Query 001405
Match_columns 1083
No_of_seqs 530 out of 3499
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 23:59:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001405.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001405hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0218 Mismatch repair MSH3 [ 100.0 5E-162 1E-166 1362.8 65.9 866 86-1002 159-1036(1070)
2 TIGR01070 mutS1 DNA mismatch r 100.0 3E-145 7E-150 1352.0 83.8 777 89-996 1-784 (840)
3 COG0249 MutS Mismatch repair A 100.0 4E-145 8E-150 1334.1 77.8 796 86-998 3-801 (843)
4 PRK05399 DNA mismatch repair p 100.0 1E-143 3E-148 1346.5 86.0 788 85-996 4-799 (854)
5 KOG0217 Mismatch repair ATPase 100.0 5E-133 1E-137 1174.5 53.0 848 67-998 219-1094(1125)
6 KOG0219 Mismatch repair ATPase 100.0 2.2E-85 4.7E-90 757.8 54.4 802 91-999 14-840 (902)
7 KOG0220 Mismatch repair ATPase 100.0 7.5E-78 1.6E-82 684.5 51.1 692 215-1001 102-819 (867)
8 PRK00409 recombination and DNA 100.0 2.4E-68 5.2E-73 660.4 57.7 502 429-1003 16-524 (782)
9 KOG0221 Mismatch repair ATPase 100.0 3.1E-67 6.6E-72 586.9 40.6 707 216-997 48-797 (849)
10 TIGR01069 mutS2 MutS2 family p 100.0 5.7E-63 1.2E-67 610.7 58.3 496 429-1003 16-519 (771)
11 PF00488 MutS_V: MutS domain V 100.0 1.4E-48 3.1E-53 421.7 17.3 233 748-995 1-234 (235)
12 cd03287 ABC_MSH3_euk MutS3 hom 100.0 4.4E-45 9.5E-50 390.1 19.4 222 762-986 1-222 (222)
13 cd03286 ABC_MSH6_euk MutS6 hom 100.0 1E-44 2.3E-49 386.2 18.8 217 764-986 2-218 (218)
14 cd03285 ABC_MSH2_euk MutS2 hom 100.0 1.3E-42 2.9E-47 373.0 21.1 220 764-993 2-221 (222)
15 COG1193 Mismatch repair ATPase 100.0 1.1E-40 2.3E-45 404.5 37.9 492 430-1003 15-512 (753)
16 cd03284 ABC_MutS1 MutS1 homolo 100.0 4.7E-40 1E-44 352.1 20.5 213 764-989 2-215 (216)
17 smart00533 MUTSd DNA-binding d 100.0 5.1E-37 1.1E-41 348.1 33.5 305 425-774 1-307 (308)
18 cd03282 ABC_MSH4_euk MutS4 hom 100.0 1.5E-38 3.3E-43 336.7 19.1 201 764-977 2-203 (204)
19 cd03281 ABC_MSH5_euk MutS5 hom 100.0 3E-38 6.6E-43 337.4 19.6 208 764-978 2-213 (213)
20 smart00534 MUTSac ATPase domai 100.0 1.5E-36 3.2E-41 318.2 17.7 185 794-990 1-185 (185)
21 cd03283 ABC_MutS-like MutS-lik 100.0 5.7E-36 1.2E-40 316.5 18.7 196 764-978 2-199 (199)
22 cd03280 ABC_MutS2 MutS2 homolo 100.0 2.2E-34 4.8E-39 305.7 18.5 198 763-978 1-200 (200)
23 cd03243 ABC_MutS_homologs The 100.0 4E-34 8.6E-39 304.3 17.5 200 764-978 2-202 (202)
24 PF01624 MutS_I: MutS domain I 100.0 4E-32 8.7E-37 260.8 11.4 108 90-203 1-113 (113)
25 PF05192 MutS_III: MutS domain 99.9 4.1E-23 9E-28 219.7 21.0 108 407-541 1-108 (204)
26 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 4.3E-21 9.4E-26 205.4 11.5 142 776-919 14-203 (254)
27 COG4152 ABC-type uncharacteriz 99.8 8.4E-21 1.8E-25 196.7 11.9 151 772-924 8-200 (300)
28 COG1120 FepC ABC-type cobalami 99.8 1.3E-20 2.9E-25 202.8 12.6 146 773-919 9-203 (258)
29 COG1131 CcmA ABC-type multidru 99.8 3.2E-20 6.9E-25 208.0 14.6 147 772-920 10-202 (293)
30 COG1116 TauB ABC-type nitrate/ 99.8 2.3E-20 5.1E-25 197.1 11.9 148 773-921 10-197 (248)
31 cd03227 ABC_Class2 ABC-type Cl 99.8 9E-20 2E-24 187.2 14.0 143 764-936 2-156 (162)
32 COG1126 GlnQ ABC-type polar am 99.8 1.6E-19 3.4E-24 185.2 14.8 145 772-919 8-200 (240)
33 COG4555 NatA ABC-type Na+ tran 99.8 9.9E-20 2.1E-24 183.9 12.3 148 774-924 9-203 (245)
34 COG1127 Ttg2A ABC-type transpo 99.8 1.4E-19 2.9E-24 188.4 13.4 149 774-923 16-215 (263)
35 COG1136 SalX ABC-type antimicr 99.8 3.4E-19 7.4E-24 188.3 14.2 143 779-923 18-211 (226)
36 PRK13537 nodulation ABC transp 99.8 6.6E-19 1.4E-23 199.1 12.9 148 774-923 15-207 (306)
37 PRK13536 nodulation factor exp 99.8 7.6E-19 1.7E-23 200.8 12.7 148 774-923 49-241 (340)
38 COG1137 YhbG ABC-type (unclass 99.8 2.8E-19 6E-24 180.4 5.8 150 772-923 10-208 (243)
39 cd03214 ABC_Iron-Siderophores_ 99.8 1.4E-18 3E-23 181.7 11.3 145 776-922 9-166 (180)
40 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 2.2E-18 4.8E-23 185.8 13.0 142 779-921 17-207 (218)
41 COG2884 FtsE Predicted ATPase 99.8 3.3E-18 7.2E-23 171.6 12.7 139 778-919 14-201 (223)
42 TIGR01188 drrA daunorubicin re 99.8 2.1E-18 4.6E-23 195.0 12.7 145 776-922 3-192 (302)
43 COG1125 OpuBA ABC-type proline 99.8 1.9E-18 4.1E-23 180.5 11.2 150 772-923 7-205 (309)
44 cd03259 ABC_Carb_Solutes_like 99.8 3.2E-18 7E-23 183.8 12.9 142 776-918 10-194 (213)
45 cd03265 ABC_DrrA DrrA is the A 99.8 5.2E-18 1.1E-22 183.1 13.4 143 776-919 10-196 (220)
46 cd03293 ABC_NrtD_SsuB_transpor 99.8 3.5E-18 7.6E-23 184.5 11.8 139 779-918 17-195 (220)
47 cd03225 ABC_cobalt_CbiO_domain 99.8 5.2E-18 1.1E-22 181.9 13.0 139 779-919 14-198 (211)
48 TIGR00960 3a0501s02 Type II (G 99.7 5.1E-18 1.1E-22 182.7 12.6 139 779-919 16-202 (216)
49 cd03226 ABC_cobalt_CbiO_domain 99.7 4.9E-18 1.1E-22 181.3 12.3 142 776-919 9-190 (205)
50 COG3638 ABC-type phosphate/pho 99.7 7E-18 1.5E-22 175.3 12.8 146 773-919 10-212 (258)
51 TIGR03608 L_ocin_972_ABC putat 99.7 5.8E-18 1.3E-22 180.8 12.7 144 776-921 8-200 (206)
52 cd03268 ABC_BcrA_bacitracin_re 99.7 7.8E-18 1.7E-22 180.1 13.6 142 776-919 10-190 (208)
53 TIGR02673 FtsE cell division A 99.7 6.9E-18 1.5E-22 181.4 13.1 140 778-919 14-201 (214)
54 TIGR01288 nodI ATP-binding ABC 99.7 6.1E-18 1.3E-22 191.4 13.1 146 775-922 13-203 (303)
55 TIGR01166 cbiO cobalt transpor 99.7 4.3E-18 9.2E-23 179.5 11.0 139 777-917 3-189 (190)
56 cd03261 ABC_Org_Solvent_Resist 99.7 7.6E-18 1.7E-22 183.7 13.1 143 776-919 10-201 (235)
57 cd03301 ABC_MalK_N The N-termi 99.7 6.3E-18 1.4E-22 181.5 11.7 143 776-919 10-195 (213)
58 PRK11247 ssuB aliphatic sulfon 99.7 9.4E-18 2E-22 185.0 13.2 142 776-918 22-197 (257)
59 cd03218 ABC_YhbG The ABC trans 99.7 1E-17 2.3E-22 182.3 13.2 141 776-918 10-196 (232)
60 TIGR02211 LolD_lipo_ex lipopro 99.7 1.2E-17 2.5E-22 180.5 13.3 140 779-919 18-206 (221)
61 cd03262 ABC_HisP_GlnQ_permease 99.7 1.5E-17 3.3E-22 178.5 14.2 142 776-919 10-199 (213)
62 cd03235 ABC_Metallic_Cations A 99.7 9.5E-18 2.1E-22 180.2 12.5 142 776-919 9-196 (213)
63 cd03269 ABC_putative_ATPase Th 99.7 1.1E-17 2.4E-22 179.2 13.0 142 776-919 10-192 (210)
64 PRK11629 lolD lipoprotein tran 99.7 1.5E-17 3.2E-22 181.3 13.8 140 779-919 22-210 (233)
65 cd03256 ABC_PhnC_transporter A 99.7 1.2E-17 2.6E-22 182.9 13.1 143 776-919 10-209 (241)
66 TIGR03522 GldA_ABC_ATP gliding 99.7 8.2E-18 1.8E-22 190.0 12.2 146 775-923 11-201 (301)
67 COG3842 PotA ABC-type spermidi 99.7 8.8E-18 1.9E-22 188.8 12.2 157 761-923 5-206 (352)
68 cd03238 ABC_UvrA The excision 99.7 4.9E-18 1.1E-22 175.8 9.3 139 778-921 7-155 (176)
69 COG1119 ModF ABC-type molybden 99.7 9.3E-18 2E-22 175.9 11.2 143 776-918 41-236 (257)
70 cd03266 ABC_NatA_sodium_export 99.7 1.6E-17 3.5E-22 179.0 13.5 138 780-919 19-200 (218)
71 TIGR03864 PQQ_ABC_ATP ABC tran 99.7 1.1E-17 2.5E-22 182.5 12.4 144 776-920 11-198 (236)
72 COG1117 PstB ABC-type phosphat 99.7 2.6E-17 5.7E-22 168.1 14.0 159 773-937 14-227 (253)
73 PRK11248 tauB taurine transpor 99.7 9.5E-18 2.1E-22 185.1 11.8 143 776-919 11-193 (255)
74 TIGR02315 ABC_phnC phosphonate 99.7 1.5E-17 3.3E-22 182.3 13.1 140 778-918 14-209 (243)
75 cd03267 ABC_NatA_like Similar 99.7 9.6E-18 2.1E-22 183.0 11.4 154 765-919 20-218 (236)
76 PRK11264 putative amino-acid A 99.7 1.9E-17 4.1E-22 182.3 13.7 142 776-919 13-208 (250)
77 cd03219 ABC_Mj1267_LivG_branch 99.7 1.5E-17 3.3E-22 181.4 12.8 142 776-919 10-207 (236)
78 PRK09536 btuD corrinoid ABC tr 99.7 1.2E-17 2.7E-22 193.9 12.5 147 775-923 12-208 (402)
79 cd03292 ABC_FtsE_transporter F 99.7 2.2E-17 4.8E-22 177.4 13.6 139 779-919 14-200 (214)
80 cd03216 ABC_Carb_Monos_I This 99.7 9.2E-18 2E-22 172.5 10.0 134 776-918 10-145 (163)
81 PRK10584 putative ABC transpor 99.7 2.2E-17 4.7E-22 179.3 13.2 140 780-920 24-212 (228)
82 TIGR03410 urea_trans_UrtE urea 99.7 1.6E-17 3.6E-22 180.5 12.3 143 776-919 10-196 (230)
83 COG0411 LivG ABC-type branched 99.7 1.1E-17 2.4E-22 175.4 10.4 146 773-919 11-214 (250)
84 PRK13538 cytochrome c biogenes 99.7 2.1E-17 4.4E-22 176.4 12.7 141 776-919 11-193 (204)
85 PRK11650 ugpC glycerol-3-phosp 99.7 1.7E-17 3.6E-22 191.0 12.9 146 777-923 15-204 (356)
86 cd03296 ABC_CysA_sulfate_impor 99.7 1.6E-17 3.6E-22 181.6 12.2 142 776-918 12-200 (239)
87 TIGR03265 PhnT2 putative 2-ami 99.7 1.5E-17 3.2E-22 191.2 12.2 148 775-923 13-204 (353)
88 TIGR02314 ABC_MetN D-methionin 99.7 2.6E-17 5.6E-22 188.0 14.1 143 779-922 18-209 (343)
89 PRK13539 cytochrome c biogenes 99.7 2E-17 4.3E-22 176.9 12.1 142 776-919 12-191 (207)
90 cd03294 ABC_Pro_Gly_Bertaine T 99.7 1.6E-17 3.5E-22 184.7 11.7 144 774-918 32-224 (269)
91 cd03224 ABC_TM1139_LivF_branch 99.7 2.3E-17 5E-22 178.3 12.6 141 776-918 10-195 (222)
92 cd03246 ABCC_Protease_Secretio 99.7 2.7E-17 5.9E-22 170.8 12.6 133 779-920 15-161 (173)
93 cd03258 ABC_MetN_methionine_tr 99.7 4.6E-17 1E-21 177.3 14.9 139 780-919 19-205 (233)
94 PRK11300 livG leucine/isoleuci 99.7 2.7E-17 5.9E-22 181.6 13.3 143 776-919 15-218 (255)
95 PRK10247 putative ABC transpor 99.7 2.6E-17 5.6E-22 178.3 12.8 145 776-921 17-204 (225)
96 cd03230 ABC_DR_subfamily_A Thi 99.7 2.7E-17 5.8E-22 170.8 12.4 127 778-919 12-159 (173)
97 PRK10908 cell division protein 99.7 5.1E-17 1.1E-21 175.7 14.8 140 778-919 14-201 (222)
98 PRK09493 glnQ glutamine ABC tr 99.7 3E-17 6.5E-22 179.6 13.1 142 776-919 11-200 (240)
99 PRK11432 fbpC ferric transport 99.7 2E-17 4.4E-22 189.8 12.2 148 775-923 15-206 (351)
100 cd03231 ABC_CcmA_heme_exporter 99.7 3E-17 6.4E-22 174.7 12.7 140 776-917 10-187 (201)
101 PRK09544 znuC high-affinity zi 99.7 2.3E-17 4.9E-22 181.5 12.1 143 776-919 14-185 (251)
102 TIGR01186 proV glycine betaine 99.7 2.3E-17 5E-22 189.4 12.3 147 775-922 2-198 (363)
103 TIGR03740 galliderm_ABC gallid 99.7 2.5E-17 5.5E-22 178.1 12.0 142 776-919 10-188 (223)
104 PRK13637 cbiO cobalt transport 99.7 2.8E-17 6.1E-22 184.4 12.7 143 779-922 20-213 (287)
105 PRK13638 cbiO cobalt transport 99.7 2.6E-17 5.7E-22 183.3 12.4 142 776-919 11-200 (271)
106 cd03263 ABC_subfamily_A The AB 99.7 3.6E-17 7.8E-22 176.6 13.1 138 779-919 15-196 (220)
107 cd03217 ABC_FeS_Assembly ABC-t 99.7 3.2E-17 6.9E-22 174.3 12.3 142 776-919 10-168 (200)
108 COG3839 MalK ABC-type sugar tr 99.7 1.9E-17 4.1E-22 185.1 10.9 150 773-923 10-203 (338)
109 cd03260 ABC_PstB_phosphate_tra 99.7 5.1E-17 1.1E-21 176.3 14.0 141 776-919 10-204 (227)
110 PRK13644 cbiO cobalt transport 99.7 3.3E-17 7.1E-22 182.8 12.8 141 778-920 14-201 (274)
111 PRK10895 lipopolysaccharide AB 99.7 3.9E-17 8.5E-22 178.8 13.2 145 776-922 13-205 (241)
112 PRK13635 cbiO cobalt transport 99.7 2.9E-17 6.2E-22 183.6 12.3 140 779-919 20-205 (279)
113 PRK11000 maltose/maltodextrin 99.7 3E-17 6.6E-22 190.0 12.5 148 775-923 12-203 (369)
114 PRK13540 cytochrome c biogenes 99.7 3.8E-17 8.3E-22 173.7 12.2 144 776-922 11-194 (200)
115 PRK13647 cbiO cobalt transport 99.7 3.4E-17 7.3E-22 182.6 12.3 143 778-922 17-206 (274)
116 TIGR03258 PhnT 2-aminoethylpho 99.7 2.5E-17 5.5E-22 189.6 11.5 147 775-922 14-207 (362)
117 PRK13548 hmuV hemin importer A 99.7 3.6E-17 7.8E-22 180.9 12.3 144 775-919 11-205 (258)
118 TIGR01189 ccmA heme ABC export 99.7 4.8E-17 1E-21 172.7 12.7 139 776-916 10-188 (198)
119 PRK11153 metN DL-methionine tr 99.7 5.7E-17 1.2E-21 186.1 14.3 140 779-919 18-205 (343)
120 PRK11614 livF leucine/isoleuci 99.7 3E-17 6.4E-22 179.3 11.4 144 776-921 15-204 (237)
121 cd03264 ABC_drug_resistance_li 99.7 4.6E-17 1E-21 174.6 12.6 140 776-919 10-193 (211)
122 PRK11831 putative ABC transpor 99.7 6.2E-17 1.3E-21 180.1 14.0 143 776-919 17-208 (269)
123 TIGR01978 sufC FeS assembly AT 99.7 4.7E-17 1E-21 178.4 12.9 142 776-919 10-208 (243)
124 PRK10851 sulfate/thiosulfate t 99.7 4.2E-17 9.1E-22 187.4 12.9 146 776-922 12-205 (353)
125 PRK10253 iron-enterobactin tra 99.7 4.5E-17 9.8E-22 180.9 12.7 147 775-922 16-212 (265)
126 PRK09452 potA putrescine/sperm 99.7 3.9E-17 8.6E-22 188.6 12.6 148 775-923 23-214 (375)
127 cd03228 ABCC_MRP_Like The MRP 99.7 5E-17 1.1E-21 168.4 12.1 130 780-920 16-160 (171)
128 PRK13543 cytochrome c biogenes 99.7 4.1E-17 8.9E-22 175.4 11.5 142 776-919 21-201 (214)
129 PRK14250 phosphate ABC transpo 99.7 6.1E-17 1.3E-21 177.3 13.0 143 776-919 13-196 (241)
