BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001405
(1083 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3THW|B Chain B, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4) And
Adp
pdb|3THX|B Chain B, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3) And
Adp
pdb|3THY|B Chain B, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2) And
Adp
pdb|3THZ|B Chain B, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6) And
Adp
Length = 918
Score = 582 bits (1500), Expect = e-166, Method: Compositional matrix adjust.
Identities = 343/945 (36%), Positives = 517/945 (54%), Gaps = 85/945 (8%)
Query: 79 PSSQTTHNKK-YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLD 137
P S +K YTPLE Q +E+K ++ D +L +E GYK+RFFGEDAE+AA+ L IY HLD
Sbjct: 2 PKSANKRSKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLD 61
Query: 138 HNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKA 197
HNFMTASIPT RL VHVRRLV G+KVGVVKQTETAA+KA G ++ F R L+ALYTK+
Sbjct: 62 HNFMTASIPTHRLFVHVRRLVAKGYKVGVVKQTETAALKAIGDNRSSLFSRKLTALYTKS 121
Query: 198 TL---------XXXXXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVV 248
TL ++YL+C+ ++ NV + G ++ +G+V
Sbjct: 122 TLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKENVRDKKKG------NIFIGIV 175
Query: 249 AVEISTGDVVYGEFNDGFLRSGXXXXXXXXXXXXXXXGQPLSKQTEKML---LAYAGPAS 305
V+ +TG+VV+ F D RS LS+QTE ++ + +
Sbjct: 176 GVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDD 235
Query: 306 NVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP 365
+RVE F A V Y +DT+ Q I GI+N+
Sbjct: 236 RIRVERMDNIYFEYSHAFQAVTEFY---AKDTVDIKGSQ------------IISGIVNLE 280
Query: 366 DLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSME-MTLSANTLQQLEVLRNNSNGSE 424
+ +LA I++LK+F LE+++ +F+ LS ME MT++ TL+ LE+L+N ++
Sbjct: 281 KPVICSLAAIIKYLKEFNLEKMLSKPENFKQLSSKMEFMTINGTTLRNLEILQNQTDMKT 340
Query: 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQH 484
G+LL +++HT T +G R L++WVT PL I+ARLDAVSE+ S S
Sbjct: 341 KGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHSESS---------- 390
Query: 485 DEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGK 544
+ + L + PDI+RG+ I+H+ + EF +++ +
Sbjct: 391 ----------------VFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLY---- 430
Query: 545 QLQQLHIDGEYREKVTSKTLH--SALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDL 602
H+ E++ + + H S LL+ +IL P ++ L +N++AA GD
Sbjct: 431 -----HLKSEFQAIIPAVNSHIQSDLLRTVILEI--PELLSPVEHYLKILNEQAAKVGDK 483
Query: 603 LNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELP- 661
L F + + + +Q +E+ + RK L + ++++VSG +IE+
Sbjct: 484 TELFK-DLSDFPLIKKRKDEIQGVIDEIRMHLQEIRKILKNPSAQYVTVSGQEFMIEIKN 542
Query: 662 -ANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYY 720
A +P +W KV STK R+HSP ++ L E+L + C A W FL++F +Y
Sbjct: 543 SAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAEWLDFLEKFSEHY 602
Query: 721 AEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LD 778
++ ++ RP E +I I +GRHPV+D +L D
Sbjct: 603 HSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTV---QEERKIVIKNGRHPVIDVLLGEQD 659
Query: 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGI 838
+VPN+T+L + E IITGPNMGGKS YI+QVALI IMAQ+GS+VPA A + ++DGI
Sbjct: 660 QYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGI 719
Query: 839 YTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLD 898
+TRMGA+D+I +GRSTF+EEL + + I+R T+QSLVI+DELGRGTSTHDG+AIAYATL+
Sbjct: 720 FTRMGAADNIYKGRSTFMEELTDTAEIIRKATSQSLVILDELGRGTSTHDGIAIAYATLE 779
Query: 899 YLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS--HKVMGPMDSKSDQD-VTY 955
Y + K + LFVTHYP + +++ ++ VG YH+ +L S + P ++ D VT+
Sbjct: 780 YFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDPGAAEQVPDFVTF 839
Query: 956 LYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000
LY++ G++ S+G VA+LA +P + +A + +LE ++++
Sbjct: 840 LYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTK 884
>pdb|2O8B|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|B Chain B, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8E|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
