Your job contains 1 sequence.
>001405
MGKQKQQVISRFFAPKSNQTTASSSASSPRPPQQTPPPKIAATVSFSPAKRKVVSSLFPP
KTPKKPKLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFG
EDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGP
GKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDG
FDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAY
AGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEG
IMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNS
NGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSES
VGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAIL
YAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQG
DLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIEL
PANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYY
AEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNF
VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYT
RMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYL
LEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVV
PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQE
AQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQFLKHARSIAKEL
IIR
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 001405
(1083 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2131829 - symbol:MSH3 "AT4G25540" species:3702... 2984 0. 3
UNIPROTKB|Q0J8X3 - symbol:Os04g0682900 "Os04g0682900 prot... 1854 2.5e-191 1
UNIPROTKB|P20585 - symbol:MSH3 "DNA mismatch repair prote... 835 6.5e-151 2
UNIPROTKB|F1P9S9 - symbol:MSH3 "Uncharacterized protein" ... 827 9.5e-150 2
UNIPROTKB|F1MLH1 - symbol:MSH3 "Uncharacterized protein" ... 826 2.5e-149 2
UNIPROTKB|F1LQM8 - symbol:Msh3 "Protein Msh3" species:101... 840 3.2e-149 2
MGI|MGI:109519 - symbol:Msh3 "mutS homolog 3 (E. coli)" s... 829 1.2e-147 2
ASPGD|ASPL0000012704 - symbol:AN3749 species:162425 "Emer... 737 5.2e-134 3
UNIPROTKB|Q5B6T1 - symbol:msh3 "DNA mismatch repair prote... 737 5.2e-134 3
UNIPROTKB|F1RF09 - symbol:MSH3 "Uncharacterized protein" ... 695 7.2e-131 3
UNIPROTKB|A4R0R0 - symbol:MSH3 "DNA mismatch repair prote... 741 3.0e-129 2
DICTYBASE|DDB_G0281683 - symbol:msh3 "mutS homolog" speci... 911 6.2e-126 2
ZFIN|ZDB-GENE-060526-307 - symbol:msh3 "mutS homolog 3 (E... 670 5.6e-123 2
UNIPROTKB|Q7SD11 - symbol:msh-3 "DNA mismatch repair prot... 576 2.3e-118 4
POMBASE|SPAC8F11.03 - symbol:msh3 "MutS protein homolog 3... 663 1.7e-113 3
UNIPROTKB|E1C1F8 - symbol:MSH3 "Uncharacterized protein" ... 837 4.2e-96 2
SGD|S000000688 - symbol:MSH3 "Mismatch repair protein" sp... 612 7.1e-89 3
UNIPROTKB|Q759V4 - symbol:MSH3 "DNA mismatch repair prote... 596 3.1e-85 3
CGD|CAL0000288 - symbol:orf19.3608 species:5476 "Candida ... 639 1.3e-77 2
POMBASE|SPCC285.16c - symbol:msh6 "MutS protein homolog" ... 599 4.1e-72 3
UNIPROTKB|Q8TTB4 - symbol:mutS "DNA mismatch repair prote... 529 2.5e-68 3
UNIPROTKB|P74926 - symbol:mutS "DNA mismatch repair prote... 513 9.4e-68 4
UNIPROTKB|Q7S4J6 - symbol:NCU08135 "DNA mismatch repair p... 532 3.2e-65 3
TIGR_CMR|CBU_1056 - symbol:CBU_1056 "DNA mismatch repair ... 490 8.4e-64 4
DICTYBASE|DDB_G0268614 - symbol:msh6 "mutS homolog" speci... 534 3.1e-63 5
UNIPROTKB|G4NEZ2 - symbol:MGG_00704 "DNA mismatch repair ... 512 3.4e-63 3
TIGR_CMR|CHY_1397 - symbol:CHY_1397 "DNA mismatch repair ... 521 2.2e-62 3
UNIPROTKB|Q8A334 - symbol:mutS "DNA mismatch repair prote... 553 5.6e-62 3
ASPGD|ASPL0000041666 - symbol:mshA species:162425 "Emeric... 504 2.0e-61 3
UNIPROTKB|Q5BCM2 - symbol:AN1708.2 "Protein required for ... 504 2.0e-61 3
UNIPROTKB|Q7NLT8 - symbol:mutS "DNA mismatch repair prote... 514 2.2e-61 4
UNIPROTKB|Q89VX1 - symbol:mutS "DNA mismatch repair prote... 463 1.1e-60 4
RGD|2322311 - symbol:Msh6 "mutS homolog 6 (E. coli)" spec... 622 2.7e-60 2
MGI|MGI:1343961 - symbol:Msh6 "mutS homolog 6 (E. coli)" ... 618 3.0e-60 2
TIGR_CMR|VC_0535 - symbol:VC_0535 "DNA mismatch repair pr... 498 6.1e-60 3
UNIPROTKB|E1B9Q4 - symbol:MSH6 "Uncharacterized protein" ... 613 8.9e-60 2
UNIPROTKB|F5H2F9 - symbol:MSH6 "DNA mismatch repair prote... 604 2.4e-59 2
UNIPROTKB|F1PM27 - symbol:MSH6 "Uncharacterized protein" ... 605 6.2e-59 2
UNIPROTKB|B4DF41 - symbol:MSH6 "DNA mismatch repair prote... 604 7.0e-59 2
TIGR_CMR|SO_3431 - symbol:SO_3431 "DNA mismatch repair pr... 491 7.9e-59 3
UNIPROTKB|P52701 - symbol:MSH6 "DNA mismatch repair prote... 604 1.2e-58 2
CGD|CAL0006305 - symbol:MSH6 species:5476 "Candida albica... 502 1.3e-58 3
UNIPROTKB|A9WFZ9 - symbol:mutS "DNA mismatch repair prote... 534 2.4e-58 3
UNIPROTKB|J9P5H1 - symbol:MSH6 "Uncharacterized protein" ... 596 7.2e-58 2
TIGR_CMR|APH_0857 - symbol:APH_0857 "DNA mismatch repair ... 465 9.5e-58 4
UNIPROTKB|E1BYJ2 - symbol:MSH6 "Uncharacterized protein" ... 597 1.4e-57 2
UNIPROTKB|E1BWV7 - symbol:MSH6 "Uncharacterized protein" ... 597 1.5e-57 2
UNIPROTKB|P23909 - symbol:mutS species:83333 "Escherichia... 505 1.7e-57 3
UNIPROTKB|P61667 - symbol:mutS "DNA mismatch repair prote... 484 7.4e-57 5
TIGR_CMR|GSU_1822 - symbol:GSU_1822 "DNA mismatch repair ... 484 7.4e-57 5
UNIPROTKB|Q3KKQ0 - symbol:mutS "DNA mismatch repair prote... 510 7.9e-57 3
SGD|S000002504 - symbol:MSH6 "Protein required for mismat... 451 8.8e-57 3
UNIPROTKB|I3LHZ9 - symbol:LOC100739477 "Uncharacterized p... 612 2.6e-56 1
UNIPROTKB|A6V1G8 - symbol:mutS "DNA mismatch repair prote... 504 4.1e-56 3
UNIPROTKB|Q74ZT2 - symbol:AGOS_AGR116W "AGR116Wp" species... 450 1.4e-55 3
TIGR_CMR|DET_1219 - symbol:DET_1219 "DNA mismatch repair ... 528 4.3e-55 2
UNIPROTKB|P49849 - symbol:mutS "DNA mismatch repair prote... 484 5.8e-55 3
TIGR_CMR|NSE_0335 - symbol:NSE_0335 "DNA mismatch repair ... 506 1.9e-54 2
TAIR|locus:2132233 - symbol:MSH6 "AT4G02070" species:3702... 587 1.5e-53 1
UNIPROTKB|Q5VR41 - symbol:OJ1174_D05.15 "Os01g0180600 pro... 423 9.4e-53 3
UNIPROTKB|Q7RKG5 - symbol:PY02936 "G/T mismatch binding p... 442 2.9e-52 4
RGD|1563954 - symbol:Msh3 "mutS homolog 3 (E. coli)" spec... 549 3.7e-52 1
UNIPROTKB|O66652 - symbol:mutS "DNA mismatch repair prote... 481 4.2e-52 4
TIGR_CMR|ECH_0824 - symbol:ECH_0824 "DNA mismatch repair ... 428 5.9e-52 3
TIGR_CMR|SPO_0011 - symbol:SPO_0011 "DNA mismatch repair ... 459 2.1e-51 4
TAIR|locus:1005716529 - symbol:MSH7 "AT3G24495" species:3... 407 6.6e-51 4
TIGR_CMR|BA_3905 - symbol:BA_3905 "DNA mismatch repair pr... 461 8.0e-51 3
UNIPROTKB|F1LXQ9 - symbol:Msh3 "Protein Msh3" species:101... 532 2.6e-50 1
ZFIN|ZDB-GENE-020905-3 - symbol:msh6 "mutS homolog 6 (E. ... 557 3.1e-50 1
WB|WBGene00003422 - symbol:msh-6 species:6239 "Caenorhabd... 497 5.0e-49 2
UNIPROTKB|Q9N3T8 - symbol:msh-6 "Protein MSH-6" species:6... 497 5.0e-49 2
POMBASE|SPBC19G7.01c - symbol:msh2 "MutS protein homolog ... 490 5.4e-49 2
UNIPROTKB|Q23K54 - symbol:TTHERM_00194810 "MutS domain II... 434 4.1e-48 4
FB|FBgn0036486 - symbol:Msh6 "Msh6" species:7227 "Drosoph... 487 1.4e-47 2
TAIR|locus:2095097 - symbol:MSH2 "AT3G18524" species:3702... 464 1.9e-47 2
UNIPROTKB|F1NV33 - symbol:MSH2 "Uncharacterized protein" ... 479 6.2e-47 3
UNIPROTKB|F1NFH4 - symbol:MSH2 "Uncharacterized protein" ... 479 6.6e-47 3
SGD|S000005450 - symbol:MSH2 "Protein that forms heterodi... 491 3.9e-46 3
UNIPROTKB|Q7RQK0 - symbol:PY01096 "MutS homolog 2-related... 464 6.0e-46 2
UNIPROTKB|O13396 - symbol:msh-2 "DNA mismatch repair prot... 473 7.6e-46 2
UNIPROTKB|F1P6X2 - symbol:MSH4 "Uncharacterized protein" ... 450 1.2e-45 2
UNIPROTKB|E2RJA9 - symbol:MSH4 "Uncharacterized protein" ... 450 3.6e-45 2
UNIPROTKB|F1P4E2 - symbol:MSH4 "Uncharacterized protein" ... 447 4.3e-45 2
ASPGD|ASPL0000073909 - symbol:AN10621 species:162425 "Eme... 468 5.0e-45 3
UNIPROTKB|E1BK76 - symbol:MSH4 "Uncharacterized protein" ... 443 6.2e-45 2
UNIPROTKB|Q8F496 - symbol:mutS "DNA mismatch repair prote... 437 1.1e-44 2
POMBASE|SPAC13F5.01c - symbol:msh1 "mitochondrial MutS pr... 487 1.4e-44 2
UNIPROTKB|I3L5Z8 - symbol:MSH4 "Uncharacterized protein" ... 438 1.9e-44 2
UNIPROTKB|O15457 - symbol:MSH4 "MutS protein homolog 4" s... 442 2.9e-44 2
UNIPROTKB|Q752H0 - symbol:AFR603C "AFR603Cp" species:2848... 476 3.1e-44 2
UNIPROTKB|F1S9R2 - symbol:MSH4 "Uncharacterized protein" ... 436 3.9e-44 2
FB|FBgn0015546 - symbol:spel1 "spellchecker1" species:722... 466 4.6e-44 2
UNIPROTKB|Q5B374 - symbol:AN5006.2 "Putative uncharacteri... 468 1.6e-43 3
RGD|1309190 - symbol:Msh4 "mutS homolog 4 (E. coli)" spec... 430 1.7e-43 2
CGD|CAL0001526 - symbol:MSH2 species:5476 "Candida albica... 460 2.7e-43 3
ZFIN|ZDB-GENE-040426-2932 - symbol:msh2 "mutS homolog 2 (... 443 4.1e-43 2
DICTYBASE|DDB_G0275999 - symbol:msh1 "mutS homolog" speci... 440 6.9e-43 2
UNIPROTKB|Q7R8N0 - symbol:PY07191 "DNA mismatch repair pr... 461 1.2e-42 1
MGI|MGI:101816 - symbol:Msh2 "mutS homolog 2 (E. coli)" s... 443 8.5e-42 3
UNIPROTKB|F1PM37 - symbol:MSH2 "Uncharacterized protein" ... 438 9.4e-42 3
WARNING: Descriptions of 86 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2131829 [details] [associations]
symbol:MSH3 "AT4G25540" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IBA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006200 "ATP catabolic process" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic
recombination" evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0030983 "mismatched
DNA binding" evidence=IDA] [GO:0007126 "meiosis" evidence=RCA]
[GO:0007129 "synapsis" evidence=RCA] [GO:0009410 "response to
xenobiotic stimulus" evidence=RCA] [GO:0048522 "positive regulation
of cellular process" evidence=RCA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003684 EMBL:AL022197 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032300 GO:GO:0000404
EMBL:AJ007791 IPI:IPI00524241 PIR:T05793 PIR:T51613
RefSeq:NP_194284.2 UniGene:At.506 ProteinModelPortal:O65607
SMR:O65607 STRING:O65607 PaxDb:O65607 PRIDE:O65607
EnsemblPlants:AT4G25540.1 GeneID:828659 KEGG:ath:AT4G25540
TAIR:At4g25540 HOGENOM:HOG000029776 InParanoid:O65607 KO:K08736
OMA:KRTKSIY PhylomeDB:O65607 ProtClustDB:CLSN2680081
Genevestigator:O65607 GermOnline:AT4G25540 Uniprot:O65607
Length = 1081
Score = 2984 (1055.5 bits), Expect = 0., Sum P(3) = 0.
Identities = 605/939 (64%), Positives = 718/939 (76%)
Query: 77 PTPSS---QTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY 133
P+P +T+ ++KYTPLEQQVVELK+KYPDV+LM+EVGY++RFFGEDAE+AA+VLGIY
Sbjct: 89 PSPEEYVPETSSSRKYTPLEQQVVELKSKYPDVVLMVEVGYRYRFFGEDAEIAARVLGIY 148
Query: 134 AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSAL 193
AH+DHNFMTAS+PTFRLN HVRRLVNAG+K+GVVKQTETAAIK+HG + GPF RGLSAL
Sbjct: 149 AHMDHNFMTASVPTFRLNFHVRRLVNAGYKIGVVKQTETAAIKSHGANRTGPFFRGLSAL 208
Query: 194 YTKATLXXXXXXXXX---XXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDG----FDVRLG 246
YTKATL SN+LVCVVD+ ++++ G G FDVR+G
Sbjct: 209 YTKATLEAAEDISGGCGGEEGFGSQSNFLVCVVDE-----RVKSETLGCGIEMSFDVRVG 263
Query: 247 VVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASN 306
VV VEISTG+VVY EFND F+RSG GQPLS+QTEK L+A+AGP SN
Sbjct: 264 VVGVEISTGEVVYEEFNDNFMRSGLEAVILSLSPAELLLGQPLSQQTEKFLVAHAGPTSN 323
Query: 307 VRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD 366
VRVE AS DCF G A+ EV+SL E + L ++++ ++ E+G + IMNMP
Sbjct: 324 VRVERASLDCFSNGNAVDEVISLCEKISAGNLEDDKEMKLEAAEKGMSCLTVHTIMNMPH 383
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYG 426
L VQALALT HLKQFG ERI+ GASFRSLS + EMTLSANTLQQLEV++NNS+GSE G
Sbjct: 384 LTVQALALTFCHLKQFGFERILYQGASFRSLSSNTEMTLSANTLQQLEVVKNNSDGSESG 443
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDE 486
+L H MNHTLT+YGSRLLR WVTHPLCDRNLISARLDAVSEI+ MGS+ +S+ + E
Sbjct: 444 SLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLISARLDAVSEISACMGSHSSSQLSSELVE 503
Query: 487 KNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQL 546
+ S+ IV P+FY +LSSVLT++ RS DIQRGITRIFHRTA +EFIAVM+AIL AGKQ+
Sbjct: 504 EGSERAIVSPEFYLVLSSVLTAMSRSSDIQRGITRIFHRTAKATEFIAVMEAILLAGKQI 563
Query: 547 QQLHI--DGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLN 604
Q+L I D E R + S T+ S LL++LI SSP V+ A KLLS +NKEAA +GDLL+
Sbjct: 564 QRLGIKQDSEMRS-MQSATVRSTLLRKLISVISSPVVVDNAGKLLSALNKEAAVRGDLLD 622
Query: 605 LMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF 664
++I S+ QF E+A AR+AV +E+LDS I RK+L +RNLEF+ VSGITHLIELP +
Sbjct: 623 ILITSSDQFPELAEARQAVLVIREKLDSSIASFRKKLAIRNLEFLQVSGITHLIELPVDS 682
Query: 665 KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
KVP+NW KVNSTKKTIRYH PE++ LD+LALA E L IV RA+WDSFLK F YY +F
Sbjct: 683 KVPMNWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVNRASWDSFLKSFSRYYTDFK 742
Query: 725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPND 784
SRNKN+VRP FVDD EPV+I+I SGRHPVL+TIL DNFVPND
Sbjct: 743 AAVQALAALDCLHSLSTLSRNKNYVRPEFVDDCEPVEINIQSGRHPVLETILQDNFVPND 802
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
T LHAE EYCQIITGPNMGGKSCYIRQVALI IMAQVGSFVPAS A+LHVLDG++TRMGA
Sbjct: 803 TILHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFVPASFAKLHVLDGVFTRMGA 862
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
SDSIQ GRSTFLEEL+EAS+I+R C+++SLVI+DELGRGTSTHDGVAIAYATL +LL K
Sbjct: 863 SDSIQHGRSTFLEELSEASHIIRTCSSRSLVILDELGRGTSTHDGVAIAYATLQHLLAEK 922
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVS 964
+C+VLFVTHYP+IA+I F GSVGTYHVSYLT K G D DVTYLYK+V G+
Sbjct: 923 RCLVLFVTHYPEIAEISNGFPGSVGTYHVSYLTLQKDKGSYDH---DDVTYLYKLVRGLC 979
Query: 965 ESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN 1003
SFGFKVAQLAQ+PPSCI RA +AAKLEAEV +R +N
Sbjct: 980 SRSFGFKVAQLAQIPPSCIRRAISMAAKLEAEVRARERN 1018
Score = 135 (52.6 bits), Expect = 0., Sum P(3) = 0.
Identities = 33/80 (41%), Positives = 38/80 (47%)
Query: 1 MGKQKQQVISRFFAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXVSFSPAKRKVVSSLFXX 60
MGKQKQQ ISRFFAPK VSFSP+KRK++S
Sbjct: 1 MGKQKQQTISRFFAPKPKSPTHEPNPVAESSTPPPKISAT---VSFSPSKRKLLSDHLAA 57
Query: 61 XXXXXXXLSPHTLNPIPTPS 80
LSPHT NP+P P+
Sbjct: 58 ASPKKPKLSPHTQNPVPDPN 77
Score = 107 (42.7 bits), Expect = 0., Sum P(3) = 0.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 1010 LLVKLSDQEQEAQENMPVS-PESFYLGRVEASEDLISAYRDLFLNLKFATHDDNPAKSFQ 1068
+ KL + + + N + PE R +E+ ISA DLF +LKFA +++P K+F+
Sbjct: 1004 MAAKLEAEVRARERNTRMGEPEGHEEPR--GAEESISALGDLFADLKFALSEEDPWKAFE 1061
Query: 1069 FLKHARSIAKELIIR 1083
FLKHA IA ++ ++
Sbjct: 1062 FLKHAWKIAGKIRLK 1076
Score = 43 (20.2 bits), Expect = 0.00059, Sum P(2) = 0.00059
Identities = 15/45 (33%), Positives = 21/45 (46%)
Query: 981 SCISRATVI--AAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQE 1023
S IS V+ A KL + ++ R D+L+ SDQ E E
Sbjct: 592 SVISSPVVVDNAGKLLSALNKEAAVRGDLLDILITSSDQFPELAE 636
>UNIPROTKB|Q0J8X3 [details] [associations]
symbol:Os04g0682900 "Os04g0682900 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533
GO:GO:0005524 GO:GO:0003684 EMBL:AP008210 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0000404 KO:K08736
RefSeq:NP_001054300.1 UniGene:Os.58403
EnsemblPlants:LOC_Os04g58630.2 GeneID:4337442 KEGG:osa:4337442
Gramene:Q0J8X3 OMA:FIASVDQ Uniprot:Q0J8X3
Length = 813
Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
Identities = 404/787 (51%), Positives = 509/787 (64%)
Query: 1 MGKQKQQVISRFFAPKXXXXXXXXXXXXXXXXXXXXXXXXXXXVSFSPAKRKVVSSLFXX 60
MGK KQQV+SRFF+PK VSFSPAKR S+
Sbjct: 1 MGKPKQQVLSRFFSPKPRPSAPATADDPPPPPRPPAEPPVAAVVSFSPAKRARALSVSPK 60
Query: 61 XXXXXXXLSP--------HTLNPI--PTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMI 110
SP L P P P++ K YTPLEQQVV+LK ++PDVLLM+
Sbjct: 61 TTAKRAKPSPPPSDYVRRRLLEPPRPPPPAAVNPSGKAYTPLEQQVVDLKARHPDVLLMV 120
Query: 111 EVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQT 170
EVGY+FRFFGEDA +AA VLGI AH DH+F+TASIPTFRL HVRRLV AG KVGVV+QT
Sbjct: 121 EVGYRFRFFGEDAAVAASVLGIIAHPDHSFLTASIPTFRLGFHVRRLVAAGHKVGVVRQT 180
Query: 171 ETAAIKA-HGPGKAG-PFGRGLSALYTKATLXXXXXXXXXXXXXXXXSNYLVCVVDDDGN 228
ETAAIKA HG G AG PF RGLSA+YT+AT+ S YLVCVVD + +
Sbjct: 181 ETAAIKAAHGGGAAGTPFARGLSAVYTRATIEAAAGELEGGGAPDEGSRYLVCVVDKEVD 240
Query: 229 VGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQP 288
G +GF+V++GVVA+E+STG+VV+GEF DG R+G G P
Sbjct: 241 A----MGT--EGFEVKIGVVAIEVSTGEVVHGEFMDGVSRNGLEAVLLGLAPVEVILGTP 294
Query: 289 LSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGED--TLSNNEDQNM 346
+S TEK+++AYAGP SNVRVE SR CF GGALAE++SL+E G D T+ N M
Sbjct: 295 ISSATEKLMVAYAGPTSNVRVERTSRLCFSEGGALAELLSLFEKSGVDAPTVENGRHL-M 353
Query: 347 DVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLS 406
++ E+ N+ IEGIM MP+L + ALAL++R+LK FG++RI+C G+SF+ + + EM+LS
Sbjct: 354 EMNEENNNPRGIEGIMAMPELVIHALALSVRYLKGFGMDRIICFGSSFQPFTANTEMSLS 413
Query: 407 ANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVS 466
ANTLQQLEVL+N+S+GS G+L MN+T T +GSRL R W+THPLCDRN I R DAVS
Sbjct: 414 ANTLQQLEVLKNHSDGSLDGSLFQTMNNTCTAFGSRLFRHWLTHPLCDRNQICTRHDAVS 473
Query: 467 EIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRT 526
EI+ES+GS + S + Q + S + V ILSSVL L + DIQRGITRIFH
Sbjct: 474 EISESIGSQQYSTNNLQDEVDMSCSSSVRSDLSTILSSVLRMLAGTLDIQRGITRIFHCK 533
Query: 527 ATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAA 586
AT EF+ V+QAIL AGKQLQ+L ++ +T+HS LL+RLI TASS V+ AA
Sbjct: 534 ATAKEFVGVVQAILTAGKQLQKLVLEDTDTMSSQHRTVHSPLLRRLINTASSCTVLANAA 593
Query: 587 KLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNL 646
L+S +NK+AADQGD+LNL I S QF EVA V+ AK++L+ LI RKQLG+RNL
Sbjct: 594 TLVSCLNKDAADQGDMLNLFIASVDQFPEVAEGHATVEMAKQKLELLITEYRKQLGVRNL 653
Query: 647 EFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCR 706
EF +V+G THLIELP + KVP +W KVNSTKKTIRYH+PEV L+ L LA E+L ++CR
Sbjct: 654 EFKTVAGTTHLIELPVDRKVPSSWMKVNSTKKTIRYHTPEVSKNLENLLLAKEKLAVICR 713
Query: 707 AAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICS 766
W++FL +FG YYA+F ++ +VRP FV ++E QIHI
Sbjct: 714 TTWNNFLMDFGRYYAQFQATVKSLATLDCLYSLATLAKQNKYVRPNFVRENEASQIHIKD 773
Query: 767 GRHPVLD 773
GRHPV++
Sbjct: 774 GRHPVVN 780
>UNIPROTKB|P20585 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein Msh3" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0016447 "somatic recombination of immunoglobulin gene segments"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0019899 "enzyme binding" evidence=IPI] [GO:0032302 "MutSbeta
complex" evidence=IDA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IMP] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0019237 EMBL:AC008434 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0045910 MIM:608089
GO:GO:0008094 UniGene:Hs.648635 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0051096 PDB:3THW PDB:3THX PDB:3THY PDB:3THZ PDBsum:3THW
PDBsum:3THX PDBsum:3THY PDBsum:3THZ HOGENOM:HOG000029776 KO:K08736
EMBL:J04810 EMBL:U61981 EMBL:D61419 EMBL:AY275681 EMBL:AC010270
EMBL:AC022493 EMBL:BC011817 EMBL:BC130436 IPI:IPI00329605
PIR:A33507 RefSeq:NP_002430.3 UniGene:Hs.280987
ProteinModelPortal:P20585 SMR:P20585 DIP:DIP-35127N IntAct:P20585
MINT:MINT-192778 STRING:P20585 PhosphoSite:P20585 DMDM:229462953
PaxDb:P20585 PRIDE:P20585 Ensembl:ENST00000265081 GeneID:4437
KEGG:hsa:4437 UCSC:uc003kgz.3 CTD:4437 GeneCards:GC05P079986
H-InvDB:HIX0032037 HGNC:HGNC:7326 HPA:HPA036080 HPA:HPA036081
MIM:600887 neXtProt:NX_P20585 PharmGKB:PA31134 HOVERGEN:HBG006400
InParanoid:P20585 OMA:HYFELTV OrthoDB:EOG434W57 GenomeRNAi:4437
NextBio:17293 ArrayExpress:P20585 Bgee:P20585 CleanEx:HS_MSH3
Genevestigator:P20585 GermOnline:ENSG00000113318 GO:GO:0016447
Uniprot:P20585
Length = 1137
Score = 835 (299.0 bits), Expect = 6.5e-151, Sum P(2) = 6.5e-151
Identities = 183/509 (35%), Positives = 292/509 (57%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
+ + L + PDI+RG+ I+H+ + EF +++ LY H+ E++ +
Sbjct: 607 VFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKT-LY--------HLKSEFQAIIP 657
Query: 561 SKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ H S LL+ +IL P ++ L +N++AA GD L F + +
Sbjct: 658 AVNSHIQSDLLRTVILEI--PELLSPVEHYLKILNEQAAKVGDKTELFK-DLSDFPLIKK 714
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKVPLNWAKVNST 676
+ +Q +E+ + RK L + ++++VSG +IE+ A +P +W KV ST
Sbjct: 715 RKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGST 774
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
K R+HSP ++ L E+L + C A W FL++F +Y
Sbjct: 775 KAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHYHSLCKAVHHLATVDCI 834
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTNLHAEREYC 794
++ ++ RP ++ + V I +GRHPV+D +L D +VPN+T+L + E
Sbjct: 835 FSLAKVAKQGDYCRPTVQEERKIV---IKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERV 891
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YI+QVALI IMAQ+GS+VPA A + ++DGI+TRMGA+D+I +G+ST
Sbjct: 892 MIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQST 951
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+EEL + + I+R T+QSLVI+DELGRGTSTHDG+AIAYATL+Y + K + LFVTHY
Sbjct: 952 FMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHY 1011
Query: 915 PKIADIKTKFTGSVGTYHVSYLTSH--KVMGPMDSKSDQD-VTYLYKVVPGVSESSFGFK 971
P + +++ ++ VG YH+ +L S + P ++ D VT+LY++ G++ S+G
Sbjct: 1012 PPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTFLYQITRGIAARSYGLN 1071
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
VA+LA +P + +A + +LE ++++
Sbjct: 1072 VAKLADVPGEILKKAAHKSKELEGLINTK 1100
Score = 659 (237.0 bits), Expect = 6.5e-151, Sum P(2) = 6.5e-151
Identities = 167/447 (37%), Positives = 243/447 (54%)
Query: 44 VSFSPAKRKVV---SSLFXXXXXXXXXLSPHTLNPIPTPSSQTTHNKKYTPLEQQVVELK 100
VS +KR++ ++LF S L + S+ YTPLE Q +E+K
Sbjct: 181 VSSEDSKRQINQKDTTLFDLSQFGSSNTSHENLQKTASKSANKRSKSIYTPLELQYIEMK 240
Query: 101 TKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNA 160
++ D +L +E GYK+RFFGEDAE+AA+ L IY HLDHNFMTASIPT RL VHVRRLV
Sbjct: 241 QQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAK 300
Query: 161 GFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX---------XXXXXXXX 211
G+KVGVVKQTETAA+KA G ++ F R L+ALYTK+TL
Sbjct: 301 GYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIM 360
Query: 212 XXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGX 271
++YL+C+ ++ NV + G ++ +G+V V+ +TG+VV+ F D RS
Sbjct: 361 TDTSTSYLLCISENKENVRDKKKG------NIFIGIVGVQPATGEVVFDSFQDSASRSEL 414
Query: 272 XXXXXXXXXXXXXXGQPLSKQTEKML---LAYAGPASNVRVECASRDCFIGGGALAEVMS 328
LS+QTE ++ + + +RVE F A V
Sbjct: 415 ETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERMDNIYFEYSHAFQAVTE 474
Query: 329 LYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIM 388
Y +DT+ D+ +G+ I GI+N+ + +LA I++LK+F LE+++
Sbjct: 475 FY---AKDTV--------DI--KGSQ--IISGIVNLEKPVICSLAAIIKYLKEFNLEKML 519
Query: 389 CLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRW 447
+F+ LS ME MT++ TL+ LE+L+N ++ G+LL +++HT T +G R L++W
Sbjct: 520 SKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKW 579
Query: 448 VTHPLCDRNLISARLDAVSEIAESMGS 474
VT PL I+ARLDAVSE+ S S
Sbjct: 580 VTQPLLKLREINARLDAVSEVLHSESS 606
Score = 44 (20.5 bits), Expect = 1.1e-61, Sum P(2) = 1.1e-61
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 620 RKAVQSAKEELDSLINMCRKQL 641
+KA +KE L+ LIN RK+L
Sbjct: 1084 KKAAHKSKE-LEGLINTKRKRL 1104
>UNIPROTKB|F1P9S9 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:KRTKSIY
GeneTree:ENSGT00550000074949 EMBL:AAEX03002106
Ensembl:ENSCAFT00000013983 Uniprot:F1P9S9
Length = 1058
Score = 827 (296.2 bits), Expect = 9.5e-150, Sum P(2) = 9.5e-150
Identities = 182/508 (35%), Positives = 285/508 (56%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
+ + L + PDI+RG+ I+H+ + EF +++ LY H+ E++ +
Sbjct: 530 VFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKT-LY--------HLKSEFQALIP 580
Query: 561 SKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ H S LL+ IL P ++ L +N++AA GD L F + +
Sbjct: 581 AVNSHVQSDLLRTFILEI--PELLSPVEHYLRILNEQAAKIGDKTELFKDLT-DFPLIKK 637
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKVPLNWAKVNST 676
+ +Q +++ + RK L +L++++VSG +IE+ A +P +W KV ST
Sbjct: 638 RKDEIQEVTDKIQMHLQEIRKILKNPSLQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGST 697
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
K R+HSP ++ L E+L + C A W FL+ F +Y
Sbjct: 698 KAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLENFSAHYHSLCKAVHHLATVDCI 757
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTNLHAEREYC 794
++ ++ RP ++ + V I +GRHPV+D +L D +VPN TNL + E
Sbjct: 758 FSLAKVAKQGDYCRPSLQEERKIV---IKNGRHPVIDVLLGEQDQYVPNSTNLSGDSERV 814
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YI+QVALI IMAQ+GS+VPA A + ++DGI+TRMGA+D+I +G+ST
Sbjct: 815 MIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQST 874
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+EEL + + I+R T+QSLVI+DELGRGTSTHDG+AIAYATL++ + K + LFVTHY
Sbjct: 875 FMEELMDTAEIIRQATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHY 934
Query: 915 PKIADIKTKFTGSVGTYHVSYLTSH--KVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKV 972
P + +++ + VG YH+ +L + P + VT+LY++ G++ S+G V
Sbjct: 935 PPVCELEKSYLQEVGNYHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARSYGLNV 994
Query: 973 AQLAQLPPSCISRATVIAAKLEAEVSSR 1000
A+LA +P + +A + +LE V+ +
Sbjct: 995 AKLADVPGEILKKAASKSKELEGLVNMK 1022
Score = 656 (236.0 bits), Expect = 9.5e-150, Sum P(2) = 9.5e-150
Identities = 162/410 (39%), Positives = 231/410 (56%)
Query: 75 PIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA 134
P P PS++ T + YTPLE Q +ELK + D +L +E GYK+RFFGEDAE+AA+ L IY
Sbjct: 139 PDPKPSNKRTKSI-YTPLELQYIELKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYC 197
Query: 135 HLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALY 194
HLDHNFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F R L+ALY
Sbjct: 198 HLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAVGDNKSSLFSRKLTALY 257
Query: 195 TKATLXXXX---------XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRL 245
TK+TL +++L+C+ +++ NV + G ++ +
Sbjct: 258 TKSTLIGEDVNPLVKLDDAINVDEVMTDTSTSFLLCICENEENVKDKKKG------NIFI 311
Query: 246 GVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPAS 305
G+V V+ TG+VV+ F D RS LS+QTE L + A+
Sbjct: 312 GIVGVQPVTGEVVFDSFQDSASRSELETRILCLQPVEMLLPSRLSEQTET--LVHRATAA 369
Query: 306 NVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP 365
+VR D I + V Y + + +D+ Q + + GI+N+
Sbjct: 370 SVR------DDRIRVERMDNVYFEYSHAFQAVTEFYAKDAVDI--QASQ--SFSGIINLE 419
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
+ +LA IR+LK+F LE+++ +F+ SG ME MT++ TL+ LE+L+N ++
Sbjct: 420 KPVICSLAAVIRYLKEFNLEKVLSKPKNFKQFSGEMEFMTINGTTLRNLEILQNQTDMKT 479
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
G+LL +++HT T +G R L++WV PL I+ARLDAVSE+ S S
Sbjct: 480 KGSLLWVLDHTKTSFGRRKLKKWVVQPLLKLREINARLDAVSEVLHSESS 529
Score = 50 (22.7 bits), Expect = 2.6e-62, Sum P(2) = 2.6e-62
Identities = 32/140 (22%), Positives = 58/140 (41%)
Query: 505 VLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAI-LYAGKQLQQLHIDGEYREKVTSKT 563
+L LGR GI + AT FI ++++ L+ ++ Y ++V +
Sbjct: 896 ILDELGRGTSTHDGIAIAY---ATLEHFIRDVKSLTLFVTHYPPVCELEKSYLQEVGN-- 950
Query: 564 LHSALLKRLILTASSPAV--IGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARK 621
H L P + L + + A + LN+ +++ E+ + K
Sbjct: 951 YHMGFLVNEDENKEDPGEEPVPDFVTFLYQITRGIAARSYGLNVAKLADVP-GEILK--K 1007
Query: 622 AVQSAKEELDSLINMCRKQL 641
A +KE L+ L+NM RK+L
Sbjct: 1008 AASKSKE-LEGLVNMKRKRL 1026
>UNIPROTKB|F1MLH1 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:DAAA02021015
EMBL:DAAA02021016 EMBL:DAAA02021017 EMBL:DAAA02021018
IPI:IPI00867495 Ensembl:ENSBTAT00000010107 Uniprot:F1MLH1
Length = 1120
Score = 826 (295.8 bits), Expect = 2.5e-149, Sum P(2) = 2.5e-149
Identities = 179/509 (35%), Positives = 287/509 (56%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
+ + L + PDI+RG+ I+H+ + EF +++ LY H+ E++ +
Sbjct: 595 VFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKT-LY--------HLKSEFQALIP 645
Query: 561 SKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ H S LL+ IL P ++ L +N++AA GD L F + +
Sbjct: 646 AVNSHVESELLQTFILEI--PGLLSPVEHYLKILNEQAAKIGDKTELFK-DLSDFPLIKK 702
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKVPLNWAKVNST 676
+ +Q +++ + + RK L + ++++VSG +IE+ A +P +W K+ ST
Sbjct: 703 RKDEIQDVTKKIQTHLQEIRKILKNPSAQYVTVSGQEFMIEVKNSAVSCIPTDWVKIGST 762
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
K R+HSP ++ L E+L + C A W +FL+ F +Y
Sbjct: 763 KAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLAFLENFNEHYHTLCKAVHHLATIDCI 822
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTNLHAEREYC 794
++ +++ RP ++ + I I +GRHPV+D +L D FVPN T+L + E
Sbjct: 823 LSLAKVAKQRDYCRPTLQEERK---ILIKNGRHPVIDVLLGEQDQFVPNSTDLSGDSERV 879
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YI+QVALI +MAQ+GS+VPA A + ++DGI+TRMGA+D+I +G+ST
Sbjct: 880 MIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGQST 939
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+EEL + + I+R T QSLVI+DELGRGTSTHDG+AIAYATL++ + K + LFVTHY
Sbjct: 940 FMEELTDTAEIIRKATPQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVTHY 999
Query: 915 PKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQ---DVTYLYKVVPGVSESSFGFK 971
P + +++ ++ VG YH+ +L + + DQ V +LY++ G++ S+G
Sbjct: 1000 PPVCELEKSYSQQVGNYHMGFLVNEDESKQDAGEEDQVPDSVIFLYQITRGIAARSYGLN 1059
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
VA+LA +P + +A + +LE V+ +
Sbjct: 1060 VAKLADVPGEILKKAASKSKELEGLVNMK 1088
Score = 653 (234.9 bits), Expect = 2.5e-149, Sum P(2) = 2.5e-149
Identities = 163/409 (39%), Positives = 230/409 (56%)
Query: 79 PSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH 138
PS++ T + YTPLE Q +E+K + D +L +E GYK+RFFGEDAE+AA+ L IY HLDH
Sbjct: 208 PSNKRTKSI-YTPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDH 266
Query: 139 NFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKAT 198
NFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F R L+ALYTK+T
Sbjct: 267 NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSLFSRKLTALYTKST 326
Query: 199 LXXXX---------XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVA 249
L ++YL+C+ ++ NV + G V +G+V
Sbjct: 327 LIGEDVNPLVKLDDAVNVDEVMTDTSTSYLLCICENKENVKDKKRG------SVSIGIVG 380
Query: 250 VEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML---LAYAGPASN 306
V+ +TG+VV+ F D RS LS+QTE ++ A +
Sbjct: 381 VQPATGEVVFDSFQDSASRSELETRILCLQPVELLLPSDLSEQTETLIHRVTAMSVRDDR 440
Query: 307 VRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD 366
+RVE F A EV Y +D + D+ +G+ + I+N+
Sbjct: 441 IRVERMKNVYFEYSHAFQEVTEFY---AKDVV--------DI--KGSQ--SFSDIINLEK 485
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEY 425
+ +LA IR+LK+F LE+++ +F+ LSG ME MT++ TL+ LE+L+N ++
Sbjct: 486 PVICSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEMEFMTINGTTLRNLEILQNQTDMKTK 545
Query: 426 GTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
G+L +++HT T +G R L++WVT PL I+ARLDAVSE+ S S
Sbjct: 546 GSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESS 594
Score = 49 (22.3 bits), Expect = 1.4e-61, Sum P(2) = 1.4e-61
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 620 RKAVQSAKEELDSLINMCRKQL 641
+KA +KE L+ L+NM RK+L
Sbjct: 1072 KKAASKSKE-LEGLVNMKRKKL 1092
Score = 37 (18.1 bits), Expect = 2.8e-84, Sum P(2) = 2.8e-84
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 456 NLISARLDAVSEIAESMGSYRTSESVGQHDEK 487
N SAR +S +S GS +++ S EK
Sbjct: 15 NPASARQAVLSRFFQSTGSLKSTASPAGAAEK 46
>UNIPROTKB|F1LQM8 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0003697 "single-stranded DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08736 CTD:4437
GeneTree:ENSGT00550000074949 IPI:IPI00196502 RefSeq:NP_001178886.1
UniGene:Rn.162551 Ensembl:ENSRNOT00000018449 GeneID:499505
KEGG:rno:499505 NextBio:703076 ArrayExpress:F1LQM8 Uniprot:F1LQM8
Length = 1105
Score = 840 (300.8 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 190/520 (36%), Positives = 291/520 (55%)
Query: 489 SDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQ 548
SDV E + + ++L L PD++RG+ I+H+ + EF +++ + +LQ
Sbjct: 556 SDVLHSESSVFEQIENLLRKL---PDVERGLCSIYHKKCSTQEFFLIVKNLCQLKSELQA 612
Query: 549 LHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMII 608
L V S + S LL+ +L P ++ L +N++AA GD L
Sbjct: 613 L------MPAVNSH-VQSDLLRARVLEV--PELLSPVEPYLKVLNEQAAKAGDKTELFK- 662
Query: 609 SNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKV 666
F + + + +Q + + RK L + +L++++VSG ++E+ A V
Sbjct: 663 DLSDFPLIKKRKNEIQEVIHSIQMHLQELRKILKLPSLQYVTVSGQEFMVEIKNSAVSCV 722
Query: 667 PLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXX 726
P +W KV STK R+HSP V+ +L E+L + C A W FL+ FG +Y
Sbjct: 723 PTDWVKVGSTKAVSRFHSPFVVENYRRLNQLREQLVLDCNAEWLDFLENFGEHYHTLCKA 782
Query: 727 XXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPND 784
++ ++ RP E +I I +GRHP++D +L D FVPN
Sbjct: 783 VDHLATVDCIFSLAKVAKQGSYCRPTL---QEEKKIIIKNGRHPMIDVLLGEQDQFVPNS 839
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
TNL + E IITGPNMGGKS YI+QVAL+ IMAQ+GS+VPA A + ++DGI+TR GA
Sbjct: 840 TNLSQDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGA 899
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
+D+I +GRSTF+EEL + + I++ T +SLVI+DELGRGTSTHDG+AIAYATL+Y +
Sbjct: 900 ADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDV 959
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT----SHKVMGPMDSKSDQDVTYLYKVV 960
K + LFVTHYP + +++ ++ VG YH+ +L S + G M+ D VT+LY++
Sbjct: 960 KSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDS-VTFLYQIT 1018
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
G++ S+G VA+LA +P + +A + +LE V+ R
Sbjct: 1019 RGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVNLR 1058
Score = 638 (229.6 bits), Expect = 3.2e-149, Sum P(2) = 3.2e-149
Identities = 160/421 (38%), Positives = 227/421 (53%)
Query: 69 SPHTLNPIPTPSSQTTHNKK-YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAA 127
SP T +K YTPLE Q +++K + D +L +E GYK+RFFGEDAE+AA
Sbjct: 166 SPEAFQKTSTCKPFNRRSKSIYTPLELQYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAA 225
Query: 128 KVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFG 187
+ L IY HLDHNFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F
Sbjct: 226 RELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFS 285
Query: 188 RGLSALYTKATLXXXX---------XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFG 238
R L+ALYTK+TL +NYL+C+ ++ N+ + G
Sbjct: 286 RKLTALYTKSTLIGEDVNPLIRLDDSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKG--- 342
Query: 239 DGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLL 298
++ G+V V+ +TG+VV+ F D R LS+ TE ML+
Sbjct: 343 ---NISFGIVGVQPATGEVVFDCFQDSASRLELETRTASLQPVELLLPSQLSEPTE-MLI 398
Query: 299 AYAGPAS----NVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNH 354
A S +RVE + F A VM Y DT QG+
Sbjct: 399 RRATAVSVGDDRIRVERMNNTHFEYSHAFQTVMEFYARETVDT-------------QGSQ 445
Query: 355 RSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQL 413
++ G++++ + ALA IR+LK+F L++++ +F+ LS ME M ++ TL+ L
Sbjct: 446 --SLSGVIHLEKPVICALAAIIRYLKEFNLDKVLSKPENFKQLSSGMEFMRINGTTLRNL 503
Query: 414 EVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMG 473
E+L+N ++ G+LL +++HT T +G R L++WVT PL I+ARLDA+S++ S
Sbjct: 504 EILQNQTDMKTRGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLRDINARLDAISDVLHSES 563
Query: 474 S 474
S
Sbjct: 564 S 564
Score = 45 (20.9 bits), Expect = 2.2e-59, Sum P(2) = 2.2e-59
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 620 RKAVQSAKEELDSLINMCRKQL 641
+KA +KE L+ L+N+ RK+L
Sbjct: 1042 QKAAHKSKE-LEGLVNLRRKRL 1062
>MGI|MGI:109519 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003677 "DNA binding" evidence=IGI] [GO:0003684
"damaged DNA binding" evidence=IGI] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0019237 "centromeric DNA binding" evidence=IDA] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=ISO;IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=ISO;IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:109519 GO:GO:0005524 GO:GO:0003684
GO:GO:0019237 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 KO:K08736
CTD:4437 HOVERGEN:HBG006400 OrthoDB:EOG434W57 GO:GO:0016447
EMBL:M80360 EMBL:L10319 EMBL:L10295 EMBL:L10296 EMBL:L10297
EMBL:L10298 EMBL:L10299 EMBL:L10300 EMBL:L10301 EMBL:L10304
EMBL:L10305 EMBL:L10306 EMBL:L10307 EMBL:L10308 EMBL:L10309
EMBL:L10310 EMBL:L10311 EMBL:L10312 EMBL:L10313 EMBL:L10314
EMBL:L10315 EMBL:L10316 EMBL:L10317 EMBL:L10318 EMBL:M24919
IPI:IPI00896729 PIR:A32495 RefSeq:NP_034959.2 UniGene:Mm.343101
ProteinModelPortal:P13705 SMR:P13705 STRING:P13705
PhosphoSite:P13705 PaxDb:P13705 PRIDE:P13705 GeneID:17686
KEGG:mmu:17686 InParanoid:P13705 ChiTaRS:MSH3 NextBio:292256
CleanEx:MM_MSH3 Genevestigator:P13705 GermOnline:ENSMUSG00000014850
Uniprot:P13705
Length = 1091
Score = 829 (296.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 193/530 (36%), Positives = 293/530 (55%)
Query: 489 SDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQ 548
SDV E + + ++L L PD++RG+ I+H+ + EF +++++ +LQ
Sbjct: 556 SDVLHSESSVFEQIENLLRKL---PDVERGLCSIYHKKCSTQEFFLIVKSLCQLKSELQA 612
Query: 549 LHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMII 608
L V S + S LL+ LI+ SP L +N AA GD L
Sbjct: 613 L------MPAVNSH-VQSDLLRALIVELLSPV-----EHYLKVLNGPAAKVGDKTELFK- 659
Query: 609 SNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKV 666
F + + + +Q + + RK L + +L++++VSG +IE+ A +
Sbjct: 660 DLSDFPLIKKRKNEIQEVIHSIQMRLQEFRKILKLPSLQYVTVSGQEFMIEIKNSAVSCI 719
Query: 667 PLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXX 726
P +W KV STK R+H P ++ + +L E+L + C A W FL+ FG +Y
Sbjct: 720 PADWVKVGSTKAVSRFHPPFIVESYRRLNQLREQLVLDCNAEWLGFLENFGEHYHTLCKA 779
Query: 727 XXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPND 784
++ N+ RP E +I I +GRHP++D +L D FVPN
Sbjct: 780 VDHLATVDCIFSLAKVAKQGNYCRPTL---QEEKKIIIKNGRHPMIDVLLGEQDQFVPNS 836
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
T+L ++ E IITGPNMGGKS YI+QV L+ IMAQ+GS+VPA A + ++DGI+TRMGA
Sbjct: 837 TSL-SDSERVMIITGPNMGGKSSYIKQVTLVTIMAQIGSYVPAEEATIGIVDGIFTRMGA 895
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
+D+I +GRSTF+E+L + + I+R + QSLVI+DELGRGTSTHDG+AIAYATL+Y +
Sbjct: 896 ADNIYKGRSTFMEQLTDTAEIIRRASPQSLVILDELGRGTSTHDGIAIAYATLEYFIRDV 955
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT----SHKVMGPMDSKSDQDVTYLYKVV 960
K + LFVTHYP + +++ + VG YH+ +L S + G M+ D VT+LY++
Sbjct: 956 KSLTLFVTHYPPVCELEKCYPEQVGNYHMGFLVNEDESKQDSGDMEQMPDS-VTFLYQIT 1014
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDL 1010
G++ S+G VA+LA +P + +A + +LE VS R + DL
Sbjct: 1015 RGIAARSYGLNVAKLADVPREVLQKAAHKSKELEGLVSLRRKRLECFTDL 1064
Score = 634 (228.2 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 158/396 (39%), Positives = 227/396 (57%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTF 148
YTPLE Q +++K ++ D +L +E GYK+RFFGEDAE+AA+ L IY HLDHNFMTASIPT
Sbjct: 187 YTPLELQYLDMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTH 246
Query: 149 RLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX----- 203
RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F R L+ALYTK+TL
Sbjct: 247 RLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDVNPLI 306
Query: 204 ----XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVY 259
+NYL+C+ ++ N+ + G ++ +GVV V+ +TG+VV+
Sbjct: 307 RLDDSVNIDEVMTDTSTNYLLCIYEEKENIKDKKKG------NLSVGVVGVQPATGEVVF 360
Query: 260 GEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIG 319
F D R LS+ TE ML+ A +NV V RD I
Sbjct: 361 DCFQDSASRLELETRISSLQPVELLLPSDLSEPTE-MLIQRA---TNVSV----RDDRIR 412
Query: 320 GGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHL 379
+ Y + + T++ + + V QG+ ++ G++N+ + ALA IR+L
Sbjct: 413 VERMNNTYFEYSHAFQ-TVTEFYAREI-VDSQGSQ--SLSGVINLEKPVICALAAVIRYL 468
Query: 380 KQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTI 438
K+F LE+++ SF+ LS ME M ++ TL+ LE+++N ++ G+LL +++HT T
Sbjct: 469 KEFNLEKMLSKPESFKQLSSGMEFMRINGTTLRNLEMVQNQTDMKTKGSLLWVLDHTKTS 528
Query: 439 YGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
+G R L+ WVT PL I+ARLDAVS++ S S
Sbjct: 529 FGRRKLKNWVTQPLLKLREINARLDAVSDVLHSESS 564
>ASPGD|ASPL0000012704 [details] [associations]
symbol:AN3749 species:162425 "Emericella nidulans"
[GO:0061500 "gene conversion at mating-type locus, termination of
copy-synthesis" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 EMBL:BN001302
EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 737 (264.5 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 164/498 (32%), Positives = 273/498 (54%)
Query: 509 LGR-SPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSA 567
LG+ D+++G+ RI++ + E + ++Q + ++ + E S
Sbjct: 595 LGKIKHDLEKGLIRIYYGKCSRPELLTILQTMQMIAQEFADI-------ESPADTGFSSP 647
Query: 568 LLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAK 627
+ + I+ S P ++ L+ +N AA D + E++ + + + +
Sbjct: 648 AISQAIM--SLPTILKDVVFFLNKINMHAARNDDKYEFFR-EEEETEEISEHKLGIGAVE 704
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIEL----PANFKVPLNWAKVNSTKKTIRYH 683
EL+ + + LG + + ++SV+GI +L+E+ PA +VP +W K++ TKK R+H
Sbjct: 705 HELEEHRPVAGEALGKKMVTYVSVAGIDYLVEVENNSPAIKRVPASWMKISGTKKVSRFH 764
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+PEV+ + Q E L C A+ + E Y +
Sbjct: 765 TPEVVKMIRQRDQHREALAAACDKAFLALQAEIATNYQALRDCVQSLATLDCLVSLATLA 824
Query: 744 RNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMG 803
+V+P + ++ IH+ GRHP+++ +LLD++VPND NL + + ++TGPNMG
Sbjct: 825 SQPGYVKPEYTEE---TCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALLVTGPNMG 881
Query: 804 GKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEAS 863
GKS Y+RQVALI IM Q+GS+VPA +A+L +LD ++TRMGA D++ G STF+ EL+E +
Sbjct: 882 GKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETA 941
Query: 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923
IL+ T +SLVI+DELGRGTSTHDGVAIA A LDY++ + + LF+THY ++ +
Sbjct: 942 DILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHS 1001
Query: 924 FT-GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSC 982
F G + H+ + S + +D+D+T+LY++ GV+ S+G VA+LA LP
Sbjct: 1002 FPDGELRNVHMRFSES-------GTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPL 1054
Query: 983 ISRATVIAAKLEAEVSSR 1000
+ A +A+LE ++ R
Sbjct: 1055 LEMAKQKSAELEEKIRRR 1072
Score = 588 (212.0 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 149/406 (36%), Positives = 220/406 (54%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI--------Y------ 133
K TP+E+QV+E+K K+ D +L+IEVGYKFRFFGEDA +AAK L I Y
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSE 253
Query: 134 AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSAL 193
AHLD F +ASIP RL+VHV+RLV AG KVGVV+Q ETAA+KA G + PF R L+ +
Sbjct: 254 AHLDR-FASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNV 312
Query: 194 YTKATLXXXXXX---XXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAV 250
YTK+T + Y++C+ + + G +G+ V +G+VAV
Sbjct: 313 YTKSTYIDDIESLEGSTAGASGASATGYILCITETNAR------G-WGNDEKVHVGIVAV 365
Query: 251 EISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNV--- 307
+ +TGD+VY EF+DGF+RS LSK TEK++ +G NV
Sbjct: 366 QPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGELSKATEKLVQHLSGSKMNVFGD 425
Query: 308 --RVECASRDCFIGGGALAEVMSLY-ENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNM 364
RVE A + + + V S Y E M ++ D + + ++ ++ +
Sbjct: 426 KVRVERAPKAKTAAAESHSHVSSFYAEKM----------KSADAADDEVASNLLQKVLGL 475
Query: 365 PDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSE 424
PD L+ I+H+ ++GLE ++ L F+ S M L+ NTL LE+ +N ++ S
Sbjct: 476 PDQVTICLSAMIKHMTEYGLEHVLQLTKYFQHFSSRSHMLLNGNTLTSLEIYQNQTDYSS 535
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
G+L ++ T T +G R+LR+WV PL DR + R++AV E+ +
Sbjct: 536 KGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKD 581
Score = 48 (22.0 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 809 IRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
IR+ L G +A VG+ V ++ A+ V++ + + M
Sbjct: 1069 IRRRRLAGFVAAVGAVVQSNQADESVIERLVSSM 1102
Score = 44 (20.5 bits), Expect = 8.2e-77, Sum P(3) = 8.2e-77
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 315 DCFIGGG--ALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQAL 372
DC +G G + E S+ E+ +ED P Q ++ +G + + Q +
Sbjct: 149 DCLVGIGRNCVGETTSI-----EEAAEGDEDDETPQPVQPKGKAGKKGGGKLTPMEKQVI 203
Query: 373 ALTIRHL 379
+ +H+
Sbjct: 204 EIKKKHM 210
Score = 38 (18.4 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 KQKQQVISRFFAPK 16
K+KQ IS FF K
Sbjct: 17 KRKQPTISSFFTKK 30
>UNIPROTKB|Q5B6T1 [details] [associations]
symbol:msh3 "DNA mismatch repair protein msh3"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
EMBL:BN001302 EMBL:AACD01000061 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HSSP:P23909 GO:GO:0000735
HOGENOM:HOG000029776 KO:K08736 OrthoDB:EOG42NN7M RefSeq:XP_661353.1
STRING:Q5B6T1 GeneID:2873172 KEGG:ani:AN3749.2 Uniprot:Q5B6T1
Length = 1105
Score = 737 (264.5 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 164/498 (32%), Positives = 273/498 (54%)
Query: 509 LGR-SPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSA 567
LG+ D+++G+ RI++ + E + ++Q + ++ + E S
Sbjct: 595 LGKIKHDLEKGLIRIYYGKCSRPELLTILQTMQMIAQEFADI-------ESPADTGFSSP 647
Query: 568 LLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAK 627
+ + I+ S P ++ L+ +N AA D + E++ + + + +
Sbjct: 648 AISQAIM--SLPTILKDVVFFLNKINMHAARNDDKYEFFR-EEEETEEISEHKLGIGAVE 704
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIEL----PANFKVPLNWAKVNSTKKTIRYH 683
EL+ + + LG + + ++SV+GI +L+E+ PA +VP +W K++ TKK R+H
Sbjct: 705 HELEEHRPVAGEALGKKMVTYVSVAGIDYLVEVENNSPAIKRVPASWMKISGTKKVSRFH 764
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+PEV+ + Q E L C A+ + E Y +
Sbjct: 765 TPEVVKMIRQRDQHREALAAACDKAFLALQAEIATNYQALRDCVQSLATLDCLVSLATLA 824
Query: 744 RNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMG 803
+V+P + ++ IH+ GRHP+++ +LLD++VPND NL + + ++TGPNMG
Sbjct: 825 SQPGYVKPEYTEE---TCIHVEQGRHPMVEQLLLDSYVPNDINLDSSKTRALLVTGPNMG 881
Query: 804 GKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEAS 863
GKS Y+RQVALI IM Q+GS+VPA +A+L +LD ++TRMGA D++ G STF+ EL+E +
Sbjct: 882 GKSSYVRQVALIAIMGQIGSYVPAQAAKLGMLDAVFTRMGAFDNMLAGESTFMVELSETA 941
Query: 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923
IL+ T +SLVI+DELGRGTSTHDGVAIA A LDY++ + + LF+THY ++ +
Sbjct: 942 DILKQATPRSLVILDELGRGTSTHDGVAIAQAVLDYMVRSIRSLTLFITHYQHLSAMVHS 1001
Query: 924 FT-GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSC 982
F G + H+ + S + +D+D+T+LY++ GV+ S+G VA+LA LP
Sbjct: 1002 FPDGELRNVHMRFSES-------GTGADEDITFLYEIGEGVAHRSYGLNVARLANLPAPL 1054
Query: 983 ISRATVIAAKLEAEVSSR 1000
+ A +A+LE ++ R
Sbjct: 1055 LEMAKQKSAELEEKIRRR 1072
Score = 588 (212.0 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 149/406 (36%), Positives = 220/406 (54%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI--------Y------ 133
K TP+E+QV+E+K K+ D +L+IEVGYKFRFFGEDA +AAK L I Y
Sbjct: 194 KLTPMEKQVIEIKKKHMDTILLIEVGYKFRFFGEDARIAAKELSIVCIPGKFRYDEHPSE 253
Query: 134 AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSAL 193
AHLD F +ASIP RL+VHV+RLV AG KVGVV+Q ETAA+KA G + PF R L+ +
Sbjct: 254 AHLDR-FASASIPVQRLHVHVKRLVAAGHKVGVVRQLETAALKAAGDNRNAPFVRKLTNV 312
Query: 194 YTKATLXXXXXX---XXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAV 250
YTK+T + Y++C+ + + G +G+ V +G+VAV
Sbjct: 313 YTKSTYIDDIESLEGSTAGASGASATGYILCITETNAR------G-WGNDEKVHVGIVAV 365
Query: 251 EISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNV--- 307
+ +TGD+VY EF+DGF+RS LSK TEK++ +G NV
Sbjct: 366 QPTTGDIVYDEFDDGFMRSEIETRLLHIAPCEMLIVGELSKATEKLVQHLSGSKMNVFGD 425
Query: 308 --RVECASRDCFIGGGALAEVMSLY-ENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNM 364
RVE A + + + V S Y E M ++ D + + ++ ++ +
Sbjct: 426 KVRVERAPKAKTAAAESHSHVSSFYAEKM----------KSADAADDEVASNLLQKVLGL 475
Query: 365 PDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSE 424
PD L+ I+H+ ++GLE ++ L F+ S M L+ NTL LE+ +N ++ S
Sbjct: 476 PDQVTICLSAMIKHMTEYGLEHVLQLTKYFQHFSSRSHMLLNGNTLTSLEIYQNQTDYSS 535
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
G+L ++ T T +G R+LR+WV PL DR + R++AV E+ +
Sbjct: 536 KGSLFWTLDRTQTRFGQRMLRKWVGRPLLDRRQLEDRVNAVEELKD 581
Score = 48 (22.0 bits), Expect = 2.0e-53, Sum P(3) = 2.0e-53
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 809 IRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
IR+ L G +A VG+ V ++ A+ V++ + + M
Sbjct: 1069 IRRRRLAGFVAAVGAVVQSNQADESVIERLVSSM 1102
Score = 44 (20.5 bits), Expect = 8.2e-77, Sum P(3) = 8.2e-77
Identities = 14/67 (20%), Positives = 28/67 (41%)
Query: 315 DCFIGGG--ALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQAL 372
DC +G G + E S+ E+ +ED P Q ++ +G + + Q +
Sbjct: 149 DCLVGIGRNCVGETTSI-----EEAAEGDEDDETPQPVQPKGKAGKKGGGKLTPMEKQVI 203
Query: 373 ALTIRHL 379
+ +H+
Sbjct: 204 EIKKKHM 210
Score = 38 (18.4 bits), Expect = 5.2e-134, Sum P(3) = 5.2e-134
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 3 KQKQQVISRFFAPK 16
K+KQ IS FF K
Sbjct: 17 KRKQPTISSFFTKK 30
>UNIPROTKB|F1RF09 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0019899 "enzyme binding" evidence=IEA] [GO:0019237 "centromeric
DNA binding" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0019237 GO:GO:0003697 GO:GO:0043570
GO:GO:0045910 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032302
GO:GO:0032181 GO:GO:0032357 GO:GO:0032142 GO:GO:0051096 OMA:KRTKSIY
GO:GO:0016447 GeneTree:ENSGT00550000074949 EMBL:CU927965
EMBL:CU928503 Ensembl:ENSSSCT00000015430 Uniprot:F1RF09
Length = 1126
Score = 695 (249.7 bits), Expect = 7.2e-131, Sum P(3) = 7.2e-131
Identities = 167/519 (32%), Positives = 273/519 (52%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
+ + + L + PDI+RG+ I+H+ + EF +++ LY H+ E++ +
Sbjct: 595 VFGQIESHLRKLPDIERGLCSIYHKKCSTQEFFLIVKT-LY--------HLKSEFQALIP 645
Query: 561 SKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ H S LL+ +L P ++ L +N++AA GD L F + +
Sbjct: 646 AVNSHVQSNLLQTCLLEI--PELLSPVEHYLKILNEQAAKNGDKTELFK-DLSDFPVIKK 702
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKVPLNWAKVNST 676
+ +Q ++ + + RK L + ++++VSG +IE+ A +P +W KV ST
Sbjct: 703 RKDEIQEVTNKIQTHLQEIRKILKNPSAQYVTVSGQEFMIEVKNSAVSCIPTDWVKVGST 762
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
K R+HSP ++ L E+L + C A W FL+ F +Y
Sbjct: 763 KAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLENFSEHYHSLCKAVHHLATADCI 822
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTNLHAEREYC 794
++ ++ RP ++ + V I +GRHPV+D +L D +VPN T+L E
Sbjct: 823 FSLAKVAKQGDYCRPTLQEERKIV---IKNGRHPVIDVLLGEQDQYVPNSTDLSEWSELS 879
Query: 795 QIITGPNMGGKSCYIRQVALIG-IMAQVGSFVP-ASSAELHVLDGIYTRMGASDSIQQGR 852
++ GP+ G + + + + LI I+A + FV A + L VLD + RMGA+D+I +GR
Sbjct: 880 LVLVGPSRGIRGNFFKIIRLINHILALMALFVILAEESWLFVLDFFFIRMGAADNIYKGR 939
Query: 853 STFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT 912
STF+EEL + + I+R T+QSLVI+DELGRGTSTHDG+AIAYATL++ + K + LFVT
Sbjct: 940 STFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLEHFIRDVKSLTLFVT 999
Query: 913 HYPKIADIKTKFTGSVGTYHVSYLTSH--KVMGPMDSKSDQD-VTYLYKVVPGVSESSFG 969
HYP + +++ ++ VG YH+ +L + P + D VT+LY++ G + S+G
Sbjct: 1000 HYPPVCELEKSYSQQVGNYHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYG 1059
Query: 970 FKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKR 1008
VA+LA +P + +A + +LE V NR KR
Sbjct: 1060 LNVAKLADVPGEILKKAASKSKELEGLV-----NRKRKR 1093
Score = 656 (236.0 bits), Expect = 7.2e-131, Sum P(3) = 7.2e-131
Identities = 164/410 (40%), Positives = 229/410 (55%)
Query: 79 PSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH 138
PS++ T + YTPLE Q +E+K + D +L +E GYK+RFFGEDAE+AA+ L IY HLDH
Sbjct: 208 PSNKRTKSV-YTPLELQYLEMKQQQKDAILCVECGYKYRFFGEDAEIAARELNIYCHLDH 266
Query: 139 NFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKAT 198
NFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F R L+ALYTK+T
Sbjct: 267 NFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKST 326
Query: 199 LXXXX---------XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVA 249
L ++YL+C+ ++ NV + G ++ +G+V
Sbjct: 327 LIGEDVNPLVKLDDAVNVDEIMTDTSTSYLLCLCENKENVKDRKKG------NIFIGIVG 380
Query: 250 VEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPAS---- 305
V+ +TG+VV+ F D RS LS+ TE ML+ A S
Sbjct: 381 VQPATGEVVFDSFQDSASRSELETRILCLQPVELLLPSDLSEPTE-MLIHRATAVSVRDD 439
Query: 306 NVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP 365
+RVE F A EV Y +D + N Q++ GI+ +
Sbjct: 440 RIRVERMDNMYFEYSHAFQEVTEFY---AKDIVDNKGSQSLS------------GIIKLE 484
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
+ +LA IR+LK+F LE+++ +F+ LSG ME MT++ TL+ LE+L+N ++
Sbjct: 485 KPVICSLAAIIRYLKEFNLEKVLSKPKNFKQLSGEMEFMTINGTTLRNLEILQNQTDMKT 544
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
G+L +++HT T +G R L++WVT PL I+ARLDAVSE+ S S
Sbjct: 545 KGSLFWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVVHSESS 594
Score = 49 (22.3 bits), Expect = 8.8e-62, Sum P(3) = 8.8e-62
Identities = 32/141 (22%), Positives = 59/141 (41%)
Query: 505 VLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAI-LYAGKQLQQLHIDGEYREKVTSKT 563
+L LGR GI + AT FI ++++ L+ ++ Y ++V +
Sbjct: 963 ILDELGRGTSTHDGIAIAY---ATLEHFIRDVKSLTLFVTHYPPVCELEKSYSQQVGN-- 1017
Query: 564 LHSALLKRLILTASSPAVIGKA---AKLLSTVNKEAADQGDLLNLMIISNGQFSEVARAR 620
H L + P K L + + +A + LN+ +++ E+ +
Sbjct: 1018 YHMGFLVNEDESKQDPGEEDKVPDFVTFLYQITRGSAARSYGLNVAKLADVP-GEILK-- 1074
Query: 621 KAVQSAKEELDSLINMCRKQL 641
KA +KE L+ L+N RK+L
Sbjct: 1075 KAASKSKE-LEGLVNRKRKRL 1094
Score = 38 (18.4 bits), Expect = 7.2e-131, Sum P(3) = 7.2e-131
Identities = 10/39 (25%), Positives = 16/39 (41%)
Query: 45 SFSPAKRKVVSSLFXXXXXXXXXLSPHTLNPIPTPSSQT 83
S +PA++ V+S F +P TP S +
Sbjct: 15 SSAPARQAVLSRFFQSTGSLKSTSAPTGAAETVTPDSDS 53
>UNIPROTKB|A4R0R0 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0005634
GO:GO:0006298 EMBL:CM001231 GO:GO:0030983 eggNOG:COG0249
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08736
OrthoDB:EOG42NN7M RefSeq:XP_003709956.1 STRING:A4R0R0
EnsemblFungi:MGG_09306T0 GeneID:2680221 KEGG:mgr:MGG_09306
Uniprot:A4R0R0
Length = 1151
Score = 741 (265.9 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 179/544 (32%), Positives = 290/544 (53%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS 561
L +L+S+ D++R + RIF+ T E +AV+Q LQ++ ++ ++ +
Sbjct: 619 LQKLLSSI--KTDLERSLIRIFYGRCTRPELLAVLQT-------LQRIAVEYIVVKEPSQ 669
Query: 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLM------IISNGQFSE 615
S L+ + AS P + L+ +N +AA + D +G+ E
Sbjct: 670 TGFKSNLVSEAL--ASLPRIREIVVSYLNRINPDAARKNDKYEFFRDESDDTGDDGE-DE 726
Query: 616 VARARKAVQSAKEELDSLINMCRKQLGMRN-LEFMSVSGITHLIELPANF--KVPLNWAK 672
+ + ++ + ++ELD+ + LG + +++++V+GI +LIE+P KVP +WAK
Sbjct: 727 ITTQKMSIAAVEQELDAHRSDAAATLGRKKAVDYVTVAGIEYLIEVPNTEIRKVPASWAK 786
Query: 673 VNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXX 732
++ TKK R+H+PEV+ + + E L C AA+ + L Y
Sbjct: 787 ISGTKKLSRFHTPEVVRLIAERDQHKEALAAACDAAFKAMLASIADQYQPLRDAVSSLAT 846
Query: 733 XXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAERE 792
+ + +P+ + D P I + GRHP+ + L ++P T L +
Sbjct: 847 LDCLLSFAQVAALPGYSKPIILPDSHPPTIAVAGGRHPIAEHTLPSGYIPFSTTLSSPAP 906
Query: 793 YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGR 852
++TGPNMGGKS ++R +AL+ ++AQVGSFVPA S L + D IYTRMGASD++ G
Sbjct: 907 LAHLVTGPNMGGKSSFVRALALLVLLAQVGSFVPADSLRLTLSDAIYTRMGASDNLFAGE 966
Query: 853 STFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT 912
STF+ E+ E + ILR T +SLV++DELGRGTSTHDG AIA+A LD+++ + +C+ LF+T
Sbjct: 967 STFMVEVGETAAILRTATPRSLVLLDELGRGTSTHDGAAIAHAVLDHVVRNTRCLTLFIT 1026
Query: 913 HYPKIADIKTKF-TGSVGTYHVSYLTSHKVMGPMDSKSDQDV----TYLYKVVPGVSESS 967
HY +A + TG V H+ + +S D D DV T+LY+V GV+ S
Sbjct: 1027 HYQSLARVAEGLGTGLVRNVHMRFTSSRDDNDDGDKDQDDDVGENITFLYEVADGVAHRS 1086
Query: 968 FGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDL-LVKLSDQEQEAQENMP 1026
+G VA+LA++P + A + K+E +V +R + RSA + L V D + E++
Sbjct: 1087 YGLNVARLARIPRKILEVAARKSRKMEEDVRTR-RLRSATKLLEAVCRGDGSDDQLEHLL 1145
Query: 1027 VSPE 1030
S E
Sbjct: 1146 SSIE 1149
Score = 560 (202.2 bits), Expect = 3.0e-129, Sum P(2) = 3.0e-129
Identities = 154/422 (36%), Positives = 217/422 (51%)
Query: 75 PIPTPSSQTTHNK--KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI 132
P P P + K K TP+E Q +E+K K+ D +L++EVGYKFRFFGEDA +A K L I
Sbjct: 210 PPPPPKGKKKGAKSGKLTPMELQFLEIKRKHMDTVLIVEVGYKFRFFGEDARIAGKELSI 269
Query: 133 --------Y------AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAH 178
Y AHLD F +ASIP RL VH +RLV AG KVGVV+Q ETAA+K
Sbjct: 270 VCIPGKFRYDEHPSEAHLDR-FASASIPVHRLPVHAKRLVAAGHKVGVVRQIETAALKKA 328
Query: 179 GPGKAGPFGRGLSALYTKATLXXXXXX--XXXXXXXXXXSNYLVCVVDDDGNVGKIRNGV 236
G + PF R L +YTK T YL+C+ + K
Sbjct: 329 GDNRNAPFVRKLCEVYTKGTYIDEMGEMDAQTGASGAHSGGYLLCLTE---TAAK----- 380
Query: 237 FGDGFD--VRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTE 294
G G D V +G+VAV+ +TGD++Y F DGF+RS LSK TE
Sbjct: 381 -GSGTDEKVDVGLVAVQPATGDIIYDSFEDGFMRSEIETRLLHISPCELLIVGQLSKATE 439
Query: 295 KMLLAYAGPASNV-----RVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVP 349
K++ +G ASNV RVE ++ A + V Y G+ S +D+
Sbjct: 440 KLVKHLSGSASNVFGDRTRVERVAKGKTTPAEASSHVTKFYA--GKLKGSTQDDRAA--- 494
Query: 350 EQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANT 409
+ ++ ++N+P+ L+ I HL +FGLE I L F+S S M ++ T
Sbjct: 495 ------ALLDKVLNLPEPVTLCLSAMITHLTEFGLEHIFDLTKYFQSFSTRSHMCINGTT 548
Query: 410 LQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIA 469
L+ LEV RN+++ +E G+LL ++ T T +G R+LR+W+ PL D+ + R+ AV E+
Sbjct: 549 LESLEVYRNSTDHTEKGSLLWALDKTRTRFGQRMLRKWLGRPLLDKERLDDRVAAVEELF 608
Query: 470 ES 471
E+
Sbjct: 609 EN 610
>DICTYBASE|DDB_G0281683 [details] [associations]
symbol:msh3 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032302 "MutSbeta
complex" evidence=ISS;IBA] [GO:0032135 "DNA insertion or deletion
binding" evidence=ISS] [GO:0006312 "mitotic recombination"
evidence=ISS] [GO:0006310 "DNA recombination" evidence=ISS]
[GO:0000735 "removal of nonhomologous ends" evidence=ISS]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0281683 GO:GO:0005524
GenomeReviews:CM000152_GR GO:GO:0003684 EMBL:AAFI02000042
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 RefSeq:XP_001134558.1
STRING:Q1ZXH0 EnsemblProtists:DDB0232960 GeneID:8623184
KEGG:ddi:DDB_G0281683 OMA:ATRISHI Uniprot:Q1ZXH0
Length = 1428
Score = 911 (325.7 bits), Expect = 6.2e-126, Sum P(2) = 6.2e-126
Identities = 256/794 (32%), Positives = 395/794 (49%)
Query: 245 LGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXX---XGQPLSKQ--------- 292
+ VAV + TG+++Y F D +RS ++KQ
Sbjct: 618 ISFVAVSVKTGEIIYDTFKDNVMRSQLETILTHIKPSEILIPPTTTTVNKQKVNNGIGTN 677
Query: 293 -------TEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQN 345
T K L Y ++NVR + + +L +++ YE+ E +NN +
Sbjct: 678 HYYFSNLTSKCLKTYT-KSTNVRTQAMDSQLYDYEYSLGKLIDFYED--ESNNNNNNNNC 734
Query: 346 MDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQF-GLERIMCLGASFRSLSGSMEMT 404
DV + ++ +N + L + + +L +F I+ + ++F++ S +
Sbjct: 735 EDVLK------FVKSTLNKEQII--CLGILLSYLNEFIHFGSILKVESNFKAFRVSNHLV 786
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
L +T+ LE+L N S+ E G+L+ +MN T T GSR+ W+ PL LI R DA
Sbjct: 787 LPHSTIVNLELLVNESDNKEKGSLIWLMNRTSTFSGSRMFINWICKPLNQLELIKERQDA 846
Query: 465 VSEIAESM--GSYRTSESVGQHDEKNSDVTIVEPQFYY-ILSSVLTSLGRSPDIQRGITR 521
V E+ + S + D+ + YY + + L +QR I
Sbjct: 847 VEELVNGIKTNSPPIVSIISLFKSHIPDLQRNLSRIYYKVQCTPKEFLNTMTSLQR-IVE 905
Query: 522 IFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAV 581
+F + +L + +LQ + DG+ + L KR+ S+ +
Sbjct: 906 LFKEINNNNSSYKFNSTLLNSIFKLQNDNKDGD-SDSFDYIGGEDKLSKRIKYFLSN--I 962
Query: 582 IGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641
+ AK TV D+ +L + ++ ++ ++ ++ ++E +++ RK+L
Sbjct: 963 NKETAKEYGTVG---CDKSNLW----VDLEKYEKIRETKEKIEQVEKEFKNVLKNIRKEL 1015
Query: 642 GMRNLEF--MSVSGITHLIELPANFK-VPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
+LE+ M G+ +L+ELP +FK VP +W KVNST+K RYH+PEVL L L+ +
Sbjct: 1016 SKPSLEYHHMPGLGLEYLLELPPSFKAVPKSWIKVNSTQKMARYHAPEVLEQLKILSQSR 1075
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
E L I + +W SFL EF Y+ F S + ++RP FV + +
Sbjct: 1076 ETLKIQSQESWISFLGEFSVDYSLFSNFVNKISNLDCLFSLAKVSSLEGYIRPQFVKEKK 1135
Query: 759 PVQIHICSGRHPVLDTILLDN---FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALI 815
I I +GRHPV++ IL + +VPN L IITGPNMGGKS +RQ ALI
Sbjct: 1136 DGGIQIENGRHPVVEAILSGSDGSYVPNTIELRESACKSMIITGPNMGGKSSLLRQTALI 1195
Query: 816 GIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLV 875
IMAQVG FVPA+S L V D IYTRMGA DSI G+STF EL E S IL+N T +LV
Sbjct: 1196 VIMAQVGCFVPATSCSLSVFDAIYTRMGARDSIGTGKSTFFIELEETSDILKNSTQNTLV 1255
Query: 876 IVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSY 935
I+DELGRGTST+DGVAIAY+TL Y++E KC LFVTHYP +A ++ ++ VG +H+ Y
Sbjct: 1256 ILDELGRGTSTNDGVAIAYSTLKYIVEVMKCYCLFVTHYPLLAQLELQYPTQVGNFHMGY 1315
Query: 936 LTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
L K + V +LYK+V G +++S+G +A+LA LP I+ A + +++
Sbjct: 1316 L-EEKQDQQLQKSVIPKVIFLYKLVKGAAQNSYGLNIARLAGLPMEVIADALKKSNEMKE 1374
Query: 996 EVSSRVQNRSAKRD 1009
++ R N S +D
Sbjct: 1375 SITRRA-NLSDGKD 1387
Score = 361 (132.1 bits), Expect = 6.2e-126, Sum P(2) = 6.2e-126
Identities = 85/206 (41%), Positives = 119/206 (57%)
Query: 77 PTPS-SQTTHNKK---YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI 132
PT S+ + KK YTPLEQQ + +K + PD +LM+E GYK++FFGEDAE+A KVL I
Sbjct: 437 PTKGGSKASAKKKGPAYTPLEQQYIAIKKENPDTVLMVECGYKYKFFGEDAEVANKVLNI 496
Query: 133 YAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSA 192
Y+++ NF+ SIPT RL H+RRLV AG+KVG+V+QTETAA+KA K+ PF R L+
Sbjct: 497 YSYVAKNFLNCSIPTQRLFFHLRRLVMAGYKVGIVEQTETAALKAISSSKSQPFERKLTR 556
Query: 193 LYTKATLXXXXXXXXXXXXX--XXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVR------ 244
+YT +T S Y + + +V K + +G D
Sbjct: 557 VYTSSTFIDDDIDDQLTSSSPQFLVSFYESTPKNKNDDVIKKQRDNEEEGIDSSNESSTS 616
Query: 245 -LGVVAVEISTGDVVYGEFNDGFLRS 269
+ VAV + TG+++Y F D +RS
Sbjct: 617 TISFVAVSVKTGEIIYDTFKDNVMRS 642
>ZFIN|ZDB-GENE-060526-307 [details] [associations]
symbol:msh3 "mutS homolog 3 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-060526-307 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GeneTree:ENSGT00550000074949
EMBL:CR381619 IPI:IPI00805026 Ensembl:ENSDART00000092285
Uniprot:F1QCN5
Length = 950
Score = 670 (240.9 bits), Expect = 5.6e-123, Sum P(2) = 5.6e-123
Identities = 159/403 (39%), Positives = 238/403 (59%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
+L S+ + L R PD++RG+ I+H+ EF ++ ++ +LQ L +
Sbjct: 566 VLPSIQSLLTRLPDLERGLCSIYHKR----EFYLIISSLSRLNVELQAL------MPAIQ 615
Query: 561 SKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARAR 620
S+ L S LLK L+L +P ++ A L +N++AA G+ M + F + + +
Sbjct: 616 SQ-LSSPLLKTLLL--DTPQLLSPAHNFLKVLNEKAAKTGNKTE-MFVDLTDFPVIRKTK 671
Query: 621 KAVQSAKEELDSLINMCRKQLGMRN--LEFMSVSGITHLIELPANFK--VPLNWAKVNST 676
+ ++S LD + + +L ++N L++ +VSG LIE+ + VP +W K++ST
Sbjct: 672 EEIESVL--LDIMEHRREVRLLLKNPSLDYTTVSGQQFLIEVKNSMLSIVPADWVKISST 729
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
K RYH+P ++ +L E+L I C W +FL+ FG +Y
Sbjct: 730 KVFGRYHTPFIVEKHRRLQQLREQLVIDCNHEWINFLQLFGDHYYILRKAVCHLATMDCL 789
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTNLHAEREYC 794
++ N+ RP ++ E QI I +G+HPV+ +++ D +VPNDT+L + +
Sbjct: 790 FSLAQVAKENNYCRPEVLE--EKSQILITAGKHPVITSLMGDQDQYVPNDTHLQGDGKRA 847
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YIRQVAL+ IMAQ+GSFVPA A + ++DGIY RMGASD+I +GRST
Sbjct: 848 MIITGPNMGGKSSYIRQVALVTIMAQLGSFVPAREASVGIVDGIYVRMGASDNISRGRST 907
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL 897
F+EEL E S +L T++SLVI+DELGRGTSTHDG+AIAYATL
Sbjct: 908 FMEELLETSDVLACATSRSLVILDELGRGTSTHDGIAIAYATL 950
Score = 598 (215.6 bits), Expect = 5.6e-123, Sum P(2) = 5.6e-123
Identities = 165/439 (37%), Positives = 234/439 (53%)
Query: 79 PSSQTTHNKK-YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLD 137
PS K YTPLE+Q +E+K ++ D +L +E GYK+RFFGEDAE+AAK L I HLD
Sbjct: 177 PSVSNRRTKTIYTPLEEQYMEIKKQHVDTVLCVECGYKYRFFGEDAEIAAKELNITCHLD 236
Query: 138 HNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKA 197
HNFMTASIPT RL VHVRRLV+ G+KVGVVKQTET AIKA K+ F R L ALYTK+
Sbjct: 237 HNFMTASIPTHRLFVHVRRLVSQGYKVGVVKQTETTAIKASSANKSSLFSRQLHALYTKS 296
Query: 198 TLXXXXXXXXXXXXXXXXSNYLVCVVDDDGN--VGKIRNGVFGDGFDVRLGVVAVEISTG 255
TL + VV D GN + + ++ +G+V V+ S G
Sbjct: 297 TLVGEDVNPLLKLGDLEQAED---VVQDSGNNYLMCVSESFDKQSKELTVGMVVVQPSIG 353
Query: 256 DVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML--LAYAGPASNVRVECAS 313
DV+ F D S LS+ TE++L +A + ++ R+
Sbjct: 354 DVMVDCFKDNMSHSELESRILRIQPVEILVPSDLSETTERLLRNIALSSVQADDRIRIEK 413
Query: 314 RDC--FIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQA 371
R+ F AL+ + Y G + + N E+G++ M + +
Sbjct: 414 RESAMFEYPTALSIIKDFYRG-GPHSAARNH-------EKGSYSIC----MGLESPIICC 461
Query: 372 LALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEYGTLLH 430
L I++L +F LE+I+ +SF+ LS + M LSA T++ LE+L N + GS G+LL
Sbjct: 462 LGPVIQYLTEFKLEKILLCSSSFKRLSSDPDHMLLSAATMKNLEILCNQTTGSVKGSLLW 521
Query: 431 IMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTS-ESVGQH--DEK 487
+++HT T++G RLLR+WV+ PL I AR +AV+EI S S S +S+ D +
Sbjct: 522 VLDHTQTLFGKRLLRKWVSQPLKSVIDIQARQEAVAEILSSESSVLPSIQSLLTRLPDLE 581
Query: 488 NSDVTIVEP-QFYYILSSV 505
+I +FY I+SS+
Sbjct: 582 RGLCSIYHKREFYLIISSL 600
>UNIPROTKB|Q7SD11 [details] [associations]
symbol:msh-3 "DNA mismatch repair protein msh-3"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0008094
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 GO:GO:0000735 HOGENOM:HOG000029776 KO:K08736
OMA:KRTKSIY OrthoDB:EOG42NN7M EMBL:AABX02000089 RefSeq:XP_963874.1
ProteinModelPortal:Q7SD11 STRING:Q7SD11
EnsemblFungi:EFNCRT00000009637 GeneID:3880023 KEGG:ncr:NCU08115
Uniprot:Q7SD11
Length = 1145
Score = 576 (207.8 bits), Expect = 2.3e-118, Sum P(4) = 2.3e-118
Identities = 150/444 (33%), Positives = 226/444 (50%)
Query: 75 PIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-- 132
P T + K TP+E Q +E+K K+ D LL++EVGYKFRFFGEDA +AA+ L I
Sbjct: 172 PKTTAKKKGAKTGKLTPMELQFLEIKRKHMDTLLIVEVGYKFRFFGEDARIAARELSIVC 231
Query: 133 ------Y------AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGP 180
Y AHLD F +ASIP RL VH +RLV AG+KVGVV+Q ETAA+K G
Sbjct: 232 IPGKFRYDEHPSEAHLDR-FASASIPVHRLPVHAKRLVAAGYKVGVVRQIETAALKKAGD 290
Query: 181 GKAGPFGRGLSALYTKATLXXXXXXXXXXXXXXXXSN--YLVCVVDDDGNVGKIRNGVFG 238
+ PF R L+ +YTK T S+ YL+C+ + G+ G
Sbjct: 291 NRNAPFVRKLTNVYTKGTYIDETGELDQPGETTGASSGGYLLCLTETPAK------GM-G 343
Query: 239 DGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLL 298
V +G++AV+ +TGD++Y EF DGF+R LSK T+K++
Sbjct: 344 TDEKVNVGIIAVQPATGDIIYDEFEDGFMRREIETRLLHISPCEFLIVGDLSKATDKLIQ 403
Query: 299 AYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSA- 357
+G ++NV G + E + + M ++ SN D + + RSA
Sbjct: 404 HLSGSSTNV----------FGDKSRVERVPKSKTMAAESYSNVTDFYAGKAKDSDERSAA 453
Query: 358 -IEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVL 416
+ ++ +P+ + L+ I HL ++GL+ I L F+S S M ++ TL+ LEV
Sbjct: 454 LLNKVLKLPEAVMICLSAMITHLTEYGLQHIFDLTKYFQSFSTRQHMLINGTTLESLEVY 513
Query: 417 RNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYR 476
RN ++ SE G+LL ++ T T +G RLLR+W+ PL D+ + R+ AV E+ + + +
Sbjct: 514 RNATDHSEKGSLLWALDKTHTRFGQRLLRKWIGRPLLDQQRLEERVSAVEELLNNQSTAK 573
Query: 477 TSESVGQHDEKNSDVTIVEPQFYY 500
+ V +D+ + YY
Sbjct: 574 VDKLVNMLKSIKADLERSLIRIYY 597
Score = 394 (143.8 bits), Expect = 2.3e-118, Sum P(4) = 2.3e-118
Identities = 78/148 (52%), Positives = 105/148 (70%)
Query: 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTR 841
PN T+ + Q+ITGPNMGGKS Y R VAL+ ++AQ+GSFVPA+S L + D I+TR
Sbjct: 865 PNPTSPSGKPALAQLITGPNMGGKSSYTRAVALLVLLAQIGSFVPATSMSLTLSDAIFTR 924
Query: 842 MGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901
MGA D++ +G STF+ E++E + ILR T +SLV++DELGRGTSTHDG AIA A L+Y++
Sbjct: 925 MGARDNLFKGESTFMVEVSETAAILRQATPRSLVVLDELGRGTSTHDGRAIAGAVLEYVV 984
Query: 902 EHKKCMVLFVTHYPKIADIKTKFTGSVG 929
C++LFVTHY +A + T G
Sbjct: 985 RDVGCLMLFVTHYQDLAGVAEGLTVGEG 1012
Score = 262 (97.3 bits), Expect = 2.3e-118, Sum P(4) = 2.3e-118
Identities = 73/286 (25%), Positives = 133/286 (46%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEY-REKVT 560
L ++L S+ D++R + RI++ T E ++ +Q LQ++ EY R K
Sbjct: 577 LVNMLKSI--KADLERSLIRIYYGKCTRPELLSTLQT-------LQKISF--EYARVKSP 625
Query: 561 SKT-LHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARA 619
+ T S LL I+T P++ LS +N EAA + D + + +++
Sbjct: 626 ADTGFSSTLLTSAIMTL--PSISPMVTAHLSKINAEAARKDDKY-AFFLEQHETEDISEH 682
Query: 620 RKAVQSAKEELDSLINMCRKQLGMR-NLEFMSVSGITHLIELP-ANFK-VPLNWAKVNST 676
+ + + +++LD + K LG + + +++V+GI +LIE+P + K VP +WAK++ T