130 cd03229 ABC_Class3 This class 99.7 1.4E-17 3.1E-22 173.6 7.7 139 776-919 10-165 (178)
131 cd03298 ABC_ThiQ_thiamine_tran 99.7 5.7E-17 1.2E-21 173.9 12.4 135 784-919 16-193 (211)
132 cd03295 ABC_OpuCA_Osmoprotecti 99.7 6.5E-17 1.4E-21 177.2 13.1 139 779-918 14-199 (242)
133 cd03222 ABC_RNaseL_inhibitor T 99.7 3.5E-17 7.5E-22 169.6 10.3 131 770-919 4-136 (177)
134 TIGR03005 ectoine_ehuA ectoine 99.7 6.8E-17 1.5E-21 178.2 13.3 142 776-918 10-210 (252)
135 PRK13650 cbiO cobalt transport 99.7 5.4E-17 1.2E-21 181.5 12.5 142 779-921 20-207 (279)
136 cd03245 ABCC_bacteriocin_expor 99.7 6.8E-17 1.5E-21 174.4 12.8 140 779-921 17-205 (220)
137 PRK09984 phosphonate/organopho 99.7 6.8E-17 1.5E-21 179.2 13.1 145 776-921 14-220 (262)
138 cd03257 ABC_NikE_OppD_transpor 99.7 8.4E-17 1.8E-21 174.6 13.5 139 780-919 19-210 (228)
139 PRK13633 cobalt transporter AT 99.7 4.8E-17 1E-21 182.0 11.9 140 779-919 23-209 (280)
140 PRK11124 artP arginine transpo 99.7 8.5E-17 1.8E-21 176.3 13.6 142 776-919 12-205 (242)
141 PRK13652 cbiO cobalt transport 99.7 6.6E-17 1.4E-21 180.7 12.7 144 778-922 16-206 (277)
142 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.7 4.2E-17 9.2E-22 176.5 10.8 144 774-919 30-206 (224)
143 cd03297 ABC_ModC_molybdenum_tr 99.7 7.3E-17 1.6E-21 173.5 12.3 144 772-919 6-196 (214)
144 PRK10575 iron-hydroxamate tran 99.7 6.3E-17 1.4E-21 179.7 12.2 146 776-922 21-216 (265)
145 cd03213 ABCG_EPDR ABCG transpo 99.7 4.4E-17 9.5E-22 172.4 10.4 129 779-916 22-172 (194)
146 cd03232 ABC_PDR_domain2 The pl 99.7 2.6E-17 5.7E-22 173.8 8.6 130 779-917 20-170 (192)
147 TIGR02982 heterocyst_DevA ABC 99.7 9.3E-17 2E-21 173.4 13.0 143 779-922 18-209 (220)
148 TIGR03411 urea_trans_UrtD urea 99.7 9.2E-17 2E-21 176.0 13.1 141 776-919 12-206 (242)
149 PRK13632 cbiO cobalt transport 99.7 6.8E-17 1.5E-21 180.0 12.2 142 778-920 21-208 (271)
150 cd03223 ABCD_peroxisomal_ALDP 99.7 2.8E-17 6.1E-22 169.4 8.5 130 779-921 14-154 (166)
151 PRK11607 potG putrescine trans 99.7 6.5E-17 1.4E-21 187.1 12.4 147 776-923 29-219 (377)
152 PRK10619 histidine/lysine/argi 99.7 8.6E-17 1.9E-21 177.9 12.8 141 777-919 16-216 (257)
153 PRK13641 cbiO cobalt transport 99.7 9.8E-17 2.1E-21 180.1 13.4 139 779-919 20-209 (287)
154 COG4586 ABC-type uncharacteriz 99.7 9.4E-17 2E-21 169.4 12.3 143 780-923 38-226 (325)
155 COG0410 LivF ABC-type branched 99.7 9.4E-17 2E-21 167.2 12.0 150 772-922 9-205 (237)
156 PRK11231 fecE iron-dicitrate t 99.7 9.1E-17 2E-21 177.4 12.7 143 775-919 11-202 (255)
157 COG1135 AbcC ABC-type metal io 99.7 1.3E-16 2.8E-21 171.9 13.2 142 779-922 19-210 (339)
158 PRK13640 cbiO cobalt transport 99.7 8.4E-17 1.8E-21 180.2 12.3 142 779-921 20-210 (282)
159 TIGR03873 F420-0_ABC_ATP propo 99.7 8.5E-17 1.8E-21 177.8 12.1 145 776-922 11-205 (256)
160 PRK13636 cbiO cobalt transport 99.7 1.2E-16 2.6E-21 179.1 13.4 141 778-919 18-206 (283)
161 cd03247 ABCC_cytochrome_bd The 99.7 1.1E-16 2.3E-21 167.1 12.0 126 780-920 16-162 (178)
162 TIGR00968 3a0106s01 sulfate AB 99.7 1.1E-16 2.3E-21 174.9 12.6 146 776-922 10-199 (237)
163 COG1124 DppF ABC-type dipeptid 99.7 1.2E-16 2.6E-21 167.5 12.2 143 780-923 21-211 (252)
164 PRK13651 cobalt transporter AT 99.7 1.1E-16 2.5E-21 180.7 13.0 141 780-922 21-233 (305)
165 COG1118 CysA ABC-type sulfate/ 99.7 1.3E-16 2.8E-21 171.4 12.5 149 774-923 10-207 (345)
166 PRK13648 cbiO cobalt transport 99.7 9.4E-17 2E-21 178.7 11.9 140 779-919 22-207 (269)
167 PRK13646 cbiO cobalt transport 99.7 1.3E-16 2.8E-21 179.1 13.0 140 779-919 20-210 (286)
168 cd03250 ABCC_MRP_domain1 Domai 99.7 1E-16 2.2E-21 171.0 11.5 140 780-920 19-193 (204)
169 PRK14268 phosphate ABC transpo 99.7 1.4E-16 3E-21 176.3 12.9 141 776-919 22-217 (258)
170 cd03300 ABC_PotA_N PotA is an 99.7 1.5E-16 3.3E-21 173.2 12.9 141 777-918 11-194 (232)
171 PRK14242 phosphate transporter 99.7 1.7E-16 3.8E-21 175.0 13.4 141 776-919 16-212 (253)
172 PRK15056 manganese/iron transp 99.7 1.1E-16 2.3E-21 178.5 11.7 139 778-918 19-205 (272)
173 PRK10070 glycine betaine trans 99.7 8.7E-17 1.9E-21 186.7 11.3 143 776-919 38-229 (400)
174 COG1122 CbiO ABC-type cobalt t 99.7 4.6E-17 1E-21 175.4 8.2 139 779-919 17-203 (235)
175 TIGR00972 3a0107s01c2 phosphat 99.7 1.4E-16 2.9E-21 175.2 12.1 144 776-922 11-211 (247)
176 PRK13634 cbiO cobalt transport 99.7 1.7E-16 3.8E-21 178.3 13.1 140 779-919 20-210 (290)
177 TIGR03415 ABC_choXWV_ATP choli 99.7 9.1E-17 2E-21 185.3 10.9 148 774-922 32-233 (382)
178 TIGR02142 modC_ABC molybdenum 99.7 1.4E-16 3E-21 183.9 12.3 147 774-923 7-201 (354)
179 TIGR02323 CP_lyasePhnK phospho 99.7 1.7E-16 3.7E-21 175.1 12.6 143 776-919 13-213 (253)
180 PRK11701 phnK phosphonate C-P 99.7 1.3E-16 2.9E-21 176.4 11.7 143 776-919 16-216 (258)
181 PRK13541 cytochrome c biogenes 99.7 1.5E-16 3.3E-21 168.5 11.6 142 777-921 12-189 (195)
182 PRK14245 phosphate ABC transpo 99.7 2.6E-16 5.7E-21 173.3 13.7 144 776-922 13-213 (250)
183 PRK13639 cbiO cobalt transport 99.7 1.7E-16 3.8E-21 177.1 12.4 139 779-919 15-201 (275)
184 PRK13649 cbiO cobalt transport 99.7 2.1E-16 4.5E-21 177.1 13.0 139 779-919 20-209 (280)
185 PRK10938 putative molybdenum t 99.7 1.9E-16 4.2E-21 191.3 13.4 146 775-922 12-203 (490)
186 TIGR02324 CP_lyasePhnL phospho 99.7 2.6E-16 5.6E-21 170.4 12.9 142 779-922 21-217 (224)
187 PRK15093 antimicrobial peptide 99.7 2.3E-16 4.9E-21 180.4 12.9 144 778-922 19-227 (330)
188 COG4619 ABC-type uncharacteriz 99.7 5.1E-16 1.1E-20 152.5 13.4 141 777-918 14-197 (223)
189 PRK10418 nikD nickel transport 99.7 2E-16 4.4E-21 174.5 12.0 140 779-919 16-205 (254)
190 cd03215 ABC_Carb_Monos_II This 99.7 2.2E-16 4.8E-21 165.3 11.7 130 781-918 15-167 (182)
191 PRK15439 autoinducer 2 ABC tra 99.7 1.8E-16 3.9E-21 192.1 12.6 147 775-923 20-209 (510)
192 TIGR02769 nickel_nikE nickel i 99.7 4.3E-16 9.2E-21 173.1 14.5 141 778-919 23-215 (265)
193 PRK13643 cbiO cobalt transport 99.7 2.6E-16 5.7E-21 176.7 12.8 141 780-922 20-212 (288)
194 PRK11022 dppD dipeptide transp 99.7 1.9E-16 4.1E-21 180.5 11.8 143 779-922 20-222 (326)
195 TIGR01184 ntrCD nitrate transp 99.7 4.3E-16 9.3E-21 169.4 14.0 137 782-919 1-179 (230)
196 TIGR02770 nickel_nikD nickel i 99.7 2.4E-16 5.2E-21 171.4 12.0 138 781-919 1-190 (230)
197 PRK11144 modC molybdate transp 99.7 2.2E-16 4.8E-21 182.0 12.3 139 784-923 16-198 (352)
198 PRK15112 antimicrobial peptide 99.7 2.1E-16 4.6E-21 175.6 11.7 140 779-919 26-214 (267)
199 PRK03695 vitamin B12-transport 99.7 2.3E-16 5E-21 173.5 11.7 140 781-922 11-201 (248)
200 cd00267 ABC_ATPase ABC (ATP-bi 99.7 2E-16 4.4E-21 161.5 10.5 134 778-920 11-145 (157)
201 PRK10771 thiQ thiamine transpo 99.7 3.3E-16 7.2E-21 170.5 12.8 136 783-919 16-194 (232)
202 PRK10744 pstB phosphate transp 99.7 3.5E-16 7.6E-21 173.3 13.2 140 777-919 24-219 (260)
203 cd03251 ABCC_MsbA MsbA is an e 99.7 2.4E-16 5.2E-21 171.8 11.6 138 780-920 16-202 (234)
204 PRK14248 phosphate ABC transpo 99.7 3.9E-16 8.5E-21 173.7 13.5 140 776-918 31-226 (268)
205 cd03248 ABCC_TAP TAP, the Tran 99.7 3.2E-16 6.9E-21 170.0 12.4 139 779-920 27-214 (226)
206 PRK13549 xylose transporter AT 99.7 1.9E-16 4E-21 192.0 11.8 147 775-923 14-212 (506)
207 PRK13547 hmuV hemin importer A 99.7 2.3E-16 5E-21 175.4 11.6 143 776-919 11-219 (272)
208 PRK14273 phosphate ABC transpo 99.7 3.6E-16 7.7E-21 172.6 13.0 141 776-919 17-213 (254)
209 PRK10762 D-ribose transporter 99.7 2.4E-16 5.1E-21 190.9 12.6 147 775-923 13-210 (501)
210 PRK13645 cbiO cobalt transport 99.7 2.7E-16 5.8E-21 176.9 12.1 138 780-918 25-214 (289)
211 cd03252 ABCC_Hemolysin The ABC 99.7 3.1E-16 6.7E-21 171.3 12.2 139 779-920 15-202 (237)
212 PRK09580 sufC cysteine desulfu 99.7 3.8E-16 8.2E-21 171.8 12.9 142 776-919 11-209 (248)
213 PRK14247 phosphate ABC transpo 99.7 3.8E-16 8.2E-21 172.0 12.8 140 776-918 13-208 (250)
214 cd03244 ABCC_MRP_domain2 Domai 99.7 4.3E-16 9.3E-21 168.3 12.9 139 779-920 17-203 (221)
215 PRK14235 phosphate transporter 99.7 4.6E-16 1E-20 172.9 13.5 141 776-919 29-226 (267)
216 cd03254 ABCC_Glucan_exporter_l 99.7 3.8E-16 8.3E-21 169.7 12.5 139 779-920 16-203 (229)
217 PRK14237 phosphate transporter 99.7 4.2E-16 9E-21 173.3 13.1 144 776-922 30-230 (267)
218 PRK14259 phosphate ABC transpo 99.7 4.9E-16 1.1E-20 172.9 13.6 141 776-919 23-217 (269)
219 PRK09700 D-allose transporter 99.7 2.9E-16 6.4E-21 190.5 12.7 147 775-923 14-214 (510)
220 PRK13642 cbiO cobalt transport 99.7 3.3E-16 7.2E-21 175.0 12.1 140 780-920 21-206 (277)
221 PRK14275 phosphate ABC transpo 99.7 4.6E-16 1E-20 174.6 13.3 141 776-919 49-245 (286)
222 TIGR01277 thiQ thiamine ABC tr 99.7 3.5E-16 7.5E-21 168.1 11.7 138 781-919 13-193 (213)
223 PRK14241 phosphate transporter 99.7 5.2E-16 1.1E-20 171.7 13.3 144 776-922 14-215 (258)
224 cd03289 ABCC_CFTR2 The CFTR su 99.7 6.8E-16 1.5E-20 171.6 14.1 140 778-920 16-202 (275)
225 cd03237 ABC_RNaseL_inhibitor_d 99.7 4.6E-16 9.9E-21 170.5 12.5 139 780-919 13-180 (246)
226 PRK10419 nikE nickel transport 99.7 5.2E-16 1.1E-20 172.6 13.1 143 779-922 25-220 (268)
227 PRK14274 phosphate ABC transpo 99.7 6.5E-16 1.4E-20 171.1 13.7 140 777-919 23-218 (259)
228 PRK14256 phosphate ABC transpo 99.7 5.4E-16 1.2E-20 171.0 13.0 144 776-922 14-215 (252)
229 cd03234 ABCG_White The White s 99.7 3.7E-16 8E-21 169.5 11.3 142 779-922 20-212 (226)
230 TIGR03269 met_CoM_red_A2 methy 99.7 5.2E-16 1.1E-20 188.8 13.9 148 775-923 9-238 (520)
231 PRK14262 phosphate ABC transpo 99.7 6.7E-16 1.4E-20 170.1 13.3 143 776-921 13-212 (250)
232 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.7 4.4E-16 9.5E-21 170.2 11.7 140 779-921 16-204 (238)
233 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.7 1.9E-16 4.2E-21 159.2 8.2 120 777-919 11-131 (144)
234 PRK14269 phosphate ABC transpo 99.7 5.4E-16 1.2E-20 170.4 12.4 141 776-919 12-205 (246)
235 PRK14244 phosphate ABC transpo 99.6 7.4E-16 1.6E-20 169.8 13.4 141 776-919 15-212 (251)
236 PRK14251 phosphate ABC transpo 99.6 6.4E-16 1.4E-20 170.3 12.9 141 776-919 14-210 (251)
237 CHL00131 ycf16 sulfate ABC tra 99.6 5.9E-16 1.3E-20 170.7 12.5 141 777-919 18-215 (252)
238 PRK14239 phosphate transporter 99.6 7.7E-16 1.7E-20 169.8 13.3 144 776-922 15-215 (252)
239 PRK13631 cbiO cobalt transport 99.6 6.9E-16 1.5E-20 175.3 13.1 142 779-922 39-244 (320)
240 cd03299 ABC_ModC_like Archeal 99.6 7.2E-16 1.6E-20 168.2 12.5 138 781-919 14-194 (235)
241 PRK13545 tagH teichoic acids e 99.6 4E-16 8.8E-21 183.1 11.1 139 779-919 37-207 (549)
242 PRK14240 phosphate transporter 99.6 8.1E-16 1.8E-20 169.4 13.0 140 776-918 13-208 (250)
243 PRK15079 oligopeptide ABC tran 99.6 9.5E-16 2.1E-20 174.9 13.8 143 779-922 34-230 (331)
244 cd03290 ABCC_SUR1_N The SUR do 99.6 6.7E-16 1.5E-20 166.5 11.9 140 779-919 14-206 (218)
245 PRK14265 phosphate ABC transpo 99.6 8.8E-16 1.9E-20 171.3 13.2 141 776-919 30-224 (274)
246 PRK14254 phosphate ABC transpo 99.6 7.8E-16 1.7E-20 172.5 12.8 141 776-919 49-243 (285)
247 PRK10982 galactose/methyl gala 99.6 5.5E-16 1.2E-20 187.3 12.3 146 775-922 7-202 (491)
248 PRK13546 teichoic acids export 99.6 5.1E-16 1.1E-20 171.9 10.9 140 778-919 36-207 (264)
249 PRK14264 phosphate ABC transpo 99.6 1.4E-15 3E-20 172.2 14.6 161 748-919 35-263 (305)
250 PRK14253 phosphate ABC transpo 99.6 1.3E-15 2.9E-20 167.5 14.1 141 776-919 13-208 (249)
251 PRK14270 phosphate ABC transpo 99.6 1.4E-15 3E-20 167.7 14.1 141 776-919 14-210 (251)
252 PRK14267 phosphate ABC transpo 99.6 1.1E-15 2.4E-20 168.7 13.3 141 776-919 14-212 (253)
253 COG4133 CcmA ABC-type transpor 99.6 7.3E-16 1.6E-20 155.0 10.7 137 777-915 13-190 (209)
254 PRK14263 phosphate ABC transpo 99.6 1E-15 2.2E-20 169.5 13.0 145 775-922 17-216 (261)
255 cd03253 ABCC_ATM1_transporter 99.6 8.4E-16 1.8E-20 167.8 12.1 140 778-920 13-201 (236)
256 cd03236 ABC_RNaseL_inhibitor_d 99.6 9.5E-16 2.1E-20 168.8 12.5 137 780-919 15-203 (255)
257 PRK10938 putative molybdenum t 99.6 4.3E-16 9.3E-21 188.2 10.7 143 775-919 269-466 (490)
258 PRK15177 Vi polysaccharide exp 99.6 6.6E-16 1.4E-20 165.8 10.8 139 780-922 1-171 (213)
259 TIGR02633 xylG D-xylose ABC tr 99.6 5.8E-16 1.3E-20 187.5 11.6 147 775-923 10-210 (500)
260 COG4598 HisP ABC-type histidin 99.6 1.3E-15 2.8E-20 151.0 11.7 159 773-936 13-230 (256)