pdb|2O8F|B Chain B, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
Length = 1022
Score = 251 bits (641), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 252/976 (25%), Positives = 417/976 (42%), Gaps = 129/976 (13%)
Query: 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFR 149
TP ++ ++K++ D+++ +VG + + DA + LG+ + N+ + P
Sbjct: 69 TPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIGVSELGL-VFMKGNWAHSGFPEIA 127
Query: 150 LNVHVRRLVNAGFKVGVVKQTETAAIK-------AHGPGKAGPFGRGLSALYTKATLXXX 202
+ LV G+KV V+QTET + AH R + + TK T
Sbjct: 128 FGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGT---Q 184
Query: 203 XXXXXXXXXXXXXSNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEF 262
S YL+ + + + + G GV V+ S G G+F
Sbjct: 185 TYSVLEGDPSENYSKYLLSLKEKEED---------SSGHTRAYGVCFVDTSLGKFFIGQF 235
Query: 263 NDG--FLRSGXXXXXXXXXXXXXXXGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGG 320
+D R G LSK+T+ +L + + C+ ++ I G
Sbjct: 236 SDDRHCSRFRTLVAHYPPVQVLFEKGN-LSKETKTILKS--------SLSCSLQEGLIPG 286
Query: 321 GALAEVMS-----LYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMP----DLAVQA 371
+ L E + LS+ + +G S + I P +LA+ A
Sbjct: 287 SQFWDASKTLRTLLEEEYFREKLSDGIGVMLPQVLKG-MTSESDSIGLTPGEKSELALSA 345
Query: 372 LALTIRHLKQFGLERIMCLGASFR------------SLSGSM------EMTLSANTLQQL 413
L + +LK+ +++ + A+F + SG++ M L A TL L
Sbjct: 346 LGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNL 405
Query: 414 EVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMG 473
E+ N +NGS GTLL ++ T +G RLL++W+ PLC+ I+ RLDA+
Sbjct: 406 EIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIE------- 458
Query: 474 SYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATP--SE 531
D+ +V + +S V+ L + PD++R +++I H +P S+
Sbjct: 459 ----------------DLMVVPDK----ISEVVELLKKLPDLERLLSKI-HNVGSPLKSQ 497
Query: 532 FIAVMQAILYAGKQLQQLHIDGEYRE----KVTSKTL----------HSALLKRLI-LTA 576
+AI+Y + I KV K + S +LK++I L
Sbjct: 498 NHPDSRAIMYEETTYSKKKIIDFLSALEGFKVMCKIIGIMEEVADGFKSKILKQVISLQT 557
Query: 577 SSPAVIGKAAKLLSTVNKEAA----DQGDLLNLMIISNGQFSEVARARKAVQSAKEELDS 632
+P G+ L +N+ ++ L+ G S+ +A ++ ++ L
Sbjct: 558 KNPE--GRFPDLTVELNRWDTAFDHEKARKTGLITPKAGFDSDYDQALADIRENEQSLLE 615
Query: 633 LINMCRKQLGMRNLEFMSVSGITHLIELPANF---KVPLNWAKVNSTKKTIRYHSPEVLT 689
+ R ++G R + + + + +E+P NF +P + ++ K RY + +
Sbjct: 616 YLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEK 675
Query: 690 ALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKN-- 747
L L A E + + F Y ++ SR +
Sbjct: 676 KLANLINAEERRDVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGP 735
Query: 748 FVRPV-FVDDHEPVQIHICSGRHPVL-DTILLDNFVPNDTNLHAERE-------YCQIIT 798
RPV + + P + + RHP + T D+F+PND + E E YC ++T
Sbjct: 736 MCRPVILLPEDTPPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVT 795
Query: 799 GPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEE 858
GPNMGGKS +RQ L+ +MAQ+G +VPA L +D ++TR+GASD I G STF E
Sbjct: 796 GPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMSGESTFFVE 855
Query: 859 LNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918
L+E + IL + TA SLV+VDELGRGT+T DG AIA A + L E KC LF THY +
Sbjct: 856 LSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLV 915
Query: 919 DIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978
+ ++ +V H++ + ++ P S + +T+LYK + G S+GF A+LA L
Sbjct: 916 EDYSQNV-AVRLGHMACMVENECEDP----SQETITFLYKFIKGACPKSYGFNAARLANL 970
Query: 979 PPSCISRATVIAAKLE 994
P I + A + E
Sbjct: 971 PEEVIQKGHRKAREFE 986
>pdb|1OH5|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH5|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A C:a Mismatch
pdb|1OH6|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH6|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An A:a Mismatch
pdb|1OH7|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH7|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:g Mismatch
pdb|1OH8|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1OH8|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
An Unpaired Thymidine
pdb|1W7A|A Chain A, Atp Bound Muts
pdb|1W7A|B Chain B, Atp Bound Muts
pdb|2WTU|A Chain A, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch.