Sbjct: 683 KLGIAAVEQDLDEHRSEAAKDLGKKVPVNYVTVAGIEYLIEVPNTDLKRVPASWAKISGT 742
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
KK R+H+P VL + + E L C A+ L + G Y
Sbjct: 743 KKVSRFHTPTVLRLIAERDQHKESLASACDQAFSDLLSQIAGEYQPLRDAVSSLSTLDCL 802
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
+ + +P F+ P + I GRHP+ + +L + ++P
Sbjct: 803 LSLSTVAALPGYTKPTFLPSSHPSFLSITEGRHPIAEHLLPNGYIP 848
Score = 106 (42.4 bits), Expect = 2.3e-118, Sum P(4) = 2.3e-118
Identities = 19/55 (34%), Positives = 36/55 (65%)
Query: 946 DSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
D ++++T+LY + PGV+ S+G VA+LA++P + A +++LE EV ++
Sbjct: 1055 DKDEEEEITFLYDLAPGVAHRSYGLNVARLARIPRKVLEVAARKSSELEKEVRAK 1109
Score = 38 (18.4 bits), Expect = 6.5e-58, Sum P(3) = 6.5e-58
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 672 KVNSTKKTIRYHSPEVLTALDQL 694
+V+ T +R +P L LD+L
Sbjct: 941 EVSETAAILRQATPRSLVVLDEL 963
Score = 37 (18.1 bits), Expect = 3.4e-37, Sum P(3) = 3.4e-37
Identities = 11/34 (32%), Positives = 16/34 (47%)
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFG 717
S E AL L E ++C +A + L E+G
Sbjct: 447 SDERSAALLNKVLKLPEAVMICLSAMITHLTEYG 480
>POMBASE|SPAC8F11.03 [details] [associations]
symbol:msh3 "MutS protein homolog 3" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0007534 "gene conversion at
mating-type locus" evidence=IMP] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0061500 "gene conversion at
mating-type locus, termination of copy-synthesis" evidence=IMP]
[GO:0006298 "mismatch repair" evidence=TAS] [GO:0000403 "Y-form DNA
binding" evidence=ISO] [GO:0000404 "loop DNA binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPAC8F11.03
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006281
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0032135 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0000406 GO:GO:0007534 OrthoDB:EOG42NN7M EMBL:X61306
PIR:S22569 ProteinModelPortal:P26359 STRING:P26359 PRIDE:P26359
NextBio:20804407 Uniprot:P26359
Length = 993
Score = 663 (238.4 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 143/400 (35%), Positives = 227/400 (56%)
Query: 615 EVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFK-VPLNWAKV 673
E+ + ++ + E+D + R L NLEF + IE+ K +P +W K+
Sbjct: 578 EIRELKMSILMVRTEMDFHLQELRDYLEYPNLEFSIWGNVKFCIEVSKGCKKIPPDWIKL 637
Query: 674 NSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXX 733
+ST+ R+H+P++ + L +L+ E LTI + SFL +Y E
Sbjct: 638 SSTRSLFRFHTPKIQSLLIELSSHEENLTISSEKIYRSFLSRISEHYNELRNVTTVLGTL 697
Query: 734 XXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREY 793
S + RP F D + + IH RHP+++ + +FVPN +L ++
Sbjct: 698 DCLISFARISSQSGYTRPEFSD--KELLIH--ESRHPMIELLSDKSFVPNHIHLSSDGVR 753
Query: 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRS 853
C +ITGPNMGGKS +++Q+AL IMAQ G FVPA SA L + D I RMG+SD++ S
Sbjct: 754 CLLITGPNMGGKSSFVKQLALSAIMAQSGCFVPAKSALLPIFDSILIRMGSSDNLSVNMS 813
Query: 854 TFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913
TF+ E+ E +L T +S+VI+DELGRGTST DG AI+YA L YL ++ K +LFVTH
Sbjct: 814 TFMVEMLETKEVLSKATEKSMVIIDELGRGTSTIDGEAISYAVLHYLNQYIKSYLLFVTH 873
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
+P + ++ +F G + +H+ YL S + ++ Q +++LYK+VPGV+ S+G VA
Sbjct: 874 FPSLGILERRFEGQLRCFHMGYLKSKE---DFETSVSQSISFLYKLVPGVASKSYGLNVA 930
Query: 974 QLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVK 1013
++A +P S +SRAT I+ E + +R+A++++ ++
Sbjct: 931 RMAGIPFSILSRATEISENYEKK------HRNARKNVFIR 964
Score = 512 (185.3 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 126/397 (31%), Positives = 202/397 (50%)
Query: 80 SSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHN 139
S T +TPLEQQ +ELK Y + +L IEVGYKFRFFG+DA++A++VLGI + +HN
Sbjct: 94 SKPTKQKSVFTPLEQQYLELKKNYQETILAIEVGYKFRFFGKDAKIASEVLGISCYFEHN 153
Query: 140 FMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
F+ AS+P++R++ H+ RL+N G KV VV+QTETAA+K+ + F R ++ + TK T
Sbjct: 154 FLNASVPSYRIDYHLERLINFGLKVAVVRQTETAALKSTSSSRNTLFDRRVARVLTKGTT 213
Query: 200 XXXXXXXXXXXXXXX--XSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDV 257
S +++CV D+ K ++G V++G++A+++S+G
Sbjct: 214 LDDSFFRFEQTQHGTLQASQFILCVADNVDK-SKAKSG------RVQVGLIAIQLSSGTT 266
Query: 258 VYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCF 317
VY F D FLRS LS ++ +L Y C R
Sbjct: 267 VYDHFQDDFLRSELQTRLSHFQPCELIYSNKLSSESVALLNHYVSTEKT----CG-RVVR 321
Query: 318 IGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIR 377
+ +V EN+ + S + E H +E + ++ L++ L + I
Sbjct: 322 VQHAVQQDVKLALENLQDFFSSKCIMSGSKIIEL--H---MEKVKSLHSLSIICLDMAIS 376
Query: 378 HLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLT 437
+L +F LE + ++ M LS L+ LE+ N ++ + G+L +++ T T
Sbjct: 377 YLMEFSLEDLFVASNFYQPFDSISSMVLSKQALEGLELFVNQTDHTPVGSLFWVLDRTYT 436
Query: 438 IYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
+G R+L+RW+ PL D+ I RLDAV E+A + S
Sbjct: 437 RFGQRMLQRWLQKPLVDKENIIERLDAVEELAFNSNS 473
Score = 48 (22.0 bits), Expect = 1.7e-113, Sum P(3) = 1.7e-113
Identities = 7/24 (29%), Positives = 18/24 (75%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHR 525
+ ++ L R PD+++G++RI+++
Sbjct: 475 VQAIRKMLYRLPDLEKGLSRIYYQ 498
Score = 40 (19.1 bits), Expect = 1.4e-62, Sum P(2) = 1.4e-62
Identities = 15/69 (21%), Positives = 29/69 (42%)
Query: 559 VTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ S LH + ++ S PA+ + S+ N D+G + I N + R
Sbjct: 17 ILSDNLHEGAISEDMVALSGPAIELLENNVGSSKNSYQEDEG---SSSIDENAPLISIKR 73
Query: 619 ARKAVQSAK 627
R+ +++ K
Sbjct: 74 KRR-IRTVK 81
Score = 39 (18.8 bits), Expect = 1.8e-62, Sum P(2) = 1.8e-62
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 593 NKEAADQGDLLNLMIISNGQFSEVARARKAVQS-AKEELDSL 633
NK +++ LLN + + V R + AVQ K L++L
Sbjct: 296 NKLSSESVALLNHYVSTEKTCGRVVRVQHAVQQDVKLALENL 337
Score = 37 (18.1 bits), Expect = 6.7e-45, Sum P(3) = 6.7e-45
Identities = 9/17 (52%), Positives = 10/17 (58%)
Query: 582 IGKAAKLLSTVNKEAAD 598
I K AKLL +N E D
Sbjct: 963 IRKVAKLLMILNAEEID 979
>UNIPROTKB|E1C1F8 [details] [associations]
symbol:MSH3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0019899 "enzyme
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032357 "oxidized purine DNA binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045910
"negative regulation of DNA recombination" evidence=IEA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074949 EMBL:AADN02047884 EMBL:AADN02047885
EMBL:AADN02047886 EMBL:AADN02047887 EMBL:AADN02047888
EMBL:AADN02047889 IPI:IPI00586936 Ensembl:ENSGALT00000025135
OMA:LLLDCQR Uniprot:E1C1F8
Length = 598
Score = 837 (299.7 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 192/553 (34%), Positives = 309/553 (55%)
Query: 489 SDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQ 548
S++ + E + + ++L L PD++RG+ +FH+ + EF ++ + ++Q
Sbjct: 57 SEILLSESSVFGQIQNLLCKL---PDLERGLCSVFHKKCSTQEFFLIVSTLSRLDSEIQA 113
Query: 549 LHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMII 608
L V S L +ALL+ P ++ L +N+EAA GD L
Sbjct: 114 LV--PVIHSHVKSPLLQNALLE-------IPELLSPVKHYLKILNEEAAKTGDKTQLFKD 164
Query: 609 SNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--KV 666
F + + ++ + ++ + RKQ+ + E+++VSG L+E+ + V
Sbjct: 165 LT-DFPVIRKKKEEILDVLSKIQLHLLEIRKQIKNPSAEYVTVSGQEFLVEVKNSHISSV 223
Query: 667 PLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXX 726
P NW V+STK R+HSP + L E+L + C A W FL F +Y
Sbjct: 224 PSNWVMVSSTKAVSRFHSPFITENYRHLNQLREQLVLDCGAEWLRFLDHFSEHYHTVSKA 283
Query: 727 XXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPND 784
++ ++ RPV D+ + +I I +GRHPV+D +L D +VPN
Sbjct: 284 IGHLATIDCLFSLAQAAKQGDYCRPVVKDNQQ--EIIIKNGRHPVIDVLLGEQDQYVPNT 341
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
TNL + E IITGPNMGGKS YI+QVALI +MAQ+GS+VPA + + ++DGI+TRMGA
Sbjct: 342 TNLSRDGERVMIITGPNMGGKSSYIKQVALITVMAQIGSYVPAEESTVGIVDGIFTRMGA 401
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
+D+I +GRSTF+EEL + + I+R T++SLVI+DELGRGTSTHDG+AIAYATL++ +
Sbjct: 402 ADNIYKGRSTFMEELTDTAEIIRRATSRSLVILDELGRGTSTHDGIAIAYATLEHFITDV 461
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT----SHKVMGPMDSKSDQDVTYLYKVV 960
+ + LFVTHYP + +++ + G VG YH+++L S + G + ++ + VT+LY++
Sbjct: 462 ESLTLFVTHYPSVCELENVYPGKVGNYHMAFLVNKEESAEQKGSEEEENPEFVTFLYQIT 521
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSD-QEQ 1019
GV+ S+G VA+LA +P + +A + +LE V+ + + + + K++D QE
Sbjct: 522 KGVTARSYGLNVAKLADIPEEILKKAAHKSKELERLVNVKRKKLKSFAEAW-KINDFQEL 580
Query: 1020 EAQENM-PVSPES 1031
+ N+ VS +S
Sbjct: 581 QKWRNIFQVSSDS 593
Score = 138 (53.6 bits), Expect = 4.2e-96, Sum P(2) = 4.2e-96
Identities = 29/65 (44%), Positives = 44/65 (67%)
Query: 410 LQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIA 469
++ LE+L+N ++ G+LL +++HT T +G R L++WV PL + I+ARLDAVSEI
Sbjct: 1 MKNLEILQNQTDLKTKGSLLWVLDHTKTSFGRRRLKKWVIQPLMKCSEINARLDAVSEIL 60
Query: 470 ESMGS 474
S S
Sbjct: 61 LSESS 65
>SGD|S000000688 [details] [associations]
symbol:MSH3 "Mismatch repair protein" species:4932
"Saccharomyces cerevisiae" [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IPI] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IEA;IDA] [GO:0000735 "removal of
nonhomologous ends" evidence=IGI;IMP;TAS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0032135 "DNA insertion or deletion
binding" evidence=IDA] [GO:0006310 "DNA recombination"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000000688 GO:GO:0005524 GO:GO:0005737
GO:GO:0003684 EMBL:X59720 EMBL:BK006937 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032135 GO:GO:0000710 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0032302 GO:GO:0000406 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M EMBL:X64954 EMBL:M96250
PIR:S19508 RefSeq:NP_010016.2 ProteinModelPortal:P25336 SMR:P25336
DIP:DIP-2422N IntAct:P25336 MINT:MINT-633647 STRING:P25336
PaxDb:P25336 PeptideAtlas:P25336 PRIDE:P25336 EnsemblFungi:YCR092C
GeneID:850454 KEGG:sce:YCR092C CYGD:YCR092c
GeneTree:ENSGT00550000074949 NextBio:966078 Genevestigator:P25336
GermOnline:YCR092C Uniprot:P25336
Length = 1018
Score = 612 (220.5 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 154/498 (30%), Positives = 254/498 (51%)
Query: 509 LGRSPDIQRGITRIFHRTATPSE-FIAVMQAILYAGK-QLQQLHIDGEYREKVTSKTLHS 566
L +PD+ R + RI + T + E + + Q + ++ Q ++ ++ S
Sbjct: 497 LNHTPDLLRTLNRIMYGTTSRKEVYFYLKQITSFVDHFKMHQSYLSEHFKSSDGRIGKQS 556
Query: 567 ALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGD----LLNLMIISNGQFSE-VARARK 621
LL RL + + L+ +N A + + +++ ++N SE + + ++
Sbjct: 557 PLLFRLFSELNELLSTTQLPHFLTMINVSAVMEKNSDKQVMDFFNLNNYDCSEGIIKIQR 616
Query: 622 AVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK-VPLNWAKVNSTKKT 679
+S + +L + RK L L F + +LIE+ + K +P +W KVN+TK
Sbjct: 617 ESESVRSQLKEELAEIRKYLKRPYLNFRDE--VDYLIEVKNSQIKDLPDDWIKVNNTKMV 674
Query: 680 IRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXX 739
R+ +P +L + L + FL + Y E
Sbjct: 675 SRFTTPRTQKLTQKLEYYKDLLIRESELQYKEFLNKITAEYTELRKITLNLAQYDCILSL 734
Query: 740 XXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITG 799
S N N+VRP FV+ + + + R+P+++++ + ++VPND + E IITG
Sbjct: 735 AATSCNVNYVRPTFVNGQQAIIAK--NARNPIIESLDV-HYVPNDIMMSPENGKINIITG 791
Query: 800 PNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEEL 859
PNMGGKS YIRQVAL+ IMAQ+GSFVPA L + + + TR+GA D I G STF E+
Sbjct: 792 PNMGGKSSYIRQVALLTIMAQIGSFVPAEEIRLSIFENVLTRIGAHDDIINGDSTFKVEM 851
Query: 860 NEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC-MVLFVTHYPKIA 918
+ +IL+NC +SL+++DE+GRGT THDG+AI+YA + Y E C ++LF TH+P +
Sbjct: 852 LDILHILKNCNKRSLLLLDEVGRGTGTHDGIAISYALIKYFSELSDCPLILFTTHFPMLG 911
Query: 919 DIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978
+IK+ + YH+ Y+ K + V +LYK+ G++ +S+G VA+LA+L
Sbjct: 912 EIKSPL---IRNYHMDYVEEQKT-----GEDWMSVIFLYKLKKGLTYNSYGMNVAKLARL 963
Query: 979 PPSCISRATVIAAKLEAE 996
I+RA I+ +L E
Sbjct: 964 DKDIINRAFSISEELRKE 981
Score = 234 (87.4 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 65/193 (33%), Positives = 98/193 (50%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA------------- 134
K TPL++QV +LK + D +L+I VGYK++ F EDA +++L I
Sbjct: 131 KLTPLDKQVKDLKMHHRDKVLVIRVGYKYKCFAEDAVTVSRILHIKLVPGKLTIDESNPQ 190
Query: 135 HLDHN-FMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPG--KAGPFGRGLS 191
+H F S P RLNVH+ RLV+ KV VV+Q ET+AIK H PG K+ F R +S
Sbjct: 191 DCNHRQFAYCSFPDVRLNVHLERLVHHNLKVAVVEQAETSAIKKHDPGASKSSVFERKIS 250
Query: 192 ALYTKATLXXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVE 251
++TKAT +N + + D + GK+ + +++V
Sbjct: 251 NVFTKATFGVNSTFVLRGKRILGDTNS-IWALSRDVHQGKV----------AKYSLISVN 299
Query: 252 ISTGDVVYGEFND 264
++ G+VVY EF +
Sbjct: 300 LNNGEVVYDEFEE 312
Score = 158 (60.7 bits), Expect = 7.1e-89, Sum P(3) = 7.1e-89
Identities = 36/125 (28%), Positives = 68/125 (54%)
Query: 359 EGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN 418
E I P L ++ ++ H+ ++ E++M + + + + + M L N+LQ L++ +
Sbjct: 375 EKIQLSPSL-IRLVSKLYSHMVEYNNEQVMLIPSIYSPFASKIHMLLDPNSLQSLDIFTH 433
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTS 478
+ G + G+L +++HT T +G R+LR W+ PL D + I RLDA+ I + +
Sbjct: 434 D--GGK-GSLFWLLDHTRTSFGLRMLREWILKPLVDVHQIEERLDAIECITSEINNSIFF 490
Query: 479 ESVGQ 483
ES+ Q
Sbjct: 491 ESLNQ 495
Score = 39 (18.8 bits), Expect = 4.9e-56, Sum P(2) = 4.9e-56
Identities = 21/82 (25%), Positives = 36/82 (43%)
Query: 313 SRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNM-DVPEQGN--HRSAIEGIMNMPDLAV 369
SRD G A ++S+ N GE E+ N+ D Q + IE ++N DL +
Sbjct: 282 SRDVHQGKVAKYSLISVNLNNGEVVYDEFEEPNLADEKLQIRIKYLQPIEVLVNTDDLPL 341
Query: 370 QA------LALTIRHLKQFGLE 385
++ + H +++ LE
Sbjct: 342 HVAKFFKDISCPLIHKQEYDLE 363
Score = 38 (18.4 bits), Expect = 5.4e-14, Sum P(2) = 5.4e-14
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 1053 NLKFATHDDNPAKSFQFLKHARS 1075
+L THD F L H R+
Sbjct: 427 SLDIFTHDGGKGSLFWLLDHTRT 449
>UNIPROTKB|Q759V4 [details] [associations]
symbol:MSH3 "DNA mismatch repair protein MSH3"
species:284811 "Ashbya gossypii ATCC 10895" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0005737 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0008094 EMBL:AE016817 GenomeReviews:AE016817_GR
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000710 HSSP:Q56215
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GO:GO:0000735 KO:K08736 OMA:KRTKSIY
RefSeq:NP_984265.1 ProteinModelPortal:Q759V4 STRING:Q759V4
EnsemblFungi:AAS52089 GeneID:4620427 KEGG:ago:AGOS_ADR168C
HOGENOM:HOG000057130 OrthoDB:EOG42NN7M PhylomeDB:Q759V4
Uniprot:Q759V4
Length = 1032
Score = 596 (214.9 bits), Expect = 3.1e-85, Sum P(3) = 3.1e-85
Identities = 129/336 (38%), Positives = 198/336 (58%)
Query: 666 VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXX 725
VP++W KV STK R+ +P + +L E L + ++SF+K G Y
Sbjct: 666 VPVDWVKVASTKAVSRFQTPGTAKLVAKLQYHKELLQDLALQEYESFIKRITGEYTSLRK 725
Query: 726 XXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDT 785
S N ++VRP F + P I++ +GR+P+++++ + ++PND
Sbjct: 726 AILHLSTYDCILSLAATSCNVDYVRPKF--NTAPQCINVINGRNPIIESLDV-RYMPNDV 782
Query: 786 NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGAS 845
NL+ E + IITGPNMGGKS YIRQVAL+ IMAQ+G +VPA AE + D I+TR+GA
Sbjct: 783 NLNREGKKIMIITGPNMGGKSSYIRQVALLVIMAQIGCYVPAQEAEFSIFDQIFTRIGAY 842
Query: 846 DSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HK 904
D++ + STF E+ E ILR+ T SL+++DE+GRGT THDG++I+YA L Y +E H
Sbjct: 843 DNLLRNDSTFKIEMTEMVQILRSSTENSLLLLDEVGRGTGTHDGISISYALLRYFIELHN 902
Query: 905 KC-MVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGV 963
C ++LF+THY + I++ +G YH+SY+ + P ++ V +LYK+ G
Sbjct: 903 ACPLILFITHYASLGSIRSPI---LGNYHMSYIEEKR---P--GENWPSVVFLYKLKEGR 954
Query: 964 SESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSS 999
+ +S+G VA+LA + I+RA I+ L+ E+ S
Sbjct: 955 AHNSYGLNVAKLADIQTGIINRAYKISTMLKQEMES 990
Score = 213 (80.0 bits), Expect = 3.1e-85, Sum P(3) = 3.1e-85
Identities = 51/134 (38%), Positives = 78/134 (58%)
Query: 79 PSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY----- 133
P S+ + T L+QQ +LK ++ D +L + VGYK++FF EDA M ++VL I
Sbjct: 130 PRSKRAKPNRLTELDQQFKDLKLQHMDKVLAVRVGYKYKFFAEDAVMVSRVLQIKLVPGK 189
Query: 134 --AH----LDHN---FMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAG 184
H DH F +IP RL VH++RL++ KVGVV+QTET+A+K + +
Sbjct: 190 LTVHETDPADHKHKKFAYCTIPDTRLEVHLQRLMHHNLKVGVVEQTETSAVKKNSGTSSS 249
Query: 185 PFGRGLSALYTKAT 198
F R ++ ++T+AT
Sbjct: 250 VFSREVTNIFTRAT 263
Score = 164 (62.8 bits), Expect = 3.1e-85, Sum P(3) = 3.1e-85
Identities = 43/159 (27%), Positives = 81/159 (50%)
Query: 318 IGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQ--GNHRSAIEGIMNMPDLAVQALALT 375
+G G +E+ ++ D ++ N + + + E+ A +G N+P AL L
Sbjct: 339 VGDGLGSEIEKVFHTSDSD-ITLNRIELVGLYEEIFSEPHPAFKG--NVP--LQTALMLV 393
Query: 376 IRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHT 435
+L F E ++ +F+ M L ++ ++ L++ N+++ S G+LL +++HT
Sbjct: 394 HGYLTNFKNESLLFFKENFKPFCSKTHMILPSSAIESLDIFENSTDRSSKGSLLWVLDHT 453
Query: 436 LTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGS 474
T YG R L+ W+ PL + + I RLDAV I+ +G+
Sbjct: 454 RTNYGLRNLKNWIAKPLINIDQIQQRLDAVQCISTEVGN 492
Score = 37 (18.1 bits), Expect = 1.2e-23, Sum P(3) = 1.2e-23
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 650 SVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVC 705
SV + L E A+ LN AK+ + I + ++ T L Q +N + +C
Sbjct: 943 SVVFLYKLKEGRAHNSYGLNVAKLADIQTGIINRAYKISTMLKQEMESNSSIAAIC 998
>CGD|CAL0000288 [details] [associations]
symbol:orf19.3608 species:5476 "Candida albicans" [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0000735 "removal of nonhomologous ends"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032135 "DNA insertion or deletion binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0000403 "Y-form DNA binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0005634 GO:GO:0006298 GO:GO:0030983
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0249 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HSSP:P23909 KO:K08736
RefSeq:XP_714452.1 RefSeq:XP_714501.1 ProteinModelPortal:Q59Y41
STRING:Q59Y41 GeneID:3643846 GeneID:3643889 KEGG:cal:CaO19.11091
KEGG:cal:CaO19.3608 Uniprot:Q59Y41
Length = 1037
Score = 639 (230.0 bits), Expect = 1.3e-77, Sum P(2) = 1.3e-77
Identities = 201/745 (26%), Positives = 358/745 (48%)
Query: 289 LSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDV 348
+S+Q + L Y P + + S + I G L + + N S + +N +
Sbjct: 286 ISRQELETRLLYLRPVEVIVITNGSSEQ-ISGPTLMTLKLINHNCNIIHKSGSPSENGNE 344
Query: 349 PEQGNHRSAIEGIMN--MPDLAVQALALT------------IRHLKQFGLERIMCLGASF 394
E N AIE IM+ + + V+ ++ + +L +F L I + +
Sbjct: 345 NENENENEAIEAIMSKYLNEKLVEYYSINFSIPIQQCFEYLLLYLNEFKLTNIFTIPENI 404
Query: 395 RSLSGSME-MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+ S + M L ANTL LE+ N ++ + G+L ++N+T TI+GSRLL++WV+ PL
Sbjct: 405 TNFQDSKKYMILPANTLNSLEIFTNTTDHTTKGSLFKLLNNTKTIFGSRLLQKWVSRPLV 464
Query: 454 DRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSP 513
I R A+ ++ +S H +V+ +S+ LT + +
Sbjct: 465 HIQDIKDRHQAIEDL----------QSEYNH--------VVDS-----ISNFLTKI-KYL 500
Query: 514 DIQRGITRI-FHRTATPSEFIAVMQAILYAG-KQLQQLHIDGEYREK-VTSKTLHSALLK 570
D++ +++I + T + + + + +Y LQ++ I + EK + S S+LL
Sbjct: 501 DLEGLLSKIHYSSTNNNNNNLRINRKQVYLLLSNLQEILILVQKFEKSIKSFKFKSSLLI 560
Query: 571 RL---ILTASSPAVIGKAAKLLSTVNKEAAD--QGDLLNLMIISNGQFSEVARARKAVQS 625
++ +LT S +I LS ++ D + F + + +
Sbjct: 561 QIFDELLTISQTDII-IIENFLSMIDLSFIDCKESSEQCRKFFKRNSFDSIELQYQNIAQ 619
Query: 626 AKEELDS-LINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLN-------WAKVNSTK 677
+++++ + + RK+LG L+++ G +LIE+ N + L+ + + ST+
Sbjct: 620 YQQQIEQEQLEIIRKELGNSKLKYVQKDGERYLIEIRNNQRDKLSKILDDKDYILIKSTQ 679
Query: 678 KTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXX 737
RY V L L E L C + +FLK+ Y F
Sbjct: 680 TITRYRKKSVTEYLKLLQYHEEMLIKTCDEEFQNFLKDLDSNYTLFYKIIKNLAIFDCLL 739
Query: 738 XXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAE--REYCQ 795
S N+ RP +DD + I + RHP ++ L N+V ND N++ E +
Sbjct: 740 SLTTTSSLPNYTRPTLIDDD--LTILVKQARHPTIEQ-LRPNYVANDININIEYDKNRVL 796
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
IITGPNMGGKS Y++ VAL+ +M Q+G ++P +A + + D I+ RMGA+D+I +G STF
Sbjct: 797 IITGPNMGGKSSYVKTVALLTVMTQIGCYLPCQNATMGIFDSIFIRMGANDNILKGYSTF 856
Query: 856 LEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK-KCMVLFVTHY 914
+ E+ + I+ + +SL+I+DE+GRGT T DG+++AY+ L YL+E + K +VLF+THY
Sbjct: 857 MMEMLQCKNIISMMSNRSLIILDEIGRGTGTIDGISLAYSILKYLIESEFKPLVLFITHY 916
Query: 915 PKIADIKTKFTGS-VGTYHVSYLT-SHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKV 972
P I ++ ++ V YH+ Y + G + ++ +LY + GV +S+G V
Sbjct: 917 PSIHVLEQEYPNQLVVNYHMGYQEIKNNTPGEIP-----EIIFLYNLCRGVVNNSYGLNV 971
Query: 973 AQLAQLPPSCISRATVIAAKLEAEV 997
A+LA + I +A ++ K+++++
Sbjct: 972 AKLAGISHDIIKQAYRVSEKVKSDI 996
Score = 214 (80.4 bits), Expect = 1.3e-77, Sum P(2) = 1.3e-77
Identities = 60/188 (31%), Positives = 95/188 (50%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-YAHLD---HNFMT 142
K+ TPLE+Q++EL ++ D +L+I++GYK++ FG +A +K+L I Y D F
Sbjct: 105 KRLTPLEKQILELTEQHQDKILLIQIGYKYKVFGINALKVSKILNIMYISNDIEDTRFHY 164
Query: 143 ASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKA-HGPGKAGP-FGRGLSALYTKATLX 200
SIP RL++H++R+++ G+KVGVVKQ E+ +K K+ R ++ +YTKAT
Sbjct: 165 CSIPDTRLHIHLQRILSHGYKVGVVKQIESTIVKQIEKTSKSSDVMRREVTGVYTKATYL 224
Query: 201 XXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYG 260
S+ D N V F +VAV+ G+V++
Sbjct: 225 GDESNENTKGSWDGLSSSSSSSSSDVPEYIVCINEVSEKQF----AIVAVQPLIGEVIFD 280
Query: 261 EFNDGFLR 268
F D R
Sbjct: 281 SFKDDISR 288
>POMBASE|SPCC285.16c [details] [associations]
symbol:msh6 "MutS protein homolog" species:4896
"Schizosaccharomyces pombe" [GO:0005524 "ATP binding" evidence=ISO]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=ISO]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPCC285.16c
GO:GO:0005829 GO:GO:0005524 GO:GO:0005634 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0006298 GO:GO:0043570
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677 EMBL:AF207839
PIR:T41262 RefSeq:NP_588344.1 ProteinModelPortal:O74502
STRING:O74502 EnsemblFungi:SPCC285.16c.1 GeneID:2539215
KEGG:spo:SPCC285.16c HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
NextBio:20800385 Uniprot:O74502
Length = 1254
Score = 599 (215.9 bits), Expect = 4.1e-72, Sum P(3) = 4.1e-72
Identities = 164/524 (31%), Positives = 260/524 (49%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSAL 568
L + PD++R I+R+ + P++F+ V++ QL E+ E V TL +
Sbjct: 745 LHKLPDLERLISRVHAGRSKPADFVRVLEGFQRINSAFDQLR--EEFME-VAEGTLLGEI 801
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKE 628
++ S+P + + N + A + + I G +E ++K K
Sbjct: 802 IQ------SAPNMKEELEAWTRAFNWQKASEEGVFEPEI---GFEAEYDTSQKYQSELKN 852
Query: 629 ELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVL 688
EL +L+ +KQL +L F ++ + +E+P++ KVP+NW K++ TKKT RY++ E+
Sbjct: 853 ELYALLEQYKKQLRCSSLNFKNIGKEVYQVEVPSDVKVPVNWCKMSGTKKTNRYYNDELR 912
Query: 689 TALDQLALANE-ELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXX--XXXXXXXXSRN 745
+ +L A E L I+ R + F F Y ++ +
Sbjct: 913 KKIKKLLEAEELHLAIMSRMQ-EKFYIRFDSNYEQWLALIKYTASIDCFFSLSQAAAALG 971
Query: 746 KNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGK 805
+ + RP ++ + ++ RHP ++ FVPND L E ++TGPNM GK
Sbjct: 972 EPYCRPEIIEQKDG-HLYFEELRHPCINASAASTFVPNDVVLGGESPNMIVLTGPNMAGK 1030
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S +RQV + IMAQ+G +VPA A + + IYTR+GA+D I RSTF+ EL+E I
Sbjct: 1031 STLLRQVCIAVIMAQLGCWVPAKRASITPMTSIYTRLGANDDIMSARSTFMVELSETKKI 1090
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
L C +SLVI+DELGRGTST+DG AIAYA L +L+ + C+ F THY +
Sbjct: 1091 LDECGPKSLVILDELGRGTSTYDGHAIAYAVLHHLVSNIGCLGFFSTHYQSLC------- 1143
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
V H + ++ +D K + VT+LYK+ G+ S+G VA +A LP I
Sbjct: 1144 --VDFMHHRQVRLMQMAAAVDEKIRR-VTFLYKLEDGICPKSYGMNVASMAGLPEKVIDA 1200
Query: 986 ATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSP 1029
A A++LE + S+ N S D + +SD Q + + + P
Sbjct: 1201 AEEKASELE-QASASFINAS---DDIALMSDFLQVLRISKSIEP 1240
Score = 174 (66.3 bits), Expect = 4.1e-72, Sum P(3) = 4.1e-72
Identities = 37/117 (31%), Positives = 62/117 (52%)
Query: 358 IEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMT---LSANTLQQLE 414
++ ++ LA+ A +L+Q L++ MC +F S + T ++ TL+ LE
Sbjct: 618 LKSYLSEKPLAISAFGALFWYLRQLKLDKDMCSMGNFDEYDASQQSTSLLMNGQTLKNLE 677
Query: 415 VLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAES 471
+ N+ +G GTL H++ +T +G RL W+ HPL I+ARLD V IA++
Sbjct: 678 IFSNSFDGGSEGTLFHLLCRCVTPFGKRLFHTWLCHPLRSGTAINARLDVVELIADN 734
Score = 83 (34.3 bits), Expect = 4.1e-72, Sum P(3) = 4.1e-72
Identities = 47/205 (22%), Positives = 77/205 (37%)
Query: 70 PHTLNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKV 129
P TL IP PS+ T + P E+Q ++K D ++ + G + + DA + +V
Sbjct: 361 PRTLY-IP-PSAWAT----FKPFEKQFWKIKKDLMDTVVFFQKGKFYELYENDAAIGHQV 414
Query: 130 LGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAA---IK--AHGPGKAG 184
+ N IP + + + G+++ V Q ETA IK +
Sbjct: 415 FSLKLTDRVNMKMVGIPEASFDYWASQFIAKGYRIARVDQLETALGKEIKDRQRTQKEEK 474
Query: 185 PFGRGLSALYTKATLXXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVR 244
RGL+ + T TL S Y C+ I+ + D +
Sbjct: 475 VVQRGLTQVLTSGTLVDEAMLTSDL------STY--CMA--------IKESLQSDNEEPS 518
Query: 245 LGVVAVEISTGDVVYGEFNDGFLRS 269
G+ ++ STG EF D R+
Sbjct: 519 FGICFIDTSTGGFHMCEFTDDIHRT 543
Score = 47 (21.6 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 321 GALAEVMSLYENMGEDTLSN--NEDQNMDVPEQGNHRSAIEGIMNMPD 366
G +++ ++ + + TLS+ N D N D P ++ S + + P+
Sbjct: 27 GFFSKIPNVKQEKSDSTLSSSSNHDSNHDTPADVDNSSNVNKNSSSPE 74
>UNIPROTKB|Q8TTB4 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:188937 "Methanosarcina acetivorans C2A" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE010299 GenomeReviews:AE010299_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_615487.1 ProteinModelPortal:Q8TTB4
GeneID:1472415 KEGG:mac:MA0523 BioCyc:MACE188937:GI2O-590-MONOMER
Uniprot:Q8TTB4
Length = 900
Score = 529 (191.3 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 129/396 (32%), Positives = 211/396 (53%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELP-AN 663
+I +G E+ R ++K+ + + R++ G+++L+ + V G + IE+ AN
Sbjct: 446 MIKSGYSPELDELRDISSNSKQWIAAFQQKERERSGIKSLKVGYNKVFG--YYIEVTHAN 503
Query: 664 F-KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
+VP ++ + + R+ +PE+ + ANE+ + + + E
Sbjct: 504 SSQVPEDYIRKQTMANAERFFTPELKEKESLILTANEKAVALEYEIFAEITRTLSARSRE 563
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
+ N N+ RP +D +I I GRHPV+++ + FVP
Sbjct: 564 LQETAERIGTLDVLASLAEATENNNYTRPQLTED---CKILIRDGRHPVVESTVSGGFVP 620
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
NDT + + ++TGPNM GKS Y+RQ ALI IMAQVGSFVPAS A + ++D ++TR+
Sbjct: 621 NDTEMDCKENQFLLVTGPNMAGKSTYMRQTALIAIMAQVGSFVPASYASVGIIDQVFTRI 680
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
GA D + G+STF+ E+ E + IL N + +SLV++DE+GRGTST+DG +IA A +++L
Sbjct: 681 GAFDDLASGQSTFMVEMVELANILNNASPKSLVLLDEIGRGTSTYDGYSIAKAVVEFLHN 740
Query: 903 HKKCMV--LFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVV 960
K + LF THY ++ ++ K V YH++ + ++ +L K+V
Sbjct: 741 RGKVGIRALFATHYHQLTALEEKLK-RVKNYHIAV-----------KEDGHELVFLRKIV 788
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAE 996
PG ++ S+G VA+LA +P I RA I +LE E
Sbjct: 789 PGATDRSYGIHVARLAGVPEKVIERANEILKELERE 824
Score = 159 (61.0 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 54/181 (29%), Positives = 82/181 (45%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA------HLDHNFMTA 143
TP +Q E K YPD L+ +G + FGEDA+ AK L I A
Sbjct: 6 TPAMRQYYEAKQAYPDTLIFFRMGDFYESFGEDAKTIAKELEITLTARGKDRTGERMPLA 65
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX 203
IP ++ ++ RL+N G+KV + +Q E KA G K RG+ + T T
Sbjct: 66 GIPYHAIDTYLPRLINKGYKVAICEQLEDPK-KAKGVVK-----RGVVRVVTPGT----- 114
Query: 204 XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFN 263
+NYL+ V +G GK +G G+ ++ G+ ++ISTG+ + +F
Sbjct: 115 -AIDSSMFSDASNNYLMAVAGREG--GK--SGKNGEK-EMEFGISFLDISTGEFLTTQFT 168
Query: 264 D 264
D
Sbjct: 169 D 169
Score = 126 (49.4 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
Identities = 27/78 (34%), Positives = 46/78 (58%)
Query: 393 SFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPL 452
+ R+ S + M L + TL+ LE+++N + + +L +N T T G+R L++W+ PL
Sbjct: 271 TLRTYSNTEFMILDSITLRNLEIVKNVRDEGDENSLYRTLNCTRTPMGNRTLKKWLLKPL 330
Query: 453 CDRNLISARLDAVSEIAE 470
I+ RLDA+ E+AE
Sbjct: 331 LSVEKINPRLDAIEELAE 348
Score = 49 (22.3 bits), Expect = 2.9e-60, Sum P(3) = 2.9e-60
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 448 VTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLT 507
V L D L AR + + EIAE + S+ E + + E + I++ + +
Sbjct: 392 VVPSLRDSLLEKARFEMLKEIAEGLASFSELEELAEMIE----IAIMDEPPVSVREGGMI 447
Query: 508 SLGRSPDI 515
G SP++
Sbjct: 448 KSGYSPEL 455
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 458 ISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQR 517
+SAR + E AE +G+ S+ + E N+ PQ +L GR P ++
Sbjct: 557 LSARSRELQETAERIGTLDVLASLAEATENNN---YTRPQLTEDCK-ILIRDGRHPVVES 612
Query: 518 GIT 520
++
Sbjct: 613 TVS 615
>UNIPROTKB|P74926 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243274 "Thermotoga maritima MSB8" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE000512 GenomeReviews:AE000512_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 EMBL:U71155 PIR:C72219 RefSeq:NP_229518.1
ProteinModelPortal:P74926 GeneID:897879 KEGG:tma:TM1719
PATRIC:23938414 Uniprot:P74926
Length = 793
Score = 513 (185.6 bits), Expect = 9.4e-68, Sum P(4) = 9.4e-68
Identities = 131/384 (34%), Positives = 211/384 (54%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELP-AN 663
+I G SE+ R ++ A+E L R++ G++ L + V G + IE+ AN
Sbjct: 401 VIKRGFSSELDEYRDLLEHAEERLKEFEEKERERTGIQKLRVGYNQVFG--YYIEVTKAN 458
Query: 664 F-KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
K+P ++ + + + R+ +PE+ ++ A E + + + + S +E +
Sbjct: 459 LDKIPDDYERKQTLVNSERFITPELKEFETKIMAAKERIEELEKELFKSVCEEVKKHKEV 518
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
+ N+ +PVF +D ++ I GRHPV++ NFV
Sbjct: 519 LLEISEDLAKIDALSTLAYDAIMYNYTKPVFSED----RLEIKGGRHPVVERFT-QNFVE 573
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
ND + E+ + +ITGPNM GKS +IRQV LI +MAQ+GSFVPA A L V D I+TRM
Sbjct: 574 NDIYMDNEKRFV-VITGPNMSGKSTFIRQVGLISLMAQIGSFVPAQKAILPVFDRIFTRM 632
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
GA D + GRSTFL E+NE + IL T +SLV++DE+GRGTST DGV+IA+A + L++
Sbjct: 633 GARDDLAGGRSTFLVEMNEMALILLKSTNKSLVLLDEVGRGTSTQDGVSIAWAISEELIK 692
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962
+ C VLF TH+ ++ +++ H + + ++ + K+ V + +KVV G
Sbjct: 693 -RGCKVLFATHFTELTELEK---------HFPQVQNKTILVKEEGKN---VIFTHKVVDG 739
Query: 963 VSESSFGFKVAQLAQLPPSCISRA 986
V++ S+G +VA++A +P I+RA
Sbjct: 740 VADRSYGIEVAKIAGIPDRVINRA 763
Score = 146 (56.5 bits), Expect = 9.4e-68, Sum P(4) = 9.4e-68
Identities = 31/84 (36%), Positives = 49/84 (58%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K TPL +Q + +K +Y D +L+ +G + F EDA++ +KVL I + A IP
Sbjct: 2 KVTPLMEQYLRIKEQYKDSILLFRLGDFYEAFFEDAKIVSKVLNIVLTRRQDAPMAGIPY 61
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTE 171
LN ++++LV AG+KV + Q E
Sbjct: 62 HALNTYLKKLVEAGYKVAICDQME 85
Score = 121 (47.7 bits), Expect = 9.4e-68, Sum P(4) = 9.4e-68
Identities = 33/102 (32%), Positives = 54/102 (52%)
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYG 426
LA++ALA I+++K + + L +S M L + T++ L ++ G
Sbjct: 215 LALKALAALIKYVKYTMIAEDLNLKPPLL-ISQRDYMILDSATVENLSLIP----GDRGK 269
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
L ++N+T T G+RLL++W+ HPL DR I RL AV +
Sbjct: 270 NLFDVLNNTETPMGARLLKKWILHPLVDRKQIEERLKAVERL 311
Score = 58 (25.5 bits), Expect = 9.4e-68, Sum P(4) = 9.4e-68
Identities = 28/128 (21%), Positives = 53/128 (41%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS 561
L + L D++R ++R+ + + P + +A+ + + K + L G +++
Sbjct: 318 LEEMRNLLSNVRDVERIVSRVEYNRSVPRDLVALRETLEIIPKLNEVLSTFGVFKKLAFP 377
Query: 562 KTLHSALLKRLILT--ASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARA 619
+ L LL++ I SP GK K + E + DLL +F E R
Sbjct: 378 EGLVD-LLRKAIEDDPVGSPGE-GKVIK--RGFSSELDEYRDLLEHAEERLKEFEEKERE 433
Query: 620 RKAVQSAK 627
R +Q +
Sbjct: 434 RTGIQKLR 441
>UNIPROTKB|Q7S4J6 [details] [associations]
symbol:NCU08135 "DNA mismatch repair protein msh6"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
PIRSF:PIRSF037677 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
EMBL:AABX02000052 RefSeq:XP_959678.2 UniGene:Ncr.20761
ProteinModelPortal:Q7S4J6 STRING:Q7S4J6
EnsemblFungi:EFNCRT00000008326 GeneID:3875816 KEGG:ncr:NCU08135
Uniprot:Q7S4J6
Length = 1237
Score = 532 (192.3 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
Identities = 154/499 (30%), Positives = 248/499 (49%)
Query: 507 TSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHS 566
+ + + PD++R I+RI P +F+ V++ + ++ L G +
Sbjct: 720 SQMSKMPDLERLISRIHAGACRPEDFVKVLEGFEQIDRTMELLESYGG----------GN 769
Query: 567 ALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSA 626
L+ RLI AS P + + +++ A + D L+I G + R++ +
Sbjct: 770 GLVDRLI--ASMPDLKEPLGYWKTAFDRKRA-RDD--KLLIPEPGIEEDFDRSQAELDRI 824
Query: 627 KEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPE 686
K EL L+ + L + +F V + IE+P KVP W ++++T RY+ E
Sbjct: 825 KGELQELLERQKTALRCKTAKFTDVGKEVYQIEVPKTVKVPPKWRQMSATSAVKRYYFKE 884
Query: 687 VLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSR-- 744
+ + +L A E + + + F K F Y + S
Sbjct: 885 LEDLVRELQEAEETHSQIVKEVASRFFKRFDLDYETWLQAIRIISQLDCLISLAKASSAL 944
Query: 745 NKNFVRPVFVDDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAEREYCQIITGPNMG 803
+ RPVFV+D V + RHP +L+T+ D+F+PND L + ++TG N
Sbjct: 945 GQPCCRPVFVNDERTV-VEFNELRHPCMLNTV--DDFIPNDIKLGGDEANINLLTGANAA 1001
Query: 804 GKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEAS 863
GKS +R + IMAQ+G +VPA SA L +D I +R+GA+D+I +STF EL+E
Sbjct: 1002 GKSTILRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQSTFFVELSETK 1061
Query: 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923
IL T +SLVI+DELGRGTS++DGVA+A A L ++ H C+ F THY +A T+
Sbjct: 1062 KILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATHYHSLA---TE 1118
Query: 924 FTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
F H + + ++ +D ++ + +T+LYK+ GV+E SFG A + +P I
Sbjct: 1119 FEN-----HPE-IRARRMQIAVDEENKR-ITFLYKLEDGVAEGSFGMHCAAMCGIPDKVI 1171
Query: 984 SRATVIAAKLEAEVSSRVQ 1002
R+ V AAK E E +SR++
Sbjct: 1172 RRSEV-AAK-EWEHTSRLK 1188
Score = 179 (68.1 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
Identities = 38/103 (36%), Positives = 59/103 (57%)
Query: 366 DLAVQALALTIRHLKQFGLER-IMCLG--ASFRSLSGSMEMTLSANTLQQLEVLRNNSNG 422
DL + AL ++L+ LER ++ G A + + + + L +L LE+ N +NG
Sbjct: 603 DLLMSALGALTQYLRMLKLERNLLSQGNFAWYNPIHRNGTLILDGQSLINLEIFANTANG 662
Query: 423 SEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
GTL H++N +T +G RL R+WV HPLC+ ++ RLDAV
Sbjct: 663 GPEGTLFHLLNRCITPFGKRLFRQWVCHPLCNIQKLNERLDAV 705
Score = 86 (35.3 bits), Expect = 3.2e-65, Sum P(3) = 3.2e-65
Identities = 21/87 (24%), Positives = 41/87 (47%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIP 146
++++P E Q E+K D ++ + G + + DA + ++ + N +P
Sbjct: 348 RQFSPFETQYWEIKKNLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVP 407
Query: 147 TFRLNVHVRRLVNAGFKVGVVKQTETA 173
L++ V + V G+KV V Q E+A
Sbjct: 408 ESSLDMWVNQFVAKGYKVARVDQMESA 434
>TIGR_CMR|CBU_1056 [details] [associations]
symbol:CBU_1056 "DNA mismatch repair protein MutS"
species:227377 "Coxiella burnetii RSA 493" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_820057.2
ProteinModelPortal:Q83CQ2 SMR:Q83CQ2 PRIDE:Q83CQ2 GeneID:1208957
KEGG:cbu:CBU_1056 PATRIC:17930837
BioCyc:CBUR227377:GJ7S-1048-MONOMER Uniprot:Q83CQ2
Length = 859
Score = 490 (177.5 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 109/256 (42%), Positives = 158/256 (61%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
NF P F D P+ I I +GRHP+++ ++ D F+PNDT+L +R IITGPNMGGKS
Sbjct: 574 NFNAPQFCD--YPI-IKIEAGRHPIVENVMTDPFMPNDTHLDEKRRML-IITGPNMGGKS 629
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
Y+RQ ALI ++A +GSFVPA +A+L +D I+TR+GA+D + GRSTF+ E+ E + IL
Sbjct: 630 TYMRQTALITLLAYIGSFVPAKNAQLGPIDRIFTRIGAADDLASGRSTFMVEMTETAAIL 689
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
N T +SLV++DE+GRGTST DG+++AYA YL K LF THY ++ + +
Sbjct: 690 HNATEESLVLMDEVGRGTSTFDGLSLAYACASYLATKLKAFALFATHYFELTALASTLQ- 748
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
+V H+ + H ++ + +L+ + G + S+G +VAQLA +P S I A
Sbjct: 749 AVKNVHLDAV-EH----------EEKIIFLHALREGPANKSYGLQVAQLAGIPRSVIQHA 797
Query: 987 TVIAAKLEAEVSSRVQ 1002
+LE V S Q
Sbjct: 798 RQKLEELENPVISETQ 813
Score = 143 (55.4 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 36/111 (32%), Positives = 61/111 (54%)
Query: 360 GIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNN 419
GI ++P LA+ A ++++ + + S ++ + + ANT + LE++ N
Sbjct: 231 GITHLP-LAITAAGCLLQYVNYTQKSALPHIH-SIQAEQNEEALFIDANTRRNLELI-TN 287
Query: 420 SNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
G E +L +++HT T GSRLLRRW+ PL D+ L+ R +AVS + E
Sbjct: 288 LQGEEVHSLAWLLDHTATPMGSRLLRRWINRPLRDQILLQQRQNAVSTLLE 338
Score = 119 (46.9 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 35/126 (27%), Positives = 60/126 (47%)
Query: 81 SQTTHN--KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA---- 134
S TT N ++TP+ +Q + +K +YPD+L+ +G + F +DA+ AAK+L I
Sbjct: 7 SPTTQNDFSQHTPMMRQYLRIKAEYPDLLVFYRMGDFYELFYDDAKKAAKLLNITLTARG 66
Query: 135 -HLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSAL 193
H A +P + ++ +LV G V + +Q A GP R ++ +
Sbjct: 67 QSAGHAIPMAGVPYHAVENYLTKLVRLGESVVICEQIGDPATSK------GPVAREVTRI 120
Query: 194 YTKATL 199
T T+
Sbjct: 121 ITPGTV 126
Score = 61 (26.5 bits), Expect = 8.4e-64, Sum P(4) = 8.4e-64
Identities = 28/102 (27%), Positives = 52/102 (50%)
Query: 487 KNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQA--ILYA-G 543
+N+ T++E + Y S + +L D++R + RI R+A P + + + QA +L
Sbjct: 330 QNAVSTLLEKRNY---SEIYENLRHIGDLERIVARIALRSARPRDLMQLRQALGVLPTLH 386
Query: 544 KQLQQLHIDGEYREKVTSKTLHSAL---LKRLILTASSPAVI 582
+QL L ++ + +E + L L LK+ I+ + P VI
Sbjct: 387 QQLTNLPLNKQLQEIKNNLGLFDELFRLLKKAIIE-NPPIVI 427
Score = 45 (20.9 bits), Expect = 1.1e-12, Sum P(3) = 1.1e-12
Identities = 16/60 (26%), Positives = 26/60 (43%)
Query: 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAK-RDLLVKLSDQEQE 1020
G+ + F + + PP I VIA +A + ++N S L+ L QE+E
Sbjct: 406 GLFDELFRLLKKAIIENPPIVIRDGGVIADGYDAPLDE-LRNMSTNSHQFLIDLEQQERE 464
Score = 39 (18.8 bits), Expect = 1.2e-50, Sum P(3) = 1.2e-50
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 602 LLNLMIISNGQFSEVARARKAVQSAKEE 629
L+ +I N F+E+ R R A EE
Sbjct: 163 LIQEIISENALFAEIERIRPAELLISEE 190
>DICTYBASE|DDB_G0268614 [details] [associations]
symbol:msh6 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0032301 "MutSalpha
complex" evidence=ISS;IBA] [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0006200 "ATP catabolic process" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0006974 "response to DNA damage stimulus" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0268614
GO:GO:0005524 GO:GO:0009411 GenomeReviews:CM000150_GR GO:GO:0003684
EMBL:AAFI02000003 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 RefSeq:XP_647085.1 STRING:Q55GU9 PRIDE:Q55GU9
EnsemblProtists:DDB0229918 GeneID:8615889 KEGG:ddi:DDB_G0268614
ProtClustDB:CLSZ2497299 Uniprot:Q55GU9
Length = 1260
Score = 534 (193.0 bits), Expect = 3.1e-63, Sum P(5) = 3.1e-63
Identities = 135/427 (31%), Positives = 220/427 (51%)
Query: 606 MIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF- 664
++ S G F E + +QS ++ + + +E+ + + IE+P F
Sbjct: 828 VVPSKGLFLEFDQCLGNIQSLEQSFAKHLEEQKAHFKCNKIEYKHMGKEIYQIEIPVAFT 887
Query: 665 -KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEF 723
K+P ++ +S+ K RYHSP V L L + ++ + L F Y+ F
Sbjct: 888 KKLPAGFSLKSSSSKVNRYHSPFVTKNLTSLLEERDTYEVLSKEVLKKILSNFAIYFNHF 947
Query: 724 XXXXXXXXXXXXXXXXXXXSRNKNF--VRPVFVDDHEPVQIHICSGRHPVLDTILLDNFV 781
S + RP+FV + I + RHP + + D+F+
Sbjct: 948 QIAITKLSQLDCLLSLYKVSFQSSIQMCRPLFVSSDQRGFIDVKDMRHPCIYSKSGDDFI 1007
Query: 782 PNDTNLHAERE--YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIY 839
PND +L+ E ++TGPNMGGKS +RQ ++ IMAQ+G +V ASS E+ ++D I+
Sbjct: 1008 PNDISLNTENNPPSLMVLTGPNMGGKSTLLRQSCILVIMAQMGCYVSASSCEMSIVDRIF 1067
Query: 840 TRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899
TR+GA+D+I G+STF+ EL E S +L+ T +SLVI+DELGRGTST DG +IAY+ L+Y
Sbjct: 1068 TRLGANDNILAGQSTFMVELAETSAVLKYATKRSLVILDELGRGTSTFDGYSIAYSVLNY 1127
Query: 900 LLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKV 959
L + M +F THY +A T + T +Y+T H +D ++ + V +LYK+
Sbjct: 1128 LATKVQSMCIFATHYQSLAYEPT-VRDLIST---AYMTCH-----VDEEAKK-VIFLYKL 1177
Query: 960 VPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAE--VSSRVQNRSAKRDLLVKLSDQ 1017
GV +S+G VA +A LP I++A + ++E + + S + ++ L+ K+
Sbjct: 1178 ASGVCPNSYGLHVASMAGLPREIITKAEEKSTQMEKDSVLVSFIHGTISRSKLVEKIVQS 1237
Query: 1018 EQEAQEN 1024
++ N
Sbjct: 1238 YKQKDLN 1244
Score = 131 (51.2 bits), Expect = 3.1e-63, Sum P(5) = 3.1e-63
Identities = 26/78 (33%), Positives = 41/78 (52%)
Query: 394 FRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLC 453
F L M L L LE+ N+++GS GTL +M+ T +G R+ R+W+ PL
Sbjct: 635 FNPLDIGNSMILDGQCLVNLEIFNNSTDGSTEGTLFKLMDRCTTAFGKRMFRQWICRPLA 694
Query: 454 DRNLISARLDAVSEIAES 471
++N I R A+ + +S
Sbjct: 695 NKNAIVDRQKAIEFLRDS 712
Score = 99 (39.9 bits), Expect = 3.1e-63, Sum P(5) = 3.1e-63
Identities = 29/140 (20%), Positives = 59/140 (42%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K++P E+Q ++K+K D ++ + G + + DA++ + L + N +P
Sbjct: 359 KFSPFERQFWDIKSKNYDTVVFFKKGKFYELYESDADIGHQQLHLKLTDRVNMRMVGVPE 418
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKAT-LXXXXXXX 206
N +L++ G KV V Q ET+ A + G + S + + T +
Sbjct: 419 MSFNHWASKLIHLGHKVAKVDQMETSIGMAKRQNEKGGRNKKDSIIQRELTSILTAGTLL 478
Query: 207 XXXXXXXXXSNYLVCVVDDD 226
S YL+ + +++
Sbjct: 479 DEQMITDQTSTYLMAIKENE 498
Score = 59 (25.8 bits), Expect = 3.1e-63, Sum P(5) = 3.1e-63
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKV 559
L V L + PD++R I RI +T+ S+ I+V+ +L +L + E E +
Sbjct: 716 LQKVTAILNKLPDLERMIARIRAQTSKISDLISVLNHFDNIHSKLLELLDEAEQIESI 773
Score = 38 (18.4 bits), Expect = 3.1e-63, Sum P(5) = 3.1e-63
Identities = 8/11 (72%), Positives = 9/11 (81%)
Query: 5 KQQVISRFFAP 15
KQ IS+FFAP
Sbjct: 7 KQTNISQFFAP 17
>UNIPROTKB|G4NEZ2 [details] [associations]
symbol:MGG_00704 "DNA mismatch repair protein msh6"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CM001235
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR017261 PIRSF:PIRSF037677 RefSeq:XP_003718302.1
ProteinModelPortal:G4NEZ2 EnsemblFungi:MGG_00704T0 GeneID:2675105
KEGG:mgr:MGG_00704 Uniprot:G4NEZ2
Length = 1218
Score = 512 (185.3 bits), Expect = 3.4e-63, Sum P(3) = 3.4e-63
Identities = 160/509 (31%), Positives = 248/509 (48%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
IL + + + PD++R I+RI +F+ V++ +Q+ EY +
Sbjct: 695 ILEQFSSLMSKMPDLERLISRIHAGVCKAEDFVRVLEGF-------EQI----EYAMSML 743
Query: 561 SKTLH-SALLKRLI---LTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEV 616
S + L+ RLI L P K+A K+ D+ L+I G +
Sbjct: 744 SAFGGGNGLVDRLISSMLDLKEPLTFWKSA----FDRKKVRDE----KLLIPERGIEEDF 795
Query: 617 ARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNST 676
+ + K++L SL++ + L ++L+F V + IE P + KVP +W ++++T
Sbjct: 796 DESADNIVRIKKDLQSLLDKQKAALKCKSLKFTDVGKEIYQIEAPKSTKVPKDWRQMSAT 855
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
RY+ E+ + +L A E + + + F K F YA +
Sbjct: 856 SAVKRYYFRELDELVRELQEAEETHSQIVKDVAARFFKRFDVDYAIWIQAIRIISQLDCL 915
Query: 737 X--XXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAEREY 793
S + RP FVD HE + RHP +L+T+ D+F+PND L +
Sbjct: 916 ICLAKASSSLGEPSCRPTFVD-HERSVVEFEELRHPCMLNTV--DDFIPNDIKLGGDDAN 972
Query: 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRS 853
++TG N GKS +R + IMAQ+G +VPA SA L +D I +R+GA+D+I +S
Sbjct: 973 INLLTGANAAGKSTVLRMSCIAVIMAQIGCYVPAVSARLTPVDRIMSRLGANDNIFAAQS 1032
Query: 854 TFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913
TF EL+E IL T +SLVI+DELGRGTS++DGVA+A A L ++ H C+ F TH
Sbjct: 1033 TFFVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVASHIGCVGFFATH 1092
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
Y +A T+F H + D+K + VT+LY++ GV+E SFG A
Sbjct: 1093 YHSLA---TEFEN-----HPEIRAKRMQIQVDDAK--RRVTFLYRLEDGVAEGSFGMHCA 1142
Query: 974 QLAQLPPSCISRATVIAAKLEAEVSSRVQ 1002
+ + I RA V AAK E E +SR++
Sbjct: 1143 AMCGISDRVIERAEV-AAK-EWEHTSRLK 1169
Score = 170 (64.9 bits), Expect = 3.4e-63, Sum P(3) = 3.4e-63
Identities = 37/103 (35%), Positives = 56/103 (54%)
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFR---SLSGSMEMTLSANTLQQLEVLRNNSNG 422
DL + A+ + +L+ LER + +F + + L +L LEV N+ NG
Sbjct: 584 DLLMSAMGALVHYLRVLKLERSLLSQGNFEWYNPIHRDGTLVLDGQSLINLEVFSNSVNG 643
Query: 423 SEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
GTL +++N +T +G RL R+WV HPLC+ I+ RLDAV
Sbjct: 644 GPEGTLFNLLNRCITPFGKRLFRQWVCHPLCNIKKINERLDAV 686
Score = 97 (39.2 bits), Expect = 3.4e-63, Sum P(3) = 3.4e-63
Identities = 23/86 (26%), Positives = 42/86 (48%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K++P E+Q E+K K D ++ + G + + DA + ++ + N +P
Sbjct: 326 KFSPFEKQYWEIKQKLWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVPE 385
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTETA 173
L++ V + V G+KV V Q E+A
Sbjct: 386 ASLDIWVNQFVAKGYKVARVDQMESA 411
>TIGR_CMR|CHY_1397 [details] [associations]
symbol:CHY_1397 "DNA mismatch repair protein HexA"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006298 GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
OMA:HYFELTV KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_360229.1 ProteinModelPortal:Q3ACA5
STRING:Q3ACA5 GeneID:3728668 KEGG:chy:CHY_1397 PATRIC:21275925
BioCyc:CHYD246194:GJCN-1396-MONOMER Uniprot:Q3ACA5
Length = 841
Score = 521 (188.5 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 137/392 (34%), Positives = 215/392 (54%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK 665
II NG V RKA + ++ + + R++ G+++L+ + IE+ AN
Sbjct: 408 IIKNGYNPTVDEYRKAREEGQDWIINYEKKERERTGIKSLKVNYNKVFGYFIEVTKANLH 467
Query: 666 -VPLNWAKVNSTKKTIRYHSPEVLTALDQLAL-ANEELTIVCRAAWDSFLKEFGGYYAEF 723
VP ++ + + R+ + E L + L L A+E+L + + E Y +
Sbjct: 468 LVPADYQRKQTMVNAERFITEE-LKHYENLILGASEKLANLEYELFCEIRSEILKYQEDL 526
Query: 724 XXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLD-TILLDNFVP 782
+ +F RPV EPV + I +GRHPV++ ++ NFVP
Sbjct: 527 KRAASAVALLDFLISLAVAAIEYDFTRPVITA--EPV-LEIKNGRHPVVEKSVGRANFVP 583
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
ND L + +ITGPNM GKS Y+RQ ALI I+AQ+GSFVPA A + ++D I TR+
Sbjct: 584 NDLYLDTKENSLLLITGPNMAGKSTYMRQAALIVILAQIGSFVPAEYARVGLVDKILTRI 643
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
GA+D + +G+STF+ E+ E + ILRN T++SL+++DE+GRGTST+DG++IA A ++Y+ +
Sbjct: 644 GATDDLAKGQSTFMVEMIECNNILRNATSRSLILLDEVGRGTSTYDGISIAEAIIEYIQK 703
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962
K LF THY ++ ++ + G V + V L K ++V +L+KVVPG
Sbjct: 704 KIKARTLFSTHYHELTGLEGEIPG-VKNFTV--LVQEK---------GEEVKFLHKVVPG 751
Query: 963 VSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
++ S+G VA+LA LP + RA I A+ E
Sbjct: 752 KTDKSYGIYVAKLAGLPREVVERAYEILARFE 783
Score = 128 (50.1 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 50/194 (25%), Positives = 87/194 (44%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ +Q +++K +Y D LL +G + F EDA +A++ L I A +
Sbjct: 3 FTPMMKQYLDIKKQYSDCLLFFRLGDFYELFFEDAVIASRELEIVLTGRDAGQEERVPMC 62
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX 203
+P ++ +L++ G+KV + +Q E KA G K R ++ +YT T+
Sbjct: 63 GVPYHSAQGYIAKLLSRGYKVAICEQVEDPK-KAKGLVK-----REVTKIYTPGTVTEEF 116
Query: 204 XXXXXXXXXXXXSNYLVCVVDDDG----NVGKIRNGVFG-DGFDV-RLGVVAVEIS---- 253
+NY++ + + DG V ++ G G D ++ V+A EI
Sbjct: 117 FLQEKT------NNYIIALAEKDGLIALAVAEVSTGYLGITSVDEGKIEVLASEIRRLAP 170
Query: 254 TGDVVYGEFNDGFL 267
T VV F + FL
Sbjct: 171 TEAVVLKNFKNNFL 184
Score = 105 (42.0 bits), Expect = 2.2e-62, Sum P(3) = 2.2e-62
Identities = 38/128 (29%), Positives = 63/128 (49%)
Query: 358 IEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGA-SFRSLSGSMEMTLSANTLQQLEVL 416
IE P+ + +A + I +LK+ + G F + + S T + LE+L
Sbjct: 203 IEIAFKGPEASKEAYKILISYLKRIEPAVLSIFGQPEFYQIDSYLYFDES--TRKNLEIL 260
Query: 417 RNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYR 476
RN + S +LL I++ T T G+R L+ +T PL + I+ RLDAV EI + Y
Sbjct: 261 RNREDNSS--SLLGIIDFTQTAMGARKLKEELTKPLLNLKAIADRLDAV-EIL--VNDYE 315
Query: 477 TSESVGQH 484
E++ ++
Sbjct: 316 LRENLREN 323
>UNIPROTKB|Q8A334 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_812033.1
ProteinModelPortal:Q8A334 GeneID:1075929 KEGG:bth:BT_3121
PATRIC:21061245 BioCyc:BTHE226186:GJXV-3185-MONOMER Uniprot:Q8A334
Length = 862
Score = 553 (199.7 bits), Expect = 5.6e-62, Sum P(3) = 5.6e-62
Identities = 155/484 (32%), Positives = 258/484 (53%)
Query: 556 REKVTSKTLHSAL--LKRLILTASSPAV--IGKAAKLLSTVNKEAADQ--GD---LLNLM 606
RE V K A+ +K+ L A + ++ IG+ L ++ A + D L+N
Sbjct: 354 REVVQLKVALQAIEPIKQACLEADNASLNRIGEQLNLCISIRDRIAKEINNDPPLLINKG 413
Query: 607 -IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF- 664
+I +G E+ R+ S K+ L + +Q G+ +L+ + + IE+ N
Sbjct: 414 GVIKDGVNEELDELRRISYSGKDYLLQIQQRESEQTGIPSLKVAYNNVFGYYIEV-RNIH 472
Query: 665 --KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
KVP W + + RY + E+ +++ A +++ ++ + ++ + +
Sbjct: 473 KDKVPQEWIRKQTLVNAERYITQELKVYEEKILGAEDKILVLETQLYTDLVQALTEFIPQ 532
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILL--DNF 780
+R N++RPV ++D++ + I GRHPV++ L + +
Sbjct: 533 IQINANQIARLDCLLSFANVARENNYIRPV-IEDNDVLDIR--QGRHPVIEKQLPIGEKY 589
Query: 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYT 840
+ ND L + + IITGPNM GKS +RQ ALI ++AQ+GSFVPA SA + ++D I+T
Sbjct: 590 IANDVMLDSASQQIIIITGPNMAGKSALLRQTALITLLAQIGSFVPAESAHIGLVDKIFT 649
Query: 841 RMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900
R+GASD+I G STF+ E+NEA+ IL N +++SLV+ DELGRGTST+DG++IA+A ++Y+
Sbjct: 650 RVGASDNISVGESTFMVEMNEAADILNNVSSRSLVLFDELGRGTSTYDGISIAWAIVEYI 709
Query: 901 LEHKKCMV--LFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYK 958
EH K LF THY ++ +++ F + Y+VS + +D+K V +L K
Sbjct: 710 HEHPKAKARTLFATHYHELNEMEKSFK-RIKNYNVS-------VKEVDNK----VIFLRK 757
Query: 959 VVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQE 1018
+ G SE SFG VA++A +P S + RA I +LE++ +R Q S K L ++S+
Sbjct: 758 LERGGSEHSFGIHVAKMAGMPKSIVKRANTILKQLESD--NRQQGISGKP--LTEVSENR 813
Query: 1019 QEAQ 1022
Q
Sbjct: 814 SGMQ 817
Score = 98 (39.6 bits), Expect = 5.6e-62, Sum P(3) = 5.6e-62
Identities = 20/57 (35%), Positives = 39/57 (68%)
Query: 409 TLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
T++ LE++ + ++G +LL++++ T++ G+RLL+RW+ PL D I+ RL+ V
Sbjct: 262 TVRSLELIGSMNDGGS--SLLNVIDRTISPMGARLLKRWMVFPLKDEKPINDRLNVV 316
Score = 95 (38.5 bits), Expect = 5.6e-62, Sum P(3) = 5.6e-62
Identities = 23/83 (27%), Positives = 43/83 (51%)
Query: 94 QQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHN-----FMTASIPTF 148
+Q ++LK K+PD +++ G + + DA +A+++LGI N A P
Sbjct: 3 KQFLDLKAKHPDAVMLFRCGDFYETYSTDAIVASEILGITLTKRANGKGKTIEMAGFPHH 62
Query: 149 RLNVHVRRLVNAGFKVGVVKQTE 171
L+ ++ +L+ AG +V + Q E
Sbjct: 63 ALDTYLPKLIRAGKRVAICDQLE 85
>ASPGD|ASPL0000041666 [details] [associations]
symbol:mshA species:162425 "Emericella nidulans"
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 504 (182.5 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 153/513 (29%), Positives = 252/513 (49%)
Query: 507 TSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHS 566
+ L + PD++R I+RI +F+ V++ +Q+ EY T+
Sbjct: 664 SQLTKMPDLERLISRIHAANCRAQDFVRVLEGF-------EQI----EY-------TM-- 703
Query: 567 ALLKRLILTASSPAVIGKAAKLLSTVN------KEAAD--QGDLLNLMIISNGQFSEVAR 618
+LLK + S VIG+ K + + K A D Q +++ G +
Sbjct: 704 SLLKD---SGSGEGVIGQLIKSMPDLTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDS 760
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFK-VPLNWAKVNSTK 677
+++ ++ ++LD L+ R++LG + + + +E+P K +P NW ++++TK
Sbjct: 761 SQETIRQLHQDLDDLLKRTRRELGSTAICYRDNGKEIYQMEVPIKVKNIPRNWDQMSATK 820
Query: 678 KTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXX--X 735
+ RY+ PE+ T + +L A E + + + F F +Y+ +
Sbjct: 821 QVKRYYFPELRTTIRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAVRVVSQLDCLI 880
Query: 736 XXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQ 795
S + RP FV+D V + RHP L + + D+F+PND L
Sbjct: 881 SLAKASSSLGEPSCRPTFVEDERSV-LEFEELRHPCLISSV-DDFIPNDIQLGGSGPNID 938
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
++TG N GKS +R + IMAQVG ++P SA L +D I +R+GA+D+I +STF
Sbjct: 939 LLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTF 998
Query: 856 LEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915
EL+E IL T +SLVI+DELGRGTS++DGVA+A A L ++ H + F THY
Sbjct: 999 FVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYH 1058
Query: 916 KIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQL 975
+A +F H + ++ +D ++++ VT+LYK+ GV+E SFG A +
Sbjct: 1059 SLA---AEFEN-----HPE-IKPKRMKIHVD-ENERRVTFLYKLEDGVAEGSFGMHCAAM 1108
Query: 976 AQLPPSCISRATVIAAKLEAEVSSRVQNRSAKR 1008
+P I RA V AAK + E +SR+ +R
Sbjct: 1109 CGIPNKVIERAEV-AAK-QWEHTSRLTESLERR 1139
Score = 162 (62.1 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 35/110 (31%), Positives = 63/110 (57%)
Query: 366 DLAVQALALTIRHLKQFGLER-IMCLG--ASFRSLSGSMEMTLSANTLQQLEVLRNNSNG 422
+L + A +++L+ LER ++ +G + + + + + L TL +E+ N+ +G
Sbjct: 547 ELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASSLVLDGQTLINMEIFANSFDG 606
Query: 423 SEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI-AES 471
GTL ++N +T +G R+ ++WV HPL D I+ARLDAV + A+S
Sbjct: 607 GVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADS 656
Score = 96 (38.9 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K++P E+Q E+K K+ D ++ + G + + DA + ++ + N +P
Sbjct: 290 KFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVPE 349
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTETAAIKA--HGPGKAG 184
L+ + V GFK+ V Q+E+A K GK G
Sbjct: 350 SSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKG 388
>UNIPROTKB|Q5BCM2 [details] [associations]
symbol:AN1708.2 "Protein required for mismatch repair in
mitosis and meiosis (Eurofung)" species:227321 "Aspergillus
nidulans FGSC A4" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:BN001307 EMBL:AACD01000026 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 PIRSF:PIRSF037677 HOGENOM:HOG000189303
OrthoDB:EOG4F4WK5 RefSeq:XP_659312.1 ProteinModelPortal:Q5BCM2
STRING:Q5BCM2 EnsemblFungi:CADANIAT00008351 GeneID:2874945
KEGG:ani:AN1708.2 Uniprot:Q5BCM2
Length = 1186
Score = 504 (182.5 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 153/513 (29%), Positives = 252/513 (49%)
Query: 507 TSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHS 566
+ L + PD++R I+RI +F+ V++ +Q+ EY T+
Sbjct: 664 SQLTKMPDLERLISRIHAANCRAQDFVRVLEGF-------EQI----EY-------TM-- 703
Query: 567 ALLKRLILTASSPAVIGKAAKLLSTVN------KEAAD--QGDLLNLMIISNGQFSEVAR 618
+LLK + S VIG+ K + + K A D Q +++ G +
Sbjct: 704 SLLKD---SGSGEGVIGQLIKSMPDLTELLEYWKTAFDHNQAKESGILVPKPGVEEDFDS 760
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFK-VPLNWAKVNSTK 677
+++ ++ ++LD L+ R++LG + + + +E+P K +P NW ++++TK
Sbjct: 761 SQETIRQLHQDLDDLLKRTRRELGSTAICYRDNGKEIYQMEVPIKVKNIPRNWDQMSATK 820
Query: 678 KTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXX--X 735
+ RY+ PE+ T + +L A E + + + F F +Y+ +
Sbjct: 821 QVKRYYFPELRTTIRKLQEAQETHSQIVKEVSKRFYARFDEHYSTWLSAVRVVSQLDCLI 880
Query: 736 XXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQ 795
S + RP FV+D V + RHP L + + D+F+PND L
Sbjct: 881 SLAKASSSLGEPSCRPTFVEDERSV-LEFEELRHPCLISSV-DDFIPNDIQLGGSGPNID 938
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
++TG N GKS +R + IMAQVG ++P SA L +D I +R+GA+D+I +STF
Sbjct: 939 LLTGANAAGKSTLLRMTCVAVIMAQVGCYLPCRSARLTPVDRIMSRLGANDNIFAAQSTF 998
Query: 856 LEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915
EL+E IL T +SLVI+DELGRGTS++DGVA+A A L ++ H + F THY
Sbjct: 999 FVELSETKKILSEATPRSLVILDELGRGTSSYDGVAVAQAVLHHVATHIGALGFFATHYH 1058
Query: 916 KIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQL 975
+A +F H + ++ +D ++++ VT+LYK+ GV+E SFG A +
Sbjct: 1059 SLA---AEFEN-----HPE-IKPKRMKIHVD-ENERRVTFLYKLEDGVAEGSFGMHCAAM 1108
Query: 976 AQLPPSCISRATVIAAKLEAEVSSRVQNRSAKR 1008
+P I RA V AAK + E +SR+ +R
Sbjct: 1109 CGIPNKVIERAEV-AAK-QWEHTSRLTESLERR 1139
Score = 162 (62.1 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 35/110 (31%), Positives = 63/110 (57%)
Query: 366 DLAVQALALTIRHLKQFGLER-IMCLG--ASFRSLSGSMEMTLSANTLQQLEVLRNNSNG 422
+L + A +++L+ LER ++ +G + + + + + L TL +E+ N+ +G
Sbjct: 547 ELVMSAFGALVQYLRLLKLERDLITIGNFSWYDPIKKASSLVLDGQTLINMEIFANSFDG 606
Query: 423 SEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI-AES 471
GTL ++N +T +G R+ ++WV HPL D I+ARLDAV + A+S
Sbjct: 607 GVDGTLFQLLNRCMTPFGKRMFKQWVCHPLVDPQRINARLDAVDALNADS 656
Score = 96 (38.9 bits), Expect = 2.0e-61, Sum P(3) = 2.0e-61
Identities = 26/99 (26%), Positives = 46/99 (46%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K++P E+Q E+K K+ D ++ + G + + DA + ++ + N +P
Sbjct: 290 KFSPFEKQYWEIKQKFWDTVVFFKKGKFYELYENDATIGHQLFDLKLTDRVNMRMVGVPE 349
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTETAAIKA--HGPGKAG 184
L+ + V GFK+ V Q+E+A K GK G
Sbjct: 350 SSLDHWANQFVAKGFKIARVDQSESALGKEMRERDGKKG 388
>UNIPROTKB|Q7NLT8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:251221 "Gloeobacter violaceus PCC 7421" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000045 GenomeReviews:BA000045_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:NP_923979.1 ProteinModelPortal:Q7NLT8
GeneID:2599151 KEGG:gvi:gvip140 PATRIC:22041477
BioCyc:GVIO251221:GH9A-1085-MONOMER Uniprot:Q7NLT8
Length = 890
Score = 514 (186.0 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 128/374 (34%), Positives = 206/374 (55%)
Query: 628 EELDSLINMC---RKQLGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRY 682
E+ D L+++ R + G++ L+ F G I K P + + + RY
Sbjct: 510 EDRDWLVDLEARERARTGIQTLKVGFNKAFGYYLSISRGKAEKAPPEYLRKQTLTNEERY 569
Query: 683 HSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXX 742
+PE+ ++ A ++ + ++ +E G + +
Sbjct: 570 ITPELKERETRILNAQQQTNQLEYDIFNILRQEAGRHVSALRQVARRVAALDALAGLAEV 629
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLD-TILLDNFVPNDTNLHAEREYCQII-TGP 800
+ ++ RPV + E +HI +GRHPV++ I FVPND + AE E II TGP
Sbjct: 630 AVYHDYCRPVLGEGRE---VHIEAGRHPVIEQAIPAGFFVPNDARMGAEAEPDLIILTGP 686
Query: 801 NMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELN 860
NM GKS +IRQVALI ++AQVG+FVPA A L V D I+TR+GA D + G+STF+ E+
Sbjct: 687 NMSGKSSFIRQVALIQLLAQVGAFVPARGAVLGVADRIFTRVGAVDDLATGQSTFMVEMT 746
Query: 861 EASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920
E + IL + T +SLV++DE+GRGT+T DG+AIA+A +YL H +C +F THY ++ ++
Sbjct: 747 ETANILNHATPRSLVLLDEIGRGTATFDGLAIAWAVAEYLASHIRCRTIFATHYHELNEL 806
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPP 980
+ +G V Y V+ + +D+ + +L++V PG ++ S+G +V +LA LPP
Sbjct: 807 ASVVSG-VANYQVT----------VQELADR-IVFLHRVTPGGADRSYGIEVGRLAGLPP 854
Query: 981 SCISRATVIAAKLE 994
S ++RA + A++E
Sbjct: 855 SVVARARTVLAQVE 868
Score = 150 (57.9 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 37/110 (33%), Positives = 62/110 (56%)
Query: 360 GIMNMPDLAVQALALTIRHLKQFGLERIMCLGAS-FRSLSGSMEMTLSANTLQQLEVLRN 418
G N+P LAV+A ++HL + +R + + R+ + S + L T + LE+ +
Sbjct: 290 GCENLP-LAVRAAGGLVQHLLE--TQRGVSIPLEGIRTYTLSQYLILDHQTRRNLELTQT 346
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
+G++YG+LL ++ T T+ G R LRRW+ PL D I R D+V+E+
Sbjct: 347 VRDGAQYGSLLWALDRTRTVMGGRALRRWLLQPLLDTRAIGRRQDSVAEL 396
Score = 87 (35.7 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY------AHLDHNFMTA 143
TP+ QQ VE+K ++P LL+ +G + F DAE+ ++ L I A
Sbjct: 22 TPMLQQYVEVKAQHPHCLLLYRMGDFYETFLADAEIVSRELEIVLTGRQAGDKIGRIPMA 81
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTET 172
IP L + +L+ G+ V + Q E+
Sbjct: 82 GIPHHALERYCAQLIEKGYAVVICDQVES 110
Score = 42 (19.8 bits), Expect = 4.8e-45, Sum P(3) = 4.8e-45
Identities = 13/48 (27%), Positives = 24/48 (50%)
Query: 411 QQLE-VLRNNSNGSEYGTL--LHIMNHTLTIYGSRLLRRWVTHPLCDR 455
++LE VL G + G + I +H L Y ++L+ + +CD+
Sbjct: 60 RELEIVLTGRQAGDKIGRIPMAGIPHHALERYCAQLIEKGYAVVICDQ 107
Score = 41 (19.5 bits), Expect = 1.0e-09, Sum P(3) = 1.0e-09
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 960 VPGVSESSFGFKVAQ-LAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQE 1018
+P V G K+ + L PP ++ +I A + E+ RD LV L +E
Sbjct: 464 IP-VELERLGEKLRRTLVDTPPLILTEGGLIRAGVHPELEGMRGQLIEDRDWLVDLEARE 522
Query: 1019 Q 1019
+
Sbjct: 523 R 523
Score = 37 (18.1 bits), Expect = 2.2e-61, Sum P(4) = 2.2e-61
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 602 LLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641
LL L ++ + + KA+QS EL+ L R+ L
Sbjct: 440 LLKLPALAEAVAASTSPYLKALQSIPVELERLGEKLRRTL 479
>UNIPROTKB|Q89VX1 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224911 "Bradyrhizobium japonicum USDA 110" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:BA000040 GenomeReviews:BA000040_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:NP_767564.1
ProteinModelPortal:Q89VX1 GeneID:1049823 KEGG:bja:bll0924
PATRIC:21185344 BioCyc:BJAP224911:GJEJ-933-MONOMER Uniprot:Q89VX1
Length = 912
Score = 463 (168.0 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 114/303 (37%), Positives = 179/303 (59%)
Query: 745 NKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDN---FVPNDTNLH---AERE-YCQII 797
++N+VRP VD I +GRHPV++ L N F+ N +L A++ ++
Sbjct: 603 DENYVRPE-VDSSLGFAIE--AGRHPVVEQALKRNGEPFIANACDLSPAPAQKSGQLWLL 659
Query: 798 TGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857
TGPNM GKS ++RQ ALI ++AQ+GSFVPA+ A + ++D +++R+GA+D + +GRSTF+
Sbjct: 660 TGPNMAGKSTFLRQNALIALLAQIGSFVPATRARIGIIDRLFSRVGAADDLARGRSTFMV 719
Query: 858 ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917
E+ E + IL ++LVI+DE+GRGT+T DG++IA+A +++L E +C LF THY ++
Sbjct: 720 EMVETAAILNQAGERALVILDEIGRGTATFDGLSIAWAAIEHLHESNRCRTLFATHYHEL 779
Query: 918 ADIKTKFTGSVG-TYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLA 976
+ K T V + G +V +L++V+PG ++ S+G +VA+LA
Sbjct: 780 TALSAKLPRMFNATVRVK-----EWQG--------NVVFLHEVLPGSADRSYGIQVAKLA 826
Query: 977 QLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGR 1036
LPP+ I+RA + AKLEA+ R Q A D L + + A E P S +
Sbjct: 827 GLPPAVITRAKSVLAKLEAQ--DRGQTARALADDLPLFAVPSRAAAEAAPPSEAELLMDA 884
Query: 1037 VEA 1039
V+A
Sbjct: 885 VKA 887
Score = 178 (67.7 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 59/199 (29%), Positives = 91/199 (45%)
Query: 75 PIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA 134
P TP+ Q + TP+ +Q +E+K + +LL +G + F EDAE+A+K LGI
Sbjct: 12 PDETPAPQAEAAARVTPMMEQYLEIKAAHQGLLLFYRMGDFYELFFEDAEIASKTLGIVL 71
Query: 135 -----HLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTET-AAIKAHGPGKAGPFGR 188
H + +P R ++ RL++AG +V V +QTE AA KA G R
Sbjct: 72 TKRGKHQGADIPMCGVPVERAEDYLHRLISAGHRVAVCEQTEDPAAAKARG--NKSVVRR 129
Query: 189 GLSALYTKATLXXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVV 248
G+ L T TL +NYL+ + + R+ GD R G+
Sbjct: 130 GVVRLVTPGTLTEDTLLDARA------NNYLLAIA-------RARSSTGGD----RFGLA 172
Query: 249 AVEISTGDVVYGEFNDGFL 267
++IST + + E + G L
Sbjct: 173 WIDISTAEFMVTECSGGEL 191
Score = 110 (43.8 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 35/117 (29%), Positives = 59/117 (50%)
Query: 356 SAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEV 415
+ ++G+ + L A + + ++ + + R L R SG+ M + T LE+
Sbjct: 249 ATMDGLAQLTRLEATAASAAVTYVDRTQVGRHPPLSPPAREASGAT-MAIDPATRANLEL 307
Query: 416 LRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSE-IAES 471
R + G G+LL ++ T+T GSRLL + + PL D I+ RLDAV +A+S
Sbjct: 308 TRTLA-GERRGSLLDAIDCTVTSAGSRLLAQRLAAPLTDAPAIARRLDAVGAFVADS 363
Score = 40 (19.1 bits), Expect = 1.1e-60, Sum P(4) = 1.1e-60
Identities = 9/38 (23%), Positives = 18/38 (47%)
Query: 512 SPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQL 549
+PD+ R + R+ P + + I+ A + L +L
Sbjct: 376 APDMSRALARLSVGRGGPRDLAGLRDGIIAADQVLARL 413
>RGD|2322311 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000790 "nuclear chromatin" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003682 "chromatin
binding" evidence=ISO] [GO:0003684 "damaged DNA binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0008340 "determination of adult lifespan"
evidence=ISO] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISO] [GO:0009411 "response to UV"
evidence=ISO] [GO:0016446 "somatic hypermutation of immunoglobulin
genes" evidence=ISO] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISO] [GO:0030983 "mismatched
DNA binding" evidence=IEA;ISO] [GO:0032137 "guanine/thymine mispair
binding" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=ISO] [GO:0045190 "isotype switching" evidence=ISO]
[GO:0045910 "negative regulation of DNA recombination"
evidence=ISO] [GO:0051096 "positive regulation of helicase
activity" evidence=ISO] [GO:0097193 "intrinsic apoptotic signaling
pathway" evidence=ISO] [GO:0042803 "protein homodimerization
activity" evidence=ISO] [GO:0043570 "maintenance of DNA repeat
elements" evidence=ISO] [GO:0000287 "magnesium ion binding"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0003690 "double-stranded DNA binding"
evidence=ISO] [GO:0016887 "ATPase activity" evidence=ISO]
[GO:0032142 "single guanine insertion binding" evidence=ISO]
[GO:0032143 "single thymine insertion binding" evidence=ISO]
[GO:0032357 "oxidized purine DNA binding" evidence=ISO] [GO:0032405
"MutLalpha complex binding" evidence=ISO] [GO:0043531 "ADP binding"
evidence=ISO] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 RGD:2322311 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0000287 GO:GO:0043531
GO:GO:0003682 GO:GO:0016887 GO:GO:0006298 GO:GO:0000790
GO:GO:0045190 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 EMBL:CH473947 GO:GO:0016446 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 OrthoDB:EOG4CG07F IPI:IPI00369351
RefSeq:XP_002726765.1 RefSeq:XP_002729643.2
Ensembl:ENSRNOT00000021923 GeneID:100360342 KEGG:rno:100360342
UCSC:RGD:2322311 Uniprot:D4A0U9
Length = 1361
Score = 622 (224.0 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 192/624 (30%), Positives = 297/624 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F S M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 723 GAVFTK--ASQRMVLDAVTLSNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCA 780
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC + IS RLDA+ ++ + +E V +K D+ + + + + S L S
Sbjct: 781 PLCSPSAISDRLDAIEDLMAVPD--KVAE-VADLLKKLPDLERLLSKIHNV-GSPLKSQN 836
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ + + + SKTL +
Sbjct: 837 H-PDT-RAI--MYEETTYSKKKIIDFLSALEGFKVMCKITRLMEDVADGFKSKTLKQVVT 892
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 893 LQTKSPKGRFPDLTAELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 952
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E LD R ++G RN+ + + + +E+P NF +P + ++ STKK RY
Sbjct: 953 EYLDKQ----RSRIGCRNIVYWGIGRNRYQLEIPENFATRNLPEEY-ELKSTKKGCKRYW 1007
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + F + ++ S
Sbjct: 1008 TKVIEKKLSNLINAEERRDASLKDCMRRLFYNFDKNHKDWQSAVECTAVLDVLLCLASYS 1067
Query: 744 RNKN--FVRPVFV---DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE----- 792
+ + RPV + +D P + + RHP + T D+F+PND + E +
Sbjct: 1068 QGGDGPMCRPVLLLPGEDTHPF-LELKGSRHPCITKTFFGDDFIPNDILIGCEEDAEADG 1126
Query: 793 --YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
YC ++TGPNMGGKS IRQ L+ +MAQ+G +VPA L +D ++TR+GASD I
Sbjct: 1127 KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQMGCYVPAELCRLTPVDRVFTRLGASDRIMS 1186
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF EL+E + ILR+ TA SLV+VDELGRGT+T DG AIA A + L E KC LF
Sbjct: 1187 GESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIASAVVKELAETIKCRTLF 1246
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
THY + + +K V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1247 STHYHSLVEDYSKNV-CVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGF 1301