261 PRK14246 phosphate ABC transpo 99.6 9.7E-16 2.1E-20 169.3 12.2 145 775-922 19-220 (257)
262 PRK11308 dppF dipeptide transp 99.6 1.2E-15 2.6E-20 173.9 13.2 143 779-922 28-223 (327)
263 COG4604 CeuD ABC-type enteroch 99.6 6.5E-16 1.4E-20 155.7 9.6 147 772-919 7-200 (252)
264 PRK14255 phosphate ABC transpo 99.6 1.3E-15 2.9E-20 167.9 13.1 141 776-919 15-211 (252)
265 PRK14261 phosphate ABC transpo 99.6 1.5E-15 3.2E-20 167.6 13.3 141 776-919 16-212 (253)
266 COG4525 TauB ABC-type taurine 99.6 8E-16 1.7E-20 154.7 10.0 142 779-921 18-199 (259)
267 COG3840 ThiQ ABC-type thiamine 99.6 9.8E-16 2.1E-20 152.7 10.3 138 784-922 17-198 (231)
268 PRK14249 phosphate ABC transpo 99.6 1.5E-15 3.2E-20 167.4 13.0 141 776-919 14-210 (251)
269 PRK11288 araG L-arabinose tran 99.6 8E-16 1.7E-20 186.3 11.8 145 776-922 14-208 (501)
270 cd03233 ABC_PDR_domain1 The pl 99.6 7.6E-16 1.6E-20 164.0 10.2 142 778-922 19-188 (202)
271 PRK09473 oppD oligopeptide tra 99.6 8E-16 1.7E-20 175.5 11.0 143 779-922 29-230 (330)
272 COG0396 sufC Cysteine desulfur 99.6 5.1E-15 1.1E-19 153.6 15.7 141 779-921 17-210 (251)
273 PRK14260 phosphate ABC transpo 99.6 2.6E-15 5.7E-20 166.2 13.9 141 776-919 17-213 (259)
274 PRK14258 phosphate ABC transpo 99.6 2.5E-15 5.5E-20 166.5 13.7 142 777-919 18-215 (261)
275 PRK14238 phosphate transporter 99.6 2.3E-15 4.9E-20 167.8 13.3 141 776-919 34-230 (271)
276 PRK14271 phosphate ABC transpo 99.6 2E-15 4.3E-20 168.6 12.9 142 775-919 30-226 (276)
277 PRK14272 phosphate ABC transpo 99.6 2.3E-15 5E-20 166.0 13.1 141 776-919 14-211 (252)
278 PRK14243 phosphate transporter 99.6 2.4E-15 5.3E-20 166.9 13.4 141 776-919 20-214 (264)
279 cd03369 ABCC_NFT1 Domain 2 of 99.6 2E-15 4.3E-20 161.5 12.1 138 779-919 21-188 (207)
280 cd03291 ABCC_CFTR1 The CFTR su 99.6 2.4E-15 5.2E-20 167.8 13.0 151 761-920 39-224 (282)
281 PRK14252 phosphate ABC transpo 99.6 2.6E-15 5.6E-20 166.8 13.1 141 776-919 26-224 (265)
282 TIGR01257 rim_protein retinal- 99.6 1.7E-15 3.6E-20 201.5 13.5 147 774-923 1945-2139(2272)
283 PRK14266 phosphate ABC transpo 99.6 3.7E-15 7.9E-20 164.2 13.8 141 776-919 13-209 (250)
284 PRK13549 xylose transporter AT 99.6 1.3E-15 2.8E-20 184.6 11.2 140 778-919 274-469 (506)
285 COG4175 ProV ABC-type proline/ 99.6 3.3E-15 7.1E-20 160.7 12.5 139 780-919 42-229 (386)
286 PRK14236 phosphate transporter 99.6 3.9E-15 8.5E-20 166.0 13.7 141 776-919 35-231 (272)
287 PRK15064 ABC transporter ATP-b 99.6 2.1E-15 4.6E-20 183.8 11.9 139 775-919 10-216 (530)
288 COG1129 MglA ABC-type sugar tr 99.6 1.9E-15 4.2E-20 175.6 10.7 150 773-924 15-215 (500)
289 PRK13409 putative ATPase RIL; 99.6 2.4E-15 5.3E-20 183.7 12.1 139 780-919 353-518 (590)
290 PRK15134 microcin C ABC transp 99.6 2.6E-15 5.6E-20 183.0 12.3 140 779-919 299-490 (529)
291 PRK09700 D-allose transporter 99.6 2.6E-15 5.6E-20 182.3 12.0 137 781-919 278-473 (510)
292 PRK15134 microcin C ABC transp 99.6 2.2E-15 4.8E-20 183.6 11.5 143 779-922 22-225 (529)
293 PRK10762 D-ribose transporter 99.6 3E-15 6.4E-20 181.3 12.4 138 780-919 266-459 (501)
294 PRK15439 autoinducer 2 ABC tra 99.6 2.3E-15 5E-20 182.5 11.2 137 781-919 278-467 (510)
295 TIGR02633 xylG D-xylose ABC tr 99.6 1.7E-15 3.8E-20 183.4 10.1 140 778-919 272-467 (500)
296 TIGR03771 anch_rpt_ABC anchore 99.6 3.4E-15 7.3E-20 161.6 11.2 130 787-918 1-176 (223)
297 TIGR03269 met_CoM_red_A2 methy 99.6 4E-15 8.7E-20 181.1 13.0 140 779-919 297-492 (520)
298 PRK10636 putative ABC transpor 99.6 2.4E-15 5.2E-20 186.3 11.1 143 772-919 7-210 (638)
299 cd03288 ABCC_SUR2 The SUR doma 99.6 4.5E-15 9.7E-20 164.2 12.0 139 779-920 34-220 (257)
300 COG4181 Predicted ABC-type tra 99.6 8.2E-15 1.8E-19 144.6 11.8 145 778-924 22-216 (228)
301 PRK10261 glutathione transport 99.6 6.3E-15 1.4E-19 182.5 13.2 143 779-923 29-238 (623)
302 TIGR01257 rim_protein retinal- 99.6 4.6E-15 1E-19 197.4 12.5 143 778-923 942-1129(2272)
303 PRK11288 araG L-arabinose tran 99.6 4.5E-15 9.7E-20 179.8 11.5 138 780-919 267-460 (501)
304 PRK14257 phosphate ABC transpo 99.6 9.4E-15 2E-19 166.6 13.0 139 778-919 94-288 (329)
305 COG4559 ABC-type hemin transpo 99.6 2E-14 4.4E-19 146.8 13.7 142 776-919 11-205 (259)
306 PRK10982 galactose/methyl gala 99.6 3.9E-15 8.5E-20 179.9 10.2 139 779-919 261-455 (491)
307 COG0444 DppD ABC-type dipeptid 99.6 5.1E-15 1.1E-19 162.0 10.0 155 779-937 18-234 (316)
308 PRK10636 putative ABC transpor 99.6 5.9E-15 1.3E-19 182.9 11.7 139 775-919 321-491 (638)
309 PRK11819 putative ABC transpor 99.6 5.2E-15 1.1E-19 181.2 10.9 139 774-919 14-224 (556)
310 PRK10261 glutathione transport 99.6 1.1E-14 2.5E-19 180.2 13.8 140 779-919 337-528 (623)
311 COG4107 PhnK ABC-type phosphon 99.6 2E-14 4.3E-19 141.9 12.6 151 773-924 13-221 (258)
312 PRK13409 putative ATPase RIL; 99.6 9.7E-15 2.1E-19 178.5 12.8 143 773-919 80-275 (590)
313 cd03270 ABC_UvrA_I The excisio 99.6 8.8E-15 1.9E-19 158.5 10.9 142 778-921 7-205 (226)
314 PRK15064 ABC transporter ATP-b 99.6 9.2E-15 2E-19 178.3 12.3 139 776-919 329-499 (530)
315 PLN03211 ABC transporter G-25; 99.6 5.6E-15 1.2E-19 182.8 10.2 147 775-923 77-276 (659)
316 TIGR03719 ABC_ABC_ChvD ATP-bin 99.6 7.9E-15 1.7E-19 179.5 10.5 140 775-919 331-504 (552)
317 PRK11819 putative ABC transpor 99.5 9.6E-15 2.1E-19 178.9 10.8 140 775-919 333-506 (556)
318 PRK11147 ABC transporter ATPas 99.5 1.4E-14 3E-19 179.9 12.3 139 775-919 328-501 (635)
319 cd03278 ABC_SMC_barmotin Barmo 99.5 1.7E-14 3.7E-19 152.8 11.2 132 783-921 14-182 (197)
320 COG4674 Uncharacterized ABC-ty 99.5 1.6E-14 3.6E-19 145.5 9.9 155 774-934 13-222 (249)
321 PRK11147 ABC transporter ATPas 99.5 1.1E-14 2.5E-19 180.7 10.8 140 773-919 10-217 (635)
322 COG3845 ABC-type uncharacteriz 99.5 1.3E-14 2.8E-19 165.4 10.1 150 773-924 11-210 (501)
323 COG1134 TagH ABC-type polysacc 99.5 4.6E-14 9.9E-19 148.6 13.0 141 777-919 38-211 (249)
324 COG1123 ATPase components of v 99.5 2.6E-14 5.5E-19 167.4 12.1 154 780-937 23-235 (539)
325 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 1.7E-14 3.7E-19 176.6 10.9 139 775-919 13-222 (552)
326 COG0488 Uup ATPase components 99.5 2.5E-14 5.4E-19 170.7 11.5 141 773-919 10-214 (530)
327 PLN03073 ABC transporter F fam 99.5 2.3E-14 4.9E-19 178.4 11.4 136 778-919 521-688 (718)
328 TIGR01842 type_I_sec_PrtD type 99.5 1.4E-13 3E-18 168.5 17.8 142 778-921 330-520 (544)
329 PRK13657 cyclic beta-1,2-gluca 99.5 2.3E-13 5E-18 168.3 19.1 141 779-922 348-537 (588)
330 COG0488 Uup ATPase components 99.5 3.4E-13 7.3E-18 161.1 19.5 136 779-919 335-500 (530)
331 TIGR00954 3a01203 Peroxysomal 99.5 1.8E-13 3.8E-18 170.4 17.8 139 778-921 464-645 (659)
332 PRK10522 multidrug transporter 99.5 2.2E-13 4.8E-18 166.8 18.3 144 778-922 335-517 (547)
333 COG4161 ArtP ABC-type arginine 99.5 6.8E-14 1.5E-18 136.5 10.6 145 773-919 9-205 (242)
334 PRK10535 macrolide transporter 99.5 5.5E-14 1.2E-18 174.7 12.7 142 779-922 21-211 (648)
335 PRK11176 lipid transporter ATP 99.5 1.6E-13 3.5E-18 169.6 15.9 142 778-922 355-546 (582)
336 COG2274 SunT ABC-type bacterio 99.5 2.6E-13 5.7E-18 167.1 17.0 142 779-923 486-676 (709)
337 PLN03073 ABC transporter F fam 99.5 8.1E-14 1.7E-18 173.5 12.1 143 772-919 183-405 (718)
338 COG4608 AppF ABC-type oligopep 99.5 5.7E-14 1.2E-18 150.8 9.0 141 780-921 27-176 (268)
339 KOG0057 Mitochondrial Fe/S clu 99.5 1.1E-12 2.5E-17 150.7 20.0 145 776-923 361-554 (591)
340 TIGR02857 CydD thiol reductant 99.5 7.2E-13 1.6E-17 161.9 19.7 141 779-922 335-524 (529)
341 COG1101 PhnK ABC-type uncharac 99.5 2.8E-13 6.1E-18 138.8 13.1 140 778-918 18-212 (263)
342 TIGR02203 MsbA_lipidA lipid A 99.5 6E-13 1.3E-17 164.2 18.4 142 778-922 344-535 (571)
343 PRK10789 putative multidrug tr 99.5 7.5E-13 1.6E-17 162.8 19.1 140 778-920 327-515 (569)
344 TIGR03375 type_I_sec_LssB type 99.5 6.9E-13 1.5E-17 167.1 19.2 142 778-922 477-667 (694)
345 TIGR02204 MsbA_rel ABC transpo 99.5 8.2E-13 1.8E-17 163.1 19.3 141 779-922 353-542 (576)
346 PRK10790 putative multidrug tr 99.5 7.3E-13 1.6E-17 164.0 18.8 140 779-921 354-541 (592)
347 TIGR01192 chvA glucan exporter 99.5 5.8E-13 1.3E-17 164.2 17.6 140 779-921 348-536 (585)
348 TIGR01194 cyc_pep_trnsptr cycl 99.5 2.5E-13 5.5E-18 166.5 14.2 143 779-922 355-538 (555)
349 PRK11174 cysteine/glutathione 99.5 6.7E-13 1.4E-17 164.2 18.0 143 777-922 361-551 (588)
350 COG4778 PhnL ABC-type phosphon 99.5 1.5E-13 3.2E-18 135.5 9.5 144 779-924 24-222 (235)
351 cd03274 ABC_SMC4_euk Eukaryoti 99.5 1.5E-13 3.3E-18 147.2 10.6 140 776-923 14-198 (212)
352 PRK11160 cysteine/glutathione 99.5 1.8E-13 4E-18 168.3 12.6 141 779-922 353-541 (574)
353 TIGR00955 3a01204 The Eye Pigm 99.5 1.3E-13 2.8E-18 170.6 10.8 145 777-923 36-236 (617)
354 KOG0059 Lipid exporter ABCA1 a 99.5 1.9E-13 4.1E-18 174.7 12.5 153 781-936 580-779 (885)
355 COG4988 CydD ABC-type transpor 99.5 8.7E-13 1.9E-17 154.0 16.4 202 712-922 270-522 (559)
356 PLN03140 ABC transporter G fam 99.4 1.6E-13 3.6E-18 181.8 11.3 143 778-922 892-1088(1470)
357 TIGR03797 NHPM_micro_ABC2 NHPM 99.4 1.6E-12 3.4E-17 163.7 19.2 140 778-922 465-652 (686)
358 COG4148 ModC ABC-type molybdat 99.4 1.6E-13 3.6E-18 145.3 8.6 140 784-924 16-199 (352)
359 cd03271 ABC_UvrA_II The excisi 99.4 7.9E-13 1.7E-17 145.2 13.9 80 840-921 154-238 (261)
360 TIGR01187 potA spermidine/putr 99.4 2.4E-13 5.3E-18 155.2 10.3 126 797-923 1-170 (325)
361 TIGR03796 NHPM_micro_ABC1 NHPM 99.4 2.6E-13 5.5E-18 171.5 11.2 141 778-923 491-680 (710)
362 PF05188 MutS_II: MutS domain 99.4 1.9E-12 4.1E-17 128.7 15.1 130 217-385 1-130 (137)
363 COG4136 ABC-type uncharacteriz 99.4 2.3E-13 5.1E-18 131.4 8.1 141 777-918 13-198 (213)
364 TIGR01846 type_I_sec_HlyB type 99.4 1.5E-12 3.2E-17 164.0 17.3 142 778-922 469-659 (694)
365 COG1123 ATPase components of v 99.4 7.5E-13 1.6E-17 155.2 12.7 140 779-919 304-494 (539)
366 TIGR00956 3a01205 Pleiotropic 99.4 3.2E-13 6.8E-18 179.7 10.6 138 778-917 775-964 (1394)
367 TIGR00958 3a01208 Conjugate Tr 99.4 1.4E-12 3E-17 164.4 15.2 140 778-922 493-681 (711)
368 TIGR01193 bacteriocin_ABC ABC- 99.4 2.8E-12 6.1E-17 162.0 17.8 141 778-922 486-676 (708)
369 TIGR02868 CydC thiol reductant 99.4 9.1E-13 2E-17 161.0 12.7 134 779-915 348-529 (529)
370 PTZ00265 multidrug resistance 99.4 1.2E-12 2.6E-17 174.5 14.4 143 779-922 398-647 (1466)
371 cd03279 ABC_sbcCD SbcCD and ot 99.4 9.3E-13 2E-17 141.5 10.4 135 783-919 18-197 (213)
372 KOG0927 Predicted transporter 99.4 2.6E-12 5.7E-17 147.1 14.1 145 780-931 404-582 (614)
373 KOG0062 ATPase component of AB 99.4 1.3E-12 2.8E-17 148.8 11.4 143 771-918 85-258 (582)
374 COG4987 CydC ABC-type transpor 99.4 1.4E-12 2.9E-17 150.0 11.5 143 778-923 350-541 (573)
375 cd03272 ABC_SMC3_euk Eukaryoti 99.4 1.4E-12 3E-17 143.1 11.2 70 850-922 154-228 (243)
376 COG4618 ArpD ABC-type protease 99.4 9.7E-12 2.1E-16 141.8 18.1 143 778-923 348-540 (580)
377 PTZ00243 ABC transporter; Prov 99.4 6.8E-13 1.5E-17 178.2 9.9 143 777-921 671-848 (1560)
378 COG4138 BtuD ABC-type cobalami 99.3 7.9E-13 1.7E-17 130.9 5.8 134 782-918 15-195 (248)
379 TIGR01271 CFTR_protein cystic 99.3 1.6E-12 3.5E-17 174.4 10.2 142 779-922 439-615 (1490)
380 TIGR00956 3a01205 Pleiotropic 99.3 2.1E-12 4.6E-17 171.9 10.8 143 779-922 74-279 (1394)
381 cd03240 ABC_Rad50 The catalyti 99.3 2.4E-12 5.1E-17 137.3 9.0 133 785-921 18-189 (204)
382 PLN03140 ABC transporter G fam 99.3 1E-12 2.2E-17 174.3 7.3 144 779-923 178-407 (1470)
383 KOG0061 Transporter, ABC super 99.3 3.7E-12 8E-17 156.3 10.5 143 778-922 42-239 (613)
384 COG1132 MdlB ABC-type multidru 99.3 9.9E-12 2.1E-16 153.1 13.2 143 776-922 338-531 (567)
385 cd03276 ABC_SMC6_euk Eukaryoti 99.3 6.9E-12 1.5E-16 133.1 9.6 134 785-919 15-180 (198)
386 PLN03232 ABC transporter C fam 99.3 4.6E-11 9.9E-16 160.9 18.1 143 778-922 629-807 (1495)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.3 2.6E-11 5.7E-16 133.3 12.1 68 853-922 154-226 (247)
388 PTZ00265 multidrug resistance 99.3 1.5E-11 3.2E-16 164.2 11.9 143 779-922 1181-1426(1466)
389 TIGR00957 MRP_assoc_pro multi 99.3 1E-11 2.2E-16 167.3 10.3 142 779-922 651-829 (1522)
390 PLN03130 ABC transporter C fam 99.3 9E-11 2E-15 158.2 19.1 142 779-922 630-807 (1622)
