conserved oligome 1.0 1 1 14.2 15.2 141 820-971 82-226 (263)
9 2yxh_A MAZG-related protein; T 1.0 1 1 14.1 -0.0 20 357-376 24-43 (116)
10 2nqb_D Histone H2B; nucleosome 1.0 1 1 14.0 3.7 36 590-632 37-72 (123)
No 1
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=50.08 Aligned_cols=105 Identities=14% Similarity=0.150 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 9999989787566759998862100489877889988753248999999999999977215-223399999999999999
Q 001404 824 EEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEVFAG-AKPLLDKTLGILVEGLID 902 (1084)
Q Consensus 824 D~rLfe~Yv~~Ka~~L~~~I~~gil~~gidW~~~p~P~~VRpYvyE~Ll~LV~VHAEV~si-a~~Ll~rVLs~Lve~lae 902 (1084)
+.+||+. +..|.|-+.. ...+||.+..+|++.++|+.+.+..|=.+=+ +++. .+.....++-.-...+++
T Consensus 186 e~~I~~~-v~~KIDdfl~-------la~yDW~~~~~~~~ps~yi~dli~fL~~~f~-sl~~LP~~v~~~~~~~a~~his~ 256 (325)
T 2a2f_X 186 EKQVGLR-ICSKIDEFFE-------LSAYDWLLVEPPGIASAFITDMISYLKSTFD-SFAFKLPHIAQAACRRTFEHIAE 256 (325)
T ss_dssp HHHHHHH-HHHHHHHHHT-------TCCTTCC----CCSCCHHHHHHHHHHHHHHH-TTTTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHH-------HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999-9989999987-------6036887888999856899999999999999-98739999999999999999999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 99985312004455546910158898349999994133
Q 001404 903 TFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNP 940 (1084)
Q Consensus 903 elL~~f~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~ 940 (1084)
.++..+-.. .|++|+++|..|..+||.|+++-...
T Consensus 257 ~l~~~Ll~~---~vk~in~~av~~~~~Dv~~lE~fa~~ 291 (325)
T 2a2f_X 257 KIYSIMYDE---DVKQISTGALTQINLDLMQCEFFAAS 291 (325)
T ss_dssp HHHHHHTC---------CCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCC---CHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 999986486---11432999999899999999999872
No 2
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=1.00 E-value=1 Score=34.52 Aligned_cols=201 Identities=13% Similarity=0.130 Sum_probs=135.5
Q ss_pred HHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 9999789763954347521038837999999996321067-------641569999999999999999999996149999
Q 001404 316 MLQRFRTLFNLPSTIRGSISKGEFDLAVREYKKAKSIALP-------SHVNILKRVLEEVEKVMQEFKAMLYKSMEDPHI 388 (1084)
Q Consensus 316 ~L~R~kfLFeLP~~L~~~I~~gdYd~aV~dY~kAk~L~~~-------~~v~vf~kV~~EVE~ii~~~k~~L~~kL~~~~~ 388 (1084)
.-+..+.+-+.|..|.-+|...+|+.||.--.+++.++.. .+.....-+-.-++.....+...|-..+.. +.
T Consensus 11 ~~~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~-~~ 89 (235)
T 2d2s_A 11 TAQRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS-SN 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT-CS
T ss_pred CCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC
T ss_conf 10047888716298899999976999999999999998728444565536789999999999999999999999870-58
Q ss_pred CHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 95679999999861799997598999976999999998989989999999768887853214799999862104767654
Q 001404 389 DLTNLENTVRLLLELEPESDPVWHYLNVQNHRIRGLFEKCTLDHEARMETLHNELHERAMSDARWLQIQQDLNQSSGADY 468 (1084)
Q Consensus 389 s~~e~~~lI~lLleL~~~~dPiw~~L~sq~~~I~~~le~~~~~~~~k~e~l~~kl~~~~~s~~~~~~lq~~~~~~~~v~~ 468 (1084)
...+..+.|..|..||-.+.-+-.||.++..+|...+..+. . .