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
A+LA LP I + A + E
Sbjct: 1302 NAARLANLPEEVIQKGHRKAREFE 1325
Score = 77 (32.2 bits), Expect = 2.7e-60, Sum P(2) = 2.7e-60
Identities = 22/83 (26%), Positives = 40/83 (48%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ + K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 409 TPGMRRWWQFKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLI-FMKGNWAHSGFPEIA 467
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
LV G+KV V+QTET
Sbjct: 468 FGRFSDSLVQKGYKVARVEQTET 490
>MGI|MGI:1343961 [details] [associations]
symbol:Msh6 "mutS homolog 6 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IGI;IMP] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003684 "damaged DNA binding" evidence=IGI;IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO] [GO:0006298
"mismatch repair" evidence=ISO;IGI;IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0008630 "intrinsic apoptotic signaling
pathway in response to DNA damage" evidence=IMP] [GO:0009411
"response to UV" evidence=IMP] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IMP]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=ISO;IDA] [GO:0043570 "maintenance of
DNA repeat elements" evidence=IBA] [GO:0045190 "isotype switching"
evidence=IMP] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO;IMP] [GO:0051096 "positive regulation
of helicase activity" evidence=ISO] [GO:0097193 "intrinsic
apoptotic signaling pathway" evidence=IMP] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 MGI:MGI:1343961 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0003684 GO:GO:0043531 GO:GO:0003682
GO:GO:0000790 GO:GO:0045190 GO:GO:0007131 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0043570 GO:GO:0045910 SMART:SM00293
GO:GO:0008094 GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 HOGENOM:HOG000243127
KO:K08737 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 CTD:2956
GeneTree:ENSGT00550000075024 HOVERGEN:HBG000101 OrthoDB:EOG4CG07F
EMBL:U42190 EMBL:AF031087 EMBL:AF031085 EMBL:AF031086 EMBL:BC051160
EMBL:BC051634 EMBL:U61388 EMBL:U61389 IPI:IPI00323790
RefSeq:NP_034960.1 UniGene:Mm.18210 ProteinModelPortal:P54276
SMR:P54276 IntAct:P54276 STRING:P54276 PhosphoSite:P54276
PaxDb:P54276 PRIDE:P54276 Ensembl:ENSMUST00000005503 GeneID:17688
KEGG:mmu:17688 InParanoid:Q6GTK8 ChiTaRS:MSH6 NextBio:292264
Bgee:P54276 CleanEx:MM_MSH6 Genevestigator:P54276
GermOnline:ENSMUSG00000005370 Uniprot:P54276
Length = 1358
Score = 618 (222.6 bits), Expect = 3.0e-60, Sum P(2) = 3.0e-60
Identities = 195/624 (31%), Positives = 295/624 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F S M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 720 GAVFTK--ASQRMVLDAVTLNNLEIFLNGTNGSTEGTLLERLDTCHTPFGKRLLKQWLCA 777
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC + IS RLDAV ++ + +E V +K D+ + + + + S L S
Sbjct: 778 PLCSPSAISDRLDAVEDLMAVPD--KVTE-VADLLKKLPDLERLLSKIHNV-GSPLKSQN 833
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLH-IDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ + E TSKTL +
Sbjct: 834 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVMCKVSGLLEEVAGGFTSKTLKQVVT 889
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 890 LQSKSPKGRFPDLTAELQRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 949
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E LD R +LG +++ + + + +E+P NF +P + ++ STKK RY
Sbjct: 950 EYLDKQ----RSRLGCKSIVYWGIGRNRYQLEIPENFATRNLPEEY-ELKSTKKGCKRYW 1004
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + F + ++ S
Sbjct: 1005 TKTIEKKLANLINAEERRDTSLKDCMRRLFCNFDKNHKDWQSAVECIAVLDVLLCLANYS 1064
Query: 744 RNKN--FVRPVFV---DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE----- 792
+ + RP V +D P + RHP + T D+F+PND + E E
Sbjct: 1065 QGGDGPMCRPEIVLPGEDTHPF-LEFKGSRHPCITKTFFGDDFIPNDILIGCEEEAEEHG 1123
Query: 793 --YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
YC ++TGPNMGGKS IRQ L+ +MAQ+G +VPA L +D ++TR+GASD I
Sbjct: 1124 KAYCVLVTGPNMGGKSTLIRQAGLLAVMAQLGCYVPAEKCRLTPVDRVFTRLGASDRIMS 1183
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF EL+E + ILR+ TA SLV+VDELGRGT+T DG AIA A + L E KC LF
Sbjct: 1184 GESTFFVELSETASILRHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLF 1243
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
THY + + +K V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1244 STHYHSLVEDYSKSV-CVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGF 1298
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
A+LA LP I + A + E
Sbjct: 1299 NAARLANLPEEVIQKGHRKAREFE 1322
Score = 81 (33.6 bits), Expect = 3.0e-60, Sum P(2) = 3.0e-60
Identities = 23/83 (27%), Positives = 41/83 (49%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ +LK++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 406 TPGMRKWWQLKSQNFDLVIFYKVGKFYELYHMDAVIGVSELGLI-FMKGNWAHSGFPEIA 464
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
LV G+KV V+QTET
Sbjct: 465 FGRFSDSLVQKGYKVARVEQTET 487
>TIGR_CMR|VC_0535 [details] [associations]
symbol:VC_0535 "DNA mismatch repair protein MutS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD PIR:B82312 RefSeq:NP_230186.1 ProteinModelPortal:Q9KUI6
SMR:Q9KUI6 DNASU:2615204 GeneID:2615204 KEGG:vch:VC0535
PATRIC:20080174 Uniprot:Q9KUI6
Length = 862
Score = 498 (180.4 bits), Expect = 6.1e-60, Sum P(3) = 6.1e-60
Identities = 128/413 (30%), Positives = 208/413 (50%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPANF 664
+I++G +E+ R A E L+ L R + G+ L+ + +V G + +
Sbjct: 431 VIADGYSAELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSH 490
Query: 665 KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
VP ++ + + K RY E+ D++ + + + W+ + +
Sbjct: 491 LVPPHYVRRQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQ 550
Query: 725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPND 784
+ N + RP V + IHI GRHPV++ ++ + F+ N
Sbjct: 551 QLAASVAQLDVLQNLAERAENLEYCRPTLVQE---AGIHIQGGRHPVVERVMNEPFIANP 607
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
L+ +R IITGPNMGGKS Y+RQ ALI +MA +GS+VPA SA + LD I+TR+GA
Sbjct: 608 IELNPQRRML-IITGPNMGGKSTYMRQTALIALMAHIGSYVPAESASIGPLDRIFTRIGA 666
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
SD + GRSTF+ E+ E + IL N T SLV++DE+GRGTST+DG+++A+A+ ++L +
Sbjct: 667 SDDLASGRSTFMVEMTETANILHNATRNSLVLMDEIGRGTSTYDGLSLAWASAEWLAKEI 726
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD-VTYLYKVVPGV 963
M LF THY ++ ++ H++ + H +D+ D + +++ V G
Sbjct: 727 GAMTLFATHYFELTELPNVLP------HLANV--H-----LDAVEHGDGIAFMHAVQEGA 773
Query: 964 SESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKR-DLLVKLS 1015
+ S+G VA LA +P I A +LE S + R R D+ +LS
Sbjct: 774 ASKSYGLAVAGLAGVPKPVIKNARAKLQQLELLSSQPAETRKPSRVDIANQLS 826
Score = 130 (50.8 bits), Expect = 6.1e-60, Sum P(3) = 6.1e-60
Identities = 25/67 (37%), Positives = 43/67 (64%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
L A T + LE+ N + G++ TL +++H T GSR+L+RW+ P+ D ++ RLDA
Sbjct: 274 LDAATRRNLELTHNLAGGTD-NTLAEVLDHCATPMGSRMLKRWIHQPMRDNATLNQRLDA 332
Query: 465 VSEIAES 471
++E+ E+
Sbjct: 333 ITELKET 339
Score = 108 (43.1 bits), Expect = 6.1e-60, Sum P(3) = 6.1e-60
Identities = 31/108 (28%), Positives = 53/108 (49%)
Query: 78 TPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY---- 133
+PS +H +TP+ QQ + LK + PD+LL +G + F +DA+ A+++L I
Sbjct: 7 SPSESLSH---HTPMMQQYLRLKAENPDILLFYRMGDFYELFYDDAKRASELLDISLTKR 63
Query: 134 -AHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGP 180
A A +P + ++ +LV G V + +Q A + GP
Sbjct: 64 GASAGEPIPMAGVPFHAVEGYLAKLVQMGESVAICEQIGDPAT-SKGP 110
Score = 69 (29.3 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 52/264 (19%), Positives = 99/264 (37%)
Query: 495 EPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGE 554
E Y L VL +G DI+R + R+ R+A P + + A+ +QL +LH
Sbjct: 338 ETALYGELHPVLKQIG---DIERILARLALRSARPRDLARLRHAM----QQLPELH---- 386
Query: 555 YREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS 614
V S+ L + + T + P + + LL KE + + +I++G +
Sbjct: 387 ---SVMSELKQPHLTE--LRTHAEP--MDELCDLLERAIKENPPVV-IRDGGVIADGYSA 438
Query: 615 EVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPANFKVPLNWAK 672
E+ R A E L+ L R + G+ L+ + +V G + + VP ++ +
Sbjct: 439 ELDEWRDLANGATEFLERLEAEERDRHGIDTLKVGYNNVHGFYIQVSRGQSHLVPPHYVR 498
Query: 673 VNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXX 732
+ K RY E+ D++ + + + W+ + +
Sbjct: 499 RQTLKNAERYIIEELKQHEDKVLNSKSRALALEKQLWEELFDLLMPHLEQLQQLAASVAQ 558
Query: 733 XXXXXXXXXXSRNKNFVRPVFVDD 756
+ N + RP V +
Sbjct: 559 LDVLQNLAERAENLEYCRPTLVQE 582
Score = 37 (18.1 bits), Expect = 5.4e-12, Sum P(4) = 5.4e-12
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 1023 ENMPVSPESFYLGRVEASEDLISAYRDLFL 1052
E+ + P R+ AS+DL S R F+
Sbjct: 650 ESASIGPLDRIFTRIGASDDLASG-RSTFM 678
>UNIPROTKB|E1B9Q4 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0051096 "positive regulation of helicase activity"
evidence=IEA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IEA] [GO:0045190 "isotype switching"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0032405
"MutLalpha complex binding" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0000400 "four-way junction DNA
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0000287 GO:GO:0043531 GO:GO:0003682 GO:GO:0016887
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 InterPro:IPR000313
PROSITE:PS50812 GO:GO:0045910 SMART:SM00293 GO:GO:0016446
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 CTD:2956 GeneTree:ENSGT00550000075024
EMBL:DAAA02030744 IPI:IPI00714742 RefSeq:NP_001179666.1
UniGene:Bt.98842 Ensembl:ENSBTAT00000001867 GeneID:540526
KEGG:bta:540526 NextBio:20878683 Uniprot:E1B9Q4
Length = 1360
Score = 613 (220.8 bits), Expect = 8.9e-60, Sum P(2) = 8.9e-60
Identities = 191/628 (30%), Positives = 299/628 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F + M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 722 GAVFAK--ANQRMVLDAVTLNNLEIFLNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA 779
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC+ + I+ RLDA+ ++ + + SE V +K D+ + + + + S L S
Sbjct: 780 PLCNPHAINDRLDAIEDLM--VVPDKISEVVDLL-KKLPDLERLLSKIHNV-GSPLKSQN 835
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ I E + SK L L
Sbjct: 836 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVICKIIGIMEEVIDDFKSKILKQVLT 891
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 892 LQTKSPEGRFPDLTSELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 951
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E L+ R ++G R + + + + +E+P NF +P + ++ STKK RY
Sbjct: 952 EYLEKQ----RSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEY-ELKSTKKGCKRYW 1006
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + F Y ++ S
Sbjct: 1007 TKTIEKKLGNLINAEERRDASLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLTNYS 1066
Query: 744 RNKN--FVRPVFV--DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------ 792
R + RP+ + ++ P + + RHP + T D+F+PND + E E
Sbjct: 1067 RGGDGPMCRPIILLPEEDTPPFLDLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGK 1126
Query: 793 -YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
YC ++TGPNMGGKS +RQ L+ IMAQ+G +VPA L +D ++TR+GASD I G
Sbjct: 1127 AYCVLVTGPNMGGKSTLMRQAGLLAIMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSG 1186
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
STF EL+E + IL + TA SLV+VDELGRGT+T DG AIA A + L E+ KC LF
Sbjct: 1187 ESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFS 1246
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFK 971
THY + + ++ +V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1247 THYHSLVEDYSQNV-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFN 1301
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSS 999
A+LA LP I + A + E S
Sbjct: 1302 AARLANLPEEVIQKGHRKAREFEKMTQS 1329
Score = 82 (33.9 bits), Expect = 8.9e-60, Sum P(2) = 8.9e-60
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 406 TPGMRKWWQIKSQNFDLVIFYKVGKFYEMYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 464
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 465 FGRYSDSLVQKGYKVARVEQTET 487
>UNIPROTKB|F5H2F9 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0003682
GO:GO:0006298 GO:GO:0000790 GO:GO:0045190 GO:GO:0045910
GO:GO:0016446 EMBL:AC006509 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 HGNC:HGNC:7329 IPI:IPI01013073
ProteinModelPortal:F5H2F9 SMR:F5H2F9 Ensembl:ENST00000538136
ArrayExpress:F5H2F9 Bgee:F5H2F9 Uniprot:F5H2F9
Length = 1058
Score = 604 (217.7 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 186/610 (30%), Positives = 293/610 (48%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+ PLC+ I+ RL
Sbjct: 431 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRL 490
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
DA+ ++ + + SE V + +K D+ + + + + S L S PD R I +
Sbjct: 491 DAIEDLM--VVPDKISEVV-ELLKKLPDLERLLSKIHNV-GSPLKSQNH-PD-SRAI--M 542
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL-LKRLILTASSPA 580
+ T + I + L K + ++ I E + SK L + L+ P
Sbjct: 543 YEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPD 602
Query: 581 VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAKEELDSLINMCRK 639
+ + + + + E A + L+ + + + +A R+ QS E L+ R
Sbjct: 603 LTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ----RN 658
Query: 640 QLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYHSPEVLTALDQLA 695
++G R + + + + +E+P NF +P + ++ STKK RY + + L L
Sbjct: 659 RIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYWTKTIEKKLANLI 717
Query: 696 LANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVF 753
A E + + F Y ++ SR + RPV
Sbjct: 718 NAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI 777
Query: 754 V-DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE-------YCQIITGPNMGG 804
+ + P + + RHP + T D+F+PND + E E YC ++TGPNMGG
Sbjct: 778 LLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGG 837
Query: 805 KSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASY 864
KS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G STF EL+E +
Sbjct: 838 KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 897
Query: 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924
IL + TA SLV+VDELGRGT+T DG AIA A + L E KC LF THY + + ++
Sbjct: 898 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 957
Query: 925 TGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCIS 984
+V H++ + ++ P S + +T+LYK + G S+GF A+LA LP I
Sbjct: 958 V-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1012
Query: 985 RATVIAAKLE 994
+ A + E
Sbjct: 1013 KGHRKAREFE 1022
Score = 81 (33.6 bits), Expect = 2.4e-59, Sum P(2) = 2.4e-59
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 105 TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 163
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 164 FGRYSDSLVQKGYKVARVEQTET 186
>UNIPROTKB|F1PM27 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 Pfam:PF00855 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812
SMART:SM00293 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000004197 Uniprot:F1PM27
Length = 1263
Score = 605 (218.0 bits), Expect = 6.2e-59, Sum P(2) = 6.2e-59
Identities = 188/628 (29%), Positives = 298/628 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F + M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 651 GAVFAK--ANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA 708
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC I+ RLDA+ ++ + + S+ V +K D+ + + + + S L S
Sbjct: 709 PLCSPYAINDRLDAIEDLM--VVPDKISD-VADLLKKLPDLERLLSKIHNV-GSPLKSQN 764
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ I E + SK L +
Sbjct: 765 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVIT 820
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 821 LQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 880
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E L+ R ++G R + + + + +E+P NF +P + ++ STKK RY
Sbjct: 881 EYLEKQ----RSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEY-ELKSTKKGCKRYW 935
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + + F Y ++ S
Sbjct: 936 TKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYS 995
Query: 744 RNKN--FVRPVFV--DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------ 792
+ + RPV + ++ P + + RHP + T D+F+PND + E E
Sbjct: 996 QGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGK 1055
Query: 793 -YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
YC ++TGPNMGGKS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G
Sbjct: 1056 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSG 1115
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
STF EL+E + IL + TA SLV+VDELGRGT+T DG AIA A + L E+ KC LF
Sbjct: 1116 ESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFS 1175
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFK 971
THY + + ++ +V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1176 THYHSLVEDYSQNV-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFN 1230
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSS 999
A+LA LP I + A + E S
Sbjct: 1231 AARLANLPEEVIQKGHRKAREFEKMTQS 1258
Score = 81 (33.6 bits), Expect = 6.2e-59, Sum P(2) = 6.2e-59
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA LG+ + N+ + P
Sbjct: 335 TPGMRKWWQIKSQNFDLIIFYKVGKFYELYHMDALTGVNELGL-VFMKGNWAHSGFPEIA 393
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 394 FGRYSDSLVQKGYKVARVEQTET 416
>UNIPROTKB|B4DF41 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AC006509 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 UniGene:Hs.445052 HGNC:HGNC:7329
HOVERGEN:HBG000101 EMBL:AK293921 IPI:IPI01014931 SMR:B4DF41
STRING:B4DF41 Ensembl:ENST00000540021 Uniprot:B4DF41
Length = 1230
Score = 604 (217.7 bits), Expect = 7.0e-59, Sum P(2) = 7.0e-59
Identities = 186/610 (30%), Positives = 293/610 (48%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+ PLC+ I+ RL
Sbjct: 603 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRL 662
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
DA+ ++ + + SE V + +K D+ + + + + S L S PD R I +
Sbjct: 663 DAIEDLM--VVPDKISEVV-ELLKKLPDLERLLSKIHNV-GSPLKSQNH-PD-SRAI--M 714
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL-LKRLILTASSPA 580
+ T + I + L K + ++ I E + SK L + L+ P
Sbjct: 715 YEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPD 774
Query: 581 VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAKEELDSLINMCRK 639
+ + + + + E A + L+ + + + +A R+ QS E L+ R
Sbjct: 775 LTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ----RN 830
Query: 640 QLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYHSPEVLTALDQLA 695
++G R + + + + +E+P NF +P + ++ STKK RY + + L L
Sbjct: 831 RIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYWTKTIEKKLANLI 889
Query: 696 LANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVF 753
A E + + F Y ++ SR + RPV
Sbjct: 890 NAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI 949
Query: 754 V-DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE-------YCQIITGPNMGG 804
+ + P + + RHP + T D+F+PND + E E YC ++TGPNMGG
Sbjct: 950 LLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGG 1009
Query: 805 KSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASY 864
KS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G STF EL+E +
Sbjct: 1010 KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 1069
Query: 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924
IL + TA SLV+VDELGRGT+T DG AIA A + L E KC LF THY + + ++
Sbjct: 1070 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 1129
Query: 925 TGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCIS 984
+V H++ + ++ P S + +T+LYK + G S+GF A+LA LP I
Sbjct: 1130 V-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1184
Query: 985 RATVIAAKLE 994
+ A + E
Sbjct: 1185 KGHRKAREFE 1194
Score = 81 (33.6 bits), Expect = 7.0e-59, Sum P(2) = 7.0e-59
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 277 TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 335
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 336 FGRYSDSLVQKGYKVARVEQTET 358
>TIGR_CMR|SO_3431 [details] [associations]
symbol:SO_3431 "DNA mismatch repair protein MutS"
species:211586 "Shewanella oneidensis MR-1" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_718984.1
ProteinModelPortal:Q8EBR9 SMR:Q8EBR9 GeneID:1171106
KEGG:son:SO_3431 PATRIC:23526550 Uniprot:Q8EBR9
Length = 856
Score = 491 (177.9 bits), Expect = 7.9e-59, Sum P(3) = 7.9e-59
Identities = 132/432 (30%), Positives = 218/432 (50%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGI-THLIELPAN 663
+I G +E+ R + A + L L +++ G+ L+ + V G + L +N
Sbjct: 428 VIREGYNAELDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSN 487
Query: 664 FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVC-RAAWDSFLKEFGGYYAE 722
+VPLN+ + + K RY +PE L ++ L+++ + + WD E
Sbjct: 488 -QVPLNYQRRQTLKNMERYITPE-LKEYEEKVLSSQGKALALEKQLWDELFDLILPKLHE 545
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
+ + P + + + I +GRHPV++ + F+
Sbjct: 546 LQDFARAAAELDVLSNFAERAETLGYTSPELSSE---IGVKIEAGRHPVVERVSQTPFIA 602
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
N LH +R I+TGPNMGGKS Y+RQVALI +MA +G FVPA A + +D I+TR+
Sbjct: 603 NPVTLHNQRRML-IVTGPNMGGKSTYMRQVALITLMAHIGCFVPAERATIGPIDRIFTRI 661
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
GASD + GRSTF+ E+ E + IL N TAQSLV++DE+GRGTST+DG+++A++ +YL +
Sbjct: 662 GASDDLASGRSTFMVEMTETANILHNATAQSLVLMDEIGRGTSTYDGLSLAWSAAEYLAQ 721
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD-VTYLYKVVP 961
M LF THY ++ + +G Y+V H +D+ +D + +++ V
Sbjct: 722 QVGAMTLFATHYFELTQLPELMSG---VYNV-----H-----LDAIEHEDTIAFMHAVQE 768
Query: 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQ-EQE 1020
G + S+G +VA LA +P I A +LE+ +V+ L+ L + E
Sbjct: 769 GAASKSYGLQVAALAGVPARVIKAAKHKLHQLESR-DHQVEGTKTPIQTLLALPEPVENP 827
Query: 1021 AQENMP-VSPES 1031
A + ++P++
Sbjct: 828 AVSKLKAINPDN 839
Score = 135 (52.6 bits), Expect = 7.9e-59, Sum P(3) = 7.9e-59
Identities = 35/105 (33%), Positives = 60/105 (57%)
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYG 426
L++QA ++++K + + A R + + + L A T + LE+ +N S G +
Sbjct: 234 LSLQAAGCLMQYVKDTQRTALPHINAITR-FNQTDTIVLDAATRRNLELTQNLSGGRD-N 291
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAES 471
TL ++++T T GSR+L+RW+ PL D LI AR AV+E+ E+
Sbjct: 292 TLAAVLDNTATAMGSRMLQRWIHQPLRDHALILARQTAVNELLET 336
Score = 100 (40.3 bits), Expect = 7.9e-59, Sum P(3) = 7.9e-59
Identities = 35/132 (26%), Positives = 60/132 (45%)
Query: 73 LNPIPTPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI 132
+NPI T + K+TP+ +Q + +K ++ D+LL +G + F +DA+ A+++LGI
Sbjct: 1 MNPIDTDDLE-----KHTPMMRQYLSMKAEHHDMLLFYRMGDFYELFYDDAKRASELLGI 55
Query: 133 YAHLDHN-----FMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFG 187
A IP + ++ +LV G V + +Q A GP
Sbjct: 56 SLTARGKSGGDPIPMAGIPYHAVEGYLAKLVQIGQSVAICEQIGDPATSK------GPVE 109
Query: 188 RGLSALYTKATL 199
R + + T TL
Sbjct: 110 RKVVRIVTPGTL 121
Score = 79 (32.9 bits), Expect = 2.4e-13, Sum P(3) = 2.4e-13
Identities = 52/223 (23%), Positives = 97/223 (43%)
Query: 493 IVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAI-LYAGKQLQQLHI 551
++E + L L +LG DI+R + R+ RTA P +F + QA+ L QL +
Sbjct: 333 LLETAVHESLHEQLKALG---DIERIMARLALRTARPRDFARLRQALSLLPQLQLSLSQL 389
Query: 552 DGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNG 611
+ K+ + L ++ +L A++ L+ D G +I G
Sbjct: 390 SAPHTVKL-GQLLGEFPQEQQLL---EHAIVDNPPMLIR-------DGG------VIREG 432
Query: 612 QFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGI-THLIELPANFKVPL 668
+E+ R + A + L L +++ G+ L+ + V G + L +N +VPL
Sbjct: 433 YNAELDEWRGLSEGASDYLVQLEAREKERTGIATLKVGYNRVHGYYIEVSRLQSN-QVPL 491
Query: 669 NWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVC-RAAWD 710
N+ + + K RY +PE L ++ L+++ + + WD
Sbjct: 492 NYQRRQTLKNMERYITPE-LKEYEEKVLSSQGKALALEKQLWD 533
Score = 39 (18.8 bits), Expect = 2.6e-09, Sum P(3) = 2.6e-09
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 979 PPSCISRATVIAAKLEAEVSS-RVQNRSAKRDLLVKLSDQEQE 1020
PP I VI AE+ R + A D LV+L +E+E
Sbjct: 419 PPMLIRDGGVIREGYNAELDEWRGLSEGAS-DYLVQLEAREKE 460
>UNIPROTKB|P52701 [details] [associations]
symbol:MSH6 "DNA mismatch repair protein Msh6" species:9606
"Homo sapiens" [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=ISS;IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=ISS;IBA] [GO:0009411 "response to
UV" evidence=ISS;IBA] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=ISS;IBA] [GO:0045190 "isotype
switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0042803 "protein homodimerization activity"
evidence=IPI] [GO:0032405 "MutLalpha complex binding" evidence=IDA]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IDA;IMP] [GO:0032301
"MutSalpha complex" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032142 "single guanine insertion
binding" evidence=IDA] [GO:0032143 "single thymine insertion
binding" evidence=IDA] [GO:0032357 "oxidized purine DNA binding"
evidence=IDA] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA]
[GO:0003690 "double-stranded DNA binding" evidence=IDA] [GO:0097193
"intrinsic apoptotic signaling pathway" evidence=ISS] [GO:0008340
"determination of adult lifespan" evidence=ISS] [GO:0016447
"somatic recombination of immunoglobulin gene segments"
evidence=ISS] [GO:0006281 "DNA repair" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0045910
"negative regulation of DNA recombination" evidence=IDA]
[GO:0051096 "positive regulation of helicase activity"
evidence=IDA] [GO:0006200 "ATP catabolic process" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0008340 GO:GO:0009411 GO:GO:0008630
GO:GO:0003684 GO:GO:0003682 GO:GO:0000790 GO:GO:0045190 MIM:276300
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0045910 Orphanet:144 SMART:SM00293 MIM:608089 GO:GO:0008094
GO:GO:0016446 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GO:GO:0051096 PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F
PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E PDBsum:2O8F
HOGENOM:HOG000243127 KO:K08737 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
CTD:2956 EMBL:U73737 EMBL:U73732 EMBL:U73733 EMBL:U73734
EMBL:U73736 EMBL:D89645 EMBL:D89646 EMBL:AY082894 EMBL:BC004246
EMBL:U54777 EMBL:U28946 IPI:IPI00106847 IPI:IPI00384456 PIR:JC5839
RefSeq:NP_000170.1 UniGene:Hs.445052 PDB:2GFU PDBsum:2GFU
ProteinModelPortal:P52701 SMR:P52701 DIP:DIP-32972N IntAct:P52701
MINT:MINT-131993 STRING:P52701 PhosphoSite:P52701 DMDM:68067672
PaxDb:P52701 PeptideAtlas:P52701 PRIDE:P52701 DNASU:2956
Ensembl:ENST00000234420 GeneID:2956 KEGG:hsa:2956 UCSC:uc002rwc.2
UCSC:uc002rwd.4 GeneCards:GC02P048010 HGNC:HGNC:7329 HPA:CAB009091
HPA:HPA028376 HPA:HPA028446 MIM:600678 MIM:614350
neXtProt:NX_P52701 PharmGKB:PA184 HOVERGEN:HBG000101
InParanoid:P52701 OrthoDB:EOG4CG07F PhylomeDB:P52701
EvolutionaryTrace:P52701 GenomeRNAi:2956 NextBio:11716
PMAP-CutDB:P52701 ArrayExpress:P52701 Bgee:P52701 CleanEx:HS_MSH6
Genevestigator:P52701 GermOnline:ENSG00000116062 Uniprot:P52701
Length = 1360
Score = 604 (217.7 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 186/610 (30%), Positives = 293/610 (48%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+ PLC+ I+ RL
Sbjct: 733 MVLDAVTLNNLEIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRL 792
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
DA+ ++ + + SE V + +K D+ + + + + S L S PD R I +
Sbjct: 793 DAIEDLM--VVPDKISEVV-ELLKKLPDLERLLSKIHNV-GSPLKSQNH-PD-SRAI--M 844
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL-LKRLILTASSPA 580
+ T + I + L K + ++ I E + SK L + L+ P
Sbjct: 845 YEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQTKNPEGRFPD 904
Query: 581 VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAKEELDSLINMCRK 639
+ + + + + E A + L+ + + + +A R+ QS E L+ R
Sbjct: 905 LTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQ----RN 960
Query: 640 QLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYHSPEVLTALDQLA 695
++G R + + + + +E+P NF +P + ++ STKK RY + + L L
Sbjct: 961 RIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYWTKTIEKKLANLI 1019
Query: 696 LANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVF 753
A E + + F Y ++ SR + RPV
Sbjct: 1020 NAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVI 1079
Query: 754 V-DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE-------YCQIITGPNMGG 804
+ + P + + RHP + T D+F+PND + E E YC ++TGPNMGG
Sbjct: 1080 LLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGG 1139
Query: 805 KSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASY 864
KS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G STF EL+E +
Sbjct: 1140 KSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETAS 1199
Query: 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924
IL + TA SLV+VDELGRGT+T DG AIA A + L E KC LF THY + + ++
Sbjct: 1200 ILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQN 1259
Query: 925 TGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCIS 984
+V H++ + ++ P S + +T+LYK + G S+GF A+LA LP I
Sbjct: 1260 V-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFNAARLANLPEEVIQ 1314
Query: 985 RATVIAAKLE 994
+ A + E
Sbjct: 1315 KGHRKAREFE 1324
Score = 81 (33.6 bits), Expect = 1.2e-58, Sum P(2) = 1.2e-58
Identities = 22/83 (26%), Positives = 42/83 (50%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 407 TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 465
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 466 FGRYSDSLVQKGYKVARVEQTET 488
>CGD|CAL0006305 [details] [associations]
symbol:MSH6 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0000710 "meiotic mismatch repair" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0032138 "single base
insertion or deletion binding" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0006305 GO:GO:0005524 GO:GO:0006298
EMBL:AACQ01000010 EMBL:AACQ01000009 GO:GO:0030983 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
PIRSF:PIRSF037677 RefSeq:XP_722156.1 RefSeq:XP_722270.1
ProteinModelPortal:Q5AL33 STRING:Q5AL33 GeneID:3636059
GeneID:3636161 KEGG:cal:CaO19.12411 KEGG:cal:CaO19.4945
Uniprot:Q5AL33
Length = 1214
Score = 502 (181.8 bits), Expect = 1.3e-58, Sum P(3) = 1.3e-58
Identities = 150/505 (29%), Positives = 244/505 (48%)
Query: 502 LSSVLT-SLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVT 560
L S+L +L PD++R + R+ T +F+ V+++ I G + V
Sbjct: 684 LRSILQDTLANIPDLERLLARVHGGTLKFRDFLKVIESFE---------SIAGVSSKLVD 734
Query: 561 SKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMII-SNGQFSEVARA 619
+ S +L + + S P + +L+ ++A D+ N +I+ S G E +
Sbjct: 735 FTNVESGMLYKYL--KSFPH---EMRELIQQW-EDAFDREQAKNDIIVPSAGTDEEFDNS 788
Query: 620 RKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKT 679
+ +++ K +LD L+ ++ + + + +LIE+P KVP +W ++ ST K
Sbjct: 789 QASMEDLKTQLDKLLKEYKRTYKSQEICYRDSGKEIYLIEVPFKLKVPGDWKQMGSTSKV 848
Query: 680 IRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXX 739
RY+SPEV T +L E +VC ++F +Y +
Sbjct: 849 KRYYSPEVETLAKELRGQQELHKMVCDTLKIRMYEKFDKHYNVWMQVIQTIANIDCLLAL 908
Query: 740 XXXSRNKNF--VRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQII 797
S + RP ++ + I+ RHP + F+PND L + + ++
Sbjct: 909 TKASETIGYPSCRPKLIEADKGC-INFKELRHPCF--VSTKEFIPNDVQLGGDEPHFGLL 965
Query: 798 TGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857
TG N GKS +R AL I++Q+G ++PA SAEL +D I TR+GA+D+I QG+STF
Sbjct: 966 TGANAAGKSTLMRTTALAIILSQIGCYIPAESAELTPVDRIMTRLGANDNILQGKSTFFV 1025
Query: 858 ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917
EL+E IL N T +SLVI+DELGRG S+ DG AIA + L +L H + + F THY
Sbjct: 1026 ELSETKKILSNATPRSLVILDELGRGGSSSDGFAIAESVLHHLATHVQSLGFFATHY--- 1082
Query: 918 ADIKTKFTGSVGTYHVSYLTSHKV----MGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
GT +S+ T ++ MG + +++T+LYK+ G + SFG VA
Sbjct: 1083 -----------GTLGLSFKTHPQIKQLRMGIVVDSGSRNITFLYKLETGTAPKSFGMNVA 1131
Query: 974 QLAQLPPSCISRATVIAAKLEAEVS 998
+ +P + + A IAAK + S
Sbjct: 1132 SMCGIPDAIVDNAE-IAAKAYEQTS 1155
Score = 150 (57.9 bits), Expect = 1.3e-58, Sum P(3) = 1.3e-58
Identities = 40/126 (31%), Positives = 62/126 (49%)
Query: 344 QNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLER-IMCLGASFR---SLSG 399
+N+D + N+ + +A A + +LK L+ IM LG S +
Sbjct: 551 ENLD--DYSNYPKVLVDFKENHQVAFNAFGGLLYYLKMLKLDTSIMSLGNIHEYHISRNS 608
Query: 400 SMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
+ M L TL LE+L N S+G+ GTL ++N T +G R L++WV HPL + I+
Sbjct: 609 ASHMILDGVTLNNLEILNNTSDGTTKGTLFKLVNRATTSFGKRQLQKWVLHPLFKVDEIN 668
Query: 460 ARLDAV 465
R D+V
Sbjct: 669 QRYDSV 674
Score = 84 (34.6 bits), Expect = 1.3e-58, Sum P(3) = 1.3e-58
Identities = 29/117 (24%), Positives = 49/117 (41%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKV--LGIYAHLDHNFMTASI 145
K+T E+Q ++K+K + ++ + G + + DA +A L I N A I
Sbjct: 314 KFTAFEKQYWQIKSKMWNTVVFFQKGKFYELYENDAVIANTQFDLKIAGGGRANMKLAGI 373
Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGP---FGRGLSALYTKATL 199
P + ++ G+KV V+Q E+ +K G R L + T TL
Sbjct: 374 PEMSFEYWAKEFISHGYKVAKVEQKESMLVKQMRGGATKEEKIIERELKGILTAGTL 430
Score = 43 (20.2 bits), Expect = 2.5e-54, Sum P(3) = 2.5e-54
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 120 GEDAEMAAKVLGIYAHLDHNFMTASIPTFRL---NVHVRRLVNAGF 162
G ++A K+L H DH A P ++ + +LV A +
Sbjct: 502 GNLCQIATKILKFCTHSDHQIWNALNPITEFWDYDIALEQLVKAKY 547
Score = 37 (18.1 bits), Expect = 8.3e-43, Sum P(2) = 8.3e-43
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 473 GSYRTSESVGQHDEKNSDVTIVEP 496
GS+R S SV K++ + + P
Sbjct: 245 GSFRQSSSVATPKPKSTTIKSLTP 268
>UNIPROTKB|A9WFZ9 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:324602 "Chloroflexus aurantiacus J-10-fl" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 EMBL:CP000909 GenomeReviews:CP000909_GR GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 RefSeq:YP_001636542.1 ProteinModelPortal:A9WFZ9
STRING:A9WFZ9 GeneID:5827426 KEGG:cau:Caur_2954 PATRIC:21417221
ProtClustDB:CLSK2477234 BioCyc:CAUR324602:GIXU-3001-MONOMER
Uniprot:A9WFZ9
Length = 966
Score = 534 (193.0 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 170/561 (30%), Positives = 275/561 (49%)
Query: 505 VLTSLGRSPDIQRGITRIFH--RTATPSEFI----------AVMQAILYAGKQLQQLHID 552
V ++L PD++R + RI ATP + AV QA+ L +
Sbjct: 410 VRSALADLPDMERALNRIAQGITVATPRDMTQLRAALRKLPAVAQAVQALLPDLLAAEMP 469
Query: 553 GE--YREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISN 610
GE V + L LL+R L PA++G + L AA++G +I
Sbjct: 470 GEPPLVFDVCADVLD--LLERA-LDDDPPALLGSSNYL------RAAEEGGERPRRVIRP 520
Query: 611 GQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPANFK-VP 667
G + +A + A+E +D L + R++ G+R+L+ + V G I + K +P
Sbjct: 521 GFDQRLDALIRASRHAQEFIDRLESKERERTGIRSLKVGYNQVFGYYIEISRAVDAKLIP 580
Query: 668 LNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXX 727
++ + + RY + E+ L+ A +L + R + E +
Sbjct: 581 AHYERKQTLVNAERYVTEELKYYEGLLSDARLKLVDLERDIFQRLCDELQPHLDRLRATI 640
Query: 728 XXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNL 787
+ +V+P D + I GRHPV++ L + F+ ND +L
Sbjct: 641 AAVARIDALAALAEVAVRGRYVQPRLRTDRV---LRIKQGRHPVVERTLSEPFIGNDIDL 697
Query: 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDS 847
E+ IITGPNM GKS ++RQVALI +MAQ+GSFVPA AE+ ++D I+TR+GA D
Sbjct: 698 DGEQAQILIITGPNMAGKSTFLRQVALITLMAQIGSFVPADEAEIGLVDRIFTRIGAQDD 757
Query: 848 IQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK-- 905
I G+STF+ E+ E + +L T +SL+I+DE+GRGTST+DG+AIA A ++Y+ +H +
Sbjct: 758 IATGQSTFMVEMTETAALLMQSTPRSLIILDEVGRGTSTYDGMAIARAVVEYIHDHPRLG 817
Query: 906 CMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSE 965
C LF THY ++ ++ + V YH++ + + D V +L+++ PG ++
Sbjct: 818 CRTLFATHYHELIALERELP-RVRNYHMAAV-----------ERDGRVVFLHELRPGGAD 865
Query: 966 SSFGFKVAQLAQLPPSCISRATVIAAKLEAE--VSSRVQNRSAKRDLLVKLSDQEQEAQE 1023
S+G VA+LA +PP I RA+ + A LE + SS Q + ++V + Q Q
Sbjct: 866 RSYGIHVAELAGIPPEVIRRASALLADLEGQRPPSSPAQPPAPPAPVVVPAQETGQGMQL 925
Query: 1024 NM-PVSPESF--YLGRVEASE 1041
+ ++P YL R+ E
Sbjct: 926 SFFDLAPHPVVEYLRRLRIEE 946
Score = 122 (48.0 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 35/117 (29%), Positives = 58/117 (49%)
Query: 357 AIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVL 416
A+ G+ P LA +A +++ + +R+ L A R M L T + LE+L
Sbjct: 291 AVCGLDGRP-LATRAAGALLQYAQVTQRQRVSQLRA-LRVYHTGAYMLLDPQTRRNLELL 348
Query: 417 RNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSE-IAESM 472
+ +L+ +++ T T G+RLLRRW+T PL + R AV+ +AE+M
Sbjct: 349 ESGGRQGAKASLIAVLDRTCTAMGARLLRRWITQPLIVIEPLQVRQHAVARLVAETM 405
Score = 66 (28.3 bits), Expect = 2.4e-58, Sum P(3) = 2.4e-58
Identities = 26/98 (26%), Positives = 50/98 (51%)
Query: 94 QQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI------YA---HL--DHNFM- 141
+Q +LK + D +L+ G + F +DA++ A++L I YA L D +
Sbjct: 11 RQYRKLKEEAADAILLFRFGDFYETFDDDAKLIAELLDITLTRKEYAVDKRLPKDQQKLY 70
Query: 142 --TASIPTFRLNVHVRRLVNAGFKVGVVKQ-TETAAIK 176
A +P ++ +V L+ G++V + +Q +ET A++
Sbjct: 71 APMAGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMR 108
Score = 49 (22.3 bits), Expect = 1.4e-56, Sum P(3) = 1.4e-56
Identities = 19/97 (19%), Positives = 40/97 (41%)
Query: 143 ASIPTFRLNVHVRRLVNAGFKVGVVKQ-TETAAIKAHGPGKAGPFGRGLSALYTKATLXX 201
A +P ++ +V L+ G++V + +Q +ET A++ + + GL+ + + +
Sbjct: 74 AGMPYHAVDRYVSELIARGYRVAIAEQLSETEAMR-NDTRPRSVYAAGLTPVESSGKMVQ 132
Query: 202 XXXXXXXXXXXXX--------XSNYLVCVVDDDGNVG 230
+NYL V+ + G VG
Sbjct: 133 RAIVRVITPGTVIDPAMLPDRTNNYLAAVIVEQGKVG 169
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 991 AKLEAEVSSRVQNRSAKRDL 1010
A+L AE +R++ RSA DL
Sbjct: 398 ARLVAETMARLEVRSALADL 417
>UNIPROTKB|J9P5H1 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 SMART:SM00533 SMART:SM00534
Pfam:PF00855 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AAEX03007503
Ensembl:ENSCAFT00000043509 Uniprot:J9P5H1
Length = 1279
Score = 596 (214.9 bits), Expect = 7.2e-58, Sum P(2) = 7.2e-58
Identities = 188/629 (29%), Positives = 298/629 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F + M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 641 GAVFAK--ANQRMVLDAVTLSNLEIFMNGTNGSTEGTLLEKIDTCHTPFGKRLLKQWLCA 698
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC I+ RLDA+ ++ + + S+ V +K D+ + + + + S L S
Sbjct: 699 PLCSPYAINDRLDAIEDLM--VVPDKISD-VADLLKKLPDLERLLSKIHNV-GSPLKSQN 754
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ I E + SK L +
Sbjct: 755 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVICKIIEIMEEVVDNFKSKILKQVIT 810
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 811 LQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 870
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E L+ R ++G R + + + + +E+P NF +P + ++ STKK RY
Sbjct: 871 EYLEKQ----RSRIGCRTIVYWGIGRNRYQLEIPENFITRNLPEEY-ELKSTKKGCKRYW 925
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + + F Y ++ S
Sbjct: 926 TKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYS 985
Query: 744 RNKN--FVRPVFV--DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------ 792
+ + RPV + ++ P + + RHP + T D+F+PND + E E
Sbjct: 986 QGSDGPMCRPVILLPEEGTPPFLDLRGSRHPCITKTFFGDDFIPNDILIGCEEEEEENGK 1045
Query: 793 -YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
YC ++TGPNMGGKS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G
Sbjct: 1046 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSG 1105
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDEL-GRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
STF EL+E + IL + TA SLV+VDEL GRGT+T DG AIA A + L E+ KC LF
Sbjct: 1106 ESTFFVELSETASILTHATAHSLVLVDELVGRGTATFDGTAIANAVVKELAENIKCRTLF 1165
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
THY + + ++ +V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1166 STHYHSLVEDYSQNV-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGF 1220
Query: 971 KVAQLAQLPPSCISRATVIAAKLEAEVSS 999
A+LA LP I + A + E S
Sbjct: 1221 NAARLANLPEEVIQKGHRKAREFEKMTQS 1249
Score = 81 (33.6 bits), Expect = 7.2e-58, Sum P(2) = 7.2e-58
Identities = 22/83 (26%), Positives = 41/83 (49%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA LG+ + N+ + P
Sbjct: 325 TPGMRKWWQIKSQNFDLIIFYKVGKFYELYHMDALTGVNELGL-VFMKGNWAHSGFPEIA 383
Query: 150 LNVHVRRLVNAGFKVGVVKQTET 172
+ LV G+KV V+QTET
Sbjct: 384 FGRYSDSLVQKGYKVARVEQTET 406
>TIGR_CMR|APH_0857 [details] [associations]
symbol:APH_0857 "DNA mismatch repair protein MutS"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
RefSeq:YP_505434.1 STRING:Q2GJL7 GeneID:3930413 KEGG:aph:APH_0857
PATRIC:20950410 HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
BioCyc:APHA212042:GHPM-871-MONOMER PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 Uniprot:Q2GJL7
Length = 820
Score = 465 (168.7 bits), Expect = 9.5e-58, Sum P(4) = 9.5e-58
Identities = 125/441 (28%), Positives = 224/441 (50%)
Query: 558 KVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVA 617
++ S++ H+ + K L+ ++ ++++ N G +N N + +E+A
Sbjct: 384 RIISRSTHAIISKILVSLGDHRDLLKLISEVMLENNATITKDGGFINPGC--NERLAELA 441
Query: 618 RARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVP-LNWAKVNST 676
R + + + L + R G+ +L+ +S + + + IE+ +++KV ++ + S
Sbjct: 442 RIQN---DSGVLIQRLRDKYRALTGISSLKILSNNLLGYYIEVSSSYKVSDESFVRRQSL 498
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXX 736
+ RY + E+ +++ A E + + +
Sbjct: 499 ANSTRYTTAELKELEERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVL 558
Query: 737 XXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQI 796
+ N+VRP+ VDD + Q I GRHPV++ + +F+ ND +L +E +
Sbjct: 559 TTLAEVAVENNYVRPI-VDDSK--QFKIVRGRHPVVE--VGTDFIANDCDL-SEGNSMSL 612
Query: 797 ITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFL 856
ITGPNM GKS ++RQ ALI ++A +GSFVPA A + V+D I++R+GASD+I G STF+
Sbjct: 613 ITGPNMAGKSTFLRQNALIAVLAHIGSFVPAEHAHIGVIDKIFSRVGASDNIALGHSTFM 672
Query: 857 EELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916
E+ E + IL T++SLVI+DE+GRGT+ +DG++IA A ++++ + K + THY +
Sbjct: 673 VEMVETAAILNQATSKSLVILDEIGRGTAINDGLSIALAAIEHIHDVTKSRAICATHYHE 732
Query: 917 IADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLA 976
+ + + F L + G +V +L++++PG+S S+G VA LA
Sbjct: 733 LPKLSSHFEN----IRFFCLRIEEWKG--------EVVFLHELIPGISSRSYGIHVAGLA 780
Query: 977 QLPPSCISRATVIAAKL-EAE 996
P + RA +K EAE
Sbjct: 781 GFPKGALERAKFFMSKFDEAE 801
Score = 136 (52.9 bits), Expect = 9.5e-58, Sum P(4) = 9.5e-58
Identities = 45/154 (29%), Positives = 72/154 (46%)
Query: 84 THNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-AHLDHNFMT 142
++N +YTP+ +Q LK +Y + LL+ +G + F EDA +A+K L I +
Sbjct: 2 SNNTEYTPVLRQYRALKEQYGECLLLYRLGDFYELFFEDAVIASKTLNIVLTKRGTDTPM 61
Query: 143 ASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXX 202
+P ++ RLV +G+KV V +Q ETA +A R ++ + T TL
Sbjct: 62 CGVPYHSSESYIGRLVKSGYKVAVCEQIETAE-EARKRSVRALVRREVTRIVTPGTLVED 120
Query: 203 XXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGV 236
+NYL C+ N+G+ R GV
Sbjct: 121 SLLDAKE------NNYLACI----SNIGE-RYGV 143
Score = 114 (45.2 bits), Expect = 9.5e-58, Sum P(4) = 9.5e-58
Identities = 29/111 (26%), Positives = 58/111 (52%)
Query: 356 SAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTL-SANTLQQLE 414
+ ++G+ + ++ V A + +++ +R S+ + S L L+ LE
Sbjct: 222 TTVQGLGDFEEVEVSACGSLLEYVRM--TQRGSLPKLSYPKVRDSNSFVLIDGPALRNLE 279
Query: 415 VLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
+ S G + G+L+ ++HT+T GSR+L+R++ P+ N+I+ R DAV
Sbjct: 280 LFSTQS-GEKKGSLISTIDHTVTAMGSRMLKRYLAFPVACHNVINGRQDAV 329
Score = 83 (34.3 bits), Expect = 2.3e-15, Sum P(3) = 2.3e-15
Identities = 45/251 (17%), Positives = 102/251 (40%)
Query: 513 PDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRL 572
PDI+R +TR+ +P + I G+ L ++ E ++ S++ H+ + K L
Sbjct: 350 PDIERILTRVKFSKCSPKD-------IHLLGRALSKIF---EL-SRIISRSTHAIISKIL 398
Query: 573 ILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDS 632
+ ++ ++++ N G +N N + +E+AR + + +
Sbjct: 399 VSLGDHRDLLKLISEVMLENNATITKDGGFINPGC--NERLAELARIQN---DSGVLIQR 453
Query: 633 LINMCRKQLGMRNLEFMSVSGITHLIELPANFKVP-LNWAKVNSTKKTIRYHSPEVLTAL 691
L + R G+ +L+ +S + + + IE+ +++KV ++ + S + RY + E+
Sbjct: 454 LRDKYRALTGISSLKILSNNLLGYYIEVSSSYKVSDESFVRRQSLANSTRYTTAELKELE 513
Query: 692 DQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRP 751
+++ A E + + + + N+VRP
Sbjct: 514 ERIVSAQSESADLEAQIFKGLCSRIADECQDIGLAAEAVAELDVLTTLAEVAVENNYVRP 573
Query: 752 VFVDDHEPVQI 762
+ VDD + +I
Sbjct: 574 I-VDDSKQFKI 583
Score = 41 (19.5 bits), Expect = 9.5e-58, Sum P(4) = 9.5e-58
Identities = 9/30 (30%), Positives = 17/30 (56%)
Query: 493 IVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
I+ + I+S +L SLG D+ + I+ +
Sbjct: 385 IISRSTHAIISKILVSLGDHRDLLKLISEV 414
>UNIPROTKB|E1BYJ2 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00822608
Ensembl:ENSGALT00000039625 ArrayExpress:E1BYJ2 Uniprot:E1BYJ2
Length = 1341
Score = 597 (215.2 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 182/616 (29%), Positives = 299/616 (48%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L TL LEVL+N +NG+ GTLL ++ T +G RLL++W+ PLC+ I+ RL
Sbjct: 714 MVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 773
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
DAV ++ + +E + +H +K D+ + + + I S L S PD R I
Sbjct: 774 DAVEDLLAVPA--KLTE-ITEHLKKLPDLERLLSKIHSI-GSPLKSQNH-PD-SRAI--F 825
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSP--A 580
+ + IA + L K + ++ +D E+V S L + + A P
Sbjct: 826 YEEIKYSKKKIADFLSALEGFKVMNEI-VDA--MEEVASDFKSQVLKQLVTRKAKHPDGR 882
Query: 581 VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
+A+L +Q ++ G + +A + +++ +E+ + ++ RK
Sbjct: 883 FPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTVEEDFRTYLDKQRKL 942
Query: 641 LGMRNLEFMSVSGITHLIELP---ANFKVPLNWAKVNSTKKTI-RYHSPEVLTALDQLAL 696
LG++++ + + +E+P + +P + ++ ST+K RY + E+ L +L
Sbjct: 943 LGLKSVLYWGTGKNRYQMEIPETATSRNLPEEY-ELKSTRKGYKRYWTKEIEKMLAELIN 1001
Query: 697 ANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVFV 754
A E + F ++ S++ + RPV +
Sbjct: 1002 AEERRDAALKDCMRRLFYNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVIL 1061
Query: 755 --DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------YCQIITGPNMGGK 805
D P + + + RHP + T D+F+PND + ++ E C ++TGPNMGGK
Sbjct: 1062 LPVDSAPPFLELKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGK 1121
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S +RQ L+ IMAQ+G +VPA L +D ++TR+GASD I G STF EL+E S I
Sbjct: 1122 STLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSI 1181
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
L++ T SLV+VDELGRGT+T DG AIA A + L E+ KC LF THY + + ++
Sbjct: 1182 LQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVE---DYS 1238
Query: 926 GSVGTY--HVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
GS H++ + ++ P S + +T+LYK + G S+GF A+LA +P I
Sbjct: 1239 GSAAVRLGHMACMVENESEDP----SQETITFLYKFIEGACPKSYGFNAARLADIPEEII 1294
Query: 984 SRATVIAAKLEAEVSS 999
+ A + E + S
Sbjct: 1295 QKGHRKAKEFEKKTMS 1310
Score = 78 (32.5 bits), Expect = 1.4e-57, Sum P(2) = 1.4e-57
Identities = 45/184 (24%), Positives = 75/184 (40%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K TP ++ +LK++ D ++ +VG + + DA LG+ + ++ + P
Sbjct: 388 KCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLI-FMKGSWAHSGFPE 446
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTET-----AAIKA--HGPGKAGPFGRGLSALYTKATLX 200
LV G+K+ V+QTET A KA H R + + TK T
Sbjct: 447 TAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHTTKFDKVVRREICRIITKGT-- 504
Query: 201 XXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYG 260
+ YL+CV + + + G+ R V+G V V+ S G G
Sbjct: 505 -QTYSIIDCDPTENHNKYLLCVKEKEDSSGQ-R--VYG--------VCFVDTSVGKFYVG 552
Query: 261 EFND 264
+F+D
Sbjct: 553 QFSD 556
>UNIPROTKB|E1BWV7 [details] [associations]
symbol:MSH6 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0000400 "four-way
junction DNA binding" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IEA] [GO:0003682 "chromatin binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IEA] [GO:0009411 "response to UV" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0032142 "single guanine insertion binding" evidence=IEA]
[GO:0032143 "single thymine insertion binding" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0032357 "oxidized
purine DNA binding" evidence=IEA] [GO:0032405 "MutLalpha complex
binding" evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA]
[GO:0045190 "isotype switching" evidence=IEA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA] [GO:0051096
"positive regulation of helicase activity" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF00855
GO:GO:0005524 GO:GO:0009411 GO:GO:0008630 GO:GO:0000287
GO:GO:0043531 GO:GO:0003682 GO:GO:0016887 GO:GO:0006298
GO:GO:0000790 InterPro:IPR000313 PROSITE:PS50812 GO:GO:0045910
SMART:SM00293 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0032301 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032357 GO:GO:0032142 GO:GO:0032143
GO:GO:0051096 OMA:YHMDAVI InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 EMBL:AADN02036252 IPI:IPI00571940
Ensembl:ENSGALT00000014567 ArrayExpress:E1BWV7 Uniprot:E1BWV7
Length = 1357
Score = 597 (215.2 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 182/616 (29%), Positives = 299/616 (48%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L TL LEVL+N +NG+ GTLL ++ T +G RLL++W+ PLC+ I+ RL
Sbjct: 730 MVLDGVTLMNLEVLQNGTNGTTEGTLLERIDSCCTPFGKRLLKQWLCAPLCNPTSINDRL 789
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
DAV ++ + +E + +H +K D+ + + + I S L S PD R I
Sbjct: 790 DAVEDLLAVPA--KLTE-ITEHLKKLPDLERLLSKIHSI-GSPLKSQNH-PD-SRAI--F 841
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSP--A 580
+ + IA + L K + ++ +D E+V S L + + A P
Sbjct: 842 YEEIKYSKKKIADFLSALEGFKVMNEI-VDA--MEEVASDFKSQVLKQLVTRKAKHPDGR 898
Query: 581 VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
+A+L +Q ++ G + +A + +++ +E+ + ++ RK
Sbjct: 899 FPDLSAELKRWDTAFDHNQARKTGVITPKAGFDPDYDKALQDIKTVEEDFRTYLDKQRKL 958
Query: 641 LGMRNLEFMSVSGITHLIELP---ANFKVPLNWAKVNSTKKTI-RYHSPEVLTALDQLAL 696
LG++++ + + +E+P + +P + ++ ST+K RY + E+ L +L
Sbjct: 959 LGLKSVLYWGTGKNRYQMEIPETATSRNLPEEY-ELKSTRKGYKRYWTKEIEKMLAELIN 1017
Query: 697 ANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVFV 754
A E + F ++ S++ + RPV +
Sbjct: 1018 AEERRDAALKDCMRRLFYNFDKNSQDWQTAVQCIAVLDVLMSLANYSQDGDGPLCRPVIL 1077
Query: 755 --DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------YCQIITGPNMGGK 805
D P + + + RHP + T D+F+PND + ++ E C ++TGPNMGGK
Sbjct: 1078 LPVDSAPPFLELKNARHPCITKTFFGDDFIPNDIVIGSKDEDGGSEASCVLVTGPNMGGK 1137
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S +RQ L+ IMAQ+G +VPA L +D ++TR+GASD I G STF EL+E S I
Sbjct: 1138 STLMRQAGLLVIMAQLGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVELSETSSI 1197
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
L++ T SLV+VDELGRGT+T DG AIA A + L E+ KC LF THY + + ++
Sbjct: 1198 LQHATEHSLVLVDELGRGTATFDGTAIASAVVRELAENIKCRTLFSTHYHSLVE---DYS 1254
Query: 926 GSVGTY--HVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
GS H++ + ++ P S + +T+LYK + G S+GF A+LA +P I
Sbjct: 1255 GSAAVRLGHMACMVENESEDP----SQETITFLYKFIEGACPKSYGFNAARLADIPEEII 1310
Query: 984 SRATVIAAKLEAEVSS 999
+ A + E + S
Sbjct: 1311 QKGHRKAKEFEKKTMS 1326
Score = 78 (32.5 bits), Expect = 1.5e-57, Sum P(2) = 1.5e-57
Identities = 45/184 (24%), Positives = 75/184 (40%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K TP ++ +LK++ D ++ +VG + + DA LG+ + ++ + P
Sbjct: 404 KCTPGMRRWWQLKSQNFDAVICYKVGKFYELYHMDAVTGVNELGLI-FMKGSWAHSGFPE 462
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTET-----AAIKA--HGPGKAGPFGRGLSALYTKATLX 200
LV G+K+ V+QTET A KA H R + + TK T
Sbjct: 463 TAFGRFSAILVQKGYKIARVEQTETPEMMEARCKATAHTTKFDKVVRREICRIITKGT-- 520
Query: 201 XXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYG 260
+ YL+CV + + + G+ R V+G V V+ S G G
Sbjct: 521 -QTYSIIDCDPTENHNKYLLCVKEKEDSSGQ-R--VYG--------VCFVDTSVGKFYVG 568
Query: 261 EFND 264
+F+D
Sbjct: 569 QFSD 572
>UNIPROTKB|P23909 [details] [associations]
symbol:mutS species:83333 "Escherichia coli K-12"
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0030983
"mismatched DNA binding" evidence=IDA] [GO:0016887 "ATPase
activity" evidence=IDA] [GO:0032300 "mismatch repair complex"
evidence=IGI] [GO:0032136 "adenine/cytosine mispair binding"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEP] [GO:0043531 "ADP binding" evidence=IDA] [GO:0008301
"DNA binding, bending" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0000018 "regulation of DNA recombination"
evidence=IMP] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000166
"nucleotide binding" evidence=IEA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003684
GO:GO:0043531 GO:GO:0008301 GO:GO:0006298 EMBL:U29579 GO:GO:0000018
GO:GO:0008094 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
PDB:2OK2 PDBsum:2OK2 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 GO:GO:0032300 HOGENOM:HOG000221407 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
OMA:ITQTVRD EMBL:M64730 EMBL:AF004287 EMBL:AF001987 EMBL:AF001988
EMBL:AF001989 EMBL:AF001990 EMBL:AF001991 EMBL:AF001992
EMBL:AF001993 EMBL:AF001994 EMBL:AF001995 EMBL:AF001996
EMBL:AF001997 EMBL:AF001998 EMBL:AF001999 EMBL:AF002000
EMBL:AF002001 EMBL:AF002002 EMBL:AF002003 EMBL:AF002004
EMBL:AF002005 EMBL:AF002006 EMBL:AF002007 EMBL:AF002008
EMBL:AF002009 EMBL:AF002010 PIR:I54964 RefSeq:NP_417213.1
RefSeq:YP_490942.1 PDB:1E3M PDB:1NG9 PDB:1OH5 PDB:1OH6 PDB:1OH7
PDB:1OH8 PDB:1W7A PDB:1WB9 PDB:1WBB PDB:1WBD PDB:2WTU PDB:3K0S
PDBsum:1E3M PDBsum:1NG9 PDBsum:1OH5 PDBsum:1OH6 PDBsum:1OH7
PDBsum:1OH8 PDBsum:1W7A PDBsum:1WB9 PDBsum:1WBB PDBsum:1WBD
PDBsum:2WTU PDBsum:3K0S ProteinModelPortal:P23909 SMR:P23909
DIP:DIP-10287N IntAct:P23909 MINT:MINT-1264156 SWISS-2DPAGE:P23909
PRIDE:P23909 EnsemblBacteria:EBESCT00000004425
EnsemblBacteria:EBESCT00000016508 GeneID:12932427 GeneID:947206
KEGG:ecj:Y75_p2671 KEGG:eco:b2733 PATRIC:32120868 EchoBASE:EB0620
EcoGene:EG10625 BioCyc:EcoCyc:EG10625-MONOMER
BioCyc:ECOL316407:JW2703-MONOMER BioCyc:MetaCyc:EG10625-MONOMER
EvolutionaryTrace:P23909 Genevestigator:P23909 GO:GO:0032136
Uniprot:P23909
Length = 853
Score = 505 (182.8 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 142/459 (30%), Positives = 227/459 (49%)
Query: 582 IGKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRK 639
+G+ A+L + + D +L + +I++G E+ R A + L+ L R+
Sbjct: 397 MGEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERE 456
Query: 640 QLGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALA 697
+ G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 457 RTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTS 516
Query: 698 NEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDH 757
+ + + ++ + + N+ P F+D
Sbjct: 517 KGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID-- 574
Query: 758 EPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI 817
+P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +
Sbjct: 575 KP-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIAL 632
Query: 818 MAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIV 877
MA +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV++
Sbjct: 633 MAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLM 692
Query: 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT 937
DE+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 693 DEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL- 750
Query: 938 SHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEV 997
H G D+ + +++ V G + S+G VA LA +P I RA +LE+ +
Sbjct: 751 EH---G--DT-----IAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES-I 799
Query: 998 SSRVQNRSAKRDLLVKLSDQEQ-----EAQENMPVSPES 1031
S + LS E+ EA EN+ P+S
Sbjct: 800 SPNAAATQVDGTQMSLLSVPEETSPAVEALENL--DPDS 836
Score = 108 (43.1 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGP 180
IP + ++ +LVN G V + +Q A + GP
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT-SKGP 105
Score = 98 (39.6 bits), Expect = 1.7e-57, Sum P(3) = 1.7e-57
Identities = 20/66 (30%), Positives = 39/66 (59%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 269 MDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQT 327
Query: 465 VSEIAE 470
+ + +
Sbjct: 328 IGALQD 333
Score = 78 (32.5 bits), Expect = 3.3e-10, Sum P(3) = 3.3e-10
Identities = 48/188 (25%), Positives = 85/188 (45%)
Query: 502 LSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS 561
L VL +G D++R + R+ RTA P + +A M+ +A +QL +L E V S
Sbjct: 338 LQPVLRQVG---DLERILARLALRTARPRD-LARMR---HAFQQLPELRAQ---LETVDS 387
Query: 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARK 621
+ AL +++ A ++ +A ++ T D G +I++G E+ R
Sbjct: 388 APVQ-ALREKMGEFAELRDLLERA--IIDTPPVLVRDGG------VIASGYNEELDEWRA 438
Query: 622 AVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKT 679
A + L+ L R++ G+ L+ F +V G I + P+N+ + + K
Sbjct: 439 LADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNA 498
Query: 680 IRYHSPEV 687
RY PE+
Sbjct: 499 ERYIIPEL 506
>UNIPROTKB|P61667 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000014 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00091 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 484 (175.4 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 128/393 (32%), Positives = 205/393 (52%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK 665
II+ G SE+ R + K + L + + G+ +L+ + IE+ +N
Sbjct: 429 IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVFGYYIEVTKSNLS 488
Query: 666 -VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
+P ++ + + R+ +PE+ +++ A + + + A + +
Sbjct: 489 AIPDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQGERIA 548
Query: 725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTI-LLDNFVPN 783
+ + +VRP VD+ + + + GRHPV++ + + FV N
Sbjct: 549 RTADRLATLDVLAALADVAHDHRYVRPT-VDEGDAIVV--TGGRHPVVEALNRSERFVAN 605
Query: 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843
D L IITGPNM GKS ++RQVALI +MAQ GSFVPA A + V+D I+TR+G
Sbjct: 606 DVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVG 665
Query: 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903
ASD++ +G+STF+ E+ E + ILRN T +SLV++DE+GRGTST DGV+IA+A +YL +
Sbjct: 666 ASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDT 725
Query: 904 KKCMV--LFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVP 961
++C LF THY ++ ++ V +V+ + +DQ V +L K+V
Sbjct: 726 ERCAAKTLFATHYHELTELAVT-RNRVKNCNVA----------VKEWNDQ-VIFLRKIVE 773
Query: 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
G + S+G +VA+LA LP I RA I LE
Sbjct: 774 GGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 118 (46.6 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
D ++A+A + +L+Q + + S+ + E + L ++ + LE+ +G
Sbjct: 232 DCGLRAVAAVLHYLQQTQKGDVRHI--SYLQAYRTQEFLVLDESSRRNLELNATIGDGKR 289
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
G+LL +++ T+T G R L++W+ +PL I+ RLDAV E+
Sbjct: 290 RGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEEL 333
Score = 101 (40.6 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-YAHLDHNFMTASIPTF 148
TP+ +Q +E+K +PD +L +G + F +DA A+++L I + A IP
Sbjct: 5 TPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLC 64
Query: 149 RLNVH-----VRRLVNAGFKVGVVKQTE 171
+ H + +LV AG KV + +Q E
Sbjct: 65 GVPFHSAAPYIAKLVEAGEKVAICEQVE 92
Score = 45 (20.9 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 290 SKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVM 327
++ E+M+ + G AS C S DC G A+A V+
Sbjct: 207 AEYAERMVRNHFGVASAEAAGCGSMDC--GLRAVAAVL 242
Score = 37 (18.1 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 244 RLGVVAVEISTGD 256
R GV +++STGD
Sbjct: 137 RWGVAYLDLSTGD 149
>TIGR_CMR|GSU_1822 [details] [associations]
symbol:GSU_1822 "DNA mismatch repair protein MutS"
species:243231 "Geobacter sulfurreducens PCA" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000014 InterPro:IPR000432
InterPro:IPR005748 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00091 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 GO:GO:0004871
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_952872.1
ProteinModelPortal:P61667 GeneID:2688694 KEGG:gsu:GSU1822
PATRIC:22026501 BioCyc:GSUL243231:GH27-1750-MONOMER Uniprot:P61667
Length = 871
Score = 484 (175.4 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 128/393 (32%), Positives = 205/393 (52%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK 665
II+ G SE+ R + K + L + + G+ +L+ + IE+ +N
Sbjct: 429 IIAQGYHSELDELRSISREGKGFIARLEAQEKARTGISSLKVRYNKVFGYYIEVTKSNLS 488
Query: 666 -VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
+P ++ + + R+ +PE+ +++ A + + + A + +
Sbjct: 489 AIPDDYIRRQTLANAERFITPELKEYEEKVLGAEDRIVELEYALFQDIRQRVAAQGERIA 548
Query: 725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTI-LLDNFVPN 783
+ + +VRP VD+ + + + GRHPV++ + + FV N
Sbjct: 549 RTADRLATLDVLAALADVAHDHRYVRPT-VDEGDAIVV--TGGRHPVVEALNRSERFVAN 605
Query: 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843
D L IITGPNM GKS ++RQVALI +MAQ GSFVPA A + V+D I+TR+G
Sbjct: 606 DVQLDNGENQLVIITGPNMAGKSTFMRQVALIVLMAQTGSFVPADEASIGVVDRIFTRVG 665
Query: 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903
ASD++ +G+STF+ E+ E + ILRN T +SLV++DE+GRGTST DGV+IA+A +YL +
Sbjct: 666 ASDNLARGQSTFMVEMMETAAILRNATPRSLVVLDEIGRGTSTFDGVSIAWAVAEYLHDT 725
Query: 904 KKCMV--LFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVP 961
++C LF THY ++ ++ V +V+ + +DQ V +L K+V
Sbjct: 726 ERCAAKTLFATHYHELTELAVT-RNRVKNCNVA----------VKEWNDQ-VIFLRKIVE 773
Query: 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
G + S+G +VA+LA LP I RA I LE
Sbjct: 774 GGASHSYGIQVARLAGLPQEVIERAKEILHNLE 806
Score = 118 (46.6 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 29/104 (27%), Positives = 56/104 (53%)
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
D ++A+A + +L+Q + + S+ + E + L ++ + LE+ +G
Sbjct: 232 DCGLRAVAAVLHYLQQTQKGDVRHI--SYLQAYRTQEFLVLDESSRRNLELNATIGDGKR 289
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
G+LL +++ T+T G R L++W+ +PL I+ RLDAV E+
Sbjct: 290 RGSLLGLLDRTVTAMGGRKLKQWINYPLVSIEKINERLDAVEEL 333
Score = 101 (40.6 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-YAHLDHNFMTASIPTF 148
TP+ +Q +E+K +PD +L +G + F +DA A+++L I + A IP
Sbjct: 5 TPMMRQYLEIKADHPDAILFFRLGDFYEMFLDDAVKASRILDITLTSRNKGGDGADIPLC 64
Query: 149 RLNVH-----VRRLVNAGFKVGVVKQTE 171
+ H + +LV AG KV + +Q E
Sbjct: 65 GVPFHSAAPYIAKLVEAGEKVAICEQVE 92
Score = 45 (20.9 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 290 SKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVM 327
++ E+M+ + G AS C S DC G A+A V+
Sbjct: 207 AEYAERMVRNHFGVASAEAAGCGSMDC--GLRAVAAVL 242
Score = 37 (18.1 bits), Expect = 7.4e-57, Sum P(5) = 7.4e-57
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 244 RLGVVAVEISTGD 256
R GV +++STGD
Sbjct: 137 RWGVAYLDLSTGD 149
>UNIPROTKB|Q3KKQ0 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:315277 "Chlamydia trachomatis A/HAR-13" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:CP000051 GenomeReviews:CP000051_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_328620.1
ProteinModelPortal:Q3KKQ0 STRING:Q3KKQ0 GeneID:3687872
KEGG:cta:CTA_0862 PATRIC:32023672
BioCyc:CTRA315277:GI4C-873-MONOMER Uniprot:Q3KKQ0
Length = 820
Score = 510 (184.6 bits), Expect = 7.9e-57, Sum P(3) = 7.9e-57
Identities = 129/397 (32%), Positives = 210/397 (52%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF-- 664
I +N ++ R R +++K + R + G++ L+ + + IE+ +N
Sbjct: 426 IFANHYHPDLLRLRNIKENSKSWILEYQERIRNETGIKKLKVCYAQALGYYIEVASNLAP 485
Query: 665 KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE-- 722
++P + + S R+ + E+ D++ ++L + KE Y E
Sbjct: 486 QLPKEFIRRQSRLHAERFTTQELQQFQDEVFSVEDKL----QTLETKLFKELCFYIVEHR 541
Query: 723 --FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL-LDN 779
+ ++ RP+ DH + I G HPV T+L
Sbjct: 542 DLILKLSTAVADLDYVVSLAELAAEYDYRRPLV--DHSDA-LSITKGMHPVALTLLDKGT 598
Query: 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIY 839
F+PNDT +H+ + ++TGPNM GKS YIRQ+AL+ IMAQ+GSF+PA SA + ++D I+
Sbjct: 599 FIPNDTVMHSAQTRMILLTGPNMAGKSTYIRQIALLVIMAQMGSFIPARSAHIGIVDKIF 658
Query: 840 TRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899
TR+GA D++ +G STF+ E+ E + IL N T +SLVI+DE+GRGTST+DG+AIA A +++
Sbjct: 659 TRIGAGDNLSKGMSTFMVEMAETANILHNATDRSLVILDEIGRGTSTYDGLAIAQAVVEF 718
Query: 900 LL--EHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLY 957
LL + KK LF THY ++ +++ H ++ + M + S Q + ++Y
Sbjct: 719 LLFTDGKKAKTLFATHYKELTELEM---------HCQHVENFHAM--VKENSGQPI-FMY 766
Query: 958 KVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
++V G S+ SFG VA+LA P S +SRA I + E
Sbjct: 767 EIVKGHSKKSFGIHVAKLAGFPLSVVSRAQQILHQFE 803
Score = 445 (161.7 bits), Expect = 4.8e-49, Sum P(3) = 4.8e-49
Identities = 124/416 (29%), Positives = 211/416 (50%)
Query: 514 DIQRGITRIFHRTATPSEFIAVMQAIL---YAGKQLQQLHIDGEYREKVTSKTLHSALLK 570
D++R T+I ATP + + ++L + LQ + E+ E +K L + L
Sbjct: 348 DLERLATKISTSLATPKDIGTLRDSLLSCTHIADNLQNCALP-EFLE---NKFLIAPPLC 403
Query: 571 RLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEEL 630
LI T S+ + K+ +G+ I +N ++ R R +++K +
Sbjct: 404 SLIKTLSTELIQELPLKV---------SEGN-----IFANHYHPDLLRLRNIKENSKSWI 449
Query: 631 DSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--KVPLNWAKVNSTKKTIRYHSPEVL 688
R + G++ L+ + + IE+ +N ++P + + S R+ + E+
Sbjct: 450 LEYQERIRNETGIKKLKVCYAQALGYYIEVASNLAPQLPKEFIRRQSRLHAERFTTQELQ 509
Query: 689 TALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNF 748
D++ ++L + + + + ++
Sbjct: 510 QFQDEVFSVEDKLQTLETKLFKELCFYIVEHRDLILKLSTAVADLDYVVSLAELAAEYDY 569
Query: 749 VRPVFVDDHEPVQIHICSGRHPVLDTIL-LDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
RP+ DH + I G HPV T+L F+PNDT +H+ + ++TGPNM GKS
Sbjct: 570 RRPLV--DHSDA-LSITKGMHPVALTLLDKGTFIPNDTVMHSAQTRMILLTGPNMAGKST 626
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQ+AL+ IMAQ+GSF+PA SA + ++D I+TR+GA D++ +G STF+ E+ E + IL
Sbjct: 627 YIRQIALLVIMAQMGSFIPARSAHIGIVDKIFTRIGAGDNLSKGMSTFMVEMAETANILH 686
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL--EHKKCMVLFVTHYPKIADIK 921
N T +SLVI+DE+GRGTST+DG+AIA A +++LL + KK LF THY ++ +++
Sbjct: 687 NATDRSLVILDEIGRGTSTYDGLAIAQAVVEFLLFTDGKKAKTLFATHYKELTELE 742
Score = 115 (45.5 bits), Expect = 7.9e-57, Sum P(3) = 7.9e-57
Identities = 37/116 (31%), Positives = 55/116 (47%)
Query: 84 THNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTA 143
TH K TP+ QQ + K + D LL+ +G + F +DA + A+ L I N +
Sbjct: 2 TH--KLTPMMQQWHQCKEQAGDCLLLFRLGEFYEAFFDDALILAQNLDITLTQRQNVPMS 59
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP L+ +V RLV+ GFKV + +Q + G G R ++ L T L
Sbjct: 60 GIPATCLDGYVDRLVSRGFKVAIAEQADNTE------GSKGLVPRTINRLITPGAL 109
Score = 76 (31.8 bits), Expect = 7.9e-57, Sum P(3) = 7.9e-57
Identities = 20/53 (37%), Positives = 27/53 (50%)
Query: 413 LEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
LE+L G+LL +M T T G RLLR + +P D I+ R D+V
Sbjct: 274 LELLSPIHGEHRKGSLLQVMERTSTPMGGRLLRNTLINPFYDLKEITLRQDSV 326
>SGD|S000002504 [details] [associations]
symbol:MSH6 "Protein required for mismatch repair in mitosis
and meiosis, forms a" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IPI] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IEA;IDA;IMP] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000710 "meiotic
mismatch repair" evidence=IMP] [GO:0032137 "guanine/thymine mispair
binding" evidence=IDA] [GO:0032138 "single base insertion or
deletion binding" evidence=IMP;IDA] [GO:0000400 "four-way junction
DNA binding" evidence=IDA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002504
GO:GO:0005524 KO:K06630 GO:GO:0009411 GO:GO:0003684 EMBL:BK006938
GO:GO:0030983 EMBL:Z47746 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 RefSeq:NP_010384.3 GeneID:851676 KEGG:sce:YDR099W
GO:GO:0008094 GO:GO:0036297 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0000710 GO:GO:0032301
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
OMA:YHMDAVI InterPro:IPR017261 PIRSF:PIRSF037677
GeneTree:ENSGT00550000075024 HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5
PIR:S51246 RefSeq:NP_010382.3 ProteinModelPortal:Q03834 SMR:Q03834
DIP:DIP-2423N IntAct:Q03834 MINT:MINT-618151 STRING:Q03834
PaxDb:Q03834 PeptideAtlas:Q03834 EnsemblFungi:YDR097C GeneID:851671