pdb|2WTU|B Chain B, Crystal Structure Of Escherichia Coli Muts In Complex With
A 16 Basepair Oligo Containing An A.A Mismatch
Length = 800
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/597 (28%), Positives = 282/597 (47%), Gaps = 69/597 (11%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 267 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 326 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 355
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVI 582
RTA P + +A M+ +A +QL +L E + + L +
Sbjct: 356 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKM-------------- 397
Query: 583 GKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
G+ A+L + + D +L + +I++G E+ R A + L+ L R++
Sbjct: 398 GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER 457
Query: 641 LGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 458 TGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK 517
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
+ + + ++ + + N+ P F+D +
Sbjct: 518 GKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID--K 575
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +M
Sbjct: 576 P-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIALM 633
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
A +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV++D
Sbjct: 634 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 693
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938
E+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 694 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL-- 750
Query: 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ + +++ V G + S+G VA LA +P I RA +LE+
Sbjct: 751 ---------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|1WBD|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
pdb|1WBD|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38q Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 217 bits (553), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 169/597 (28%), Positives = 282/597 (47%), Gaps = 69/597 (11%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 267 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 326 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 355
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVI 582
RTA P + +A M+ +A +QL +L E + + L +
Sbjct: 356 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKM-------------- 397
Query: 583 GKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
G+ A+L + + D +L + +I++G E+ R A + L+ L R++
Sbjct: 398 GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER 457
Query: 641 LGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 458 TGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK 517
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
+ + + ++ + + N+ P F+D +
Sbjct: 518 GKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID--K 575
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +M
Sbjct: 576 P-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIALM 633
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
A +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV++D
Sbjct: 634 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 693
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938
E+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 694 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL-- 750
Query: 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ + +++ V G + S+G VA LA +P I RA +LE+
Sbjct: 751 ---------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 56/116 (48%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G ++ F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYQLFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|1WBB|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
pdb|1WBB|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38a Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 169/597 (28%), Positives = 282/597 (47%), Gaps = 69/597 (11%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 267 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 326 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 355
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVI 582
RTA P + +A M+ +A +QL +L E + + L +
Sbjct: 356 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKM-------------- 397