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~-------------------------------~---~--- 132 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIG-------------------------------S---V--- 132 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC------------------------------------C---
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHC-------------------------------C---C---
T ss_conf 77999999999988798169999999999999999988721-------------------------------4---6---
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 33358888877899788835678999999999999997102468998778506821455667866665655741232102
Q 001404 469 SVTCGNIQPIDSLPVELSGEEVDAFRGRYIRRLTAVLIHHIPAFWKVALSVFSGKFAKSSQVSSESNLNASGNKAEEKVG 548 (1084)
Q Consensus 469 ~l~~~~~~~~~~~~~~~~~~ev~~l~~~fv~~L~~vil~~lp~FWklaqs~~~Gk~~k~~~~~~~~~s~s~~~~~~~~l~ 548 (1084)
. + ...|+..|+.+.-..+-+=-+--+..|.+. + +.
T Consensus 133 ----g-----d--------------~~~Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~-------~------~~--------- 167 (235)
T 2d2s_A 133 ----D-----N--------------PTNYLTQLAVIRFQTIKKTVEDFQDIFKEL-------G------AK--------- 167 (235)
T ss_dssp ----C-----S--------------HHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-------C------HH---------
T ss_pred ----C-----C--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------C------CC---------
T ss_conf ----8-----7--------------899999999999999999999999984789-------8------43---------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5755546389999999999997654421002688667412289999999999999862001379
Q 001404 549 EGKYSIHSLDEVAGMIRNTISVYEIKVHNTFNDLEDSNILRSYMRDAIEEISKACQAFEAKESA 612 (1084)
Q Consensus 549 ~~k~~~h~~~e~~~mi~e~i~~y~~~i~~~F~~l~~~n~~~~yL~~~l~~I~~~~~~L~~~~~~ 612 (1084)
-...|+.|..+-+..|+..+.--.+. + .. . |- +|+..+..-|..|...|-.
T Consensus 168 -------~~S~lV~Wa~~eve~f~~l~~rqv~~-~-~~-l--~~-ecv~i~~~~~~~L~~vGLd 218 (235)
T 2d2s_A 168 -------ISSILVDWCSDEVDNHFKLIDKQLLN-D-EM-L--SP-GSIKSSRKQIDGLKAVGLD 218 (235)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHTTC------C--CH-HHHHHHHHHHHGGGGGTCC
T ss_pred -------CCCHHHHHHHHHHHHHHHHHHHHCCC-C-CC-H--HH-HHHHHHHHHHHHHHHCCCC
T ss_conf -------13389999999999999999988357-8-65-9--99-9999999999999876987
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=32.48 Aligned_cols=177 Identities=10% Similarity=0.095 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC--------CCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 089999989989999-9989787566759998862100489877889988--------7532489999999999999772
Q 001404 812 DIQDLVMSFSGLEEK-VLEQYTFAKANLIRTAATTFLLDSGVQWGAAPAV--------KGVRDVAVELLHTLVAVHAEVF 882 (1084)
Q Consensus 812 ~ir~~~~~l~qLD~r-Lfe~Yv~~Ka~~L~~~I~~gil~~gidW~~~p~P--------~~VRpYvyE~Ll~LV~VHAEV~ 882 (1084)
--+++...+..+-.+ +.+.++..-..-+.....+|.-.+ .|..-+.+ -.+.+-.-+.|..|.--=+.+.