KEGG:sce:YDR097C CYGD:YDR097c NextBio:969292 Genevestigator:Q03834
GermOnline:YDR097C Uniprot:Q03834
Length = 1242
Score = 451 (163.8 bits), Expect = 8.8e-57, Sum P(3) = 8.8e-57
Identities = 149/513 (29%), Positives = 235/513 (45%)
Query: 508 SLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSA 567
+ + PD++R + RI RT +F V+ A + I E ++ + + L
Sbjct: 692 TFSKLPDLERMLARIHSRTIKVKDFEKVITAF--------ETII--ELQDSLKNNDLKGD 741
Query: 568 LLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAK 627
+ K + +S P + +A K S N + N+++ G E ++ +Q +
Sbjct: 742 VSKYI---SSFPEGLVEAVK--SWTNAFERQKAINENIIVPQRGFDIEFDKSMDRIQELE 796
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELP--ANFKVPLNWAKVNSTKKTIRYHSP 685
+EL ++ RKQ N+++ + IE+P A VP NW ++ + K RY+S
Sbjct: 797 DELMEILMTYRKQFKCSNIQYKDSGKEIYTIEIPISATKNVPSNWVQMAANKTYKRYYSD 856
Query: 686 EVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRN 745
EV +A A E + + ++F +Y +R
Sbjct: 857 EVRALARSMAEAKEIHKTLEEDLKNRLCQKFDAHYNTIWMPTIQAISNIDCLLAI--TRT 914
Query: 746 KNFV-----RPVFVDDHEP---VQIH----ICSGRHPV--LDTILLDNFVPNDTNLHAER 791
++ RP VD+ + Q++ S RHP L +F+PND L E+
Sbjct: 915 SEYLGAPSCRPTIVDEVDSKTNTQLNGFLKFKSLRHPCFNLGATTAKDFIPNDIELGKEQ 974
Query: 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
++TG N GKS +R + IMAQ+G +VP SA L +D I TR+GA+D+I QG
Sbjct: 975 PRLGLLTGANAAGKSTILRMACIAVIMAQMGCYVPCESAVLTPIDRIMTRLGANDNIMQG 1034
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
+STF EL E IL T +SL++VDELGRG S+ DG AIA + L ++ H + + F
Sbjct: 1035 KSTFFVELAETKKILDMATNRSLLVVDELGRGGSSSDGFAIAESVLHHVATHIQSLGFFA 1094
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFK 971
THY +A K V +S L ++ ++VT+LYK++ G SE SFG
Sbjct: 1095 THYGTLAS-SFKHHPQVRPLKMSILVD---------EATRNVTFLYKMLEGQSEGSFGMH 1144
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSSRVQNR 1004
VA + + I A + A LE S V+ R
Sbjct: 1145 VASMCGISKEIIDNAQIAADNLE-HTSRLVKER 1176
Score = 151 (58.2 bits), Expect = 8.8e-57, Sum P(3) = 8.8e-57
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L TLQ LE+ N+ +GS+ GTL + N +T G R++++W+ HPL +N I +RL
Sbjct: 614 MVLDGITLQNLEIFSNSFDGSDKGTLFKLFNRAITPMGKRMMKKWLMHPLLRKNDIESRL 673
Query: 463 DAVSEIAESM 472
D+V + + +
Sbjct: 674 DSVDSLLQDI 683
Score = 121 (47.7 bits), Expect = 8.8e-57, Sum P(3) = 8.8e-57
Identities = 42/183 (22%), Positives = 75/183 (40%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKV--LGIYAHLDHNFMTASI 145
K+TP E+Q E+K+K D ++ + G F + +DA +A + L I N A I
Sbjct: 310 KFTPFEKQYWEIKSKMWDCIVFFKKGKFFELYEKDALLANALFDLKIAGGGRANMQLAGI 369
Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXXX 205
P + + G+KV V Q E+ K G G R L + T TL
Sbjct: 370 PEMSFEYWAAQFIQMGYKVAKVDQRESMLAKEMREGSKGIVKRELQCILTSGTLTDGDML 429
Query: 206 XXXXXXXXXXSNYLVCVVDDDGNV---GKIRNGVFGDGFDVRL-GVVAVEISTGDVVYGE 261
+ + + + ++ GN ++ + + ++ G ++ +TG++ E
Sbjct: 430 HSDL------ATFCLAIREEPGNFYNETQLDSSTIVQKLNTKIFGAAFIDTATGELQMLE 483
Query: 262 FND 264
F D
Sbjct: 484 FED 486
Score = 37 (18.1 bits), Expect = 2.4e-12, Sum P(3) = 2.4e-12
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1056 FATHDDNPAKSFQFLKHARSIAKELII 1082
FATH A SF+ R + +++
Sbjct: 1093 FATHYGTLASSFKHHPQVRPLKMSILV 1119
>UNIPROTKB|I3LHZ9 [details] [associations]
symbol:LOC100739477 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 InterPro:IPR000313 PROSITE:PS50812 SMART:SM00293
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 EMBL:FP476043
Ensembl:ENSSSCT00000028757 Uniprot:I3LHZ9
Length = 1334
Score = 612 (220.5 bits), Expect = 2.6e-56, P = 2.6e-56
Identities = 192/628 (30%), Positives = 299/628 (47%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F + M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 698 GAVFAK--ANQRMVLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCA 755
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC+ IS RLDA+ ++ + + SE V +K D+ + + + + S L S
Sbjct: 756 PLCNPYAISDRLDAIEDLM--VVPDKISEVVDLL-KKLPDLERLLSKIHNV-GSPLKSQN 811
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLH-IDGEYREKVTSKTLHSAL- 568
PD R I ++ T + I + L K + ++ I E + SK L L
Sbjct: 812 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVICKIRGIMEEVIDDFKSKILKQVLT 867
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE-VARARKAVQSAK 627
L+ P + + + + + E A + L+ + + + +A R+ QS
Sbjct: 868 LQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLL 927
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RYH 683
E L+ R ++G R + + + + +E+P NF +P + ++ STKK RY
Sbjct: 928 EYLEKQ----RSRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYW 982
Query: 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXS 743
+ + L L A E + + F Y ++ S
Sbjct: 983 TKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYS 1042
Query: 744 RNKN--FVRPVFV--DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE------ 792
R + RPV + + P +++ RHP + T D+F+PND + E E
Sbjct: 1043 RGGDGPMCRPVILLPGEDTPPFLYLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEENDK 1102
Query: 793 -YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
YC ++TGPNMGGKS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G
Sbjct: 1103 AYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSG 1162
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
STF EL+E + IL + TA SLV+VDELGRGT+T DG AIA A + L E+ KC LF
Sbjct: 1163 ESTFFVELSETASILTHATAHSLVLVDELGRGTATFDGTAIANAVVKELAENIKCRTLFS 1222
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFK 971
THY + + ++ +V H++ + ++ P S + +T+LYK + G S+GF
Sbjct: 1223 THYHSLVEDYSQNV-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFN 1277
Query: 972 VAQLAQLPPSCISRATVIAAKLEAEVSS 999
A+LA LP I + A + E S
Sbjct: 1278 AARLANLPEEVIQKGHRKAREFEKMTQS 1305
Score = 256 (95.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 174/749 (23%), Positives = 303/749 (40%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 382 TPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 440
Query: 150 LNVHVRRLVNAGFKVGVVKQTETAAIK-------AHGPGKAGPFGRGLSALYTKATLXXX 202
+ LV G+KV V+QTET + AH R + + TK T
Sbjct: 441 FGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGT---Q 497
Query: 203 XXXXXXXXXXXXXSNYLVCVVD-DDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGE 261
S YL+ + + +D + G R V+G V V+ S G G+
Sbjct: 498 TYSVLEGDPSENYSKYLLSLKEKEDDSSGHTR--VYG--------VCFVDTSLGKFFIGQ 547
Query: 262 FNDG--FLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIG 319
F+D R G LS +T KM+L +S+++ F
Sbjct: 548 FSDDRHCSRFRTLVAHYPPVQVLFEKGS-LSTET-KMILK-GSLSSSLQEGLIPGSQFWD 604
Query: 320 GGALAEVMSLYENMGEDTLSNNEDQNMDVPE--QG-NHRSAIEGIM--NMPDLAVQALAL 374
G + L E D L NED + +P+ +G S G+ +LA+ AL
Sbjct: 605 AGKTLRTL-LEEGYFTDKL--NEDSGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGG 661
Query: 375 TIRHLKQFGLERIMCLGASFRS--------LSGS----------MEMTLSANTLQQLEVL 416
+ +LK+ +++ + A+F +S S M L A TL LE+
Sbjct: 662 CVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAKANQRMVLDAVTLNNLEIF 721
Query: 417 RNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYR 476
N +NGS GTLL ++ T +G RLL++W+ PLC+ IS RLDA+ ++ + +
Sbjct: 722 LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLM--VVPDK 779
Query: 477 TSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVM 536
SE V +K D+ + + + + S L S PD R I ++ T + I
Sbjct: 780 ISEVVDLL-KKLPDLERLLSKIHNV-GSPLKSQNH-PD-SRAI--MYEETTYSKKKIIDF 833
Query: 537 QAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNK-E 595
+ L K + ++ G E + S +LK+ +LT + G+ L +N+ +
Sbjct: 834 LSALEGFKVICKIR--GIMEEVIDD--FKSKILKQ-VLTLQTKNPEGRFPDLTVELNRWD 888
Query: 596 AA---DQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVS 652
A ++ L+ G S+ +A ++ ++ L + R ++G R + + +
Sbjct: 889 TAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIG 948
Query: 653 GITHLIELPANF---KVPLNWAKVNSTKKTI-RYHSPEVLTALDQLALANEELTIVCRAA 708
+ +E+P NF +P + ++ STKK RY + + L L A E + +
Sbjct: 949 RNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDC 1007
Query: 709 WDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVFV--DDHEPVQIHI 764
F Y ++ SR + RPV + + P +++
Sbjct: 1008 MRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFLYL 1067
Query: 765 CSGRHP-VLDTILLDNFVPNDTNLHAERE 792
RHP + T D+F+PND + E E
Sbjct: 1068 KGSRHPCITKTFFGDDFIPNDILIGCEEE 1096
>UNIPROTKB|A6V1G8 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:381754 "Pseudomonas aeruginosa PA7" [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
EMBL:CP000744 GenomeReviews:CP000744_GR GO:GO:0030983 GO:GO:0008094
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
OMA:HYFELTV HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_001346903.1
ProteinModelPortal:A6V1G8 SMR:A6V1G8 STRING:A6V1G8 GeneID:5355863
KEGG:pap:PSPA7_1519 PATRIC:19824849
BioCyc:PAER381754:GHMY-1583-MONOMER Uniprot:A6V1G8
Length = 855
Score = 504 (182.5 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 132/393 (33%), Positives = 213/393 (54%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPA-- 662
+I G +E+ + ++A + L L + + G+ NL+ + + G + IELP
Sbjct: 423 VIKTGYDAELDELQALSENAGQFLMDLEAREKARTGLPNLKVGYNRIHG--YFIELPRVQ 480
Query: 663 NFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVC-RAAWDSFLKEFGGYYA 721
+ P ++ + + K R+ +PE L A + AL+ + + +A ++ L+ G+ A
Sbjct: 481 AEQAPADYIRRQTLKGAERFITPE-LKAFEDKALSAQSRALAREKALYEELLERLIGHLA 539
Query: 722 EFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFV 781
+ N + RP FV+ H +HI GRHPV++ +L FV
Sbjct: 540 PLQDSASALAELDVLANLAERALNLDLNRPRFVE-H--TCLHIEQGRHPVVEQVLETPFV 596
Query: 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTR 841
ND L A+ +ITGPNMGGKS Y+RQ ALI ++A +GSFVPA+ EL ++D I+TR
Sbjct: 597 ANDLALDADTRML-VITGPNMGGKSTYMRQTALIVLLAHIGSFVPAARCELSLVDRIFTR 655
Query: 842 MGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901
+G+SD + GRSTF+ E++E + IL N T +SLV++DE+GRGTST DG+++A+A + L
Sbjct: 656 IGSSDDLAGGRSTFMVEMSETANILHNATDKSLVLMDEVGRGTSTFDGLSLAWAAAEDLA 715
Query: 902 EHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVP 961
+ LF THY ++ + + +V H++ T H ++ + +L+ V+P
Sbjct: 716 R-TRAFTLFATHYFELT-VLPESQPAVANVHLN-ATEH----------NERIVFLHHVLP 762
Query: 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
G + S+G VAQLA +P I RA +LE
Sbjct: 763 GPASQSYGLAVAQLAGVPSPVIQRAREHLKRLE 795
Score = 103 (41.3 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 35/119 (29%), Positives = 56/119 (47%)
Query: 84 THNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTA 143
T ++TP+ QQ +LK ++PD L+ +G + F EDA+ AAK+L I
Sbjct: 2 TDLSQHTPMMQQYFKLKHQHPDQLMFYRMGDFYELFYEDAKKAAKLLDITLTARGQSGGK 61
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAI--KAHGPGKA-GPFGRGLSALYTKATL 199
+IP + H G+ +VK E+ AI + P + GP R + + T T+
Sbjct: 62 AIPMAGIPFHSAE----GYLAKLVKLGESVAICEQIGDPATSKGPVERQVVRIITPGTV 116
Score = 91 (37.1 bits), Expect = 4.1e-56, Sum P(3) = 4.1e-56
Identities = 22/66 (33%), Positives = 37/66 (56%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
L + + LE+ N S G E TL +++ T SRL+ RW+ PL DR ++ AR ++
Sbjct: 266 LDGASRRNLELDINLSGGRE-NTLQSVVDRCQTAMASRLMSRWLNRPLRDRAVLEARQES 324
Query: 465 VSEIAE 470
++ + E
Sbjct: 325 IACLLE 330
Score = 37 (18.1 bits), Expect = 7.0e-05, Sum P(3) = 7.0e-05
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 544 KQLQQLHIDGEYREKVTSKTLHSALLKRLI 573
K + + + R K L+ LL+RLI
Sbjct: 506 KAFEDKALSAQSRALAREKALYEELLERLI 535
>UNIPROTKB|Q74ZT2 [details] [associations]
symbol:AGOS_AGR116W "AGR116Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
EMBL:AE016820 GenomeReviews:AE016820_GR GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261 PIRSF:PIRSF037677
HOGENOM:HOG000189303 OrthoDB:EOG4F4WK5 RefSeq:NP_986782.2
STRING:Q74ZT2 EnsemblFungi:AAS54606 GeneID:4623084
KEGG:ago:AGOS_AGR116W Uniprot:Q74ZT2
Length = 1167
Score = 450 (163.5 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 118/386 (30%), Positives = 186/386 (48%)
Query: 623 VQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--KVPLNWAKVNSTKKTI 680
+++ +EELD++++ ++ +++ + IELP + VP NW ++ + K T
Sbjct: 720 MRALEEELDAVLSEYKRSFKCSKIQYKDSGKELYTIELPISIAKSVPSNWTQLGANKSTK 779
Query: 681 RYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFG-GYYAEFXXXXXXXXXXXXXXXX 739
RY+SP+V +A A E I+ ++F + +
Sbjct: 780 RYYSPKVQKLARSMAEARELHKILEEGLKGRLYQKFDQNFSTTWFPTIKAISNIDCILSL 839
Query: 740 XXXSRNKNF--VRPVFVDDHEPVQIHICSG-------RHPVLDTIL--LDNFVPNDTNLH 788
S + F RP F D+ +P H +G RHP + + F+PND +L
Sbjct: 840 ARTSESLGFPACRPNFKDEIDPTTGHKLNGYLSFKELRHPCYNAGVNGATEFIPNDVHLG 899
Query: 789 AEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSI 848
++TG N GKS +R + IMAQ+G +VP AEL +D I TR+GA+D+I
Sbjct: 900 KSTAQIALLTGANAAGKSTILRMTCIAVIMAQLGCYVPCEDAELSPMDRIMTRLGANDNI 959
Query: 849 QQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMV 908
QG+STF EL+E IL T ++L+++DELGRG S+ DG AIA L ++ H + +
Sbjct: 960 MQGKSTFFVELSETRKILDMATNRTLIVLDELGRGGSSSDGFAIAEGVLHHISTHVQSLG 1019
Query: 909 LFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSF 968
F THY + G T+H + M + + + VT+LYK++ G SE SF
Sbjct: 1020 FFATHYGTL--------GQSFTHHP--MVKPLQMAILVDEGSKKVTFLYKLIEGQSEGSF 1069
Query: 969 GFKVAQLAQLPPSCISRATVIAAKLE 994
G VA + +P S + A A E
Sbjct: 1070 GMHVAAMCGIPRSVVENAERAAESFE 1095
Score = 149 (57.5 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 31/100 (31%), Positives = 54/100 (54%)
Query: 376 IRHLKQFGLER-IMCLGA--SFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIM 432
+ +L+ L++ ++ +G + L + L TLQ LE+ N+ +G++ GTL ++
Sbjct: 512 LSYLQWLKLDKSLLSMGMVEEYNPLKAQTSLVLDGITLQNLEIFANSFDGTDKGTLFKLV 571
Query: 433 NHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESM 472
N +T G R +R WV HPL + I RLD+V ++ M
Sbjct: 572 NRAITPMGKRQMRTWVMHPLLRKEHIEERLDSVDQLLNEM 611
Score = 111 (44.1 bits), Expect = 1.4e-55, Sum P(3) = 1.4e-55
Identities = 31/114 (27%), Positives = 52/114 (45%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKV--LGIYAHLDHNFMTASI 145
++TP E+Q ++K+K D ++ + G F + +DA +A ++ L I N A I
Sbjct: 239 RFTPFEKQYWQIKSKMWDCIVFFKKGKFFELYEKDAHLANQLFDLKIAGGGRANMQLAGI 298
Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
P + + + G+KV V Q E+ K G G R L + + TL
Sbjct: 299 PEMSFDYWASQFIQHGYKVAKVDQKESMLAKEMREGNKGIVERELQCVLSGGTL 352
Score = 42 (19.8 bits), Expect = 2.3e-48, Sum P(3) = 2.3e-48
Identities = 14/51 (27%), Positives = 21/51 (41%)
Query: 292 QTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNE 342
Q E ML + VE C + GG L ++ L+ + LS +E
Sbjct: 322 QKESMLAKEMREGNKGIVE-RELQCVLSGGTLTDLKMLHSDQSTYCLSIHE 371
>TIGR_CMR|DET_1219 [details] [associations]
symbol:DET_1219 "DNA mismatch repair protein MutS"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_181932.1 ProteinModelPortal:Q3Z767
STRING:Q3Z767 GeneID:3229472 KEGG:det:DET1219 PATRIC:21609473
OMA:HIHAKTL BioCyc:DETH243164:GJNF-1220-MONOMER Uniprot:Q3Z767
Length = 858
Score = 528 (190.9 bits), Expect = 4.3e-55, Sum P(2) = 4.3e-55
Identities = 169/586 (28%), Positives = 286/586 (48%)
Query: 456 NLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDV----TIVEPQFYYILS--SVLTSL 509
+L + L + + +MG + +GQ + D+ + V+ F L+ S+ +L
Sbjct: 280 SLKGSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLAKAL 339
Query: 510 GRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALL 569
G+ D++R RI +T P E I++ ++ + + +H R+ A
Sbjct: 340 GQIADMERIANRIRQKTILPKELISLKNSL----ETVSAIH-----RQFGLMPPPRLAYF 390
Query: 570 KRLILTASSPAVIGKAAKLLSTVNKEAADQ--GDLLNLMIISNGQFSEVARARKAVQSAK 627
L P ++L VN+ D L +I +G E+ + A+
Sbjct: 391 ----LNGLKPL-----PEMLDIVNEAINDDPPSTLGEGKVIRSGFNPEMDKLCSLAGDAR 441
Query: 628 EELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK-VPLNWAKVNSTKKTIRYHSP 685
L + R+Q G+++L+ + IE+ AN +P N+ + + R+ +P
Sbjct: 442 TFLSQMEAREREQTGIKSLKLGYNRVFGYYIEVSNANLADIPQNYIRKQTLVNAERFITP 501
Query: 686 EVLTALDQLAL-ANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSR 744
E L + L L A E L + ++ L + GG+Y+ +
Sbjct: 502 E-LKEYENLILNAKERLLEMETGLYEQVLNQLGGFYSALLSNAAALASLDVLSAFAEVAV 560
Query: 745 NKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL-LDNFVPNDTNLHAEREYCQII--TGPN 801
+VRP+F ++ V IH GRHP+++ L +F ND +L AE CQII TGPN
Sbjct: 561 RNGYVRPLFHSENSLV-IH--RGRHPMVEQGLGYGSFAANDISLSAED--CQIIILTGPN 615
Query: 802 MGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE 861
M GKS Y++Q ALI +MAQ+GS+VPA +AEL + D I++R+GA + + G+STF+ E+ E
Sbjct: 616 MAGKSTYLKQTALIVLMAQIGSYVPAETAELCLTDRIFSRIGAREDLSAGQSTFMVEMVE 675
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK--CMVLFVTHYPKIAD 919
+ IL T++SL+I+DE+GRGTST+DG+AIA A ++Y+ LF THY ++ +
Sbjct: 676 TASILNTATSRSLLILDEIGRGTSTYDGLAIAQAVVEYIHSQPSLHAKTLFATHYHELVE 735
Query: 920 IKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ + V Y+++ S+ +V +L+++VPG + S+G VA+LA LP
Sbjct: 736 L-ANYLPRVKNYNIAV-----------SEDRGEVVFLHRIVPGGVDKSYGIHVAKLAGLP 783
Query: 980 PSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENM 1025
I RA + +LE + R+ + LL+ L++Q E +
Sbjct: 784 GWVIKRAYEVLTELENPAKKEPKIRNCQPQLLLPLTEQTSALAEEI 829
Score = 134 (52.2 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
Identities = 47/165 (28%), Positives = 78/165 (47%)
Query: 360 GIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNN 419
G N+P LAV A + +L++ + L + + S M + ++TL LE+ R++
Sbjct: 219 GCENLP-LAVSAAGALLNYLEETQKSSLKQL-ERLAAYTISDYMQIDSHTLSNLEIFRSS 276
Query: 420 SNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI-AESMGSYRTS 478
S G+LL +++ T T G RLLR+++ PL + I RL AV ES+ +
Sbjct: 277 GGNSLKGSLLGVLDQTKTAMGGRLLRKFLGQPLLRQEDIEKRLSAVDYFFEESLARASLA 336
Query: 479 ESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIF 523
+++GQ + + + IL L SL S + I R F
Sbjct: 337 KALGQIADMERIANRIRQKT--ILPKELISLKNSLETVSAIHRQF 379
Score = 116 (45.9 bits), Expect = 4.3e-55, Sum P(2) = 4.3e-55
Identities = 27/85 (31%), Positives = 46/85 (54%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA---HLDHNFMT--AS 144
TPL +Q +++K YP+ ++ +G + F EDA +AA+ L I + A
Sbjct: 5 TPLRKQYLDIKKNYPEAIVFFRLGDFYETFEEDARIAARELEIVLTSREMGKGLKVPLAG 64
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQ 169
IP L+ ++ RL+N G+KV + +Q
Sbjct: 65 IPYHALDNYLSRLINRGYKVAICEQ 89
Score = 40 (19.1 bits), Expect = 4.3e-47, Sum P(2) = 4.3e-47
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDR 455
++A L+ + R G + L I H L Y SRL+ R +C++
Sbjct: 40 IAARELEIVLTSREMGKGLKV-PLAGIPYHALDNYLSRLINRGYKVAICEQ 89
>UNIPROTKB|P49849 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0030983
GO:GO:0008094 EMBL:U27343 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
GO:GO:0032300 KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 PIR:C69663
RefSeq:NP_389586.2 ProteinModelPortal:P49849 SMR:P49849
EnsemblBacteria:EBBACT00000003342 GeneID:939501 KEGG:bsu:BSU17040
PATRIC:18975215 GenoList:BSU17040 BioCyc:BSUB:BSU17040-MONOMER
Uniprot:P49849
Length = 858
Score = 484 (175.4 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 132/399 (33%), Positives = 213/399 (53%)
Query: 607 IISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELP-AN 663
+I +G ++ R A ++ K+ + L R+ G+R+L+ F V G + IE+ AN
Sbjct: 411 LIKDGYNQKLDEYRDASRNGKDWIARLEQQEREYTGIRSLKVGFNKVFG--YYIEVTKAN 468
Query: 664 FKVPLNWAKVNSTKKTI----RYHSPEVLTALDQLALANEELTIVCRAAWDSF--LKE-F 716
+ L + K+T+ RY +PE+ ++ AL E +C ++ F L+E
Sbjct: 469 LHL-LEEGRYER-KQTLTNAERYITPELK---EKEALILEAENNICELEYELFTELREKV 523
Query: 717 GGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL 776
Y S N+++ +P F D ++ + GRHPV++ ++
Sbjct: 524 KQYIPRLQQLAKQMSELDALQCFATISENRHYTKPEFSKD----EVEVIEGRHPVVEKVM 579
Query: 777 -LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVL 835
+VPN+ + R+ +ITGPNM GKS Y+RQ+ALI IMAQ+G FVPA A L +
Sbjct: 580 DSQEYVPNNCMMGDNRQML-LITGPNMSGKSTYMRQIALISIMAQIGCFVPAKKAVLPIF 638
Query: 836 DGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYA 895
D I+TR+GA+D + G+STF+ E+ EA + N T SL++ DE+GRGTST+DG+A+A A
Sbjct: 639 DQIFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKNSLILFDEIGRGTSTYDGMALAQA 698
Query: 896 TLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTY 955
++Y+ +H LF THY ++ ++ K + HV + + G V +
Sbjct: 699 IIEYVHDHIGAKTLFSTHYHELTVLEDKLP-QLKNVHVR---AEEYNGT--------VVF 746
Query: 956 LYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994
L+++ G ++ S+G VAQLA+LP I+RA I +LE
Sbjct: 747 LHQIKEGAADKSYGIHVAQLAELPGDLIARAQDILKELE 785
Score = 109 (43.4 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 25/88 (28%), Positives = 45/88 (51%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI-YAHLD----HNFMTA 143
YTP+ QQ +++K ++ D L +G + F EDA+ A++ L I D
Sbjct: 4 YTPMIQQYLKIKAEHQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGAAEKIPMC 63
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTE 171
+P + ++ +L+ G+KV + +QTE
Sbjct: 64 GVPYHSASAYIEQLIKKGYKVAICEQTE 91
Score = 97 (39.2 bits), Expect = 5.8e-55, Sum P(3) = 5.8e-55
Identities = 43/160 (26%), Positives = 75/160 (46%)
Query: 313 SRDCFIGGGALAE-VMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQA 371
+R+ + G A+ V L E G T+S ED D H + IE + N D+
Sbjct: 169 AREIVVSGSLDADTVAQLRERCGA-TISI-EDGETD-----EHVTIIEHLNN-EDITKTF 220
Query: 372 LALT--IRHLKQFGLERIMCLGASFRSLSGSMEMTL-SANTLQQLEVLRNNSNGSEYGTL 428
L L ++ ++ L+ + + L +M++ L S L+ E +R+ + + G+L
Sbjct: 221 LRLYTYLKRTQKRSLDHLQPV--QVYELEEAMKIDLYSKRNLELTETIRSKN---KKGSL 275
Query: 429 LHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
L +++ T T G RLL++W+ PL N I R + V +
Sbjct: 276 LWLLDETKTAMGGRLLKQWIDRPLIRVNQIEERQEMVETL 315
>TIGR_CMR|NSE_0335 [details] [associations]
symbol:NSE_0335 "DNA mismatch repair protein MutS"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:CP000237 GenomeReviews:CP000237_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:YP_506224.1 STRING:Q2GE72
GeneID:3931998 KEGG:nse:NSE_0335 PATRIC:22680759
ProtClustDB:CLSK2528033 BioCyc:NSEN222891:GHFU-360-MONOMER
Uniprot:Q2GE72
Length = 815
Score = 506 (183.2 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 124/378 (32%), Positives = 202/378 (53%)
Query: 630 LDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKV----NSTKKTIRYHSP 685
++ L+N ++ G+ +L+ + I + +E+P + PL ++V S IRY +
Sbjct: 451 INDLLNTYKRNTGINSLKLGKNNLIGYYVEVPKS--APLLDSEVFIHRQSLLNNIRYTTL 508
Query: 686 EVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRN 745
E+ Q+A ANE + + + +
Sbjct: 509 ELQNLEAQIAKANENYRKLELELFRELCGKILASEGPLKEMIAAIAELDVIASFAEIAVQ 568
Query: 746 KNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGK 805
+ +VRP VD+ ++ I GRHP ++ + + FVPND + C ++TGPNM GK
Sbjct: 569 RKYVRPQ-VDNSN--ELRISGGRHPFVEQV--NAFVPNDLAFTSAERVC-VLTGPNMAGK 622
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S Y+RQ ALI I+AQ+GSFVPA SA + V+D +++R+GASD+I G+STF+ E+ E + I
Sbjct: 623 STYLRQNALITILAQMGSFVPADSAHIGVVDRVFSRIGASDNIAMGKSTFMVEMMETANI 682
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
+ N T +SLVI+DE+GRGTST DG++IA A L+YL + C +F THY ++ D+++K
Sbjct: 683 VNNATCRSLVILDEVGRGTSTLDGISIAQAVLEYLHDSVNCKTIFATHYNELCDLESKLP 742
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
+ Y + + +V +YK+VPG ++S+G A L+ +P + I R
Sbjct: 743 -RMKCYSIEV-----------KRWRDEVLLMYKIVPGRGDNSYGIHTAMLSGIPEAIIRR 790
Query: 986 ATVIAAKLEAEVSSRVQN 1003
AT IA + + + + N
Sbjct: 791 ATEIAKEKNLSIENSLSN 808
Score = 132 (51.5 bits), Expect = 1.9e-54, Sum P(2) = 1.9e-54
Identities = 37/150 (24%), Positives = 67/150 (44%)
Query: 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNF 140
++++ P ++ +E++ +YPD ++ VG + F EDA + +LG++ + +
Sbjct: 2 SEEFPPAMKRYLEVRCQYPDAVVFYRVGDFYEMFFEDAREVSHLLGLHLTRRGTYKGKDI 61
Query: 141 MTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLX 200
+P V++ +LV G KV + +Q ETA +A G R + L T TL
Sbjct: 62 PMCGVPVSSCEVYINKLVKLGRKVAICEQLETAE-EAKKRGATAIVRRDVVRLVTPGTLT 120
Query: 201 XXXXXXXXXXXXXXXSNYLVCVVDDDGNVG 230
+NYL+CV +G
Sbjct: 121 EDNLLVSGE------NNYLLCVAPGKNEIG 144
Score = 104 (41.7 bits), Expect = 3.4e-10, Sum P(2) = 3.4e-10
Identities = 65/260 (25%), Positives = 111/260 (42%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ L A+T++ LE++ + + G E +LL +++ T T G RLL+ ++ PL I AR
Sbjct: 268 LALDASTIRGLELIESQTPG-EKNSLLQVIDQTCTAGGKRLLKSYIVSPLISVEEIQARQ 326
Query: 463 DAVSE--IAESMGSYRTSESVGQHDEKNSDVTIV----EP-----QFYYILSSVLTSLGR 511
D V I E + +E D + + I EP + SS+L +
Sbjct: 327 DKVEFFFIQEELRKKVRTELANIPDAERALSRIALNRGEPIDCLAVHSCMRSSLLLAECF 386
Query: 512 SPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKR 571
S ++ G R + P + +M+ + A +DG + + T H LL+
Sbjct: 387 SAFLENGYIRSIYDKCAPDD--ELMETLRTAFLPTSNRKVDGPFLDP----THHPKLLEL 440
Query: 572 LILTASSPAVIGKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKE- 628
L+ ++ VI LL+T + L N +I G + EV ++ + S
Sbjct: 441 NRLSTNADVVIND---LLNTYKRNTGINSLKLGKNNLI---GYYVEVPKSAPLLDSEVFI 494
Query: 629 ELDSLINMCR-KQLGMRNLE 647
SL+N R L ++NLE
Sbjct: 495 HRQSLLNNIRYTTLELQNLE 514
>TAIR|locus:2132233 [details] [associations]
symbol:MSH6 "AT4G02070" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006200 "ATP catabolic process"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006290 "pyrimidine dimer repair" evidence=IMP] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0048451 "petal formation"
evidence=RCA] [GO:0048453 "sepal formation" evidence=RCA]
[GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 InterPro:IPR002999
GO:GO:0005524 GO:GO:0009411 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003684 EMBL:AL161493 SMART:SM00333 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
GO:GO:0006290 EMBL:AF001308 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
EMBL:AF001535 EMBL:AJ245967 IPI:IPI00528681 PIR:T01508
RefSeq:NP_192116.1 UniGene:At.34340 ProteinModelPortal:O04716
SMR:O04716 STRING:O04716 PaxDb:O04716 PRIDE:O04716
EnsemblPlants:AT4G02070.1 GeneID:828147 KEGG:ath:AT4G02070
TAIR:At4g02070 HOGENOM:HOG000243127 InParanoid:O04716 KO:K08737
OMA:YHMDAVI PhylomeDB:O04716 ProtClustDB:CLSN2685718
ArrayExpress:O04716 Genevestigator:O04716 GermOnline:AT4G02070
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 Uniprot:O04716
Length = 1324
Score = 587 (211.7 bits), Expect = 1.5e-53, P = 1.5e-53
Identities = 196/669 (29%), Positives = 312/669 (46%)
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSL--------SGSMEMTLSANTLQQLEVLRN 418
LA+ AL I +L+Q L+ + A F SL + M L A L+ LE+ N
Sbjct: 652 LALSALGGAIYYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFEN 711
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTS 478
+ NG GTL +N +T G RLL+ W+ PL + LI R DAV+ + Y
Sbjct: 712 SRNGGYSGTLYAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVAILRGENLPYSL- 770
Query: 479 ESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPS--EFIAVM 536
+ + S + +E + SS+ S GR+ D + + ++ TA EFI+ +
Sbjct: 771 ----EFRKSLSRLPDMERLIARMFSSIEAS-GRNGD--KVV--LYEDTAKKQVQEFISTL 821
Query: 537 QAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEA 596
+ + L + + + LH L+ S I + K K+A
Sbjct: 822 RGCETMAEACSSLR--AILKHDTSRRLLH------LLTPGQSLPNISSSIKYF----KDA 869
Query: 597 ADQGDLLNL--MIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGI 654
D + N +I G E A K V+ + L + RK LG ++ +++V
Sbjct: 870 FDWVEAHNSGRVIPHEGADEEYDCACKTVEEFESSLKKHLKEQRKLLGDASINYVTVGKD 929
Query: 655 THLIELPANFK--VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSF 712
+L+E+P + VP ++ +S K RY +P + L +L+ A E ++
Sbjct: 930 EYLLEVPESLSGSVPHDYELCSSKKGVSRYWTPTIKKLLKELSQAKSEKESALKSISQRL 989
Query: 713 LKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVR--PVFVDDHEPVQIHI-CSGR- 768
+ F + ++ S + VR PV H+ +G
Sbjct: 990 IGRFCEHQEKWRQLVSATAELDVLISLAFASDSYEGVRCRPVISGSTSDGVPHLSATGLG 1049
Query: 769 HPVL--DTILLDNFVPNDTNLH-AEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFV 825
HPVL D++ +FVPN+ + AE+ ++TGPNMGGKS +RQV L I+AQ+G+ V
Sbjct: 1050 HPVLRGDSLGRGSFVPNNVKIGGAEKASFILLTGPNMGGKSTLLRQVCLAVILAQIGADV 1109
Query: 826 PASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTS 885
PA + E+ +D I RMGA D I G+STFL EL+E + +L + T SLV++DELGRGT+
Sbjct: 1110 PAETFEVSPVDKICVRMGAKDHIMAGQSTFLTELSETAVMLTSATRNSLVVLDELGRGTA 1169
Query: 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTKFTGSVGTYHVSYLTSHKVMGP 944
T DG AIA + L++ +E +C F THY +++ D +T V H++ + G
Sbjct: 1170 TSDGQAIAESVLEHFIEKVQCRGFFSTHYHRLSVDYQTN--PKVSLCHMACQIGEGIGGV 1227
Query: 945 MDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNR 1004
++VT+LY++ PG S+G VA+LA LP + RA + + + EA +
Sbjct: 1228 ------EEVTFLYRLTPGACPKSYGVNVARLAGLPDYVLQRAVIKSQEFEALYGKNHRKT 1281
Query: 1005 SAKRDLLVK 1013
K ++K
Sbjct: 1282 DHKLAAMIK 1290
Score = 217 (81.4 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 99/398 (24%), Positives = 164/398 (41%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIP 146
KK T ++Q E K K+ D ++ ++G + F DA + AK L I ++ P
Sbjct: 377 KKLTGGQRQWWEFKAKHMDKVVFFKMGKFYELFEMDAHVGAKELDIQ-YMKGEQPHCGFP 435
Query: 147 TFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGP----FGRGLSALYTKATLXXX 202
+V++ +LV G++V VV+QTET + G R + A+ TK TL
Sbjct: 436 EKNFSVNIEKLVRKGYRVLVVEQTETPDQLEQRRKETGSKDKVVKREVCAVVTKGTLTDG 495
Query: 203 XXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEF 262
++YL+ + + G + N F GV V+++T ++ G+F
Sbjct: 496 EMLLTNPD-----ASYLMALTEG-GE--SLTNPTAEHNF----GVCLVDVATQKIILGQF 543
Query: 263 NDGFLRSGXXXXXXXXXXXXXXX-GQPLSKQTEKMLLAYA-GPASNVRVECASRDCFIGG 320
D S + LS TE+ ++ P N V + + +
Sbjct: 544 KDDQDCSALSCLLSEMRPVEIIKPAKVLSYATERTIVRQTRNPLVNNLVPLS--EFWDSE 601
Query: 321 GALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD----LAVQALALTI 376
+ EV +Y+ + S + + + + + + D LA+ AL I
Sbjct: 602 KTIYEVGIIYKRINCQPSSAYSSEGKILGDGSSFLPKMLSELATEDKNGSLALSALGGAI 661
Query: 377 RHLKQFGLERIMCLGASFRSL--------SGSMEMTLSANTLQQLEVLRNNSNGSEYGTL 428
+L+Q L+ + A F SL + M L A L+ LE+ N+ NG GTL
Sbjct: 662 YYLRQAFLDESLLRFAKFESLPYCDFSNVNEKQHMVLDAAALENLEIFENSRNGGYSGTL 721
Query: 429 LHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVS 466
+N +T G RLL+ W+ PL + LI R DAV+
Sbjct: 722 YAQLNQCITASGKRLLKTWLARPLYNTELIKERQDAVA 759
>UNIPROTKB|Q5VR41 [details] [associations]
symbol:OJ1174_D05.15 "Os01g0180600 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 EMBL:AP008207 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
SUPFAM:SSF53150 KO:K08737 InterPro:IPR015536 PANTHER:PTHR11361:SF31
HOGENOM:HOG000030287 ProtClustDB:CLSN2680110 EMBL:AP003047
EMBL:AP003118 RefSeq:NP_001042208.1 UniGene:Os.74356 STRING:Q5VR41
EnsemblPlants:LOC_Os01g08540.1 GeneID:4325353 KEGG:osa:4325353
OMA:KFYELYD Uniprot:Q5VR41
Length = 1224
Score = 423 (154.0 bits), Expect = 9.4e-53, Sum P(3) = 9.4e-53
Identities = 92/246 (37%), Positives = 140/246 (56%)
Query: 769 HPVLDTILLDNFVPNDT----NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSF 824
HP ++ VPND NL + + ++TGPNMGGKS +R L ++AQ+G +
Sbjct: 938 HPYAFAESVNGLVPNDLSLGQNLSGQNRFALLLTGPNMGGKSTIMRATCLAIVLAQLGCY 997
Query: 825 VPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGT 884
VP S EL + D I+TR+GA D I G STFL E E + IL N T SLV++DELGRGT
Sbjct: 998 VPCQSCELTLADAIFTRIGAMDRIMSGESTFLVECTETASILENATEDSLVLLDELGRGT 1057
Query: 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHY-PKIADIKTKFTGSVGTYHVSYLTSHKVMG 943
ST DG AIAYA +L+E +C +LF THY P + + V H++ + + G
Sbjct: 1058 STFDGYAIAYAVFRHLVEAVRCRLLFATHYHPLTKEFASH--PHVTLQHMACMLKPRNGG 1115
Query: 944 PMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN 1003
D ++++T+LY++ G S+G +VA +A LP S + RA+ + ++++ ++
Sbjct: 1116 --DG-GEKELTFLYRLTSGACPESYGLQVATMAGLPRSIVERASAAGEMMRSKIAGNFRS 1172
Query: 1004 RSAKRD 1009
+ +
Sbjct: 1173 SEERAE 1178
Score = 166 (63.5 bits), Expect = 9.4e-53, Sum P(3) = 9.4e-53
Identities = 53/185 (28%), Positives = 86/185 (46%)
Query: 289 LSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDV 348
LSK+T +++ YA A +V+++ ++E+ +L ++ G S +
Sbjct: 587 LSKETHRLIKKYAS-AGSVKMQLTPLYGLYFSD-VSEIQTLIDSRGYFKASTS------- 637
Query: 349 PEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSAN 408
+ SA+ +N D + AL + HL + LE + G + +
Sbjct: 638 ----SWLSALNSSVNK-DAVICALGGLVSHLTRLMLEDALKNGEVLAYHVYRTCLRMDGQ 692
Query: 409 TLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
TL LE+ NN +G GTL +NH +T G RLLRRW+ HPL D + I+ RLD V
Sbjct: 693 TLVNLEIFSNNFDGGSSGTLYKHLNHCITPCGKRLLRRWICHPLKDIDAINERLDIVEGF 752
Query: 469 AESMG 473
++ G
Sbjct: 753 IQNCG 757
Score = 97 (39.2 bits), Expect = 9.4e-53, Sum P(3) = 9.4e-53
Identities = 32/115 (27%), Positives = 55/115 (47%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH--NFMTAS 144
+K + ++Q +K KY DV+L +VG + + DAE+ K L +
Sbjct: 401 RKMSTSQKQYWNIKCKYMDVVLFFKVGKFYELYEVDAEIGQKELDWKMTISGVGKCRQVG 460
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
I ++V V +L+ G+KVG ++Q E+A +A G R L + T +T+
Sbjct: 461 ISESGIDVAVEKLLARGYKVGRIEQMESAD-QAKSRGSNSVILRKLVHVSTPSTV 514
Score = 54 (24.1 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 39/172 (22%), Positives = 77/172 (44%)
Query: 445 RRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIV-EPQFYYILS 503
RR + PL D+ + DA+ +++ S Y + K DV + + +Y L
Sbjct: 380 RRRLADPLYDKTTLFIPPDALRKMSTSQKQYWNIKC------KYMDVVLFFKVGKFYELY 433
Query: 504 SVLTSLGRSP-DIQRGITRIFH-RTATPSEF-IAV-MQAILYAGKQLQQLHIDGEYREKV 559
V +G+ D + I+ + R SE I V ++ +L G ++ ++ E ++
Sbjct: 434 EVDAEIGQKELDWKMTISGVGKCRQVGISESGIDVAVEKLLARGYKVGRIE-QMESADQA 492
Query: 560 TSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNG 611
S+ +S +L++L+ S+P+ +G S + +A L + + SNG
Sbjct: 493 KSRGSNSVILRKLV-HVSTPSTVGD-----SNIGADAVHLLSLKEITLASNG 538
Score = 41 (19.5 bits), Expect = 3.0e-35, Sum P(3) = 3.0e-35
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 313 SRDCFIGGGALAEVMSLYENM 333
S+D F+ L+ + LY+N+
Sbjct: 127 SKDDFVRASTLSPELGLYQNL 147
>UNIPROTKB|Q7RKG5 [details] [associations]
symbol:PY02936 "G/T mismatch binding protein-related"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150
KO:K08737 InterPro:IPR017261 InterPro:IPR015536
PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677 EMBL:AABL01000828
RefSeq:XP_730891.1 ProteinModelPortal:Q7RKG5 STRING:Q7RKG5
GeneID:3830116 KEGG:pyo:PY02936 EuPathDB:PlasmoDB:PY02936
Uniprot:Q7RKG5
Length = 1261
Score = 442 (160.7 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 100/254 (39%), Positives = 156/254 (61%)
Query: 769 HPVLDTILLDNFVPNDTNLHA--EREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVP 826
HPV+ T L+ NF+PN+ + E+E ++TGPNMGGKS +RQ A+ I+AQ+G+FVP
Sbjct: 983 HPVVAT-LMPNFIPNNIYMGCDKEKETTLLLTGPNMGGKSTLLRQTAISVILAQIGAFVP 1041
Query: 827 ASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTST 886
++ EL ++D I+TR+G+SD++ +G+STFL EL + S +L+ T SL I+DELGRGTS+
Sbjct: 1042 STYCELTIVDKIFTRLGSSDNLFEGKSTFLVELEDISNLLKQSTKYSLAILDELGRGTSS 1101
Query: 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMD 946
DG AIA +TL+ + + KC +F THY + + + K ++ YH+S +
Sbjct: 1102 FDGTAIALSTLEQISDVIKCRCIFSTHYHLLVE-EVKHNTNISNYHMS----------LS 1150
Query: 947 SKSDQD-VTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA---TVIAAKLEAEVSSRVQ 1002
DQ+ + +LYK + G+ SFG +A+LA LP I A +++ + E ++
Sbjct: 1151 IDDDQEKIIFLYKFIKGICPKSFGIHIAKLAGLPKEIIELAHEKSLLFENVTDEFCKIIK 1210
Query: 1003 NRSAKRDLLVKLSD 1016
++ R LL K SD
Sbjct: 1211 YKNIIRSLL-KASD 1223
Score = 125 (49.1 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 43/184 (23%), Positives = 81/184 (44%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTF 148
YTP QQ ++K+K D ++ ++G + F DA + + G+ P
Sbjct: 300 YTPGMQQFWKIKSKNFDKIIFFKMGRFYEIFYIDACIMHTICGLNWMNGEQKPHLGFPEQ 359
Query: 149 RLNVHVRRLVNAGFKVGVVKQTETAA-IKAHGPGKAGP----FGRGLSALYTKATLXXXX 203
L+++ ++++N+G KV V++Q ET ++ +GP R ++ +YTK T+
Sbjct: 360 SLHLYAKKVINSGHKVVVIEQMETPKELEQRNKTSSGPKDKAIKREINEIYTKGTILHDN 419
Query: 204 XXXXXXXXXXXXSNYLVCV-VDDDGNVGKIRNGVFGDGFDVR--LGVVAVEISTGDVVYG 260
+ Y++C DD ++G N G + G V +++T + G
Sbjct: 420 MLSAE-------TKYIICFHFDDIEDIGDDDNNNNNAGSQTKCNFGFVVSDVATSYISVG 472
Query: 261 EFND 264
ND
Sbjct: 473 YCND 476
Score = 113 (44.8 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L A L+ LE+L S G +L +N T T +G+R +RRWV PL + + I+ RL
Sbjct: 593 MVLDATALKHLEILETQS-GETKNSLYDYVNKTCTNFGARNMRRWVCSPLLNCDKINQRL 651
Query: 463 DAV 465
D V
Sbjct: 652 DVV 654
Score = 45 (20.9 bits), Expect = 2.9e-52, Sum P(4) = 2.9e-52
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 485 DEKNSDVTIVE--PQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAV 535
D+ N + +VE + +ILS + L + PDI+R + +I + A+ SE AV
Sbjct: 645 DKINQRLDVVEFLRKNDHILSLIRLKLKKLPDIERLLNKICIQ-ASQSERGAV 696
>RGD|1563954 [details] [associations]
symbol:Msh3 "mutS homolog 3 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=ISO] [GO:0003684 "damaged DNA
binding" evidence=ISO] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair" evidence=ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0019237 "centromeric DNA binding" evidence=ISO] [GO:0019899
"enzyme binding" evidence=ISO] [GO:0032302 "MutSbeta complex"
evidence=ISO] [GO:0043570 "maintenance of DNA repeat elements"
evidence=ISO] [GO:0045910 "negative regulation of DNA
recombination" evidence=ISO] [GO:0051096 "positive regulation of
helicase activity" evidence=ISO] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0042803 "protein
homodimerization activity" evidence=ISO] [GO:0032357 "oxidized
purine DNA binding" evidence=ISO] [GO:0003697 "single-stranded DNA
binding" evidence=ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0032139 "dinucleotide insertion or deletion
binding" evidence=ISO] [GO:0032142 "single guanine insertion
binding" evidence=ISO] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=ISO] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000710
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOGENOM:HOG000029776
GO:GO:0016447 IPI:IPI00196502 UniGene:Rn.162551 EMBL:BC091283
ProteinModelPortal:Q5BJY1 STRING:Q5BJY1 UCSC:RGD:1563954
HOVERGEN:HBG071048 InParanoid:Q5BJY1 ArrayExpress:Q5BJY1
Genevestigator:Q5BJY1 Uniprot:Q5BJY1
Length = 265
Score = 549 (198.3 bits), Expect = 3.7e-52, P = 3.7e-52
Identities = 108/220 (49%), Positives = 155/220 (70%)
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
TNL ++ E IITGPNMGGKS YI+QVAL+ IMAQ+GS+VPA A + ++DGI+TR GA
Sbjct: 1 TNL-SDSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRRGA 59
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
+D+I +GRSTF+EEL + + I++ T +SLVI+DELGRGTSTHDG+AIAYATL+Y +
Sbjct: 60 ADNIYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDV 119
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT----SHKVMGPMDSKSDQDVTYLYKVV 960
K + LFVTHYP + +++ ++ VG YH+ +L S + G M+ D VT+LY++
Sbjct: 120 KSLTLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDS-VTFLYQIT 178
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
G++ S+G VA+LA +P + +A + +LE V+ R
Sbjct: 179 RGIAARSYGLNVAKLADVPREILQKAAHKSKELEGLVNLR 218
>UNIPROTKB|O66652 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:224324 "Aquifex aeolicus VF5" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] HAMAP:MF_00096
InterPro:IPR000432 InterPro:IPR005748 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 EMBL:AE000657 GenomeReviews:AE000657_GR
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 PIR:H70327 RefSeq:NP_213212.1
ProteinModelPortal:O66652 GeneID:1192886 KEGG:aae:aq_308
PATRIC:20958222 HOGENOM:HOG000221406 OMA:ITQTVRD
BioCyc:AAEO224324:GJBH-228-MONOMER Uniprot:O66652
Length = 859
Score = 481 (174.4 bits), Expect = 4.2e-52, Sum P(4) = 4.2e-52
Identities = 106/278 (38%), Positives = 168/278 (60%)
Query: 746 KNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGK 805
K++ +P HE ++ I GRHPV++ + +N+VPNDT L + + +ITGPNM GK
Sbjct: 559 KDWAKPQI---HEGYELIIEEGRHPVIEEFV-ENYVPNDTKLDRD-SFIHVITGPNMAGK 613
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S YIRQV ++ +++ +GSF+PA A++ V+D ++TR+G+ D + G STF+ E+ E S I
Sbjct: 614 SSYIRQVGVLTLLSHIGSFIPARRAKIPVVDALFTRIGSGDVLALGVSTFMNEMLEVSNI 673
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
L N T +SLVI+DE+GRGTST+DG+AI+ A + Y+ E K L TH+ +I +++ K
Sbjct: 674 LNNATEKSLVILDEVGRGTSTYDGIAISKAIVKYISEKLKAKTLLATHFLEITELEGKIE 733
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
G V YH+ K+ + + +LY + G +E SFG +VA+LA LP +
Sbjct: 734 G-VKNYHMEV-----------EKTPEGIRFLYILKEGKAEGSFGIEVAKLAGLPEEVVEE 781
Query: 986 ATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQE 1023
A I +LE E ++ ++ + K S++ Q +E
Sbjct: 782 ARKILRELE-EKENKKEDIVPLLEETFKKSEEAQRLEE 818
Score = 121 (47.7 bits), Expect = 4.2e-52, Sum P(4) = 4.2e-52
Identities = 31/99 (31%), Positives = 48/99 (48%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHL------DHNF 140
K+ TP+ Q K +YPD LL+ +G + F EDA + +K LG+
Sbjct: 6 KELTPMLSQYHYFKNQYPDCLLLFRLGDFYELFYEDAYIGSKELGLVLTSRPAGKGKERI 65
Query: 141 MTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHG 179
+P N ++ +LVN G+KV + +Q E + KA G
Sbjct: 66 PMCGVPYHSANSYIAKLVNKGYKVAICEQVEDPS-KAKG 103
Score = 57 (25.1 bits), Expect = 4.2e-52, Sum P(4) = 4.2e-52
Identities = 18/67 (26%), Positives = 32/67 (47%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
L ++ LE+L + G + +L +++ TLT G R L+ + P R I +
Sbjct: 260 LDIKAIKGLEILES-LEGRKDISLFKVIDRTLTGMGRRRLKFRLLSPFRSREKIERIQEG 318
Query: 465 VSEIAES 471
V E+ E+
Sbjct: 319 VQELKEN 325
Score = 43 (20.2 bits), Expect = 4.2e-52, Sum P(4) = 4.2e-52
Identities = 9/38 (23%), Positives = 23/38 (60%)
Query: 514 DIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHI 551
D++R +++I ATP E + + ++ K++++L +
Sbjct: 341 DLERLVSKISSNMATPRELVYLKNSL----KKVEELRL 374
Score = 43 (20.2 bits), Expect = 0.00038, Sum P(4) = 0.00038
Identities = 11/47 (23%), Positives = 26/47 (55%)
Query: 1008 RDLLVKLSDQEQEAQENMPVSPESFYLG----RVEASEDLISAYRDL 1050
R +L +L ++E + ++ +P+ E+F R+E E++I ++
Sbjct: 783 RKILRELEEKENKKEDIVPLLEETFKKSEEAQRLEEYEEIIKKIEEI 829
>TIGR_CMR|ECH_0824 [details] [associations]
symbol:ECH_0824 "DNA mismatch repair protein MutS"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0005524
"ATP binding" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:YP_507620.1
ProteinModelPortal:Q2GG13 STRING:Q2GG13 GeneID:3926941
KEGG:ech:ECH_0824 PATRIC:20577070
BioCyc:ECHA205920:GJNR-827-MONOMER Uniprot:Q2GG13
Length = 804
Score = 428 (155.7 bits), Expect = 5.9e-52, Sum P(3) = 5.9e-52
Identities = 93/249 (37%), Positives = 150/249 (60%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++ +P+ D +E +I GRHPV++ FV ND +L + +ITGPNM GKS
Sbjct: 568 SYTKPIVDDSYE---FNIKKGRHPVVERN--GKFVANDIDLSLMQRV-HLITGPNMAGKS 621
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ ALIGI+A +GSFVPA A + V+D +++R+GASD+I G STF+ E+ E + I+
Sbjct: 622 TFLRQNALIGILAHIGSFVPAQHAHIGVIDKVFSRVGASDNIASGHSTFMVEMTETAAII 681
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
T +S VI+DE+GRGT T+DG++IA++ ++ + K +F THY +++ +
Sbjct: 682 NQATDKSFVILDEIGRGTGTYDGLSIAWSVIEQIHNVNKSRAIFATHYHELSKLDR---- 737
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
YL + K + + V +L++++PG + S+G VA+LA P S + RA
Sbjct: 738 --------YLENIKCFCMKVEEWNGKVVFLHEIIPGSTNKSYGIHVAKLAGFPQSVLDRA 789
Query: 987 TVIAAKLEA 995
+ +KL+A
Sbjct: 790 EDLMSKLKA 798
Score = 145 (56.1 bits), Expect = 5.9e-52, Sum P(3) = 5.9e-52
Identities = 39/144 (27%), Positives = 66/144 (45%)
Query: 85 HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTAS 144
H+ K TP+ QQ + LK++Y + LL +G + F +DA +++L I N
Sbjct: 3 HDSKITPIMQQYMMLKSQYKEYLLFYRLGDFYELFFDDAIETSRILNIVLTKKGNVPMCG 62
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXX 204
+P ++ RLV G+K+ + +Q ET+ +A G R + + T T+
Sbjct: 63 VPFHSSESYLNRLVKLGYKIAICEQLETSE-EAKKRGYKALVKRDVVRIVTPGTILEDSL 121
Query: 205 XXXXXXXXXXXSNYLVCVVDDDGN 228
+NYL C+V+ D N
Sbjct: 122 LEAKE------NNYLSCIVNVDHN 139
Score = 92 (37.4 bits), Expect = 5.9e-52, Sum P(3) = 5.9e-52
Identities = 23/63 (36%), Positives = 37/63 (58%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M + A L+ LE+ S E G+L+ +++T+T G RLL+R ++ PL + I+ RL
Sbjct: 267 MFIDAAALRNLELFCTQSGDLE-GSLISSIDYTITACGGRLLKRCLSAPLACSHAINRRL 325
Query: 463 DAV 465
D V
Sbjct: 326 DIV 328
>TIGR_CMR|SPO_0011 [details] [associations]
symbol:SPO_0011 "DNA mismatch repair protein MutS"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0005524 "ATP binding"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0006298 GO:GO:0030983
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
HOGENOM:HOG000221407 KO:K03555 ProtClustDB:PRK05399
PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070 RefSeq:YP_165284.1
ProteinModelPortal:Q5LWH0 PRIDE:Q5LWH0 GeneID:3194479
KEGG:sil:SPO0011 PATRIC:23373251 Uniprot:Q5LWH0
Length = 877
Score = 459 (166.6 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 106/257 (41%), Positives = 161/257 (62%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILL----DNFVPNDTNLHAEREYC-QII 797
+R +N+ RP VD I GRHPV++ L D FV ND +L A++ +++
Sbjct: 572 ARAENWCRPS-VDPSRAFAIE--GGRHPVVEHALRRQGGDPFVANDCDLSADKGAAIRLL 628
Query: 798 TGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857
TGPNM GKS Y+RQ ALI ++AQ+GS+VPA SA + V+ +++R+GASD + +GRSTF+
Sbjct: 629 TGPNMAGKSTYLRQNALITLLAQIGSYVPADSAHIGVVSQLFSRVGASDDLARGRSTFMV 688
Query: 858 ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917
E+ E + IL +LVI+DE+GRGT+T+DG++IA+ATL++L +C LF THY ++
Sbjct: 689 EMVETAAILNQADDHALVILDEIGRGTATYDGLSIAWATLEHLHATNRCRALFATHYHEL 748
Query: 918 ADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQ 977
+ G V LT + + +V +L++V G ++ S+G +VAQLA
Sbjct: 749 TALAATLDG------VENLTVAV------KEWEGEVIFLHEVRKGAADRSYGVQVAQLAG 796
Query: 978 LPPSCISRATVIAAKLE 994
LPPS ++RA V+ +LE
Sbjct: 797 LPPSVVARARVVLDQLE 813
Score = 113 (44.8 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 34/115 (29%), Positives = 51/115 (44%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA-----HLDHNFMTAS 144
TP+ Q +E+K Y D LL +G + F +DA AA+ L I H +
Sbjct: 5 TPMMAQYLEIKEAYADALLFYRMGDFYEMFFDDAVAAAEALDIALTKRGKHEGEDIPMCG 64
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
+P ++ L+ GF+V V +Q E+ A +A G R + L T TL
Sbjct: 65 VPVHAAEGYLLTLIRKGFRVAVCEQMESPA-EAKKRGSKSVVRRDVVRLVTPGTL 118
Score = 86 (35.3 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 23/63 (36%), Positives = 39/63 (61%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M + A T + LE+ R+ S G G+LL +++ T+T G+RLL + + P + ++I ARL
Sbjct: 268 MQIDAATRRNLELTRSLS-GERGGSLLSVIDRTVTPGGARLLEQRLGSPSRNLDVIHARL 326
Query: 463 DAV 465
A+
Sbjct: 327 SAL 329
Score = 42 (19.8 bits), Expect = 2.1e-51, Sum P(4) = 2.1e-51
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 501 ILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAI 539
+ + + +L ++PD+ R ++R+ P + A+ +
Sbjct: 338 LAADLRAALRKTPDLDRALSRLALDRGGPRDLAAIRNGL 376
Score = 40 (19.1 bits), Expect = 2.2e-46, Sum P(3) = 2.2e-46
Identities = 27/106 (25%), Positives = 41/106 (38%)
Query: 509 LGRSPDIQRG--ITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTL-H 565
L RS +RG + + RT TP + Q + + L +H R + H
Sbjct: 280 LTRSLSGERGGSLLSVIDRTVTPGGARLLEQRLGSPSRNLDVIHA----RLSALDFCIDH 335
Query: 566 SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNG 611
S L A A + K L +++ A D+G +L I NG
Sbjct: 336 STL------AADLRAALRKTPDLDRALSRLALDRGGPRDLAAIRNG 375
Score = 38 (18.4 bits), Expect = 1.3e-43, Sum P(4) = 1.3e-43
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 330 YENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTI 376
YE +D ++ E ++ + ++G H + +P A + LT+
Sbjct: 31 YEMFFDDAVAAAEALDIALTKRGKHEGEDIPMCGVPVHAAEGYLLTL 77
>TAIR|locus:1005716529 [details] [associations]
symbol:MSH7 "AT3G24495" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP
catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0000911 "cytokinesis by cell plate formation" evidence=RCA]
[GO:0006260 "DNA replication" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0007067 "mitosis" evidence=RCA] [GO:0007126
"meiosis" evidence=RCA] [GO:0007129 "synapsis" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0010564 "regulation of cell cycle process" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0009411 GO:GO:0003684 EMBL:AB020746
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737
InterPro:IPR015536 PANTHER:PTHR11361:SF31 EMBL:AJ007792
EMBL:AF193018 EMBL:AF009657 IPI:IPI00538811 RefSeq:NP_850630.1
UniGene:At.6244 ProteinModelPortal:Q9SMV7 SMR:Q9SMV7 STRING:Q9SMV7
PaxDb:Q9SMV7 PRIDE:Q9SMV7 EnsemblPlants:AT3G24495.1 GeneID:822040
KEGG:ath:AT3G24495 GeneFarm:5083 TAIR:At3g24495
HOGENOM:HOG000030287 InParanoid:Q9SMV7 OMA:ELDEWRM PhylomeDB:Q9SMV7
ProtClustDB:CLSN2680110 Genevestigator:Q9SMV7 GermOnline:AT3G24495
Uniprot:Q9SMV7
Length = 1109
Score = 407 (148.3 bits), Expect = 6.6e-51, Sum P(4) = 6.6e-51
Identities = 97/273 (35%), Positives = 143/273 (52%)
Query: 767 GRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVP 826
G+ PV + ILL + ++H ++TGPNMGGKS +R L I AQ+G +VP
Sbjct: 824 GQLPVPNDILLGEARRSSGSIHPRS---LLLTGPNMGGKSTLLRATCLAVIFAQLGCYVP 880
Query: 827 ASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTST 886
S E+ ++D I+TR+GASD I G STFL E E + +L+N T SLVI+DELGRGTST
Sbjct: 881 CESCEISLVDTIFTRLGASDRIMTGESTFLVECTETASVLQNATQDSLVILDELGRGTST 940
Query: 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMD 946
DG AIAY+ +L+E +C +LF THY + + S P
Sbjct: 941 FDGYAIAYSVFRHLVEKVQCRMLFATHYHPLTKEFASHPRVTSKHMACAFKSRSDYQPRG 1000
Query: 947 SKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEV-----SSRV 1001
DQD+ +LY++ G S+G +VA +A +P + A+ A ++ + SS +
Sbjct: 1001 C--DQDLVFLYRLTEGACPESYGLQVALMAGIPNQVVETASGAAQAMKRSIGENFKSSEL 1058
Query: 1002 QNR--SAKRDLLVKLSDQEQEAQENMPVSPESF 1032
++ S D L L + A N P+ + +
Sbjct: 1059 RSEFSSLHEDWLKSLVGISRVAHNNAPIGEDDY 1091
Score = 167 (63.8 bits), Expect = 6.6e-51, Sum P(4) = 6.6e-51
Identities = 65/225 (28%), Positives = 102/225 (45%)
Query: 289 LSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDV 348
LS++ +K L Y S V+ A +G A V ++ E+ G ++E N
Sbjct: 452 LSREAQKALRKYTLTGSTA-VQLAPVPQVMGDTDAAGVRNIIESNGYFK-GSSESWNC-- 507
Query: 349 PEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSAN 408
A++G+ N D+A+ AL I HL + LE ++ G F + +
Sbjct: 508 --------AVDGL-NECDVALSALGELINHLSRLKLEDVLKHGDIFPYQVYRGCLRIDGQ 558
Query: 409 TLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
T+ LE+ N+ +G GTL +++ ++ G RLLR W+ HPL D I+ RLD V E
Sbjct: 559 TMVNLEIFNNSCDGGPSGTLYKYLDNCVSPTGKRLLRNWICHPLKDVESINKRLDVVEEF 618
Query: 469 AESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSP 513
+ S + + GQ+ K D+ E I SSV +S P
Sbjct: 619 TANSESMQIT---GQYLHKLPDL---ERLLGRIKSSVRSSASVLP 657
Score = 96 (38.9 bits), Expect = 6.6e-51, Sum P(4) = 6.6e-51
Identities = 32/115 (27%), Positives = 56/115 (48%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH--NFMTAS 144
KK + ++Q +K++Y D++L +VG + + DAE+ K L +
Sbjct: 265 KKMSASQKQYWSVKSEYMDIVLFFKVGKFYELYELDAELGHKELDWKMTMSGVGKCRQVG 324
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETA-AIKAHGPGKAGPFGRGLSALYTKAT 198
I ++ V++L+ G+KVG ++Q ET+ KA G P R L + T +T
Sbjct: 325 ISESGIDEAVQKLLARGYKVGRIEQLETSDQAKARGANTIIP--RKLVQVLTPST 377
Score = 41 (19.5 bits), Expect = 6.6e-51, Sum P(4) = 6.6e-51
Identities = 26/105 (24%), Positives = 49/105 (46%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQL--QQLHIDGE----YREKVT-- 560
L + PD++R + RI +++ S +V+ A+L GK++ Q++ G+ +R +
Sbjct: 632 LHKLPDLERLLGRI--KSSVRSS-ASVLPALL--GKKVLKQRVKAFGQIVKGFRSGIDLL 686
Query: 561 -SKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLN 604
+ S ++ L P ++GK+ L EAA D N
Sbjct: 687 LALQKESNMMSLLYKLCKLPILVGKSGLELFLSQFEAAIDSDFPN 731
>TIGR_CMR|BA_3905 [details] [associations]
symbol:BA_3905 "DNA mismatch repair protein MutS"
species:198094 "Bacillus anthracis str. Ames" [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006298
GO:GO:0030983 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 OMA:HYFELTV
KO:K03555 ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34
TIGRFAMs:TIGR01070 HOGENOM:HOG000221406 RefSeq:NP_846152.1
RefSeq:YP_020544.1 RefSeq:YP_029871.1 ProteinModelPortal:Q81WR3
DNASU:1087964 EnsemblBacteria:EBBACT00000010607
EnsemblBacteria:EBBACT00000017303 EnsemblBacteria:EBBACT00000020116
GeneID:1087964 GeneID:2814777 GeneID:2848878 KEGG:ban:BA_3905
KEGG:bar:GBAA_3905 KEGG:bat:BAS3618
BioCyc:BANT260799:GJAJ-3677-MONOMER
BioCyc:BANT261594:GJ7F-3794-MONOMER Uniprot:Q81WR3
Length = 892
Score = 461 (167.3 bits), Expect = 8.0e-51, Sum P(3) = 8.0e-51
Identities = 111/311 (35%), Positives = 184/311 (59%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDN-FVPNDTNLHAEREYCQIITGPN 801
S + FV+PV E I I GRHPV++ +L +VPND + E +ITGPN
Sbjct: 554 SEEEQFVKPVLTTKRE---IFIKDGRHPVVEKVLNGKLYVPNDC-IMPENMDVFLITGPN 609
Query: 802 MGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE 861
M GKS Y+RQ+AL+ +M+Q+G FVPA+ A L V D I+TR+GA+D + G+STF+ E+ E
Sbjct: 610 MSGKSTYMRQLALVTVMSQIGCFVPATEAVLPVFDQIFTRIGAADDLISGQSTFMVEMLE 669
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921
A + N + +SL++ DE+GRGTST+DG+A+A A ++++ + LF THY ++ ++
Sbjct: 670 AKNAIANASERSLILFDEIGRGTSTYDGMALAQAIIEHIHDQIGAKTLFSTHYHELTVLE 729
Query: 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPS 981
+ HVS + + + V +L+K+ G ++ S+G VAQLA+LP S
Sbjct: 730 DSLD-QLKNVHVSAI-----------EENGKVVFLHKIQDGAADKSYGIHVAQLAELPDS 777
Query: 982 CISRATVIAAKLEAE----VSSRVQNRSAKRDLL---VKLSDQEQEAQE----NMPVSPE 1030
I+RA + A+LE + + RV+ ++ +++++ + + ++ E +E N S
Sbjct: 778 LIARAKEVLAQLEGQEEIVIPKRVEVKAQEQEVIPEPIVVKEEPIEIEETKVDNEEESQL 837
Query: 1031 SFYLGRVEASE 1041
SF+ G ++S+
Sbjct: 838 SFF-GAEQSSK 847
Score = 104 (41.7 bits), Expect = 8.0e-51, Sum P(3) = 8.0e-51
Identities = 29/89 (32%), Positives = 42/89 (47%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
+YTP+ QQ +++K Y D L +G + F EDA AA L I + IP
Sbjct: 3 QYTPMIQQYLKVKADYQDAFLFFRLGDFYEMFFEDAVKAAHELEITLTSRDGGSSERIPM 62
Query: 148 FRLNVH-----VRRLVNAGFKVGVVKQTE 171
+ H + +LV G+KV V +Q E
Sbjct: 63 CGVPYHAAKNYIEQLVEKGYKVAVCEQVE 91
Score = 90 (36.7 bits), Expect = 8.0e-51, Sum P(3) = 8.0e-51
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M + ++ + LE+ + G+LL +++ T T G R+L++W+ PL + I RL
Sbjct: 254 MKIDVHSKRNLELTETLRTKEKTGSLLWLLDKTKTAMGGRMLKQWMERPLIQKERIEERL 313
Query: 463 DAV 465
+ V
Sbjct: 314 EMV 316
>UNIPROTKB|F1LXQ9 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 RGD:1563954 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 IPI:IPI00950406
Ensembl:ENSRNOT00000067613 ArrayExpress:F1LXQ9 Uniprot:F1LXQ9
Length = 266
Score = 532 (192.3 bits), Expect = 2.6e-50, P = 2.6e-50
Identities = 105/217 (48%), Positives = 151/217 (69%)
Query: 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM--GASDS 847
+ E IITGPNMGGKS YI+QVAL+ IMAQ+GS+VPA A + ++DGI+TR GA+D+
Sbjct: 4 DSERVMIITGPNMGGKSSYIKQVALVVIMAQIGSYVPAEEATIGIVDGIFTRQRRGAADN 63
Query: 848 IQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCM 907
I +GRSTF+EEL + + I++ T +SLVI+DELGRGTSTHDG+AIAYATL+Y + K +
Sbjct: 64 IYKGRSTFMEELTDTAEIIQKATQRSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSL 123
Query: 908 VLFVTHYPKIADIKTKFTGSVGTYHVSYLT----SHKVMGPMDSKSDQDVTYLYKVVPGV 963
LFVTHYP + +++ ++ VG YH+ +L S + G M+ D VT+LY++ G+
Sbjct: 124 TLFVTHYPPVCELEKRYPEQVGNYHMGFLVNEDGSKQDSGDMEQMPDS-VTFLYQITRGI 182
Query: 964 SESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
+ S+G VA+LA +P + +A + +LE V+ R
Sbjct: 183 AARSYGLNVAKLADVPREILQKAAHKSKELEGLVNLR 219
>ZFIN|ZDB-GENE-020905-3 [details] [associations]
symbol:msh6 "mutS homolog 6 (E. coli)" species:7955
"Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0032137
"guanine/thymine mispair binding" evidence=IGI] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0008630 "intrinsic apoptotic signaling pathway in
response to DNA damage" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0016446 "somatic hypermutation
of immunoglobulin genes" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0045190 "isotype switching" evidence=IBA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IMP] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 Pfam:PF00855 ZFIN:ZDB-GENE-020905-3 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 GO:GO:0003684 GO:GO:0045190
GO:GO:0007131 GO:GO:0000228 InterPro:IPR000313 PROSITE:PS50812
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 GO:GO:0016446
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 HSSP:P23909 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
HOVERGEN:HBG000101 EMBL:AF412834 IPI:IPI00513357 UniGene:Dr.4108
ProteinModelPortal:Q90XA6 SMR:Q90XA6 STRING:Q90XA6
InParanoid:Q90XA6 ArrayExpress:Q90XA6 Uniprot:Q90XA6
Length = 1369
Score = 557 (201.1 bits), Expect = 3.1e-50, P = 3.1e-50
Identities = 185/640 (28%), Positives = 298/640 (46%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GAS + M L TL LE+L+N+S G GTLL ++ T +G RLL++W+
Sbjct: 722 GASCFFAKTNQRMVLDGVTLANLEILQNSSTGGPEGTLLERLDTCCTPFGKRLLKQWICA 781
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSL- 509
PLC+ + I RLDA+ ++ MG+ + V +K D+ + + + S+ T L
Sbjct: 782 PLCNPSSIGDRLDALEDL---MGAPSQTSEVTDLLKKLPDLERLLSKIH----SMGTPLK 834
Query: 510 GRS-PDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSAL 568
G+ PD R I ++ IA A L K ++++ E V + L S L
Sbjct: 835 GQDHPD-SRAI--LYEEVVYSKRKIADFLAALEGFKVMKEIV---SIMEPV-GEGLKSKL 887
Query: 569 LKRLIL--TASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAVQS 625
L++++L T + + + L + Q +I F E +A ++
Sbjct: 888 LRQVVLLKTENEDGLFPDLSPELKRWDTAFDHQKARTTGVITPKAGFDPEYDQALNGIKE 947
Query: 626 AKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFK---VPLNWAKVNSTKKTI-R 681
+ +L ++ +K+LG +NL + + +E+P + +P + +V STKK R
Sbjct: 948 CERDLQDYLDRQKKRLGCKNLSYWGTGRNRYQLEVPESVSERSLPEEY-EVRSTKKGWKR 1006
Query: 682 YHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXX 741
Y + ++ +L ++ + F Y ++
Sbjct: 1007 YSTKDIERMFSELQSWEDKRDAALKDCMRRLFYNFDKNYKDWQTAVECMAVLDVLLSMCR 1066
Query: 742 XSRNKN--FVRPVFV---D-DHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHA---ER 791
S++ + RP D + + + RHP V T D+F+PND + E
Sbjct: 1067 YSQSADGSMARPEMALPGDGSYSAPFLDLRGSRHPCVTKTFFGDDFIPNDIFIGCPGDEE 1126
Query: 792 EY---------CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
E C ++TGPNMGGKS +RQ L+ I+AQ+G +VPA S L +D ++TR+
Sbjct: 1127 EAQDDAKALAPCVLVTGPNMGGKSTLMRQCGLVVILAQLGCYVPAESLRLTPVDRVFTRL 1186
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
GASD I G STF EL+E + IL + T SLV++DELGRGT+T+DG AIA A + L E
Sbjct: 1187 GASDRIMSGESTFFVELSETASILLHATNHSLVLLDELGRGTATYDGTAIASAVVKELSE 1246
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962
C LF THY + + + +V H++ + ++ P S + +T+LYK + G
Sbjct: 1247 KICCRTLFSTHYHSLVEDHVQ-DPAVRLGHMACMVENECEDP----SQETITFLYKFIRG 1301
Query: 963 VSESSFGFKVAQLAQLPPSCISRATVIAAKLE-AEVSSRV 1001
S+GF A+LA +P I A E + VS R+
Sbjct: 1302 ACPKSYGFNAARLANIPEDVIQSGHKKARDFERSTVSLRI 1341
Score = 197 (74.4 bits), Expect = 2.4e-11, P = 2.4e-11
Identities = 143/642 (22%), Positives = 257/642 (40%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ +LK++ D +L +VG + + DA + L + + + + P
Sbjct: 406 TPGMRRWWQLKSEMFDTVLFYKVGKFYELYHMDAVIGVNELNL-TFMKGTWAHSGFPEIG 464
Query: 150 LNVHVRRLVNAGFKVGVVKQTETA-AIKAHGPGKAGP--FGRGLSALYTKA-TLXXXXXX 205
LV G+KV V+QTET ++A A P F + + + T
Sbjct: 465 FGRFSDVLVQKGYKVARVEQTETPDMMEARCKKLARPTKFDKVVKREVCRIITRGTQTYS 524
Query: 206 XXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDG 265
S YL+ + + K G G GV ++ S G G+F D
Sbjct: 525 VLDGAPSETQSKYLLSIKE------KSEEDSTGHGHIY--GVCFIDTSVGRFHIGQFQDD 576
Query: 266 --FLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGAL 323
R G P S +T K+ A + + S+ F
Sbjct: 577 RHCSRLRTLVAHYSPAQVIFEKGNP-SIETLKIFKAIVASSLQEGLNAGSQ--FWDAQKT 633
Query: 324 AEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP----DLAVQALALTIRHL 379
+V++ E+ +++ +N+ +++ P S + + P +LA+ AL + +L
Sbjct: 634 LKVLA-EEDYFKESKDDNKKESVLPPALKAMTSECDALSLTPKTGYELALSALGGCMFYL 692
Query: 380 KQ-------FGL-----------ERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSN 421
K+ F + E GAS + M L TL LE+L+N+S
Sbjct: 693 KKCLVDQELFSMGNFEEYVPVDVEMEQAGGASCFFAKTNQRMVLDGVTLANLEILQNSST 752
Query: 422 GSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESV 481
G GTLL ++ T +G RLL++W+ PLC+ + I RLDA+ ++ MG+ + V
Sbjct: 753 GGPEGTLLERLDTCCTPFGKRLLKQWICAPLCNPSSIGDRLDALEDL---MGAPSQTSEV 809
Query: 482 GQHDEKNSDVTIVEPQFYYILSSVLTSL-GRS-PDIQRGITRIFHRTATPSEFIAVMQAI 539
+K D+ + + + S+ T L G+ PD R I ++ IA A
Sbjct: 810 TDLLKKLPDLERLLSKIH----SMGTPLKGQDHPD-SRAI--LYEEVVYSKRKIADFLAA 862
Query: 540 LYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLIL--TASSPAVIGKAAKLLSTVNKEAA 597
L K ++++ E V + L S LL++++L T + + + L +
Sbjct: 863 LEGFKVMKEIV---SIMEPV-GEGLKSKLLRQVVLLKTENEDGLFPDLSPELKRWDTAFD 918
Query: 598 DQGDLLNLMIISNGQFS-EVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITH 656
Q +I F E +A ++ + +L ++ +K+LG +NL + +
Sbjct: 919 HQKARTTGVITPKAGFDPEYDQALNGIKECERDLQDYLDRQKKRLGCKNLSYWGTGRNRY 978
Query: 657 LIELPANFK---VPLNWAKVNSTKKTI-RYHSPEVLTALDQL 694
+E+P + +P + +V STKK RY + ++ +L
Sbjct: 979 QLEVPESVSERSLPEEY-EVRSTKKGWKRYSTKDIERMFSEL 1019
>WB|WBGene00003422 [details] [associations]
symbol:msh-6 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0032301 "MutSalpha complex" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 497 (180.0 bits), Expect = 5.0e-49, Sum P(2) = 5.0e-49
Identities = 170/612 (27%), Positives = 278/612 (45%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ L L+ L ++ N + S +L +++N T +G RLLR W+ P CD + R
Sbjct: 571 LILDGTALENLNIVPNGRD-SHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQ 629
Query: 463 DAVSE-IAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITR 521
A+ ++ S+ T+ + +K D+ + + + I + + PD R I
Sbjct: 630 KAIKWLVSPDASSFMTTATATL--KKIPDLDRLLQKIHTIGLKYRSE--KHPD-SRAI-- 682
Query: 522 IFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAV 581
F T + IA + A + K +L EY KV + LL L+
Sbjct: 683 FFDTIKTNQKKIAELLAAIDGFKLCNKLR--KEYI-KVQKEGEGCELLDELLGNEQEMEE 739
Query: 582 IGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641
+ + + + D ++ + G E A V+ A EL+ + K+
Sbjct: 740 VDENIYFFEKMFDRSTAMKD--GKIVPNAGCDEEYDEALNRVKEALNELNDYKDSVAKKY 797
Query: 642 GMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPE---VLTALDQLALAN 698
+++F+ + +L+E+P N KV ++ + K IRY +P+ ++ ALD A+
Sbjct: 798 SC-SIKFVDSGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTPDSEQLVAALD--AVEK 854
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNF--VRPVF-VD 755
E+ + A F ++FG + +++ F P F +
Sbjct: 855 EKSKLGDDATRRVF-EQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFN 913
Query: 756 DHEPVQIHICSGRHPVL------DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYI 809
+P I + G HP L + +F+ N T + A ++TGPNMGGKS +
Sbjct: 914 ATDPYLI-VDKGVHPCLALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLM 972
Query: 810 RQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869
RQ A++ I+A +GS VPA S L +D I+TR+GA+D I G STF EL E +L+N
Sbjct: 973 RQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNA 1032
Query: 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVG 929
T SL++VDELGRGTST DG AIA A L + + C F THY I D FT
Sbjct: 1033 TKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICD---SFTN--- 1086
Query: 930 TYHVSYLTSH-KVMGPMDSKSD---QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
H + +H K + ++ D +DVT+LY++ G+ S+GF A+LA + +
Sbjct: 1087 --HPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRN 1144
Query: 986 ATVIAAKLEAEV 997
A + + K + +
Sbjct: 1145 AYLESNKFASNL 1156
Score = 101 (40.6 bits), Expect = 5.0e-49, Sum P(2) = 5.0e-49
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASI 145
++K TP +Q +K+++ D +L+ +VG + + DA + L I A + ++ A
Sbjct: 247 HQKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALNI-AFMRGSYAHAGF 305
Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTET 172
P + +L+N G+KV ++QTET
Sbjct: 306 PEHAASKFADQLMNHGYKVARIEQTET 332
>UNIPROTKB|Q9N3T8 [details] [associations]
symbol:msh-6 "Protein MSH-6" species:6239 "Caenorhabditis
elegans" [GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0008630 "intrinsic apoptotic signaling pathway in response to
DNA damage" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0008630 GO:GO:0003684 GO:GO:0007131 GO:GO:0000228
GO:GO:0043570 GO:GO:0045910 GO:GO:0008094 EMBL:FO081580
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 HSSP:Q56215 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000243127 KO:K08737
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 GeneTree:ENSGT00550000075024 RefSeq:NP_491163.1
ProteinModelPortal:Q9N3T8 SMR:Q9N3T8 IntAct:Q9N3T8 MINT:MINT-227678
STRING:Q9N3T8 PaxDb:Q9N3T8 EnsemblMetazoa:Y47G6A.11 GeneID:171914
KEGG:cel:CELE_Y47G6A.11 UCSC:Y47G6A.11 CTD:171914
WormBase:Y47G6A.11 InParanoid:Q9N3T8 OMA:RDHIMAG NextBio:873221
Uniprot:Q9N3T8
Length = 1186
Score = 497 (180.0 bits), Expect = 5.0e-49, Sum P(2) = 5.0e-49
Identities = 170/612 (27%), Positives = 278/612 (45%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ L L+ L ++ N + S +L +++N T +G RLLR W+ P CD + R
Sbjct: 571 LILDGTALENLNIVPNGRD-SHLTSLYYVINKCSTPFGRRLLRSWLLQPTCDPKKLEQRQ 629
Query: 463 DAVSE-IAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITR 521
A+ ++ S+ T+ + +K D+ + + + I + + PD R I
Sbjct: 630 KAIKWLVSPDASSFMTTATATL--KKIPDLDRLLQKIHTIGLKYRSE--KHPD-SRAI-- 682
Query: 522 IFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAV 581
F T + IA + A + K +L EY KV + LL L+
Sbjct: 683 FFDTIKTNQKKIAELLAAIDGFKLCNKLR--KEYI-KVQKEGEGCELLDELLGNEQEMEE 739
Query: 582 IGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641
+ + + + D ++ + G E A V+ A EL+ + K+
Sbjct: 740 VDENIYFFEKMFDRSTAMKD--GKIVPNAGCDEEYDEALNRVKEALNELNDYKDSVAKKY 797
Query: 642 GMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPE---VLTALDQLALAN 698
+++F+ + +L+E+P N KV ++ + K IRY +P+ ++ ALD A+
Sbjct: 798 SC-SIKFVDSGKVKYLLEMPENTKVSSSFELKSRRKGFIRYSTPDSEQLVAALD--AVEK 854
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNF--VRPVF-VD 755
E+ + A F ++FG + +++ F P F +
Sbjct: 855 EKSKLGDDATRRVF-EQFGHKNPIWLETVKLVSSFDVLTSLALFAKSSPFEMCMPEFDFN 913
Query: 756 DHEPVQIHICSGRHPVL------DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYI 809
+P I + G HP L + +F+ N T + A ++TGPNMGGKS +
Sbjct: 914 ATDPYLI-VDKGVHPCLALQSRNEVTQTTSFIANSTTMGASEAAVMLLTGPNMGGKSTLM 972
Query: 810 RQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869
RQ A++ I+A +GS VPA S L +D I+TR+GA+D I G STF EL E +L+N
Sbjct: 973 RQTAVLAILAHIGSMVPAFSMRLTPIDRIFTRIGANDRIMCGESTFFIELKETDIMLKNA 1032
Query: 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVG 929
T SL++VDELGRGTST DG AIA A L + + C F THY I D FT
Sbjct: 1033 TKHSLLLVDELGRGTSTFDGTAIASAVLQKISDDLACRTFFSTHYHSICD---SFTN--- 1086
Query: 930 TYHVSYLTSH-KVMGPMDSKSD---QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
H + +H K + ++ D +DVT+LY++ G+ S+GF A+LA + +
Sbjct: 1087 --HPNVRLAHMKCVVDKENNEDPTMEDVTFLYELESGICPKSYGFYAAKLAGIDHQVVRN 1144
Query: 986 ATVIAAKLEAEV 997
A + + K + +
Sbjct: 1145 AYLESNKFASNL 1156
Score = 101 (40.6 bits), Expect = 5.0e-49, Sum P(2) = 5.0e-49
Identities = 25/87 (28%), Positives = 47/87 (54%)
Query: 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASI 145
++K TP +Q +K+++ D +L+ +VG + + DA + L I A + ++ A
Sbjct: 247 HQKQTPGHRQWWTMKSQHFDTILLFKVGKFYETYHMDAVEVVRALNI-AFMRGSYAHAGF 305
Query: 146 PTFRLNVHVRRLVNAGFKVGVVKQTET 172
P + +L+N G+KV ++QTET
Sbjct: 306 PEHAASKFADQLMNHGYKVARIEQTET 332
>POMBASE|SPBC19G7.01c [details] [associations]
symbol:msh2 "MutS protein homolog 2" species:4896
"Schizosaccharomyces pombe" [GO:0000228 "nuclear chromosome"
evidence=ISO] [GO:0000400 "four-way junction DNA binding"
evidence=ISO] [GO:0000403 "Y-form DNA binding" evidence=ISO]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=ISO] [GO:0005524 "ATP binding" evidence=ISO] [GO:0005634
"nucleus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006298 "mismatch repair" evidence=IGI;IMP] [GO:0007534 "gene
conversion at mating-type locus" evidence=IMP] [GO:0016887 "ATPase
activity" evidence=ISO] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0051276 "chromosome organization" evidence=IMP] [GO:0000404
"loop DNA binding" evidence=ISO] [GO:0032135 "DNA insertion or
deletion binding" evidence=ISO] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO] [GO:0032138 "single base insertion
or deletion binding" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 PomBase:SPBC19G7.01c
GO:GO:0005829 GO:GO:0005524 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0016887 GO:GO:0006298 GO:GO:0030983 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032301 HOGENOM:HOG000196498 KO:K08735
GO:GO:0032302 GO:GO:0000406 OrthoDB:EOG4S7NZ5 EMBL:AJ006948
PIR:T43699 RefSeq:XP_001713136.1 ProteinModelPortal:O74773
STRING:O74773 EnsemblFungi:SPBC19G7.01c.1 GeneID:2540695
KEGG:spo:SPBC19G7.01c OMA:HINERLD NextBio:20801818 GO:GO:0007534
Uniprot:O74773
Length = 982