Query: 583 GKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
G+ A+L + + D +L + +I++G E+ R A + L+ L R++
Sbjct: 398 GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER 457
Query: 641 LGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 458 TGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK 517
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
+ + + ++ + + N+ P F+D +
Sbjct: 518 GKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID--K 575
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +M
Sbjct: 576 P-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIALM 633
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
A +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV++D
Sbjct: 634 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 693
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938
E+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 694 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL-- 750
Query: 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ + +++ V G + S+G VA LA +P I RA +LE+
Sbjct: 751 ---------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYALFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|1WB9|A Chain A, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
pdb|1WB9|B Chain B, Crystal Structure Of E. Coli Dna Mismatch Repair Enzyme
Muts, E38t Mutant, In Complex With A G.T Mismatch
Length = 800
Score = 217 bits (553), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 169/597 (28%), Positives = 282/597 (47%), Gaps = 69/597 (11%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 267 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 326 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 355
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVI 582
RTA P + +A M+ +A +QL +L E + + L +
Sbjct: 356 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKM-------------- 397
Query: 583 GKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
G+ A+L + + D +L + +I++G E+ R A + L+ L R++
Sbjct: 398 GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER 457
Query: 641 LGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 458 TGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK 517
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
+ + + ++ + + N+ P F+D +
Sbjct: 518 GKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID--K 575
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +M
Sbjct: 576 P-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIALM 633
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
A +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV++D
Sbjct: 634 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMD 693
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938
E+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 694 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL-- 750
Query: 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ + +++ V G + S+G VA LA +P I RA +LE+
Sbjct: 751 ---------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|3K0S|A Chain A, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
pdb|3K0S|B Chain B, Crystal Structure Of E.Coli Dna Mismatch Repair Protein
Muts, D693n Mutant, In Complex With Gt Mismatched Dna
Length = 799
Score = 215 bits (548), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 168/597 (28%), Positives = 282/597 (47%), Gaps = 69/597 (11%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 266 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 324
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 325 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 354
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVI 582
RTA P + +A M+ +A +QL +L E + + L +
Sbjct: 355 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKM-------------- 396
Query: 583 GKAAKLLSTVNKEAADQGDLL--NLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQ 640
G+ A+L + + D +L + +I++G E+ R A + L+ L R++
Sbjct: 397 GEFAELRDLLERAIIDTPPVLVRDGGVIASGYNEELDEWRALADGATDYLERLEVRERER 456
Query: 641 LGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALAN 698
G+ L+ F +V G I + P+N+ + + K RY PE+ D++ +
Sbjct: 457 TGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSK 516
Query: 699 EELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRPVFVDDHE 758