T Consensus 503 IFDetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s--~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~ 580 (706)
T 3fhn_A 503 LFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKIS--TWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLD 580 (706)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCC--GGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC--CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0899999999999888999999999999999998774816--68566787766655568898889999999999999999
Q ss_pred CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 15--2233999999999999999998531200445554691015889834999999413368936899999999999999
Q 001404 883 AG--AKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEK 960 (1084)
Q Consensus 883 si--a~~Ll~rVLs~Lve~laeelL~~f~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~~~~~~~~~ 960 (1084)
.. ++.+..+|-..++..+..-+.+..=. ..+|+.+|+.|...|++++-.++..+... +...|+.+.+.+.=-
T Consensus 581 ~~lL~~~~f~~IwR~ia~~Ld~yL~e~IL~-----~nkFS~~Ga~Qf~~D~~~L~~v~~lp~~~-~~~~~~~L~E~l~LL 654 (706)
T 3fhn_A 581 SMDIPLAISLKVKNELLNVIVNYFTESILK-----LNKFNQNGLNQFLHDFKSLSSILSLPSHA-TNYKCMSLHELVKIL 654 (706)
T ss_dssp TSCCCHHHHHHHHHHHHHHHHHHHHHTTTT-----TSCBCHHHHHHHHHHHHHHHTTSCCCTTC-CCHHHHHHHHHHHHH
T ss_pred HCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCHHHHHHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHHC
T ss_conf 813777899999999999999999999986-----08648888999999999999985688841-456779999999981
Q ss_pred HHHHHHHHHCCCCCCCCC----CCCCCHHHHHHHCCCCCCCHHHHH
Q ss_conf 766787631299999999----899811226632078888967999
Q 001404 961 ATVSVAEAVENPGHHRRP----TRGSEDALADERQQGMTVSPDDLI 1002 (1084)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 1002 (1084)
.+.- ++...+-.. ..|-.+.+-+.. +--..++++++
T Consensus 655 ~L~~-----d~~~~~f~~~~y~~~~~~~~l~~~~-~i~~l~~~~i~ 694 (706)
T 3fhn_A 655 KLKY-----DPNNQQFLNPEYIKTGNFTSLKEAY-SIKYLKDTKIQ 694 (706)
T ss_dssp GGGG-----CGGGTTTTSHHHHHHCCCSHHHHHH-TCSSSCHHHHH
T ss_pred CCCC-----CCCHHHHHHHHHHCCCCHHHHHHHC-CCCCCCHHHHH
T ss_conf 7988-----7422067789887017748899864-86468878999
No 4
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=25.90 Aligned_cols=336 Identities=9% Similarity=0.098 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999999999999999999999995210033456764-4642223889897655259999999999999999874202345
Q 001404 618 MVLRTLQAEITKIYIGRLCSWMQGSTDGISKDETWI-PVSILERNKSPYTISYLPLAFRSIMKSSMDQISLMIHSLRSEA 696 (1084)
Q Consensus 618 ~~Lr~L~~~~~~~~v~~lca~~~~dae~i~~lEdW~-~~~~~e~~~~~~~iT~LP~~Fe~~i~~~lqki~~~~~~~~~E~ 696 (1084)
+.++.|..+-..+.+..+-.|+.+..+. ..++|. +...++.+.+-.=.|.+|..+-.++-..++....+.
T Consensus 7 ~~~~~L~~~Y~~~i~~~~~eW~~nil~~--E~~~w~~r~~~P~~d~~g~~~t~~~~dvfqml~eql~~a~~~~------- 77 (399)
T 2fji_1 7 KEKETLFKDYLNLIVVKMTEWIGNLEKA--EFDVFLERSTPPHSDSDGLLFLDGTKTCFQMFTQQVEVAAGTN------- 77 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCSCCEECTTSCEECHHHHHHHHHHHHHHHHHHHTT-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHCCCCCCCCCCCCEECCCHHHHHHHHHHHHHHHHHCC-------
T ss_conf 4599999999999999999999999999--9999884689998699988528864799999999999998479-------
Q ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 55146899-89999999999999999999976998864431--014--77553343568789988887678999988967
Q 001404 697 TKSEDMYA-QLLEIQESVRLSFLNRFLDFAGHLEHIASELA--QNK--SNKESQHLQNGYSSDPCTESLSDIPGSVVDPH 771 (1084)
Q Consensus 697 ~~~~di~~-~l~q~~~~Vr~~F~~~~~~f~~~Le~l~~~~~--~~~--~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 771 (1084)
..++.. .+..+...+ ..|+..| ...++...-... ... .+.++ + . ++. .....-
T Consensus 78 --~~~l~~~v~~~~~~~L-~~f~~~~---~~~l~~~~~~~~~~~~~~~~~~~~-~----~-~~~----------~~~~~~ 135 (399)
T 2fji_1 78 --QAKILVGVVERFSDLL-TKRQKNW---ISKISEEIKKQINYNHKYDIDPES-I----T-PED----------ECPGGL 135 (399)
T ss_dssp --CHHHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHHHHTTTTGGGS-C----C-TTT----------CCCSCH
T ss_pred --CCCCHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHCCCCCCCCCCCC-C----C-CCC----------CCCCCH
T ss_conf --7300999999999999-9999999---999999999875201000124222-4----7-654----------565418
Q ss_pred CEEEHEE-CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Q ss_conf 3641100-2316788753799999999610245344334-32089999989989999998---97875667599988621
Q 001404 772 QRLLIVI-SNIGYCKDELSSELYNKYKDIWLQSREKDQE-GTDIQDLVMSFSGLEEKVLE---QYTFAKANLIRTAATTF 846 (1084)
Q Consensus 772 ~RLLltL-SN~~~lr~~vip~L~~~fe~~f~~~~~~~~~-~~~ir~~~~~l~qLD~rLfe---~Yv~~Ka~~L~~~I~~g 846 (1084)
+--|+.+ .||..+. .++..|...|+...... ..+. ...+.++.+.|..+-..-.+ ..+.....|.-..