Score = 490 (177.5 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 122/307 (39%), Positives = 178/307 (57%)
Query: 747 NF--VRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNL-HAEREYCQIITGPNMG 803
NF +R ++H ++++ RHP L+ F+PND NL H E IITGPNMG
Sbjct: 668 NFEEIRRTLENNH-CARLYLKQARHPCLEAQDDVKFIPNDVNLEHGSSELL-IITGPNMG 725
Query: 804 GKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEAS 863
GKS YIRQV +I +MAQ+G VP A+L ++D I R+GASDS +G STF+ E+ E +
Sbjct: 726 GKSTYIRQVGVITVMAQIGCPVPCEVADLDIIDAILARVGASDSQLKGISTFMAEMLETA 785
Query: 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923
ILR T +SL+I+DELGRGTST DG +A+A ++++ C LF THY ++ + +
Sbjct: 786 TILRAATPRSLIIIDELGRGTSTTDGFGLAWAITEHIVTQIGCFCLFATHYHEMTKLSEE 845
Query: 924 FTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
T +V HV T++ +G +SK DV LY V G S+ SFG VA+LA PP I
Sbjct: 846 IT-TVKNLHV---TAY--VGDSESK---DVALLYNVCEGASDRSFGIHVAKLAHFPPKII 896
Query: 984 SRATVIAAKLEAEVSSR---VQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEAS 1040
A+ AA+LEAE S Q +K++ + + D ++ + N V PE ++
Sbjct: 897 EMASNKAAELEAEDSGAQGDTQEVKSKKEGMAIVRDIMRQWRSN--VKPEMTQQQMMDQF 954
Query: 1041 EDLISAY 1047
+ +I ++
Sbjct: 955 QKVIGSF 961
Score = 104 (41.7 bits), Expect = 5.4e-49, Sum P(2) = 5.4e-49
Identities = 25/69 (36%), Positives = 35/69 (50%)
Query: 403 MTLSANTLQQLEVLRN-NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISAR 461
M L ++ L +L N N + +L ++NH T G+R LRRW+ PL D I R
Sbjct: 314 MRLDIAAVRSLNLLPPPNGNAHKTMSLYGLLNHCRTAMGARNLRRWIVQPLLDAKSIERR 373
Query: 462 LDAVSEIAE 470
D VS + E
Sbjct: 374 HDLVSALVE 382
Score = 45 (20.9 bits), Expect = 8.6e-43, Sum P(2) = 8.6e-43
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 630 LDSLINMCRKQLGMRNL 646
L L+N CR +G RNL
Sbjct: 340 LYGLLNHCRTAMGARNL 356
>UNIPROTKB|Q23K54 [details] [associations]
symbol:TTHERM_00194810 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 KO:K08737 InterPro:IPR017261
InterPro:IPR015536 PANTHER:PTHR11361:SF31 PIRSF:PIRSF037677
EMBL:GG662673 ProtClustDB:CLSZ2445539 RefSeq:XP_001017234.1
UniGene:Tth.3690 ProteinModelPortal:Q23K54 EnsemblProtists:EAR96989
GeneID:7830572 KEGG:tet:TTHERM_00194810 Uniprot:Q23K54
Length = 1232
Score = 434 (157.8 bits), Expect = 4.1e-48, Sum P(4) = 4.1e-48
Identities = 127/433 (29%), Positives = 218/433 (50%)
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF----KVPLNWAKVN 674
A +AVQ+ +++L + + ++Q+ + +++ G+ + +E+ + K P N+ +
Sbjct: 811 ATEAVQNVEKKLQNYLVQIQQQMKDKTIKY----GLRYELEINEDLVKGNKKPKNFDFTS 866
Query: 675 STKKTIRYHSPEV---LTALDQLA-LANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXX 730
K R+ + E+ + LD+ + +EL CR + F + + +
Sbjct: 867 KAGKYQRFQTKELRELIAELDEAEDVQKKELKEFCRFIFKEFYESYKTWDTLINILAELD 926
Query: 731 XXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQ--IHICSGRHPVLDTILLDNFVPNDTNLH 788
+ RP E I + SGRHP L ++ + NF+PND L
Sbjct: 927 CLISLSRVSFLLADGV-MSRPELYPASEKYVPFIELTSGRHPCLASMGV-NFIPNDIYLG 984
Query: 789 AEREYCQ--------IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYT 840
++ Q ++TGPNMGGKS +R ++ I+AQ+G +VPA S + ++D I+T
Sbjct: 985 DIKQTGQFEDNKNLILLTGPNMGGKSTTLRMACVMAILAQIGCYVPAKSLRMTLVDRIFT 1044
Query: 841 RMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900
R+GASD + G+STF E+ E S ++ + SL+I+DELGRGTST DGVAIAY+ + YL
Sbjct: 1045 RIGASDKLMDGKSTFFIEMEETSNAVKQGSKHSLIIMDELGRGTSTFDGVAIAYSIVRYL 1104
Query: 901 LEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVV 960
+E+ + LF THY + D + + + YH++ H +D K + V +LY++
Sbjct: 1105 VENLQSRCLFATHYHVLLD-EFRHYPQIAYYHMA---CH-----VDEKRSK-VIFLYRLK 1154
Query: 961 PGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVS-SRVQNRSAKRDLLVKLSDQEQ 1019
G SSFG VA++ + + I A A + E ++ N + + +L+K + QE
Sbjct: 1155 AGECSSSFGINVAKVVGISDNLIEIAKQKAKEFEENLNIQHAYNTNKRFGILMK-AIQEY 1213
Query: 1020 EAQENMPVSPESF 1032
+ EN+ E F
Sbjct: 1214 DRDENLEQIIEQF 1226
Score = 107 (42.7 bits), Expect = 4.1e-48, Sum P(4) = 4.1e-48
Identities = 36/116 (31%), Positives = 58/116 (50%)
Query: 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIP 146
K++TP+ +Q E+K+ D +L ++G + F EDA + K L + + M P
Sbjct: 263 KQFTPVMRQYWEIKSTNFDKILFFKLGKFYELFYEDALITHKELDL--NWMGKKMHTGFP 320
Query: 147 TFRLNVHVRRLVNAGFKVGVVKQTETAA-IKAH-GPGKAGP--FGRGLSALYTKAT 198
L+ +L++ G+KV V +QTET +K K+GP R L + TK T
Sbjct: 321 EKALDKMASKLISLGYKVAVAEQTETPEQMKQRLMREKSGPKCVSRELVQVMTKGT 376
Score = 100 (40.3 bits), Expect = 4.1e-48, Sum P(4) = 4.1e-48
Identities = 27/77 (35%), Positives = 41/77 (53%)
Query: 403 MTLSANTLQQLEVLRNNSNG-----SEY------GTLLHIMNHTLTIYGSRLLRRWVTHP 451
M L + +LQ LE+L ++S Y G+LL +N T T +G R+L+ W+ P
Sbjct: 550 MILDSQSLQHLEILDSSSGPVSTQKENYKLHFDDGSLLGYINKTKTPFGYRMLKNWICAP 609
Query: 452 LCDRNLISARLDAVSEI 468
L D N I R DA+ ++
Sbjct: 610 LMDINKIYDRYDAIEDL 626
Score = 44 (20.5 bits), Expect = 4.1e-48, Sum P(4) = 4.1e-48
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 241 FDVRLGVVAVEISTGDVVYGEFND 264
F + G++ VE ST + ND
Sbjct: 396 FQTKFGIIIVESSTNVITVAYLND 419
>FB|FBgn0036486 [details] [associations]
symbol:Msh6 "Msh6" species:7227 "Drosophila melanogaster"
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006301 "postreplication
repair" evidence=NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IMP] [GO:0032138
"single base insertion or deletion binding" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0009411 "response to UV" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009411 GO:GO:0008630 EMBL:AE014296 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
Gene3D:3.40.1170.10 SUPFAM:SSF55271 KO:K08737 OMA:YHMDAVI
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:BT050543 RefSeq:NP_648755.1 UniGene:Dm.966
ProteinModelPortal:Q9VUM0 SMR:Q9VUM0 DIP:DIP-23712N
MINT:MINT-323400 STRING:Q9VUM0 PaxDb:Q9VUM0
EnsemblMetazoa:FBtr0075646 GeneID:39654 KEGG:dme:Dmel_CG7003
UCSC:CG7003-RA CTD:2956 FlyBase:FBgn0036486
GeneTree:ENSGT00550000075024 InParanoid:Q9VUM0 OrthoDB:EOG4PNVXR
PhylomeDB:Q9VUM0 GenomeRNAi:39654 NextBio:814711 Bgee:Q9VUM0
GermOnline:CG7003 Uniprot:Q9VUM0
Length = 1190
Score = 487 (176.5 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 159/586 (27%), Positives = 263/586 (44%)
Query: 422 GSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE---SMGSYRTS 478
G E+ +LL ++H T +G RLL W+ P CD ++I R DA+ E+ + R
Sbjct: 593 GEEH-SLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVRAL 651
Query: 479 ESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQA 538
+ E+N Q + + + + PD R I +F + + A
Sbjct: 652 LAPMPDFERNL------AQIHLFGNKQIKQMDH-PD-SRAI--LFEEKLYNKQKLQGFMA 701
Query: 539 ILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAAD 598
+L L +L + + KT LLKR+ S +K L A D
Sbjct: 702 VLKGFNDLTKLPT--MFHQ---CKT---TLLKRITQLPESGGSFPDLSKELQYF-ATAFD 752
Query: 599 QGDLLNLMIISN--GQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITH 656
+I+ G +E A ++ ++ L + + + G R + + +
Sbjct: 753 HDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQERHFGCR-ITYFGSDKKRY 811
Query: 657 LIELPANFKVPLNWA-----KVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDS 711
+++P + N + + K + RY + E L + A + +V +
Sbjct: 812 QLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKDMQHAEDTRNMVLKDLARR 871
Query: 712 FLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVR-PVFVDDHEPVQIHICSGRHP 770
++F +Y ++ + + + P V D + I + G HP
Sbjct: 872 LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGYHP 931
Query: 771 VLDTILLDNFVPNDTNLHAEREY-CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS 829
+ ++PN L E ++TGPNMGGKS +R+V L+ IMAQ+G+ +PA+S
Sbjct: 932 CANA---STYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAAS 988
Query: 830 AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDG 889
L ++D I+TR+GA D I G STFL ELNE S IL++ T SLV++DELGRGT+T+DG
Sbjct: 989 CRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDG 1048
Query: 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKS 949
AIA + +++L + KC LF THY + D + H++ + ++ +
Sbjct: 1049 TAIAASVVNFLA-NLKCRTLFSTHYHNLIDFFHN-DKRITLGHMACMVENEDNA---DPT 1103
Query: 950 DQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ VT+LYK G S+GF A+LA +P I RA ++ K+EA
Sbjct: 1104 QETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEA 1149
Score = 98 (39.6 bits), Expect = 1.4e-47, Sum P(2) = 1.4e-47
Identities = 42/169 (24%), Positives = 68/169 (40%)
Query: 99 LKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLV 158
LK+ D +L +VG + + DA++ LG + ++ F + P + LV
Sbjct: 271 LKSDNYDCVLFFKVGKFYELYHMDADVGVNELG-FTYMRGEFAHSGFPEISFDKMSTILV 329
Query: 159 NAGFKVGVVKQTETAAIKAHGPG--KAGPFGRGLSALYTKATLXXXXXXXXXXXXXXXXS 216
+ GFKV V+QTET + KA F + ++ + T
Sbjct: 330 DRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQ 389
Query: 217 -NYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFND 264
NY++ +V+ D +G R GV ++ S GD GEF D
Sbjct: 390 PNYMLAIVEKD------------EGTCSRYGVCFIDTSIGDFHLGEFED 426
>TAIR|locus:2095097 [details] [associations]
symbol:MSH2 "AT3G18524" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=ISS;IDA] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006200 "ATP catabolic
process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS;IMP] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0032302 "MutSbeta complex" evidence=IEA;IBA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IBA] [GO:0005515
"protein binding" evidence=IPI] [GO:0030983 "mismatched DNA
binding" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IMP] [GO:0006290 "pyrimidine dimer repair"
evidence=IMP] [GO:0000724 "double-strand break repair via
homologous recombination" evidence=RCA] [GO:0006270 "DNA
replication initiation" evidence=RCA] [GO:0006275 "regulation of
DNA replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006346 "methylation-dependent chromatin
silencing" evidence=RCA] [GO:0008283 "cell proliferation"
evidence=RCA] [GO:0009909 "regulation of flower development"
evidence=RCA] [GO:0016246 "RNA interference" evidence=RCA]
[GO:0016570 "histone modification" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0031048 "chromatin silencing by
small RNA" evidence=RCA] [GO:0031507 "heterochromatin assembly"
evidence=RCA] [GO:0045787 "positive regulation of cell cycle"
evidence=RCA] [GO:0048449 "floral organ formation" evidence=RCA]
[GO:0048451 "petal formation" evidence=RCA] [GO:0048453 "sepal
formation" evidence=RCA] [GO:0051567 "histone H3-K9 methylation"
evidence=RCA] [GO:0051726 "regulation of cell cycle" evidence=RCA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005886 GO:GO:0005524 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0003684 EMBL:AB026658 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 EMBL:AP001303
GO:GO:0008094 GO:GO:0006290 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 EMBL:AF026549 EMBL:AF109243
EMBL:AF002706 EMBL:AF003005 EMBL:U87911 IPI:IPI00526204
RefSeq:NP_566804.3 UniGene:At.10475 ProteinModelPortal:O24617
SMR:O24617 STRING:O24617 PaxDb:O24617 PRIDE:O24617
EnsemblPlants:AT3G18524.1 GeneID:821383 KEGG:ath:AT3G18524
TAIR:At3g18524 HOGENOM:HOG000196498 InParanoid:O24617 KO:K08735
OMA:WAISEHI PhylomeDB:O24617 ProtClustDB:CLSN2680872
Genevestigator:O24617 GermOnline:AT3G18524 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 Uniprot:O24617
Length = 937
Score = 464 (168.4 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 106/264 (40%), Positives = 157/264 (59%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
+ RP + + I + RHP ++ NF+PND L + + QI+TGPNMGGKS
Sbjct: 616 YCRPE-ITSSDAGDIVLEGSRHPCVEAQDWVNFIPNDCRLMRGKSWFQIVTGPNMGGKST 674
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
+IRQV +I +MAQVGSFVP A + + D I+ R+GA D +G STF++E+ E + IL+
Sbjct: 675 FIRQVGVIVLMAQVGSFVPCDKASISIRDCIFARVGAGDCQLRGVSTFMQEMLETASILK 734
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ +SL+I+DELGRGTST+DG +A+A ++L++ K+ LF TH+ ++ + +
Sbjct: 735 GASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVQVKRAPTLFATHFHELTAL-AQANSE 793
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V V H V +D++S + +T LYKV PG + SFG VA+ A P S ++ A
Sbjct: 794 VSGNTVGVANFH-VSAHIDTES-RKLTMLYKVEPGACDQSFGIHVAEFANFPESVVALAR 851
Query: 988 VIAAKLEA-EVSSRVQNR--SAKR 1008
AA+LE SS + N S KR
Sbjct: 852 EKAAELEDFSPSSMIINNEESGKR 875
Score = 116 (45.9 bits), Expect = 1.9e-47, Sum P(2) = 1.9e-47
Identities = 30/90 (33%), Positives = 46/90 (51%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTI-YGSRLLRRWVTHPLCDRNLISAR 461
M L + ++ L V+ + ++ ++ +L +MN T T G RLL W+ PL D N I R
Sbjct: 294 MRLDSAAMRALNVMESKTDANKNFSLFGLMNRTCTAGMGKRLLHMWLKQPLVDLNEIKTR 353
Query: 462 LDAVSEIAESMGSYRTSESVGQHDEKNSDV 491
LD V E G + + QH ++ SDV
Sbjct: 354 LDIVQCFVEEAG---LRQDLRQHLKRISDV 380
Score = 40 (19.1 bits), Expect = 1.8e-39, Sum P(2) = 1.8e-39
Identities = 22/108 (20%), Positives = 41/108 (37%)
Query: 340 NNEDQNMDVPEQGNHRSAIEGIMNM-PDLAVQALALTIRHLKQF----GLERIMCLGASF 394
N E+QN +PE +G ++ L A+ K + G + +
Sbjct: 4 NFEEQNK-LPELKLDAKQAQGFLSFYKTLPNDTRAVRFFDRKDYYTAHGENSVFIAKTYY 62
Query: 395 RSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIY-GS 441
+ + ++ +N L + + RN LL +HT+ +Y GS
Sbjct: 63 HTTTALRQLGSGSNALSSVSISRNMFETIARDLLLERNDHTVELYEGS 110
>UNIPROTKB|F1NV33 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00821163 Ensembl:ENSGALT00000014573 ArrayExpress:F1NV33
Uniprot:F1NV33
Length = 861
Score = 479 (173.7 bits), Expect = 6.2e-47, Sum P(3) = 6.2e-47
Identities = 153/531 (28%), Positives = 250/531 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSAL 568
L R PD+ R + + AT + + QAI +Q L EK + H L
Sbjct: 309 LRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQAL-------EK--HEGAHQML 359
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAVQSAK 627
L + +T + + +K L + + D + N + F + R+ + +
Sbjct: 360 LLAVFITPLND-IHSDFSKFLEMI-ETTLDMDKVENHEFLVKASFDPNLTELREKMNELE 417
Query: 628 EELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL--NWA-KVNSTKKT-I 680
E + +L+ K+LG+ ++++ S S H + + L N K+ T+K +
Sbjct: 418 ESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNMKYKITDTQKNGV 477
Query: 681 RYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEF----GGYYAEFXXXXXXXXXXXXX 736
++ + + L+A+++ + N E A D+ +KE GY
Sbjct: 478 KFTNSK-LSAINEEYIKNRE---EYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAI 533
Query: 737 XXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYC 794
S +VRPV ++ + +I + RHP ++ F+PND ++
Sbjct: 534 VSFAHVSNGAPVPYVRPVILEKGQG-RIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMF 592
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YIRQ +I +MAQ+G FVP +SAE+ ++D I R+GA DS +G ST
Sbjct: 593 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVST 652
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+ E+ E + ILR + SL+I+DELGRGTST+DG +A+A +Y+ +F TH+
Sbjct: 653 FMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHF 712
Query: 915 PKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQ 974
++ + + +V HV+ LTS D +T LY+V GV + SFG VA+
Sbjct: 713 HELTALADQVP-TVNNLHVTALTS-----------DDTLTMLYRVKAGVCDQSFGIHVAE 760
Query: 975 LAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENM 1025
LA P I A A +LE E + + ++ + K +E+E E +
Sbjct: 761 LAAFPKHVIESAREKALELE-EFQDIGRPKESEGEPAAKRCYREREEGEKI 810
Score = 91 (37.1 bits), Expect = 6.2e-47, Sum P(3) = 6.2e-47
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 400 SMEMTLSANTLQQLEVLRNN-SNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLI 458
S M L +Q L + +++ N + +L ++N T G RL+ +W+ PL D+N I
Sbjct: 225 SQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRI 284
Query: 459 SARLDAV 465
RL+ V
Sbjct: 285 EERLNLV 291
Score = 44 (20.5 bits), Expect = 6.2e-47, Sum P(3) = 6.2e-47
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 227 GNVGKIRNGVFGDG-FDVRLGVVAVEISTGD 256
GN+ + +F + + +GVV V++S+ D
Sbjct: 54 GNLAQFEEVLFANNDMSMAIGVVGVKLSSAD 84
>UNIPROTKB|F1NFH4 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0000400 "four-way junction DNA binding"
evidence=IEA] [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0006302
"double-strand break repair" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0007050 "cell cycle arrest"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008340
"determination of adult lifespan" evidence=IEA] [GO:0008584 "male
gonad development" evidence=IEA] [GO:0010165 "response to X-ray"
evidence=IEA] [GO:0010224 "response to UV-B" evidence=IEA]
[GO:0016446 "somatic hypermutation of immunoglobulin genes"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0019237 "centromeric DNA binding" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0030183 "B cell
differentiation" evidence=IEA] [GO:0031573 "intra-S DNA damage
checkpoint" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032142 "single guanine insertion
binding" evidence=IEA] [GO:0032143 "single thymine insertion
binding" evidence=IEA] [GO:0032181 "dinucleotide repeat insertion
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032405 "MutLalpha complex binding" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA] [GO:0043531 "ADP binding" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0045190
"isotype switching" evidence=IEA] [GO:0045910 "negative regulation
of DNA recombination" evidence=IEA] [GO:0051096 "positive
regulation of helicase activity" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006915 GO:GO:0000287 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0016887 GO:GO:0006119 GO:GO:0006298
GO:GO:0019237 GO:GO:0003697 GO:GO:0006302 GO:GO:0010165
GO:GO:0010224 GO:GO:0043570 GO:GO:0045910 GO:GO:0006301
GO:GO:0031573 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0019724 GO:GO:0032137 GO:GO:0032301 OMA:WAISEHI GO:GO:0032302
GeneTree:ENSGT00550000074867 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:AADN02036255
IPI:IPI00601005 Ensembl:ENSGALT00000039639 ArrayExpress:F1NFH4
Uniprot:F1NFH4
Length = 866
Score = 479 (173.7 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 153/531 (28%), Positives = 250/531 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSAL 568
L R PD+ R + + AT + + QAI +Q L EK + H L
Sbjct: 314 LRRFPDLNRLAKKFQRQAATLQDCYRMYQAINQLPNVVQAL-------EK--HEGAHQML 364
Query: 569 LKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAVQSAK 627
L + +T + + +K L + + D + N + F + R+ + +
Sbjct: 365 LLAVFITPLND-IHSDFSKFLEMI-ETTLDMDKVENHEFLVKASFDPNLTELREKMNELE 422
Query: 628 EELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL--NWA-KVNSTKKT-I 680
E + +L+ K+LG+ ++++ S S H + + L N K+ T+K +
Sbjct: 423 ESMQTLLKSAAKELGLEAGKSIKLESNSQFGHHFRITCKEEKVLRNNMKYKITDTQKNGV 482
Query: 681 RYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEF----GGYYAEFXXXXXXXXXXXXX 736
++ + + L+A+++ + N E A D+ +KE GY
Sbjct: 483 KFTNSK-LSAINEEYIKNRE---EYEEAQDAIVKEIINIASGYAEPIQTMNDVIAQLDAI 538
Query: 737 XXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYC 794
S +VRPV ++ + +I + RHP ++ F+PND ++
Sbjct: 539 VSFAHVSNGAPVPYVRPVILEKGQG-RIVLKGARHPCIEVQDEVAFIPNDVTFEKGKQMF 597
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
IITGPNMGGKS YIRQ +I +MAQ+G FVP +SAE+ ++D I R+GA DS +G ST
Sbjct: 598 HIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCNSAEITIVDCILARVGAGDSQLKGVST 657
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+ E+ E + ILR + SL+I+DELGRGTST+DG +A+A +Y+ +F TH+
Sbjct: 658 FMAEMLETASILRTASENSLIIIDELGRGTSTYDGFGLAWAISEYIASKICAFCMFATHF 717
Query: 915 PKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQ 974
++ + + +V HV+ LTS D +T LY+V GV + SFG VA+
Sbjct: 718 HELTALADQVP-TVNNLHVTALTS-----------DDTLTMLYRVKAGVCDQSFGIHVAE 765
Query: 975 LAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQENM 1025
LA P I A A +LE E + + ++ + K +E+E E +
Sbjct: 766 LAAFPKHVIESAREKALELE-EFQDIGRPKESEGEPAAKRCYREREEGEKI 815
Score = 91 (37.1 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 400 SMEMTLSANTLQQLEVLRNN-SNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLI 458
S M L +Q L + +++ N + +L ++N T G RL+ +W+ PL D+N I
Sbjct: 230 SQYMVLDNAAVQALNLFQSSVENANNTQSLAGLLNKCRTPQGQRLVNQWIKQPLMDKNRI 289
Query: 459 SARLDAV 465
RL+ V
Sbjct: 290 EERLNLV 296
Score = 44 (20.5 bits), Expect = 6.6e-47, Sum P(3) = 6.6e-47
Identities = 9/31 (29%), Positives = 18/31 (58%)
Query: 227 GNVGKIRNGVFGDG-FDVRLGVVAVEISTGD 256
GN+ + +F + + +GVV V++S+ D
Sbjct: 59 GNLAQFEEVLFANNDMSMAIGVVGVKLSSAD 89
>SGD|S000005450 [details] [associations]
symbol:MSH2 "Protein that forms heterodimers with Msh3p and
Msh6p that bind to DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0005524 "ATP binding" evidence=IEA;IDA] [GO:0006298 "mismatch
repair" evidence=IEA;IMP] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IPI]
[GO:0032302 "MutSbeta complex" evidence=IEA;IPI] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0036297 "interstrand cross-link
repair" evidence=IGI] [GO:0000735 "removal of nonhomologous ends"
evidence=IGI;IMP] [GO:0000710 "meiotic mismatch repair"
evidence=IMP] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0006312 "mitotic recombination"
evidence=IMP] [GO:0000403 "Y-form DNA binding" evidence=IDA]
[GO:0000404 "loop DNA binding" evidence=IDA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IDA]
[GO:0030466 "chromatin silencing at silent mating-type cassette"
evidence=IGI] [GO:0006311 "meiotic gene conversion" evidence=IMP]
[GO:0032135 "DNA insertion or deletion binding" evidence=IDA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IMP;IDA] [GO:0006310 "DNA recombination" evidence=IMP]
[GO:0000400 "four-way junction DNA binding" evidence=IDA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
SGD:S000005450 GO:GO:0005524 EMBL:BK006948 GO:GO:0003684
GO:GO:0030466 EMBL:X83121 GO:GO:0030983 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0006301 GO:GO:0008094 GO:GO:0036297
GO:GO:0006311 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0000710 GO:GO:0032301 HOGENOM:HOG000196498
KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GeneTree:ENSGT00550000074867 OrthoDB:EOG4S7NZ5 GO:GO:0000735
EMBL:M84170 EMBL:Z74832 PIR:S57379 RefSeq:NP_014551.1
ProteinModelPortal:P25847 SMR:P25847 DIP:DIP-2415N IntAct:P25847
MINT:MINT-631153 STRING:P25847 PaxDb:P25847 PeptideAtlas:P25847
EnsemblFungi:YOL090W GeneID:854063 KEGG:sce:YOL090W CYGD:YOL090w
NextBio:975668 Genevestigator:P25847 GermOnline:YOL090W
Uniprot:P25847
Length = 964
Score = 491 (177.9 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 110/272 (40%), Positives = 158/272 (58%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
++RP + H+ S RHPVL+ +F+ ND L + + IITGPNMGGKS
Sbjct: 637 YIRPKLHPMDSERRTHLISSRHPVLEMQDDISFISNDVTLESGKGDFLIITGPNMGGKST 696
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQV +I +MAQ+G FVP AE+ ++D I R+GA DS +G STF+ E+ E + IL+
Sbjct: 697 YIRQVGVISLMAQIGCFVPCEEAEIAIVDAILCRVGAGDSQLKGVSTFMVEILETASILK 756
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
N + SL+IVDELGRGTST+DG +A+A +++ C LF TH+ ++ ++ K +
Sbjct: 757 NASKNSLIIVDELGRGTSTYDGFGLAWAIAEHIASKIGCFALFATHFHELTELSEKLP-N 815
Query: 928 VGTYHVSYLTSHKVMGPMDSK-SDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
V HV +H + K D+D+T LYKV PG+S+ SFG VA++ Q P + A
Sbjct: 816 VKNMHV---VAHIEKNLKEQKHDDEDITLLYKVEPGISDQSFGIHVAEVVQFPEKIVKMA 872
Query: 987 TVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQE 1018
A +L+ + N K+ KLS QE
Sbjct: 873 KRKANELD---DLKTNNEDLKK---AKLSLQE 898
Score = 75 (31.5 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 421 NGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESM 472
N + +L ++NH T G RLL W+ PL + + I+ R D V + + +
Sbjct: 331 NSGKVTSLFQLLNHCKTNAGVRLLNEWLKQPLTNIDEINKRHDLVDYLIDQI 382
Score = 44 (20.5 bits), Expect = 3.9e-46, Sum P(3) = 3.9e-46
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 531 EFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLI-LTASSPAVIGKAAKLL 589
E V I ++ KQL+ + + +K K SAL++ +I +T + V K + +L
Sbjct: 559 ELSTVKAGIFFSTKQLKSIANETNILQKEYDKQ-QSALVREIINITLTYTPVFEKLSLVL 617
Query: 590 S 590
+
Sbjct: 618 A 618
Score = 37 (18.1 bits), Expect = 4.1e-42, Sum P(2) = 4.1e-42
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 630 LDSLINMCRKQLGMRNLEFMSVSGITHLIEL 660
L L+N C+ G+R L +T++ E+
Sbjct: 338 LFQLLNHCKTNAGVRLLNEWLKQPLTNIDEI 368
>UNIPROTKB|Q7RQK0 [details] [associations]
symbol:PY01096 "MutS homolog 2-related" species:73239
"Plasmodium yoelii yoelii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01000289 RefSeq:XP_728672.1
ProteinModelPortal:Q7RQK0 STRING:Q7RQK0 GeneID:3801212
KEGG:pyo:PY01096 EuPathDB:PlasmoDB:PY01096 Uniprot:Q7RQK0
Length = 853
Score = 464 (168.4 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 96/250 (38%), Positives = 163/250 (65%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDT--ILLDNFVPNDTNLHAEREYCQIITGPNMGGK 805
+VRP+ V+ + V + I + RHP+++ + + NF+PND ++ E IITGPNMGGK
Sbjct: 544 YVRPI-VEQNGKV-LEIKNSRHPLVEANYLQIKNFIPNDIHMDKENNRLNIITGPNMGGK 601
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
S YIRQ+A+I +MA +G FVP++ A++ + I R+G+SD +G STF E+ E S I
Sbjct: 602 STYIRQIAIISLMAHIGCFVPSTYAKIPIFSQIMCRIGSSDIQLKGISTFFSEMIEVSAI 661
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
++N + +LVI+DELGRGTST++G I+++ +YLL + KC+ LF TH+ +I++++ +
Sbjct: 662 IKNADSDTLVIIDELGRGTSTYEGFGISWSVANYLLNNIKCLCLFATHFHEISNLEDEHA 721
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
+V HVS K+ ++ + +++LY++ G ++ S+G VAQ+A+LP I +
Sbjct: 722 -AVSNNHVSA----KI-----DEAKKKISFLYEIKKGFADKSYGVHVAQIAKLPQKVIDK 771
Query: 986 ATVIAAKLEA 995
+ + +LE+
Sbjct: 772 SFEKSKELES 781
Score = 99 (39.9 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
Identities = 45/175 (25%), Positives = 78/175 (44%)
Query: 414 EVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMG 473
+ L N G+ TL +N T G R L +W+ HP+ D I+ RLD V EI
Sbjct: 187 QTLSQNHGGNTM-TLYKFLNKCKTKIGERKLLKWIMHPIRDEKKINQRLDMV-EIMNDDQ 244
Query: 474 SYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIF---HRTATPS 530
+ R S G++ K D+ ++ + I ++++ + S + R F + T
Sbjct: 245 ALR-SMIQGEYLRKVCDLDLIIKKLK-IANNIVKNNNMSDNHGAKQNRSFGNSNNKCTIE 302
Query: 531 EFIAVMQAILYAGKQLQQLHIDGEY----REKVTSKTLHSAL---LKRLILTASS 578
+ + + ++ A K + H EY ++K T KTL LK +I++ +S
Sbjct: 303 DLVKLYDTVI-ASKNIY--HALDEYNNGTQKKNTKKTLEENFIIPLKSIIISLTS 354
>UNIPROTKB|O13396 [details] [associations]
symbol:msh-2 "DNA mismatch repair protein msh-2"
species:367110 "Neurospora crassa OR74A" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:AF030634 EMBL:AABX02000010
RefSeq:XP_959643.1 UniGene:Ncr.25288 ProteinModelPortal:O13396
STRING:O13396 EnsemblFungi:EFNCRT00000003090 GeneID:3875790
KEGG:ncr:NCU02230 OrthoDB:EOG4S7NZ5 GO:GO:0000735 Uniprot:O13396
Length = 937
Score = 473 (171.6 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 110/280 (39%), Positives = 161/280 (57%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++VRP + + + RHP ++ F+ ND L E IITGPNMGGKS
Sbjct: 608 SYVRPK-IHPRGTGRTVLTEARHPCMEVQDDVTFITNDVTLTREDSSFLIITGPNMGGKS 666
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
YIRQ+ +I +MAQ+G FVP SSAEL + D I R+GASDS +G STF+ E+ E + IL
Sbjct: 667 TYIRQIGVIALMAQIGCFVPCSSAELTIFDSILARVGASDSQLKGVSTFMAEMLETANIL 726
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
++ TA+SL+I+DELGRGTST+DG +A+A +++++ C LF TH+ ++ + ++
Sbjct: 727 KSATAESLIIIDELGRGTSTYDGFGLAWAISEHIVKEIGCFALFATHFHELTALADQYPN 786
Query: 927 SVG---TYHVSYL-TSHKVMGPMDSKSDQ--DVTYLYKVVPGVSESSFGFKVAQLAQLPP 980
T H+S T V+ D K+ + +VT LYKV PG+ + SFG VA+L + P
Sbjct: 787 VKNLHVTAHISGTDTDTDVITDEDEKAKKKREVTLLYKVEPGICDQSFGIHVAELVRFPD 846
Query: 981 SCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQE 1020
+ A A +LE S + L V+ S Q+ E
Sbjct: 847 KVVRMAKRKADELEDFTSKHEEENGG--GLGVQYSKQDVE 884
Score = 91 (37.1 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L A L+ L ++ +G++ +L ++NH T GSRLL +W+ PL + I R
Sbjct: 290 MKLDAAALKALNLMPGARDGAKNMSLYGLLNHCKTPVGSRLLSQWLKQPLMNAEEIEKRQ 349
Query: 463 DAVSEIA 469
V A
Sbjct: 350 QLVEAFA 356
>UNIPROTKB|F1P6X2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:AAEX03004895 EMBL:AAEX03004896
Ensembl:ENSCAFT00000032471 Uniprot:F1P6X2
Length = 798
Score = 450 (163.5 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 122/441 (27%), Positives = 218/441 (49%)
Query: 609 SN-GQFSEVARARKAVQSAKEELDSLINMCRKQLGMR-NLEFMSVSG--ITHLIELPA-- 662
SN +F ++AR + +++ +I+ ++ + F S G I I+ A
Sbjct: 354 SNINEFLDIAR--RTYTEIVDDIAGMISQLAEKYNLPLRTSFSSARGFFIQMTIDCTALP 411
Query: 663 NFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
N ++P + K++ K + + S +++ ++ + E+ + L E +
Sbjct: 412 NNQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHC 471
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
++VRP F D + I G HP+L+ I ++ +
Sbjct: 472 LYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDT-----LAIKQGWHPILEKISVEKPIA 526
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
N+T + E IITGPNM GKS Y++Q+AL IMAQ+GS+VPA + + + I+TR+
Sbjct: 527 NNTYI-TEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRI 585
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
D I+ STF++E+ E +YIL N +SL+++DELGRGTST +G+ I YA +YLL
Sbjct: 586 STDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLS 645
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962
K LF TH+ ++ I+ + +V H + H V S++ + + Y YK+ G
Sbjct: 646 -LKAFTLFATHFLELCHIEALYP-NVENMH--FEVQH-VKDT--SRNKEAILYTYKLCKG 698
Query: 963 VSES-SFGFKVAQLAQLPPSCISRATVIAAKLEAEV--SSRVQNRSAKRDLLVKLSDQEQ 1019
++E ++G K A+++ LPPS + A I A++ ++ + R ++ + L+ +
Sbjct: 699 LTEEKNYGLKAAEVSSLPPSIVLDAKEITAQITRQILQNQRSTPEMERQRAVYHLATRLV 758
Query: 1020 EAQENMPVSPESF--YLGRVE 1038
+ N + P+S YL ++
Sbjct: 759 QTARNSQLDPDSLRMYLSNLK 779
Score = 109 (43.4 bits), Expect = 1.2e-45, Sum P(2) = 1.2e-45
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D I+ RLD
Sbjct: 174 IDSSSAQNLELLINNQDCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDC 233
Query: 465 VSEIAE 470
V E+ +
Sbjct: 234 VQELLQ 239
Score = 43 (20.2 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
Identities = 20/101 (19%), Positives = 47/101 (46%)
Query: 526 TATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSK----TLHSALLKRL-------IL 574
T +PS +AV++ +A ++ ID + + S+ T ++ ++ +L I+
Sbjct: 13 THSPSVIVAVVEGRGHARGEIGMASIDLRSPQIILSQFADNTTYAKVITKLKILSPLEII 72
Query: 575 TASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE 615
+++ V+G + KL + + + + +N I F+E
Sbjct: 73 MSNTACVVGNSTKLFTLITENFKN----VNFTTIQRKYFNE 109
>UNIPROTKB|E2RJA9 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AAEX03004895 EMBL:AAEX03004896 Ensembl:ENSCAFT00000037908
Uniprot:E2RJA9
Length = 930
Score = 450 (163.5 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 122/441 (27%), Positives = 218/441 (49%)
Query: 609 SN-GQFSEVARARKAVQSAKEELDSLINMCRKQLGMR-NLEFMSVSG--ITHLIELPA-- 662
SN +F ++AR + +++ +I+ ++ + F S G I I+ A
Sbjct: 486 SNINEFLDIAR--RTYTEIVDDIAGMISQLAEKYNLPLRTSFSSARGFFIQMTIDCTALP 543
Query: 663 NFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722
N ++P + K++ K + + S +++ ++ + E+ + L E +
Sbjct: 544 NNQLPSEFIKISKVKSSYTFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHC 603
Query: 723 FXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVP 782
++VRP F D + I G HP+L+ I ++ +
Sbjct: 604 LYKLSDTVSMLDMLLSFAHACTLSDYVRPEFTDT-----LAIKQGWHPILEKISVEKPIA 658
Query: 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842
N+T + E IITGPNM GKS Y++Q+AL IMAQ+GS+VPA + + + I+TR+
Sbjct: 659 NNTYI-TEGSNFLIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRI 717
Query: 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902
D I+ STF++E+ E +YIL N +SL+++DELGRGTST +G+ I YA +YLL
Sbjct: 718 STDDDIETNSSTFMKEMKEIAYILHNANNKSLILIDELGRGTSTEEGIGICYAVCEYLLS 777
Query: 903 HKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962
K LF TH+ ++ I+ + +V H + H V S++ + + Y YK+ G
Sbjct: 778 -LKAFTLFATHFLELCHIEALYP-NVENMH--FEVQH-VKDT--SRNKEAILYTYKLCKG 830
Query: 963 VSES-SFGFKVAQLAQLPPSCISRATVIAAKLEAEV--SSRVQNRSAKRDLLVKLSDQEQ 1019
++E ++G K A+++ LPPS + A I A++ ++ + R ++ + L+ +
Sbjct: 831 LTEEKNYGLKAAEVSSLPPSIVLDAKEITAQITRQILQNQRSTPEMERQRAVYHLATRLV 890
Query: 1020 EAQENMPVSPESF--YLGRVE 1038
+ N + P+S YL ++
Sbjct: 891 QTARNSQLDPDSLRMYLSNLK 911
Score = 109 (43.4 bits), Expect = 3.6e-45, Sum P(2) = 3.6e-45
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D I+ RLD
Sbjct: 306 IDSSSAQNLELLINNQDCRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDC 365
Query: 465 VSEIAE 470
V E+ +
Sbjct: 366 VQELLQ 371
Score = 43 (20.2 bits), Expect = 3.0e-38, Sum P(2) = 3.0e-38
Identities = 20/101 (19%), Positives = 47/101 (46%)
Query: 526 TATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSK----TLHSALLKRL-------IL 574
T +PS +AV++ +A ++ ID + + S+ T ++ ++ +L I+
Sbjct: 145 THSPSVIVAVVEGRGHARGEIGMASIDLRSPQIILSQFADNTTYAKVITKLKILSPLEII 204
Query: 575 TASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSE 615
+++ V+G + KL + + + + +N I F+E
Sbjct: 205 MSNTACVVGNSTKLFTLITENFKN----VNFTTIQRKYFNE 241
>UNIPROTKB|F1P4E2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0001541 "ovarian follicle development" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0007292 "female gamete generation" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:AADN02012381 IPI:IPI00596754 Ensembl:ENSGALT00000018582
Uniprot:F1P4E2
Length = 846
Score = 447 (162.4 bits), Expect = 4.3e-45, Sum P(2) = 4.3e-45
Identities = 117/390 (30%), Positives = 189/390 (48%)
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMR-NLEFMSVSGITHLIELPA------NFKVPLNWA 671
AR+ +++ +I ++ + F SV G I++ A N K+P +
Sbjct: 414 ARRTYTEIVDDIAGMITQLAEKYNLPLKTSFSSVRGF--FIQMNADCSALPNGKLPSEFT 471
Query: 672 KVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXX 731
KV T+ T + S +++ ++ + E+ + L E +
Sbjct: 472 KVTKTRNTYSFTSADLIKMNERCQESLREIYHMTYLIVCKLLNEIYEHIHCLYKLSDIVS 531
Query: 732 XXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAER 791
++VRP F D + I G HP+L+ I ++ V N+ L E
Sbjct: 532 MLDMLLSFAHACTISDYVRPEFTDT-----LAIKQGWHPILEKIAMEKPVSNNAYL-TEG 585
Query: 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
IITGPNM GKS YI+Q+AL IMAQ+GS+VPA + + I+TR+G D I+
Sbjct: 586 SNFLIITGPNMSGKSTYIKQIALCQIMAQIGSYVPAEYCSFRIAEQIFTRIGMDDDIETN 645
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
STF++E+ E +YI++N +SL+I+DELGRGTS +G+ I YA +YLL + K LF
Sbjct: 646 ASTFMKEMKEITYIIQNANDKSLIIIDELGRGTSAEEGIGICYAACEYLL-NLKAFTLFA 704
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSES-SFGF 970
TH+ ++ + + +V YH +V S + +TY Y + G +E ++G
Sbjct: 705 THFLELCHMDALYP-NVENYHF------EVQHVRSSAGKEKITYTYTLSKGYTEEKNYGL 757
Query: 971 KVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
K A+++ LPPS I A I + ++ R
Sbjct: 758 KAAEVSSLPPSIILDAKAITNHIAKQILHR 787
Score = 109 (43.4 bits), Expect = 4.3e-45, Sum P(2) = 4.3e-45
Identities = 24/66 (36%), Positives = 36/66 (54%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE++ NN + TL ++N+T T GSR LR + PL D I RLD
Sbjct: 225 IDSSSAQNLELVTNNRDSRNGHTLFGVLNYTRTPGGSRRLRSNILEPLVDAETIKTRLDC 284
Query: 465 VSEIAE 470
V E +
Sbjct: 285 VQEFLQ 290
>ASPGD|ASPL0000073909 [details] [associations]
symbol:AN10621 species:162425 "Emericella nidulans"
[GO:0000228 "nuclear chromosome" evidence=IEA] [GO:0032302
"MutSbeta complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000404 "loop DNA
binding" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0000406 "double-strand/single-strand DNA
junction binding" evidence=IEA] [GO:0032138 "single base insertion
or deletion binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IEA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006200 GO:GO:0016887 GO:GO:0030466 GO:GO:0006298
EMBL:BN001303 GO:GO:0000228 GO:GO:0000403 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0032301
GO:GO:0032138 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GO:GO:0000735 EnsemblFungi:CADANIAT00005387 Uniprot:C8V8L9
Length = 945
Score = 468 (169.8 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 102/258 (39%), Positives = 153/258 (59%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHP ++ +F+ ND +L + IITGPNMGGKS YIR + +I +MAQ+G FVP
Sbjct: 634 RHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPC 693
Query: 828 SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTH 887
+ AEL + D I R+GASDS +G STF+ E+ E S IL++ T++SL+I+DELGRGTST+
Sbjct: 694 TEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTY 753
Query: 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHV-SYLTSHKVMGPMD 946
DG +A+A ++++ +C LF TH+ ++ + ++ SV HV +++ D
Sbjct: 754 DGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEED 813
Query: 947 SKSD----QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQ 1002
K Q VT LY+V PG+ + SFG VA+L + P ++ A A +LE S+
Sbjct: 814 EKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEELEDFTSADSA 873
Query: 1003 NRSAKRDLLVKLSDQEQE 1020
+A + K S +E E
Sbjct: 874 GNAASATI-DKYSQEEVE 890
Score = 93 (37.8 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISAR 461
M L A L+ L ++ +GS+ +L ++NH T GSRLL +W+ PL D I R
Sbjct: 296 MKLDAAALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKR 354
Score = 40 (19.1 bits), Expect = 5.0e-45, Sum P(3) = 5.0e-45
Identities = 30/103 (29%), Positives = 43/103 (41%)
Query: 544 KQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLL 603
K+L QL D K ++ L + K+L L + V G +L T N EA G +
Sbjct: 479 KKLDQLRHDMYLEHKAVARDLDQEMDKKLFL--ENHRVYGWCFRL--TRN-EA---GCIR 530
Query: 604 NLMIIS--NGQFSEVARARKAVQSAKEELDSLI-NMCRKQLGM 643
N + Q + V +QS + E D L N R Q G+
Sbjct: 531 NKKAYQECSTQKNGVYFTTSTMQSLRREHDQLSSNYNRTQTGL 573
Score = 37 (18.1 bits), Expect = 3.4e-39, Sum P(3) = 3.4e-39
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 500 YILSSVLTSLGRS-----PDIQRGIT--RIFHRTA 527
Y +SVL +LGRS P + IT R F R A
Sbjct: 57 YKTTSVLRNLGRSETGGLPSVTMSITVFRNFLREA 91
>UNIPROTKB|E1BK76 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150
EMBL:DAAA02008282 EMBL:DAAA02008283 EMBL:DAAA02008284
IPI:IPI00710010 Ensembl:ENSBTAT00000024552 Uniprot:E1BK76
Length = 855
Score = 443 (161.0 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 137/502 (27%), Positives = 239/502 (47%)
Query: 558 KVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLM------IISN- 610
K+T K ++ LL+ + K+ + +N +A LN+ + SN
Sbjct: 354 KITLKNCNTPLLRAYYGSLEDKRFGIILDKIKTVINDDARYMKGCLNMRTQKCYAVRSNI 413
Query: 611 GQFSEVARARKAVQSAKEELDSLINMCRK-QLGMRNLEFMSVSGI-----THLIELPANF 664
+F ++AR R + + + + K L +R F S G T LP N
Sbjct: 414 NEFLDIAR-RTYTEIVDDIAGMITQLAEKYSLPLRT-SFSSARGFFIQMTTDCTVLP-ND 470
Query: 665 KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFX 724
++P + K++ K + + S +++ ++ + E+ + L E +
Sbjct: 471 QLPSEFIKISKVKNSYSFTSADLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLY 530
Query: 725 XXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPND 784
++VRP F D + I G HP+L+ I ++ V N+
Sbjct: 531 KLSDTVSMLDMLLSFAHACTLSDYVRPEFTDT-----LAIKQGWHPILERISVEKPVANN 585
Query: 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGA 844
T + E IITGPNM GKS Y++Q+AL IMAQ+GS+VPA + + + I+TR+
Sbjct: 586 TYI-TEGSNFFIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRIST 644
Query: 845 SDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904
D I+ STF++E+ E +YIL N +SL+++DELGRGT+T +G+ I YA ++LL
Sbjct: 645 DDDIETNSSTFMKEMKEVAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEHLLS-L 703
Query: 905 KCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVS 964
K LF TH+ ++ I + +V H + H V S++ + + Y YK+ G++
Sbjct: 704 KAFTLFATHFLELCQIDVLYP-NVENMH--FEVQH-VKNT--SRNKEAILYTYKLSKGLT 757
Query: 965 ES-SFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN-RSA----KRDLLVKLSDQE 1018
E ++G K A+++ LPPS + A I ++ ++ +QN RSA ++ + L+ +
Sbjct: 758 EEKNYGLKAAEVSSLPPSIVLDAKDITTQITRQI---LQNQRSAPEMERQRAVYHLATRL 814
Query: 1019 QEAQENMPVSPESF--YLGRVE 1038
+ N + P+S YL ++
Sbjct: 815 VQTARNSQLDPDSLRTYLSNLK 836
Score = 112 (44.5 bits), Expect = 6.2e-45, Sum P(2) = 6.2e-45
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D I+ RLD
Sbjct: 231 IDSSSAQNLELLINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDVETINMRLDC 290
Query: 465 VSEIAE 470
V E+ +
Sbjct: 291 VQELLQ 296
>UNIPROTKB|Q8F496 [details] [associations]
symbol:mutS "DNA mismatch repair protein MutS"
species:189518 "Leptospira interrogans serovar Lai str. 56601"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
HAMAP:MF_00096 InterPro:IPR000432 InterPro:IPR005748
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0008094 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300 OMA:HYFELTV
EMBL:AE010300 GenomeReviews:AE010300_GR KO:K03555
ProtClustDB:PRK05399 PANTHER:PTHR11361:SF34 TIGRFAMs:TIGR01070
HOGENOM:HOG000221406 RefSeq:NP_712327.1 ProteinModelPortal:Q8F496
PaxDb:Q8F496 GeneID:1151489 KEGG:lil:LA_2146 PATRIC:22385139
BioCyc:LINT189518:GJBB-1740-MONOMER Uniprot:Q8F496
Length = 848
Score = 437 (158.9 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 128/441 (29%), Positives = 227/441 (51%)
Query: 569 LKRLILTASSPAVIG-KAAKLLSTVNKEAADQGDLLNLMIISNGQF------SEVARARK 621
LK + S P +I + K +S +E GD L + I+ NG F ++ +AR+
Sbjct: 368 LKEELEKVSYPFLIPIEELKKISDFIQERLHPGDDLPV-ILGNGIFLKKGFSQKLDQARE 426
Query: 622 AVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP-ANFK-VPLNWAKVNSTKKT 679
A K+ + L +K+ G+ L+ + + IE+ A + P ++ K + +
Sbjct: 427 AGVKGKDWILDLETKEKKRTGLNTLKIRYNKIVGYFIEISRAQAEQAPKDYLKKQTLVGS 486
Query: 680 IRYHSPEVLTALDQLAL-ANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXX 738
R+ P+ L +++ L A+E + + R ++ ++E + +
Sbjct: 487 ERFTMPK-LEEIERTILEADEIIQEIERTEFNRMVEEVLKFSSSLLSFSEEIGDLDFQIS 545
Query: 739 XXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILL--DNFVPNDTNLHAEREYCQI 796
++RP +D + + RHPV++ L F+PN L + + +
Sbjct: 546 LLTAKDKFGWIRPKLSEDRS---LDLSDSRHPVVEATLPPGQEFIPNSVYLDTQDKAIAV 602
Query: 797 ITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFL 856
+TGPNM GKS ++RQ+AL I+ Q+G+FVPA SA+L ++D ++TR+GA D++ G STF
Sbjct: 603 LTGPNMAGKSTFMRQIALNQILFQIGAFVPAKSAKLPIVDKLFTRIGAGDNLTAGESTFF 662
Query: 857 EELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK-KCMVLFVTHYP 915
E+ E + IL + T SL++ DE+GRGTST+DG++IA++ L+YL + +F THY
Sbjct: 663 VEMKETANILNHYTEDSLILFDEVGRGTSTYDGMSIAWSILEYLSSLSVRPKTIFATHYH 722
Query: 916 KIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQL 975
++ ++ G G +++ YL + + K D+ V +L KV G ++ SFG VA++
Sbjct: 723 ELTELSR--LG--GIFNL-YLETLE-------KEDR-VLFLRKVKVGKAKKSFGIYVAKI 769
Query: 976 AQLPPSCISRATVIAAKLEAE 996
A +P + RA + LE++
Sbjct: 770 AGVPEPIVKRAAELLTDLESK 790
Score = 116 (45.9 bits), Expect = 1.1e-44, Sum P(2) = 1.1e-44
Identities = 25/83 (30%), Positives = 47/83 (56%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMT-ASIPTF 148
TP+ +Q + +K +PD +L +G + F EDA++A+ +L I N + IP
Sbjct: 22 TPMMKQFLAIKKDFPDTILFFRMGDFYEMFLEDAKIASSILDIALTKRQNAVPMCGIPYH 81
Query: 149 RLNVHVRRLVNAGFKVGVVKQTE 171
+ ++ RL+NAG K+ + +Q++
Sbjct: 82 SKDNYISRLLNAGKKIAICEQSK 104
Score = 81 (33.6 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 60/261 (22%), Positives = 107/261 (40%)
Query: 397 LSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRN 456
LS + + T++ LE++ N + TL I N T G RLL++ + P CD
Sbjct: 251 LSSGKFLEMDRETIRNLELVENEKEKNN--TLYSIFNFCNTAKGKRLLKQRILFPECDPV 308
Query: 457 LISARLDAVSEIAES-MGSYRTSESVGQHDEKNSDVTIVEPQFYYI--LSSVLTSLGRSP 513
++ +R + + ++ + Y T+ + + +T Y S+L S+
Sbjct: 309 VLYSRWEKQDILLKTVLAPYITA--LKDFGDLERILTRFRGNHAYPRDFRSLLNSISSGI 366
Query: 514 DIQRGITRIFHRTATPSEFIA----VMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALL 569
++ + ++ + P E + +Q L+ G L + +G + +K S+ L A
Sbjct: 367 KLKEELEKVSYPFLIPIEELKKISDFIQERLHPGDDLPVILGNGIFLKKGFSQKLDQA-- 424
Query: 570 KRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISN---GQFSEVARARKAVQSA 626
V GK +L KE G L L I N G F E++RA+ A Q+
Sbjct: 425 -------REAGVKGKDW-ILDLETKEKKRTG-LNTLKIRYNKIVGYFIEISRAQ-AEQAP 474
Query: 627 KEELDSLINMCRKQLGMRNLE 647
K+ L + ++ M LE
Sbjct: 475 KDYLKKQTLVGSERFTMPKLE 495
>POMBASE|SPAC13F5.01c [details] [associations]
symbol:msh1 "mitochondrial MutS protein Msh1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005524
"ATP binding" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0006298 "mismatch repair" evidence=ISM]
[GO:0008094 "DNA-dependent ATPase activity" evidence=ISO]
[GO:0030983 "mismatched DNA binding" evidence=ISM] [GO:0043504
"mitochondrial DNA repair" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 PomBase:SPAC13F5.01c GO:GO:0005739
GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0006298
GO:GO:0030983 GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 EMBL:AB027833 PIR:T38256 RefSeq:NP_593649.2
ProteinModelPortal:O13921 STRING:O13921 PRIDE:O13921
EnsemblFungi:SPAC13F5.01c.1 GeneID:2542833 KEGG:spo:SPAC13F5.01c
HOGENOM:HOG000157750 OMA:LAMQCGD OrthoDB:EOG42591V NextBio:20803875
SUPFAM:SSF53150 Uniprot:O13921
Length = 941
Score = 487 (176.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 172/612 (28%), Positives = 291/612 (47%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY-GTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISAR 461
M + + ++ LE+ R++ + Y G+LLH +N T+T GSRLL R + P + I+ R
Sbjct: 343 MIIGESAMKGLEI-RSSLYQNRYTGSLLHAINKTVTKSGSRLLTRRLCAPSTNIVEINNR 401
Query: 462 LDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITR 521
LD V + + S+ + + N I++ +S L + D IT+
Sbjct: 402 LDLVEKF--KLLPELCSKVINLLKKSNDTHRILQHLLMGRGNSY--DLLKMAD-NFSITK 456
Query: 522 IFHRTATPSEFIAVMQAIL---YAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASS 578
H +P E + + +L + +L+QL I+ E K + + ++ +
Sbjct: 457 EIHSLLSPLESSSAFRLLLLNMHPHDELKQL-INNAVDENALMKQKINEEEETEVIAQEA 515
Query: 579 PAVIGKAAKLLSTVNKEAADQGDLL-----NLMIISNGQFSEVARARKAVQSAKEELDSL 633
++ + V K + + D+ N ++ SN + + + + +QS D L
Sbjct: 516 EEILQDENAQVEIVKKSLSSEFDIRQSFKENWVVKSNFN-NNLRKLHEKLQSLFASYDKL 574
Query: 634 INMCRKQLGMRNLEFMSVSGITHL-IELPAN-----FKVPLNWAKV-NSTKKTIRYHSPE 686
K+LG + S + + ++ ++L N F A + STK T + P
Sbjct: 575 QEDLSKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLFQSTKSTASFQLPG 634
Query: 687 VLTALDQLALANEELTIVC--RAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSR 744
T+L + L N +L I + S E ++ ++
Sbjct: 635 -WTSLG-MDLENTKLHIHQEEQRVLKSITDEIVSHHKTLRSLANALDELDISTSLATLAQ 692
Query: 745 NKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL---LDNFVPNDTNLHAEREYCQIITGPN 801
++FVRPV D H I GRHP+++ L L F PND + +ITGPN
Sbjct: 693 EQDFVRPVVDDSHAHTVIQ---GRHPIVEKGLSHKLIPFTPNDCFVGNGNVNIWLITGPN 749
Query: 802 MGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE 861
M GKS ++RQ A+I I+AQ+GSFVPAS+A + ++D I++R+G++D++ Q +STF+ E+ E
Sbjct: 750 MAGKSTFLRQNAIISILAQIGSFVPASNARIGIVDQIFSRIGSADNLYQQKSTFMVEMME 809
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921
S+IL+N T +S VI+DE+GRGT+ DG+AIAY L YL LF TH ++ ++
Sbjct: 810 TSFILKNATRRSFVIMDEIGRGTTASDGIAIAYGCLKYLSTINHSRTLFATHAHQLTNL- 868
Query: 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPS 981
TK +V Y T+ + + D ++ YK+ GV+ S G KVA++A +P +
Sbjct: 869 TKSFKNVECY----CTNLSI-----DRDDHTFSFDYKLKKGVNYQSHGLKVAEMAGIPKN 919
Query: 982 CISRATVIAAKL 993
+ A + L
Sbjct: 920 VLLAAEEVLTLL 931
Score = 64 (27.6 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
Identities = 41/175 (23%), Positives = 72/175 (41%)
Query: 91 PLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMT----ASIP 146
PL ++V + K+ D +L+ +VG + + E AE +L + + A P
Sbjct: 62 PLLKEVSFQQKKFADCVLLTKVGNFYEMYFEQAEKIGPLLNLRVSKKKTSKSDVSMAGFP 121
Query: 147 TFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXXXX 206
F+L+ +++ LV K V +E + R ++ + T TL
Sbjct: 122 FFKLDRYLKILVEDLKKC--VALSEEVIRPVDDLSSKNMYIRSVTRVITPGTLIDENFMN 179
Query: 207 XXXXXXXXXSNYLVCVVDDDGNVGK-IRN-GVFGDG--F-DVRLGVVAVEISTGD 256
SNY++ VV D I N G D F D ++G+ +++STG+
Sbjct: 180 PYE------SNYILTVVFDPNFFSSDISNQGTAEDKDCFADCKIGLSWLDLSTGE 228
>UNIPROTKB|I3L5Z8 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 EMBL:CU929611 EMBL:FP312934
Ensembl:ENSSSCT00000023892 Uniprot:I3L5Z8
Length = 902
Score = 438 (159.2 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 122/430 (28%), Positives = 207/430 (48%)
Query: 621 KAVQSAKE--ELDSLINMCRK-QLGMRNLEFMSVSG--ITHLIELPANF--KVPLNWAKV 673
K V+S K+ L + + K L +R F S G I + A F K+P + K+
Sbjct: 468 KIVKSLKDFWPLGMISQLAEKYSLPLRT-SFSSARGFFIQMTTDCTALFNDKLPSEFIKI 526
Query: 674 NSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXX 733
+ K + + S +++ ++ + E+ + L E +
Sbjct: 527 SKVKNSYSFTSTDLIKMNERCQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSML 586
Query: 734 XXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREY 793
++VRP F D + I G HP+L+ I ++ V N+T + E
Sbjct: 587 DMLLSFAHACTLSDYVRPEFTDT-----LAIKQGWHPILEKISVEKPVANNTYI-TEGSN 640
Query: 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRS 853
IITGPNM GKS Y++Q+AL IMAQ+GS+VPA + + + I+TR+ D I+ S
Sbjct: 641 FVIITGPNMSGKSTYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSS 700
Query: 854 TFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913
TF++E+ E +YIL N +SL+++DELGRGT+T +G+ I YA +YLL K LF TH
Sbjct: 701 TFMKEMKEIAYILHNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATH 759
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSES-SFGFKV 972
+ ++ I + Y + H V S++ + + Y YK+ G++E ++G K
Sbjct: 760 FLELCHIDVLYPNVENMY---FEVQH-VKNT--SRNKEAILYTYKLSKGLTEEKNYGLKA 813
Query: 973 AQLAQLPPSCISRATVIAAKLEAEV--SSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPE 1030
A+ + LPPS + A I ++ ++ + R ++ + L+ + + N + P+
Sbjct: 814 AEASSLPPSIVLDAKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPD 873
Query: 1031 SF--YLGRVE 1038
S YL ++
Sbjct: 874 SLRTYLSNLK 883
Score = 114 (45.2 bits), Expect = 1.9e-44, Sum P(2) = 1.9e-44
Identities = 41/175 (23%), Positives = 80/175 (45%)
Query: 305 SNVRVECASRDCFIGGGA--LAEVMSLYENMGEDTLSN---NEDQNMDVPEQGNHRSAIE 359
S + + ++ C +G + ++N+ T+ NE + ++ EQ
Sbjct: 165 SPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFST 224
Query: 360 GIMNMPD--LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMT--LSANTLQQLEV 415
+M + + A+A ++++ +F ++ + S + E T + +++ Q LE+
Sbjct: 225 VLMEVQSKYYCLAAVAALLKYI-EF-IQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLEL 282
Query: 416 LRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
L NN + TL ++N+T T GSR LR + PL D I+ RLD V E+ +
Sbjct: 283 LINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQ 337
Score = 41 (19.5 bits), Expect = 9.0e-37, Sum P(2) = 9.0e-37
Identities = 33/161 (20%), Positives = 58/161 (36%)
Query: 476 RTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAV 535
+T S G H + S PQ Y +S SP + + R E
Sbjct: 79 KTPLSAGNH--QRSGYKSWTPQMEYSATSSSAVSAHSPSVVVAVVE--GRGLARGEI--G 132
Query: 536 MQAILYAGKQ--LQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVN 593
M +I Q L Q + Y + +T + S L I+ +++ V+G + KL + +
Sbjct: 133 MASIDLKSPQIILSQFADNTTYAKVITKLKILSPLE---IIMSNTACVVGNSTKLFTLIT 189
Query: 594 KEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLI 634
+ + +N I F+E Q E +++
Sbjct: 190 ENFKN----VNFTTIQRKYFNETKGLEYIEQLCTAEFSTVL 226
>UNIPROTKB|O15457 [details] [associations]
symbol:MSH4 "MutS protein homolog 4" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0001541
"ovarian follicle development" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0007292 "female gamete
generation" evidence=IEA] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0000795 "synaptonemal complex" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IRD] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0003677 "DNA binding" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:CH471059 GO:GO:0007283
GO:GO:0006298 EMBL:AL357314 Reactome:REACT_111183 GO:GO:0001541
GO:GO:0030983 EMBL:AL445464 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 KO:K08740 OMA:GFFIQMT Gene3D:3.30.420.110
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U89293 EMBL:AF104243
EMBL:AY268350 EMBL:BC033030 IPI:IPI00289914 RefSeq:NP_002431.2
UniGene:Hs.216639 ProteinModelPortal:O15457 SMR:O15457
IntAct:O15457 STRING:O15457 PhosphoSite:O15457 PRIDE:O15457
DNASU:4438 Ensembl:ENST00000263187 GeneID:4438 KEGG:hsa:4438
UCSC:uc001dhd.2 CTD:4438 GeneCards:GC01P076262 HGNC:HGNC:7327
HPA:HPA028117 MIM:602105 neXtProt:NX_O15457 PharmGKB:PA31135
HOGENOM:HOG000290656 HOVERGEN:HBG036910 InParanoid:O15457
OrthoDB:EOG4DR9BS PhylomeDB:O15457 GenomeRNAi:4438 NextBio:17297
ArrayExpress:O15457 Bgee:O15457 CleanEx:HS_MSH4
Genevestigator:O15457 GermOnline:ENSG00000057468 Uniprot:O15457
Length = 936
Score = 442 (160.7 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 125/470 (26%), Positives = 226/470 (48%)
Query: 587 KLLSTVNKEAADQGDLLNLM------IISN-GQFSEVARARKAVQSAKEELDSLINMCRK 639
K+ + +N +A LN+ + SN +F ++AR + +++ +I+ +
Sbjct: 464 KIKTVINDDARYMKGCLNMRTQKCYAVRSNINEFLDIAR--RTYTEIVDDIAGMISQLGE 521
Query: 640 QLGMR-NLEFMSVSGI-----THLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQ 693
+ + F S G T I LP++ ++P + K++ K + + S +++ ++
Sbjct: 522 KYSLPLRTSFSSARGFFIQMTTDCIALPSD-QLPSEFIKISKVKNSYSFTSADLIKMNER 580
Query: 694 LALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVF 753
+ E+ + L E + ++VRP F
Sbjct: 581 CQESLREIYHMTYMIVCKLLSEIYEHIHCLYKLSDTVSMLDMLLSFAHACTLSDYVRPEF 640
Query: 754 VDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVA 813
D + I G HP+L+ I + + N+T + E IITGPNM GKS Y++Q+A
Sbjct: 641 TDT-----LAIKQGWHPILEKISAEKPIANNTYV-TEGSNFLIITGPNMSGKSTYLKQIA 694
Query: 814 LIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS 873
L IMAQ+GS+VPA + + I+TR+ D I+ STF++E+ E +YIL N +S
Sbjct: 695 LCQIMAQIGSYVPAEYSSFRIAKQIFTRISTDDDIETNSSTFMKEMKEIAYILHNANDKS 754
Query: 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHV 933
L+++DELGRGT+T +G+ I YA +YLL K LF TH+ ++ I + +V H
Sbjct: 755 LILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIDALYP-NVENMH- 811
Query: 934 SYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSES-SFGFKVAQLAQLPPSCISRATVIAAK 992
+ H V S++ + + Y YK+ G++E ++G K A+++ LPPS + A I +
Sbjct: 812 -FEVQH-VKNT--SRNKEAILYTYKLSKGLTEEKNYGLKAAEVSSLPPSIVLDAKEITTQ 867
Query: 993 LEAEV--SSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESF--YLGRVE 1038
+ ++ + R ++ + L+ + + N + P+S YL ++
Sbjct: 868 ITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRIYLSNLK 917
Score = 109 (43.4 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
Identities = 25/66 (37%), Positives = 38/66 (57%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D I+ RLD
Sbjct: 312 IDSSSAQNLELLINNQDYRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDC 371
Query: 465 VSEIAE 470
V E+ +
Sbjct: 372 VQELLQ 377
>UNIPROTKB|Q752H0 [details] [associations]
symbol:AFR603C "AFR603Cp" species:284811 "Ashbya gossypii
ATCC 10895" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0000735 "removal of nonhomologous ends"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0006301 "postreplication repair" evidence=IBA] [GO:0006311
"meiotic gene conversion" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0030466 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
EMBL:AE016819 GenomeReviews:AE016819_GR SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 OrthoDB:EOG4S7NZ5
GO:GO:0000735 RefSeq:NP_986150.1 ProteinModelPortal:Q752H0
STRING:Q752H0 EnsemblFungi:AAS53974 GeneID:4622435
KEGG:ago:AGOS_AFR603C PhylomeDB:Q752H0 Uniprot:Q752H0
Length = 956
Score = 476 (172.6 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 103/248 (41%), Positives = 152/248 (61%)
Query: 748 FVRPVFVDDHEPVQ-IHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRPV D H + + + + RHP+++ F+ ND L A+ IITGPNMGGKS
Sbjct: 631 YVRPVMYDMHAGQRKMELLASRHPLVEAQDEVTFISNDVVLEADSSGFAIITGPNMGGKS 690
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
YIRQV +I ++AQ+G FVP +AE+ ++D I R+GA DS +G STF+ E+ E + IL
Sbjct: 691 TYIRQVGVICLLAQIGCFVPCDAAEITIVDAILCRVGAGDSQLKGVSTFMAEMLETASIL 750
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
RN T SL+I+DELGRGTST+DG +A++ +++ ++ C LF TH+ ++ +
Sbjct: 751 RNATKNSLIIIDELGRGTSTYDGFGLAWSISEHIAKNIGCFALFATHFHELTALADDCP- 809
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
+V HV +H + KSD D+T LYKV PG+S+ SFG VA++ Q P + A
Sbjct: 810 NVTNLHV---VAH--VEEKSHKSD-DITLLYKVEPGISDQSFGIHVAEVVQFPSKIVKMA 863
Query: 987 TVIAAKLE 994
A +L+
Sbjct: 864 KRKATELD 871
Score = 73 (30.8 bits), Expect = 3.1e-44, Sum P(2) = 3.1e-44
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 421 NGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESM 472
NG + +LL ++N T G RLL W+ PL D+ I R + V + + +
Sbjct: 326 NG-KITSLLQLLNKCKTNAGVRLLNEWLKQPLSDKGSIEKRHNLVDYLVDQL 376
>UNIPROTKB|F1S9R2 [details] [associations]
symbol:MSH4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0007129 "synapsis"
evidence=IEA] [GO:0001541 "ovarian follicle development"
evidence=IEA] [GO:0000795 "synaptonemal complex" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007129
GO:GO:0000795 GeneTree:ENSGT00550000074897 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:CU929611
EMBL:FP312934 Ensembl:ENSSSCT00000004176 Uniprot:F1S9R2
Length = 934
Score = 436 (158.5 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 100/297 (33%), Positives = 164/297 (55%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++VRP F D + I G HP+L+ I ++ V N+T + E IITGPNM GKS
Sbjct: 632 DYVRPEFTDT-----LAIKQGWHPILEKISVEKPVANNTYI-TEGSNFVIITGPNMSGKS 685
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
Y++Q+AL IMAQ+GS+VPA + + + I+TR+ D I+ STF++E+ E +YIL
Sbjct: 686 TYLKQIALCQIMAQIGSYVPAEYSSFRIAEQIFTRISTDDDIETNSSTFMKEMKEIAYIL 745
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
N +SL+++DELGRGT+T +G+ I YA +YLL K LF TH+ ++ I +
Sbjct: 746 HNANDKSLILIDELGRGTNTEEGIGICYAVCEYLLS-LKAFTLFATHFLELCHIDVLYPN 804
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSES-SFGFKVAQLAQLPPSCISR 985
Y + H V S++ + + Y YK+ G++E ++G K A+ + LPPS +
Sbjct: 805 VENMY---FEVQH-VKNT--SRNKEAILYTYKLSKGLTEEKNYGLKAAEASSLPPSIVLD 858
Query: 986 ATVIAAKLEAEV--SSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESF--YLGRVE 1038
A I ++ ++ + R ++ + L+ + + N + P+S YL ++
Sbjct: 859 AKEITTQITRQILQNQRSTPEMERQRAVYHLATRLVQTARNSQLDPDSLRTYLSNLK 915
Score = 114 (45.2 bits), Expect = 3.9e-44, Sum P(2) = 3.9e-44
Identities = 41/175 (23%), Positives = 80/175 (45%)
Query: 305 SNVRVECASRDCFIGGGA--LAEVMSLYENMGEDTLSN---NEDQNMDVPEQGNHRSAIE 359
S + + ++ C +G + ++N+ T+ NE + ++ EQ
Sbjct: 203 SPLEIIMSNTACVVGNSTKLFTLITENFKNVNFTTIQRKYFNETKGLEYIEQLCTAEFST 262
Query: 360 GIMNMPD--LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMT--LSANTLQQLEV 415
+M + + A+A ++++ +F ++ + S + E T + +++ Q LE+
Sbjct: 263 VLMEVQSKYYCLAAVAALLKYI-EF-IQNSLYAPKSLKICFQGSEQTAMIDSSSAQNLEL 320
Query: 416 LRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
L NN + TL ++N+T T GSR LR + PL D I+ RLD V E+ +
Sbjct: 321 LINNQDSRNNHTLFGVLNYTKTPGGSRRLRSNILEPLVDIETINMRLDCVQELLQ 375
Score = 41 (19.5 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 33/161 (20%), Positives = 58/161 (36%)
Query: 476 RTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAV 535
+T S G H + S PQ Y +S SP + + R E
Sbjct: 117 KTPLSAGNH--QRSGYKSWTPQMEYSATSSSAVSAHSPSVVVAVVE--GRGLARGEI--G 170
Query: 536 MQAILYAGKQ--LQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVN 593
M +I Q L Q + Y + +T + S L I+ +++ V+G + KL + +
Sbjct: 171 MASIDLKSPQIILSQFADNTTYAKVITKLKILSPLE---IIMSNTACVVGNSTKLFTLIT 227
Query: 594 KEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLI 634
+ + +N I F+E Q E +++
Sbjct: 228 ENFKN----VNFTTIQRKYFNETKGLEYIEQLCTAEFSTVL 264
>FB|FBgn0015546 [details] [associations]
symbol:spel1 "spellchecker1" species:7227 "Drosophila
melanogaster" [GO:0006298 "mismatch repair" evidence=ISS;NAS;IMP]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
[GO:0006301 "postreplication repair" evidence=IBA;NAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0032302 "MutSbeta
complex" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0003684 "damaged
DNA binding" evidence=IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0042771 EMBL:AE014134 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 OMA:WAISEHI GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 GeneTree:ENSGT00550000074867 EMBL:U17893
RefSeq:NP_001014482.1 RefSeq:NP_001246031.1 RefSeq:NP_523565.2
UniGene:Dm.2676 ProteinModelPortal:P43248 SMR:P43248 DIP:DIP-21499N
IntAct:P43248 MINT:MINT-1547583 STRING:P43248 PaxDb:P43248
EnsemblMetazoa:FBtr0080630 EnsemblMetazoa:FBtr0309281 GeneID:34842
KEGG:dme:Dmel_CG4215 UCSC:CG4215-RA CTD:34842 FlyBase:FBgn0015546
InParanoid:P43248 OrthoDB:EOG4S1RP5 PhylomeDB:P43248
GenomeRNAi:34842 NextBio:790493 Bgee:P43248 GermOnline:CG4215
Uniprot:P43248
Length = 917
Score = 466 (169.1 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 170/591 (28%), Positives = 267/591 (45%)
Query: 484 HDEKNSDVTIVE-PQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYA 542
+D N ++E P LS L L R PDI ++ R A + + Q IL
Sbjct: 358 NDRHNIVQCLLESPDTMETLS--LDYLKRIPDILMLTKKLMRRKANLQDLFRIYQVILRT 415
Query: 543 GKQLQQLH-IDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGD 601
K L+ LH +D E V S LK L G + V+ EA ++G+
Sbjct: 416 PKILKVLHELDNSTIESVICAPFKS-FLKDLT---------GLKQMVEQVVDFEAIERGE 465
Query: 602 LLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL---GMRNLEFMSVSGITHLI 658
L + + + E+ + + S EEL C ++L G ++ SV+ + H
Sbjct: 466 YL-VKASFDSRLMELQQMMTELYSKMEELQF---KCSQELNLDGKNQVKLESVAKLGHHF 521
Query: 659 ELPANFKVPL----NWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLK 714
+ L N+ V+ K +R+ S ++ D+ A + + +
Sbjct: 522 RITVKDDSVLRKNKNYRIVDVIKGGVRFTSDKLEGYADEFASCRTRYEEQQLSIVEEIIH 581
Query: 715 EFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVL 772
GY A +R+ +VRP +++ ++ + RHP L
Sbjct: 582 VAVGYAAPLTLLNNELAQLDCLVSFAIAARSAPTPYVRPKMLEEGAR-ELVLEDVRHPCL 640
Query: 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAEL 832
+ NF+ N + E IITGPNMGGKS YIR V +MA +G+FVP S A +
Sbjct: 641 ELQEHVNFIANSVDFKKEECNMFIITGPNMGGKSTYIRSVGTAVLMAHIGAFVPCSLATI 700
Query: 833 HVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAI 892
++D I R+GASD+I +G STF+ E+ E S I+R T +SLVI+DELGRGTST++G I
Sbjct: 701 SMVDSILGRVGASDNIIKGLSTFMVEMIETSGIIRTATDKSLVIIDELGRGTSTYEGCGI 760
Query: 893 AYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD 952
A++ ++L + KC LF TH+ +I TK ++ T ++ + + D D
Sbjct: 761 AWSIAEHLAKETKCFTLFATHFHEI----TKLAETLSTVKNCHMAA---VADAD-----D 808
Query: 953 VTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLV 1012
T LY+V GV E SFG +VA+LA P + A + + E E + Q + K LL
Sbjct: 809 FTLLYQVRSGVMEKSFGIQVARLANFPEHVVQNAQEVYNEFEDEHVDK-QKKEDKA-LLE 866
Query: 1013 KLS---DQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNLKFATHD 1060
K+ Q A N+ ++ E + ++D+ D F ++ AT +
Sbjct: 867 KIQVAIQQLSTAGNNVDINVEDLTQLVTQFTKDIEQLDSDYFKSV-LATSE 916
Score = 81 (33.6 bits), Expect = 4.6e-44, Sum P(2) = 4.6e-44
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRT 477
++L +++H T G RL+ +WV PL RN+++ R + V + ES + T
Sbjct: 326 SVLGVLDHCRTPQGHRLMGQWVKQPLRSRNILNDRHNIVQCLLESPDTMET 376
>UNIPROTKB|Q5B374 [details] [associations]
symbol:AN5006.2 "Putative uncharacterized protein"
species:227321 "Aspergillus nidulans FGSC A4" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000735 "removal of nonhomologous ends" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007720 InterPro:IPR007860
InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624 Pfam:PF05024
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0016021 GO:GO:0005524
GO:GO:0003684 GO:GO:0030466 GO:GO:0006506 EMBL:AACD01000084
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 GO:GO:0017176
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
OrthoDB:EOG4S7NZ5 GO:GO:0000735 RefSeq:XP_662610.1
ProteinModelPortal:Q5B374 STRING:Q5B374 GeneID:2872806
KEGG:ani:AN5006.2 Uniprot:Q5B374
Length = 1644
Score = 468 (169.8 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 102/258 (39%), Positives = 153/258 (59%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHP ++ +F+ ND +L + IITGPNMGGKS YIR + +I +MAQ+G FVP
Sbjct: 634 RHPCMEMQDDISFITNDVSLIRDESSFLIITGPNMGGKSTYIRMIGVIALMAQIGCFVPC 693
Query: 828 SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTH 887
+ AEL + D I R+GASDS +G STF+ E+ E S IL++ T++SL+I+DELGRGTST+
Sbjct: 694 TEAELTIFDCILARVGASDSQLKGVSTFMAEMLETSNILKSATSESLIIIDELGRGTSTY 753
Query: 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHV-SYLTSHKVMGPMD 946
DG +A+A ++++ +C LF TH+ ++ + ++ SV HV +++ D
Sbjct: 754 DGFGLAWAISEHIVTEIRCFGLFATHFHELTTLADRYPKSVKNLHVVAFIGDGTTANEED 813
Query: 947 SKSD----QDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQ 1002
K Q VT LY+V PG+ + SFG VA+L + P ++ A A +LE S+
Sbjct: 814 EKEKRKTRQKVTLLYRVEPGICDQSFGIHVAELVRFPEKVVNMARQKAEELEDFTSADSA 873
Query: 1003 NRSAKRDLLVKLSDQEQE 1020
+A + K S +E E
Sbjct: 874 GNAASATI-DKYSQEEVE 890
Score = 93 (37.8 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISAR 461
M L A L+ L ++ +GS+ +L ++NH T GSRLL +W+ PL D I R
Sbjct: 296 MKLDAAALRALNLMPGPRDGSKSMSLFGLLNHCKTPVGSRLLAQWLKQPLMDLAEIEKR 354
Score = 40 (19.1 bits), Expect = 1.6e-43, Sum P(3) = 1.6e-43
Identities = 30/103 (29%), Positives = 43/103 (41%)
Query: 544 KQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLL 603
K+L QL D K ++ L + K+L L + V G +L T N EA G +
Sbjct: 479 KKLDQLRHDMYLEHKAVARDLDQEMDKKLFL--ENHRVYGWCFRL--TRN-EA---GCIR 530
Query: 604 NLMIIS--NGQFSEVARARKAVQSAKEELDSLI-NMCRKQLGM 643
N + Q + V +QS + E D L N R Q G+
Sbjct: 531 NKKAYQECSTQKNGVYFTTSTMQSLRREHDQLSSNYNRTQTGL 573
Score = 37 (18.1 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 500 YILSSVLTSLGRS-----PDIQRGIT--RIFHRTA 527
Y +SVL +LGRS P + IT R F R A
Sbjct: 57 YKTTSVLRNLGRSETGGLPSVTMSITVFRNFLREA 91
>RGD|1309190 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000793 "condensed chromosome" evidence=ISO] [GO:0000794
"condensed nuclear chromosome" evidence=ISO] [GO:0000795
"synaptonemal complex" evidence=ISO;IBA] [GO:0001541 "ovarian
follicle development" evidence=IEA;ISO] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0007126 "meiosis" evidence=ISO] [GO:0007129
"synapsis" evidence=ISO] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007283 "spermatogenesis"
evidence=IEA;ISO] [GO:0007292 "female gamete generation"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008150 "biological_process" evidence=ND]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 RGD:1309190 GO:GO:0005524 GO:GO:0007283 GO:GO:0006298
GO:GO:0001541 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
GeneTree:ENSGT00550000074897 Gene3D:3.30.420.110 SUPFAM:SSF48334
SUPFAM:SSF53150 IPI:IPI00870836 Ensembl:ENSRNOT00000014106
Uniprot:F1M9U4
Length = 958
Score = 430 (156.4 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 99/265 (37%), Positives = 152/265 (57%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++VRP F D + I G HP+L+ I + V N+T + E IITGPNM GKS
Sbjct: 656 DYVRPEFTDT-----LAIKQGWHPILEKISAEKPVANNTYI-TEGSNVLIITGPNMSGKS 709
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
+++Q+AL IMAQ+GSFVPA A + I+TR+ D I+ STF++E+ E +YIL
Sbjct: 710 TFLKQIALCQIMAQIGSFVPAQYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYIL 769
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
N +SL+++DELGRGT+T +G I+YA ++LL K LF TH+ ++ I T +
Sbjct: 770 HNANDKSLILIDELGRGTNTEEGTGISYAVCEHLLS-TKAFTLFTTHFLELCHIDTLYL- 827
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESS-FGFKVAQLAQLPPSCISR 985
+V H + H V S++ + Y YK+ G++E +G K A+ + LPPS +
Sbjct: 828 NVENMH--FEVQH-VKNT--SRNKDAILYTYKLSRGLTEEKHYGLKAAEASSLPPSIVLD 882
Query: 986 ATVIAAKLEAEVSSRVQNRSAKRDL 1010
A I ++ ++S QNR + ++
Sbjct: 883 AREITTQITRQIS---QNRRSSPEM 904
Score = 115 (45.5 bits), Expect = 1.7e-43, Sum P(2) = 1.7e-43
Identities = 28/77 (36%), Positives = 42/77 (54%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D IS RLD
Sbjct: 334 IDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDC 393
Query: 465 VSEIAESMGSYRTSESV 481
V E+ + + +SV
Sbjct: 394 VQELLQDEELFYGLQSV 410
Score = 39 (18.8 bits), Expect = 1.6e-35, Sum P(2) = 1.6e-35
Identities = 24/136 (17%), Positives = 55/136 (40%)
Query: 510 GRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSK----TLH 565
G +P + T PS +AV++ A ++ ID + + + S+ T +
Sbjct: 157 GWTPQVGLSATSSAVSAHAPSVIVAVVEGRGLARGEIGMASIDLKSPQIMLSQFADNTTY 216
Query: 566 SALLKRL-------ILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVAR 618
+ ++ +L I+ +++ V+G + KL + + + + +N + F+E
Sbjct: 217 AKVITKLQVLSPLEIIMSNTACVVGNSTKLFTLITENFKN----VNFTTVQRKYFNETKG 272
Query: 619 ARKAVQSAKEELDSLI 634
Q E S++
Sbjct: 273 LEYIEQLCIAEFSSVL 288