391 PF00005 ABC_tran: ABC transpo 99.2 8.6E-12 1.9E-16 124.1 6.8 101 782-882 1-137 (137)
392 cd03273 ABC_SMC2_euk Eukaryoti 99.2 4.8E-11 1E-15 131.6 13.1 71 850-923 162-237 (251)
393 PLN03232 ABC transporter C fam 99.2 4.7E-11 1E-15 160.8 13.8 140 779-921 1249-1436(1495)
394 TIGR01271 CFTR_protein cystic 99.2 4.8E-11 1E-15 160.4 13.8 140 778-920 1231-1417(1490)
395 KOG0927 Predicted transporter 99.2 5.8E-11 1.3E-15 136.3 12.1 140 776-919 85-283 (614)
396 PLN03130 ABC transporter C fam 99.2 5.7E-11 1.2E-15 160.1 13.8 141 779-922 1252-1440(1622)
397 cd03239 ABC_SMC_head The struc 99.2 4.4E-11 9.6E-16 124.6 9.9 121 794-921 24-164 (178)
398 KOG0055 Multidrug/pheromone ex 99.2 3.9E-11 8.5E-16 150.6 10.5 140 778-921 365-554 (1228)
399 TIGR00957 MRP_assoc_pro multi 99.2 1.6E-10 3.4E-15 156.0 16.8 141 779-922 1299-1487(1522)
400 PTZ00243 ABC transporter; Prov 99.2 7.3E-11 1.6E-15 158.9 13.1 141 779-922 1323-1512(1560)
401 PF05190 MutS_IV: MutS family 99.2 3.4E-10 7.4E-15 104.6 13.5 90 611-700 1-92 (92)
402 KOG0056 Heavy metal exporter H 99.2 1.1E-10 2.3E-15 131.6 10.7 137 777-917 549-735 (790)
403 COG2401 ABC-type ATPase fused 99.1 2.1E-10 4.5E-15 127.5 11.7 141 778-919 395-572 (593)
404 KOG0058 Peptide exporter, ABC 99.1 1.1E-10 2.3E-15 139.2 10.0 142 778-922 480-670 (716)
405 TIGR00630 uvra excinuclease AB 99.1 3.4E-10 7.4E-15 143.2 14.8 79 841-921 814-897 (924)
406 PRK00635 excinuclease ABC subu 99.1 3E-10 6.6E-15 149.8 14.5 81 840-922 794-879 (1809)
407 COG4172 ABC-type uncharacteriz 99.1 2.3E-10 5.1E-15 127.0 11.3 140 778-919 299-491 (534)
408 cd03277 ABC_SMC5_euk Eukaryoti 99.1 1.7E-10 3.6E-15 123.8 9.8 65 851-916 123-193 (213)
409 PRK00349 uvrA excinuclease ABC 99.1 5.3E-10 1.2E-14 141.8 14.7 72 848-921 824-899 (943)
410 KOG0066 eIF2-interacting prote 99.1 4.4E-10 9.6E-15 124.9 11.5 129 777-918 598-764 (807)
411 COG4178 ABC-type uncharacteriz 99.1 2.7E-09 5.9E-14 127.2 18.4 143 778-923 405-582 (604)
412 COG1245 Predicted ATPase, RNas 99.1 4.4E-10 9.6E-15 126.5 10.7 132 789-921 364-522 (591)
413 COG4615 PvdE ABC-type sideroph 99.1 2E-09 4.3E-14 119.2 15.3 159 761-924 322-518 (546)
414 COG4172 ABC-type uncharacteriz 99.0 9.7E-10 2.1E-14 122.2 11.1 144 778-923 22-227 (534)
415 KOG0064 Peroxisomal long-chain 99.0 1.5E-08 3.3E-13 115.9 18.6 138 778-920 494-674 (728)
416 KOG2355 Predicted ABC-type tra 99.0 1.2E-09 2.6E-14 111.3 7.7 157 761-926 13-216 (291)
417 KOG0065 Pleiotropic drug resis 99.0 7E-10 1.5E-14 139.4 6.8 140 777-918 802-993 (1391)
418 COG1245 Predicted ATPase, RNas 98.9 4.7E-09 1E-13 118.4 12.3 133 790-924 98-282 (591)
419 KOG0055 Multidrug/pheromone ex 98.9 9.6E-09 2.1E-13 129.6 12.6 142 777-922 1001-1192(1228)
420 COG4167 SapF ABC-type antimicr 98.8 1E-08 2.2E-13 102.7 9.6 138 781-919 28-214 (267)
421 KOG0054 Multidrug resistance-a 98.8 5.5E-08 1.2E-12 125.7 17.7 155 761-919 518-707 (1381)
422 COG3910 Predicted ATPase [Gene 98.8 1.1E-08 2.4E-13 103.3 8.8 55 863-919 138-192 (233)
423 cd03241 ABC_RecN RecN ATPase i 98.8 7.6E-09 1.7E-13 115.7 7.9 65 855-922 171-240 (276)
424 KOG0060 Long-chain acyl-CoA tr 98.8 1.1E-07 2.4E-12 110.6 16.0 138 778-920 447-632 (659)
425 COG1129 MglA ABC-type sugar tr 98.7 4.2E-08 9.1E-13 115.0 10.8 141 781-923 274-470 (500)
426 COG5265 ATM1 ABC-type transpor 98.7 6E-08 1.3E-12 109.0 10.7 139 777-918 274-461 (497)
427 COG0178 UvrA Excinuclease ATPa 98.7 1.9E-07 4.2E-12 112.4 14.3 68 853-922 821-892 (935)
428 COG4170 SapD ABC-type antimicr 98.7 5.4E-08 1.2E-12 99.5 8.2 156 766-923 5-228 (330)
429 PRK00635 excinuclease ABC subu 98.6 1.3E-07 2.8E-12 125.4 12.0 68 853-922 1698-1769(1809)
430 KOG0066 eIF2-interacting prote 98.6 6.9E-08 1.5E-12 107.8 5.7 137 778-919 276-473 (807)
431 KOG0062 ATPase component of AB 98.5 2.8E-07 6E-12 106.1 9.8 149 767-920 358-544 (582)
432 PF02463 SMC_N: RecF/RecN/SMC 98.5 5.3E-07 1.2E-11 97.4 11.0 51 869-922 156-206 (220)
433 KOG0054 Multidrug resistance-a 98.5 3.3E-07 7.2E-12 118.6 10.8 138 778-918 1152-1337(1381)
434 TIGR02858 spore_III_AA stage I 98.5 3.4E-07 7.4E-12 101.4 8.9 109 793-921 112-235 (270)
435 PRK08533 flagellar accessory p 98.4 1.4E-06 3E-11 94.8 11.7 125 788-916 20-163 (230)
436 PF13304 AAA_21: AAA domain; P 98.3 1.5E-06 3.2E-11 94.7 7.8 61 856-918 238-302 (303)
437 cd03242 ABC_RecF RecF is a rec 98.2 5.3E-06 1.2E-10 92.6 9.7 42 869-916 208-249 (270)
438 cd01120 RecA-like_NTPases RecA 98.1 1.5E-05 3.3E-10 80.8 10.4 122 794-916 1-138 (165)
439 cd01124 KaiC KaiC is a circadi 98.0 1.7E-05 3.7E-10 83.1 9.8 121 794-917 1-142 (187)
440 PRK06067 flagellar accessory p 98.0 3.2E-05 6.9E-10 84.4 12.2 126 788-916 21-166 (234)
441 PRK13695 putative NTPase; Prov 98.0 1.6E-05 3.4E-10 82.7 8.9 51 869-923 94-144 (174)
442 smart00382 AAA ATPases associa 98.0 4.4E-05 9.6E-10 74.6 10.4 116 792-914 2-125 (148)
443 cd00820 PEPCK_HprK Phosphoenol 97.9 7.2E-06 1.6E-10 77.4 2.9 35 779-813 2-36 (107)
444 TIGR02788 VirB11 P-type DNA tr 97.9 2E-05 4.4E-10 89.6 6.5 116 786-923 138-261 (308)
445 TIGR00630 uvra excinuclease AB 97.8 2.8E-05 6.1E-10 99.3 8.1 83 839-923 471-557 (924)
446 KOG0063 RNAse L inhibitor, ABC 97.8 5.8E-05 1.3E-09 85.3 9.0 130 791-921 366-523 (592)
447 PRK00349 uvrA excinuclease ABC 97.8 3.6E-05 7.7E-10 98.6 7.9 84 838-923 472-559 (943)
448 cd01131 PilT Pilus retraction 97.8 5.5E-05 1.2E-09 80.4 7.9 114 794-923 3-117 (198)
449 PRK09183 transposase/IS protei 97.7 0.00011 2.4E-09 81.4 9.8 111 782-914 93-205 (259)
450 KOG0065 Pleiotropic drug resis 97.7 6.3E-05 1.4E-09 96.0 6.8 133 779-915 128-321 (1391)
451 PRK07721 fliI flagellum-specif 97.6 0.00026 5.6E-09 83.7 11.1 132 778-916 145-317 (438)
452 PRK06995 flhF flagellar biosyn 97.6 0.00038 8.2E-09 82.9 12.5 173 788-994 252-435 (484)
453 PRK04296 thymidine kinase; Pro 97.6 0.00028 6E-09 74.5 9.7 112 792-914 2-115 (190)
454 COG3845 ABC-type uncharacteriz 97.6 0.00019 4E-09 83.4 8.4 143 780-924 272-473 (501)
455 PRK14722 flhF flagellar biosyn 97.6 0.00017 3.7E-09 83.2 8.2 96 781-883 126-227 (374)
456 PF13555 AAA_29: P-loop contai 97.5 8.5E-05 1.8E-09 62.9 3.2 31 785-816 17-47 (62)
457 cd00009 AAA The AAA+ (ATPases 97.5 0.00056 1.2E-08 67.4 9.7 110 791-916 18-131 (151)
458 PRK14721 flhF flagellar biosyn 97.5 0.001 2.2E-08 78.0 12.9 171 790-994 189-370 (420)
459 PRK14723 flhF flagellar biosyn 97.4 0.0004 8.7E-09 86.3 9.7 99 781-886 174-279 (767)
460 PRK06793 fliI flagellum-specif 97.4 0.00026 5.7E-09 83.0 7.5 131 781-919 146-290 (432)
461 TIGR03238 dnd_assoc_3 dnd syst 97.4 8.5E-05 1.8E-09 86.9 2.5 32 779-810 19-50 (504)
462 KOG0063 RNAse L inhibitor, ABC 97.3 0.00038 8.2E-09 79.0 6.5 66 857-924 217-282 (592)
463 PRK10869 recombination and rep 97.3 0.0021 4.5E-08 78.8 13.6 98 870-990 451-551 (553)
464 PF00004 AAA: ATPase family as 97.3 0.00083 1.8E-08 65.7 8.0 104 795-917 1-114 (132)
465 TIGR03015 pepcterm_ATPase puta 97.3 0.00091 2E-08 74.4 9.3 35 781-815 31-66 (269)
466 PRK06731 flhF flagellar biosyn 97.3 0.0047 1E-07 68.6 14.6 128 791-925 74-209 (270)
467 TIGR01420 pilT_fam pilus retra 97.2 0.00061 1.3E-08 78.7 7.8 114 790-919 120-234 (343)
468 PRK06526 transposase; Provisio 97.2 0.001 2.3E-08 73.4 9.3 105 790-915 96-201 (254)
469 cd01125 repA Hexameric Replica 97.2 0.0013 2.8E-08 72.1 10.0 46 869-916 109-160 (239)
470 cd01130 VirB11-like_ATPase Typ 97.2 0.00018 3.9E-09 75.7 2.8 32 785-816 18-49 (186)
471 TIGR03881 KaiC_arch_4 KaiC dom 97.2 0.0038 8.3E-08 67.8 13.2 128 788-916 16-167 (229)
472 PRK06893 DNA replication initi 97.2 0.0013 2.7E-08 71.7 9.1 93 793-915 40-134 (229)
473 TIGR00634 recN DNA repair prot 97.2 0.0037 8E-08 77.2 13.8 97 871-990 462-561 (563)
474 cd01121 Sms Sms (bacterial rad 97.2 0.0021 4.5E-08 74.8 10.9 122 788-915 78-210 (372)
475 cd01123 Rad51_DMC1_radA Rad51_ 97.2 0.0032 6.9E-08 68.6 11.9 30 788-817 15-44 (235)
476 PLN03210 Resistant to P. syrin 97.1 0.00083 1.8E-08 89.8 8.6 30 786-815 201-230 (1153)
477 PRK12727 flagellar biosynthesi 97.1 0.0024 5.2E-08 76.2 11.3 87 790-883 348-440 (559)
478 PTZ00454 26S protease regulato 97.1 0.0018 3.9E-08 76.1 10.1 25 791-815 178-202 (398)
479 PRK07952 DNA replication prote 97.1 0.0018 3.9E-08 70.9 9.4 104 794-914 101-204 (244)
480 PRK06921 hypothetical protein; 97.1 0.0028 6E-08 70.6 11.0 101 792-914 117-224 (266)
481 PRK11889 flhF flagellar biosyn 97.1 0.009 1.9E-07 68.9 14.7 89 792-886 241-335 (436)
482 TIGR00416 sms DNA repair prote 97.1 0.0035 7.6E-08 75.0 11.8 123 788-915 90-222 (454)
483 PRK14088 dnaA chromosomal repl 97.0 0.0028 6E-08 75.7 10.9 105 794-917 132-240 (440)
484 cd01122 GP4d_helicase GP4d_hel 97.0 0.003 6.6E-08 70.5 10.5 36 781-816 19-54 (271)
485 PRK11823 DNA repair protein Ra 97.0 0.0031 6.7E-08 75.4 10.7 121 788-914 76-207 (446)
486 cd01393 recA_like RecA is a b 97.0 0.0035 7.5E-08 67.9 10.1 31 788-818 15-45 (226)
487 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0071 1.5E-07 65.5 12.5 124 788-915 12-154 (224)
488 PRK05703 flhF flagellar biosyn 97.0 0.0036 7.7E-08 74.3 10.9 128 791-925 220-355 (424)
489 TIGR02237 recomb_radB DNA repa 97.0 0.0061 1.3E-07 65.2 11.9 42 788-829 8-50 (209)
490 COG3854 SpoIIIAA ncharacterize 97.0 0.0034 7.4E-08 66.2 9.2 112 792-922 136-260 (308)
491 cd01128 rho_factor Transcripti 96.9 0.0013 2.8E-08 72.2 6.2 33 784-816 8-40 (249)
492 PF13481 AAA_25: AAA domain; P 96.9 0.0042 9.1E-08 65.4 9.7 28 790-817 30-57 (193)
493 PRK08181 transposase; Validate 96.9 0.0031 6.8E-08 70.1 8.7 106 790-915 104-209 (269)
494 TIGR00618 sbcc exonuclease Sbc 96.9 0.0015 3.3E-08 86.4 7.1 68 850-919 946-1024(1042)
495 PRK12377 putative replication 96.8 0.0048 1E-07 67.8 9.7 104 793-914 102-205 (248)
496 TIGR00767 rho transcription te 96.8 0.0023 5.1E-08 73.9 7.2 33 784-816 160-192 (415)
497 TIGR03499 FlhF flagellar biosy 96.8 0.003 6.6E-08 71.0 7.8 85 790-881 192-282 (282)
498 PRK03918 chromosome segregatio 96.8 0.0027 5.9E-08 83.0 8.5 51 869-921 810-860 (880)
499 PF13173 AAA_14: AAA domain 96.8 0.0058 1.3E-07 60.1 8.7 99 792-918 2-102 (128)
500 PRK12723 flagellar biosynthesi 96.8 0.022 4.7E-07 66.6 14.8 86 792-884 174-267 (388)
No 1
>KOG0218 consensus Mismatch repair MSH3 [Replication, recombination and repair]
Probab=100.00 E-value=5.1e-162 Score=1362.79 Aligned_cols=866 Identities=45% Similarity=0.693 Sum_probs=751.8
Q ss_pred CCCCCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCCCceeccccccChHHHHHHHHHcCCEEE
Q 001405 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVG 165 (1083)
Q Consensus 86 ~~~~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~~~~~aG~P~~~l~~~~~~Lv~~GykVa 165 (1083)
..+|||++|||.++|.+|+|+||+++|||.|+|||+||++|||+|||+++.++||+.|+||.++++.|++|||++|||||
T Consensus 159 ks~yTPLeqQ~~elK~~h~d~VL~ievGYkyRfFgeDAeiasrvLgIych~dhnFmtaS~P~~Rl~vHleRLv~~g~KVa 238 (1070)
T KOG0218|consen 159 KSKYTPLEQQVKELKMHHRDKVLVIEVGYKYRFFGEDAEIASRVLGIYCHNDHNFMTASFPDVRLNVHLERLVHHGLKVA 238 (1070)
T ss_pred ccccCcHHHHHHHHHhhCCceEEEEEecceEEeecccHHHHHHhhceEEEeccceeeccCCcchhhHHHHHHHhcCceEE
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchHHhcCCCCCCCCeeecceeecccceeecccc-cCCCCCCCCCCCceEEEEEeecCCCcccccCccCCCccce
Q 001405 166 VVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAED-VGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVR 244 (1083)
Q Consensus 166 iveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~-l~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~~~~~~~~ 244 (1083)
||+||||++.|++|.+++++|.|+|++|||+||+.++.. +-..+++.+..++|++|+.++..++. .. .+.++
T Consensus 239 VVkQtETAAiKs~gasRsslF~RklsavyTKaTl~eds~~~~r~e~~~~~~ssfllcv~dn~~ksk----~k---sg~v~ 311 (1070)
T KOG0218|consen 239 VVKQTETAAIKSHGASRSSLFERKLSAVYTKATLGEDSTFVLRGERILGDTSSFLLCVRDNVHKSK----EK---SGVVK 311 (1070)
T ss_pred EEeehhhHHHHhcCCcccchHHHHHHHHhhhhhhccccccccchhhhcCCcceEEEEEehhhhhhh----hh---cCceE
Confidence 999999999999998889999999999999999986532 21224555678999999997543311 11 24679
Q ss_pred EEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCccccccchhHH
Q 001405 245 LGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALA 324 (1083)
Q Consensus 245 iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F~~~~~~~ 324 (1083)
||+..|+++||++++++|.|+..+++|++.|..++|.|+|++.+++.++.+++.+ .+++++.....+|+.++++.