T Consensus 136 ~e~liA~~Nn~~~~~-e~~~~l~~~~~~~~~~~--~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~---- 208 (399)
T 2fji_1 136 VEYLIAVSNDQMKAA-DYAVAISSKYGKLVSKV--YEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQE---- 208 (399)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHTTSCHH--HHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTT----
T ss_pred HHHHHHHHCCHHHHH-HHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_conf 786566554488899-99999999999862677--88888999999999999999999999999999988999998----
Q ss_pred HCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC---CC
Q ss_conf 00489877889988753248999999999999977-215223399999999999999999853120044555469---10
Q 001404 847 LLDSGVQWGAAPAVKGVRDVAVELLHTLVAVHAEV-FAGAKPLLDKTLGILVEGLIDTFLSLFDENQSNNLKSLD---AN 922 (1084)
Q Consensus 847 il~~gidW~~~p~P~~VRpYvyE~Ll~LV~VHAEV-~sia~~Ll~rVLs~Lve~laeelL~~f~~~~~~~v~~fs---~~ 922 (1084)
++ .-.|...+ ++..++.++----... ....|++...++..+.+.+.-+.++++.. . .+|. ..
T Consensus 209 lf--t~~W~~~~-------~v~~i~~ti~dy~~d~~~~L~~~~~~~l~~~~~~~~v~~Yl~~l~~-~----~~~~~~~~~ 274 (399)
T 2fji_1 209 IF--SKTWYMGS-------QAQQIADTLDEYLLDIKPQMNSVLFVNFIDNVIGETIIKFLTALSF-E----HSFKNKNNK 274 (399)
T ss_dssp TT--SGGGTTCC-------HHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHGGGG-C----CCCCCGGGH
T ss_pred HC--CCHHCCCC-------HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHC-C----CCCCCHHHH
T ss_conf 57--70300876-------7999999999999999998086999999999999999999999846-7----777840599
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHH------HHH---HHHHHHHHHHHHHHHHHHHHHCCC----CCCCCCCCCCCHHHHHH
Q ss_conf 15889834999999413368936------899---999999999999766787631299----99999989981122663
Q 001404 923 GFCQLMLELDYFETILNPYFTHD------ARE---SLKNLQGVLLEKATVSVAEAVENP----GHHRRPTRGSEDALADE 989 (1084)
Q Consensus 923 G~lQAtLDIefl~qtLs~Y~T~~------A~~---~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 989 (1084)
|..|...|++.+.+.+..|.+.. ... .+..+.+ |- +++|+.+.+.- ...-..+..-.-+.-.=
T Consensus 275 ~~~~l~~D~~~l~~~f~~~~~~~~~~~~~v~~~~~~l~~l~~-L~---~d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~ 350 (399)
T 2fji_1 275 FLEAMKRDFEIFYQLFVKVLDGNESKDTLITQNFTVMEFFMD-LS---CEPIDSILDIWQKYLEVYWDSRIDLLVGILKC 350 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHH-HH---HSCGGGHHHHHHHHHTTCTTCCSHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH-HC---CCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 999999999999999998556532025778779999999997-36---89577799999999986899999999999982
Q ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 207888896799999999879999
Q 001404 990 RQQGMTVSPDDLIALAQQYSSELL 1013 (1084)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~~~~~~ 1013 (1084)