+ + + ++ + + N+ P F+D +
Sbjct: 517 GKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCPTFID--K 574
Query: 759 PVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM 818
P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ ALI +M
Sbjct: 575 P-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQTALIALM 632
Query: 819 AQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVD 878
A +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T SLV+++
Sbjct: 633 AYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMN 692
Query: 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938
E+GRGTST+DG+++A+A + L K + LF THY ++ + K G V H+ L
Sbjct: 693 EIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDAL-- 749
Query: 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995
+ + +++ V G + S+G VA LA +P I RA +LE+
Sbjct: 750 ---------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 797
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 9 HTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMA 68
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 69 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 118
>pdb|1NG9|A Chain A, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
pdb|1NG9|B Chain B, E.Coli Muts R697a: An Atpase-Asymmetry Mutant
Length = 800
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 173/604 (28%), Positives = 283/604 (46%), Gaps = 83/604 (13%)
Query: 403 MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARL 462
+ + A T + LE+ +N + G+E TL +++ T+T GSR+L+RW+ P+ D ++ R
Sbjct: 267 IIMDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQ 325
Query: 463 DAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRI 522
+ + + F L VL +G D++R + R+
Sbjct: 326 QTIGALQD---------------------------FTAGLQPVLRQVG---DLERILARL 355
Query: 523 FHRTATPSEFIAVMQAILYAGKQLQQLHIDGE---------YREKVTSKTLHSALLKRLI 573
RTA P + +A M+ +A +QL +L E REK+ LL+R I
Sbjct: 356 ALRTARPRD-LARMR---HAFQQLPELRAQLETVDSAPVQALREKMGEFAELRDLLERAI 411
Query: 574 LTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSL 633
+ +P V+ + D G +I++G E+ R A + L+ L
Sbjct: 412 I--DTPPVLVR-------------DGG------VIASGYNEELDEWRALADGATDYLERL 450
Query: 634 INMCRKQLGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKTIRYHSPEVLTAL 691
R++ G+ L+ F +V G I + P+N+ + + K RY PE+
Sbjct: 451 EVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYE 510
Query: 692 DQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXXXXXSRNKNFVRP 751
D++ + + + + ++ + + N+ P
Sbjct: 511 DKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNLAERAYTLNYTCP 570
Query: 752 VFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQ 811
F+D +P I I GRHPV++ +L + F+ N NL +R IITGPNMGGKS Y+RQ
Sbjct: 571 TFID--KP-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRML-IITGPNMGGKSTYMRQ 626
Query: 812 VALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTA 871
ALI +MA +GS+VPA E+ +D I+TR+GA+D + GRSTF+ E+ E + IL N T
Sbjct: 627 TALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATE 686
Query: 872 QSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTY 931
SLV++DE+G GTST+DG+++A+A + L K + LF THY ++ + K G V
Sbjct: 687 YSLVLMDEIGAGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANV 745
Query: 932 HVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAA 991
H+ L + + +++ V G + S+G VA LA +P I RA
Sbjct: 746 HLDAL-----------EHGDTIAFMHSVQDGAASKSYGLAVAALAGVPKEVIKRARQKLR 794
Query: 992 KLEA 995
+LE+
Sbjct: 795 ELES 798
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP+ QQ + LK ++P++LL +G + F +DA+ A+++L I A A
Sbjct: 10 HTPMMQQYLRLKAQHPEILLFYRMGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPMA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|1E3M|A Chain A, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
pdb|1E3M|B Chain B, The Crystal Structure Of E. Coli Muts Binding To Dna With
A G:t Mismatch
Length = 800
Score = 202 bits (514), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 173/616 (28%), Positives = 274/616 (44%), Gaps = 86/616 (13%)
Query: 394 FRSLSGSME---MTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450
RS++ E + A T + LE+ +N + G+E TL +++ T+T GSR L+RW+
Sbjct: 255 IRSITXEREQDSIIXDAATRRNLEITQNLAGGAE-NTLASVLDCTVTPXGSRXLKRWLHX 313
Query: 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLG 510