Score = 37 (18.1 bits), Expect = 2.5e-35, Sum P(2) = 2.5e-35
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 673 VNSTKKTIRYHSPEVLTAL-DQLALANEEL 701
+++T + H+P V+ A+ + LA E+
Sbjct: 164 LSATSSAVSAHAPSVIVAVVEGRGLARGEI 193
>CGD|CAL0001526 [details] [associations]
symbol:MSH2 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0032302 "MutSbeta complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0032301
"MutSalpha complex" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000404 "loop DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IEA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IEA] [GO:0032138 "single base insertion or deletion
binding" evidence=IEA] [GO:0000403 "Y-form DNA binding"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0000400 "four-way junction DNA binding" evidence=IEA]
[GO:0006311 "meiotic gene conversion" evidence=IEA] [GO:0030466
"chromatin silencing at silent mating-type cassette" evidence=IEA]
[GO:0000735 "removal of nonhomologous ends" evidence=IEA]
[GO:0000710 "meiotic mismatch repair" evidence=IEA] [GO:0043570
"maintenance of DNA repeat elements" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 CGD:CAL0001526 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AACQ01000086 EMBL:AACQ01000085
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08735 RefSeq:XP_715402.1
RefSeq:XP_715472.1 ProteinModelPortal:Q5A102 STRING:Q5A102
GeneID:3642853 GeneID:3642939 KEGG:cal:CaO19.10605
KEGG:cal:CaO19.3093 Uniprot:Q5A102
Length = 873
Score = 460 (167.0 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 105/284 (36%), Positives = 168/284 (59%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++ +P +I++ RHP+L+ NF+ ND + + ++ IITGPNMGGKS
Sbjct: 585 SYTQPKLFPFESSRKINLIESRHPLLEVQDDINFISNDVKM--DDKHFAIITGPNMGGKS 642
Query: 807 CYIRQVALIGIMAQVGSFVPASS-AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
YIRQ+ I +MAQVGSF+PA+ AEL + D I +R+GA DS +G STF+ E+ E S I
Sbjct: 643 TYIRQIGTIALMAQVGSFIPANDGAELPIFDAILSRVGAGDSQLKGLSTFMIEMLETSSI 702
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
L TA SL+I+DELGRGTST+DG +A+A + L++ +KC +F TH+ +++ + K+
Sbjct: 703 LATATANSLIIIDELGRGTSTYDGFGLAWAISEELIK-RKCFAVFATHFHELSQLSEKYD 761
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
G V L M ++++D+T +YKV PG+S +SFG VA+ +P ++
Sbjct: 762 G------VENLNL------MAEQTNEDITLIYKVGPGISNTSFGISVAEKLHMPEKIVNM 809
Query: 986 ATVIAAKLEAEVSSRVQ-NRSAKRDLLVKLSDQEQEAQENMPVS 1028
A +L E + Q + + R+ + +L + +E + N ++
Sbjct: 810 AKRKVEELSEEPPIKKQCSETEVREGMSRLREILKEWRNNPEIN 853
Score = 83 (34.3 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M L ++T++ L +L N + + T + + T+ GSRLL +W+ PL D +LI R
Sbjct: 275 MKLDSSTMKALNILPNGTQKAI--TSIFELFKCKTLGGSRLLSQWLKQPLIDLSLIEERQ 332
Query: 463 DAVSEIAE 470
+ V + +
Sbjct: 333 ELVKAMID 340
Score = 46 (21.3 bits), Expect = 7.4e-40, Sum P(2) = 7.4e-40
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 661 PANFKVPLNWAKVNSTKKTIRYHS 684
P NFK LN+ N K + YHS
Sbjct: 79 PQNFKESLNYCLQNHFKVEV-YHS 101
Score = 39 (18.8 bits), Expect = 2.7e-43, Sum P(3) = 2.7e-43
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 336 DTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFR 395
D+LS D + D + + S+I I + V +A +I HL +F + S
Sbjct: 116 DSLSEEFDIDFDFRDGSS--SSIAAIKLGNKVGVCVIADSIVHLSEFEDNELYSNLESLL 173
Query: 396 SLSGSMEMTLSAN 408
G E+ + AN
Sbjct: 174 IQLGVKEVVIPAN 186
>ZFIN|ZDB-GENE-040426-2932 [details] [associations]
symbol:msh2 "mutS homolog 2 (E. coli)"
species:7955 "Danio rerio" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0032301 "MutSalpha complex" evidence=IEA;IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA;ISS] [GO:0032302 "MutSbeta complex"
evidence=IEA;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IGI;IDA] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0010224 "response to UV-B" evidence=IBA] [GO:0031573 "intra-S
DNA damage checkpoint" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0045190 "isotype switching" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0045128 "negative
regulation of reciprocal meiotic recombination" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0042771 "intrinsic apoptotic
signaling pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0006311 "meiotic gene conversion" evidence=IBA] [GO:0016446
"somatic hypermutation of immunoglobulin genes" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IMP]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
ZFIN:ZDB-GENE-040426-2932 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0045190 GO:GO:0010165 GO:GO:0010224
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0031573 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 HOVERGEN:HBG006399
HSSP:P23909 EMBL:AF412833 IPI:IPI00509799 UniGene:Dr.105564
ProteinModelPortal:Q90XA7 SMR:Q90XA7 STRING:Q90XA7
InParanoid:Q90XA7 ArrayExpress:Q90XA7 Uniprot:Q90XA7
Length = 936
Score = 443 (161.0 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 103/254 (40%), Positives = 149/254 (58%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
F+RP ++ ++ + + RHP ++ F+PND + + IITGPNMGGKS
Sbjct: 619 FIRPKILEKGSG-RLVLKAARHPCVEAQDEVAFIPNDVTFISGEKMFHIITGPNMGGKST 677
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQV +I +MAQ+G FVP AEL V+D + R+GA DS +G STF+ E+ E + ILR
Sbjct: 678 YIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQIKGVSTFMAEMLETAAILR 737
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ + SL+I+DELGRGTST+DG +A+A +Y+ K LF TH+ ++ + + +
Sbjct: 738 SASEDSLIIIDELGRGTSTYDGFGLAWAISEYIATRLKSFCLFATHFHELTALAQQVP-T 796
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V HV+ LT+ D +T LYKV GV + SFG VA+LA P I+ A
Sbjct: 797 VRNLHVTALTT-----------DSTLTMLYKVKKGVCDQSFGIHVAELASFPKHVIANAR 845
Query: 988 VIAAKLEA--EVSS 999
A +LE ++SS
Sbjct: 846 EKALELEEFQDISS 859
Score = 97 (39.2 bits), Expect = 4.1e-43, Sum P(2) = 4.1e-43
Identities = 31/108 (28%), Positives = 50/108 (46%)
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME--MTLSANTLQQLEVLRNNSNGSE 424
+A+ L IR+L+ E SF+ + + M L +Q L + + + + +
Sbjct: 265 IAMSCLEAVIRYLELLADEANF---GSFKMTTFDLNQYMRLDNAAVQALNLFQGSCDDAT 321
Query: 425 YGT--LLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
GT L ++N T G RL+ +W+ PL D+N I RLD V E
Sbjct: 322 -GTHSLAGLLNKCRTPQGQRLVNQWIKQPLIDKNKIEERLDLVETFVE 368
Score = 39 (18.8 bits), Expect = 5.0e-37, Sum P(2) = 5.0e-37
Identities = 9/37 (24%), Positives = 18/37 (48%)
Query: 78 TPSSQTTHNKKYTPLEQQVVELKTKYPDVLLMIEVGY 114
T S ++ N++YT ++ E + ++ I GY
Sbjct: 552 TNSKLSSLNEEYTKSREEYEEAQNAIVKEIISIAAGY 588
>DICTYBASE|DDB_G0275999 [details] [associations]
symbol:msh1 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=ISS;IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0275999
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GenomeReviews:CM000151_GR
EMBL:AAFI02000013 GO:GO:0006298 GO:GO:0008094 GO:GO:0043504
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 SUPFAM:SSF53150 GO:GO:0032300
GO:GO:0032139 OMA:ITQTVRD RefSeq:XP_643371.1 STRING:Q552L1
EnsemblProtists:DDB0232360 GeneID:8620254 KEGG:ddi:DDB_G0275999
InParanoid:Q552L1 ProtClustDB:CLSZ2729174 Uniprot:Q552L1
Length = 898
Score = 440 (159.9 bits), Expect = 6.9e-43, Sum P(2) = 6.9e-43
Identities = 162/631 (25%), Positives = 301/631 (47%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
M + +T+Q LE+ + G + G+LL ++ T+T G RLL + P + I++RL
Sbjct: 318 MFIDYSTMQSLEITKTYQ-GDKKGSLLESIDKTITPQGGRLLFSRIQSPSLELKEINSRL 376
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + Y N ++T + V + L DI+R I R+
Sbjct: 377 NQLEFF------YN-----------NMELT----------NEVRSFLNAGSDIERCIQRL 409
Query: 523 FHRTATPSEFIAV---MQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSP 579
+ P + + +Q+I + + LQ + + E+ S ++ LLK + T +P
Sbjct: 410 KINKSGPRDLHTIGSTLQSIFHLKESLQSKLLTMKINEQTES--INQLLLK-IQQTHLTP 466
Query: 580 AVIGKAAKLLSTVNKEAADQGDLLNLMIISN-GQFSEVARARKA-VQSAKEELDSLINMC 637
+ +A L+ + + + G + ++ ++R A + +E + + +
Sbjct: 467 LLNHLSAALIDSPPSISVNDGGFIKEGYSKELDRYKLISRNSDALINEFRETYRNKLKIP 526
Query: 638 RKQLGMRNL--EFMSVSGITHLIELPANF---KVPLNWAKVNST-----KKTIRYHSPEV 687
+ ++ ++ ++ +S + ++P NF + L+ + S+ + I + +V
Sbjct: 527 KLKVNKNSIIGYYIEISS-SDRDKIPLNFIHIQTLLSVMRFKSSDLIILEDEINRAASKV 585
Query: 688 LTALDQLALANEELTIVCRAAWDSFLKEFGGYYA--EFXXXXXXXXXXXXXXXXXXXSRN 745
L QL +L VC+ + + +K+ A + + N
Sbjct: 586 LEYEIQLYYVLVDL--VCK--YSNEIKQVSSVIANLDISTSLAKISKQRRYIKPILVNNN 641
Query: 746 KNFVRPVFVD----DHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQI--ITG 799
N + VD D++ + + I GRHP ++ + F+ ND L+ + + ITG
Sbjct: 642 NNNNNNIVVDNDNNDNDRLILDIKDGRHPTVENSTTE-FIGNDLQLNKGIDDANLWLITG 700
Query: 800 PNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEEL 859
PNMGGKS ++RQ ALI +MAQ+GSFVPAS A++ ++D I++R+G+SD + +STF+ E+
Sbjct: 701 PNMGGKSTFLRQNALIILMAQMGSFVPASYAKIGIVDAIFSRVGSSDDLSNDKSTFMVEM 760
Query: 860 NEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919
E + IL+ T +S VI+DE+GRGTST DG++IA + ++YL + +C LF THY ++
Sbjct: 761 VETASILKKATNRSFVIMDEVGRGTSTLDGISIAQSVVEYLNQVNRCRTLFATHYHEL-- 818
Query: 920 IKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD-VTYLYKVVPGVSESSFGFKVAQLAQL 978
TK T H+ + + D+D + + +K+VPG+S S+G A++A +
Sbjct: 819 --TKNLDE--TPHIKCYC-------LAIQEDEDEILFTHKIVPGMSNKSYGIFCAKMAGI 867
Query: 979 PPSCISRATVIAAKLEAEVSSRVQNRSAKRD 1009
P S + R+ I +LE+ K++
Sbjct: 868 PNSVLERSKSILFELESNNKLNFNKNKIKKN 898
Score = 97 (39.2 bits), Expect = 6.9e-43, Sum P(2) = 6.9e-43
Identities = 23/85 (27%), Positives = 40/85 (47%)
Query: 94 QQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYA-------HLDHNFMTASIP 146
+Q K KYP+ +L +G + F EDA++A+ +LGI + + +P
Sbjct: 2 EQYSGFKKKYPNEILFFRLGDFYEMFDEDAKIASNLLGITLTSRKQGKNRNREIPMCGVP 61
Query: 147 TFRLNVHVRRLVNAGFKVGVVKQTE 171
+ +H+ +LV G V + Q E
Sbjct: 62 SHSAEIHIAKLVKLGKSVAICDQVE 86
>UNIPROTKB|Q7R8N0 [details] [associations]
symbol:PY07191 "DNA mismatch repair protein msh2"
species:73239 "Plasmodium yoelii yoelii" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0003684 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
HSSP:P23909 EMBL:AABL01002579 RefSeq:XP_727998.1
ProteinModelPortal:Q7R8N0 STRING:Q7R8N0 GeneID:3800207
KEGG:pyo:PY07191 EuPathDB:PlasmoDB:PY07191 Uniprot:Q7R8N0
Length = 593
Score = 461 (167.3 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 106/278 (38%), Positives = 164/278 (58%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTIL-LDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRP V + E V + RHP+L+ + NF+PND +++ + I+TGPNMGGKS
Sbjct: 292 YVRPALVKNGENVIMK--KSRHPLLELQHNISNFIPNDIHMNKNKSRLIIVTGPNMGGKS 349
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
YIRQ+A+I I+AQ+G FVP E+ + I R+GASD +G STFL E+ EAS I+
Sbjct: 350 TYIRQIAIICILAQIGMFVPCDFCEIPIFTQIMCRVGASDFQLKGISTFLSEMIEASAII 409
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
+N SL+IVDELGRGTST++G+ I+++ Y+L++ KC LF TH+ ++++I + G
Sbjct: 410 KNADNNSLIIVDELGRGTSTYEGLGISWSIGKYILDNIKCFCLFATHFHEMSNIAYQCEG 469
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
+ H+ + +D K+ + + +LY++ G S S+G VA++A+LP I +A
Sbjct: 470 VINR-HIETI--------IDQKNKK-ICFLYEIKDGASNKSYGVNVAEIAKLPKDVIQKA 519
Query: 987 TVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQEN 1024
K+E E+ S K L + S E +N
Sbjct: 520 Y---EKVE-ELESAENKYYLKEKLNIDTSSSTNEKYKN 553
>MGI|MGI:101816 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000228 "nuclear chromosome" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IGI] [GO:0002204 "somatic recombination of immunoglobulin
genes involved in immune response" evidence=IGI] [GO:0003677 "DNA
binding" evidence=ISO;IMP] [GO:0003684 "damaged DNA binding"
evidence=IMP] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IC;IDA] [GO:0006119 "oxidative
phosphorylation" evidence=IMP] [GO:0006200 "ATP catabolic process"
evidence=ISO;IMP] [GO:0006281 "DNA repair" evidence=ISO;IMP]
[GO:0006298 "mismatch repair" evidence=IGI;ISO;IDA;IMP] [GO:0006301
"postreplication repair" evidence=ISO;IMP] [GO:0006302
"double-strand break repair" evidence=IMP] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006915 "apoptotic process"
evidence=IGI;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] [GO:0007049 "cell cycle" evidence=IEA] [GO:0007050
"cell cycle arrest" evidence=IMP] [GO:0007281 "germ cell
development" evidence=IMP] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0008584 "male gonad development" evidence=IMP]
[GO:0010165 "response to X-ray" evidence=IMP] [GO:0010224 "response
to UV-B" evidence=IMP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IGI;IMP] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=IGI;IMP]
[GO:0016887 "ATPase activity" evidence=IMP] [GO:0019237
"centromeric DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=IMP] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0030183 "B cell differentiation" evidence=IMP] [GO:0030983
"mismatched DNA binding" evidence=IMP] [GO:0031573 "intra-S DNA
damage checkpoint" evidence=IGI] [GO:0032137 "guanine/thymine
mispair binding" evidence=ISO;IDA] [GO:0032138 "single base
insertion or deletion binding" evidence=IBA] [GO:0032301 "MutSalpha
complex" evidence=ISO;IDA] [GO:0032302 "MutSbeta complex"
evidence=ISO;IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0042803 "protein homodimerization activity"
evidence=ISO] [GO:0043066 "negative regulation of apoptotic
process" evidence=IMP] [GO:0043524 "negative regulation of neuron
apoptotic process" evidence=IMP] [GO:0043570 "maintenance of DNA
repeat elements" evidence=ISO;IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IMP] [GO:0045910 "negative regulation
of DNA recombination" evidence=ISO;IMP] [GO:0051096 "positive
regulation of helicase activity" evidence=ISO] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007860
InterPro:IPR007861 InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 MGI:MGI:101816
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357 GO:GO:0032142
GO:GO:0032143 GO:GO:0051096 EMBL:X81143 EMBL:U21011 EMBL:BC047117
IPI:IPI00118158 PIR:S53608 RefSeq:NP_032654.1 UniGene:Mm.4619
ProteinModelPortal:P43247 SMR:P43247 IntAct:P43247 STRING:P43247
PhosphoSite:P43247 PaxDb:P43247 PRIDE:P43247
Ensembl:ENSMUST00000024967 GeneID:17685 KEGG:mmu:17685
InParanoid:P43247 NextBio:292252 Bgee:P43247 CleanEx:MM_MSH2
Genevestigator:P43247 GermOnline:ENSMUSG00000024151 Uniprot:P43247
Length = 935
Score = 443 (161.0 bits), Expect = 8.5e-42, Sum P(3) = 8.5e-42
Identities = 153/504 (30%), Positives = 236/504 (46%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAGKQLQQLHIDGEYREKVTSKTLHS 566
L R PD+ R + + F R A A +Q LY G + QL + EK + H
Sbjct: 381 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQG--INQLPSVIQALEKYEGR--HQ 429
Query: 567 ALLKRLILTA--SSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAV 623
ALL + +T + K +++ T D + N + F ++ R+ +
Sbjct: 430 ALLLAVFVTPLIDLRSDFSKFQEMIETT----LDMDQVENHEFLVKPSFDPNLSELREVM 485
Query: 624 QSAKEELDS-LINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKV---NSTKKT 679
++++ S LIN R LG+ + + + + F+V KV N T
Sbjct: 486 DGLEKKMQSTLINAARG-LGLDPGKQIKLDSSA---QFGYYFRVTCKEEKVLRNNKNFST 541
Query: 680 IRYHSPEVLTALDQLALANEELTI---VCRAAWDSFLKEF----GGYYAEFXXXXXXXXX 732
+ V +L+ NEE T A D+ +KE GY
Sbjct: 542 VDIQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAH 601
Query: 733 XXXXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAE 790
S +VRPV ++ + +I + + RH ++ F+PND + +
Sbjct: 602 LDAIVSFAHVSNAAPVPYVRPVILEKGKG-RIILKASRHACVEVQDEVAFIPNDVHFEKD 660
Query: 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
++ IITGPNMGGKS YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK 720
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A DY+ +F
Sbjct: 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISDYIATKIGAFCMF 780
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
TH+ ++ + + +V HV+ LT+ ++ +T LY+V GV + SFG
Sbjct: 781 ATHFHELTALANQIP-TVNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGI 828
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
VA+LA P I+ A A +LE
Sbjct: 829 HVAELANFPRHVIACAKQKALELE 852
Score = 92 (37.4 bits), Expect = 8.5e-42, Sum P(3) = 8.5e-42
Identities = 25/80 (31%), Positives = 41/80 (51%)
Query: 392 ASFRSLSGSMEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
A+F S M++ ++A L + ++ GS+ +L ++N T G RL+ +W+
Sbjct: 292 ATF-DFSQYMKLDMAAVRALNLFQGSVEDTTGSQ--SLAALLNKCKTAQGQRLVNQWIKQ 348
Query: 451 PLCDRNLISARLDAVSEIAE 470
PL DRN I RL+ V E
Sbjct: 349 PLMDRNRIEERLNLVEAFVE 368
Score = 37 (18.1 bits), Expect = 8.5e-42, Sum P(3) = 8.5e-42
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 EDTLSNNEDQNMDVPEQGNHRSAIEG 360
ED L N D + V G + ++G
Sbjct: 132 EDILFGNNDMSASVGVMGIKMAVVDG 157
>UNIPROTKB|F1PM37 [details] [associations]
symbol:MSH2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0032302 "MutSbeta complex" evidence=IEA]
[GO:0032301 "MutSalpha complex" evidence=IEA] [GO:0030983
"mismatched DNA binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GO:GO:0032301 KO:K08735 OMA:WAISEHI GO:GO:0032302 CTD:4436
GeneTree:ENSGT00550000074867 EMBL:AAEX03007498 EMBL:AAEX03007499
EMBL:AAEX03007500 RefSeq:XP_538482.2 Ensembl:ENSCAFT00000004191
GeneID:494002 KEGG:cfa:494002 Uniprot:F1PM37
Length = 934
Score = 438 (159.2 bits), Expect = 9.4e-42, Sum P(3) = 9.4e-42
Identities = 145/504 (28%), Positives = 239/504 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAGKQLQQLHIDGEYREKVTSKTLHS 566
L R PD+ R + + F R A A +Q LY G + QL EK K H
Sbjct: 381 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQG--INQLPNVIRALEKYEGK--HQ 429
Query: 567 ALLKRLILTA--SSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAV 623
LL + +T + K +++ T D + N + F ++ R+ +
Sbjct: 430 GLLLAVFVTPLIDLRSDFSKFQEMIETT----LDMDQVENHEFLVKPSFDPNLSELREIM 485
Query: 624 QSAKEELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL----NWAKVNST 676
++++ S + + LG+ + ++ S + + + + L N++ V+
Sbjct: 486 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEF----GGYYAEFXXXXXXXXX 732
K +++ + + LT+L++ N+ A D+ +KE GY
Sbjct: 546 KNGVKFTNSK-LTSLNEEYTKNKT---EYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 733 XXXXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAE 790
S +VRPV ++ + +I + + RH ++ F+PND + +
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPVILEKGQG-RITLKASRHACVEVQDEVAFIPNDVHFEKD 660
Query: 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
++ IITGPNMGGKS YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK 720
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A +Y+ +F
Sbjct: 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
TH+ ++ + + +V HV+ LT+ ++ +T LY+V GV + SFG
Sbjct: 781 ATHFHELTALANQIP-TVNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGI 828
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
VA+LA P I A A +LE
Sbjct: 829 HVAELANFPRHVIECAKQKALELE 852
Score = 85 (35.0 bits), Expect = 9.4e-42, Sum P(3) = 9.4e-42
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 401 MEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M++ ++A L + ++ GS+ +L ++N T G RL+ +W+ PL D+N I
Sbjct: 300 MKLDIAAVRALNLFQGSVEDTTGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIE 357
Query: 460 ARLDAVSEIAE 470
RL+ V E
Sbjct: 358 ERLNLVEAFVE 368
Score = 49 (22.3 bits), Expect = 9.4e-42, Sum P(3) = 9.4e-42
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 227 GNVGKIRNGVFGDG-FDVRLGVVAVEISTGD 256
GN+ + + +FG+ +GVV V++ST D
Sbjct: 126 GNLSQFEDILFGNNDMSTSIGVVGVKMSTVD 156
Score = 37 (18.1 bits), Expect = 1.7e-40, Sum P(3) = 1.7e-40
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 EDTLSNNEDQNMDVPEQGNHRSAIEG 360
ED L N D + + G S ++G
Sbjct: 132 EDILFGNNDMSTSIGVVGVKMSTVDG 157
>RGD|620786 [details] [associations]
symbol:Msh2 "mutS homolog 2 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000287 "magnesium ion binding" evidence=IEA;ISO] [GO:0000400
"four-way junction DNA binding" evidence=IEA;ISO;IBA] [GO:0000403
"Y-form DNA binding" evidence=IBA] [GO:0000404 "loop DNA binding"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0001701 "in utero embryonic development"
evidence=IEA;ISO] [GO:0002204 "somatic recombination of
immunoglobulin genes involved in immune response" evidence=ISO]
[GO:0003677 "DNA binding" evidence=ISO;ISS] [GO:0003684 "damaged
DNA binding" evidence=ISO;IBA] [GO:0003697 "single-stranded DNA
binding" evidence=IEA;ISO] [GO:0005524 "ATP binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO;IDA]
[GO:0006119 "oxidative phosphorylation" evidence=IEA;ISO]
[GO:0006200 "ATP catabolic process" evidence=ISO] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006298 "mismatch repair"
evidence=IEA;ISO] [GO:0006301 "postreplication repair"
evidence=ISO;ISS;IBA] [GO:0006302 "double-strand break repair"
evidence=IEA;ISO;IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0006915 "apoptotic process" evidence=IEA;ISO]
[GO:0006974 "response to DNA damage stimulus" evidence=ISO]
[GO:0007050 "cell cycle arrest" evidence=IEA;ISO] [GO:0007281 "germ
cell development" evidence=IEA;ISO] [GO:0007283 "spermatogenesis"
evidence=IEP] [GO:0008022 "protein C-terminus binding"
evidence=IEA;ISO] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0008340 "determination of adult lifespan"
evidence=IEA;ISO] [GO:0008584 "male gonad development"
evidence=IEA;ISO] [GO:0010165 "response to X-ray"
evidence=IEA;ISO;IBA] [GO:0010224 "response to UV-B"
evidence=IEA;ISO;IBA] [GO:0014070 "response to organic cyclic
compound" evidence=IEP] [GO:0016446 "somatic hypermutation of
immunoglobulin genes" evidence=IEA;ISO;IBA] [GO:0016447 "somatic
recombination of immunoglobulin gene segments" evidence=ISO]
[GO:0016887 "ATPase activity" evidence=IEA;ISO] [GO:0019237
"centromeric DNA binding" evidence=IEA;ISO] [GO:0019724 "B cell
mediated immunity" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0019901 "protein kinase binding"
evidence=IEA;ISO] [GO:0030183 "B cell differentiation"
evidence=IEA;ISO] [GO:0030983 "mismatched DNA binding"
evidence=ISO] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IEA;ISO;IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IEA;ISO;IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032142 "single guanine
insertion binding" evidence=IEA;ISO] [GO:0032143 "single thymine
insertion binding" evidence=IEA;ISO] [GO:0032181 "dinucleotide
repeat insertion binding" evidence=IEA;ISO] [GO:0032301 "MutSalpha
complex" evidence=IEA;ISO;IBA] [GO:0032302 "MutSbeta complex"
evidence=IEA;ISO;IBA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA;ISO] [GO:0032405 "MutLalpha complex binding"
evidence=IEA;ISO] [GO:0042493 "response to drug" evidence=IEP]
[GO:0042771 "intrinsic apoptotic signaling pathway in response to
DNA damage by p53 class mediator" evidence=IBA] [GO:0042803
"protein homodimerization activity" evidence=IEA;ISO] [GO:0043066
"negative regulation of apoptotic process" evidence=ISO]
[GO:0043200 "response to amino acid stimulus" evidence=IEP]
[GO:0043524 "negative regulation of neuron apoptotic process"
evidence=IEA;ISO] [GO:0043531 "ADP binding" evidence=IEA;ISO]
[GO:0043570 "maintenance of DNA repeat elements"
evidence=IEA;ISO;IBA] [GO:0045128 "negative regulation of
reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=IEA;ISO;IBA] [GO:0045910 "negative
regulation of DNA recombination" evidence=IEA;ISO] [GO:0051096
"positive regulation of helicase activity" evidence=IEA;ISO]
[GO:0003690 "double-stranded DNA binding" evidence=ISO] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=ISO]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
RGD:620786 GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0042493
GO:GO:0000287 GO:GO:0003684 GO:GO:0001701 GO:GO:0043524
GO:GO:0007050 GO:GO:0043531 GO:GO:0007283 GO:GO:0006119
GO:GO:0008584 GO:GO:0019237 GO:GO:0014070 GO:GO:0003697
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 HOGENOM:HOG000196498
KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 CTD:4436
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 GO:GO:0032181 GO:GO:0032357
GO:GO:0032142 GO:GO:0032143 GO:GO:0051096 EMBL:X93591
IPI:IPI00211849 PIR:JC6184 RefSeq:NP_112320.1 UniGene:Rn.3174
ProteinModelPortal:P54275 SMR:P54275 STRING:P54275
PhosphoSite:P54275 PRIDE:P54275 GeneID:81709 KEGG:rno:81709
UCSC:RGD:620786 InParanoid:P54275 NextBio:615336
ArrayExpress:P54275 Genevestigator:P54275
GermOnline:ENSRNOG00000015796 Uniprot:P54275
Length = 933
Score = 441 (160.3 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 148/502 (29%), Positives = 236/502 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAG-KQLQQLHIDGEYREKVTSKTLH 565
L R PD+ R + + F R A A +Q LY G KQL + + EK + H
Sbjct: 381 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQGVKQLPNVI---QALEKYQGR--H 428
Query: 566 SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAVQ 624
ALL + +T + + +K + + D + N + F ++ R+ +
Sbjct: 429 QALLLAVFVTPLTD-LRSDFSKFQEKI-ETTLDMDQVENHEFLVKPSFDPNLSELREVMD 486
Query: 625 SAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKV---NSTKKTIR 681
++++ S + + LG+ + + + + F+V KV N T+
Sbjct: 487 GLEKKMQSTLISAARGLGLDPGKQIKLDSSA---QFGYYFRVTCKEEKVLRNNKNFSTVD 543
Query: 682 YHSPEVLTALDQLALANEELTI---VCRAAWDSFLKEF----GGYYAEFXXXXXXXXXXX 734
V +L+ NEE T A D+ +KE GY
Sbjct: 544 IQKNGVKFTNSELSSLNEEYTKNKGEYEEAQDAIVKEIVNISSGYVEPMQTVNDVLAHLD 603
Query: 735 XXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAERE 792
S +VRPV ++ + +I + + RH ++ F+PND + +++
Sbjct: 604 AVVSFAHVSNAAPVPYVRPVILEKGKG-RIIVKASRHACVEVQHDVAFIPNDVHFEKDKQ 662
Query: 793 YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGR 852
IITGPNMGGKS YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +G
Sbjct: 663 MFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGV 722
Query: 853 STFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT 912
STF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A +Y+ + +F T
Sbjct: 723 STFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATNIGAFCMFAT 782
Query: 913 HYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKV 972
H+ ++ + ++ +V HV+ LT+ ++ +T LY+V GV + SFG V
Sbjct: 783 HFHELTALASQIP-TVNNLHVTALTT-----------EETLTMLYQVKTGVCDQSFGIHV 830
Query: 973 AQLAQLPPSCISRATVIAAKLE 994
A+LA P I A A +LE
Sbjct: 831 AELANFPRHVIECAKQKALELE 852
Score = 86 (35.3 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
Identities = 24/80 (30%), Positives = 40/80 (50%)
Query: 392 ASFRSLSGSMEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
A+F S M++ ++A L + ++ GS+ +L +N T G RL+ +W+
Sbjct: 292 ATF-DFSQYMKLDMAAVRALNLFQGSVEDTTGSQ--SLAAFLNKCKTAQGQRLVSQWIKQ 348
Query: 451 PLCDRNLISARLDAVSEIAE 470
PL D+N I RL+ V E
Sbjct: 349 PLMDKNRIEERLNLVEAFVE 368
>MGI|MGI:1860077 [details] [associations]
symbol:Msh4 "mutS homolog 4 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000793 "condensed chromosome" evidence=IDA] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0000795
"synaptonemal complex" evidence=ISS;IDA] [GO:0001541 "ovarian
follicle development" evidence=IMP] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0007126 "meiosis" evidence=IDA;IMP] [GO:0007129 "synapsis"
evidence=IMP] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007292 "female gamete generation" evidence=IMP] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0030983
"mismatched DNA binding" evidence=IBA] [GO:0045143 "homologous
chromosome segregation" evidence=IBA] [GO:0051026 "chiasma
assembly" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 MGI:MGI:1860077 GO:GO:0005524 GO:GO:0005654
GO:GO:0007283 GO:GO:0006298 Reactome:REACT_120463 GO:GO:0001541
GO:GO:0030983 GO:GO:0007292 GO:GO:0007131 Reactome:REACT_27235
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740 OMA:GFFIQMT
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 CTD:4438
HOGENOM:HOG000290656 HOVERGEN:HBG036910 OrthoDB:EOG4DR9BS
EMBL:AF298655 EMBL:AF178957 IPI:IPI00118045 RefSeq:NP_114076.1
UniGene:Mm.272226 ProteinModelPortal:Q99MT2 SMR:Q99MT2
STRING:Q99MT2 PhosphoSite:Q99MT2 PRIDE:Q99MT2
Ensembl:ENSMUST00000005630 GeneID:55993 KEGG:mmu:55993
InParanoid:Q99MT2 ChiTaRS:MSH4 NextBio:311726 Bgee:Q99MT2
CleanEx:MM_MSH4 Genevestigator:Q99MT2 GermOnline:ENSMUSG00000005493
Uniprot:Q99MT2
Length = 958
Score = 415 (151.1 bits), Expect = 9.6e-42, Sum P(2) = 9.6e-42
Identities = 101/298 (33%), Positives = 163/298 (54%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
++VRP F D + I G HP+L+ I + V N+T + E IITGPNM GKS
Sbjct: 656 DYVRPEFTDT-----LAIKQGWHPILEKISAEKPVANNTYI-TEGSNVLIITGPNMSGKS 709
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
Y++Q+AL IMAQ+GS+VPA A + I+TR+ D I+ STF++E+ E +YIL
Sbjct: 710 TYLKQIALCQIMAQIGSYVPAEYASFRIAAQIFTRISTDDDIETNSSTFMKEMKEIAYIL 769
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
N +SL+++DELGRGT+T +G+ I+YA ++LL K LF TH+ ++ + +
Sbjct: 770 HNANDKSLILIDELGRGTNTEEGIGISYAVCEHLLSIK-AFTLFTTHFLELCHLDALYL- 827
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSES-SFGFKVAQLAQLPPSCISR 985
+V H + H V S++ + Y YK+ G++E ++G K A+ + LP S +
Sbjct: 828 NVENMH--FEVQH-VKNT--SRNKDAILYTYKLSRGLTEEKNYGLKAAEASSLPSSIVLD 882
Query: 986 ATVIAAKLEAEVSSRVQNRSAKRD---LLVKLSDQEQEAQENMPVSPESF--YLGRVE 1038
A I ++ ++ Q S + D + L+ + +A N + P+ YL ++
Sbjct: 883 ARDITTQITRQILQN-QRSSPEMDRQRAVYHLATRLVQAARNSQLEPDRLRTYLSNLK 939
Score = 114 (45.2 bits), Expect = 9.6e-42, Sum P(2) = 9.6e-42
Identities = 26/66 (39%), Positives = 38/66 (57%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
+ +++ Q LE+L NN + TL ++N+T T GSR LR + PL D IS RLD
Sbjct: 334 IDSSSAQNLELLVNNQDYRSNHTLFGVLNYTKTAGGSRRLRSNILEPLVDVETISMRLDC 393
Query: 465 VSEIAE 470
V E+ +
Sbjct: 394 VQELLQ 399
Score = 37 (18.1 bits), Expect = 1.2e-33, Sum P(2) = 1.2e-33
Identities = 17/89 (19%), Positives = 36/89 (40%)
Query: 546 LQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNL 605
L Q + Y + +T + S L I+ +++ V+G + KL + + + + +N
Sbjct: 207 LSQFADNTTYAKVITKLQVLSPLE---IIMSNTACVVGNSTKLFTLITENFKN----VNF 259
Query: 606 MIISNGQFSEVARARKAVQSAKEELDSLI 634
+ F+E Q E S++
Sbjct: 260 TTVQRKYFNETKGLEYIEQLCIAEFSSVL 288
>UNIPROTKB|F1SQH4 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
SUPFAM:SSF48334 GeneTree:ENSGT00550000074867 EMBL:CU928288
RefSeq:XP_003481267.1 Ensembl:ENSSSCT00000009231 GeneID:100739713
KEGG:ssc:100739713 ArrayExpress:F1SQH4 Uniprot:F1SQH4
Length = 450
Score = 436 (158.5 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 97/247 (39%), Positives = 147/247 (59%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
+VRPV ++ + +I + + RH ++ F+PND + +++ IITGPNMGGKS
Sbjct: 135 YVRPVILEKGQG-RITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKST 193
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQ ++ +MAQ+G FVP SAE+ ++D I R+GA DS +G STF+ E+ E + ILR
Sbjct: 194 YIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 253
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ T SL+I+DELGRGTST+DG +A+A +Y+ +F TH+ ++ + + +
Sbjct: 254 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-T 312
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V HV+ LT+ ++ +T LY+V GV + SFG VA+LA P I A
Sbjct: 313 VNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 361
Query: 988 VIAAKLE 994
A +LE
Sbjct: 362 QKALELE 368
Score = 38 (18.4 bits), Expect = 3.6e-41, Sum P(2) = 3.6e-41
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 86 NKKYTPLEQQVVELKTKYPD 105
N K T L ++ + KT+Y +
Sbjct: 69 NSKLTSLNEEYTKNKTEYEE 88
Score = 37 (18.1 bits), Expect = 4.6e-41, Sum P(2) = 4.6e-41
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 409 TLQQLEVLRNNSNGS 423
T ++ +VLRNN N S
Sbjct: 42 TCKEEKVLRNNKNFS 56
>UNIPROTKB|Q3MHE4 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9913
"Bos taurus" [GO:0045190 "isotype switching" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IBA] [GO:0042771 "intrinsic apoptotic signaling
pathway in response to DNA damage by p53 class mediator"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0032301 "MutSalpha complex" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0010224
"response to UV-B" evidence=IBA] [GO:0010165 "response to X-ray"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0006302 "double-strand break repair" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0000406 "double-strand/single-strand DNA junction
binding" evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000400
"four-way junction DNA binding" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0051096 "positive regulation of
helicase activity" evidence=IEA] [GO:0043531 "ADP binding"
evidence=IEA] [GO:0043524 "negative regulation of neuron apoptotic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0032405 "MutLalpha complex binding"
evidence=IEA] [GO:0032357 "oxidized purine DNA binding"
evidence=IEA] [GO:0032181 "dinucleotide repeat insertion binding"
evidence=IEA] [GO:0032143 "single thymine insertion binding"
evidence=IEA] [GO:0032142 "single guanine insertion binding"
evidence=IEA] [GO:0030183 "B cell differentiation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0019237
"centromeric DNA binding" evidence=IEA] [GO:0008584 "male gonad
development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=IEA] [GO:0007281 "germ cell development" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0006119
"oxidative phosphorylation" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] [GO:0001701 "in utero
embryonic development" evidence=IEA] [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0008340 GO:GO:0042771 GO:GO:0000287
GO:GO:0003684 GO:GO:0001701 GO:GO:0043524 GO:GO:0007050
GO:GO:0043531 GO:GO:0006119 GO:GO:0008584 GO:GO:0019237
GO:GO:0003697 GO:GO:0007281 GO:GO:0030183 GO:GO:0006302
GO:GO:0045190 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 GO:GO:0016446
eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 EMBL:BC105268 IPI:IPI00904469
RefSeq:NP_001029756.1 UniGene:Bt.635 ProteinModelPortal:Q3MHE4
SMR:Q3MHE4 STRING:Q3MHE4 PRIDE:Q3MHE4 Ensembl:ENSBTAT00000003556
GeneID:533115 KEGG:bta:533115 CTD:4436 GeneTree:ENSGT00550000074867
HOVERGEN:HBG006399 OrthoDB:EOG4D26P5 NextBio:20875918 GO:GO:0032181
GO:GO:0032357 GO:GO:0032142 GO:GO:0032143 GO:GO:0051096
Uniprot:Q3MHE4
Length = 934
Score = 427 (155.4 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 96/247 (38%), Positives = 145/247 (58%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
+VRPV ++ +I + + RH ++ F+PND + +++ IITGPNMGGKS
Sbjct: 619 YVRPVILEKGRG-RITLKASRHACVEVQDEVAFIPNDVHFEKDKQMFHIITGPNMGGKST 677
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQ ++ +MAQ+G FVP AE+ ++D I R+GA DS +G STF+ E+ E + ILR
Sbjct: 678 YIRQTGVVVLMAQIGCFVPCEWAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 737
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ T SL+I+DELGRGTST+DG +A+A +Y+ +F TH+ ++ + + +
Sbjct: 738 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-T 796
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V HV+ LT+ ++ +T LY+V GV + SFG VA+LA P I A
Sbjct: 797 VNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGIHVAELANFPRHVIECAK 845
Query: 988 VIAAKLE 994
A +LE
Sbjct: 846 QKALELE 852
Score = 86 (35.3 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 21/71 (29%), Positives = 38/71 (53%)
Query: 401 MEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M++ ++A L + +++GS+ +L ++N T G RL+ +W+ PL D+N I
Sbjct: 300 MKLDIAAVRALNLFQGSVEDTSGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIE 357
Query: 460 ARLDAVSEIAE 470
RL+ V E
Sbjct: 358 ERLNLVEAFVE 368
Score = 49 (22.3 bits), Expect = 1.3e-40, Sum P(3) = 1.3e-40
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 227 GNVGKIRNGVFGDG-FDVRLGVVAVEISTGD 256
GN+ + + +FG+ +GVV V++ST D
Sbjct: 126 GNLSQFEDILFGNNDMSASIGVVGVKMSTVD 156
Score = 43 (20.2 bits), Expect = 3.9e-36, Sum P(3) = 3.9e-36
Identities = 24/99 (24%), Positives = 43/99 (43%)
Query: 328 SLYENMGEDTLSNNEDQNMDV---PEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGL 384
S ++ M E TL ++ +N + P + S + IM+ DL + + + + GL
Sbjct: 448 SKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMD--DLEKKMQSTLVSAARDLGL 505
Query: 385 ERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGS 423
+ G + S + T ++ +VLRNN N S
Sbjct: 506 DP----GKQIKLDSSTQFGYYFRVTCKEEKVLRNNKNFS 540
Score = 41 (19.5 bits), Expect = 1.8e-35, Sum P(2) = 1.8e-35
Identities = 50/224 (22%), Positives = 82/224 (36%)
Query: 222 VVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXX 281
++ DD N G+ F ++L + AV ++ G D SG
Sbjct: 279 LLSDDSNFGQFELTTFDFSQYMKLDIAAVRAL--NLFQGSVED---TSGSQSLAALLNKC 333
Query: 282 XXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNN 341
GQ L Q K L R+E R + A E L +N+ ED L
Sbjct: 334 KTPQGQRLVNQWIKQPLM-----DKNRIE--ERLNLVE--AFVEDAELRQNLQEDLLRRF 384
Query: 342 EDQNMDVPEQGNHRSA--------IEGIMNMPDLAVQALA-LTIRHLKQF---GLERIMC 389
D N + ++ ++A +GI +P++ +QAL +H F + ++
Sbjct: 385 PDLNR-LAKKFQRQAANLQDCYRLYQGINQLPNV-IQALEKYEGKHQALFLAVFVTPLID 442
Query: 390 LGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMN 433
L + F +E TL + ++ E L S L IM+
Sbjct: 443 LRSDFSKFQEMIETTLDMDQVENHEFLVKPSFDPNLSELREIMD 486
Score = 38 (18.4 bits), Expect = 1.3e-35, Sum P(3) = 1.3e-35
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 625 SAKEELDSLINMCRKQLGMR 644
S + L +L+N C+ G R
Sbjct: 321 SGSQSLAALLNKCKTPQGQR 340
Score = 38 (18.4 bits), Expect = 3.8e-35, Sum P(2) = 3.8e-35
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 86 NKKYTPLEQQVVELKTKYPD 105
N K T L ++ + KT+Y +
Sbjct: 553 NSKLTSLNEEYTKNKTEYEE 572
Score = 37 (18.1 bits), Expect = 2.3e-39, Sum P(3) = 2.3e-39
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 335 EDTLSNNEDQNMDVPEQGNHRSAIEG 360
ED L N D + + G S ++G
Sbjct: 132 EDILFGNNDMSASIGVVGVKMSTVDG 157
>UNIPROTKB|B1N4L6 [details] [associations]
symbol:EHI_123830 "DNA mismatch repair protein Msh2,
putative" species:5759 "Entamoeba histolytica" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000403 "Y-form DNA binding"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000406 "double-strand/single-strand DNA junction binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006301
"postreplication repair" evidence=IBA] [GO:0006311 "meiotic gene
conversion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032138 "single base insertion or
deletion binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0045128 GO:GO:0000228 GO:GO:0043570
GO:GO:0000403 GO:GO:0006301 GO:GO:0008094 GO:GO:0006311
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 GO:GO:0032302 GO:GO:0000406
GO:GO:0000404 EMBL:DS571433 RefSeq:XP_001914132.1
ProteinModelPortal:B1N4L6 STRING:B1N4L6 GeneID:6220147
KEGG:ehi:EHI_123830 EuPathDB:AmoebaDB:EHI_123830 InParanoid:B1N4L6
ProtClustDB:CLSZ2734733 Uniprot:B1N4L6
Length = 630
Score = 420 (152.9 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 89/252 (35%), Positives = 143/252 (56%)
Query: 745 NKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGG 804
N+ + +P + + + I I RHP+++ +++F+ ND ++ + QIITGPNMGG
Sbjct: 314 NQGYSKPTIYESEKGI-IKIIKARHPLIENNSINSFIENDIDIDRKETRFQIITGPNMGG 372
Query: 805 KSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASY 864
KS Y+R + L IMAQ+G F+P S A + + D I R+GA D+I +G STF+ E+ + S
Sbjct: 373 KSTYLRMIGLCVIMAQIGMFIPCSEAHISICDKIMCRIGAGDNIVEGMSTFMSEMKDTSE 432
Query: 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924
I++ T SLV++DELGRGTST+DG IA+A +YL C +F TH+ +I ++ +
Sbjct: 433 IIKKSTKNSLVLIDELGRGTSTYDGFGIAWAISEYLAIDIGCYCVFATHFHEITGLEKRV 492
Query: 925 TGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCIS 984
TG + HV ++ D+ + YK+ G ++ S VA+ A P +
Sbjct: 493 TGVINK-HVEA----DII-------DKQLVLKYKINNGSTDQSLAIYVAEWADFPHEVVE 540
Query: 985 RATVIAAKLEAE 996
A A +L+ +
Sbjct: 541 SAKRKAKELDLD 552
Score = 82 (33.9 bits), Expect = 1.5e-40, Sum P(2) = 1.5e-40
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMG 473
TL +N T T G ++++ W+ PL D++ I+ RL+ V ++ G
Sbjct: 30 TLFKHLNRTHTKIGEKMIKEWIKQPLIDKDKINKRLELVEGFYDNSG 76
Score = 42 (19.8 bits), Expect = 2.4e-36, Sum P(2) = 2.4e-36
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 84 THNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTA 143
T N K L+ + E+ K+ + + + GYK +F ++ E ++G Y +F T
Sbjct: 256 TLNVKRDKLKLKEEEINKKFIEEINKVVEGYKEKF--QELE---NMIG-YIDCIQSFATV 309
Query: 144 SI 145
SI
Sbjct: 310 SI 311
>DICTYBASE|DDB_G0275809 [details] [associations]
symbol:msh2 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0032302 "MutSbeta complex"
evidence=IEA;ISS;IBA] [GO:0032301 "MutSalpha complex"
evidence=IEA;ISS;IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;ISS] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0042803 "protein
homodimerization activity" evidence=ISS] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0006301 "postreplication repair"
evidence=ISS;IBA] [GO:0006281 "DNA repair" evidence=IEA;ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0045128
"negative regulation of reciprocal meiotic recombination"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0007049 "cell cycle" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF05188 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 dictyBase:DDB_G0275809 GO:GO:0005524 GO:GO:0042803
GO:GO:0003684 GenomeReviews:CM000151_GR EMBL:AAFI02000013
GO:GO:0045128 GO:GO:0000228 GO:GO:0043570 GO:GO:0000403
GO:GO:0006301 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137
GO:GO:0000710 GO:GO:0032301 GO:GO:0032138 KO:K08735 OMA:WAISEHI
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:XP_643399.1
HSSP:P23909 ProteinModelPortal:Q553L4 STRING:Q553L4 PRIDE:Q553L4
EnsemblProtists:DDB0229897 GeneID:8619985 KEGG:ddi:DDB_G0275809
ProtClustDB:CLSZ2430933 Uniprot:Q553L4
Length = 937
Score = 436 (158.5 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 108/262 (41%), Positives = 144/262 (54%)
Query: 748 FVRPVFV---DDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGG 804
F+RP + D I GRHP ++ NF+ ND +L + QIITGPNMGG
Sbjct: 653 FIRPEIIPLGSDENGAGTVIIGGRHPCVEIQDNVNFIANDIDLTRGQSQFQIITGPNMGG 712
Query: 805 KSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASY 864
KS +IRQV LI +MAQ+G FVPA A + V+D I +R+GA DS +G STF+ E+ E SY
Sbjct: 713 KSTFIRQVGLIVLMAQIGCFVPAQKATIAVVDCILSRVGAGDSQLRGVSTFMAEMLETSY 772
Query: 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924
IL+ T SL+I+DELGRGTST+DG +A+ +Y+ LF TH+ ++ I +
Sbjct: 773 ILKVATKNSLIIIDELGRGTSTYDGFGLAWGIAEYICNQIGGFCLFATHFHELT-ILSDL 831
Query: 925 TGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCIS 984
V HVS T + T LYKV G + SFG VA LA P I
Sbjct: 832 LPMVKNLHVSASTQNNTF-----------TLLYKVEQGPCDQSFGIHVAILANFPSQVIE 880
Query: 985 RATVIAAKLEA-EVSSRVQNRS 1005
A A +LE+ E ++ QN +
Sbjct: 881 NAKQKAKELESFESNTLKQNHN 902
Score = 78 (32.5 bits), Expect = 2.4e-40, Sum P(2) = 2.4e-40
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
+S+ ++ +L +++N T GSRLL +WV PL + I ARL+ V
Sbjct: 351 SSSSNKDQSLYNLLNQCNTPMGSRLLLQWVKQPLLNAEEIEARLNFV 397
Score = 38 (18.4 bits), Expect = 3.8e-36, Sum P(2) = 3.8e-36
Identities = 26/90 (28%), Positives = 40/90 (44%)
Query: 566 SALLKRLILTASSPAVIGKAAKL----LSTVNKEAADQGDLLNLMIISNGQFSEVAR--- 618
S L+K L L S+P GK KL L K + L+++ + + S A
Sbjct: 289 SCLIKHLDLL-SNPNYFGKF-KLEKYDLDRYMKLDSSSFKGLHIIDLKDSSVSAAAGGGG 346
Query: 619 ARKAVQSAKEE--LDSLINMCRKQLGMRNL 646
A A S+ ++ L +L+N C +G R L
Sbjct: 347 AGGASSSSNKDQSLYNLLNQCNTPMGSRLL 376
>UNIPROTKB|E9PHA6 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0032301 "MutSalpha complex"
evidence=IEA] [GO:0032302 "MutSbeta complex" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 EMBL:AC079775
SUPFAM:SSF48334 GO:GO:0032301 GO:GO:0032302 EMBL:AC138655
HGNC:HGNC:7325 ChiTaRS:MSH2 IPI:IPI00893933
ProteinModelPortal:E9PHA6 SMR:E9PHA6 Ensembl:ENST00000406134
UCSC:uc002rvz.3 ArrayExpress:E9PHA6 Bgee:E9PHA6 Uniprot:E9PHA6
Length = 921
Score = 432 (157.1 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 144/504 (28%), Positives = 239/504 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAGKQLQQLHIDGEYREKVTSKTLHS 566
L R PD+ R + + F R A A +Q LY G + QL + EK K H
Sbjct: 381 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQG--INQLPNVIQALEKHEGK--HQ 429
Query: 567 ALLKRLILTASSP--AVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAV 623
LL + +T + + K +++ T D + N + F ++ R+ +
Sbjct: 430 KLLLAVFVTPLTDLRSDFSKFQEMIETT----LDMDQVENHEFLVKPSFDPNLSELREIM 485
Query: 624 QSAKEELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL----NWAKVNST 676
++++ S + + LG+ + ++ S + + + + L N++ V+
Sbjct: 486 NDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEF----GGYYAEFXXXXXXXXX 732
K +++ + + LT+L++ N+ A D+ +KE GY
Sbjct: 546 KNGVKFTNSK-LTSLNEEYTKNKT---EYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 733 XXXXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAE 790
S +VRP ++ + +I + + RH ++ F+PND +
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQG-RIILKASRHACVEVQDEIAFIPNDVYFEKD 660
Query: 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
++ IITGPNMGGKS YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK 720
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A +Y+ +F
Sbjct: 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
TH+ ++ + + +V HV+ LT+ ++ +T LY+V GV + SFG
Sbjct: 781 ATHFHELTALANQIP-TVNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGI 828
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
VA+LA P I A A +LE
Sbjct: 829 HVAELANFPKHVIECAKQKALELE 852
Score = 85 (35.0 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 401 MEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M++ ++A L + ++ GS+ +L ++N T G RL+ +W+ PL D+N I
Sbjct: 300 MKLDIAAVRALNLFQGSVEDTTGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIE 357
Query: 460 ARLDAVSEIAE 470
RL+ V E
Sbjct: 358 ERLNLVEAFVE 368
Score = 41 (19.5 bits), Expect = 2.7e-40, Sum P(3) = 2.7e-40
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 335 EDTLSNNEDQNMDVPEQGNHRSAIEG 360
ED L N D + + G SA++G
Sbjct: 132 EDILFGNNDMSASIGVVGVKMSAVDG 157
>UNIPROTKB|P43246 [details] [associations]
symbol:MSH2 "DNA mismatch repair protein Msh2" species:9606
"Homo sapiens" [GO:0001701 "in utero embryonic development"
evidence=IEA] [GO:0006119 "oxidative phosphorylation" evidence=IEA]
[GO:0007050 "cell cycle arrest" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0008340 "determination of adult
lifespan" evidence=IEA] [GO:0019237 "centromeric DNA binding"
evidence=IEA] [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000403 "Y-form DNA binding" evidence=IBA] [GO:0000404 "loop
DNA binding" evidence=IBA] [GO:0000406 "double-strand/single-strand
DNA junction binding" evidence=IBA] [GO:0000710 "meiotic mismatch
repair" evidence=IBA] [GO:0006302 "double-strand break repair"
evidence=IBA] [GO:0006311 "meiotic gene conversion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=ISS;IBA] [GO:0010224
"response to UV-B" evidence=ISS;IBA] [GO:0016446 "somatic
hypermutation of immunoglobulin genes" evidence=IBA] [GO:0031573
"intra-S DNA damage checkpoint" evidence=IBA] [GO:0042771
"intrinsic apoptotic signaling pathway in response to DNA damage by
p53 class mediator" evidence=IBA] [GO:0045128 "negative regulation
of reciprocal meiotic recombination" evidence=IBA] [GO:0045190
"isotype switching" evidence=ISS;IBA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0019901 "protein kinase binding" evidence=IPI]
[GO:0006298 "mismatch repair" evidence=IDA] [GO:0006301
"postreplication repair" evidence=IDA] [GO:0008022 "protein
C-terminus binding" evidence=IPI] [GO:0019899 "enzyme binding"
evidence=IPI] [GO:0003677 "DNA binding" evidence=IDA] [GO:0032137
"guanine/thymine mispair binding" evidence=IDA;IMP] [GO:0032405
"MutLalpha complex binding" evidence=IDA] [GO:0032301 "MutSalpha
complex" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IDA] [GO:0032302 "MutSbeta complex" evidence=IDA]
[GO:0030983 "mismatched DNA binding" evidence=IDA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IDA]
[GO:0032143 "single thymine insertion binding" evidence=IDA]
[GO:0032181 "dinucleotide repeat insertion binding" evidence=IDA]
[GO:0042803 "protein homodimerization activity" evidence=IDA]
[GO:0032142 "single guanine insertion binding" evidence=IDA]
[GO:0032357 "oxidized purine DNA binding" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IMP] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0043531 "ADP binding" evidence=IDA] [GO:0000400
"four-way junction DNA binding" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0019724 "B cell
mediated immunity" evidence=ISS] [GO:0008584 "male gonad
development" evidence=ISS] [GO:0016447 "somatic recombination of
immunoglobulin gene segments" evidence=ISS] [GO:0030183 "B cell
differentiation" evidence=ISS] [GO:0043524 "negative regulation of
neuron apoptotic process" evidence=ISS] [GO:0045910 "negative
regulation of DNA recombination" evidence=ISS;IDA] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0051096 "positive regulation of helicase
activity" evidence=IDA] [GO:0006200 "ATP catabolic process"
evidence=IDA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0008340
GO:GO:0042803 GO:GO:0042771 GO:GO:0042493 GO:GO:0003684
GO:GO:0001701 GO:GO:0043524 GO:GO:0007050 GO:GO:0007283
GO:GO:0006119 GO:GO:0008584 GO:GO:0019237 GO:GO:0014070
GO:GO:0007281 GO:GO:0030183 GO:GO:0006302 GO:GO:0045190
GO:GO:0043200 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 Orphanet:144
GO:GO:0006301 GO:GO:0031573 MIM:608089 GO:GO:0008094 GO:GO:0006311
GO:GO:0016446 EMBL:AC079775 eggNOG:COG0249 SUPFAM:SSF48334
MIM:158320 Orphanet:587 GO:GO:0032137 GO:GO:0000710 GO:GO:0032301
HOGENOM:HOG000196498 KO:K08735 OMA:WAISEHI GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 CTD:4436 HOVERGEN:HBG006399
OrthoDB:EOG4D26P5 GO:GO:0051096 EMBL:U03911 EMBL:U04045 EMBL:U41221
EMBL:U41206 EMBL:U41207 EMBL:U41208 EMBL:U41210 EMBL:U41211
EMBL:U41212 EMBL:U41213 EMBL:U41214 EMBL:U41215 EMBL:U41216
EMBL:U41217 EMBL:U41218 EMBL:U41219 EMBL:U41220 EMBL:L47583
EMBL:L47582 EMBL:L47581 EMBL:AY601851 EMBL:AK304496 EMBL:BX649122
EMBL:AC138655 EMBL:BC021566 EMBL:AF066081 IPI:IPI00017303
IPI:IPI01014700 PIR:I64819 RefSeq:NP_000242.1 UniGene:Hs.597656
PDB:2O8B PDB:2O8C PDB:2O8D PDB:2O8E PDB:2O8F PDB:3THW PDB:3THX
PDB:3THY PDB:3THZ PDBsum:2O8B PDBsum:2O8C PDBsum:2O8D PDBsum:2O8E
PDBsum:2O8F PDBsum:3THW PDBsum:3THX PDBsum:3THY PDBsum:3THZ
ProteinModelPortal:P43246 SMR:P43246 DIP:DIP-35054N IntAct:P43246
MINT:MINT-84789 STRING:P43246 PhosphoSite:P43246 DMDM:1171032
PaxDb:P43246 PeptideAtlas:P43246 PRIDE:P43246 DNASU:4436
Ensembl:ENST00000233146 Ensembl:ENST00000543555 GeneID:4436
KEGG:hsa:4436 UCSC:uc002rvy.1 GeneCards:GC02P047630 HGNC:HGNC:7325
HPA:CAB009572 MIM:120435 MIM:609309 neXtProt:NX_P43246
PharmGKB:PA31133 InParanoid:P43246 PhylomeDB:P43246 ChiTaRS:MSH2
EvolutionaryTrace:P43246 GenomeRNAi:4436 NextBio:17289
ArrayExpress:P43246 Bgee:P43246 CleanEx:HS_MSH2
Genevestigator:P43246 GermOnline:ENSG00000095002 Uniprot:P43246
Length = 934
Score = 432 (157.1 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 144/504 (28%), Positives = 239/504 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAGKQLQQLHIDGEYREKVTSKTLHS 566
L R PD+ R + + F R A A +Q LY G + QL + EK K H
Sbjct: 381 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQG--INQLPNVIQALEKHEGK--HQ 429
Query: 567 ALLKRLILTASSP--AVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAV 623
LL + +T + + K +++ T D + N + F ++ R+ +
Sbjct: 430 KLLLAVFVTPLTDLRSDFSKFQEMIETT----LDMDQVENHEFLVKPSFDPNLSELREIM 485
Query: 624 QSAKEELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL----NWAKVNST 676
++++ S + + LG+ + ++ S + + + + L N++ V+
Sbjct: 486 NDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 545
Query: 677 KKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEF----GGYYAEFXXXXXXXXX 732
K +++ + + LT+L++ N+ A D+ +KE GY
Sbjct: 546 KNGVKFTNSK-LTSLNEEYTKNKT---EYEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQ 601
Query: 733 XXXXXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAE 790
S +VRP ++ + +I + + RH ++ F+PND +
Sbjct: 602 LDAVVSFAHVSNGAPVPYVRPAILEKGQG-RIILKASRHACVEVQDEIAFIPNDVYFEKD 660
Query: 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850
++ IITGPNMGGKS YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +
Sbjct: 661 KQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLK 720
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910
G STF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A +Y+ +F
Sbjct: 721 GVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMF 780
Query: 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGF 970
TH+ ++ + + +V HV+ LT+ ++ +T LY+V GV + SFG
Sbjct: 781 ATHFHELTALANQIP-TVNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGI 828
Query: 971 KVAQLAQLPPSCISRATVIAAKLE 994
VA+LA P I A A +LE
Sbjct: 829 HVAELANFPKHVIECAKQKALELE 852
Score = 85 (35.0 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 21/71 (29%), Positives = 37/71 (52%)
Query: 401 MEMTLSA-NTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M++ ++A L + ++ GS+ +L ++N T G RL+ +W+ PL D+N I
Sbjct: 300 MKLDIAAVRALNLFQGSVEDTTGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIE 357
Query: 460 ARLDAVSEIAE 470
RL+ V E
Sbjct: 358 ERLNLVEAFVE 368
Score = 41 (19.5 bits), Expect = 3.1e-40, Sum P(3) = 3.1e-40
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 335 EDTLSNNEDQNMDVPEQGNHRSAIEG 360
ED L N D + + G SA++G
Sbjct: 132 EDILFGNNDMSASIGVVGVKMSAVDG 157
>UNIPROTKB|F1SQH6 [details] [associations]
symbol:LOC100739713 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074867 EMBL:CU928288 EMBL:FP102206
EMBL:FP476038 Ensembl:ENSSSCT00000009229 OMA:KGACDQS
ArrayExpress:F1SQH6 Uniprot:F1SQH6
Length = 584
Score = 437 (158.9 bits), Expect = 4.4e-40, P = 4.4e-40
Identities = 142/501 (28%), Positives = 238/501 (47%)
Query: 509 LGRSPDIQRGITRIFHRTATPSEFIAVMQAI--LYAGKQLQQLHIDGEYREKVTSKTLHS 566
L R PD+ R + + F R A A +Q LY G + QL + EK + H
Sbjct: 31 LRRFPDLNR-LAKKFQRQA------ANLQDCYRLYQG--INQLPNVIQAMEKYEGQ--HQ 79
Query: 567 ALLKRLILTA--SSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS-EVARARKAV 623
ALL + +T + K +++ T D + N + F ++ R+ +
Sbjct: 80 ALLLAVFVTPLIDLRSDFSKFQEMIETT----LDMDQVENHEFLVKPSFDPNLSELREIM 135
Query: 624 QSAKEELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPANFKVPL----NWAKVNST 676
++++ S + + LG+ + ++ S + + + + L N++ V+
Sbjct: 136 DDLEKKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQ 195
Query: 677 KKTIRYHSPEVLTALDQLALANE-ELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXX 735
K +++ + + LT+L++ N+ E A + GY
Sbjct: 196 KNGVKFTNSK-LTSLNEEYTKNKTEYEEAQNAIVKEIVNISSGYVEPMQTLNDVLAQLDA 254
Query: 736 XXXXXXXSRNKN--FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREY 793
S +VRPV ++ + +I + + RH ++ F+PND + +++
Sbjct: 255 VVSFAHVSNGAPVPYVRPVILEKGQG-RITLKASRHACVEVQDEVAFIPNDVHFEKDKQM 313
Query: 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRS 853
IITGPNMGGKS YIRQ ++ +MAQ+G FVP SAE+ ++D I R+GA DS +G S
Sbjct: 314 FHIITGPNMGGKSTYIRQTGVVVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVS 373
Query: 854 TFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913
TF+ E+ E + ILR+ T SL+I+DELGRGTST+DG +A+A +Y+ +F TH
Sbjct: 374 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATH 433
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
+ ++ + + +V HV+ LT+ ++ +T LY+V GV + SFG VA
Sbjct: 434 FHELTALANQIP-TVNNLHVTALTT-----------EETLTMLYQVKKGVCDQSFGIHVA 481
Query: 974 QLAQLPPSCISRATVIAAKLE 994
+LA P I A A +LE
Sbjct: 482 ELANFPRHVIECAKQKALELE 502
>WB|WBGene00003418 [details] [associations]
symbol:msh-2 species:6239 "Caenorhabditis elegans"
[GO:0006298 "mismatch repair" evidence=IEA;IMP] [GO:0032301
"MutSalpha complex" evidence=IEA;ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032302 "MutSbeta complex" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IMP] [GO:0042771 "intrinsic apoptotic signaling pathway in
response to DNA damage by p53 class mediator" evidence=IMP]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR011184 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 GO:GO:0042771 GO:GO:0003684
GO:GO:0006302 GO:GO:0010165 GO:GO:0010224 GO:GO:0045128
GO:GO:0000228 GO:GO:0043570 GO:GO:0000403 GO:GO:0006301
GO:GO:0031573 GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
HSSP:Q56215 GO:GO:0032301 GO:GO:0032138 KO:K08735 GO:GO:0032302
GO:GO:0000406 GO:GO:0000404 GeneTree:ENSGT00550000074867
OMA:HINERLD EMBL:FO080998 PIR:C87740 RefSeq:NP_491202.1
ProteinModelPortal:Q9TXR4 SMR:Q9TXR4 IntAct:Q9TXR4 MINT:MINT-227660
STRING:Q9TXR4 PaxDb:Q9TXR4 EnsemblMetazoa:H26D21.2.1
EnsemblMetazoa:H26D21.2.2 EnsemblMetazoa:H26D21.2.3 GeneID:171938
KEGG:cel:CELE_H26D21.2 UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2
InParanoid:Q9TXR4 NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 402 (146.6 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 97/244 (39%), Positives = 143/244 (58%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHPV++ F+PND L R I+TG NMGGKS Y+R AL ++AQ+GSFVP
Sbjct: 610 RHPVIEGNSEKPFIPNDVVLDKCRLI--ILTGANMGGKSTYLRSAALSILLAQIGSFVPC 667
Query: 828 SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTH 887
SSA + V+DGI+TR+GASD QG STF+ E+ + S IL+ T S V++DELGRGTST
Sbjct: 668 SSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTF 727
Query: 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDS 947
DG IA A +L +C+ +F TH+ ++ + + G+V MG
Sbjct: 728 DGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAEQ-PGAVALQ----------MGVQIE 776
Query: 948 KSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAK 1007
++ + LYKV GV++ SFG +VA++ + + I++A + LE ++ V + K
Sbjct: 777 NNE--IHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLEKKL---VIDSKKK 831
Query: 1008 RDLL 1011
++LL
Sbjct: 832 KELL 835
Score = 103 (41.3 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYG---TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M + + ++ LE+ + N N E TL +++N T+ G +LLR W++ PLC + I+
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHIN 330
Query: 460 ARLDAVSEIAES 471
RLD V + E+
Sbjct: 331 ERLDIVEALFEN 342
Score = 50 (22.7 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 99 LKTKYPDVLLMIEVGYKFRFFGEDAEMAA 127
LK+K P+ + + G F +G+DA A
Sbjct: 17 LKSKSPNTIAIFSRGEYFSVYGDDATFVA 45
>UNIPROTKB|Q9TXR4 [details] [associations]
symbol:msh-2 "Protein MSH-2" species:6239 "Caenorhabditis
elegans" [GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] [GO:0032302 "MutSbeta complex"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0031573 "intra-S DNA damage checkpoint"
evidence=IBA] [GO:0010224 "response to UV-B" evidence=IBA]
[GO:0010165 "response to X-ray" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0006311 "meiotic
gene conversion" evidence=IBA] [GO:0006302 "double-strand break
repair" evidence=IBA] [GO:0006301 "postreplication repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000403 "Y-form
DNA binding" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000228 "nuclear chromosome"
evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007861 InterPro:IPR011184
Pfam:PF00488 Pfam:PF01624 Pfam:PF05190 Pfam:PF05192
PIRSF:PIRSF005813 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0042771 GO:GO:0003684 GO:GO:0006302
GO:GO:0010165 GO:GO:0010224 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0031573
GO:GO:0008094 GO:GO:0006311 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0000400 GO:GO:0032137 GO:GO:0000710 HSSP:Q56215 GO:GO:0032301
GO:GO:0032138 KO:K08735 GO:GO:0032302 GO:GO:0000406 GO:GO:0000404
GeneTree:ENSGT00550000074867 OMA:HINERLD EMBL:FO080998 PIR:C87740
RefSeq:NP_491202.1 ProteinModelPortal:Q9TXR4 SMR:Q9TXR4
IntAct:Q9TXR4 MINT:MINT-227660 STRING:Q9TXR4 PaxDb:Q9TXR4
EnsemblMetazoa:H26D21.2.1 EnsemblMetazoa:H26D21.2.2
EnsemblMetazoa:H26D21.2.3 GeneID:171938 KEGG:cel:CELE_H26D21.2
UCSC:H26D21.2 CTD:171938 WormBase:H26D21.2 InParanoid:Q9TXR4
NextBio:873327 Uniprot:Q9TXR4
Length = 849
Score = 402 (146.6 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 97/244 (39%), Positives = 143/244 (58%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHPV++ F+PND L R I+TG NMGGKS Y+R AL ++AQ+GSFVP
Sbjct: 610 RHPVIEGNSEKPFIPNDVVLDKCRLI--ILTGANMGGKSTYLRSAALSILLAQIGSFVPC 667
Query: 828 SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTH 887
SSA + V+DGI+TR+GASD QG STF+ E+ + S IL+ T S V++DELGRGTST
Sbjct: 668 SSATISVVDGIFTRVGASDKQSQGISTFMAEMLDCSAILQRATKNSFVVIDELGRGTSTF 727
Query: 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDS 947
DG IA A +L +C+ +F TH+ ++ + + G+V MG
Sbjct: 728 DGFGIASAIAQDILNRIQCLSIFATHFHEMGKLAEQ-PGAVALQ----------MGVQIE 776
Query: 948 KSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAK 1007
++ + LYKV GV++ SFG +VA++ + + I++A + LE ++ V + K
Sbjct: 777 NNE--IHMLYKVFEGVAQCSFGLQVAKMVGIDENVINKAAQLLEGLEKKL---VIDSKKK 831
Query: 1008 RDLL 1011
++LL
Sbjct: 832 KELL 835
Score = 103 (41.3 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYG---TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLIS 459
M + + ++ LE+ + N N E TL +++N T+ G +LLR W++ PLC + I+
Sbjct: 271 MLIDSCAVEALELFQLNYNYLEKSNNLTLYNVLNKCKTLPGEKLLRDWLSRPLCQIDHIN 330
Query: 460 ARLDAVSEIAES 471
RLD V + E+
Sbjct: 331 ERLDIVEALFEN 342
Score = 50 (22.7 bits), Expect = 5.6e-40, Sum P(3) = 5.6e-40
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 99 LKTKYPDVLLMIEVGYKFRFFGEDAEMAA 127
LK+K P+ + + G F +G+DA A
Sbjct: 17 LKSKSPNTIAIFSRGEYFSVYGDDATFVA 45
>CGD|CAL0005874 [details] [associations]
symbol:orf19.496 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IEA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IEA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0043504 "mitochondrial DNA repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0005874 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000055 EMBL:AACQ01000054 eggNOG:COG0249
Gene3D:3.30.420.110 SUPFAM:SSF48334 Gene3D:3.40.1170.10
SUPFAM:SSF55271 HOGENOM:HOG000157750 SUPFAM:SSF53150
RefSeq:XP_717359.1 RefSeq:XP_717448.1 STRING:Q5A6Q9 GeneID:3640907
GeneID:3640972 KEGG:cal:CaO19.496 KEGG:cal:CaO19.8126
Uniprot:Q5A6Q9
Length = 923
Score = 432 (157.1 bits), Expect = 5.7e-40, Sum P(3) = 5.7e-40
Identities = 121/376 (32%), Positives = 197/376 (52%)
Query: 623 VQSAKEELDSLINMCRK-QLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIR 681
+++ +++D +N+ +K LG N + ++G T I A+ K L+ + K ++
Sbjct: 561 LRNVLDDIDVKLNIGKKIVLGRYN-NVILITGKTSSIS-KASAK--LDGDILYEKKMSLV 616
Query: 682 YHSPEVLTALDQLALANEE-LTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXX 740
Y S E + L L +E + +V R + E + EF
Sbjct: 617 YRSTE-WNDIQHLILDKKEAILLVERKIIEELKSEVTRRFPEFRELAGLADFLDVTSSLA 675
Query: 741 XXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDN---FVPNDTNLHAEREYCQII 797
+ N+ P + P ++ + GRH V+++ L D+ F+PND+ + + +I
Sbjct: 676 IVAEENNWTCPKLIKT--P-RLSVEGGRHVVVESSLKDSGNMFIPNDSKMGTDGTLW-VI 731
Query: 798 TGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857
+GPNMGGKS Y+RQ ALI I+AQ+GSFVPA A + ++D I+TR+GA+D + STF+
Sbjct: 732 SGPNMGGKSTYLRQNALIVILAQIGSFVPAEKATIGLVDKIFTRIGATDDLFNDLSTFMV 791
Query: 858 ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917
E+ E S IL N T SL IVDE+GRGTS +G+AIAYATL LL+ KC LF TH+ K
Sbjct: 792 EMVEVSNILTNATPSSLAIVDEIGRGTSGKEGLAIAYATLLSLLQVNKCRTLFATHFGKE 851
Query: 918 ADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQ 977
+ + ++ ++ Y + +V+ D++ + + + PG+SE S VA++A
Sbjct: 852 LE-QLLVANNIDQKNIRYFRT-RVLENGDNEKGFVIDHTLE--PGISERSHALDVARMAG 907
Query: 978 LPPSCISRATVIAAKL 993
P + + A + L
Sbjct: 908 FPENALKAAEKVLDNL 923
Score = 75 (31.5 bits), Expect = 5.7e-40, Sum P(3) = 5.7e-40
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 403 MTLSANTLQQLEVLRNNSNG--SEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISA 460
+ + + T + LE+ G S G+L+ ++ T T G+RLL W+ P D I
Sbjct: 322 LQMDSRTREALELTERTIAGRTSSVGSLVSVIKRTCTSSGTRLLTEWIKSPSLDTKDIEK 381
Query: 461 R 461
R
Sbjct: 382 R 382
Score = 48 (22.0 bits), Expect = 5.7e-40, Sum P(3) = 5.7e-40
Identities = 20/87 (22%), Positives = 35/87 (40%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHL----DHNFMTASI 145
+PL + L P + +I+VG + + E AE LG+ +H A
Sbjct: 50 SPLLASMKRLIDSNPGCVSLIQVGSFYELYFEQAEEYGPKLGLKIAKKKTSNHVVPFAGF 109
Query: 146 PTFRLNVHVRRLVNAG-FKVGVVKQTE 171
PT +L L++ V ++ Q +
Sbjct: 110 PTTQLRKFTEMLIHEQQVNVAIIDQCD 136
>UNIPROTKB|Q75D87 [details] [associations]
symbol:AGOS_ABR137W "ABR137Wp" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032139
"dinucleotide insertion or deletion binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA] [GO:0043504
"mitochondrial DNA repair" evidence=IBA] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005739 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE016815 GenomeReviews:AE016815_GR GO:GO:0008094
GO:GO:0043504 Gene3D:3.30.420.110 SUPFAM:SSF48334 GO:GO:0032137
Gene3D:3.40.1170.10 SUPFAM:SSF55271 HOGENOM:HOG000157750
OrthoDB:EOG42591V SUPFAM:SSF53150 GO:GO:0032300 GO:GO:0032139
RefSeq:NP_983084.2 STRING:Q75D87 EnsemblFungi:AAS50908
GeneID:4619194 KEGG:ago:AGOS_ABR137W Uniprot:Q75D87
Length = 955
Score = 385 (140.6 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 100/307 (32%), Positives = 163/307 (53%)
Query: 691 LDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVR 750
L L L +EE I+ D+ ++ Y E + KN V
Sbjct: 663 LTTLELLDEERYIL-----DNLQRKIITYSTEIRAIAQTVDYLDVLSSFAILASEKNLVC 717
Query: 751 PVFVDDHEPVQIHICSGRHPVLDTILLD----NFVPNDTNLHAEREYCQIITGPNMGGKS 806
P VD+ ++I GRH V++ L NF ND +L + I+TGPNMGGKS
Sbjct: 718 PQ-VDESSALEI--VGGRHLVVEDGLQSRAPGNFTANDCSL--QNGDIWIVTGPNMGGKS 772
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ A+I I+AQ+G +VP +SA + ++D I++R+G++D + STF+ E+ E S++L
Sbjct: 773 TFLRQTAIIVILAQIGCYVPCASAHIGLVDKIFSRVGSADDLYNDMSTFMVEMLETSFML 832
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK-IADIKTKFT 925
+ T +SL I+DE+GRGT+ DGV IAY TL ++L +C LF +H+ + ++++ +
Sbjct: 833 KGATKRSLAILDEIGRGTNAEDGVGIAYTTLHHMLTKNRCRALFASHFGRELSELVEQHL 892
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
V + ++ + + +S D +K+ PG+ SS +VAQ+A P +
Sbjct: 893 PPGARKRVHFYRTN--VREHNGRSFYD----HKITPGICLSSDAIRVAQMAGFPQEALDV 946
Query: 986 AT-VIAA 991
A V+AA
Sbjct: 947 ARRVLAA 953
Score = 89 (36.4 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 29/92 (31%), Positives = 46/92 (50%)
Query: 85 HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI------YAHLDH 138
++ P Q V ++ KYPD +L+ ++G + + E AE A L I Y+H
Sbjct: 69 YSNSLPPSLQFVRDMMDKYPDYVLLTQMGSFYELYYEHAEKYAPKLNITLTRREYSHGKV 128
Query: 139 NFMTASIPTFRLNVHVRRLVNA-GFKVGVVKQ 169
F A P +L+ H++ LV G+ V VV+Q
Sbjct: 129 PF--AGFPLEQLSRHLKVLVKEYGYSVAVVEQ 158
Score = 84 (34.6 bits), Expect = 8.9e-40, Sum P(3) = 8.9e-40
Identities = 38/172 (22%), Positives = 73/172 (42%)
Query: 371 ALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLH 430
AL + +++Q E + L RSL+ M + + T LE+ + + G+LL
Sbjct: 326 ALRANLTYIEQHLPEMLANLAFPKRSLTTD-SMQIDSRTSAALELHNTFRDNLKRGSLLS 384
Query: 431 IMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSD 490
+ T+T G+RLL +W++ P + I R + V ++ + T + Q + +D
Sbjct: 385 AIRRTVTPSGTRLLTQWLSAPSMHLDEIKQRQNLVRLFMQN--PFVTDNLIAQL-KATAD 441
Query: 491 VTIVEPQFYYILSSVLTSLGRSPDIQR--GITRIFHRTATPSEFIAVMQAIL 540
+T + +F + L + +Q+ I H T + A+L
Sbjct: 442 MTRILQKFSFKRGDAAHLLQMAQSLQQCSAIGDTIHSFTTEGPISKDLAAVL 493
>SGD|S000001162 [details] [associations]
symbol:MSH1 "DNA-binding protein involved in repair of
mitochondrial DNA" species:4932 "Saccharomyces cerevisiae"
[GO:0030983 "mismatched DNA binding" evidence=IEA] [GO:0007005
"mitochondrion organization" evidence=IMP] [GO:0000228 "nuclear
chromosome" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0043570
"maintenance of DNA repeat elements" evidence=IRD] [GO:0005739
"mitochondrion" evidence=IEA;IDA] [GO:0043504 "mitochondrial DNA
repair" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA;IMP] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA;IMP]
[GO:0032137 "guanine/thymine mispair binding" evidence=IDA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IDA] [GO:0000002 "mitochondrial genome maintenance"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IMP] [GO:0003684 "damaged DNA binding" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001162 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BK006934 GO:GO:0006298 EMBL:U00059 GO:GO:0008094
GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150 EMBL:M84169
PIR:S48962 RefSeq:NP_011988.1 ProteinModelPortal:P25846 SMR:P25846
DIP:DIP-6433N IntAct:P25846 MINT:MINT-683422 STRING:P25846
PaxDb:P25846 EnsemblFungi:YHR120W GeneID:856520 KEGG:sce:YHR120W
CYGD:YHR120w OMA:KERLLNP NextBio:982278 Genevestigator:P25846
GermOnline:YHR120W GO:GO:0032300 GO:GO:0032139 Uniprot:P25846
Length = 959
Score = 399 (145.5 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 100/300 (33%), Positives = 162/300 (54%)
Query: 694 LALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVF 753
L + NEE I+ D F ++F E + +N V P
Sbjct: 672 LKIRNEEANII-----DLFKRKFIDRSNEVRQVATTLGYLDTLSSFAVLANERNLVCPK- 725
Query: 754 VDDHEPVQIHICSGRHPVLDTIL----LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYI 809
VD+ ++ + +GRH +++ L L+ F N+ L + + +ITGPNMGGKS ++
Sbjct: 726 VDESN--KLEVVNGRHLMVEEGLSARSLETFTANNCELAKDNLW--VITGPNMGGKSTFL 781
Query: 810 RQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869
RQ A+I I+AQ+G FVP S A + ++D +++R+G++D + STF+ E+ E S+IL+
Sbjct: 782 RQNAIIVILAQIGCFVPCSKARVGIVDKLFSRVGSADDLYNEMSTFMVEMIETSFILQGA 841
Query: 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVG 929
T +SL I+DE+GRGTS +G++IAYATL YLLE+ +C LF TH+ + ++K + +
Sbjct: 842 TERSLAILDEIGRGTSGKEGISIAYATLKYLLENNQCRTLFATHFGQ--ELK-QIIDNKC 898
Query: 930 TYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVI 989
+ +S G D + + Y +K+ PG+ S +VA+LA P + A I
Sbjct: 899 SKGMSEKVKFYQSGITDLGGN-NFCYNHKLKPGICTKSDAIRVAELAGFPMEALKEAREI 957
Score = 81 (33.6 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 30/129 (23%), Positives = 63/129 (48%)
Query: 395 RSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCD 454
R L+ ++ M + + T LE+ + ++ G+LL + T+T G+RLL +W++ P D
Sbjct: 356 RQLATAI-MQIDSRTSTALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLD 414
Query: 455 RNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLT--SLGRS 512
I R V+ ++ +E++ +K +D++ + +F + L + RS
Sbjct: 415 LKEIKKRQKIVAFFKDNRD---ITETLRTMLKKVNDLSRILQKFSFGRGEALELIQMARS 471
Query: 513 PDIQRGITR 521
++ R I +
Sbjct: 472 LEVSREIRK 480
Score = 77 (32.2 bits), Expect = 9.0e-40, Sum P(3) = 9.0e-40
Identities = 33/126 (26%), Positives = 56/126 (44%)
Query: 81 SQTTHNKKYTPLEQQVV-ELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI------Y 133
S T +K P Q V +L Y D +++ ++G + + E A A L I Y
Sbjct: 70 SSTEPSKASLPPSLQYVRDLMDLYKDHVVLTQMGSFYELYFEQAIRYAPELNISLTNRAY 129
Query: 134 AHLDHNFMTASIPTFRLNVHVRRLVN-AGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSA 192
+H F A P +L+ H++ LVN G+ V + +Q + + +A F R ++
Sbjct: 130 SHGKVPF--AGFPVHQLSRHLKMLVNNCGYSVTIAEQFKKKDV---ADNEANKFYRRVTR 184
Query: 193 LYTKAT 198
+ T T
Sbjct: 185 IVTPGT 190
Score = 53 (23.7 bits), Expect = 7.4e-37, Sum P(3) = 7.4e-37
Identities = 27/130 (20%), Positives = 50/130 (38%)
Query: 506 LTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEY--REKVTSKT 563
L +LG +R + +I +T T E A+ ++Y L I+ + R+ T+
Sbjct: 305 LFNLGGKEATERQL-KIQFQTFTQKELAALRNTLIYVSNHLPDFSINFQIPQRQLATAIM 363
Query: 564 LHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFS--EVARARK 621
+ + S+ K LLS++ + G L +S E+ + +K
Sbjct: 364 QIDSRTSTALELHSTVRDNNKKGSLLSSIRRTVTPSGTRLLSQWLSGPSLDLKEIKKRQK 423
Query: 622 AVQSAKEELD 631
V K+ D
Sbjct: 424 IVAFFKDNRD 433
Score = 38 (18.4 bits), Expect = 2.7e-35, Sum P(3) = 2.7e-35
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 589 LSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLIN 635
L T+ K+ D +L G+ E+ + ++++ ++E L+N
Sbjct: 438 LRTMLKKVNDLSRILQKFSFGRGEALELIQMARSLEVSREIRKYLLN 484
>UNIPROTKB|H9L225 [details] [associations]
symbol:H9L225 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10 SUPFAM:SSF55271
GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035739 Uniprot:H9L225
Length = 187
Score = 430 (156.4 bits), Expect = 2.5e-39, P = 2.5e-39
Identities = 90/178 (50%), Positives = 116/178 (65%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTF 148
YTPLE Q +E+K +Y D +L +E GYK+RFFGEDAE+A+K L I H DHNFMTASIPT
Sbjct: 1 YTPLELQFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTH 60
Query: 149 RLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXXXXXX 208
RL VHVRRLV G KVGV+KQ ETAA+KA G K+ F R L+ALYTK+TL
Sbjct: 61 RLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDILFKN 120
Query: 209 XXXXXXX--SNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFND 264
NYL+C+ ++ NV + G D+ +GV+A++ +TG+VV+ F D
Sbjct: 121 VEEVTTDVPDNYLLCICENGENVKNRKKG------DIVIGVMAIQPTTGEVVFDSFGD 172
>UNIPROTKB|F1M551 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 RGD:1563954
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 Gene3D:3.40.1170.10
SUPFAM:SSF55271 IPI:IPI00947919 Ensembl:ENSRNOT00000064966
ArrayExpress:F1M551 Uniprot:F1M551
Length = 370
Score = 427 (155.4 bits), Expect = 5.2e-39, P = 5.2e-39
Identities = 99/238 (41%), Positives = 131/238 (55%)
Query: 69 SPHTLNPIPTPSSQTTHNKK-YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAA 127
SP T +K YTPLE Q +++K + D +L +E GYK+RFFGEDAE+AA
Sbjct: 133 SPEAFQKTSTCKPFNRRSKSIYTPLELQYLDVKQLHKDAVLCVECGYKYRFFGEDAEIAA 192
Query: 128 KVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFG 187
+ L IY HLDHNFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G K+ F
Sbjct: 193 RELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNKSSVFS 252
Query: 188 RGLSALYTKATL--------XXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGD 239
R L+ALYTK+TL +NYL+C+ ++ N+ + G
Sbjct: 253 RKLTALYTKSTLIGEDILDRTLDDSVNIDEAVTDTSTNYLLCIYEEKENIKDKKKG---- 308
Query: 240 GFDVRLGVVAVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML 297
++ G+V V+ +TG+VV+ F D R LS+ TE ++
Sbjct: 309 --NISFGIVGVQPATGEVVFDCFQDSASRLELETRTASLQPVELLLPSQLSEPTEMLI 364
>DICTYBASE|DDB_G0283957 [details] [associations]
symbol:msh4 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0000228
"nuclear chromosome" evidence=ISS] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0000795
"synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05188 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0283957 GO:GO:0005524
GenomeReviews:CM000153_GR GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
EMBL:AAFI02000058 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 KO:K08740 SUPFAM:SSF48334
SUPFAM:SSF53150 OMA:MSGKSVY RefSeq:XP_638826.1
ProteinModelPortal:Q54QB8 EnsemblProtists:DDB0229912 GeneID:8624350
KEGG:ddi:DDB_G0283957 InParanoid:Q54QB8 ProtClustDB:CLSZ2728957
Uniprot:Q54QB8
Length = 1041
Score = 395 (144.1 bits), Expect = 8.7e-39, Sum P(3) = 8.7e-39
Identities = 123/411 (29%), Positives = 197/411 (47%)
Query: 605 LMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF 664
+M I +G + +K + ++++ L ++Q + L+ + LP
Sbjct: 594 IMYIKDGVNGLLDVCKKTYKEITDDINKLTKYYKEQFKLPQLKLQHCQTKGYYYSLPCKN 653
Query: 665 KVPLNWAKV--NSTKKTIRYHS-PEVLTALDQLAL-ANEELTIVCRAAWDSFLKEFGGYY 720
K + V S+ + +Y+ E LT+L + + EE+ I+ + + ++ + +
Sbjct: 654 KALFHLPNVFVRSSYRNQKYYLFSEELTSLSRRSREVFEEIIILSAQSIEKLIEFYRSHI 713
Query: 721 AEFXXXXXXXXXXXXXXXXXXXSRNKN-FVRPVFVDDHEPVQIHICSGRHPVL------D 773
+E S + V P + P+ I SG HP+
Sbjct: 714 SELYNISESISLLDFLVSGALYSLQLDQSVCPEIFNGKGPLAIK--SGYHPLQLKKSKKK 771
Query: 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELH 833
FVPNDT ++ + Q+I G NM GKS YI+QVAL+ I+A +G F+PA A +
Sbjct: 772 ESFSTCFVPNDTLINETASF-QLIHGCNMSGKSTYIQQVALLTIVAHIGYFLPAEFATVP 830
Query: 834 VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIA 893
++D I +R+G SD+IQ STF+ E+ E SYIL N T SLVI+DELGRGTS DG +IA
Sbjct: 831 IVDQIISRLGTSDNIQSNASTFMTEMKEISYILENTTESSLVIIDELGRGTSNMDGSSIA 890
Query: 894 YATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDV 953
++ ++L C LFVTHY ++ ++ T F ++ YH + S D S
Sbjct: 891 WSISEHL-SMIGCYTLFVTHYQQLLNLAT-FYPNIRVYH--FQVSK------DDSSGLKY 940
Query: 954 TYLYKVVPGVSE-SSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN 1003
YL+ GVS S+G + A+LA + I A I LE++ ++ N
Sbjct: 941 NYLFS--EGVSSIDSYGVETAELAGIDSKVIQSAKTIRNLLESKSNNNQIN 989
Score = 117 (46.2 bits), Expect = 8.7e-39, Sum P(3) = 8.7e-39
Identities = 32/114 (28%), Positives = 58/114 (50%)
Query: 356 SAIEGIMNMPDLAVQALALTIRHLKQFGLERIM-CLGASFRSLSGSMEMTLSANTLQQLE 414
S IE L++ + I++L+Q G+ + C+ + SM+ + A T++ LE
Sbjct: 350 SIIEKFTKDKVLSLSSFNALIKYLEQDGIMFVKNCIRIKYSGSENSMQ--IDAETIKNLE 407
Query: 415 VLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
++ ++ +GS TL +N+T T GSRLL + P D I R +A+ ++
Sbjct: 408 LIHSSKDGSRNCTLYQSINNTSTSQGSRLLISAIVQPSNDFETIKHRQNAIKQL 461
Score = 38 (18.4 bits), Expect = 8.7e-39, Sum P(3) = 8.7e-39
Identities = 14/74 (18%), Positives = 37/74 (50%)
Query: 568 LLKRLILTASSPAVIGKAAKLLST-VNKEAADQGDLLNLMIISNGQFSEVARAR-KAVQS 625
L+K + ++ +I +++K+L+ +N + + Q Q +V + K +
Sbjct: 537 LIKGKLNNETNNILIKESSKVLNVNLNFQLSKQDQQHQQKEQQQQQQQQVNKINYKIIMY 596
Query: 626 AKEELDSLINMCRK 639
K+ ++ L+++C+K
Sbjct: 597 IKDGVNGLLDVCKK 610
>UNIPROTKB|H9L226 [details] [associations]
symbol:H9L226 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR007860
InterPro:IPR016151 Pfam:PF01624 Pfam:PF05188 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 Gene3D:3.30.420.110 Gene3D:3.40.1170.10
SUPFAM:SSF55271 GeneTree:ENSGT00550000074949 EMBL:AADN02030667
Ensembl:ENSGALT00000035740 Uniprot:H9L226
Length = 404
Score = 422 (153.6 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 99/230 (43%), Positives = 131/230 (56%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTF 148
YTPLE Q +E+K +Y D +L +E GYK+RFFGEDAE+A+K L I H DHNFMTASIPT
Sbjct: 165 YTPLELQFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTH 224
Query: 149 RLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX----- 203
RL VHVRRLV G KVGV+KQ ETAA+KA G K+ F R L+ALYTK+TL
Sbjct: 225 RLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDVNPLL 284
Query: 204 ----XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVY 259
NYL+C+ ++ NV + G D+ +GV+A++ +TG+VV+
Sbjct: 285 KLDDSVDVEEVTTDVPDNYLLCICENGENVKNRKKG------DIVIGVMAIQPTTGEVVF 338
Query: 260 GEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPA-SNVR 308
F D R LS Q+EK++ + + SNV+
Sbjct: 339 DSFGDCASRLELESRLLRLQPVELILPSSLSDQSEKLINSVTSMSYSNVK 388
>UNIPROTKB|Q7S0U7 [details] [associations]
symbol:NCU07407 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0003684 "damaged DNA
binding" evidence=IBA] [GO:0005739 "mitochondrion" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032139 "dinucleotide insertion or deletion binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
[GO:0043504 "mitochondrial DNA repair" evidence=IBA] [GO:0000228
"nuclear chromosome" evidence=IRD] [GO:0000404 "loop DNA binding"
evidence=IRD] [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0007131 "reciprocal meiotic recombination" evidence=IRD]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007695 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005739 GO:GO:0005524 GO:GO:0003684 GO:GO:0006298
GO:GO:0008094 GO:GO:0043504 eggNOG:COG0249 SUPFAM:SSF48334
GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 OMA:RVGGFYE EMBL:AABX02000038
RefSeq:XP_958182.2 UniGene:Ncr.21352 EnsemblFungi:EFNCRT00000007377
GeneID:3874329 KEGG:ncr:NCU07407 Uniprot:Q7S0U7
Length = 1184
Score = 390 (142.3 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 100/261 (38%), Positives = 147/261 (56%)
Query: 746 KNFVRPVFVDDHEP-------VQIHICSGRHPVLDTILLDN---FVPNDTNLHAEREYC- 794
+N VRP+ D + I GRHP ++ LL F ND + + +
Sbjct: 919 QNLVRPILHDSSTTNGSQGMGTRTVIVGGRHPTVEPSLLSRGMTFQKNDCLIGSPGQGAI 978
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
+ITGPNM GKS ++RQ ALI I+AQ+G +VPA AEL ++D I++R+G++D++ +ST
Sbjct: 979 WLITGPNMAGKSTFLRQNALITILAQMGCYVPADYAELGIVDAIFSRVGSADNLYADQST 1038
Query: 855 FLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914
F+ E+ E + ILR T +S VI+DE+GRGT+ DG A+A+A+L +LL KC LF TH+
Sbjct: 1039 FMVEMMETAAILRQATPRSFVIMDEIGRGTTPEDGTAVAFASLHHLLTVNKCRGLFATHF 1098
Query: 915 PKIADIKTKFTGSVGTYHVSYL-TSHKV-MGPMDSKSDQD--VTYLYKVVPGVSESSFGF 970
+ D+ K G V S S V M D + D+ Y++K+ G++ S
Sbjct: 1099 HAVGDM-LKEQGLVVEDGASSAGASWGVAMYCTDVEEDESGGFVYVHKLRKGMNRQSHAL 1157
Query: 971 KVAQLAQLPPSCISRATVIAA 991
KVA+LA LP I A + A
Sbjct: 1158 KVARLAGLPEPAIKIAQQVLA 1178
Score = 122 (48.0 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 37/154 (24%), Positives = 75/154 (48%)
Query: 315 DCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALAL 374
D G + E ++ +++LS N D + + E ++ D ++A +
Sbjct: 398 DSLEGSSSFQEALNTGTGQKKESLSENIQTLKDWAPMLDAKIPTETVIRFTDDEIKAGNV 457
Query: 375 TIRHLKQFGLERI-MCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSEYGTLLHIM 432
+ ++ L+ + M L R +M+ MT+ N+++ LE+ + G G+LLH +
Sbjct: 458 LLHYVTD-RLQGLSMKLQPPIRH--DNMQIMTIDKNSMRSLEIKKTMREGFFAGSLLHAI 514
Query: 433 NHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVS 466
T+T G+RLL W++ P ++I++RLD ++
Sbjct: 515 RRTVTKSGARLLNEWLSAPSTSLSVINSRLDLIT 548
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(3) = 2.0e-38
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 505 VLTSLGRSPDIQRGITRIFHRT 526
++T +PD+ IT + HR+
Sbjct: 546 LITRFISNPDLSDAITVLLHRS 567
>UNIPROTKB|Q6L4V0 [details] [associations]
symbol:P0010D04.9 "Putative uncharacterized protein
P0010D04.9" species:39947 "Oryza sativa Japonica Group" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 GO:GO:0005524 EMBL:AP008211 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AC130605 RefSeq:NP_001055948.1 UniGene:Os.53982
GeneID:4339215 KEGG:osa:4339215 ProtClustDB:CLSN2695708
Uniprot:Q6L4V0
Length = 809
Score = 417 (151.9 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 102/285 (35%), Positives = 162/285 (56%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R N+VRP+ +D + I +GRH L + +D FVPNDT + + IITGPN
Sbjct: 521 ARQNNYVRPILTEDSI---LEIQNGRH-ALQEMTVDTFVPNDTKIRSSGRI-NIITGPNY 575
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS YI+QVAL+ +A +GSFVPA SA + + D I+ MG S S+ +STF+ +L++
Sbjct: 576 SGKSIYIKQVALVVFLAHIGSFVPADSAIVGLTDRIFCAMG-SKSMTSEQSTFMIDLHQV 634
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC--MVLFVTHYPKIADI 920
+LR+ T++SL ++DE G+GT T DG+ + T+ + ++ C VL TH +I
Sbjct: 635 GTMLRHATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFTDYD-CPPKVLLSTHLTQI--- 690
Query: 921 KTKFTGSV--GTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978
FT S + H+ T V+ P + ++DV +LY++VPG + SFG AQLA +
Sbjct: 691 ---FTESYLPQSEHIKCYTM-SVLNPDEQTDNEDVIFLYRLVPGQALLSFGLHCAQLAGV 746
Query: 979 PPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQEAQE 1023
P + RA + + ++ R +R + KL+ ++Q+ Q+
Sbjct: 747 PSEVVQRAVTVLGDIHSK-------RPIRRMVWEKLAAKDQQYQD 784
Score = 69 (29.3 bits), Expect = 1.2e-37, Sum P(2) = 1.2e-37
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 431 IMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVS 466
++N +T G LLR W P+ D ++I+ RL+ +S
Sbjct: 223 MLNKCVTPMGKHLLRTWFLRPIIDIDVINNRLNTIS 258
>UNIPROTKB|Q23AD6 [details] [associations]
symbol:TTHERM_00426230 "MutS domain III family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000228 "nuclear
chromosome" evidence=IBA] [GO:0000400 "four-way junction DNA
binding" evidence=IBA] [GO:0000710 "meiotic mismatch repair"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IBA]
[GO:0007131 "reciprocal meiotic recombination" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0009411 "response to UV" evidence=IBA] [GO:0032137
"guanine/thymine mispair binding" evidence=IBA] [GO:0032138 "single
base insertion or deletion binding" evidence=IBA] [GO:0032301
"MutSalpha complex" evidence=IBA] [GO:0043570 "maintenance of DNA
repeat elements" evidence=IBA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IBA] InterPro:IPR000432
InterPro:IPR007695 InterPro:IPR007696 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009411 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0045910 GO:GO:0008094
SUPFAM:SSF48334 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR017261 InterPro:IPR015536 PANTHER:PTHR11361:SF31
PIRSF:PIRSF037677 EMBL:GG662724 RefSeq:XP_001013801.1
UniGene:Tth.12031 ProteinModelPortal:Q23AD6
EnsemblProtists:EAR93556 GeneID:7834338 KEGG:tet:TTHERM_00426230
ProtClustDB:CLSZ2445539 Uniprot:Q23AD6
Length = 1139
Score = 269 (99.8 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 66/208 (31%), Positives = 111/208 (53%)
Query: 808 YIRQVALIGIMAQV--GSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865
Y R ++ Q+ G +VPA E ++D I+TR+GA D + +G+STF E+ E
Sbjct: 928 YFRNYQNFKLILQLKQGCYVPAEQCEFSLVDRIFTRIGAGDKLIEGKSTFYIEMEEVKNS 987
Query: 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFT 925
+ T S+ I DELGRGTST DGVAIA+ L Y +E + +F TH+ + + + +F
Sbjct: 988 IMYGTYNSIAIFDELGRGTSTFDGVAIAFGILKYFIEKIQSRCIFATHFFLLIN-ELRFY 1046
Query: 926 GSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISR 985
+ YH+ Y D+KS + + + YK+ G +ESSFG +A++ + S ++
Sbjct: 1047 KEISFYHMEYY--------YDNKSKK-LIFKYKLKQGNAESSFGIDLAKIVGIEQSVLN- 1096
Query: 986 ATVIAAKLEAEVSSRVQNRSAKRDLLVK 1013
+A K + E + ++ ++ +K
Sbjct: 1097 ---LAQKKQLEFENSLEYAEVEKQQTIK 1121
Score = 126 (49.4 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 28/82 (34%), Positives = 45/82 (54%)
Query: 400 SMEMTLSANTLQQLEVLRNNSNG---------SEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
S M L + LQ LE+ N+ + GTLL+ +++T T YG R+L++WV
Sbjct: 501 SQRMILDSQALQHLEIFENSQTALTTTFQQVDQKKGTLLNYLDYTKTPYGKRMLKKWVCS 560
Query: 451 PLCDRNLISARLDAVSEIAESM 472
PL D + I+ R DA+ +I ++
Sbjct: 561 PLIDISAINDRYDAIEDIQNNL 582
Score = 103 (41.3 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 32/84 (38%), Positives = 45/84 (53%)
Query: 750 RPV--FVDDHEPVQIHICSGRHPVLDTILLD-NFVPND------TNLHAEREYCQIITGP 800
RPV F + + ++ GR+P L I LD VPND ++A+ I+TGP
Sbjct: 848 RPVIKFAKNQKETFFYLKQGRNPNL--IQLDLKQVPNDIILGNIAGMNAQPNI-MILTGP 904
Query: 801 NMGGKSCYIRQVALIGIMAQVGSF 824
NMGGKS +R L I+AQ+G +
Sbjct: 905 NMGGKSTTLRLFCLSAILAQIGIY 928
Score = 94 (38.1 bits), Expect = 1.9e-37, Sum P(4) = 1.9e-37
Identities = 30/112 (26%), Positives = 52/112 (46%)
Query: 88 KYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPT 147
K T +Q ++K K+ D +++ ++G + F EDA +A ++L I + + P
Sbjct: 224 KLTSAMKQYWQIKAKHFDKIILFKMGKFYELFYEDAIIATRLLDIT--FTNKELHCGFPE 281
Query: 148 FRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
L +LV G+KV VV+QT G R ++ + TK T+
Sbjct: 282 KALEKFASKLVQFGYKVVVVEQTSKKTT-------TGIVDRDITQIITKGTI 326
>UNIPROTKB|Q5BDA1 [details] [associations]
symbol:AN1479.2 "DNA-binding protein of the mitochondria
(Eurofung)" species:227321 "Aspergillus nidulans FGSC A4"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0005739
"mitochondrion" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032137 "guanine/thymine mispair
binding" evidence=IBA] [GO:0032139 "dinucleotide insertion or
deletion binding" evidence=IBA] [GO:0032300 "mismatch repair
complex" evidence=IBA] [GO:0043504 "mitochondrial DNA repair"
evidence=IBA] [GO:0000228 "nuclear chromosome" evidence=IRD]
[GO:0000404 "loop DNA binding" evidence=IRD] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0007131 "reciprocal meiotic
recombination" evidence=IRD] [GO:0043570 "maintenance of DNA repeat
elements" evidence=IRD] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR016151
Pfam:PF00488 Pfam:PF01624 Pfam:PF05188 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005739 GO:GO:0005524
GO:GO:0003684 EMBL:BN001307 GO:GO:0006298 GO:GO:0008094
EMBL:AACD01000022 GO:GO:0043504 eggNOG:COG0249 Gene3D:3.30.420.110
SUPFAM:SSF48334 GO:GO:0032137 Gene3D:3.40.1170.10 SUPFAM:SSF55271
HOGENOM:HOG000157750 OrthoDB:EOG42591V SUPFAM:SSF53150
GO:GO:0032300 GO:GO:0032139 RefSeq:XP_659083.1 STRING:Q5BDA1
EnsemblFungi:CADANIAT00008100 GeneID:2875263 KEGG:ani:AN1479.2
OMA:RVGGFYE Uniprot:Q5BDA1
Length = 924
Score = 421 (153.3 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 135/479 (28%), Positives = 221/479 (46%)
Query: 540 LYAGKQLQQLHIDGEY-REKVTSKTLHSA--LLKRLILTASSPAVIGKAAKLL--STVNK 594
L A K L + +G ++++ T A L + + L + A + K + T +
Sbjct: 456 LLADKILSAIDEEGLLQKQRIEEDTAAEAAILAQEVTLNEGAAADLASLPKKVREKTTER 515
Query: 595 EAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGI 654
A D+ I+ + + + + E L R +G + G+
Sbjct: 516 TATDESSPDETWIMRRDASPALKELHRTLDELQNEKSKLGQYLRDSVGSSAITLKWTPGL 575
Query: 655 THLIELPANFKVPLNWAK-------VNSTKKTIRYHSP---EVLTALDQLA--LANEELT 702
H+ + KV + V+STK T ++ P E+ +DQ+ + EE
Sbjct: 576 GHICHVKGA-KVSQQQLEDIGVTRNVSSTKSTRSFYLPAWTELGGRMDQIKVQIRQEE-- 632
Query: 703 IVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQI 762
+A ++ +E + + + VRP+ E
Sbjct: 633 ---QAIFEQLRREVILNLVKIRRNASVMDELDVACSFATLAAEQQLVRPILT---EGTNY 686
Query: 763 HICSGRHPVLDTILLDN---FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA 819
I GRHP + L + FV ND L E E +ITGPNM GKS ++RQ ALI I+A
Sbjct: 687 KIIGGRHPTVKLGLEEQGRRFVSNDCFL-GESERIWLITGPNMAGKSTFLRQNALITILA 745
Query: 820 QVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDE 879
QVGSFVPA AE+ ++D I++R+GA+D + + +STF+ E+ E + IL+ TA+S VI+DE
Sbjct: 746 QVGSFVPADYAEIGIVDQIFSRIGAADDLFRDQSTFMVEMLETAAILKQATARSFVIMDE 805
Query: 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSH 939
+GRGT+ DG A+++A L +L +C LF TH+ +AD+ +F ++G Y T
Sbjct: 806 VGRGTTPEDGTAVSFACLHHLHYRNQCRTLFATHFHGLADMTQEFP-ALGRY----CTDV 860
Query: 940 KVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVS 998
K ++ ++++K+ G++ S KVAQLA LP + A + + E S
Sbjct: 861 K------ETTEGRFSFVHKLRKGINRESHALKVAQLAGLPSETLELARSVRDSIRGEAS 913
>WB|WBGene00001872 [details] [associations]
symbol:him-14 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0045143 "homologous
chromosome segregation" evidence=IMP] [GO:0051026 "chiasma
assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
EMBL:FO081697 GO:GO:0000239 GO:GO:0008094 GO:GO:0051026
GO:GO:0000712 GO:GO:0045143 GO:GO:0000795 EMBL:AF178755 PIR:E88197
RefSeq:NP_495451.1 UniGene:Cel.22695 ProteinModelPortal:Q23405
SMR:Q23405 STRING:Q23405 PaxDb:Q23405 EnsemblMetazoa:ZK1127.11
GeneID:174157 KEGG:cel:CELE_ZK1127.11 UCSC:ZK1127.11 CTD:174157
WormBase:ZK1127.11 eggNOG:COG0249 GeneTree:ENSGT00550000074897
HOGENOM:HOG000015880 InParanoid:Q23405 KO:K08740 OMA:GFFIQMT
NextBio:882779 GermOnline:ZK1127.11 Gene3D:3.30.420.110
SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 373 (136.4 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 102/360 (28%), Positives = 181/360 (50%)
Query: 666 VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXX 725
+P + V + T+ ++S +V+ D+L E+ + ++E
Sbjct: 461 IPRYFLDVFRNRTTVTFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYY 520
Query: 726 XXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDT 785
S ++ +P F P I GRHP+LD + + NDT
Sbjct: 521 AMDALSSIDFLCGLATYSDLRDTCKPTF----GP-SFSISQGRHPILDWDDSEKTITNDT 575
Query: 786 NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGAS 845
L +R + IITGPNM GKS Y++Q A + IMAQ+G F+PA+ A L + + I++RMG +
Sbjct: 576 CLTRDRRF-GIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHN 634
Query: 846 DSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK 905
D + + +S F E+++A+ I++ SLV++DEL R TST +G+AI YA + +L+ +
Sbjct: 635 DELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLQS 694
Query: 906 CMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSE 965
L TH+ IA + ++ ++ YH +L P ++D++ T +K++ G
Sbjct: 695 YTFL-ATHFLDIAAL-ANYSNAIDNYH--FL-------P---QTDENSTKKHKLLRGQYR 740
Query: 966 SS-FGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNR-SAKRDLLVKLSDQEQEAQE 1023
+GF++ +L+ +P I A +A +L A V ++ S +R + V ++ + +E E
Sbjct: 741 GPLYGFELVELSTIPDEVIEHAQSLATELRANVEDTERDYDSERRRIKVYMNHRFRECAE 800
Score = 91 (37.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
TL+ ++NHT+T G RLLR V P D LI +R +A+ E+
Sbjct: 238 TLMSVLNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEEL 279
>UNIPROTKB|Q23405 [details] [associations]
symbol:him-14 "MutS protein homolog him-14" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IMP] [GO:0000712
"resolution of meiotic recombination intermediates" evidence=IMP]
[GO:0000239 "pachytene" evidence=IMP] [GO:0032300 "mismatch repair
complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05188
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0051729 GO:GO:0006298
GO:GO:0030983 EMBL:FO081697 GO:GO:0000239 GO:GO:0008094
GO:GO:0051026 GO:GO:0000712 GO:GO:0045143 GO:GO:0000795
EMBL:AF178755 PIR:E88197 RefSeq:NP_495451.1 UniGene:Cel.22695
ProteinModelPortal:Q23405 SMR:Q23405 STRING:Q23405 PaxDb:Q23405
EnsemblMetazoa:ZK1127.11 GeneID:174157 KEGG:cel:CELE_ZK1127.11
UCSC:ZK1127.11 CTD:174157 WormBase:ZK1127.11 eggNOG:COG0249
GeneTree:ENSGT00550000074897 HOGENOM:HOG000015880 InParanoid:Q23405
KO:K08740 OMA:GFFIQMT NextBio:882779 GermOnline:ZK1127.11
Gene3D:3.30.420.110 SUPFAM:SSF48334 Uniprot:Q23405
Length = 842
Score = 373 (136.4 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 102/360 (28%), Positives = 181/360 (50%)
Query: 666 VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXX 725
+P + V + T+ ++S +V+ D+L E+ + ++E
Sbjct: 461 IPRYFLDVFRNRTTVTFNSRKVIAYNDRLEQVVAEMFLASDVIVCDMIEEMQPMIPVLYY 520
Query: 726 XXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDT 785
S ++ +P F P I GRHP+LD + + NDT
Sbjct: 521 AMDALSSIDFLCGLATYSDLRDTCKPTF----GP-SFSISQGRHPILDWDDSEKTITNDT 575
Query: 786 NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGAS 845
L +R + IITGPNM GKS Y++Q A + IMAQ+G F+PA+ A L + + I++RMG +
Sbjct: 576 CLTRDRRF-GIITGPNMAGKSTYLKQTAQLAIMAQIGCFIPANYASLPIFNRIFSRMGHN 634
Query: 846 DSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK 905
D + + +S F E+++A+ I++ SLV++DEL R TST +G+AI YA + +L+ +
Sbjct: 635 DELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVLKLQS 694
Query: 906 CMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSE 965
L TH+ IA + ++ ++ YH +L P ++D++ T +K++ G
Sbjct: 695 YTFL-ATHFLDIAAL-ANYSNAIDNYH--FL-------P---QTDENSTKKHKLLRGQYR 740
Query: 966 SS-FGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNR-SAKRDLLVKLSDQEQEAQE 1023
+GF++ +L+ +P I A +A +L A V ++ S +R + V ++ + +E E
Sbjct: 741 GPLYGFELVELSTIPDEVIEHAQSLATELRANVEDTERDYDSERRRIKVYMNHRFRECAE 800
Score = 91 (37.1 bits), Expect = 5.9e-35, Sum P(2) = 5.9e-35
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
TL+ ++NHT+T G RLLR V P D LI +R +A+ E+
Sbjct: 238 TLMSVLNHTVTTNGYRLLRSSVLQPSTDVYLIQSRQEAIEEL 279
>TAIR|locus:2130913 [details] [associations]
symbol:MSH4 "AT4G17380" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000794 "condensed nuclear chromosome" evidence=IDA]
[GO:0007129 "synapsis" evidence=RCA;IMP] [GO:0009506 "plasmodesma"
evidence=IDA] [GO:0000911 "cytokinesis by cell plate formation"
evidence=RCA] [GO:0006302 "double-strand break repair"
evidence=RCA] [GO:0006312 "mitotic recombination" evidence=RCA]
[GO:0007059 "chromosome segregation" evidence=RCA] [GO:0007062
"sister chromatid cohesion" evidence=RCA] [GO:0007067 "mitosis"
evidence=RCA] [GO:0007126 "meiosis" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0010564 "regulation
of cell cycle process" evidence=RCA] [GO:0032204 "regulation of
telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 SMART:SM00533 SMART:SM00534 GO:GO:0009506
GO:GO:0005524 EMBL:CP002687 GO:GO:0003684 EMBL:Z97343 GO:GO:0030983
GO:GO:0008094 GO:GO:0051026 EMBL:AL161546 GO:GO:0045143
GO:GO:0043073 GO:GO:0000795 GO:GO:0007128 KO:K08740 OMA:GFFIQMT
SUPFAM:SSF48334 GO:GO:0032300 EMBL:AY646927 IPI:IPI00525244
IPI:IPI00538174 PIR:B71443 RefSeq:NP_193469.2 UniGene:At.24376
UniGene:At.71316 ProteinModelPortal:F4JP48 SMR:F4JP48 IntAct:F4JP48
EnsemblPlants:AT4G17380.1 GeneID:827450 KEGG:ath:AT4G17380
TAIR:At4g17380 GO:GO:0010777 Uniprot:F4JP48
Length = 792
Score = 380 (138.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 112/397 (28%), Positives = 195/397 (49%)
Query: 619 ARKAVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLI-ELPANFKVPLNWAKVNS 675
AR+ E + +L + R++ + NL+ F + G I + K+P + +V
Sbjct: 371 ARRTFCDTSEAIHNLASKYREEFNLPNLKLPFNNRQGFFFRIPQKEVQGKLPNKFTQVVK 430
Query: 676 TKKTIRYHSPEVLTA-LDQLALANEEL--TIVC-RAAWDSFLKEFGGYYAEFXXXXXXXX 731
K I S E+ + + + A E T C A D+ ++
Sbjct: 431 HGKNIHCSSLELASLNVRNKSAAGECFIRTETCLEALMDAIREDISALTLLAEVLCLLDM 490
Query: 732 XXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAER 791
+ RP D P+ I +GRHP+L++I D FV N + +E
Sbjct: 491 IVNSFAHTISTKPVDRYSRPELTDSG-PLAID--AGRHPILESIHND-FVSNSIFM-SEA 545
Query: 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
++ GPNM GKS Y++QV L+ I+AQ+G +VPA A + V+D I+TRMG D+++
Sbjct: 546 TNMLVVMGPNMSGKSTYLQQVCLVVILAQIGCYVPARFATIRVVDRIFTRMGTMDNLESN 605
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911
STF+ E+ E ++I++N T +SL+++DELGR TS+ DG+A+A++ +YLL K +F
Sbjct: 606 SSTFMTEMRETAFIMQNVTNRSLIVMDELGRATSSSDGLAMAWSCCEYLLS-LKAYTVFA 664
Query: 912 THYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSE-SSFGF 970
TH +A++ T + +V L H + D++ D + +++ G +G
Sbjct: 665 THMDSLAELATIYP------NVKVL--HFYVDIRDNRLD----FKFQLRDGTLHVPHYGL 712
Query: 971 KVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAK 1007
+A++A LP + I A +I ++ + + R++ K
Sbjct: 713 LLAEVAGLPSTVIDTARIITKRITDKENKRIELNCGK 749
Score = 80 (33.2 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 29/109 (26%), Positives = 57/109 (52%)
Query: 367 LAVQALALTIRHLKQFGLERIMCLGASFR-SLSGSME-MTLSANTLQQLEVLR--NNS-- 420
L++ A A TI+ ++ + ++ S + +GS + M + A +++ LE++ +N+
Sbjct: 129 LSLAAAAATIKWIE--AEKGVIVTNHSLTVTFNGSFDHMNIDATSVENLELIDPFHNALL 186
Query: 421 -NGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
++ +L + T T G+RLLR + PL D I+ RLD + E+
Sbjct: 187 GTSNKKRSLFQMFKTTKTAGGTRLLRANLLQPLKDIETINTRLDCLDEL 235
>UNIPROTKB|O43196 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IRD] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0051026
"chiasma assembly" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007136 "meiotic prophase II" evidence=TAS]
[GO:0007126 "meiosis" evidence=TAS] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 EMBL:BA000025 EMBL:CH471081 EMBL:AF129756
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 Reactome:REACT_111183
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
EMBL:AL662834 GO:GO:0045143 EMBL:AF134726 EMBL:CR936239
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 EMBL:CR925765
KO:K08741 OMA:NDLVFFY EMBL:AF048986 EMBL:AF048991 EMBL:AF048988
EMBL:AF048989 EMBL:AF048990 EMBL:AF034759 EMBL:AF070071
EMBL:AF070079 EMBL:AF070072 EMBL:AF070073 EMBL:AF070074
EMBL:AF070075 EMBL:AF070076 EMBL:AF070077 EMBL:AF070078
EMBL:BT007200 EMBL:AY943816 EMBL:BC001358 EMBL:BC002498
EMBL:BC041031 IPI:IPI00172593 IPI:IPI00219362 IPI:IPI00297780
IPI:IPI00647584 RefSeq:NP_002432.1 RefSeq:NP_079535.4
RefSeq:NP_751897.1 RefSeq:NP_751898.1 UniGene:Hs.647011
ProteinModelPortal:O43196 SMR:O43196 IntAct:O43196 STRING:O43196
PhosphoSite:O43196 PRIDE:O43196 DNASU:4439 Ensembl:ENST00000375703
Ensembl:ENST00000375740 Ensembl:ENST00000375742
Ensembl:ENST00000375750 Ensembl:ENST00000375755
Ensembl:ENST00000416549 Ensembl:ENST00000419269
Ensembl:ENST00000427735 Ensembl:ENST00000435700
Ensembl:ENST00000436192 Ensembl:ENST00000441395
Ensembl:ENST00000441401 Ensembl:ENST00000448617
Ensembl:ENST00000456839 Ensembl:ENST00000457742
Ensembl:ENST00000497157 Ensembl:ENST00000534153
Ensembl:ENST00000578225 GeneID:4439 KEGG:hsa:4439 UCSC:uc003nwu.2
UCSC:uc003nwv.2 UCSC:uc003nwx.2 CTD:4439 GeneCards:GC06P031707
H-InvDB:HIX0165917 H-InvDB:HIX0166738 H-InvDB:HIX0167237
H-InvDB:HIX0167372 HGNC:HGNC:7328 MIM:603382 neXtProt:NX_O43196
PharmGKB:PA31136 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z
PhylomeDB:O43196 ChiTaRS:MSH5 GenomeRNAi:4439 NextBio:17301
ArrayExpress:O43196 Bgee:O43196 CleanEx:HS_MSH5
Genevestigator:O43196 GermOnline:ENSG00000204410 GO:GO:0007136
Uniprot:O43196
Length = 834
Score = 379 (138.5 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 90/251 (35%), Positives = 145/251 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 539 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 595
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 655
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 656 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 715
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V GV+++S A A LP
Sbjct: 716 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLP 764
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 765 DKLVARGKEVS 775
Score = 76 (31.8 bits), Expect = 4.6e-34, Sum P(2) = 4.6e-34
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 367 LAVQALALTIRHL--KQFGLE------RIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN 418
L V+AL ++ L ++ G+E + LG F+ + + + +T L++ ++
Sbjct: 178 LTVRALGGLLKFLGRRRIGVELEDYNVSVPILG--FKKFMLTHLVNIDQDTYSVLQIFKS 235
Query: 419 NSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
S+ S Y G +L I+N +G +LLR W T P D +S+RLD +
Sbjct: 236 ESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVI 291
>UNIPROTKB|A2ABF0 [details] [associations]
symbol:MSH5 "cDNA FLJ39914 fis, clone SPLEN2018732, highly
similar to MutS protein homolog 5" species:9606 "Homo sapiens"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:BX248244 EMBL:CR759787 GO:GO:0006298
GO:GO:0030983 EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334
EMBL:CR759915 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AK097233
IPI:IPI00798222 SMR:A2ABF0 STRING:A2ABF0 Ensembl:ENST00000395853
Ensembl:ENST00000414412 Ensembl:ENST00000430216
Ensembl:ENST00000436004 Ensembl:ENST00000439816
Ensembl:ENST00000448169 HOGENOM:HOG000231215 Uniprot:A2ABF0
Length = 508
Score = 379 (138.5 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 90/251 (35%), Positives = 145/251 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 213 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 269
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 270 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 329
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 330 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 389
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V GV+++S A A LP
Sbjct: 390 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLP 438
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 439 DKLVARGKEVS 449
>UNIPROTKB|A2BEX4 [details] [associations]
symbol:MSH5-SAPCD1 "MutS protein homolog 5" species:9606
"Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX4 Ensembl:ENST00000414514
Ensembl:ENST00000414810 Ensembl:ENST00000437726
Ensembl:ENST00000454820 Ensembl:ENST00000466318
Ensembl:ENST00000495073 HGNC:HGNC:41994 Uniprot:A2BEX4
Length = 496
Score = 379 (138.5 bits), Expect = 7.4e-34, P = 7.4e-34
Identities = 90/251 (35%), Positives = 145/251 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 201 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 257
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 317
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 318 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 377
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V GV+++S A A LP
Sbjct: 378 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLP 426
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 427 DKLVARGKEVS 437
>UNIPROTKB|H9L224 [details] [associations]
symbol:H9L224 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 GeneTree:ENSGT00550000074949
EMBL:AADN02030667 Ensembl:ENSGALT00000035738 Uniprot:H9L224
Length = 261
Score = 378 (138.1 bits), Expect = 9.4e-34, P = 9.4e-34
Identities = 80/154 (51%), Positives = 98/154 (63%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTF 148
YTPLE Q +E+K +Y D +L +E GYK+RFFGEDAE+A+K L I H DHNFMTASIPT
Sbjct: 101 YTPLELQFIEMKKRYKDAILCVECGYKYRFFGEDAEIASKELNICCHQDHNFMTASIPTH 160
Query: 149 RLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXX----- 203
RL VHVRRLV G KVGV+KQ ETAA+KA G K+ F R L+ALYTK+TL
Sbjct: 161 RLFVHVRRLVAKGHKVGVIKQMETAALKAAGENKSSLFSRKLTALYTKSTLIGEDILFKL 220
Query: 204 --XXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNG 235
NYL+C+ ++ NV + G
Sbjct: 221 DDSVDVEEVTTDVPDNYLLCICENGENVKNRKKG 254
>UNIPROTKB|F1N8B7 [details] [associations]
symbol:F1N8B7 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] [GO:0000795 "synaptonemal complex"
evidence=IEA] [GO:0007129 "synapsis" evidence=IEA] [GO:0007292
"female gamete generation" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007129
GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:AADN02049793 IPI:IPI00814446
Ensembl:ENSGALT00000004315 Uniprot:F1N8B7
Length = 791
Score = 378 (138.1 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 94/275 (34%), Positives = 148/275 (53%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R ++ RP F H HI GRHP+++ + FV N N +IITGPN
Sbjct: 497 ARENSYCRPRFTQRHG---FHIKDGRHPLME-LCAKTFVANPVNSGEATRRIKIITGPNS 552
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA +GS+VPA+ AE+ +DGIYTR+ +S+ G STF+ +LN+
Sbjct: 553 SGKSIYLKQVGLIIFMALIGSYVPAAEAEIGAIDGIYTRIHTRESVSVGLSTFMIDLNQV 612
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH-KKCMVLFV-THYPKIADI 920
+ + N T +SLV++DE G+GT+T DG+A+ A L Y + +C +FV T++ + +
Sbjct: 613 AKAVNNATERSLVLIDEFGKGTNTLDGLALLAAVLKYWINQGTQCPQVFVSTNFHSLMQL 672
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD-VTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ T + YL M++ D D + + Y++ GVS S +A LA +P
Sbjct: 673 ELL----PDTPLLEYLA-------METHQDGDELVFFYQIKQGVSTVSHAANIAALAGMP 721
Query: 980 PSCISRATVIAAKLE-AEVSSRVQNRSAKRDLLVK 1013
I R ++ + + R+ + S K D + K
Sbjct: 722 AKIIERGVEVSELIRNGKAIKRIDHPS-KGDQMEK 755
Score = 70 (29.7 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 28/114 (24%), Positives = 56/114 (49%)
Query: 367 LAVQALALTIRHL--KQFGLE----RIMCLGASFRSLSGSMEMTLSANTLQQLEVLRNN- 419
L ++AL +++L ++ G+E I +FR S + + +T L++ +++
Sbjct: 136 LMIRALGGLLKYLDRRRVGVELEESSIAVPVLAFRKFVLSETVNIDQDTYCVLQIFKSDI 195
Query: 420 -------SNGSEYGTLLH-IMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
S+G + G L+ I+N +G +LLR W+T P + ++ RLD +
Sbjct: 196 HPSVYKLSSGLKEGFSLYGILNRCRCKWGEKLLRLWLTRPTRNLTELNKRLDVI 249
Score = 46 (21.3 bits), Expect = 1.1e-33, Sum P(3) = 1.1e-33
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 216 SNYLVCVVDDDGNVGKIRNGVF 237
+N+L + D D N GKI +F
Sbjct: 70 ANFLTSLADSDSNKGKIEIVLF 91
>UNIPROTKB|A2BEX2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
EMBL:CR759915 UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449
ChiTaRS:MSH5 EMBL:BX248133 SMR:A2BEX2 Ensembl:ENST00000426512
Ensembl:ENST00000442688 Uniprot:A2BEX2
Length = 497
Score = 370 (135.3 bits), Expect = 6.8e-33, P = 6.8e-33
Identities = 90/252 (35%), Positives = 145/252 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 201 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 257
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE- 861
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 317
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIAD 919
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ +
Sbjct: 318 VAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQ 377
Query: 920 IKTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQL 978
++ G + V YLT M++ D D+ + Y+V GV+++S A A L
Sbjct: 378 LQLLPQGPL----VQYLT-------METCEDGNDLVFFYQVCEGVAKASHASHTAAQAGL 426
Query: 979 PPSCISRATVIA 990
P ++R ++
Sbjct: 427 PDKLVARGKEVS 438
>UNIPROTKB|B4DZX3 [details] [associations]
symbol:MSH5 "cDNA FLJ54211, highly similar to MutS protein
homolog 5" species:9606 "Homo sapiens" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:AK303129
IPI:IPI01015677 SMR:B4DZX3 STRING:B4DZX3 Ensembl:ENST00000431848
Ensembl:ENST00000547775 Ensembl:ENST00000549618
Ensembl:ENST00000551879 Uniprot:B4DZX3
Length = 533
Score = 379 (138.5 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 90/251 (35%), Positives = 145/251 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 238 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 294
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 295 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 354
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 355 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 414
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V GV+++S A A LP
Sbjct: 415 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQVCEGVAKASHASHTAAQAGLP 463
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 464 DKLVARGKEVS 474
>TAIR|locus:2092404 [details] [associations]
symbol:MSH5 "AT3G20475" species:3702 "Arabidopsis
thaliana" [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0005524 "ATP binding"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006200
"ATP catabolic process" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IEA;ISS] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0000794 "condensed nuclear chromosome"
evidence=IDA] [GO:0007131 "reciprocal meiotic recombination"
evidence=RCA;IMP] [GO:0051026 "chiasma assembly" evidence=IMP]
[GO:0006302 "double-strand break repair" evidence=RCA] [GO:0006312
"mitotic recombination" evidence=RCA] [GO:0007059 "chromosome
segregation" evidence=RCA] [GO:0007062 "sister chromatid cohesion"
evidence=RCA] [GO:0007129 "synapsis" evidence=RCA] [GO:0009691
"cytokinin biosynthetic process" evidence=RCA] [GO:0010332
"response to gamma radiation" evidence=RCA] [GO:0032204 "regulation
of telomere maintenance" evidence=RCA] [GO:0032504 "multicellular
organism reproduction" evidence=RCA] [GO:0042138 "meiotic DNA
double-strand break formation" evidence=RCA] [GO:0043247 "telomere
maintenance in response to DNA damage" evidence=RCA] [GO:0045132
"meiotic chromosome segregation" evidence=RCA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:CP002686
GO:GO:0003684 GO:GO:0030983 GO:GO:0008094 GO:GO:0051026
EMBL:AB024036 GO:GO:0045143 GO:GO:0043073 GO:GO:0000795
SUPFAM:SSF48334 GO:GO:0032300 GO:GO:0010777 EMBL:EF471448
EMBL:AK221687 EMBL:AK230222 EMBL:BT012280 IPI:IPI00532145
RefSeq:NP_188683.3 UniGene:At.50208 ProteinModelPortal:F4JEP5
SMR:F4JEP5 EnsemblPlants:AT3G20475.1 GeneID:821593
KEGG:ath:AT3G20475 TAIR:At3g20475 KO:K08741 OMA:NDLVFFY
Uniprot:F4JEP5
Length = 807
Score = 358 (131.1 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 87/278 (31%), Positives = 152/278 (54%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+ N+VRPV + + I +GRH VL + +D F+PNDT ++ + IITGPN
Sbjct: 518 AHQNNYVRPVLTVES---LLDIRNGRH-VLQEMAVDTFIPNDTEIN-DNGRIHIITGPNY 572
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QVALI ++ +GSFVPA +A + + D I+ MG S + +STF+ +L++
Sbjct: 573 SGKSIYVKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMG-SKFMTAEQSTFMIDLHQV 631
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFVTHYPKIADIK 921
+LR T++SL ++DE G+GT T DG+ + T+ + + V+ TH + ++
Sbjct: 632 GMMLRQATSRSLCLLDEFGKGTLTEDGIGLLGGTISHFATCAEPPRVVVCTH---LTELL 688
Query: 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPS 981
+ V + + T + +S + +++ +LY+++PG + S+G A LA +P
Sbjct: 689 NESCLPVSE-KIKFYTMSVLRPDTESANMEEIVFLYRLIPGQTLLSYGLHCALLAGVPEE 747
Query: 982 CISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQEQ 1019
+ RA ++ E+ N + + L K+S Q+Q
Sbjct: 748 VVKRAAIVLDAFES-------NNNVDKLSLDKISSQDQ 778
Score = 81 (33.6 bits), Expect = 2.4e-32, Sum P(2) = 2.4e-32
Identities = 27/91 (29%), Positives = 43/91 (47%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYG--------TLLHIMNHTLTIYGSRLLRRWVTHPLCD 454
+ L A + L++ + + + S G ++ +MN T G RLLR W P+ D
Sbjct: 183 LKLDAAAHEALQIFQTDKHPSHMGIGRAKEGFSVFGMMNKCATPMGRRLLRSWFMRPILD 242
Query: 455 RNLISARLDAVS---EIAESMGSYR-TSESV 481
++ RL+A+S E M S R T +SV
Sbjct: 243 LEVLDRRLNAISFFISSVELMASLRETLKSV 273
Score = 42 (19.8 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 100 KTKYPDVLLMIE-VGYKFRFFGEDAEMAA 127
K K P ++ I+ +GY FGE + A
Sbjct: 406 KEKLPPCIVYIQQIGYLMCIFGEKLDETA 434
>UNIPROTKB|J9NUN0 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
GeneTree:ENSGT00550000074977 EMBL:AAEX03008217 EMBL:AAEX03008216
Ensembl:ENSCAFT00000043640 Uniprot:J9NUN0
Length = 725
Score = 364 (133.2 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 88/251 (35%), Positives = 143/251 (56%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN +R ++ITGPN
Sbjct: 430 ARDYGYSRPRY--SPQLLGVRIQNGRHPLME-LCARTFVPNSAECGGDRGRVKVITGPNS 486
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 487 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 546
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFV-THYPKIADI 920
+ + N T QSLV++DE G+GT+T DG+A+ A L + L C +FV T++ + +
Sbjct: 547 AKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQL 606
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V G++++S A A LP
Sbjct: 607 QLLPQGPL----VQYLT-------METCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLP 655
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 656 DQLLTRGKEVS 666
Score = 72 (30.4 bits), Expect = 2.6e-32, Sum P(2) = 2.6e-32
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 420 SNGSEYG-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
++G + G +L I+N +G +LLR W T P D +++RLD +
Sbjct: 136 ASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVI 182
>MGI|MGI:1329021 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10090 "Mus
musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000795 "synaptonemal complex" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0007126 "meiosis"
evidence=IEA] [GO:0007127 "meiosis I" evidence=IMP] [GO:0007129
"synapsis" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0007292 "female gamete generation"
evidence=IMP] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
MGI:MGI:1329021 GO:GO:0005524 GO:GO:0005654 EMBL:AF109905
GO:GO:0006298 Reactome:REACT_120463 GO:GO:0030983 GO:GO:0007292
GO:GO:0007131 Reactome:REACT_27235 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
EMBL:AF397035 EMBL:AF397036 KO:K08741 GeneTree:ENSGT00550000074977
CTD:4439 HOVERGEN:HBG001449 OrthoDB:EOG4WSW8Z EMBL:AF146227
EMBL:AF107352 IPI:IPI00323518 RefSeq:NP_001139687.1
RefSeq:NP_038628.2 UniGene:Mm.24192 ProteinModelPortal:Q9QUM7
SMR:Q9QUM7 STRING:Q9QUM7 PhosphoSite:Q9QUM7 PRIDE:Q9QUM7
Ensembl:ENSMUST00000007250 Ensembl:ENSMUST00000097338 GeneID:17687
KEGG:mmu:17687 UCSC:uc008cfc.2 HOGENOM:HOG000006649
InParanoid:Q9QUM7 NextBio:292260 Bgee:Q9QUM7 CleanEx:MM_MSH5
Genevestigator:Q9QUM7 GermOnline:ENSMUSG00000007035 Uniprot:Q9QUM7
Length = 833
Score = 366 (133.9 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 91/270 (33%), Positives = 151/270 (55%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + V+I +GRHP+++ + FVPN T+ ++ ++ITGPN
Sbjct: 538 ARDYGYSRPHYSPCIHGVRIR--NGRHPLME-LCARTFVPNSTDCGGDQGRVKVITGPNS 594
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ V+D I+TR+ + +SI G STF+ +LN+
Sbjct: 595 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQV 654
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFV-THYPKIADI 920
+ + N T SLV++DE G+GT++ DG+A+ A L + L C +FV T++ + +
Sbjct: 655 AKAVNNATEHSLVLIDEFGKGTNSVDGLALLAAVLRHWLALGPSCPHVFVATNFLSLVQL 714
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D +D+ + Y++ GV+ +S A A LP
Sbjct: 715 QLLPQGPL----VQYLT-------METCEDGEDLVFFYQLCQGVASASHASHTAAQAGLP 763
Query: 980 PSCISRATVIAAKLEAEVSSRVQNRSAKRD 1009
I+R ++ + + + N +R+
Sbjct: 764 DPLIARGKEVSDLIRSGKPIKATNELLRRN 793
Score = 70 (29.7 bits), Expect = 5.3e-32, Sum P(2) = 5.3e-32
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+++ +T L++ ++ S+ S Y G +L I+N +G +LLR W T P
Sbjct: 219 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGQKLLRLWFTRPTR 278
Query: 454 DRNLISARLDAV 465
+ +++RLD +
Sbjct: 279 ELRELNSRLDVI 290
Score = 45 (20.9 bits), Expect = 2.2e-29, Sum P(2) = 2.2e-29
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 755 DDHEPVQIHIC 765
D+ EP +IH+C
Sbjct: 42 DEEEPAEIHLC 52
>UNIPROTKB|F1PBG8 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
OMA:NDLVFFY GeneTree:ENSGT00550000074977 EMBL:AAEX03008217
EMBL:AAEX03008216 Ensembl:ENSCAFT00000000966 Uniprot:F1PBG8
Length = 857
Score = 364 (133.2 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 88/251 (35%), Positives = 143/251 (56%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN +R ++ITGPN
Sbjct: 562 ARDYGYSRPRY--SPQLLGVRIQNGRHPLME-LCARTFVPNSAECGGDRGRVKVITGPNS 618
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 619 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 678
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFV-THYPKIADI 920
+ + N T QSLV++DE G+GT+T DG+A+ A L + L C +FV T++ + +
Sbjct: 679 AKAVNNATKQSLVLIDEFGKGTNTVDGLALLAAVLRHWLALGPTCPHIFVATNFLSLVQL 738
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V G++++S A A LP
Sbjct: 739 QLLPQGPL----VQYLT-------METCEDGDDLVFFYQVCDGLAKASHASHTAAQAGLP 787
Query: 980 PSCISRATVIA 990
++R ++
Sbjct: 788 DQLLTRGKEVS 798
Score = 72 (30.4 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 16/47 (34%), Positives = 27/47 (57%)
Query: 420 SNGSEYG-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
++G + G +L I+N +G +LLR W T P D +++RLD +
Sbjct: 268 ASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQDLEELNSRLDVI 314
Score = 41 (19.5 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 565 HSALLKRLILTASSPAVIGKAAK 587
HS LL+R IL +P I AK
Sbjct: 86 HSLLLERRILDEINPRSIVTTAK 108
>UNIPROTKB|F1M0A4 [details] [associations]
symbol:Msh3 "Protein Msh3" species:10116 "Rattus
norvegicus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR007695 InterPro:IPR016151
Pfam:PF01624 RGD:1563954 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
Gene3D:3.40.1170.10 SUPFAM:SSF55271 IPI:IPI00195438
Ensembl:ENSRNOT00000018312 ArrayExpress:F1M0A4 Uniprot:F1M0A4
Length = 186
Score = 358 (131.1 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 77/153 (50%), Positives = 96/153 (62%)
Query: 99 LKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLV 158
+K + D +L +E GYK+RFFGEDAE+AA+ L IY HLDHNFMTASIPT RL VHVRRLV
Sbjct: 1 VKQLHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLV 60
Query: 159 NAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL--------XXXXXXXXXXX 210
G+KVGVVKQTETAA+KA G K+ F R L+ALYTK+TL
Sbjct: 61 AKGYKVGVVKQTETAALKAIGDNKSSVFSRKLTALYTKSTLIGEDILDRTLDDSVNIDEA 120
Query: 211 XXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDV 243
+NYL+C+ ++ N+ + G G V
Sbjct: 121 VTDTSTNYLLCIYEEKENIKDKKKGNISFGIVV 153
>RGD|1303008 [details] [associations]
symbol:Msh5 "mutS homolog 5 (E. coli)" species:10116 "Rattus
norvegicus" [GO:0000710 "meiotic mismatch repair" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=ISO;IBA] [GO:0003674
"molecular_function" evidence=ND] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0007127 "meiosis I"
evidence=ISO] [GO:0007129 "synapsis" evidence=ISO] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0007292
"female gamete generation" evidence=IEA;ISO] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0008150
"biological_process" evidence=ND] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IRD] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 InterPro:IPR007861
Pfam:PF00488 Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 RGD:1303008 GO:GO:0005524 EMBL:BX883045
GO:GO:0006298 GO:GO:0030983 GO:GO:0007292 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 CTD:4439 HOVERGEN:HBG001449
OrthoDB:EOG4WSW8Z HOGENOM:HOG000006649 EMBL:BC083904
IPI:IPI00421996 RefSeq:NP_997701.2 UniGene:Rn.44043
ProteinModelPortal:Q6MG62 STRING:Q6MG62 PRIDE:Q6MG62
Ensembl:ENSRNOT00000060762 GeneID:294252 KEGG:rno:294252
UCSC:RGD:1303008 InParanoid:Q6MG62 NextBio:637830
Genevestigator:Q6MG62 GermOnline:ENSRNOG00000000857 Uniprot:Q6MG62
Length = 831
Score = 361 (132.1 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 89/256 (34%), Positives = 146/256 (57%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + V+I +GRHP+++ + FVPN T+ ++ ++ITGPN
Sbjct: 536 ARDYGYSRPHYSPCIQGVRIK--NGRHPLME-LCARTFVPNSTDCGGDQGRVKVITGPNS 592
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ V+D I+TR+ + +SI G STF+ +LN+
Sbjct: 593 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGVIDAIFTRIHSCESISLGLSTFMIDLNQV 652
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFV-THYPKIADI 920
+ + N T SLV++DE G+GT++ DG+A+ A L + L C +FV T++ + +
Sbjct: 653 AKAVNNATEHSLVLIDEFGKGTNSVDGLALLTAVLRHWLALGPSCPHIFVATNFLSLVQL 712
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y++ GV+ +S A A LP
Sbjct: 713 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQLCHGVASASHASYTAAQAGLP 761
Query: 980 PSCISRATVIAAKLEA 995
I+R ++ + +
Sbjct: 762 DPLIARGKEVSDSIRS 777
Score = 70 (29.7 bits), Expect = 1.9e-31, Sum P(2) = 1.9e-31
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+++ +T L++ ++ S+ S Y G +L I+N +G +LLR W T P
Sbjct: 217 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCRWGQKLLRLWFTRPTR 276
Query: 454 DRNLISARLDAV 465
+ +++RLD +
Sbjct: 277 ELRELNSRLDVI 288
Score = 45 (20.9 bits), Expect = 7.8e-29, Sum P(2) = 7.8e-29
Identities = 6/11 (54%), Positives = 9/11 (81%)
Query: 755 DDHEPVQIHIC 765
D+ EP +IH+C
Sbjct: 40 DEEEPAEIHLC 50
>UNIPROTKB|E1B8D2 [details] [associations]
symbol:MSH5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0007292 "female gamete generation" evidence=IEA]
[GO:0007129 "synapsis" evidence=IEA] [GO:0000795 "synaptonemal
complex" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007292
GO:GO:0007129 GO:GO:0000795 SUPFAM:SSF48334 OMA:NDLVFFY
GeneTree:ENSGT00550000074977 EMBL:DAAA02055381 IPI:IPI00710632
Ensembl:ENSBTAT00000026367 Uniprot:E1B8D2
Length = 831
Score = 354 (129.7 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 88/251 (35%), Positives = 140/251 (55%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + I +GRHP+++ + FVPN + ++ITGPN
Sbjct: 536 ARDYGYSRPRY--SPRLLGVRIQNGRHPLME-LCARTFVPNSAECGGDAGRVKVITGPNS 592
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 593 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 652
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE-HKKCMVLFV-THYPKIADI 920
+ + N T +SLV+VDE G+GT+T DG+A+ A + + L C +FV T++ + +
Sbjct: 653 AKAVNNATERSLVLVDEFGKGTNTVDGLALLAAVIRHWLALGPTCPHVFVATNFLSLVQL 712
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ G + V YLT M++ D D+ + Y+V GV+ +S A A LP
Sbjct: 713 QLLPRGPL----VQYLT-------METCEDGDDLVFFYQVCEGVARASHASHTAAQAGLP 761
Query: 980 PSCISRATVIA 990
I+R ++
Sbjct: 762 EKLIARGKQVS 772
Score = 74 (31.1 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+++ +T L++ ++ S+ S Y G +L I+N +G +LLR W T P
Sbjct: 217 VSIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCRCKWGEKLLRLWFTRPTQ 276
Query: 454 DRNLISARLDAV 465
D +++RLD +
Sbjct: 277 DLGELNSRLDVI 288
Score = 39 (18.8 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
Identities = 5/10 (50%), Positives = 8/10 (80%)
Query: 756 DHEPVQIHIC 765
+ EP +IH+C
Sbjct: 41 EEEPAEIHLC 50
>UNIPROTKB|Q5SSQ8 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL662834 EMBL:CR936239
SUPFAM:SSF48334 EMBL:CR925765 UniGene:Hs.647011 HGNC:HGNC:7328
HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00797508 SMR:Q5SSQ8
Ensembl:ENST00000436559 Ensembl:ENST00000458144 UCSC:uc011iri.2
Uniprot:Q5SSQ8
Length = 821
Score = 346 (126.9 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 82/220 (37%), Positives = 130/220 (59%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 556 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 612
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 613 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 672
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 673 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 732
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKV 959
+ G + V YLT M++ D D+ + Y+V
Sbjct: 733 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQV 761
Score = 75 (31.5 bits), Expect = 2.4e-30, Sum P(2) = 2.4e-30
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+ + +T L++ ++ S+ S Y G +L I+N +G +LLR W T P
Sbjct: 237 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 296
Query: 454 DRNLISARLDAV 465
D +S+RLD +
Sbjct: 297 DLGELSSRLDVI 308
>UNIPROTKB|B0V0L9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334 EMBL:CR759915
UniGene:Hs.647011 HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5
SMR:B0V0L9 Ensembl:ENST00000458424 Uniprot:B0V0L9
Length = 466
Score = 346 (126.9 bits), Expect = 2.5e-30, P = 2.5e-30
Identities = 82/220 (37%), Positives = 130/220 (59%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 201 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 257
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 317
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 318 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 377
Query: 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKV 959
+ G + V YLT M++ D D+ + Y+V
Sbjct: 378 QLLPQGPL----VQYLT-------METCEDGNDLVFFYQV 406
>UNIPROTKB|A3KGM4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00645968
SMR:A3KGM4 Ensembl:ENST00000427968 Ensembl:ENST00000458058
Uniprot:A3KGM4
Length = 727
Score = 341 (125.1 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 74/191 (38%), Positives = 117/191 (61%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 539 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 595
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 655
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 656 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 715
Query: 921 KTKFTGSVGTY 931
+ G + Y
Sbjct: 716 QLLPQGPLVQY 726
Score = 76 (31.8 bits), Expect = 3.7e-30, Sum P(2) = 3.7e-30
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 367 LAVQALALTIRHL--KQFGLE------RIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN 418
L V+AL ++ L ++ G+E + LG F+ + + + +T L++ ++
Sbjct: 178 LTVRALGGLLKFLGRRRIGVELEDYNVSVPILG--FKKFMLTHLVNIDQDTYSVLQIFKS 235
Query: 419 NSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
S+ S Y G +L I+N +G +LLR W T P D +S+RLD +
Sbjct: 236 ESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVI 291
>UNIPROTKB|E9PGY4 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR925765 HGNC:HGNC:7328
HGNC:HGNC:41994 IPI:IPI00790547 SMR:E9PGY4 Ensembl:ENST00000548094
Ensembl:ENST00000549604 Ensembl:ENST00000549746 Uniprot:E9PGY4
Length = 271
Score = 343 (125.8 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 78/203 (38%), Positives = 122/203 (60%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 71 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 127
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 128 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 187
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 188 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 247
Query: 921 KTKFTGSVGTYHVSYLTSHKVMG 943
+ G + V YL +V G
Sbjct: 248 QLLPQGPL----VQYLDWPRVSG 266
>UNIPROTKB|H0YF11 [details] [associations]
symbol:MSH5-SAPCD1 "Protein MSH5-SAPCD1" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
EMBL:AL662899 EMBL:CR759787 GO:GO:0006298 GO:GO:0030983
EMBL:AL662834 EMBL:CR936239 SUPFAM:SSF48334 EMBL:CR759915
EMBL:CR925765 EMBL:BX248133 HGNC:HGNC:41994 Ensembl:ENST00000469011
Ensembl:ENST00000476578 Ensembl:ENST00000480622
Ensembl:ENST00000482009 Ensembl:ENST00000492776
Ensembl:ENST00000498473 Uniprot:H0YF11
Length = 264
Score = 343 (125.8 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 78/203 (38%), Positives = 122/203 (60%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 64 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 120
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 121 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 180
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 181 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 240
Query: 921 KTKFTGSVGTYHVSYLTSHKVMG 943
+ G + V YL +V G
Sbjct: 241 QLLPQGPL----VQYLDWPRVSG 259
>UNIPROTKB|Q9UFG2 [details] [associations]
symbol:DKFZp434C1615 "Putative uncharacterized protein
DKFZp434C1615" species:9606 "Homo sapiens" [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006298 "mismatch repair" evidence=IEA]
[GO:0030983 "mismatched DNA binding" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 EMBL:BX248244 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HSSP:Q56215 UniGene:Hs.647011
HGNC:HGNC:7328 ChiTaRS:MSH5 EMBL:BX248133 EMBL:AL122094
IPI:IPI00945579 PIR:T34526 STRING:Q9UFG2 Ensembl:ENST00000554793
HOVERGEN:HBG066397 Uniprot:Q9UFG2
Length = 263
Score = 343 (125.8 bits), Expect = 5.3e-30, P = 5.3e-30
Identities = 78/203 (38%), Positives = 122/203 (60%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 63 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 119
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 120 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 179
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 180 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 239
Query: 921 KTKFTGSVGTYHVSYLTSHKVMG 943
+ G + V YL +V G
Sbjct: 240 QLLPQGPL----VQYLDWPRVSG 258
>UNIPROTKB|A3KGM9 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 IPI:IPI00790547
SMR:A3KGM9 Ensembl:ENST00000412975 UCSC:uc011iro.1 Uniprot:A3KGM9
Length = 401
Score = 341 (125.1 bits), Expect = 8.7e-30, P = 8.7e-30
Identities = 74/191 (38%), Positives = 117/191 (61%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 213 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 269
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 270 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQV 329
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADI 920
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + +
Sbjct: 330 AKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQL 389
Query: 921 KTKFTGSVGTY 931
+ G + Y
Sbjct: 390 QLLPQGPLVQY 400
>UNIPROTKB|A3KGM6 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00978527 SMR:A3KGM6 Ensembl:ENST00000416819 Uniprot:A3KGM6
Length = 728
Score = 332 (121.9 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 74/192 (38%), Positives = 117/192 (60%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 539 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 595
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE- 861
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 596 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 655
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIAD 919
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ +
Sbjct: 656 VAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQ 715
Query: 920 IKTKFTGSVGTY 931
++ G + Y
Sbjct: 716 LQLLPQGPLVQY 727
Score = 76 (31.8 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 367 LAVQALALTIRHL--KQFGLE------RIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN 418
L V+AL ++ L ++ G+E + LG F+ + + + +T L++ ++
Sbjct: 178 LTVRALGGLLKFLGRRRIGVELEDYNVSVPILG--FKKFMLTHLVNIDQDTYSVLQIFKS 235
Query: 419 NSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
S+ S Y G +L I+N +G +LLR W T P D +S+RLD +
Sbjct: 236 ESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVI 291
>UNIPROTKB|A3KGM5 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 EMBL:AL844216 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 HOGENOM:HOG000006649
IPI:IPI00893328 SMR:A3KGM5 Ensembl:ENST00000457917 Uniprot:A3KGM5
Length = 745
Score = 332 (121.9 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
Identities = 74/192 (38%), Positives = 117/192 (60%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 556 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 612
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE- 861
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 613 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 672
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIAD 919
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ +
Sbjct: 673 VAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQ 732
Query: 920 IKTKFTGSVGTY 931
++ G + Y
Sbjct: 733 LQLLPQGPLVQY 744
Score = 75 (31.5 bits), Expect = 5.3e-29, Sum P(2) = 5.3e-29
Identities = 21/72 (29%), Positives = 36/72 (50%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLC 453
+ + +T L++ ++ S+ S Y G +L I+N +G +LLR W T P
Sbjct: 237 VNIDQDTYSVLQIFKSESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTH 296
Query: 454 DRNLISARLDAV 465
D +S+RLD +
Sbjct: 297 DLGELSSRLDVI 308
>WB|WBGene00003421 [details] [associations]
symbol:msh-5 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0051026
"chiasma assembly" evidence=IMP] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0045143 "homologous chromosome
segregation" evidence=IMP] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0002119 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334
KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070 PIR:T20659
PIR:T20660 PIR:T43201 RefSeq:NP_502531.1 UniGene:Cel.19456
ProteinModelPortal:Q19272 STRING:Q19272 EnsemblMetazoa:F09E8.3
GeneID:178268 KEGG:cel:CELE_F09E8.3 UCSC:F09E8.3 CTD:178268
WormBase:F09E8.3 GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447
InParanoid:Q19272 OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3
Uniprot:Q19272
Length = 1369
Score = 336 (123.3 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 89/279 (31%), Positives = 149/279 (53%)
Query: 751 PVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIR 810
P VD EPV I HP+ ++ +FVPN + + IITGPN GKS Y++
Sbjct: 594 PALVD--EPV-IEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMK 650
Query: 811 QVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT 870
+ ++ ++ +GSFVPA A++ ++D I TRM DS+ G STF +++ + + LR T
Sbjct: 651 SIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKAT 710
Query: 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH--KKCMVLFVT-HYPKIADIKTKFTGS 927
SLVI+DE G+GT T G+++ + + Y + +C +F++ H+ + + T +
Sbjct: 711 GNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLET-N 769
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
+ T+ LT V+ K + YL+++ PG+ + SF VA+ +PP I RA
Sbjct: 770 IATF----LT-FTVLREAGGK----IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRAC 820
Query: 988 VIAAKLEA-----EVSSRVQNRSAKR---DLLVKLSDQE 1018
I L+A E+ + V N + K+ D+ V L+D++
Sbjct: 821 RIYKALKAGTLLKEIKAEVSNDNEKQLVEDMDVVLADED 859
Score = 77 (32.2 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 408 NTLQQLEVL-RNNSNGSEYG---TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLD 463
NT+Q L++L + N +G +L +M+ + G + LR+W +P DR+ + +R
Sbjct: 283 NTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQK 342
Query: 464 AV 465
V
Sbjct: 343 CV 344
Score = 38 (18.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 470 ESMGSYRTSESVGQHDEKNSD 490
+S +Y T E+ + +EK D
Sbjct: 157 DSSLAYSTDETTAEKEEKEED 177
>UNIPROTKB|Q19272 [details] [associations]
symbol:msh-5 "MutS protein homolog 5" species:6239
"Caenorhabditis elegans" [GO:0005634 "nucleus" evidence=IMP]
[GO:0007131 "reciprocal meiotic recombination" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190
Pfam:PF05192 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
GO:GO:0005524 GO:GO:0009792 GO:GO:0040007 GO:GO:0002119
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 KO:K08741 EMBL:AF271389 EMBL:Z73896 EMBL:AF070070
PIR:T20659 PIR:T20660 PIR:T43201 RefSeq:NP_502531.1
UniGene:Cel.19456 ProteinModelPortal:Q19272 STRING:Q19272
EnsemblMetazoa:F09E8.3 GeneID:178268 KEGG:cel:CELE_F09E8.3
UCSC:F09E8.3 CTD:178268 WormBase:F09E8.3
GeneTree:ENSGT00550000074977 HOGENOM:HOG000016447 InParanoid:Q19272
OMA:GRACRIY NextBio:900436 GermOnline:F09E8.3 Uniprot:Q19272
Length = 1369
Score = 336 (123.3 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 89/279 (31%), Positives = 149/279 (53%)
Query: 751 PVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIR 810
P VD EPV I HP+ ++ +FVPN + + IITGPN GKS Y++
Sbjct: 594 PALVD--EPV-IEAVELYHPISVLVVKKSFVPNQVSSGRDGIKASIITGPNACGKSVYMK 650
Query: 811 QVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT 870
+ ++ ++ +GSFVPA A++ ++D I TRM DS+ G STF +++ + + LR T
Sbjct: 651 SIGIMVFLSHIGSFVPARHAKIGIVDRIVTRMFTVDSVLDGMSTFAKDVEQVALALRKAT 710
Query: 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH--KKCMVLFVT-HYPKIADIKTKFTGS 927