T Consensus 312 vgligVqlstGevVydeFqdnf~rseLqtrisslqP~ElLl~~~ls~qt~all~~-----~~Vsve~~~~rv~r~~naV~ 386 (1070)
T KOG0218|consen 312 VGLIGVQLSTGEVVYDEFQDNFARSELQTRISSLQPIELLLNTDLSPQTVALLFK-----DNVSVELIHKRVYRLENAVV 386 (1070)
T ss_pred EEEEEEecCCCcEehHhhhhhHHHHHHHHHHhccCcceeecCCCCcHHHHHHHHh-----cccchhhhhhhhhhchhHHH
Confidence 9999999999999999999999999999999999999999999999999988875 25666666666677666555
Q ss_pred HHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHH-HHHHHHHHHHhccchhhccCCCceecCCCCeE
Q 001405 325 EVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQA-LALTIRHLKQFGLERIMCLGASFRSLSGSMEM 403 (1083)
Q Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~A-l~all~YL~~~~~~~~l~~~~~~~~~~~~~~M 403 (1083)
...++......+- ...+.+++.. .-+..+++++.+.+.| +++++.||+++++++++..++-..+|....+|
T Consensus 387 q~ikla~e~~q~f--~~~k~~l~gs------~ii~li~nl~~psvic~la~~is~lkefnlE~~l~~psf~s~~ss~e~M 458 (1070)
T KOG0218|consen 387 QAIKLANEKIQNF--EDDKEMLEGS------EIICLIMNLSHPSVICLLAKLISHLKEFNLEQVLLIPSFYSPFSSKEHM 458 (1070)
T ss_pred HHHHHHHHHHhhh--hhhhhhhhhh------hhhhhhhcCCCchHHHHHHHHHHHHHHhchHHheecccccCccccccee
Confidence 4444432211100 0011111111 1234577888665555 99999999999999988776333466666779
Q ss_pred EeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccc
Q 001405 404 TLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQ 483 (1083)
Q Consensus 404 ~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~ 483 (1083)
.|+++|+++||||.|++||+.+|||||+||||.|.+|.|+||+|+++||+|...|++|+|||+++..+.
T Consensus 459 tls~ntLq~Leif~nqtd~~~kGSLfwvldhT~TsfG~RmLr~WvtkPLvd~~~I~eRLDAVeeitshs----------- 527 (1070)
T KOG0218|consen 459 TLSPNTLQSLEIFTNQTDGSEKGSLFWVLDHTRTSFGLRMLREWVTKPLVDVHQIEERLDAVEEITSHS----------- 527 (1070)
T ss_pred eechhhhhceeeeeecCCCCcccceEEEeccchhHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcc-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999994321
Q ss_pred cCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCCh-hHHHHHHHHHHHHHHHHHHHhhcccc-hhhhhh
Q 001405 484 HDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATP-SEFIAVMQAILYAGKQLQQLHIDGEY-REKVTS 561 (1083)
Q Consensus 484 ~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~-~d~~~l~~~l~~~~~~l~~l~~~~~~-~~~~~~ 561 (1083)
+....+++++..|.+.|||+|.|+||++++++| ++|..+++++..+...++.+....+. ......
T Consensus 528 -------------snS~vf~si~~~l~rlpDl~rgL~rIy~~tCtp~~eff~vlk~iy~a~s~fq~~~~~~~~~~~s~~~ 594 (1070)
T KOG0218|consen 528 -------------SNSIVFESINQMLNRLPDLLRGLNRIYYGTCTPRKEFFFVLKQIYSAVSHFQMHQSYLEHFKSSDGR 594 (1070)
T ss_pred -------------cchHHHHHHHHHHHhCcHhHhhHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 111478899999999999999999999999999 89999999999888888765322211 112233
Q ss_pred chhhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHH------HHHHHHHHH
Q 001405 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSA------KEELDSLIN 635 (1083)
Q Consensus 562 ~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~------~~~l~~~l~ 635 (1083)
...+|+||++++..++.+....++..++.++|..++..|+..+.+.--.+ +|.+++.++.+..+ ...++..++
T Consensus 595 s~~qS~LLrrlisel~~p~~~s~~~hfL~mln~~aa~~gnk~d~fkd~sn-fpl~~e~~di~~virE~~ms~~~~~~hLa 673 (1070)
T KOG0218|consen 595 SGKQSPLLRRLISELNEPLSTSQLPHFLTMLNVSAAMEGNKDDQFKDFSN-FPLYDESEDIIKVIRESEMSRSQLKEHLA 673 (1070)
T ss_pred chhccHHHHHHHHHhcCccccccHHHHHHHhhHHHHhhCChHHhhhhhcc-CcchhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999998877777788899999999999988887666654333 56666555433333 234566999
Q ss_pred HHHHHhCCCcceeeEecCceEEEEcccC--CCCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001405 636 MCRKQLGMRNLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFL 713 (1083)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~iev~~~--~~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~ 713 (1083)
++|+.++.|+++|..++|..|+|||+.. .++|.+|+++++++...||+||++.++..++..+++.+...+...|+.|+
T Consensus 674 eiRk~Lk~pnlef~~vsgv~flIEvkns~~kkiP~dWiKvnsTk~vsRfhtP~iq~~l~eL~~~~e~L~i~sea~~~sFL 753 (1070)
T KOG0218|consen 674 EIRKYLKRPNLEFRQVSGVDFLIEVKNSQIKKIPDDWIKVNSTKMVSRFHTPRIQKLLQELEYYKELLIIESEAQYKSFL 753 (1070)
T ss_pred HHHHHhcCCCceeEEecCeeEEEEecccccccCCccceeeccceeeeecCCHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999999999999999999954 67999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCce
Q 001405 714 KEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREY 793 (1083)
Q Consensus 714 ~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~ 793 (1083)
+.|..||..|+.+...+|.+||++|||..|.+.+||||+|+++. ..|.|++||||+++...++.|||||+.++.+.++
T Consensus 754 ~kiSehYtelrkat~~LatlDCi~SlA~~s~n~nYvRPtfvd~~--~eI~ikngRhPvIe~Ll~d~fVPNdi~ls~eger 831 (1070)
T KOG0218|consen 754 NKISEHYTELRKATLNLATLDCILSLAATSCNVNYVRPTFVDGQ--QEIIIKNGRHPVIESLLVDYFVPNDIMLSPEGER 831 (1070)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccCcccccch--hhhhhhcCCCchHHHHhhhccCCCcceecCCCce
Confidence 99999999999999999999999999999999999999999864 3799999999999988888999999999999999
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCc
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS 873 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~s 873 (1083)
|.+||||||||||.|+||+|++.+|||+|+||||+.+.++++|.+|+|||+.|++..|.|||+.||..+..|++.++..+
T Consensus 832 c~IITGPNMGGKSsyIrQvALitIMAQiGsfVPAeea~l~IfdgvltRmGAsDnI~~grSTFm~Emldt~eil~kat~~S 911 (1070)
T KOG0218|consen 832 CNIITGPNMGGKSSYIRQVALITIMAQIGSFVPAEEARLSIFDGVLTRMGASDNIINGRSTFMVEMLDTLEILKKATKRS 911 (1070)
T ss_pred EEEEeCCCCCCchHHHHHHHHHHHHHHhcCccchHHhhhhHHhhHHHhhccccccccchhHHHHHHHHHHHHHHhcccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCce
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDV 953 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1083)
||||||.||||+++||.+|++++++|+.+..+|.+||+|||+.++++...||+.|++|||+|+.. ..+..+| .+.+
T Consensus 912 lvilDElGRGTsThDGiAIsYAtL~yf~~~~k~l~LFvTHfP~l~eie~~f~gqv~nyHmgyl~s-edk~~~d---~dsV 987 (1070)
T KOG0218|consen 912 LVILDELGRGTSTHDGIAISYATLKYFSELSKCLILFVTHFPMLGEIESGFPGQVRNYHMGYLES-EDKTGED---WDSV 987 (1070)
T ss_pred hhhhHhhcCCCccccchhHHHHHHHHHHHhhceeEEeeecCcchhhhhcCCCccccceeeeeeee-ccccCCC---chhh
Confidence 99999999999999999999999999998789999999999999999999999999999999983 3333344 6889
Q ss_pred eeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhhhhh
Q 001405 954 TYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQ 1002 (1083)
Q Consensus 954 ~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~~~~~~~ 1002 (1083)
+|+|||++|.|.+|||++||++|++|.+||+||-.++++++++.....+
T Consensus 988 tfLYklvrGlasrSyGlnVAklA~ip~sii~rA~siSeeleke~rn~rk 1036 (1070)
T KOG0218|consen 988 TFLYKLVRGLASRSYGLNVAKLARIPKSIINRAFSISEELEKESRNERK 1036 (1070)
T ss_pred hhHHHHhhhhhhccccccHHHHhCCCHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999999999999999999999999999998876554
No 2
>TIGR01070 mutS1 DNA mismatch repair protein MutS.
Probab=100.00 E-value=3.1e-145 Score=1352.02 Aligned_cols=777 Identities=31% Similarity=0.467 Sum_probs=668.0
Q ss_pred CCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCC-----CceeccccccChHHHHHHHHHcCCE
Q 001405 89 YTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH-----NFMTASIPTFRLNVHVRRLVNAGFK 163 (1083)
Q Consensus 89 ~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~-----~~~~aG~P~~~l~~~~~~Lv~~Gyk 163 (1083)
+||||+|||+||++|||+||||||||||||||+||.+||++|||+++.++ ++||||||+|+++.|++|||++|||
T Consensus 1 ~TPm~~Qy~~iK~~~~D~iLffr~GdFYElf~eDA~~~a~~L~i~lt~r~~~~~~~~pm~GvP~ha~~~yl~kLv~~G~k 80 (840)
T TIGR01070 1 LTPMMQQYLKLKAEHPDALLFFRMGDFYELFYEDAKKAAQLLDISLTSRGQSADEPIPMAGIPYHAVEAYLEKLVKQGES 80 (840)
T ss_pred CCHHHHHHHHHHHhCCCEEEEEEcCCEEEEehhhHHHHHHHhCeEEeecCCCCCCCCCcccCCHHHHHHHHHHHHHCCCE
Confidence 69999999999999999999999999999999999999999999987653 5999999999999999999999999
Q ss_pred EEEEecccchHHhcCCCCCCCCeeecceeecccceeecccccCCCCCCCCCCCceEEEEEeecCCCcccccCccCCCccc
Q 001405 164 VGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDV 243 (1083)
Q Consensus 164 VaiveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~l~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~~~~~~~ 243 (1083)
||||||+|+|+.. +|+|+|+|||||||||+++++++. +.++|||+||.... .
T Consensus 81 Vai~eQ~e~~~~~------kg~v~Rev~ri~TpGT~~~~~~l~------~~~~nyl~ai~~~~----------------~ 132 (840)
T TIGR01070 81 VAICEQIEDPKTA------KGPVEREVVQLITPGTVSDEALLP------ERQDNLLAAIAQES----------------N 132 (840)
T ss_pred EEEEEecCCchhc------CCceeeEEEEEECCCccccccccc------CCCCceEEEEEeCC----------------C
Confidence 9999999998632 379999999999999999987764 35689999996321 1
Q ss_pred eEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCccccccchhH
Q 001405 244 RLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGAL 323 (1083)
Q Consensus 244 ~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F~~~~~~ 323 (1083)
.+|+||+|+|||+|++++|.|+ +.|.+.|.+++|+|||++...+......+. .|+...+.
T Consensus 133 ~~gla~~D~sTG~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~~~~~~~~-----------------~f~~~~~~ 192 (840)
T TIGR01070 133 GFGLATLDLTTGEFKVTELADK---ETLYAELQRLNPAEVLLAEDLSEMEAIELR-----------------EFRKDTAV 192 (840)
T ss_pred eEEEEEEEccccEEEEEEecCH---HHHHHHHhccCCeEEEEcCCCChHHHHHhH-----------------hcchhHHH
Confidence 5999999999999999999874 358899999999999998765443221110 24434445
Q ss_pred HHHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHHHHHHHHHHHhccchhhccCCCceecCCCCeE
Q 001405 324 AEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEM 403 (1083)
Q Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al~all~YL~~~~~~~~l~~~~~~~~~~~~~~M 403 (1083)
..+..+|...+... . ++ ...+.+++|+|++++||+.++.... .....++.|..+++|
T Consensus 193 ~~l~~~f~~~~l~~------------------~---~~-~~~~~~~~a~g~ll~Yl~~~~~~~~-~~~~~~~~~~~~~~m 249 (840)
T TIGR01070 193 MSLEAQFGTEDLGG------------------L---GL-RNAPLGLTAAGCLLQYAKRTQRTAL-PHLQPVRLYELQDFM 249 (840)
T ss_pred HHHHHhcCccchhh------------------c---CC-CCCHHHHHHHHHHHHHHHHhChhhh-hhCCCcEEECCCCEE
Confidence 55555554311110 0 11 1135688999999999999876543 333567888899999
Q ss_pred EeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccc
Q 001405 404 TLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQ 483 (1083)
Q Consensus 404 ~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~ 483 (1083)
.||++|++||||++|.++ +.+||||++||||+|+||+||||+||++||+|++.|++|||+|++|.++.
T Consensus 250 ~lD~~t~~~LEl~~~~~~-~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~Rld~Ve~l~~~~----------- 317 (840)
T TIGR01070 250 QLDAATRRNLELTENLRG-GKQNTLFSVLDETKTAMGSRLLKRWLHRPLRDREVLEARQDTVEVLLRHF----------- 317 (840)
T ss_pred EeCHHHHHhccCCccCCC-CCCCcHHHHHhhcCCHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHhCH-----------
Confidence 999999999999998774 47899999999999999999999999999999999999999999998642
Q ss_pred cCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhhch
Q 001405 484 HDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKT 563 (1083)
Q Consensus 484 ~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~ 563 (1083)
.+...++..|++++|+||+++|+..++++|+|++.+.+.+..+ ..+.++. . .
T Consensus 318 ----------------~l~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~-~~l~~~l-~----------~ 369 (840)
T TIGR01070 318 ----------------FLREGLRPLLKEVGDLERLAARVALGNARPRDLARLRTSLEQL-PELRALL-E----------E 369 (840)
T ss_pred ----------------HHHHHHHHHhccCcCHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHH-H----------h
Confidence 4567788999999999999999999999999999998887543 3444431 0 0
Q ss_pred hhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Q 001405 564 LHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGM 643 (1083)
Q Consensus 564 ~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~ 643 (1083)
..++++..+...... ..+....+...|+.+.... ..+.+.+++|++++||++|+.+++.++++.++..++++.+++
T Consensus 370 ~~~~~l~~l~~~l~~--~~~l~~~i~~~i~~~~~~~--~~~~~~I~~g~~~~Ld~lr~~~~~~~~~l~~l~~~~~~~~~i 445 (840)
T TIGR01070 370 LEGPTLQALAAQIDD--FSELLELLEAALIENPPLV--VRDGGLIREGYDEELDELRAASREGTDYLARLEARERERTGI 445 (840)
T ss_pred cCcHHHHHHHHhccc--HHHHHHHHHHHHhcCCccc--cccCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 113445555443321 1111222333344332211 234567899999999999999999999999999999999999
Q ss_pred CcceeeEecCceEEEEcccCC--CCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 001405 644 RNLEFMSVSGITHLIELPANF--KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYA 721 (1083)
Q Consensus 644 ~~~~~~~~~~~~~~iev~~~~--~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 721 (1083)
+++++.++...+|+|+|+.+. ++|+.|+..+++++..||+++++.++++++..+++++...+.+++.++.+.+.++.+
T Consensus 446 ~~lk~~~~~~~gy~iev~~~~~~~vp~~~i~~~s~~~~~rf~tpel~~l~~~l~~~~~~~~~~e~~i~~~L~~~i~~~~~ 525 (840)
T TIGR01070 446 PTLKVGYNAVFGYYIEVTRGQLHLVPAHYRRRQTLKNAERYITPELKEKEDKVLEAEGKILALEKELFEELRELLKKYLE 525 (840)
T ss_pred CceEEEEecCceEEEEEehhhhhcCCcceEEEEeccCceEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988888889999999763 599999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCC
Q 001405 722 EFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPN 801 (1083)
Q Consensus 722 ~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpN 801 (1083)
.|..+++.+++|||++|+|.+|...+||||.|+++. .+.|++||||+++...+..|||||+.++ +.+++++|||||
T Consensus 526 ~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~---~i~i~~~RHP~le~~~~~~~VpNdi~l~-~~~~~~iITGPN 601 (840)
T TIGR01070 526 ALQEAARALAELDVLANLAEVAETLHYTRPRFGDDP---QLRIREGRHPVVEQVLRTPFVPNDLEMA-HNRRMLLITGPN 601 (840)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcCceecCCC---cEEEEeeECHHHHhccCCCeEeeeeecC-CCccEEEEECCC
Confidence 999999999999999999999999999999998765 7999999999998755578999999998 446799999999
Q ss_pred CCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCC
Q 001405 802 MGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELG 881 (1083)
Q Consensus 802 gsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~ 881 (1083)
|||||||||++|++++|||+|+||||..+.++++|+||+|+|+.|++..+.||||.||.+++.|++.+++++||||||+|
T Consensus 602 mgGKSt~lrqvali~imAq~G~~VPA~~a~i~~~D~Iftrig~~d~i~~g~STF~~Em~e~a~IL~~at~~sLvllDE~G 681 (840)
T TIGR01070 602 MGGKSTYMRQTALIALLAQIGSFVPAESAELPLFDRIFTRIGASDDLASGRSTFMVEMTEAANILHNATENSLVLFDEIG 681 (840)
T ss_pred CCCchHHHHHHHHHHHHHhcCCCccchheEeccccEEEEecCcccchhcCcchHHHHHHHHHHHHhhCCCCEEEEEccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecC
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVP 961 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~ 961 (1083)
+|||+.+|.+|+++++++|.+..+|.+||+|||+++..+.+.+|+ |.|+||++... ++.++|+|+|.+
T Consensus 682 rGT~~~dg~aia~ai~e~l~~~~~~~~~~~TH~~eL~~l~~~~~~-v~n~~~~~~~~-----------~~~l~flYkl~~ 749 (840)
T TIGR01070 682 RGTSTYDGLALAWAIAEYLHEHIRAKTLFATHYFELTALEESLPG-LKNVHVAALEH-----------NGTIVFLHQVLP 749 (840)
T ss_pred CCCChhHHHHHHHHHHHHHHhcCCCEEEEEcCchHHHHHhhhCCC-eEEEEEEEEEE-----------CCcEEEEEEECC
Confidence 999999999999999999987578999999999999999988997 99999998651 568999999999
Q ss_pred CCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 001405 962 GVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAE 996 (1083)
Q Consensus 962 G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~ 996 (1083)
|++++||||+||++||+|++||+||++++.+++..