P+ D ++ R + + + F L VL +G
Sbjct: 314 PVRDTRVLLERQQTIGALQD---------------------------FTAGLQPVLRQVG 346
Query: 511 RSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGE---------YREKVTS 561
D++R + R+ RTA P + A +QL +L E REK
Sbjct: 347 ---DLERILARLALRTARPRDLARXRHAF----QQLPELRAQLETVDSAPVQALREKXGE 399
Query: 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARK 621
LL+R I+ +P V+ + D G +I++G E+ R
Sbjct: 400 FAELRDLLERAII--DTPPVLVR-------------DGG------VIASGYNEELDEWRA 438
Query: 622 AVQSAKEELDSLINMCRKQLGMRNLE--FMSVSGITHLIELPANFKVPLNWAKVNSTKKT 679
A + L+ L R++ G+ L+ F +V G I + P+N+ + + K
Sbjct: 439 LADGATDYLERLEVRERERTGLDTLKVGFNAVHGYYIQISRGQSHLAPINYXRRQTLKNA 498
Query: 680 IRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFXXXXXXXXXXXXXXXX 739
RY PE+ D++ + + + + ++ +
Sbjct: 499 ERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPHLEALQQSASALAELDVLVNL 558
Query: 740 XXXSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITG 799
+ N+ P F+D +P I I GRHPV++ +L + F+ N NL +R IITG
Sbjct: 559 AERAYTLNYTCPTFID--KP-GIRITEGRHPVVEQVLNEPFIANPLNLSPQRRXL-IITG 614
Query: 800 PNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEEL 859
PN GGKS Y RQ ALI + A +GS+VPA E+ +D I+TR+GA+D + GRSTF E
Sbjct: 615 PNXGGKSTYXRQTALIALXAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFXVEX 674
Query: 860 NEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919
E + IL N T SLV+ DE+GRGTST+DG+++A+A + L K + LF THY ++
Sbjct: 675 TETANILHNATEYSLVLXDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQ 734
Query: 920 IKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLP 979
+ K G V H+ L + + + + V G + S+G VA LA +P
Sbjct: 735 LPEKXEG-VANVHLDAL-----------EHGDTIAFXHSVQDGAASKSYGLAVAALAGVP 782
Query: 980 PSCISRATVIAAKLEA 995
I RA +LE+
Sbjct: 783 KEVIKRARQKLRELES 798
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 11/116 (9%)
Query: 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIY-----AHLDHNFMTA 143
+TP QQ + LK ++P++LL G + F +DA+ A+++L I A A
Sbjct: 10 HTPXXQQYLRLKAQHPEILLFYRXGDFYELFYDDAKRASQLLDISLTKRGASAGEPIPXA 69
Query: 144 SIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATL 199
IP + ++ +LVN G V + +Q A GP R + + T T+
Sbjct: 70 GIPYHAVENYLAKLVNQGESVAICEQIGDPAT------SKGPVERKVVRIVTPGTI 119
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 179 bits (453), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 99/243 (40%), Positives = 144/243 (59%), Gaps = 25/243 (10%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRP F D ++ I +GRHPV++ FVPND + E +ITGPNM GKS
Sbjct: 541 GYVRPRFGD-----RLQIRAGRHPVVER--RTEFVPNDLEMAHE---LVLITGPNMAGKS 590
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ ALI ++AQVGSFVPA A L + DGIYTR+GASD + G+STF+ E+ E + IL
Sbjct: 591 TFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALIL 650
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
+ T SLV++DE+GRGTS+ DGVAIA A + L E ++ LF THY ++ +
Sbjct: 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALGLP--- 706
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986
+ HV+ + + + ++V+PG + S+G +VA +A LP ++RA
Sbjct: 707 RLKNLHVA-----------AREEAGGLVFYHQVLPGPASKSYGVEVAAMAGLPKEVVARA 755
Query: 987 TVI 989
+
Sbjct: 756 RAL 758
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 91 PLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH----NFMT--AS 144
PL QQ VEL+ +YPD LL+ +VG + FGEDAE A+ LG+ L H +F T A
Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV--LTHKTSKDFTTPMAG 72
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXX 204
IP + RL+ GF++ V Q E A +A G + R ++ L T TL
Sbjct: 73 IPLRAFEAYAERLLKMGFRLAVADQVEPAE-EAEGLVR-----REVTQLLTPGTL----- 121
Query: 205 XXXXXXXXXXXSNYLVCVVDDDG 227
+NYL + DG
Sbjct: 122 --LQESLLPREANYLAAIATGDG 142
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Query: 394 FRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLC 453
FR M L TL+ LEV G + TL +++ T T G RLL+ W+ HPL
Sbjct: 241 FRFYDPGAFMRLPEATLRALEVF-EPLRGQD--TLFSVLDETRTAPGRRLLQSWLRHPLL 297
Query: 454 DRNLISARLDAVS 466
DR + ARLD V
Sbjct: 298 DRGPLEARLDRVE 310
>pdb|2O8B|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G T MISPAIR
pdb|2O8C|A Chain A, Human Mutsalpha (msh2/msh6) Bound To Adp And An
O6-methyl-guanine T Mispair
pdb|2O8D|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO ADP AND A G DU MISPAIR