|+. ++.++...+.+.| .+++
T Consensus 351 R~D---~~~~~~k~ll~~~-~~~~ 370 (399)
T 2fji_1 351 RKD---VSSSERKKIVQQA-TEML 370 (399)
T ss_dssp CTT---CCHHHHHHHHHHH-HHHH
T ss_pred CCC---CCHHHHHHHHHHH-HHHH
T ss_conf 548---9989999999999-9998
No 5
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=1.00 E-value=1 Score=16.82 Aligned_cols=82 Identities=6% Similarity=0.085 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHH-HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH--HHH
Q ss_conf 77889988753248999999999999977215223-399999999999999999853120044555469101588--983
Q 001404 853 QWGAAPAVKGVRDVAVELLHTLVAVHAEVFAGAKP-LLDKTLGILVEGLIDTFLSLFDENQSNNLKSLDANGFCQ--LML 929 (1084)
Q Consensus 853 dW~~~p~P~~VRpYvyE~Ll~LV~VHAEV~sia~~-Ll~rVLs~Lve~laeelL~~f~~~~~~~v~~fs~~G~lQ--AtL 929 (1084)
+|...+ | .++||+-.+.=.++--|-=++.+-|+ -+.-|+..+....-+.+-++|.. +.--+.+|--. .+-
T Consensus 42 ~Wd~k~-p-vpS~~m~tl~Ke~~kLH~~Ls~~LP~~~v~~Im~~Vf~~fk~~l~~~~~~-----~~i~~~~G~q~g~v~~ 114 (141)
T 3n1e_A 42 KYEVKA-P-VPSPCFRNICKQMTKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSH-----LNVINDGGPQNGLVTA 114 (141)
T ss_dssp TCCCCS-S-SSCHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH-----TTCCSSSSHHHHHHHH
T ss_pred HHCCCC-C-CCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH-----CCCCCCCCCCCHHHHH
T ss_conf 725589-9-89989999999999999998832999999999999999999999999998-----6887877630027899
Q ss_pred HHHHHHHHHCCC
Q ss_conf 499999941336
Q 001404 930 ELDYFETILNPY 941 (1084)
Q Consensus 930 DIefl~qtLs~Y 941 (1084)
|++|+...|..-
T Consensus 115 Dv~ff~~~L~~L 126 (141)
T 3n1e_A 115 DVAFYTGNLQAL 126 (141)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHCCC
T ss_conf 999999986246
No 6
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=1.00 E-value=1 Score=16.51 Aligned_cols=22 Identities=14% Similarity=0.375 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2233999999999999999998
Q 001404 885 AKPLLDKTLGILVEGLIDTFLS 906 (1084)
Q Consensus 885 a~~Ll~rVLs~Lve~laeelL~ 906 (1084)
|+-++.+++.++++.+++...+
T Consensus 34 A~v~la~a~E~Fi~el~~~A~~ 55 (98)
T 1jfi_A 34 VPVIISRALELFLESLLKKACQ 55 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999999999999999999999
No 7
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=14.36 Aligned_cols=43 Identities=16% Similarity=0.150 Sum_probs=25.7
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHCC----CCCHHHHHHHHHHHHHHHH
Q ss_conf 752103883799999999632106----7641569999999999999
Q 001404 331 RGSISKGEFDLAVREYKKAKSIAL----PSHVNILKRVLEEVEKVMQ 373 (1084)
Q Consensus 331 ~~~I~~gdYd~aV~dY~kAk~L~~----~~~v~vf~kV~~EVE~ii~ 373 (1084)
|++.-.|+||.++-+|..+..... .-.-+..+.=|..+-+.+.