T Consensus 750 G~~~~Sygi~VA~laGlP~~VI~rA~~il~~le~~ 784 (840)
T TIGR01070 750 GPASKSYGLAVAALAGLPKEVIARARQILTQLEAR 784 (840)
T ss_pred CCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999854
No 3
>COG0249 MutS Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.7e-145 Score=1334.08 Aligned_cols=796 Identities=34% Similarity=0.510 Sum_probs=691.1
Q ss_pred CCCCCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCCCceeccccccChHHHHHHHHHcCCEEE
Q 001405 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVG 165 (1083)
Q Consensus 86 ~~~~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~~~~~aG~P~~~l~~~~~~Lv~~GykVa 165 (1083)
+.++||||||||+||++|||++||||||||||+|++||.++|++|+|++|.++++||||||+|+++.|+.+||++|||||
T Consensus 3 ~~~~tP~m~qy~~ik~~~~d~llffr~GdfYelf~~DA~~~s~~l~itlT~r~~~pm~gvP~h~~~~yl~~li~~g~kVA 82 (843)
T COG0249 3 KAKLTPMMQQYLEIKAQYPDTLLFFRMGDFYELFFEDAKIAARLLDITLTKRGNIPMAGVPYHALDYYLAKLIELGYKVA 82 (843)
T ss_pred cccCCcHHHHHHHHHHhCCccEEEEecccchhhhHHHHHHHHHhhCceeecCCCCcCCCCccccHHHHHHHHHhCCCeEE
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecccchHHhcCCCCCCCCeeecceeecccceeecccccCCCCCCCCCCCceEEEEEeecCCCcccccCccCCCccceE
Q 001405 166 VVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRL 245 (1083)
Q Consensus 166 iveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~l~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~~~~~~~~i 245 (1083)
||||+|+|+.+ +|+|+|+|+||+||||++|+.++. ...+|||+||..... . .|
T Consensus 83 iceQ~e~~~~~------k~~v~R~v~rv~TpGt~~d~~~l~------~~~~n~l~a~~~~~~--------------~-~~ 135 (843)
T COG0249 83 ICEQLEDPAEA------KGVVERKVVRVVTPGTLTDEALLS------DRENNYLAALAIDRD--------------G-KV 135 (843)
T ss_pred EEEcccChhhh------cCcceeEEEEEECCCeeecccccc------ccccceEEEEEecCC--------------C-EE
Confidence 99999999753 469999999999999999988875 357899999986532 1 79
Q ss_pred EEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCccccccchhHHH
Q 001405 246 GVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGGALAE 325 (1083)
Q Consensus 246 GIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F~~~~~~~~ 325 (1083)
|+||+|+|||+|++.+|. +..|.+.|.+++|+|||++..+......... ..+.+.+.+.++|+...+...
T Consensus 136 gla~~dlstGef~~~~~~----~~~l~~~l~r~~p~Eil~~~~~~~~~~~~~~------~~~~~~~~~~~~f~~~~~~~~ 205 (843)
T COG0249 136 GLAFIDLSTGEFFVSEFE----REKLLSELKRLQPKELLLSESLLSSTLAEIQ------KGLFVVRLPASFFDEDDAEEI 205 (843)
T ss_pred EEEEEEcccCeEEEEEee----HHHHHHHHHhCCCcEEEeccccCchhhhhhh------hceeeeecchhhcCccHHHHH
Confidence 999999999999999998 6789999999999999998775433211111 112456778899999988888
Q ss_pred HHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHHHHHHHHHHHhccchhhccCCCceecCCCCeEEe
Q 001405 326 VMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSMEMTL 405 (1083)
Q Consensus 326 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al~all~YL~~~~~~~~l~~~~~~~~~~~~~~M~L 405 (1083)
+..+|.....+. . ++.. .+.+++|+++++.|++..+....... ..++.+....+|.|
T Consensus 206 l~~~~~~~~l~~------------------~---~~~~-~~~~~~a~~~ll~Y~~~t~~~~l~~~-~~~~~~~~~~~m~l 262 (843)
T COG0249 206 LSEYFGVRDLDG------------------F---GLIS-TPLALSAAGALLSYLKDTQKTFLPHI-QIIQRYDLEDYMVL 262 (843)
T ss_pred HHHHhCcccccc------------------c---cccc-chHHHHHHHHHHHHHHHhhhcccccc-ccceeeccCcEEEE
Confidence 888886533221 0 1111 25789999999999988776654333 56677888999999
Q ss_pred CHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccC
Q 001405 406 SANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHD 485 (1083)
Q Consensus 406 D~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~ 485 (1083)
|.+|++||||++|.++++.+|||||+||+|.||||+||||+||.+||+|.+.|+.|||+|++|..+.
T Consensus 263 D~~t~~nLEl~~~~~~~~~~gSL~~~ld~t~T~mG~RlL~~wl~~PL~~~~~I~~Rld~Ve~l~~~~------------- 329 (843)
T COG0249 263 DAATRRNLELFSNLRGNGKKGSLFWLLDRTVTPMGSRLLKRWLLQPLLDKEEIEERLDAVEELKDNP------------- 329 (843)
T ss_pred cHHHHhcccccccCCCCCCCCcHHHHhccCCCchhHHHHHHHhhCcccCHHHHHHHHHHHHHHHhhh-------------
Confidence 9999999999999988889999999999999999999999999999999999999999999998642
Q ss_pred CCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhhchhh
Q 001405 486 EKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLH 565 (1083)
Q Consensus 486 ~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~ 565 (1083)
.+...++..|+++||+||+++|+..++++|+|+..+.+++... ..+..+..... .
T Consensus 330 --------------~l~~~L~~~L~~v~DleRl~~Rl~~~~~~~rDl~~l~~~l~~~-~~i~~~l~~~~----------~ 384 (843)
T COG0249 330 --------------ELREKLREMLKKVPDLERLLSRLSLGRASPRDLLRLRDSLEKI-PEIFKLLSSLK----------S 384 (843)
T ss_pred --------------HHHHHHHHHHhcCcCHHHHHHHHHcCCCChhhHHHHHHHHHHH-HHHHHHHhccc----------c
Confidence 4677888999999999999999999999999999999888664 34444311110 0
Q ss_pred HHHHHHHHHhcCCch-hhhhHHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 001405 566 SALLKRLILTASSPA-VIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMR 644 (1083)
Q Consensus 566 s~lL~~l~~~~~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~ 644 (1083)
...+..+...+.... ..+....+...|+.+.... ..+ ++++.|++++||++|...+..++++.++..+.++..|+.
T Consensus 385 ~~~l~~~~~~i~~~~~~~e~~~ll~~~i~~~~~~~--~~~-~ii~~g~~~eLd~lr~~~~~~~~~i~~le~~~r~~~gi~ 461 (843)
T COG0249 385 ESDLLLLLEDIESLDYLAELLELLETAINEDPPLA--VRD-GIIKEGYNIELDELRDLLNNAKEWIAKLELEERERTGIK 461 (843)
T ss_pred chhhhHHhhhhhccccHHHHHHHHHHHhhhcchhh--cch-hHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 011111111111100 1112222333444444432 122 789999999999999999999999999999999999999
Q ss_pred cceeeEecCceEEEEcccC--CCCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 001405 645 NLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAE 722 (1083)
Q Consensus 645 ~~~~~~~~~~~~~iev~~~--~~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 722 (1083)
++++.+.+-.+|+|+|+.+ ..+|.+|+.+++.++..||.|+++.++.+++..+++++..++.+++.++.+.+..|...
T Consensus 462 slki~~n~v~Gy~ievt~~~~~~~p~~~ir~qt~kn~~rf~t~el~~~e~~i~~a~~~i~~lE~~l~~~~~~~i~~~~~~ 541 (843)
T COG0249 462 SLKIKYNKVYGYYIEVTKSNAKLVPDDYIRRQTLKNAERFTTPELKELEEKLLDAEEKILALEYELFDELREKILAHINE 541 (843)
T ss_pred hhhhhhhccceeEEEechhccccCchHHHHHHHHhcceEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888888778899999876 45899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCC
Q 001405 723 FQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNM 802 (1083)
Q Consensus 723 l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNg 802 (1083)
|+.+..++|+|||++|||..|...+||||+|+++. .+.|++||||+++......|||||+.++- .+++++||||||
T Consensus 542 l~~~a~aLa~lD~l~slA~~a~~~~y~rP~~~~~~---~l~i~~gRHPvvE~~~~~~fVpNd~~L~~-~~~i~lITGPNM 617 (843)
T COG0249 542 LQALAKALAELDVLSSLAEIAAEQNYVRPEFVDSN---DLEIKEGRHPVVEAVLDNGFVPNDIDLSG-NRRIILITGPNM 617 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCceecCCC---CEEEEecCcchhhhhccCCcccCceeeCC-CceEEEEECCCC
Confidence 99999999999999999999999999999999876 49999999999998776669999999995 689999999999
Q ss_pred CCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 001405 803 GGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGR 882 (1083)
Q Consensus 803 sGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~ 882 (1083)
|||||||||+|++++|||+||||||+.+.++++|+||+|+|+.|++..|.||||.||.+++.||+.+++.|||||||.||
T Consensus 618 ~GKSTylRQvali~imAQiGsfVPA~~A~i~ivD~IfTRiGa~DDL~~G~STFMvEM~Eta~IL~~AT~~SLvilDEiGR 697 (843)
T COG0249 618 GGKSTYLRQVALIVILAQIGSFVPAEKARIGIVDRIFTRIGAADDLASGRSTFMVEMLETANILDNATERSLVILDEIGR 697 (843)
T ss_pred CccHHHHHHHHHHHHHHHcCCCeeHHHccccccceeeecccccchhhccccHHHHHHHHHHHHHHhCCCCcEEEEecccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCC
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPG 962 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G 962 (1083)
||++.||.+|+|+++++|.+..+|.+||+|||++++++....+. |.|+||...+ . +++++|+|++.+|
T Consensus 698 GTsT~DGlaIA~Av~eyL~~~~~~~tLFATHy~ELt~l~~~~~~-v~N~h~~~~e--------~---~~~i~Fl~kv~~G 765 (843)
T COG0249 698 GTSTYDGLAIAWAVLEYLHEKIGCRTLFATHYHELTELEEKLPQ-VKNYHMSAVE--------E---GGDITFLYKVKPG 765 (843)
T ss_pred CCCcchhHHHHHHHHHHHHhccCceEEEeccHHHHHHhhhcccc-cceeEEEEEE--------c---CCceEEEEEeccC
Confidence 99999999999999999998559999999999999999998887 9999999664 1 4569999999999
Q ss_pred CCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHh
Q 001405 963 VSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVS 998 (1083)
Q Consensus 963 ~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~~~ 998 (1083)
+|++|||++||++||+|.+||+||++++.++++.-.
T Consensus 766 ~a~~SyGi~VAklaGlP~~Vi~rA~~il~~le~~~~ 801 (843)
T COG0249 766 IADKSYGIHVAKLAGLPEEVIERAREILAELEKESR 801 (843)
T ss_pred CCCccHHHHHHHHhCCCHHHHHHHHHHHHHHhhccc
Confidence 999999999999999999999999999999988654
No 4
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=100.00 E-value=1.2e-143 Score=1346.48 Aligned_cols=788 Identities=34% Similarity=0.488 Sum_probs=681.8
Q ss_pred CCCCCCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCC-----CceeccccccChHHHHHHHHH
Q 001405 85 HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDH-----NFMTASIPTFRLNVHVRRLVN 159 (1083)
Q Consensus 85 ~~~~~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~-----~~~~aG~P~~~l~~~~~~Lv~ 159 (1083)
...++||||+|||+||++|||+||||||||||||||+||++||++|||+++.++ ++||||||+|+++.|+++||+
T Consensus 4 ~~~~~TP~~~Qy~~iK~~~~D~ilffr~GdFYElf~eDA~~~s~~L~i~lt~r~~~~~~~~pm~GvP~h~~~~yl~kLv~ 83 (854)
T PRK05399 4 DMSKLTPMMQQYLEIKAQYPDALLFFRMGDFYELFFEDAKKASRLLDITLTKRGKSAGEPIPMAGVPYHAAEGYLAKLVK 83 (854)
T ss_pred CcCCCCHHHHHHHHHHhhCCCEEEEEEcCCEEEEeHhhHHHHHHHhCeEEeeccCCCCCCCCEecCcHHHHHHHHHHHHH
Confidence 356799999999999999999999999999999999999999999999987643 479999999999999999999
Q ss_pred cCCEEEEEecccchHHhcCCCCCCCCeeecceeecccceeecccccCCCCCCCCCCCceEEEEEeecCCCcccccCccCC
Q 001405 160 AGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGD 239 (1083)
Q Consensus 160 ~GykVaiveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~l~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~~~ 239 (1083)
+|||||||||+|||+.+ +|+|+|+||+||||||+++++++. +..+|||+||++..
T Consensus 84 ~GyKVaI~EQ~e~~~~~------k~~v~R~v~~i~TpGT~~~~~~l~------~~~~~yl~ai~~~~------------- 138 (854)
T PRK05399 84 KGYKVAICEQVEDPATA------KGPVKREVVRIVTPGTVTDEALLD------EKQNNYLAAIAQDG------------- 138 (854)
T ss_pred CCCEEEEEEecCChhhc------CCccceEEEEEECCCeeecccccC------CCCCcEEEEEEECC-------------
Confidence 99999999999999642 379999999999999999987765 35789999998642
Q ss_pred CccceEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCcccccc
Q 001405 240 GFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIG 319 (1083)
Q Consensus 240 ~~~~~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F~~ 319 (1083)
..||+||+|+|||+|++++| .+++|++.|.+++|+|||++....... +... ...+...+.+.|+.
T Consensus 139 ---~~~Gia~~D~stg~~~~~~~----~~~~L~~~l~~~~P~Eil~~~~~~~~~---~~~~-----~~~~~~~~~~~f~~ 203 (854)
T PRK05399 139 ---GGYGLAYLDLSTGEFRVTEL----DEEELLAELARLNPAEILVPEDFSEDE---LLLL-----RRGLRRRPPWEFDL 203 (854)
T ss_pred ---CeEEEEEEECCCCeEEEEEE----cHHHHHHHHHhcCCcEEEEcCCcchhh---Hhhc-----cccceeccccccCh
Confidence 16999999999999999999 367899999999999999987654332 1111 11222344557887
Q ss_pred chhHHHHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHHHHHHHHHHHhccchhhccCCCceecCC
Q 001405 320 GGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSG 399 (1083)
Q Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al~all~YL~~~~~~~~l~~~~~~~~~~~ 399 (1083)
..+...+..+|...+... . ++ ..+++++|+|+++.||+.++... +.....+..+..
T Consensus 204 ~~~~~~l~~~f~~~~~~~------------------~---~~--~~~~~~~a~~all~Yl~~~~~~~-~~~~~~~~~~~~ 259 (854)
T PRK05399 204 DTAEKRLLEQFGVASLDG------------------F---GV--DLPLAIRAAGALLQYLKETQKRS-LPHLRSPKRYEE 259 (854)
T ss_pred HHHHHHHHHHhCcCCccc------------------c---CC--CCHHHHHHHHHHHHHHHHhchhh-hhccCCCEEECC
Confidence 788888888875311110 0 11 23568999999999999987644 333456788889
Q ss_pred CCeEEeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccc
Q 001405 400 SMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSE 479 (1083)
Q Consensus 400 ~~~M~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~ 479 (1083)
.++|.||++|++||||++|.+ |+.+||||++||||+||||+||||+||++||+|+++|++|||+|++|+++.
T Consensus 260 ~~~m~lD~~tl~~Lei~~~~~-~~~~gSL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~------- 331 (854)
T PRK05399 260 SDYLILDAATRRNLELTENLR-GGRKNSLLSVLDRTVTAMGGRLLRRWLHRPLRDREAIEARLDAVEELLEDP------- 331 (854)
T ss_pred CCEEEcCHHHHHhccCCccCC-CCCCCcHHHHhccCCCcHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHhCH-------
Confidence 999999999999999999865 456789999999999999999999999999999999999999999998642
Q ss_pred cccccCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhh
Q 001405 480 SVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKV 559 (1083)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~ 559 (1083)
.++..++..|+++||+||+++|+..++++++|+..+.+++..+ ..+.++. .