pdb|2O8F|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO DNA WITH A SINGLE BASE
T INSERT
pdb|3THW|A Chain A, Human Mutsbeta Complexed With An Idl Of 4 Bases (Loop4)
And Adp
pdb|3THX|A Chain A, Human Mutsbeta Complexed With An Idl Of 3 Bases (Loop3)
And Adp
pdb|3THY|A Chain A, Human Mutsbeta Complexed With An Idl Of 2 Bases (Loop2)
And Adp
pdb|3THZ|A Chain A, Human Mutsbeta Complexed With An Idl Of 6 Bases (Loop6)
And Adp
Length = 934
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 144/247 (58%), Gaps = 13/247 (5%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
+VRP ++ + +I + + RH ++ F+PND +++ IITGPNMGGKS
Sbjct: 619 YVRPAILEKGQG-RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKST 677
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +G STF+ E+ E + ILR
Sbjct: 678 YIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 737
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ T SL+I+DELGRGTST+DG +A+A +Y+ +F TH+ ++ + + +
Sbjct: 738 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-T 796
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V HV+ LT+ + + T LY+V GV + SFG VA+LA P I A
Sbjct: 797 VNNLHVTALTTEETL-----------TMLYQVKKGVCDQSFGIHVAELANFPKHVIECAK 845
Query: 988 VIAAKLE 994
A +LE
Sbjct: 846 QKALELE 852
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
++ GS+ +L ++N T G RL+ +W+ PL D+N I RL+ V E
Sbjct: 319 DTTGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVE 368
>pdb|2O8E|A Chain A, Human Mutsalpha (Msh2MSH6) BOUND TO A G T MISPAIR, WITH
ADP BOUND TO Msh2 Only
Length = 934
Score = 171 bits (432), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 144/247 (58%), Gaps = 13/247 (5%)
Query: 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSC 807
+VRP ++ + +I + + RH ++ F+PND +++ IITGPNMGGKS
Sbjct: 619 YVRPAILEKGQG-RIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKST 677
Query: 808 YIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILR 867
YIRQ +I +MAQ+G FVP SAE+ ++D I R+GA DS +G STF+ E+ E + ILR
Sbjct: 678 YIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAEMLETASILR 737
Query: 868 NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGS 927
+ T SL+I+DELGRGTST+DG +A+A +Y+ +F TH+ ++ + + +
Sbjct: 738 SATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIP-T 796
Query: 928 VGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRAT 987
V HV+ LT+ + + T LY+V GV + SFG VA+LA P I A
Sbjct: 797 VNNLHVTALTTEETL-----------TMLYQVKKGVCDQSFGIHVAELANFPKHVIECAK 845
Query: 988 VIAAKLE 994
A +LE
Sbjct: 846 QKALELE 852
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 419 NSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAE 470
++ GS+ +L ++N T G RL+ +W+ PL D+N I RL+ V E
Sbjct: 319 DTTGSQ--SLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVE 368
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 25/237 (10%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRP F D ++ I +GRHPV++ FVPND E +ITGPN GKS
Sbjct: 425 GYVRPRFGD-----RLQIRAGRHPVVER--RTEFVPNDLEXAHE---LVLITGPNXAGKS 474
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ ALI ++AQVGSFVPA A L + DGIYTR+GASD + G+STF E E + IL
Sbjct: 475 TFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALIL 534
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
+ T SLV++DE+GRGTS+ DGVAIA A + L E ++ LF THY ++ +
Sbjct: 535 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALGLP--- 590
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
+ HV+ + + + ++V+PG + S+G +VA A LP +
Sbjct: 591 RLKNLHVA-----------AREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 636
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 405 LSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDA 464
L TL+ LEV G + TL +++ T T G RLL+ W+ HPL DR + ARLD
Sbjct: 136 LPEATLRALEVF-EPLRGQD--TLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDR 192
Query: 465 VS 466
V
Sbjct: 193 VE 194
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 25/237 (10%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRP F D ++ I +GRHPV++ FVPND E +ITGPN GKS
Sbjct: 541 GYVRPRFGD-----RLQIRAGRHPVVER--RTEFVPNDLEXAHE---LVLITGPNXAGKS 590
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ ALI ++AQVGSFVPA A L + DGIYTR+GASD + G+STF E E + IL
Sbjct: 591 TFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALIL 650
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