SLVI+DE G+GT T G+++ + + Y + +C +F++ H+ + + T +
Sbjct: 711 GNSLVIIDEFGKGTMTEVGLSLLASVMTYWMNRGADRCPHIFLSSHFHALPNYIPLET-N 769
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
+ T+ LT V+ K + YL+++ PG+ + SF VA+ +PP I RA
Sbjct: 770 IATF----LT-FTVLREAGGK----IKYLFRMTPGLVDCSFALSVAKEEGIPPPVIGRAC 820
Query: 988 VIAAKLEA-----EVSSRVQNRSAKR---DLLVKLSDQE 1018
I L+A E+ + V N + K+ D+ V L+D++
Sbjct: 821 RIYKALKAGTLLKEIKAEVSNDNEKQLVEDMDVVLADED 859
Score = 77 (32.2 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 408 NTLQQLEVL-RNNSNGSEYG---TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLD 463
NT+Q L++L + N +G +L +M+ + G + LR+W +P DR+ + +R
Sbjct: 283 NTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCLRKWFRNPTTDRDDLVSRQK 342
Query: 464 AV 465
V
Sbjct: 343 CV 344
Score = 38 (18.4 bits), Expect = 1.4e-24, Sum P(2) = 1.4e-24
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 470 ESMGSYRTSESVGQHDEKNSD 490
+S +Y T E+ + +EK D
Sbjct: 157 DSSLAYSTDETTAEKEEKEED 177
>UNIPROTKB|A2BEX3 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:BX248244 GO:GO:0006298 GO:GO:0030983 SUPFAM:SSF48334
HGNC:HGNC:7328 HOVERGEN:HBG001449 ChiTaRS:MSH5 EMBL:BX248133
SMR:A2BEX3 Ensembl:ENST00000444225 Uniprot:A2BEX3
Length = 467
Score = 337 (123.7 bits), Expect = 2.3e-28, P = 2.3e-28
Identities = 82/221 (37%), Positives = 130/221 (58%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 201 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 257
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE- 861
GKS Y++QV LI MA VGSFVPA AE+ +D I+TR+ + +SI G STF+ +LN+
Sbjct: 258 SGKSIYLKQVGLITFMALVGSFVPAEEAEIGAVDAIFTRIHSCESISLGLSTFMIDLNQQ 317
Query: 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIAD 919
+ + N TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ +
Sbjct: 318 VAKAVNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQ 377
Query: 920 IKTKFTGSVGTYHVSYLTSHKVMGPMDSKSD-QDVTYLYKV 959
++ G + V YLT M++ D D+ + Y+V
Sbjct: 378 LQLLPQGPL----VQYLT-------METCEDGNDLVFFYQV 407
>SGD|S000001891 [details] [associations]
symbol:MSH4 "Protein involved in meiotic recombination"
species:4932 "Saccharomyces cerevisiae" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0003677 "DNA binding" evidence=IEA;IPI]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IMP] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0007126 "meiosis" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0030983 "mismatched
DNA binding" evidence=IEA;IBA] [GO:0051026 "chiasma assembly"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IRD]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0000228 "nuclear
chromosome" evidence=IDA] [GO:0045143 "homologous chromosome
segregation" evidence=IBA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 SGD:S000001891 GO:GO:0005524 EMBL:D50617
EMBL:BK006940 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 GeneTree:ENSGT00550000074897 KO:K08740
Gene3D:3.30.420.110 SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:U13999
PIR:A55201 RefSeq:NP_116652.1 ProteinModelPortal:P40965 SMR:P40965
DIP:DIP-2426N IntAct:P40965 MINT:MINT-565232 STRING:P40965
EnsemblFungi:YFL003C GeneID:850545 KEGG:sce:YFL003C
HOGENOM:HOG000094365 OMA:MSGKSVY OrthoDB:EOG4VHPFT NextBio:966313
Genevestigator:P40965 GermOnline:YFL003C Uniprot:P40965
Length = 878
Score = 295 (108.9 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 73/225 (32%), Positives = 114/225 (50%)
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
EE+ ++ D L + + +E + N+ P+F ++
Sbjct: 540 EEILLLSEETVDELLDKIATHISELFMIAEAVAILDLVCSFTYNLKENNYTIPIFTNN-- 597
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
+ I RHP+L+ +L NFVPN + QIITG NM GKS Y++QVALI IM
Sbjct: 598 ---LLIRDSRHPLLEKVL-KNFVPNTISSTKHSSSLQIITGCNMSGKSVYLKQVALICIM 653
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
AQ+GS +PA V ++ R+ +DS++ S F E+ E +Y L + ++L+I+D
Sbjct: 654 AQMGSGIPALYGSFPVFKRLHARV-CNDSMELTSSNFGFEMKEMAYFLDDINTETLLILD 712
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923
ELGRG+S DG ++ A ++LL + V TH+ I I +K
Sbjct: 713 ELGRGSSIADGFCVSLAVTEHLLR-TEATVFLSTHFQDIPKIMSK 756
Score = 97 (39.2 bits), Expect = 6.1e-27, Sum P(2) = 6.1e-27
Identities = 53/230 (23%), Positives = 97/230 (42%)
Query: 244 RLGVVAVEISTGDVVYGEFNDG--FLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML-LAY 300
R+G+ + +TG + +F D ++R L+ K+ +
Sbjct: 119 RIGLCIINCNTGQMYLSDFMDSQIYIRV-VHKLQIYQPTEILIPSSSLAPTVSKLATMIK 177
Query: 301 AGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEG 360
A V++E SR CF LA + Y + +DT + + + + + + +A
Sbjct: 178 FNVAETVKIEEGSRKCFNSQDGLAAITK-Y--LMDDTKKDLKIEEI-IDKTFALCAASAA 233
Query: 361 IMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN-- 418
I M ++ ++ + R+L F RI F +M + + T++ LE++ N
Sbjct: 234 ISYMEEI----ISKSSRNLNAFRKLRIQ-----FEGTENTM--LIDSKTVRGLELVENKL 282
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEI 468
+ NG +L ++ T T G R LR + PL DR I RL+A+ E+
Sbjct: 283 DKNGI---SLWKFLDTTSTKMGQRSLRNSILQPLTDRGSIEMRLEALEEL 329
>DICTYBASE|DDB_G0284747 [details] [associations]
symbol:msh5 "mutS homolog" species:44689
"Dictyostelium discoideum" [GO:0030983 "mismatched DNA binding"
evidence=IEA;IBA] [GO:0006298 "mismatch repair" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA;ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=ISS;IBA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0003684 "damaged DNA
binding" evidence=IRD] [GO:0000710 "meiotic mismatch repair"
evidence=IRD] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 dictyBase:DDB_G0284747
GO:GO:0005524 GenomeReviews:CM000153_GR EMBL:AAFI02000071
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 GO:GO:0008094
GO:GO:0051026 GO:GO:0045143 GO:GO:0000795 eggNOG:COG0249
SUPFAM:SSF48334 SUPFAM:SSF53150 KO:K08741 RefSeq:XP_638383.1
EnsemblProtists:DDB0231220 GeneID:8624752 KEGG:ddi:DDB_G0284747
InParanoid:Q54P75 OMA:FAAELDC ProtClustDB:CLSZ2728934
Uniprot:Q54P75
Length = 880
Score = 301 (111.0 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 64/184 (34%), Positives = 111/184 (60%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+ V+P+ + + ++I SGRH ++ + NF+PNDT + I++GPN GKS
Sbjct: 548 DLVKPIISTEQQEIEIQ--SGRH-LIQEYCVTNFIPNDTQNDPTKPVV-IVSGPNQSGKS 603
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
YI+QVALI + Q+GS+VPA SA + + D IYTR+ + +S S+F+ + + + +
Sbjct: 604 IYIKQVALIVFLGQIGSYVPAKSATISLFDHIYTRISSRESNAISESSFMIDCKQIAQMT 663
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL-EHKKCMVLFV-THYPKIADIKTKF 924
R T++SL+I+DE G+GT+ DG+++ Y L +LL + F+ TH+ + ++ +
Sbjct: 664 RFATSRSLLIIDEYGKGTNPLDGISLLYGLLVFLLTKSPSTPKTFICTHFYEFFELISNS 723
Query: 925 TGSV 928
T S+
Sbjct: 724 TDSI 727
Score = 68 (29.0 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 20/73 (27%), Positives = 43/73 (58%)
Query: 916 KIADIK-TKFTGSVGTYHVS-YLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
K D++ T T + T + + + T++K+ ++K ++ + + YK+ G+S SSFG A
Sbjct: 751 KFLDLQSTNTTTNTKTNNNNIFNTTNKITNT-NNKPNEFIPF-YKLKEGISSSSFGILCA 808
Query: 974 QLAQLPPSCISRA 986
++A + + ++RA
Sbjct: 809 KIAGVNENVVNRA 821
Score = 66 (28.3 bits), Expect = 1.2e-26, Sum P(3) = 1.2e-26
Identities = 34/131 (25%), Positives = 55/131 (41%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYG--------TLLHIMNHTLTIYGSRLLRRWVTHPLCD 454
+ L NTL L++ N ++ S Y +L + + T T G +LL+ W P +
Sbjct: 225 LLLDNNTLFSLQIFSNQNHPSCYSFGNSKEGLSLFGLFDKTKTTMGKKLLKTWFMRPSRN 284
Query: 455 RNLISARLDAVSEIAESMGSYRTSESVGQHDEKN-SDVTIVEPQFYYILSSVLTSLGRSP 513
R +I R + + + S E + + KN D+ I ILS + +S S
Sbjct: 285 RFVIEERQNLIQFFSSQENSSLKFELLD--NLKNIKDLKI-------ILSRISSSQNPSK 335
Query: 514 DIQRGITRIFH 524
D I + FH
Sbjct: 336 DFI-SIYKTFH 345
>CGD|CAL0002525 [details] [associations]
symbol:orf19.2579 species:5476 "Candida albicans" [GO:0000228
"nuclear chromosome" evidence=IEA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 InterPro:IPR007861 Pfam:PF00488 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 PROSITE:PS00486 SMART:SM00533
SMART:SM00534 CGD:CAL0002525 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AACQ01000044 EMBL:AACQ01000043 KO:K08740
SUPFAM:SSF48334 SUPFAM:SSF53150 RefSeq:XP_718245.1
RefSeq:XP_718341.1 ProteinModelPortal:Q5A989 STRING:Q5A989
GeneID:3639992 GeneID:3640161 KEGG:cal:CaO19.10111
KEGG:cal:CaO19.2579 Uniprot:Q5A989
Length = 803
Score = 299 (110.3 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 77/232 (33%), Positives = 129/232 (55%)
Query: 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ 820
++ I HP+L NFV N+ + + E +ITG NM GKS Y+RQ+A + IMAQ
Sbjct: 520 EVTIMRSLHPILGGNN-SNFVANNYSCNHELSRIHVITGANMSGKSVYLRQIAYLVIMAQ 578
Query: 821 VGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDEL 880
+G FVPA A + + + +Y+R+ +SD++ S+F +E++E + IL + SL+++DEL
Sbjct: 579 MGCFVPAEYARMRIFNSLYSRI-SSDNVDINASSFSKEMSETAVILNDSDGDSLILIDEL 637
Query: 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHK 940
GRG+S DG +I A L+ L+ K+ V+ TH+ IA + V T H+ + ++
Sbjct: 638 GRGSSLTDGFSICLAILEDLI-CKEATVITTTHFRDIAQVLAN-KSCVVTAHMQTVETN- 694
Query: 941 VMGPMDSKSDQDVTYLYKVVPGVSES-SFGFKVAQLAQL-PPSCISRATVIA 990
G ++ K Y +V G + +G + A+++ L P I + V+A
Sbjct: 695 --GQLEMK--------YNLVLGRNGIVGYGIRFAEVSNLLPQELIEDSKVVA 736
Score = 84 (34.6 bits), Expect = 3.6e-26, Sum P(2) = 3.6e-26
Identities = 78/381 (20%), Positives = 142/381 (37%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLH-IMNHTLTIYGSRLLRRWVTHPLCDRNLISAR 461
M + T++ LE++ + SE GT L+ +N LT G R+LR + P N I R
Sbjct: 192 MLIDTCTVRDLELV---DSLSETGTTLYSFLNCCLTKMGMRILRTSILQPSTHENSIILR 248
Query: 462 LDAVSEIAESMGSYRTSESVGQH--DEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGI 519
++V E+ + + S +H D + T +EP+ + ++ + +
Sbjct: 249 SESVQELINDEDALISIRSSLKHTCDLEKVFSTFLEPRGLLSQEQEINNIILLKTVLQNT 308
Query: 520 TRIFHRTATPSEFIAVMQAILYAGKQLQQL-HIDGEYREKVTSKTLHSALLKRLILTASS 578
I S + V + + +Q L I EY +S L A
Sbjct: 309 FVIRKSIQNVSSHLLVQVKQILEHENVQHLLAIINEYIRNDCQWANNSTELANQRANAVK 368
Query: 579 PAVIGKA-------AKLLSTVNKEAADQGDLLNLMI-----ISNGQFSEVARARKAVQSA 626
V G LL V++ A + L + + IS G F ++ + S
Sbjct: 369 SGVNGLLDVSRRIRETLLEEVSELVAKLSEELEIFMEYRFEISRGFFIKIKGNNTDINSL 428
Query: 627 KEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPE 686
E L + + RK + +E M S + ++ + LN ++ +I ++P
Sbjct: 429 PEVLINRVKK-RKTIECTTIELMKQS--SRYNDIVSEITT-LNSTIIHDMYTSINSYTPI 484
Query: 687 VLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNK 746
+L + + L ++C A+ + L++ EF N
Sbjct: 485 LLMVSEAIGT----LDLLCSFAYFTSLQKDSYTCPEFAKEVTIMRSLHPILG----GNNS 536
Query: 747 NFVRPVFVDDHEPVQIHICSG 767
NFV + +HE +IH+ +G
Sbjct: 537 NFVANNYSCNHELSRIHVITG 557
>SGD|S000002313 [details] [associations]
symbol:MSH5 "Protein of the MutS family" species:4932
"Saccharomyces cerevisiae" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0030983 "mismatched DNA
binding" evidence=IEA;IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] [GO:0032300 "mismatch
repair complex" evidence=IRD] [GO:0003674 "molecular_function"
evidence=ND] [GO:0006298 "mismatch repair" evidence=IEA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 SGD:S000002313
GO:GO:0005524 EMBL:BK006938 GO:GO:0006298 GO:GO:0030983 EMBL:X97751
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 KO:K08741
GeneTree:ENSGT00550000074977 EMBL:L42517 EMBL:Z74202 PIR:S67702
RefSeq:NP_010127.1 ProteinModelPortal:Q12175 DIP:DIP-1457N
IntAct:Q12175 MINT:MINT-388063 STRING:Q12175 PRIDE:Q12175
EnsemblFungi:YDL154W GeneID:851401 KEGG:sce:YDL154W CYGD:YDL154w
HOGENOM:HOG000113662 OMA:SAFMIDL OrthoDB:EOG4W6S4H NextBio:968570
Genevestigator:Q12175 GermOnline:YDL154W Uniprot:Q12175
Length = 901
Score = 312 (114.9 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 79/263 (30%), Positives = 141/263 (53%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDT----NLHAEREYCQ--- 795
S +N+ P V+D E + + I +GRH + +T L DN++PN T L +E +C+
Sbjct: 579 SAERNYAEPQLVED-ECI-LEIINGRHALYETFL-DNYIPNSTMIDGGLFSELSWCEQNK 635
Query: 796 ----IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQG 851
++TG N GKS Y+ Q LI +AQ+G FVPA A + + D I TR+ +++ +
Sbjct: 636 GRIIVVTGANASGKSVYLTQNGLIVYLAQIGCFVPAERARIGIADKILTRIRTQETVYKT 695
Query: 852 RSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC-MVLF 910
+S+FL + + + L T +SL+++DE G+GT DG ++ + + + + +KC ++
Sbjct: 696 QSSFLLDSQQMAKSLSLATEKSLILIDEYGKGTDILDGPSLFGSIMLNMSKSEKCPRIIA 755
Query: 911 VTHYPKI--ADIKTKFTGSVGTYHVSYLTSHK--VMGPMDSKSDQD---VTYLYKVVPGV 963
TH+ ++ ++ T+ + Y L S K ++ D + +T+L+KV G+
Sbjct: 756 CTHFHELFNENVLTENIKGIKHYCTDILISQKYNLLETAHVGEDHESEGITFLFKVKEGI 815
Query: 964 SESSFGFKVAQLAQLPPSCISRA 986
S+ SFG A++ L + RA
Sbjct: 816 SKQSFGIYCAKVCGLSRDIVERA 838
Score = 61 (26.5 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 15/79 (18%), Positives = 34/79 (43%)
Query: 403 MTLSANTLQQLEVLRN-NSNGSE------YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDR 455
M L NT+ L + + G + + ++ + N + Y R+L+ W+ +PL ++
Sbjct: 247 MVLDENTISALHIFPTAHKLGHDKMMRNGFFSVFELFNQVSSDYARRILKSWLINPLTNK 306
Query: 456 NLISARLDAVSEIAESMGS 474
I R + + + +
Sbjct: 307 KRIETRYSIIRTLLDKQNA 325
>UNIPROTKB|Q7SCW0 [details] [associations]
symbol:NCU09384 "Predicted protein" species:367110
"Neurospora crassa OR74A" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 PROSITE:PS00486
SMART:SM00534 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 SUPFAM:SSF48334 HSSP:Q56215 KO:K08741
OrthoDB:EOG4W6S4H EMBL:AABX02000082 RefSeq:XP_963830.1
ProteinModelPortal:Q7SCW0 STRING:Q7SCW0
EnsemblFungi:EFNCRT00000009472 GeneID:3879979 KEGG:ncr:NCU09384
OMA:INVICER Uniprot:Q7SCW0
Length = 506
Score = 278 (102.9 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 64/203 (31%), Positives = 109/203 (53%)
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
++TGPN GKS Y++QVALI +A +GS+VP + A + V D I+TR+ ++ S F
Sbjct: 237 VLTGPNNSGKSIYMKQVALIIYLAHIGSYVPVTRATIGVTDRIFTRVATRETAMDDESAF 296
Query: 856 LEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE--HKKCMVLFVTH 913
+ +L +A++ + T +SL++ DE G+GT+ G A+ A L + LE + +L TH
Sbjct: 297 MTDLKQAAFSINFATRRSLILADEFGKGTTMEAGAAVFTAYLHHFLELDADRPRMLVSTH 356
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVA 973
+ + + + G V+Y + P + ++ +TYLY++V G +E S G A
Sbjct: 357 FHDVFN-RGFLKPEEG---VAYAHMEVRLNPEAEEREEHITYLYRLVHGRAEHSLGLMCA 412
Query: 974 QLAQLPPSCISRATVIAAKLEAE 996
+ + + RA I LE +
Sbjct: 413 AINHIEDDVLKRAGDILGMLERD 435
Score = 58 (25.5 bits), Expect = 3.5e-22, Sum P(2) = 3.5e-22
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 762 IHICSGRHPVLDTILLDNFVPND 784
I I GRHP L +L+ +F+PND
Sbjct: 185 IDIEGGRHP-LQELLVPSFIPND 206
>UNIPROTKB|I3LUG7 [details] [associations]
symbol:LOC100624532 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0006298 "mismatch repair" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR007696 InterPro:IPR007860 InterPro:IPR007861
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 Pfam:PF05188
Pfam:PF05190 Pfam:PF05192 SMART:SM00533 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 Gene3D:3.40.1170.10 SUPFAM:SSF55271
InterPro:IPR015536 PANTHER:PTHR11361:SF31
GeneTree:ENSGT00550000075024 EMBL:FP700151
Ensembl:ENSSSCT00000028816 OMA:DDNPARG Uniprot:I3LUG7
Length = 1011
Score = 284 (105.0 bits), Expect = 6.8e-21, P = 6.8e-21
Identities = 117/444 (26%), Positives = 195/444 (43%)
Query: 391 GASFRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
GA F + M L A TL LE+ N +NGS GTLL ++ T +G RLL++W+
Sbjct: 573 GAVFAK--ANQRMVLDAVTLNNLEIFLNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCA 630
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
PLC+ IS RLDA+ ++ + + SE V +K D+ + + + + S L S
Sbjct: 631 PLCNPYAISDRLDAIEDLM--VVPDKISEVVDLL-KKLPDLERLLSKIHNV-GSPLKSQN 686
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLK 570
PD R I ++ T + I + L K + ++ G E + S +LK
Sbjct: 687 H-PD-SRAI--MYEETTYSKKKIIDFLSALEGFKVICKIR--GIMEEVIDD--FKSKILK 738
Query: 571 RLILTASSPAVIGKAAKLLSTVNK-EAA---DQGDLLNLMIISNGQFSEVARARKAVQSA 626
+ +LT + G+ L +N+ + A ++ L+ G S+ +A ++
Sbjct: 739 Q-VLTLQTKNPEGRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIREN 797
Query: 627 KEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTI-RY 682
++ L + R ++G R + + + + +E+P NF +P + ++ STKK RY
Sbjct: 798 EQSLLEYLEKQRSRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRY 856
Query: 683 HSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXX 742
+ + L L A E + + F Y ++
Sbjct: 857 WTKTIEKKLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANY 916
Query: 743 SRNKN--FVRPVFV--DDHEPVQIHICSGRHP-VLDTILLDNFVPNDTNLHAERE----- 792
SR + RPV + + P +++ RHP + T D+F+PND + E E
Sbjct: 917 SRGGDGPMCRPVILLPGEDTPPFLYLKGSRHPCITKTFFGDDFIPNDILIGCEEEEEEND 976
Query: 793 --YCQIITGPNMGGKSCYIRQVAL 814
YC ++TGPNMGGKS +RQV L
Sbjct: 977 KAYCVLVTGPNMGGKSTLMRQVNL 1000
Score = 256 (95.2 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 174/749 (23%), Positives = 303/749 (40%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 257 TPGMRKWWQIKSQNFDLVIFYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 315
Query: 150 LNVHVRRLVNAGFKVGVVKQTETAAIK-------AHGPGKAGPFGRGLSALYTKATLXXX 202
+ LV G+KV V+QTET + AH R + + TK T
Sbjct: 316 FGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRVITKGT---Q 372
Query: 203 XXXXXXXXXXXXXSNYLVCVVD-DDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGE 261
S YL+ + + +D + G R V+G V V+ S G G+
Sbjct: 373 TYSVLEGDPSENYSKYLLSLKEKEDDSSGHTR--VYG--------VCFVDTSLGKFFIGQ 422
Query: 262 FNDG--FLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIG 319
F+D R G LS +T KM+L +S+++ F
Sbjct: 423 FSDDRHCSRFRTLVAHYPPVQVLFEKGS-LSTET-KMILK-GSLSSSLQEGLIPGSQFWD 479
Query: 320 GGALAEVMSLYENMGEDTLSNNEDQNMDVPE--QG-NHRSAIEGIM--NMPDLAVQALAL 374
G + L E D L NED + +P+ +G S G+ +LA+ AL
Sbjct: 480 AGKTLRTL-LEEGYFTDKL--NEDSGVMLPQVLKGMTSESDSIGLTPGEKSELALSALGG 536
Query: 375 TIRHLKQFGLERIMCLGASFRS--------LSGS----------MEMTLSANTLQQLEVL 416
+ +LK+ +++ + A+F +S S M L A TL LE+
Sbjct: 537 CVFYLKKCLIDQELLSMANFEEYIPLDSDVVSASRPGAVFAKANQRMVLDAVTLNNLEIF 596
Query: 417 RNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYR 476
N +NGS GTLL ++ T +G RLL++W+ PLC+ IS RLDA+ ++ + +
Sbjct: 597 LNATNGSPEGTLLEKIDTCHTPFGKRLLKQWLCAPLCNPYAISDRLDAIEDLM--VVPDK 654
Query: 477 TSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVM 536
SE V +K D+ + + + + S L S PD R I ++ T + I
Sbjct: 655 ISEVVDLL-KKLPDLERLLSKIHNV-GSPLKSQNH-PD-SRAI--MYEETTYSKKKIIDF 708
Query: 537 QAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNK-E 595
+ L K + ++ G E + S +LK+ +LT + G+ L +N+ +
Sbjct: 709 LSALEGFKVICKIR--GIMEEVIDD--FKSKILKQ-VLTLQTKNPEGRFPDLTVELNRWD 763
Query: 596 AA---DQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVS 652
A ++ L+ G S+ +A ++ ++ L + R ++G R + + +
Sbjct: 764 TAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLEYLEKQRSRIGCRTIVYWGIG 823
Query: 653 GITHLIELPANF---KVPLNWAKVNSTKKTI-RYHSPEVLTALDQLALANEELTIVCRAA 708
+ +E+P NF +P + ++ STKK RY + + L L A E + +
Sbjct: 824 RNRYQLEIPENFTTRNLPEEY-ELKSTKKGCKRYWTKTIEKKLANLINAEERRDVSLKDC 882
Query: 709 WDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN--FVRPVFV--DDHEPVQIHI 764
F Y ++ SR + RPV + + P +++
Sbjct: 883 MRRLFYNFDKNYKDWQAAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPGEDTPPFLYL 942
Query: 765 CSGRHP-VLDTILLDNFVPNDTNLHAERE 792
RHP + T D+F+PND + E E
Sbjct: 943 KGSRHPCITKTFFGDDFIPNDILIGCEEE 971
>UNIPROTKB|Q720J7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:265669 "Listeria
monocytogenes serotype 4b str. F2365" [GO:0003674
"molecular_function" evidence=ND] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00533 SMART:SM00534
Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 EMBL:AE017262 GenomeReviews:AE017262_GR GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_013840.1 ProteinModelPortal:Q720J7 STRING:Q720J7
GeneID:2799326 KEGG:lmf:LMOf2365_1241 PATRIC:20323712
Uniprot:Q720J7
Length = 785
Score = 262 (97.3 bits), Expect = 1.0e-18, P = 1.0e-18
Identities = 77/251 (30%), Positives = 126/251 (50%)
Query: 762 IHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV 821
+H+ + RHP+LD + V ND L E +ITGPN GGK+ ++ + L+ +MAQ
Sbjct: 302 VHLIAARHPLLDAAKV---VANDIYL-GEDFTTIVITGPNTGGKTITLKTLGLLTLMAQS 357
Query: 822 GSFVPASS-AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDEL 880
G +PA + + V + ++ +G SI+Q STF + IL N +SL++ DEL
Sbjct: 358 GLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTFSSHMTNIVSILGNVNQKSLILYDEL 417
Query: 881 GRGTSTHDGVAIAYATLDYLLEHKK-CMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSH 939
G GT +G A+A A LD H K V+ THYP++ K G Y+ + T+
Sbjct: 418 GAGTDPQEGAALAIAILD--ASHAKGASVVATTHYPEL-----KAYG----YNRVHATNA 466
Query: 940 KVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSS 999
V +++ S YK++ GV S F +++ L + I+ A + A+++
Sbjct: 467 SVEFNVETLSPT-----YKLLIGVPGRSNAFDISRRLGLSENIITEARSLVDTESADLND 521
Query: 1000 RVQNRSAKRDL 1010
+ + KR+L
Sbjct: 522 MISSLEEKRNL 532
>UNIPROTKB|A8J8E2 [details] [associations]
symbol:CHLREDRAFT_120228 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
SMART:SM00534 GO:GO:0005524 GO:GO:0009411 GO:GO:0003684
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 InterPro:IPR015536
PANTHER:PTHR11361:SF31 EMBL:DS496143 RefSeq:XP_001697747.1
EnsemblPlants:EDO99899 GeneID:5723369 KEGG:cre:CHLREDRAFT_120228
ProtClustDB:CLSN2703491 Uniprot:A8J8E2
Length = 86
Score = 234 (87.4 bits), Expect = 2.4e-18, P = 2.4e-18
Identities = 47/86 (54%), Positives = 60/86 (69%)
Query: 798 TGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857
+GPNMGGKS +RQ L I+AQVG++VPA S L +D ++ RMGA DSI G+STF
Sbjct: 1 SGPNMGGKSTLLRQTCLAAILAQVGAWVPAESLTLSPVDSLFVRMGARDSIMTGQSTFFI 60
Query: 858 ELNEASYILRNCTAQSLVIVDELGRG 883
EL E + +L T SLV++DELGRG
Sbjct: 61 ELAETAAMLARATPDSLVVLDELGRG 86
>UNIPROTKB|B1N483 [details] [associations]
symbol:EHI_019060 "DNA mismatch repair protein mutS,
putative" species:5759 "Entamoeba histolytica" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 GO:GO:0007131 GO:GO:0008094 GO:GO:0051026
GO:GO:0045143 GO:GO:0000795 EMBL:DS571351 RefSeq:XP_001913998.1
ProteinModelPortal:B1N483 STRING:B1N483 GeneID:6219997
KEGG:ehi:EHI_019060 EuPathDB:AmoebaDB:EHI_019060 InParanoid:B1N483
Uniprot:B1N483
Length = 225
Score = 231 (86.4 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 65/180 (36%), Positives = 101/180 (56%)
Query: 818 MAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIV 877
MA +G V AS+A++ + I+T+ +SDS S F + + S LR+ + SL+++
Sbjct: 1 MALLGCGVCASNAQIPLFSHIFTKFSSSDSSLSSLSAFTTDCSLLSTSLRHLSNDSLLLI 60
Query: 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT 937
DE G+GT DG+A+ ATL YL ++ PK I T F + +H Y+
Sbjct: 61 DEFGKGTHPSDGLALFIATLRYLQS-------LGSNAPKTI-ISTHF---ISFFH--YID 107
Query: 938 SHKVMG-PMD---SKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL 993
+K + MD ++S+ +T+LY +V G+S+SS+G A+LA LP S ISRA+ IA L
Sbjct: 108 LNKCVPLKMDVLLNQSNNSITFLYHLVNGISDSSYGIHCARLAHLPSSLISRASQIATSL 167
>UNIPROTKB|Q0JBW2 [details] [associations]
symbol:Os04g0507000 "Os04g0507000 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 GO:GO:0009411 GO:GO:0003684
EMBL:AP008210 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 SUPFAM:SSF82771 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 OMA:RGTETAK GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271
RefSeq:NP_001053261.1 UniGene:Os.74427 STRING:Q0JBW2 PRIDE:Q0JBW2
EnsemblPlants:LOC_Os04g42784.1 GeneID:4336345 KEGG:osa:4336345
Gramene:Q0JBW2 ProtClustDB:CLSN2694915 Uniprot:Q0JBW2
Length = 1132
Score = 246 (91.7 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 84/294 (28%), Positives = 136/294 (46%)
Query: 766 SGRHPV-LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSF 824
SG P LDT N + ND ++H+ I+TGPN GGKS +R V ++ G
Sbjct: 736 SGTFPYWLDTNQ-GNAILNDVHMHS----LFILTGPNGGGKSSMLRSVCAAALLGICGLM 790
Query: 825 VPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGT 884
VPA+SA + D I M A DS G+S+F E++E ++ TA+SLV++DE+ RGT
Sbjct: 791 VPAASAVIPHFDSIMLHMKAYDSPADGKSSFQIEMSEIRSLVCRATARSLVLIDEICRGT 850
Query: 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGP 944
T G IA + ++ L ++ C+ + TH I D+ + T K MG
Sbjct: 851 ETAKGTCIAGSIIERL-DNVGCIGIISTHLHGIFDLPLSL----------HNTDFKAMGT 899
Query: 945 MDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA---EVSSRV 1001
D+ + +K++ G+ S F+ A+ +P I RA + + + SS V
Sbjct: 900 --EIIDRCIQPTWKLMDGICRESLAFQTARKEGMPDLIIRRAEELYLAMSTNSKQTSSAV 957
Query: 1002 QNR-SAKRDLLVKLSDQEQEAQENMPVSPESFYLGRVEASEDLISAYRDLFLNL 1054
+ S + L ++ + + + SF L R E + + + L+L
Sbjct: 958 HHEISIANSTVNSLVEKPNYLRNGLELQSGSFGLLRKEIESVVTTICKKKLLDL 1011
Score = 64 (27.6 bits), Expect = 7.5e-18, Sum P(2) = 7.5e-18
Identities = 19/83 (22%), Positives = 39/83 (46%)
Query: 92 LEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI--YAHL-DHNFMTASIPTF 148
L ++++ K+K+P +L+ VG + G DA + + G+ + L + A P
Sbjct: 124 LNTEMLQFKSKFPREVLLCRVGDFYEAVGFDACILVEHAGLNPFGGLRSDSIPKAGCPVM 183
Query: 149 RLNVHVRRLVNAGFKVGVVKQTE 171
L + L G+ V +V++ +
Sbjct: 184 NLRQTLDDLTRCGYSVCIVEEIQ 206
Score = 41 (19.5 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 584 KAAKLLSTVNKEAADQGDLLN 604
K ++ +S V+++ QGDL N
Sbjct: 53 KVSRSISIVSRKMNKQGDLCN 73
>UNIPROTKB|A8JBH4 [details] [associations]
symbol:CHLREDRAFT_106717 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000710 "meiotic mismatch repair" evidence=IBA]
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0007131
"reciprocal meiotic recombination" evidence=IBA] [GO:0008094
"DNA-dependent ATPase activity" evidence=IBA] [GO:0009411 "response
to UV" evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] [GO:0045910 "negative regulation of DNA
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0009411
GO:GO:0003684 GO:GO:0007131 GO:GO:0000228 GO:GO:0043570
GO:GO:0045910 GO:GO:0008094 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032137 GO:GO:0000710 GO:GO:0032301 GO:GO:0032138
EMBL:DS496153 RefSeq:XP_001699298.1 EnsemblPlants:EDO98728
GeneID:5724848 KEGG:cre:CHLREDRAFT_106717 Uniprot:A8JBH4
Length = 111
Score = 219 (82.2 bits), Expect = 9.6e-17, P = 9.6e-17
Identities = 47/111 (42%), Positives = 71/111 (63%)
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGAS---------- 845
++TGPNM GKS Y++QV L+ ++AQ G VPA+ L + R+G +
Sbjct: 1 LVTGPNMSGKSTYLQQVGLLVVLAQAGCPVPAAHCCLPPFTALLGRLGTAMGGGAGAGGG 60
Query: 846 -DSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYA 895
D ++ GRS+FL E+ +A+++L +SLV++DELGRGTST DGV +A+A
Sbjct: 61 ADDLESGRSSFLTEMQDAAHVLSAAGPRSLVLLDELGRGTSTADGVGLAWA 111
>UNIPROTKB|Q76DY7 [details] [associations]
symbol:mutS2 "MutS2 protein" species:274 "Thermus
thermophilus" [GO:0000400 "four-way junction DNA binding"
evidence=IDA] [GO:0004519 "endonuclease activity" evidence=IDA]
[GO:0006200 "ATP catabolic process" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0045910 "negative regulation of
DNA recombination" evidence=IMP] [GO:0030983 "mismatched DNA
binding" evidence=IDA] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0016887 GO:GO:0006298
GO:GO:0004519 GO:GO:0045910 SMART:SM00463 PROSITE:PS50828
GO:GO:0045005 SUPFAM:SSF48334 GO:GO:0000400 KO:K07456
PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069 EMBL:AB107662
RefSeq:YP_144911.1 ProteinModelPortal:Q76DY7 GeneID:3169358
KEGG:ttj:TTHA1645 Uniprot:Q76DY7
Length = 744
Score = 243 (90.6 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 88/320 (27%), Positives = 144/320 (45%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ RP F + +E + HP++ + ++F ++ N +I+GPNM
Sbjct: 270 ARDLGLSRPAFGERYE-----LYRAFHPLIPDAVRNSFALDEKNR------ILLISGPNM 318
Query: 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEA 862
GGK+ ++ + L +MAQ G FV A A L D +Y +G S+Q+ STF L
Sbjct: 319 GGKTALLKTLGLAVLMAQSGLFVAAEKALLAWPDRVYADIGDEQSLQENLSTFAGHLRRL 378
Query: 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK-KCMVLFVTHYPKIADIK 921
+L T+ SLV++DELG GT +G A++ A L+ LLE K MV TH ++ +K
Sbjct: 379 REMLEEATSHSLVLIDELGSGTDPEEGAALSQAILEALLERGVKGMV--TTH---LSPLK 433
Query: 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPS 981
G G + S + + P Y++V GV S+ +A+ LP
Sbjct: 434 AFAQGREGIQNASMRFDLEALRPT-----------YELVLGVPGRSYALAIARRLALPEE 482
Query: 982 CISRATVI---AAKLEAEVSSRVQNR---SAKRDLLVKLSDQEQEAQENMPVSPESFYLG 1035
+ RA + +LEA + R A+R+ L + Q + ++ + F
Sbjct: 483 VLKRAEALLPEGGRLEALLERLEAERLALEAERERLRRELSQVERLRKALAEREARFEEE 542
Query: 1036 RVEASEDLISAYRDLFLNLK 1055
R E + L R L ++
Sbjct: 543 RAERLKALEEEVRAELLKVE 562
>TAIR|locus:2087193 [details] [associations]
symbol:MSH1 "AT3G24320" species:3702 "Arabidopsis
thaliana" [GO:0000228 "nuclear chromosome" evidence=IBA]
[GO:0000400 "four-way junction DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=ISS;IBA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006200 "ATP catabolic process" evidence=IBA]
[GO:0006298 "mismatch repair" evidence=ISS] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0009411 "response to UV"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IEA]
[GO:0032137 "guanine/thymine mispair binding" evidence=IBA]
[GO:0032138 "single base insertion or deletion binding"
evidence=IBA] [GO:0032301 "MutSalpha complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045910 "negative regulation of DNA recombination"
evidence=IBA] [GO:0032042 "mitochondrial DNA metabolic process"
evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0000002 "mitochondrial genome
maintenance" evidence=IGI;IMP] [GO:0009408 "response to heat"
evidence=IGI] [GO:0000278 "mitotic cell cycle" evidence=RCA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=RCA] [GO:0006261 "DNA-dependent DNA
replication" evidence=RCA] [GO:0006275 "regulation of DNA
replication" evidence=RCA] [GO:0006306 "DNA methylation"
evidence=RCA] [GO:0006342 "chromatin silencing" evidence=RCA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0009555 "pollen development" evidence=RCA]
[GO:0016444 "somatic cell DNA recombination" evidence=RCA]
[GO:0016568 "chromatin modification" evidence=RCA] [GO:0016572
"histone phosphorylation" evidence=RCA] [GO:0031047 "gene silencing
by RNA" evidence=RCA] [GO:0043687 "post-translational protein
modification" evidence=RCA] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0051567 "histone
H3-K9 methylation" evidence=RCA] [GO:0051726 "regulation of cell
cycle" evidence=RCA] InterPro:IPR000432 InterPro:IPR007695
InterPro:IPR016151 Pfam:PF00488 Pfam:PF01624 PROSITE:PS00486
SMART:SM00534 InterPro:IPR000305 Pfam:PF01541 GO:GO:0005739
GO:GO:0005524 GO:GO:0009507 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0009411 GO:GO:0003684 GO:GO:0009408 EMBL:AP000382
GO:GO:0007131 GO:GO:0000228 GO:GO:0043570 GO:GO:0045910
GO:GO:0008094 SUPFAM:SSF82771 eggNOG:COG0249 GO:GO:0000400
GO:GO:0032042 GO:GO:0032137 GO:GO:0000710 EMBL:AY191303
IPI:IPI00526404 RefSeq:NP_189075.2 UniGene:At.43463 HSSP:Q56215
ProteinModelPortal:Q84LK0 SMR:Q84LK0 STRING:Q84LK0 PaxDb:Q84LK0
PRIDE:Q84LK0 EnsemblPlants:AT3G24320.1 GeneID:822021
KEGG:ath:AT3G24320 GeneFarm:4139 TAIR:At3g24320
HOGENOM:HOG000264796 InParanoid:Q84LK0 OMA:RGTETAK PhylomeDB:Q84LK0
ProtClustDB:CLSN2680862 Genevestigator:Q84LK0 GO:GO:0032301
GO:GO:0032138 Gene3D:3.40.1170.10 SUPFAM:SSF55271 Uniprot:Q84LK0
Length = 1118
Score = 238 (88.8 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 71/245 (28%), Positives = 121/245 (49%)
Query: 781 VPNDTNLH--AEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGI 838
V + T +H + + ++TGPN GGKS +R + ++ G VPA SA + D I
Sbjct: 748 VSSGTAVHNTVDMQSLFLLTGPNGGGKSSLLRSICAAALLGISGLMVPAESACIPHFDSI 807
Query: 839 YTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLD 898
M + DS G+S+F E++E I+ T++SLV++DE+ RGT T G IA + ++
Sbjct: 808 MLHMKSYDSPVDGKSSFQVEMSEIRSIVSQATSRSLVLIDEICRGTETAKGTCIAGSVVE 867
Query: 899 YLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYK 958
L + C+ + TH I F+ + +++Y K MG + + T+ K
Sbjct: 868 SL-DTSGCLGIVSTHLHGI------FSLPLTAKNITY----KAMGAENVEGQTKPTW--K 914
Query: 959 VVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLVKLSDQE 1018
+ GV S F+ A+ +P S I RA + + A+ +S K D ++ S+ +
Sbjct: 915 LTDGVCRESLAFETAKREGVPESVIQRAEALYLSVYAKDASA---EVVKPDQIITSSNND 971
Query: 1019 QEAQE 1023
Q+ Q+
Sbjct: 972 QQIQK 976
Score = 62 (26.9 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 18/83 (21%), Positives = 39/83 (46%)
Query: 92 LEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGI--YAHL-DHNFMTASIPTF 148
L ++++ K+++P +L+ VG + G DA + + G+ + L + A P
Sbjct: 124 LNWEMLQFKSRFPREVLLCRVGEFYEAIGIDACILVEYAGLNPFGGLRSDSIPKAGCPIM 183
Query: 149 RLNVHVRRLVNAGFKVGVVKQTE 171
L + L G+ V +V++ +
Sbjct: 184 NLRQTLDDLTRNGYSVCIVEEVQ 206
Score = 44 (20.5 bits), Expect = 1.9e-16, Sum P(3) = 1.9e-16
Identities = 22/116 (18%), Positives = 48/116 (41%)
Query: 295 KMLLAYAGPASNVRVECAS--RDCFIGGGALAEVMSLYENMGEDTLS--NNEDQNMDVPE 350
K+L+ A+ ++++ + +C + E++SL EN +S +N
Sbjct: 483 KLLMDPTWVATGLKIDFDTFVNECHWASDTIGEMISLDENESHQNVSKCDNVPNEFFYDM 542
Query: 351 QGNHRSAIEGI-----MNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSM 401
+ + R ++GI + + + +AL+L + + RI AS G +
Sbjct: 543 ESSWRGRVKGIHIEEEITQVEKSAEALSLAVAEDFHPIISRIKATTASLGGPKGEI 598
Score = 42 (19.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 14/49 (28%), Positives = 21/49 (42%)
Query: 555 YREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLL 603
YR + K LL R S GK+ K ++T +K+ D+L
Sbjct: 24 YRTYSSLKPSSPILLNRRYSEGISCLRDGKSLKRITTASKKVKTSSDVL 72
>UNIPROTKB|Q3ABU1 [details] [associations]
symbol:mutS2 "MutS2 protein" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0003824 "catalytic
activity" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR003593
InterPro:IPR005747 InterPro:IPR007696 Pfam:PF00488
PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382 SMART:SM00533
SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625 GO:GO:0005524
GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684
GO:GO:0006281 GO:GO:0006298 GO:GO:0017111 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456
OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 236 (88.1 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 59/152 (38%), Positives = 82/152 (53%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHP+L VP D L E + IITGPN GGK+ ++ + ++ IMA+ G F+PA
Sbjct: 302 RHPLLGK----KAVPFDLTLGKEFDLL-IITGPNTGGKTVTLKTIGILTIMARAGLFIPA 356
Query: 828 S-SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTST 886
S E+ + +Y +G SI Q STF L +IL N LV++DELG GT
Sbjct: 357 SPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDP 416
Query: 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918
+G A+A A L+ L KK V+ TH ++A
Sbjct: 417 REGAALAKAILEEL-RGKKVKVVATTHTSELA 447
>TIGR_CMR|CHY_1564 [details] [associations]
symbol:CHY_1564 "DNA mismatch repair protein MutS"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003824 "catalytic activity" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] HAMAP:MF_00092 InterPro:IPR000432
InterPro:IPR003593 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 PIRSF:PIRSF005814 PROSITE:PS00486 SMART:SM00382
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003824 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0003684 GO:GO:0006281 GO:GO:0006298 GO:GO:0017111
GO:GO:0030983 SMART:SM00463 PROSITE:PS50828 GO:GO:0045005
SUPFAM:SSF48334 HSSP:P23909 eggNOG:COG1193 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:YP_360393.1 ProteinModelPortal:Q3ABU1 STRING:Q3ABU1
GeneID:3727187 KEGG:chy:CHY_1564 PATRIC:21276253
BioCyc:CHYD246194:GJCN-1563-MONOMER Uniprot:Q3ABU1
Length = 777
Score = 236 (88.1 bits), Expect = 6.7e-16, P = 6.7e-16
Identities = 59/152 (38%), Positives = 82/152 (53%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPA 827
RHP+L VP D L E + IITGPN GGK+ ++ + ++ IMA+ G F+PA
Sbjct: 302 RHPLLGK----KAVPFDLTLGKEFDLL-IITGPNTGGKTVTLKTIGILTIMARAGLFIPA 356
Query: 828 S-SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTST 886
S E+ + +Y +G SI Q STF L +IL N LV++DELG GT
Sbjct: 357 SPETEIGLFGEVYVDIGDEQSIVQSLSTFSSHLLNLKFILENAREGDLVLLDELGTGTDP 416
Query: 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918
+G A+A A L+ L KK V+ TH ++A
Sbjct: 417 REGAALAKAILEEL-RGKKVKVVATTHTSELA 447
>UNIPROTKB|Q0DJI9 [details] [associations]
symbol:Os05g0274200 "Os05g0274200 protein" species:39947
"Oryza sativa Japonica Group" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000400 "four-way junction DNA binding"
evidence=IBA] [GO:0000403 "Y-form DNA binding" evidence=IBA]
[GO:0000404 "loop DNA binding" evidence=IBA] [GO:0000406
"double-strand/single-strand DNA junction binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006301 "postreplication
repair" evidence=IBA] [GO:0006311 "meiotic gene conversion"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0032137 "guanine/thymine mispair binding"
evidence=IBA] [GO:0032138 "single base insertion or deletion
binding" evidence=IBA] [GO:0032301 "MutSalpha complex"
evidence=IBA] [GO:0032302 "MutSbeta complex" evidence=IBA]
[GO:0043570 "maintenance of DNA repeat elements" evidence=IBA]
[GO:0045128 "negative regulation of reciprocal meiotic
recombination" evidence=IBA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005886 GO:GO:0005524
GO:GO:0003684 EMBL:AP008211 GO:GO:0045128 GO:GO:0000228
GO:GO:0043570 GO:GO:0000403 GO:GO:0006301 GO:GO:0008094
GO:GO:0006311 GO:GO:0000400 GO:GO:0032137 GO:GO:0000710
GO:GO:0032301 GO:GO:0032138 KO:K08735 ProtClustDB:CLSN2680872
GO:GO:0032302 GO:GO:0000406 GO:GO:0000404 RefSeq:NP_001055070.2
UniGene:Os.18121 STRING:Q0DJI9 EnsemblPlants:LOC_Os05g19270.1
GeneID:4338271 KEGG:osa:4338271 Gramene:Q0DJI9 Uniprot:Q0DJI9
Length = 113
Score = 208 (78.3 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 43/87 (49%), Positives = 61/87 (70%)
Query: 811 QVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT 870
QV + +MAQVGSFVP A + V D I+ R+GA D +G STF++E+ E + IL+ +
Sbjct: 15 QVGVNVLMAQVGSFVPCDRASISVRDCIFARVGAGDCQLRGVSTFMQEMLETASILKGAS 74
Query: 871 AQSLVIVDELGRGTSTHDGVAIAYATL 897
+SL+I+DELGRGTST+DG ++A L
Sbjct: 75 DKSLIIIDELGRGTSTYDGFGWSHAPL 101
>UNIPROTKB|A3KGN1 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 GO:GO:0006298
GO:GO:0030983 EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN1
Ensembl:ENST00000430241 HOGENOM:HOG000172377 Uniprot:A3KGN1
Length = 135
Score = 118 (46.6 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 762 IHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVA 813
+ I +GRHP+++ + FVPN T ++ ++ITGPN GKS Y++QVA
Sbjct: 14 VRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVA 64
Score = 117 (46.2 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 29/83 (34%), Positives = 50/83 (60%)
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVL 909
G+S +L+++ +A + N TAQSLV++DE G+GT+T DG+A+ A L +L C +
Sbjct: 55 GKSIYLKQVAKA---VNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 111
Query: 910 FV-THYPKIADIKTKFTGSVGTY 931
FV T++ + ++ G + Y
Sbjct: 112 FVATNFLSLVQLQLLPQGPLVQY 134
>UNIPROTKB|H0YDS7 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 SMART:SM00534 GO:GO:0005524 EMBL:AL662899
EMBL:CR759787 GO:GO:0006298 GO:GO:0030983 EMBL:AL662834
EMBL:CR936239 EMBL:CR759915 EMBL:CR925765 HGNC:HGNC:7328
ChiTaRS:MSH5 Ensembl:ENST00000469938 Ensembl:ENST00000471854
Ensembl:ENST00000484309 Ensembl:ENST00000486024
Ensembl:ENST00000497253 Uniprot:H0YDS7
Length = 166
Score = 119 (46.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 33/95 (34%), Positives = 55/95 (57%)
Query: 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVL 909
G+S +L+++ +A + N TAQSLV++DE G+GT+T DG+A+ A L +L C +
Sbjct: 55 GKSIYLKQVAKA---VNNATAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHI 111
Query: 910 FV-THYPKIADIKTKFTGSVGTYHVSYLTSHKVMG 943
FV T++ + ++ G + V YL +V G
Sbjct: 112 FVATNFLSLVQLQLLPQGPL----VQYLDWPRVSG 142
Score = 118 (46.6 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 762 IHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVA 813
+ I +GRHP+++ + FVPN T ++ ++ITGPN GKS Y++QVA
Sbjct: 14 VRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNSSGKSIYLKQVA 64
>TIGR_CMR|BA_4794 [details] [associations]
symbol:BA_4794 "MutS2 family protein" species:198094
"Bacillus anthracis str. Ames" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 Pfam:PF01713
INTERPRO:IPR002625 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003684 GO:GO:0006298 GO:GO:0030983
SMART:SM00463 PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334
HSSP:Q56215 RefSeq:NP_846997.1 RefSeq:YP_021440.1
RefSeq:YP_030694.1 ProteinModelPortal:Q81L40 IntAct:Q81L40
EnsemblBacteria:EBBACT00000011403 EnsemblBacteria:EBBACT00000013814
EnsemblBacteria:EBBACT00000023448 GeneID:1083920 GeneID:2815890
GeneID:2851606 KEGG:ban:BA_4794 KEGG:bar:GBAA_4794 KEGG:bat:BAS4447
eggNOG:COG1193 HOGENOM:HOG000135096 KO:K07456 OMA:HDQSSTG
ProtClustDB:PRK00409 BioCyc:BANT260799:GJAJ-4504-MONOMER
BioCyc:BANT261594:GJ7F-4656-MONOMER PANTHER:PTHR11361:SF14
TIGRFAMs:TIGR01069 Uniprot:Q81L40
Length = 786
Score = 225 (84.3 bits), Expect = 4.4e-14, Sum P(3) = 4.4e-14
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 768 RHPVLDTILLDNFVPNDTNLHAEREYCQI-ITGPNMGGKSCYIRQVALIGIMAQVGSFVP 826
RHP++D ++ VPN N+ +++ I ITGPN GGK+ ++ V + +MAQ G +P
Sbjct: 308 RHPLIDPEVI---VPN--NIMLGKDFTTIVITGPNTGGKTVTLKTVGICVLMAQSGLHIP 362
Query: 827 A-SSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTS 885
+E+ V I+ +G SI+Q STF + IL +SLV+ DELG GT
Sbjct: 363 VMDESEICVFKNIFADIGDEQSIEQSLSTFSSHMVNIVDILEKADFESLVLFDELGAGTD 422
Query: 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917
+G A+A + LD + ++ V+ THYP++
Sbjct: 423 PQEGAALAISILDEVC-NRGARVVATTHYPEL 453
Score = 48 (22.0 bits), Expect = 4.4e-14, Sum P(3) = 4.4e-14
Identities = 10/36 (27%), Positives = 24/36 (66%)
Query: 416 LRNNSNGSEYGTLL---HIMNHTLTIYGSRLLRRWV 448
+R+N ++ G++L +++ T+YGSR ++R++
Sbjct: 71 IRSNVKRAKIGSMLSPNELLDIANTMYGSRNMKRFI 106
Score = 42 (19.8 bits), Expect = 4.4e-14, Sum P(3) = 4.4e-14
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 914 YPKIADIKTKFTGSVGTYHVSYLTSHK 940
YP+++ I K TG++ YL H+
Sbjct: 737 YPRVSIIHGKGTGALRQGVQDYLKKHR 763
>UNIPROTKB|A8JDD7 [details] [associations]
symbol:CHLREDRAFT_121781 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000795 "synaptonemal complex"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0045143 "homologous chromosome segregation" evidence=IBA]
[GO:0051026 "chiasma assembly" evidence=IBA] [GO:0000710 "meiotic
mismatch repair" evidence=IRD] [GO:0003684 "damaged DNA binding"
evidence=IRD] [GO:0032300 "mismatch repair complex" evidence=IRD]
InterPro:IPR000432 Pfam:PF00488 PROSITE:PS00486 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
eggNOG:COG0249 EMBL:DS496161 RefSeq:XP_001700459.1 STRING:A8JDD7
EnsemblPlants:EDO98148 GeneID:5726009 KEGG:cre:CHLREDRAFT_121781
Uniprot:A8JDD7
Length = 96
Score = 186 (70.5 bits), Expect = 3.2e-13, P = 3.2e-13
Identities = 39/96 (40%), Positives = 59/96 (61%)
Query: 804 GKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEAS 863
GKSCY R VALI +A +GS+VPA +A + + D I R A+ + TF+ +L + S
Sbjct: 2 GKSCYARAVALIAYLAHLGSYVPAQAATIGLADRIAARC-ATPPLGAATVTFMADLTQVS 60
Query: 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899
+LR T ++L+++DE G+GT DGV + A L +
Sbjct: 61 AMLRTATERTLLVLDEFGKGTLASDGVGLCAALLTH 96
>UNIPROTKB|A8J0I3 [details] [associations]
symbol:CHLREDRAFT_174349 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000228 "nuclear chromosome"
evidence=IBA] [GO:0000404 "loop DNA binding" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IBA] [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0032300 "mismatch repair complex"
evidence=IBA] [GO:0043570 "maintenance of DNA repeat elements"
evidence=IBA] InterPro:IPR000432 InterPro:IPR016151 Pfam:PF00488
PROSITE:PS00486 GO:GO:0005524 GO:GO:0003684 GO:GO:0007131
GO:GO:0000228 GO:GO:0043570 GO:GO:0008094 EMBL:DS496130
eggNOG:COG0249 GO:GO:0000710 Gene3D:3.40.1170.10 GO:GO:0032300
GO:GO:0000404 RefSeq:XP_001694807.1 ProteinModelPortal:A8J0I3
STRING:A8J0I3 EnsemblPlants:EDP02391 GeneID:5720367
KEGG:cre:CHLREDRAFT_174349 Uniprot:A8J0I3
Length = 317
Score = 145 (56.1 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 34/83 (40%), Positives = 52/83 (62%)
Query: 823 SFVPASSAELHVLDGIYTRMGASDSIQQG----RSTFLEELNEASYILRNCTAQSLVIVD 878
S+V + H+++ +GA D + + R+TF EE+++A+ +L +SLV+ D
Sbjct: 204 SYVAVQNQGDHLIE---VPVGAEDRVPRAWHKVRATFFEEMSDAAGLLSAADRRSLVLCD 260
Query: 879 ELGRGTSTHDGVAIAYATLDYLL 901
ELGRGT+THDGVA+A A L LL
Sbjct: 261 ELGRGTATHDGVAVAGAVLSQLL 283
Score = 106 (42.4 bits), Expect = 3.6e-13, Sum P(2) = 3.6e-13
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 139 NFMTASIPTFRLNVHVRRLVNAGFKVGVVKQT----ETAAIKAHGPGKAGPFGRGL 190
NF+TAS P RL V+VRRL AGF+VGVV+Q + AA++ G P R L
Sbjct: 79 NFLTASFPVPRLPVYVRRLCRAGFRVGVVRQDVRGQDAAALRDLERGVGSPLLRQL 134
Score = 97 (39.2 bits), Expect = 7.4e-08, Sum P(2) = 7.4e-08
Identities = 38/136 (27%), Positives = 67/136 (49%)
Query: 566 SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQS 625
S LL++L+ S + A L+ ++ EAA D + F+ V A +AV++
Sbjct: 128 SPLLRQLLRQVGSRGLAAALAGCLAPLDPEAAAANDFSRM-------FAGVWAAARAVRA 180
Query: 626 AKEELDSLINMCRKQLGMR--NLEFMSVSGI-THLIELP--ANFKVPLNWAKVNSTKKTI 680
A+ L SL+ + G++ + +++V HLIE+P A +VP W KV +T
Sbjct: 181 AETHLASLLPGLARAAGLQPGGVSYVAVQNQGDHLIEVPVGAEDRVPRAWHKVRATFFEE 240
Query: 681 RYHSPEVLTALDQLAL 696
+ +L+A D+ +L
Sbjct: 241 MSDAAGLLSAADRRSL 256
>TIGR_CMR|GSU_0547 [details] [associations]
symbol:GSU_0547 "MutS2 family protein" species:243231
"Geobacter sulfurreducens PCA" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0006259 "DNA metabolic process" evidence=ISS]
HAMAP:MF_00092 InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
SMART:SM00533 SMART:SM00534 Pfam:PF01713 INTERPRO:IPR002625
GO:GO:0005524 GO:GO:0003684 GO:GO:0006298 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0030983 SMART:SM00463
PROSITE:PS50828 GO:GO:0045005 SUPFAM:SSF48334 HOGENOM:HOG000135096
KO:K07456 OMA:HDQSSTG PANTHER:PTHR11361:SF14 TIGRFAMs:TIGR01069
RefSeq:NP_951605.1 ProteinModelPortal:Q74FQ9 GeneID:2685958
KEGG:gsu:GSU0547 PATRIC:22023851 ProtClustDB:CLSK827917
BioCyc:GSUL243231:GH27-531-MONOMER Uniprot:Q74FQ9
Length = 792
Score = 223 (83.6 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 84/308 (27%), Positives = 141/308 (45%)
Query: 762 IHICSGRHPVLDTILLDN----FVPNDTNLH-AER------EYCQIITGPNMGGKSCYIR 810
I + GRHP+L + + VP D L AER +ITGPN GGK+ ++
Sbjct: 300 IRVREGRHPLLALMARERGVGRVVPLDLGLGGAERPDSHVANQVMVITGPNAGGKTISLK 359
Query: 811 QVALIGIMAQVGSFVPASS-AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869
L+ +MA G VPA+S + ++ + +G SI+Q STF ++ + IL
Sbjct: 360 TTGLLHLMALAGIPVPAASTSSFPLISDLLVDIGDEQSIEQSLSTFSAHVSNIAGILERA 419
Query: 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVG 929
+++V++DELG GT G AI+ A L L + K +V+ TH + DI VG
Sbjct: 420 DRRTVVLLDELGTGTEPVQGAAISCAVLADL-QDKGALVIATTH---LTDI-------VG 468
Query: 930 TYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVI 989
H V M+ Q +T LY++ G S ++A+ LP ++ AT +
Sbjct: 469 FVHKR---DGMVNASMEFDR-QTLTPLYRLTVGEPGQSHALEIARRYGLPDRVVAVATGM 524
Query: 990 AAKLEAE----VSSRVQNRSAKRDLLVKLSDQEQEAQENMPVSPESFYLG---RVEASED 1042
+++E E ++ R + L + ++A+E ++ E R EA+E
Sbjct: 525 LSRMETEFHELLAELKDQRRRHEEALAEAERLRRDAEEKARIARERLAEAETRRREATEK 584
Query: 1043 LISAYRDL 1050
+ +++
Sbjct: 585 ALQEAKEI 592
Score = 38 (18.4 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 91 PLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVL 130
PL +++ T +PD+L +EV GE + A+ +L
Sbjct: 115 PLLRELAGTLTGFPDLLDELEVSIDSE--GEILDSASPLL 152
Score = 37 (18.1 bits), Expect = 4.9e-13, Sum P(2) = 4.9e-13
Identities = 17/65 (26%), Positives = 27/65 (41%)
Query: 451 PLCDRNLISARLDAVSEIAE--SMG---SYRTSESVGQH-DEKNSDVTIVEPQFYYILSS 504
PL DR I R V EI +G S R+ E + D +++P +L
Sbjct: 37 PLDDREAIVRRFGQVDEIRRLRQLGIDLSLRSFEDIAPLLAAVRPDGAVLDPTELVVLFP 96
Query: 505 VLTSL 509
+L ++
Sbjct: 97 ILRTM 101
>UNIPROTKB|A7UVX1 [details] [associations]
symbol:NCU10895 "Putative uncharacterized protein"
species:367110 "Neurospora crassa OR74A" [GO:0000795 "synaptonemal
complex" evidence=IBA] [GO:0007131 "reciprocal meiotic
recombination" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
Pfam:PF00488 SMART:SM00533 SMART:SM00534 GO:GO:0005524
GO:GO:0006298 GO:GO:0030983 GO:GO:0007131 EMBL:AABX02000002
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 OrthoDB:EOG4VHPFT RefSeq:XP_001728471.1
ProteinModelPortal:A7UVX1 EnsemblFungi:EFNCRT00000000709
GeneID:5847835 KEGG:ncr:NCU10895 Uniprot:A7UVX1
Length = 625
Score = 202 (76.2 bits), Expect = 2.2e-12, P = 2.2e-12
Identities = 45/116 (38%), Positives = 67/116 (57%)
Query: 746 KNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGK 805
+++VRP+ D + I RHP+++ D +V ND + Q+ITG NM GK
Sbjct: 320 QDYVRPMITDS-----MVIKQARHPIVEA-RTDQYVANDVYSGDQSGRFQVITGGNMSGK 373
Query: 806 SCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE 861
S +IR VALI IMAQ+GSFVPA A + + D ++ R+ D+ + TF + LN+
Sbjct: 374 STFIRSVALIQIMAQMGSFVPAQFASISICDRVFARVSTDDAPENNLGTFAQLLNK 429
>UNIPROTKB|Q81YJ6 [details] [associations]
symbol:BAS3289 "Putative MutS family protein" species:1392
"Bacillus anthracis" [GO:0003674 "molecular_function" evidence=ND]
InterPro:IPR000432 InterPro:IPR005747 InterPro:IPR007696
Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814 PROSITE:PS00486
SMART:SM00533 SMART:SM00534 GO:GO:0005524 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 197 (74.4 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 98/428 (22%), Positives = 179/428 (41%)
Query: 608 ISNGQFSEVARARKAVQSA----KEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPAN 663
I + E+ R R + S KE L +N + ++ F+S + I + ++
Sbjct: 142 IDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKKYIQEF-FISKKDDRYTIPIKSS 200
Query: 664 FKVPLNWAKVN-STKKTIRYHSPEVLTALD-QLAL-----ANEELTIVCRAAWDSFLKEF 716
+K + + V S K + + P +T L+ +LA A EE I+ A + E
Sbjct: 201 YKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQIL--ATLSGMVVE- 257
Query: 717 GGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL 776
Y+ + S++ + + P ++DH IH+ + +HP+L
Sbjct: 258 NIYHIKINMELISQYDMVFAKAKF--SKSIDGIEPK-LNDHG--HIHLVNCKHPLLS--- 309
Query: 777 LDNFVPNDTNLHAEREYCQ-IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS-AELHV 834
VP N + Y IITGPN GGK+ ++ + L+ + G + E+ +
Sbjct: 310 -GKVVP--LNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAI 366
Query: 835 LDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAY 894
+ ++ +G + SI+ STF + S I+R +L++ DE+G GT ++G A+A
Sbjct: 367 FENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAI 426
Query: 895 ATLD--YLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD 952
+ L+ YL C+ + THY +IK +F+ H ++ + M S+
Sbjct: 427 SILEEFYLAG---CITVASTHY---GEIK-RFS----EMHDDFMNA-----AMQFNSET- 469
Query: 953 VTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLV 1012
+ LYK+V G S S +A + + RA E + +++ K L
Sbjct: 470 LEPLYKLVIGKSGESNALWIANKMNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQ 529
Query: 1013 KLSDQEQE 1020
+ + E
Sbjct: 530 EKRENHYE 537
>TIGR_CMR|BA_3547 [details] [associations]
symbol:BA_3547 "MutS family protein, putative"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0006259 "DNA metabolic
process" evidence=ISS] InterPro:IPR000432 InterPro:IPR005747
InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192 PIRSF:PIRSF005814
PROSITE:PS00486 SMART:SM00533 SMART:SM00534 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 GO:GO:0045005 SUPFAM:SSF48334
PANTHER:PTHR11361:SF14 RefSeq:NP_845823.1 RefSeq:YP_020182.1
RefSeq:YP_029546.1 ProteinModelPortal:Q81YJ6 DNASU:1084555
EnsemblBacteria:EBBACT00000012461 EnsemblBacteria:EBBACT00000013528
EnsemblBacteria:EBBACT00000020130 GeneID:1084555 GeneID:2814989
GeneID:2849196 KEGG:ban:BA_3547 KEGG:bar:GBAA_3547 KEGG:bat:BAS3289
HOGENOM:HOG000094825 OMA:KMNVREH ProtClustDB:CLSK865470
BioCyc:BANT260799:GJAJ-3351-MONOMER
BioCyc:BANT261594:GJ7F-3461-MONOMER Uniprot:Q81YJ6
Length = 633
Score = 197 (74.4 bits), Expect = 7.8e-12, P = 7.8e-12
Identities = 98/428 (22%), Positives = 179/428 (41%)
Query: 608 ISNGQFSEVARARKAVQSA----KEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPAN 663
I + E+ R R + S KE L +N + ++ F+S + I + ++
Sbjct: 142 IDSAASKELKRIRNNIDSVDGKIKERLTKFLNSSANKKYIQEF-FISKKDDRYTIPIKSS 200
Query: 664 FKVPLNWAKVN-STKKTIRYHSPEVLTALD-QLAL-----ANEELTIVCRAAWDSFLKEF 716
+K + + V S K + + P +T L+ +LA A EE I+ A + E
Sbjct: 201 YKNQVAGSIVEASAKGSTVFIEPHTVTKLNAELASLKAEEAMEEYQIL--ATLSGMVVE- 257
Query: 717 GGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL 776
Y+ + S++ + + P ++DH IH+ + +HP+L
Sbjct: 258 NIYHIKINMELISQYDMVFAKAKF--SKSIDGIEPK-LNDHG--HIHLVNCKHPLLS--- 309
Query: 777 LDNFVPNDTNLHAEREYCQ-IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS-AELHV 834
VP N + Y IITGPN GGK+ ++ + L+ + G + E+ +
Sbjct: 310 -GKVVP--LNFEIGQNYRSLIITGPNAGGKTIVLKTIGLLTLATMSGLHIAGDKETEIAI 366
Query: 835 LDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAY 894
+ ++ +G + SI+ STF + S I+R +L++ DE+G GT ++G A+A
Sbjct: 367 FENVFVDIGDNQSIENALSTFSSHMKNLSEIMRMSNNNTLLLFDEIGSGTEPNEGAALAI 426
Query: 895 ATLD--YLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQD 952
+ L+ YL C+ + THY +IK +F+ H ++ + M S+
Sbjct: 427 SILEEFYLAG---CITVASTHY---GEIK-RFS----EMHDDFMNA-----AMQFNSET- 469
Query: 953 VTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQNRSAKRDLLV 1012
+ LYK+V G S S +A + + RA E + +++ K L
Sbjct: 470 LEPLYKLVIGKSGESNALWIANKMNVRERVLKRAKAYMGNKEYTLEKVNESKIRKPKFLQ 529
Query: 1013 KLSDQEQE 1020
+ + E
Sbjct: 530 EKRENHYE 537
>UNIPROTKB|A9WD22 [details] [associations]
symbol:Caur_0340 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633980.1 GeneID:5827953
KEGG:cau:Caur_0340 PATRIC:21411212 HOGENOM:HOG000020547 OMA:QGGKSTF
ProtClustDB:CLSK865139 BioCyc:CAUR324602:GIXU-343-MONOMER
Uniprot:A9WD22
Length = 505
Score = 185 (70.2 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 52/161 (32%), Positives = 81/161 (50%)
Query: 758 EPVQIH----ICSGRHPVLDTILL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQV 812
+PV H C+ + V + L + V ND + A+ + I+TGPN GGK+ ++R V
Sbjct: 289 QPVPAHERRLSCAELYDVTLALTLGSSVVGND--ISADGKSLIIVTGPNRGGKTVFLRSV 346
Query: 813 ALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQ 872
+ +M Q G FVPA S ++ G++T + R F EEL S I+ T
Sbjct: 347 GVAQLMMQCGMFVPAESFLANLTTGLFTHFKREEDKTMERGKFEEELARMSVIVDYLTPN 406
Query: 873 SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913
+L++++E T+ +G IA + L+E K V FVTH
Sbjct: 407 ALLLLNESFSATNEREGSEIARQIVSTLIE-KGIKVYFVTH 446
Score = 39 (18.8 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 616 VARARKAVQSAKEELDSLINMCRKQL 641
+ARA AV A E ++S + + +L
Sbjct: 240 LARAANAVGQAAEHIESFFRVLQWEL 265
>WB|WBGene00003420 [details] [associations]
symbol:msh-4 species:6239 "Caenorhabditis elegans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006298 "mismatch
repair" evidence=IEA] [GO:0030983 "mismatched DNA binding"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 146 (56.5 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 842 MGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901
MG +D + + +S F E+++A+ I++ SLV++DEL R TST +G+AI YA + +L
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 902 EHKKCMVLFVTHYPKIADIKTKFTGSVGTYH 932
+ L TH+ IA + ++ ++ YH
Sbjct: 61 KLHSYTFL-ATHFLDIAAL-ANYSNAIDNYH 89
>UNIPROTKB|Q22103 [details] [associations]
symbol:msh-4 "Protein MSH-4" species:6239 "Caenorhabditis
elegans" [GO:0051026 "chiasma assembly" evidence=IBA] [GO:0045143
"homologous chromosome segregation" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IRD] [GO:0030983 "mismatched DNA
binding" evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0007131 "reciprocal meiotic recombination"
evidence=IBA] [GO:0003684 "damaged DNA binding" evidence=IRD]
[GO:0000795 "synaptonemal complex" evidence=IBA] [GO:0000710
"meiotic mismatch repair" evidence=IRD] InterPro:IPR000432
Pfam:PF00488 PROSITE:PS00486 SMART:SM00534 GO:GO:0005524
GO:GO:0009792 GO:GO:0051729 GO:GO:0006298 GO:GO:0030983
GO:GO:0007131 GO:GO:0008094 GO:GO:0051026 GO:GO:0045143
GO:GO:0000795 eggNOG:COG0249 GeneTree:ENSGT00550000074897
EMBL:FO081112 HSSP:Q56215 PIR:T16784 RefSeq:NP_495458.1
UniGene:Cel.32838 ProteinModelPortal:Q22103 SMR:Q22103
STRING:Q22103 EnsemblMetazoa:T02G5.6 GeneID:191708
KEGG:cel:CELE_T02G5.6 UCSC:T02G5.6 CTD:191708 WormBase:T02G5.6
InParanoid:Q22103 OMA:ESAHILR NextBio:950048 Uniprot:Q22103
Length = 107
Score = 146 (56.5 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 31/91 (34%), Positives = 54/91 (59%)
Query: 842 MGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901
MG +D + + +S F E+++A+ I++ SLV++DEL R TST +G+AI YA + +L
Sbjct: 1 MGHNDELIRNKSAFASEMSDAAAIVQYADKNSLVVLDELARSTSTEEGIAITYAICEKVL 60
Query: 902 EHKKCMVLFVTHYPKIADIKTKFTGSVGTYH 932
+ L TH+ IA + ++ ++ YH
Sbjct: 61 KLHSYTFL-ATHFLDIAAL-ANYSNAIDNYH 89
>UNIPROTKB|Q8EYH8 [details] [associations]
symbol:LA_4236 "DNA mismatch repair protein ATPase
component" species:189518 "Leptospira interrogans serovar Lai str.
56601" [GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
GO:GO:0032300 EMBL:AE010300 GenomeReviews:AE010300_GR
RefSeq:NP_714416.1 ProteinModelPortal:Q8EYH8 GeneID:1153578
KEGG:lil:LA_4236 PATRIC:22389315 HOGENOM:HOG000117340 OMA:RERSLAC
ProtClustDB:CLSK575192 BioCyc:LINT189518:GJBB-3356-MONOMER
Uniprot:Q8EYH8
Length = 610
Score = 174 (66.3 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 49/157 (31%), Positives = 86/157 (54%)
Query: 769 HPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS 828
HP++ + D+ V N + E + +ITG NM GK+ Y+R + + I++ G VPAS
Sbjct: 415 HPLIPS---DSRVSNPLDF-IEEQNVVLITGSNMSGKTTYLRTIGVASILSMAGGPVPAS 470
Query: 829 SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI---LRNCTAQSLVIVDELGRGTS 885
L VL I+T M D++++G S F E+ S I +R+ + LV++DE+ +GT+
Sbjct: 471 KFSLPVLK-IHTSMRNEDNLEEGISFFYAEVRRLSEIVKKIRDKNSSHLVLLDEILKGTN 529
Query: 886 THDGVAIAYATLDYLLEHKKCMVLFVT-HYPKIADIK 921
T + L L +++ ++FVT H ++A ++
Sbjct: 530 TRERSLACKGILKELKKNRT--IVFVTSHDLELAKVE 564
Score = 44 (20.5 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 28/87 (32%), Positives = 40/87 (45%)
Query: 496 PQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEY 555
P L+ +L L RS + IF R + S I+ +Q IL K L+ +G +
Sbjct: 253 PASVLFLNLILFGLYRSRSLD-----IFRRYYSISGSISGLQKILIYLKGLKIRDKNGRF 307
Query: 556 REKVTSKT-LHSA------LLKRLILT 575
+ TSK L SA +LKR+ LT
Sbjct: 308 LLEDTSKDELRSAYKDLDLILKRVSLT 334
>UNIPROTKB|Q7NE77 [details] [associations]
symbol:gll4003 "Gll4003 protein" species:251221
"Gloeobacter violaceus PCC 7421" [GO:0003684 "damaged DNA binding"
evidence=IBA] [GO:0006298 "mismatch repair" evidence=IBA]
[GO:0008094 "DNA-dependent ATPase activity" evidence=IBA]
[GO:0030983 "mismatched DNA binding" evidence=IBA] [GO:0032300
"mismatch repair complex" evidence=IBA] InterPro:IPR000432
InterPro:IPR007696 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 GO:GO:0008094
EMBL:BA000045 GenomeReviews:BA000045_GR SUPFAM:SSF48334 HSSP:Q56215
GO:GO:0032300 RefSeq:NP_926949.1 ProteinModelPortal:Q7NE77
GeneID:2602406 KEGG:gvi:gll4003 PATRIC:22047503
HOGENOM:HOG000022931 OMA:ESYFFAE ProtClustDB:CLSK923279
BioCyc:GVIO251221:GH9A-4052-MONOMER Uniprot:Q7NE77
Length = 619
Score = 150 (57.9 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 59/232 (25%), Positives = 106/232 (45%)
Query: 752 VFVDDHEPVQIHICSGR--HPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYI 809
VF + +Q+ I +G+ HP++ + V ND L + ++TG NM GKS +
Sbjct: 389 VFAEVDTRLQV-IAAGQLGHPLIGEAVR---VANDVTLGPPGTFL-LVTGSNMSGKSTLL 443
Query: 810 RQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL--- 866
R + L ++A G+ V A S L + + T M DS+ G S ++ EL ++
Sbjct: 444 RSIGLNIVLALAGAPVCARSLRLPPVT-LKTSMRVQDSLASGLSFYMAELQRLKEVVDAA 502
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
R L ++DE+ GT++ + L +LL + + TH +AD+ +
Sbjct: 503 RPAERPLLYLLDEILLGTNSAERQVAVRRVLSFLLG-RGALGAISTHDLALADLP-ELAA 560
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978
+ T H + GP+ +T+ Y++ PGV+ ++ K+ +L L
Sbjct: 561 AARTVHFREHFAAGAAGPV-------MTFDYRMRPGVAPTTNALKLLELVGL 605
Score = 48 (22.0 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 437 TIYGSRLLRRWVTHPLCDRNLISARLDAVSEIA 469
T G RLL RW+ P I+ R A++++A
Sbjct: 148 TPMGRRLLARWLLEP-AGPAAIAGRQRAIADLA 179
>UNIPROTKB|Q8A4A6 [details] [associations]
symbol:BT_2697 "DNA mismatch repair protein mutS"
species:226186 "Bacteroides thetaiotaomicron VPI-5482" [GO:0003684
"damaged DNA binding" evidence=IBA] [GO:0006298 "mismatch repair"
evidence=IBA] [GO:0008094 "DNA-dependent ATPase activity"
evidence=IBA] [GO:0030983 "mismatched DNA binding" evidence=IBA]
[GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 InterPro:IPR007696 Pfam:PF00488 Pfam:PF05192
SMART:SM00533 SMART:SM00534 GO:GO:0005524 GO:GO:0003684
GO:GO:0006298 GO:GO:0030983 EMBL:AE015928 GenomeReviews:AE015928_GR
GO:GO:0008094 SUPFAM:SSF48334 HSSP:Q56215 GO:GO:0032300
HOGENOM:HOG000022931 OMA:ESYFFAE RefSeq:NP_811609.1
ProteinModelPortal:Q8A4A6 GeneID:1072523 KEGG:bth:BT_2697
PATRIC:21060335 ProtClustDB:CLSK823265
BioCyc:BTHE226186:GJXV-2751-MONOMER Uniprot:Q8A4A6
Length = 604
Score = 137 (53.3 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 42/166 (25%), Positives = 81/166 (48%)
Query: 769 HPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS 828
HP+++ + V N ++ +R + IITG NM GKS Y+R V + ++A +G+ P
Sbjct: 405 HPLMNR---NKCVRNGIDME-KRPFFIIITGANMAGKSTYLRTVGVNYLLACIGA--PVW 458
Query: 829 SAELHVLDG-IYTRMGASDSIQQGRSTFLEELNEASYILRNCTA--QSLVIVDELGRGTS 885
+A++ + + T + SDS+ S F EL I+ A + +I+DE+ +GT+
Sbjct: 459 AAKMEIFPARLVTSLRTSDSLTDNESYFFAELKRLKLIIDKLKAGEELFIILDEILKGTN 518
Query: 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTY 931
+ D ++A + + ++ TH + + F ++ Y
Sbjct: 519 SMDKQKGSFALIKQFMSMDANGII-ATHDLLLGTLIDAFPQNIRNY 563
Score = 56 (24.8 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESM 472
+L +N T T G + L W L ++ I R +A+ E++ +
Sbjct: 131 SLFQYINRTSTPIGKQRLANWFNAHLEEKEAIEQRQEAIRELSSEL 176
Score = 42 (19.8 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 421 NGSEYGTLLHIMNHTLTIYGSRLLRRWV 448
NG EY H+ L I+G L +++
Sbjct: 109 NGKEYIDPSHLYTFDLDIFGEHSLFQYI 136
>UNIPROTKB|H7C2J4 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007861 Pfam:PF00488 Pfam:PF05190 Pfam:PF05192
SMART:SM00533 GO:GO:0005524 EMBL:AL662899 GO:GO:0006298
GO:GO:0030983 SUPFAM:SSF48334 HGNC:HGNC:7328 ChiTaRS:MSH5
ProteinModelPortal:H7C2J4 Ensembl:ENST00000423982 Bgee:H7C2J4
Uniprot:H7C2J4
Length = 637
Score = 116 (45.9 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 23/72 (31%), Positives = 43/72 (59%)
Query: 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802
+R+ + RP + + + + I +GRHP+++ + FVPN T ++ ++ITGPN
Sbjct: 539 ARDYGYSRPRY--SPQVLGVRIQNGRHPLME-LCARTFVPNSTECGGDKGRVKVITGPNS 595
Query: 803 GGKSCYIRQVAL 814
GKS Y++Q+ +
Sbjct: 596 SGKSIYLKQLRI 607
Score = 76 (31.8 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 31/116 (26%), Positives = 55/116 (47%)
Query: 367 LAVQALALTIRHL--KQFGLE------RIMCLGASFRSLSGSMEMTLSANTLQQLEVLRN 418
L V+AL ++ L ++ G+E + LG F+ + + + +T L++ ++
Sbjct: 178 LTVRALGGLLKFLGRRRIGVELEDYNVSVPILG--FKKFMLTHLVNIDQDTYSVLQIFKS 235
Query: 419 NSNGSEY--------G-TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAV 465
S+ S Y G +L I+N +G +LLR W T P D +S+RLD +
Sbjct: 236 ESHPSVYKVASGLKEGLSLFGILNRCHCKWGEKLLRLWFTRPTHDLGELSSRLDVI 291
>UNIPROTKB|Q23YW9 [details] [associations]
symbol:TTHERM_00857890 "MutS domain II family protein"
species:312017 "Tetrahymena thermophila SB210" [GO:0000795
"synaptonemal complex" evidence=IBA] [GO:0007131 "reciprocal
meiotic recombination" evidence=IBA] [GO:0008094 "DNA-dependent
ATPase activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0045143 "homologous chromosome segregation"
evidence=IBA] [GO:0051026 "chiasma assembly" evidence=IBA]
[GO:0000710 "meiotic mismatch repair" evidence=IRD] [GO:0003684
"damaged DNA binding" evidence=IRD] [GO:0032300 "mismatch repair
complex" evidence=IRD] InterPro:IPR000432 InterPro:IPR007696
InterPro:IPR007860 Pfam:PF00488 Pfam:PF05192 SMART:SM00534
GO:GO:0005524 GO:GO:0006298 GO:GO:0030983 GO:GO:0007131
GO:GO:0008094 GO:GO:0051026 GO:GO:0045143 GO:GO:0000795
SUPFAM:SSF48334 SUPFAM:SSF53150 EMBL:GG662557 RefSeq:XP_001021931.1
ProteinModelPortal:Q23YW9 EnsemblProtists:EAS01686 GeneID:7832209
KEGG:tet:TTHERM_00857890 Uniprot:Q23YW9
Length = 1537
Score = 130 (50.8 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 26/74 (35%), Positives = 47/74 (63%)
Query: 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRST 854
Q+ G GKS I+ +A+I IMAQVG +VPA + + + + I ++ +DSI++ +S+
Sbjct: 1243 QLFLGQQNCGKSILIKSIAIIQIMAQVGCYVPAKNGVISLKNLILSKFYTTDSIEEKQSS 1302
Query: 855 FLEELNEASYILRN 868
F EL + +I+++
Sbjct: 1303 FTSELQQLDFIIKS 1316
Score = 69 (29.3 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + T LE+L + +E G+L+ + T+ G RLLR + PL D + R
Sbjct: 926 LVMDHKTALDLELLIQQLSQNEKGSLISLFK-IQTVAGKRLLRSNLLQPLNDLKSLQDRQ 984
Query: 463 DAVSEIAESMGS 474
AV E + S
Sbjct: 985 SAVFEFTMNQDS 996
Score = 41 (19.5 bits), Expect = 4.8e-05, Sum P(3) = 4.8e-05
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 322 ALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPD 366
++AE Y++ D + E++ EQ S ++ I+N D
Sbjct: 628 SIAEEQEEYDDDDNDKNDDGEEEQ----EQEEEESKVQDILNQRD 668
Score = 38 (18.4 bits), Expect = 9.5e-05, Sum P(3) = 9.5e-05
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 256 DVVYGEFNDG 265
D +Y EFN+G
Sbjct: 676 DSIYNEFNNG 685
>UNIPROTKB|A9WD21 [details] [associations]
symbol:Caur_0339 "DNA mismatch repair protein MutS domain
protein" species:324602 "Chloroflexus aurantiacus J-10-fl"
[GO:0003684 "damaged DNA binding" evidence=IBA] [GO:0006298
"mismatch repair" evidence=IBA] [GO:0008094 "DNA-dependent ATPase
activity" evidence=IBA] [GO:0030983 "mismatched DNA binding"
evidence=IBA] [GO:0032300 "mismatch repair complex" evidence=IBA]
InterPro:IPR000432 Pfam:PF00488 SMART:SM00534 GO:GO:0005524
GO:GO:0003684 GO:GO:0006298 GO:GO:0030983 EMBL:CP000909
GenomeReviews:CP000909_GR GO:GO:0008094 eggNOG:COG0249
GO:GO:0032300 RefSeq:YP_001633979.1 ProteinModelPortal:A9WD21
GeneID:5827952 KEGG:cau:Caur_0339 PATRIC:21411210
HOGENOM:HOG000020534 OMA:THFEREE ProtClustDB:CLSK865138
BioCyc:CAUR324602:GIXU-342-MONOMER Uniprot:A9WD21
Length = 508
Score = 129 (50.5 bits), Expect = 0.00013, P = 0.00013
Identities = 33/135 (24%), Positives = 62/135 (45%)
Query: 796 IITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
++TGPN GGK+ + R + +A +G VP A L + D I+T + Q R
Sbjct: 332 VVTGPNQGGKTTFARMFGQLHYLASLGCPVPGREAGLFLADRIFTHFERIEDSQNLRGKL 391
Query: 856 LEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915
++L L T S+ I++E+ T+ D + ++ + L + + ++VT
Sbjct: 392 EDDLVRMHRALIQATPDSIFILNEIFSSTTVQDALFLSKEIMARLTD-LDVLGVWVTFLD 450
Query: 916 KIADIKTKFTGSVGT 930
++A + K V +
Sbjct: 451 ELASLSEKMVSMVAS 465
>UNIPROTKB|A3KGN2 [details] [associations]
symbol:MSH5 "MutS protein homolog 5" species:9606 "Homo
sapiens" [GO:0005524 "ATP binding" evidence=IEA] [GO:0006298
"mismatch repair" evidence=IEA] [GO:0030983 "mismatched DNA
binding" evidence=IEA] InterPro:IPR000432 Pfam:PF00488
PROSITE:PS00486 GO:GO:0005524 GO:GO:0006298 GO:GO:0030983
EMBL:AL844216 HGNC:HGNC:7328 ChiTaRS:MSH5 SMR:A3KGN2
Ensembl:ENST00000445511 Uniprot:A3KGN2
Length = 65
Score = 98 (39.6 bits), Expect = 0.00079, P = 0.00079
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 870 TAQSLVIVDELGRGTSTHDGVAIAYATL-DYLLEHKKCMVLFV-THYPKIADIKTKFTGS 927
TAQSLV++DE G+GT+T DG+A+ A L +L C +FV T++ + ++ G
Sbjct: 1 TAQSLVLIDEFGKGTNTVDGLALLAAVLRHWLARGPTCPHIFVATNFLSLVQLQLLPQGP 60
Query: 928 VGTY 931
+ Y
Sbjct: 61 LVQY 64
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.134 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1083 997 0.0010 122 3 11 22 0.39 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 186
No. of states in DFA: 620 (66 KB)
Total size of DFA: 417 KB (2202 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 81.25u 0.12s 81.37t Elapsed: 00:00:04
Total cpu time: 81.32u 0.12s 81.44t Elapsed: 00:00:04
Start: Tue May 21 18:58:11 2013 End: Tue May 21 18:58:15 2013
WARNINGS ISSUED: 1