T Consensus 332 --------------------~~~~~l~~~L~~i~Dlerll~ri~~~~~~~~dl~~l~~~l~~~-~~l~~~l-~------- 382 (854)
T PRK05399 332 --------------------LLREDLRELLKGVYDLERLLSRIALGRANPRDLAALRDSLEAL-PELKELL-A------- 382 (854)
T ss_pred --------------------HHHHHHHHHHhcCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHH-HHHHHHH-H-------
Confidence 4667888999999999999999999999999999998887653 3444331 0
Q ss_pred hhchhhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001405 560 TSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRK 639 (1083)
Q Consensus 560 ~~~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~ 639 (1083)
...++++..+...... ..+....+.+.|+.+.... ..+.+.+++|++++||++|+.+++++++++++..++++
T Consensus 383 ---~~~~~~l~~l~~~l~~--~~~l~~~i~~~i~~~~~~~--~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~ 455 (854)
T PRK05399 383 ---ELDSPLLAELAEQLDP--LEELADLLERAIVEEPPLL--IRDGGVIADGYDAELDELRALSDNGKDWLAELEARERE 455 (854)
T ss_pred ---hcCcHHHHHHHhhccc--HHHHHHHHHHHHccCCchh--cccCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1124556666543321 1122223334455433221 23456799999999999999999999999999999999
Q ss_pred HhCCCcceeeEecCceEEEEcccC--CCCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 001405 640 QLGMRNLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFG 717 (1083)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~iev~~~--~~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~ 717 (1083)
.++++.+++.+....+|+|+|+.. .++|+.|+..+++++..||+++++.++++++..+++++...+.++++++.+.+.
T Consensus 456 ~~~~~~l~~~~~~~~gy~iev~~~~~~~vp~~~~~~~s~~~~~rf~t~~l~~l~~~l~~~~~~~~~~e~~i~~~l~~~i~ 535 (854)
T PRK05399 456 RTGISSLKVGYNKVFGYYIEVTKANLDKVPEDYIRRQTLKNAERYITPELKELEDKILSAEEKALALEYELFEELREEVA 535 (854)
T ss_pred HcCCCceEEEEcCceeEEEEEEcchhhhCChhhhheeeccCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999888888999999976 359999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecc-cccccccccccccCCceEEE
Q 001405 718 GYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL-LDNFVPNDTNLHAEREYCQI 796 (1083)
Q Consensus 718 ~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~-~~~~v~ndi~l~~~~g~i~~ 796 (1083)
++...|..+++++++|||++|||.+|...+||||+|.++. .+.|++||||+++... ++.|||||+.|+ +.+++++
T Consensus 536 ~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~---~l~i~~~rHP~le~~~~~~~~vpnd~~l~-~~~~~~i 611 (854)
T PRK05399 536 EHIERLQKLAKALAELDVLASLAEVAEENNYVRPEFTDDP---GIDIEEGRHPVVEQVLGGEPFVPNDCDLD-EERRLLL 611 (854)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCccccEEeCCC---CEEEEeccCcEEecccCCCceEecceeeC-CCCcEEE
Confidence 9999999999999999999999999999999999998765 7999999999998753 467999999999 6688999
Q ss_pred EEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEE
Q 001405 797 ITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVI 876 (1083)
Q Consensus 797 ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvl 876 (1083)
||||||||||||||++|++++|||+|+||||..+.++++|+||+|+|+.|++..+.|||+.||.+++.|+..+++++|||
T Consensus 612 iTGpN~~GKSt~lr~v~l~~ilAq~G~~VPa~~a~i~~~d~I~triga~d~i~~g~STF~~E~~~~~~il~~at~~sLvl 691 (854)
T PRK05399 612 ITGPNMAGKSTYMRQVALIVLLAQIGSFVPAESARIGIVDRIFTRIGASDDLASGRSTFMVEMTETANILNNATERSLVL 691 (854)
T ss_pred EECCCCCCcHHHHHHHHHHHHHHhcCCceeccceEecccCeeeeccCcccccccCcccHHHHHHHHHHHHHhCCCCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeee
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYL 956 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 956 (1083)
|||||+||++.||.++++++++++.+..+|++||+||++++..+++++|+ |.|+||++... ++.++|+
T Consensus 692 lDE~GrGTs~~dg~aia~aile~l~~~~~~~~l~aTH~~el~~l~~~~~~-v~n~~m~~~~~-----------~~~l~fl 759 (854)
T PRK05399 692 LDEIGRGTSTYDGLSIAWAVAEYLHDKIGAKTLFATHYHELTELEEKLPG-VKNVHVAVKEH-----------GGDIVFL 759 (854)
T ss_pred EecCCCCCCcchhHHHHHHHHHHHHhcCCceEEEEechHHHHHHhhhcCC-eEEEEEEEEEe-----------CCeEEEE
Confidence 99999999999999999999999988447999999999999999999997 99999998641 5689999
Q ss_pred EeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Q 001405 957 YKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAE 996 (1083)
Q Consensus 957 ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~ 996 (1083)
|||.+|+|++||||+||++||+|++||+||++++.++++.
T Consensus 760 Ykl~~G~~~~SyGi~VA~laGlP~~VI~rA~~i~~~le~~ 799 (854)
T PRK05399 760 HKVVPGAADKSYGIHVAKLAGLPASVIKRAREILAQLESA 799 (854)
T ss_pred EEeCcCCCCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999863
No 5
>KOG0217 consensus Mismatch repair ATPase MSH6 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=4.7e-133 Score=1174.49 Aligned_cols=848 Identities=30% Similarity=0.440 Sum_probs=693.4
Q ss_pred CCCCCCCCCC--C--CCCC-CcC--CCCCCCHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccCCCC
Q 001405 67 KLSPHTLNPI--P--TPSS-QTT--HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHN 139 (1083)
Q Consensus 67 ~~~~~~~~~~--~--~~~t-~~~--~~~~~TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~~~~ 139 (1083)
+.+++..+++ | ||+| |+| .+.++||+++|||+||++|+|+||||++|+|||+|++||.+++++|+|+.. ++|
T Consensus 219 ~~RD~~rrr~~dp~yDp~TLyiP~s~~~kftpg~kqwWeiKs~~fD~ivfFk~GKFyELye~DA~vg~~~~dl~f~-~vN 297 (1125)
T KOG0217|consen 219 DVRDALRRRRGDPEYDPRTLYIPPSFWKKFTPGEKQWWEIKSDNFDTIVFFKKGKFYELYEMDALVGARLFDLKFM-DVN 297 (1125)
T ss_pred HhhhhhcCCCCCCCCCccceecCHHHHhcCCchhhhhhhhhhhcccEEEEEecchHHHHHhhhhhhhhhhcceeec-ccc
Confidence 3466666666 4 8999 999 799999999999999999999999999999999999999999999999854 599
Q ss_pred ceeccccccChHHHHHHHHHcCCEEEEEecccchHHhcCCC----CCCCCeeecceeecccceeecccccCCCCCCCCCC
Q 001405 140 FMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIKAHGP----GKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGE 215 (1083)
Q Consensus 140 ~~~aG~P~~~l~~~~~~Lv~~GykVaiveQ~Et~~~k~~~~----~k~~~v~R~v~~v~TpGT~~~~~~l~~~~~~~~~~ 215 (1083)
+||||||+++++.|+.+|+++|||||+|||+||+..+.... ++.++|+|+||+|+|.||+++.+++. ...
T Consensus 298 ~~~~GfPE~sf~~~a~q~iq~GYkvarVEQtEt~l~~e~r~~~~~~kdkvvrRev~~ilt~GT~td~~l~~------~~~ 371 (1125)
T KOG0217|consen 298 MPHSGFPEGSFDYWADQFIQKGYKVARVEQTETPLGKEIRERKTGKKDKVVRREVCRILTNGTLTDIALLT------SDL 371 (1125)
T ss_pred cccCCCCccchhhHHHHHHhccceeeeeccccChHHhhhhhcccccchhhHHHHHHHHhcCCcchhHHHhc------cHH
Confidence 99999999999999999999999999999999998864332 23459999999999999999966654 233
Q ss_pred CceEEEEEeecCCCcccccCccCCCccceEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCC-CChHHH
Q 001405 216 SNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQP-LSKQTE 294 (1083)
Q Consensus 216 ~~yLlaI~e~~~~~~~~~~~~~~~~~~~~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~-ls~~~~ 294 (1083)
..||+||.+.... .. .....+|+|++|++||+++++||+||..++.|.|+|.+++|+|+|.+.. ++..+.
T Consensus 372 akylmai~e~~~~------~~---~~~~s~gvc~iDtstge~~~~eF~DDr~~s~L~tlLs~~rp~E~I~e~~~ls~~t~ 442 (1125)
T KOG0217|consen 372 AKYLMAIKESEES------YS---TGEVSFGVCFIDTSTGEINIGEFCDDRHCSKLDTLLSQVRPVELIEERKNLSDPTK 442 (1125)
T ss_pred HHHHHHHhhcCCC------CC---cCceeeeEEEEEcccceEEEEEeecchhhhHHHHHHHcccHHHHHHHhhccCCcee
Confidence 7799999886542 00 1345899999999999999999999999999999999999999998743 444333
Q ss_pred HHHHHhcCCCCcceeeecCcccccc-chhHHHHH--HHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHH
Q 001405 295 KMLLAYAGPASNVRVECASRDCFIG-GGALAEVM--SLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQA 371 (1083)
Q Consensus 295 k~l~~~~~~~~~~~v~~~~~~~F~~-~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~A 371 (1083)
..+..... ++.....++...|.+ .....+++ ++|...+.. +..+.+... ....++++.|
T Consensus 443 ~~ik~~~~--~~~~~n~~~~~eFwdsek~~~eii~~dy~~~~g~e---~~~sil~~p-------------~~~~~la~sa 504 (1125)
T KOG0217|consen 443 VIIKLKLS--SNLVENLVPKSEFWDSEKTGREIISEDYFESLGLE---DSPSILKSP-------------NTDKELALSA 504 (1125)
T ss_pred eeeeeeec--chhhhcccChhhhcchhhHHHHHhhhhhhhccccc---CchhhccCC-------------CccchhhHHH
Confidence 32221111 111122233333443 33333332 233310000 000000000 0113589999
Q ss_pred HHHHHHHHHHhccchhhccCCCceecCCC--CeEEeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhh
Q 001405 372 LALTIRHLKQFGLERIMCLGASFRSLSGS--MEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVT 449 (1083)
Q Consensus 372 l~all~YL~~~~~~~~l~~~~~~~~~~~~--~~M~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~ 449 (1083)
+|+++.||++..++..+....++..|... ..|+||++|++|||||.|.++|+.+||||..+|+|.||||+|||+.|++
T Consensus 505 fg~~~~Ylk~~~id~~llsm~n~~ey~~~~~s~mvlD~~tL~NleIf~Ns~~G~~~gtL~~~~~~csTpfGKRllk~Wl~ 584 (1125)
T KOG0217|consen 505 FGGLFYYLKKLLIDEELLSMKNFEEYDSLDQSEMVLDGATLENLEIFSNSRNGGDEGTLFYAVNRCSTPFGKRLLKTWLM 584 (1125)
T ss_pred HHHHHHHHHHHhhHHHHhhhhhhhhcchhcccceeecchhhhhhhhhccCCCCCCchhHHHHHhhccChHHHHHHHHHhh
Confidence 99999999999999888877888876632 3499999999999999999999999999999999999999999999999
Q ss_pred CcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCC-
Q 001405 450 HPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTAT- 528 (1083)
Q Consensus 450 ~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~- 528 (1083)
+||+|.+.|++|||||+.|...+ ..+..+...|+++||+||+|.|+|.+..+
T Consensus 585 ~Pl~~~~~I~~R~dav~~l~~~~---------------------------~~~~~~~e~l~klPDlERlL~Rih~~~~~~ 637 (1125)
T KOG0217|consen 585 APLCDKEDIKQRQDAVDSLGKAP---------------------------MDRTKVGETLKKLPDLERLLVRIHNGGEKN 637 (1125)
T ss_pred CcCCCHHHHHHHHHHHHHHhcCc---------------------------hhHHHHHHHHhhCCcHHHHHHHHHhcCccc
Confidence 99999999999999999997532 35567888999999999999999998766
Q ss_pred hh---HHHHHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccCcccc
Q 001405 529 PS---EFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNL 605 (1083)
Q Consensus 529 ~~---d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~ 605 (1083)
++ ||++++..+....+.+..+. +.........+|..+... -++....+.......+...+.. ...
T Consensus 638 ~k~i~~f~rvLegfk~~~~~~~~~~-------~v~~~~~~~~~is~~~~~--~p~~~~~i~~~~~af~r~~a~~---eg~ 705 (1125)
T KOG0217|consen 638 KKKIADFIRVLEGFKEINKLLGSLI-------NVLKEGEGLRLISELLES--MPNLSEEIENWTEAFDRVKAVK---EGV 705 (1125)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhHHHHHHHHHhcC--cchhhHHHHHHHHHHHHHHHhh---cCc
Confidence 43 56666655544333332221 000001111223222221 1112223333444445433322 245
Q ss_pred cccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeeEecCceEEEEcccCCCCCCc--EEEeeecCCeEEEe
Q 001405 606 MIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANFKVPLN--WAKVNSTKKTIRYH 683 (1083)
Q Consensus 606 ~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~iev~~~~~~p~~--~~~~~~~~~~~r~~ 683 (1083)
+.+..|++.|+|+..+.++++++++..++..+++.++++++.|+.++...|++|+|.+..+|.. |+..++.+++.||+
T Consensus 706 i~P~~Gfd~eyD~a~k~~~e~e~~L~~~L~~~rk~l~c~si~~~~vGk~~y~lEvP~n~~~~s~~~~~~~S~~Kg~~RY~ 785 (1125)
T KOG0217|consen 706 IVPLEGFDEEYDEAMKRVDEAENELLAYLEEYRKRLGCSSIVFVDVGKDVYQLEVPENGGVPSSLRYELMSAKKGVSRYY 785 (1125)
T ss_pred cCCCccccHHHHHHhhHHHHHHHHHHHHHHHHHHhcCCCceeEeecCceEEEEecCcccCCCCchHHHHHHhhcCccccc
Confidence 6778899999999999999999999999999999999999999999999999999998776665 99999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCccceeecCCC-cc
Q 001405 684 SPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNK--NFVRPVFVDDHE-PV 760 (1083)
Q Consensus 684 ~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~--~~~~P~~~~~~~-~~ 760 (1083)
++++.++...+.+++++.........+++...|..|+..|+..+++++.||||+|+|.+|+.. .+|||++++..+ +.
T Consensus 786 tp~~~kli~~l~~aee~~~~~~~d~~~r~~~~f~~~~~~w~~tv~~~a~iD~l~sla~~s~~~~~~~Crp~i~~~~dt~~ 865 (1125)
T KOG0217|consen 786 TPDLRKLIAHLDEAEERKKSSLSDLKRRLIVRFDEHYIIWQATVKALASIDCLLSLAETSKGLGGPMCRPEIVESTDTPG 865 (1125)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccceeecccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999874 599999986543 33
Q ss_pred eeeeecCccceeeecc-cccccccccccc-cCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHH
Q 001405 761 QIHICSGRHPVLDTIL-LDNFVPNDTNLH-AEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGI 838 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~-~~~~v~ndi~l~-~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i 838 (1083)
.+.++..+||++.... ++.||||+|.+. ..+..+.++|||||+|||||||+++.+++|||+||+|||+.+.++.+|+|
T Consensus 866 ~l~~~~~~Hpcfsl~s~~~~fipN~v~~g~~~e~~~~llTGpNmgGKSTllRq~c~~vilaq~G~~VPa~~~~~tpidrI 945 (1125)
T KOG0217|consen 866 FLIVKGLRHPCFSLPSTGTSFIPNDVELGGAEENREGLLTGPNMGGKSTLLRQACIAVILAQIGCDVPAEVMELTPIDRI 945 (1125)
T ss_pred eeEEecccCceeecCcCCCccccchhhccccccceeeeeccCCcCCchHHHHHHHHHHHHHHhCCCccHHHhcccchHHH
Confidence 6899999999998654 457999999998 44455667999999999999999999999999999999999999999999
Q ss_pred HhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 839 YTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 839 ~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|+|+|+.|++..+.|||+.|+.+...|+..+++.+||++||++|||.+.+|.+|+.+++++|....+|..+|+|||+.++
T Consensus 946 ~tRlGA~D~im~g~STF~vELsET~~IL~~aT~~SLvi~DELGRGtst~DG~aIA~aVLe~l~~~i~c~~fFSTHYhsl~ 1025 (1125)
T KOG0217|consen 946 FTRLGANDDIMSGESTFFVELSETKKILKHATRHSLVIVDELGRGTSTFDGTAIAEAVLEHLSEGIQCLGFFSTHYHSLC 1025 (1125)
T ss_pred hhhcccccchhcCCceEEEeccchHHHHhhcCccceeeehhhcCcccccCCcchHHHHHHHHHhcccccCCccccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999987899999999999998
Q ss_pred HHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHh
Q 001405 919 DIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVS 998 (1083)
Q Consensus 919 ~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~~~ 998 (1083)
.--.++|. |.+.||++... + ..+++|+||+.+|+|++|||++||++||+|..||++|...+.+++....