+ T SLV++DE+GRGTS+ DGVAIA A + L E ++ LF THY ++ +
Sbjct: 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALGLP--- 706
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
+ HV+ + + + ++V+PG + S+G +VA A LP +
Sbjct: 707 RLKNLHVA-----------AREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 91 PLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH----NFMT--AS 144
PL QQ VEL+ +YPD LL+ +VG + FGEDAE A+ LG+ L H +F T A
Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV--LTHKTSKDFTTPXAG 72
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXX 204
IP + RL+ GF++ V Q E A +A G + R ++ L T TL
Sbjct: 73 IPLRAFEAYAERLLKXGFRLAVADQVEPAE-EAEGLVR-----REVTQLLTPGTL----- 121
Query: 205 XXXXXXXXXXXSNYLVCVVDDDG 227
+NYL + DG
Sbjct: 122 --LQESLLPREANYLAAIATGDG 142
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 394 FRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLC 453
FR L TL+ LEV G + TL +++ T T G RLL+ W+ HPL
Sbjct: 241 FRFYDPGAFXRLPEATLRALEVF-EPLRGQD--TLFSVLDETRTAPGRRLLQSWLRHPLL 297
Query: 454 DRNLISARLDAVS 466
DR + ARLD V
Sbjct: 298 DRGPLEARLDRVE 310
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 166 bits (420), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 96/237 (40%), Positives = 135/237 (56%), Gaps = 25/237 (10%)
Query: 747 NFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKS 806
+VRP F D ++ I +GRHPV++ FVPND E +ITGPN GKS
Sbjct: 541 GYVRPRFGD-----RLQIRAGRHPVVER--RTEFVPNDLEXAHE---LVLITGPNXAGKS 590
Query: 807 CYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866
++RQ ALI ++AQVGSFVPA A L + DGIYTR+GASD + G+STF E E + IL
Sbjct: 591 TFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFXVEXEEVALIL 650
Query: 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926
+ T SLV++DE+GRGTS+ DGVAIA A + L E ++ LF THY ++ +
Sbjct: 651 KEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALGLP--- 706
Query: 927 SVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983
+ HV+ + + + ++V+PG + S+G +VA A LP +
Sbjct: 707 RLKNLHVA-----------AREEAGGLVFYHQVLPGPASKSYGVEVAAXAGLPKEVV 752
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 68/143 (47%), Gaps = 21/143 (14%)
Query: 91 PLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH----NFMT--AS 144
PL QQ VEL+ +YPD LL+ +VG + FGEDAE A+ LG+ L H +F T A
Sbjct: 15 PLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLV--LTHKTSKDFTTPXAG 72
Query: 145 IPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLXXXXX 204
IP + RL+ GF++ V Q E A +A G + R ++ L T TL
Sbjct: 73 IPLRAFEAYAERLLKXGFRLAVADQVEPAE-EAEGLVR-----REVTQLLTPGTL----- 121
Query: 205 XXXXXXXXXXXSNYLVCVVDDDG 227
+NYL + DG
Sbjct: 122 --LQESLLPREANYLAAIATGDG 142
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 394 FRSLSGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLC 453
FR L TL+ LEV G + TL +++ T T G RLL+ W+ HPL
Sbjct: 241 FRFYDPGAFXRLPEATLRALEVF-EPLRGQD--TLFSVLDETRTAPGRRLLQSWLRHPLL 297
Query: 454 DRNLISARLDAVS 466
DR + ARLD V
Sbjct: 298 DRGPLEARLDRVE 310
>pdb|3O8O|B Chain B, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|D Chain D, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|F Chain F, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
pdb|3O8O|H Chain H, Structure Of Phosphofructokinase From Saccharomyces
Cerevisiae
Length = 766
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 20/104 (19%)
Query: 771 VLDTILLDNFVP-------NDTNLHAEREYCQIITGPN------------MGGKSCYIRQ 811
VL L N VP +DT L+A EYC ++ GG S Y+
Sbjct: 518 VLIPATLSNNVPGTEYSLGSDTALNALMEYCDVVKQSASSTRGRAFVVDCQGGNSGYLAT 577
Query: 812 VALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTF 855
A + + AQV S+VP L L + S +GR F
Sbjct: 578 YASLAVGAQV-SYVPEEGISLEQLSEDIEYLAQSFEKAEGRGRF 620
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.380
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,446,920
Number of Sequences: 62578
Number of extensions: 1049259
Number of successful extensions: 2758
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2673
Number of HSP's gapped (non-prelim): 46
length of query: 1083
length of database: 14,973,337
effective HSP length: 109
effective length of query: 974
effective length of database: 8,152,335
effective search space: 7940374290
effective search space used: 7940374290
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)