T Consensus 20 Re~Al~GnYdta~~yY~g~~~qI~k~l~~~~d~~~r~kW~~~~~ei~ 66 (78)
T 2rpa_A 20 REYALLGNYDSAMVYYQGVLDQMNKYLYSVKDTHLRQKWQQVWQEIN 66 (78)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 99999659099999999999999999986689898876999999999
No 8
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=14.19 Aligned_cols=141 Identities=10% Similarity=-0.003 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC----CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 998999999897875667599988621004898778899----8875324899999999999997721522339999999
Q 001404 820 FSGLEEKVLEQYTFAKANLIRTAATTFLLDSGVQWGAAP----AVKGVRDVAVELLHTLVAVHAEVFAGAKPLLDKTLGI 895 (1084)
Q Consensus 820 l~qLD~rLfe~Yv~~Ka~~L~~~I~~gil~~gidW~~~p----~P~~VRpYvyE~Ll~LV~VHAEV~sia~~Ll~rVLs~ 895 (1084)
+..==..||.+-++||..|+...... ++....- ....=-|++......+ .+-+.-..+.|++.....
T Consensus 82 l~~gi~~Lf~~~ikprLr~~l~~f~~------~~y~l~eee~~~~e~~d~~~~~F~~~w---~~ll~p~k~~Lt~~~y~~ 152 (263)
T 3hr0_A 82 LQEGLTELNSTAIKPQVQPWINSFFS------VSHNIEEEEFNDYEANDPWVQQFILNL---EQQMAEFKASLSPVIYDS 152 (263)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHGGGG------SCBSCCHHHHHHHHHSCCSHHHHHHHH---HHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC------CCCCCCHHHHHHHHCCCHHHHHHHHHH---HHHHHHHHHHCCHHHHHH
T ss_conf 99999999999769889999998725------335677767755101668999999999---999999998718579999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999853120044555469101588983499999941336893689999999999999976678763129
Q 001404 896 LVEGLIDTFLSLFDENQSNNLKSLDANGFCQLMLELDYFETILNPYFTHDARESLKNLQGVLLEKATVSVAEAVEN 971 (1084)
Q Consensus 896 Lve~laeelL~~f~~~~~~~v~~fs~~G~lQAtLDIefl~qtLs~Y~T~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 971 (1084)
|+..+++.+.+.+...-.+ .+|+.-|++|.-=|+..|-..++.-.+-..++.|..+.-...=--+|++.|+.|-
T Consensus 153 Ll~~~~~~la~~lE~~i~~--~~fn~lGal~LdrDvr~li~~~~~~~~~~lRekF~RL~QI~~lLnle~~eev~d~ 226 (263)
T 3hr0_A 153 LTGLMTSLVAVELEKVVLK--STFNRLGGLQFDKELRSLIAYLTTVTTWTIRDKFARLSQMATILNLERVTEILDY 226 (263)
T ss_dssp HHHHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHHHHHHHHHHHTTSCTTHHHHTHHHHHHHHHHTCSSGGGGGGT
T ss_pred HHHHHHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9999999999999999982--7707055899999999999999704661166899999999999847976899987
No 9
>2yxh_A MAZG-related protein; TM0360, LEFT-handed superhelix fold, structural genomics; 2.00A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=14.11 Aligned_cols=20 Identities=25% Similarity=0.398 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHHHHHH
Q ss_conf 41569999999999999999
Q 001404 357 HVNILKRVLEEVEKVMQEFK 376 (1084)
Q Consensus 357 ~v~vf~kV~~EVE~ii~~~k 376 (1084)
...++.++-.|+...+..+.
T Consensus 24 ~~~l~~~l~EE~~El~eai~ 43 (116)
T 2yxh_A 24 IETLLEALASEIEEVAEAVK 43 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999998
No 10
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=1.00 E-value=1 Score=14.05 Aligned_cols=36 Identities=8% Similarity=0.253 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 8999999999999986200137994799999999999999999
Q 001404 590 SYMRDAIEEISKACQAFEAKESAPPVAVMVLRTLQAEITKIYI 632 (1084)
Q Consensus 590 ~yL~~~l~~I~~~~~~L~~~~~~P~~~~~~Lr~L~~~~~~~~v 632 (1084)
.|+.++|..|. +-..+.+.+.+.+.+++.++.++..
T Consensus 37 ~YIyKVLKQVh-------pd~gISskAm~ImnSfvnDiferIA 72 (123)
T 2nqb_D 37 IYIYTVLKQVH-------PDTGISSKAMSIMNSFVNDIFERIA 72 (123)
T ss_dssp HHHHHHHHHHC-------TTCEECHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-------CCCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999998738-------9997689999999999999999999
Done!