T Consensus 1026 ~~~~~~p~-Vrl~~Ma~~vd-------~---e~~vtFLYkl~~G~cpkSyG~~vArmaglp~~vi~~a~~~a~E~e~~~~ 1094 (1125)
T KOG0217|consen 1026 VDFMHHPQ-VRLLHMACVVD-------E---EIDVTFLYKLEEGICPKSYGFNVARMAGLPDQVIDRAEIKAHELEKSSA 1094 (1125)
T ss_pred HhhhcCcc-ccchhheeeec-------C---CccEEEeehhccCCCCcchhHHHHHhcCCcHHHHHHHHHHHHHHHHHHH
Confidence 76667786 99999999862 1 2369999999999999999999999999999999999999999998874
No 6
>KOG0219 consensus Mismatch repair ATPase MSH2 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-85 Score=757.79 Aligned_cols=802 Identities=27% Similarity=0.352 Sum_probs=612.8
Q ss_pred HHHHHHHHHHhhCC---CeEEEEEeCcEEEEecHHHHHHHHHhCcc------c--cCCCCceeccccccChHHHHHHHH-
Q 001405 91 PLEQQVVELKTKYP---DVLLMIEVGYKFRFFGEDAEMAAKVLGIY------A--HLDHNFMTASIPTFRLNVHVRRLV- 158 (1083)
Q Consensus 91 P~~~Qy~~iK~~~~---D~iL~fr~G~FYElf~~DA~~aa~~L~i~------~--~~~~~~~~aG~P~~~l~~~~~~Lv- 158 (1083)
.+.+-|..+=+.-| ++|-||-.|+||-.||+||..+|+.-==+ + ....++..+.+--..+...++-|+
T Consensus 14 ~~~~~f~~f~~~l~~p~~tvr~fdrge~ytv~geDa~~va~~v~kt~~~~k~l~~~~~~~~~~v~ls~~~~e~~vr~~l~ 93 (902)
T KOG0219|consen 14 AADRNFLKFYEGLPKPTTTVRFFDRGEYYTVHGEDAEFVARNVYKTQAVIKTLSPDNAKNTKEVSLSKGNFEKVVRELLL 93 (902)
T ss_pred hhHHHHHHHHhcCCCCCceEEEecCcceEEEeccchhhhhhhhhhhhhhheecCCcccccceEEEecHHHHHHHHHHHHH
Confidence 34444444433332 89999999999999999999999964111 1 112356668888889999999888
Q ss_pred HcCCEEEEEecccchHHhcCCCCCCCCeeecceeecccceeeccccc-CCCCCCCCCCCceEEEEEeecCCCcccccCcc
Q 001405 159 NAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDV-GGGEDGCGGESNYLVCVVDDDGNVGKIRNGVF 237 (1083)
Q Consensus 159 ~~GykVaiveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~~l-~~~~~~~~~~~~yLlaI~e~~~~~~~~~~~~~ 237 (1083)
..+|+|-+.+=-|. ...+++|. +||.+.+.+++ .++.+. .. ++-++.+.... +
T Consensus 94 ~~~~~Ve~y~~~~~---------~w~l~~~~-----sPGN~~~fedll~~~~~v-~i-s~~~~~v~~~~---------~- 147 (902)
T KOG0219|consen 94 VLRYRVEVYSSNQG---------DWKLTKRG-----SPGNLVQFEDLLFSNNDV-PI-SIISLIVKHPG---------V- 147 (902)
T ss_pred HhccceEEeecCcc---------ceeEEecC-----CCCcHHHHHHHHcccccc-hh-hhhheeEEeec---------c-
Confidence 79999988863211 12356665 99999776554 221111 11 11112222221 1
Q ss_pred CCCccceEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHHHHHhcCCCCcceeeecCcccc
Q 001405 238 GDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCF 317 (1083)
Q Consensus 238 ~~~~~~~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~l~~~~~~~~~~~v~~~~~~~F 317 (1083)
+....+|+|++|.+--.+++.+|.|+..+++++..+.++.|.|+|++...+....+-+..+.. ..++-++......|
T Consensus 148 --~~~~~vgv~~~d~~~~k~~~~ef~Dn~~~snle~~l~~lg~kEcll~~~~~~~~~~kl~~~~~-r~g~~~t~~~~~e~ 224 (902)
T KOG0219|consen 148 --DGQRRVGVAFVDTINVKIGLSEFVDDDSFSNLEALLIQLGPKECVLPEGSVAGEMKKLRNIID-RCGVLITLRKKSES 224 (902)
T ss_pred --CCCceeEEEEechhheeeehhhhcCcHHHHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh-ccCeEEEEecccch
Confidence 124589999999999999999999999999999999999999999984333322222222221 12333333333334
Q ss_pred ccchhHHHHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHHHHHHHHHHHhccchhhccCCCceec
Q 001405 318 IGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSL 397 (1083)
Q Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al~all~YL~~~~~~~~l~~~~~~~~~ 397 (1083)
.+..-+..+...+...... ..+.... ..+|+.++.+++.|+.-.+-..... ...+..+
T Consensus 225 ~~kdv~~~l~~~l~~~~~~-------------------~~~~e~~--~q~a~~~~~~~i~yl~~~~e~~~s~-~~ei~~~ 282 (902)
T KOG0219|consen 225 SWKDVEQDLNRLLKSQEHA-------------------AYLPELE--LQLAMSALSALIKYLDLENEYSNSG-KYELTNH 282 (902)
T ss_pred hHHHHHHHHHhcccchhhh-------------------ccchHHH--hHHHHHHHHHHHHHHhhcccccccc-eEEEeec
Confidence 3332222222222110000 0000111 2568899999999995332221111 1223344
Q ss_pred CCCCeEEeCHhhHhhccceeecCC-CCccccHhh-hhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCc
Q 001405 398 SGSMEMTLSANTLQQLEVLRNNSN-GSEYGTLLH-IMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSY 475 (1083)
Q Consensus 398 ~~~~~M~LD~~Tl~nLEI~~n~~d-gs~~gSL~~-~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~ 475 (1083)
....+|.||.+|+++|++|+...+ -....+|.. +||||+|++|-|||++|+.+||+|+..|++|+|.|+.|+++..
T Consensus 283 ~~~~~m~ld~~av~alnlf~~~~~~~~~s~~L~~~~LN~c~t~~G~rll~~w~~qpL~~~~ri~~r~d~v~~l~~~~~-- 360 (902)
T KOG0219|consen 283 GLHQFMRLDSAAVRALNLFPLPYNNPEKSNNLALSLLNHCKTLQGERLLRQWLKQPLRDIDRINERHDLVEALVEDAE-- 360 (902)
T ss_pred chHHHhhHHHHHHHHHhhcCCCCCCccccchhhHHHHhhcccccchhhhhhhhhcchHHHHHHHHHhhhHHHHHhhhH--
Confidence 456789999999999999975422 223457887 9999999999999999999999999999999999999987521
Q ss_pred cccccccccCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccc
Q 001405 476 RTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEY 555 (1083)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~ 555 (1083)
.+..+ -+..|.++||+-|+..|+. +++..|..++++......+..+.+...
T Consensus 361 ----------------------~rq~L--~~~lL~~~pdi~rl~~~l~--~~~L~d~~r~yq~~~~l~~~~~~l~~~--- 411 (902)
T KOG0219|consen 361 ----------------------IRQKL--RDDLLRRIPDISRLARRLM--KANLQDVNRIYQAAKLLPTVVQVLISL--- 411 (902)
T ss_pred ----------------------HHHHH--HHHHhhcChhHHHhhhhhh--hcchHHHHHHHHHHHHhHHHHHHHHhh---
Confidence 11111 1457889999999999998 889999998888776544444433110
Q ss_pred hhhhhhchhhHHHHHHHHHhcCCchhhhhH-HHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 001405 556 REKVTSKTLHSALLKRLILTASSPAVIGKA-AKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLI 634 (1083)
Q Consensus 556 ~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~-~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l 634 (1083)
.......+.+++. +... ....+ ..+...++.++.+. +.+.++..++++|.++|+.+++++.++.++.
T Consensus 412 -~~~~~~ll~~~l~----~~~~---~~~kf~~~ve~t~D~da~ee----~ey~VR~eFdeeL~eLrq~LdeL~~~m~~~h 479 (902)
T KOG0219|consen 412 -SESHNRLLKSPLT----EHLK---KLEKFQEMVETTVDLDAEEE----NEYRVRVDFDEELQELREKLDELERKMEKLH 479 (902)
T ss_pred -hhhhhhhhhhhhh----hhhh---hHHHHHHHHHHHhhHhHHhc----CcEEEecccCHHHHHHHHHHHHHHHHHHHHH
Confidence 0111122222222 2111 11122 22334566666654 6789999999999999999999999999999
Q ss_pred HHHHHHhCCCc---ceeeEecCceEEEEcccC----CCCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHH
Q 001405 635 NMCRKQLGMRN---LEFMSVSGITHLIELPAN----FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRA 707 (1083)
Q Consensus 635 ~~~~~~~~~~~---~~~~~~~~~~~~iev~~~----~~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~ 707 (1083)
.+....++... ++.-....++|++.+... .+-.++|...++.|+.++|+|.++..++++....+.++.....+
T Consensus 480 krv~~dl~~D~~kklkLe~~~~~G~~~RlTr~e~~~LR~~k~y~eLstqK~GV~FTtk~L~slN~e~~~~qk~Y~~~Q~~ 559 (902)
T KOG0219|consen 480 KKVSADLGLDPKKQLKLENSAQFGWYFRVTRKEEKVLRKKKNYTELSTQKGGVKFTTKKLSSLNDEFMSLQKEYDEAQNE 559 (902)
T ss_pred HHHHhhcCCCcccceeeeccchhheeeeeeehhhhHhhccCCceEEEEeeCcEEEEhhhHhhhHHHHHHHHHHHHHHHHH
Confidence 99999887753 555555667777776543 23457999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh--cCCCccceeecCCCcceeeeecCccceeeeccccccccccc
Q 001405 708 AWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSR--NKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDT 785 (1083)
Q Consensus 708 ~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~--~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi 785 (1083)
+.++++.....|.+-|..+...+|.|||+.|||++|. -..|+||.+.+.+. ..+.++++|||+++..-...|+|||+
T Consensus 560 ivrevikia~tY~Ppleal~~vlAhLDv~~SFa~~st~a~~pYvRP~~l~~gs-~rl~l~~~rHp~lE~Qd~~~fIpNdv 638 (902)
T KOG0219|consen 560 IVREIIKIAATYTPPLEALNQVLAHLDVFVSFAHAATVAPIPYVRPKLLPLGS-KRLELKQSRHPVLEGQDEIPFIPNDV 638 (902)
T ss_pred HHHHHHHHHhhcCCcHHHHHHHHHHHHhheeehhhcccCCCCccCccccccch-hHHHHHhcccchhhccccCCCCCCcc
Confidence 9999999999999999999999999999999999998 46899999887652 26899999999999866678999999
Q ss_pred ccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHH
Q 001405 786 NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYI 865 (1083)
Q Consensus 786 ~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~i 865 (1083)
.|...++++.+||||||+||||++|+.|.+++|||+|||||++.+.++++|.|++|.|+.|...+|.||||.||.+++.|
T Consensus 639 ~le~~~~~~~IiTGpNMGGKSTyir~~Gvi~lmAQIGcfVPce~A~i~IvD~Il~RVGA~D~q~kG~STFM~Emleta~I 718 (902)
T KOG0219|consen 639 VLEKGKCRMLIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCESATISIVDGILTRVGAGDSQLKGISTFMAEMLETASI 718 (902)
T ss_pred ccccCCceEEEEeCCCcCccchhhhhhhHHHHHHHhCCceehhhcCCchhhHHHhhhccchhhhcchHHHHHHHHHHHHH
Confidence 99998999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCC
Q 001405 866 LRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPM 945 (1083)
Q Consensus 866 l~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~ 945 (1083)
++.++..||||+|||||||++.||..++|++-+++....||..||+||++++..++...+. |.|.||.....
T Consensus 719 lr~at~~SliiiDELGRGTSt~DGfgiAwai~ehi~~ki~cf~lfATHfhElt~lae~~~~-vKn~h~~a~i~------- 790 (902)
T KOG0219|consen 719 LRRATKNSLIIIDELGRGTSTYDGFGIAWAIAEHIATKIGCFCLFATHFHELTKLAEQLPT-VKNLHVTAQIE------- 790 (902)
T ss_pred HHhcCCCcEEEEeccCCCceeccCccHHHHHHHHHHHHHhHhHHHHhHHHHHHhhhhhhhh-hhhheeeeEec-------
Confidence 9999999999999999999999999999999999988789999999999999999877776 99999997752
Q ss_pred CCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHhh
Q 001405 946 DSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSS 999 (1083)
Q Consensus 946 ~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~~~~~~ 999 (1083)
++.++.+|++.+|+|+.||||+||+++|+|+.||+.|+..++++++..-.
T Consensus 791 ----~~~~~llY~V~~Gv~d~SFGi~VA~~a~fp~~vie~A~~~~~ele~~~~~ 840 (902)
T KOG0219|consen 791 ----NDDITLLYKVFEGVCDQSFGIHVAELVGFPEHVIEMAKQKAEELEDELVI 840 (902)
T ss_pred ----CcchhhHHHHhcccccCcchhhHHHHcCCChHHHHHHHHHHHHHHHHHhh
Confidence 56789999999999999999999999999999999999999999987765
No 7
>KOG0220 consensus Mismatch repair ATPase MSH4 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=7.5e-78 Score=684.46 Aligned_cols=692 Identities=26% Similarity=0.394 Sum_probs=562.1
Q ss_pred CCceEEEEEeecCCCcccccCccCCCccceEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChH-H
Q 001405 215 ESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQ-T 293 (1083)
Q Consensus 215 ~~~yLlaI~e~~~~~~~~~~~~~~~~~~~~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~-~ 293 (1083)
.+.-++|+++.+.. -..+||+|.+|..+|++++++|.|+..|..+.+.|.-+.|-||+++...... .
T Consensus 102 ~~~v~~~v~e~r~~------------~~~~Ig~~~~~~~~~q~~l~~f~dst~y~~v~~~l~i~s~~ei~i~~~~~a~~~ 169 (867)
T KOG0220|consen 102 SPSVIVAVVEGRGL------------ARGEIGMASIDLKNPQIILSQFADSTTYAKVITKLKILSPLEIIISNTACAVGN 169 (867)
T ss_pred CCceEEEEEecCCc------------ccceeEEEEecCCCCceehhhhhccchhHHHHhHhhccChhheeecccccccch
Confidence 34568888886542 1238999999999999999999999999999999999999999998643321 1
Q ss_pred HHHHH-HhcCCCCcceeeecCccccccchhHHHHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHH
Q 001405 294 EKMLL-AYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQAL 372 (1083)
Q Consensus 294 ~k~l~-~~~~~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al 372 (1083)
.+++. .......++.++..++.||+...+++.+.+++... ....++++++ ..++++|+
T Consensus 170 skl~~~~~~e~~~~v~~~~~s~k~fns~~gl~~i~~~~~~~--------------------~s~vle~i~~-k~~al~a~ 228 (867)
T KOG0220|consen 170 SKLLFTLITENFKNVNFTTISRKYFNSTKGLEYIEQLCIAE--------------------FSTVLEEIQS-KTYALGAA 228 (867)
T ss_pred HHHHHHHHhhcccccceeehhhhhcCchhhHHHHHHHHhhh--------------------hHHHHHHHHH-HHHHHHHH
Confidence 23322 22233457788888999999999999988877541 1123445555 36899999
Q ss_pred HHHHHHHHHhccchhhccCCCceec--CCCCeEEeCHhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhC
Q 001405 373 ALTIRHLKQFGLERIMCLGASFRSL--SGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTH 450 (1083)
Q Consensus 373 ~all~YL~~~~~~~~l~~~~~~~~~--~~~~~M~LD~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~ 450 (1083)
+++++|++..... +....+++.+ ...+.|.||..+.++|||+.++. -+...+|++++|+|.|++|.|.||..+++
T Consensus 229 a~llky~~~~~~~--~~~~~slri~~~gs~nT~~id~~~~~~lelV~~~~-~kn~~~l~~vl~~T~t~~g~r~lRssilq 305 (867)
T KOG0220|consen 229 AALLKYVEEIQSS--VYAPKSLRICFQGSENTAMIDSSSAQSLELVINNQ-YKNNHTLFGVLNYTKTPGGYRRLRSSILQ 305 (867)
T ss_pred HHHHHHHHHHHHh--hhccceeEEEeecccceeeeecccccceEEechhh-hhcccceeeeeeeeecccchhhHHhhhcc
Confidence 9999999987542 2233444433 35678999999999999999864 45567999999999999999999999999
Q ss_pred cCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcC----
Q 001405 451 PLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRT---- 526 (1083)
Q Consensus 451 PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~---- 526 (1083)
||+|...|+.|++|+++|..++ .+...++..+++.+|+++++++.....
T Consensus 306 pl~d~~ti~~rleaiqeL~a~~---------------------------~L~~~Lr~~~k~~~dld~~~s~~~~~~~~~~ 358 (867)
T KOG0220|consen 306 PLTDIETINMRLEAIQELLADE---------------------------ELFFGLRSVIKRFLDLDQLLSVLVQIPTQDT 358 (867)
T ss_pred cccchhhhhHHHHHHHHHhcCc---------------------------hHhhhhHHHHhhhhhHHHHHHHHHhhhhHHh
Confidence 9999999999999999998753 456678889999999999998866432
Q ss_pred CC-hhHHH----HHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhhHHHHHHHHHHHhhhccC
Q 001405 527 AT-PSEFI----AVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGD 601 (1083)
Q Consensus 527 ~~-~~d~~----~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 601 (1083)
+. +...+ .+..++ .....++.. .....+.++......+...........+.+.||.+.....+
T Consensus 359 i~~~~s~I~~~~~Lk~tL-~lv~~~~~a-----------l~~~~s~~~~e~~~~~~~~r~~~i~~~i~e~I~dd~l~a~~ 426 (867)
T KOG0220|consen 359 VNAAESKINNLIYLKHTL-ELVDPLKIA-----------LKNCNSNLLREYYGSFKDKRFGIILEKIKEVINDDALYAKG 426 (867)
T ss_pred hhcchhHHHHHHHHHHHH-HHHHHHHHH-----------HhhchhHHHHHHHHHhcchHHHHHHHHHHHHhhHHHHhccc
Confidence 11 11111 111111 001111110 01112445555544443322222334455678877764322
Q ss_pred -----cccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeeEecCceEEEEcccC------CCCCCcE
Q 001405 602 -----LLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPAN------FKVPLNW 670 (1083)
Q Consensus 602 -----~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~iev~~~------~~~p~~~ 670 (1083)
.++.+.++.+.+..||..|..+.++.+++.....++.+.+.+ ++.....+..||.+.++.+ .++|..|
T Consensus 427 ~l~~~~qkcyAvks~i~~~LDiaR~ty~ei~~~~~~~i~~l~E~~~~-nl~~~f~sarGF~~ri~~~~~~~~~~~lP~~f 505 (867)
T KOG0220|consen 427 CLNLRTQKCYAVKSNINGFLDIARRTYTEIVDDIAGMISQLGEKFSL-NLRLSFSSARGFFIRITTDCIALPSDTLPSEF 505 (867)
T ss_pred hhhhhccceeeecccccHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-cccccccccccEEEEeeccccccccccCchhh
Confidence 256788999999999999999999999998888888888743 4555555556666666654 3589999
Q ss_pred EEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcc
Q 001405 671 AKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVR 750 (1083)
Q Consensus 671 ~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~~~~~ 750 (1083)
+.++..+++++|++..+.+.++++.+.-+++......+...+++.+..+.+.+..+.++++-||+|+|||......+|++
T Consensus 506 i~~~~~~~~~~~~s~~~ik~N~Rlk~~~~E~~l~te~~v~~lld~i~~~I~~L~~iae~~~~lD~l~sfa~~~~~~~y~~ 585 (867)
T KOG0220|consen 506 IKISKVKNSYSFTSADLIKMNERLKEVLREIFLMTEMIVCKLLDEIYEHISCLYKLAEAVSMLDMLCSFAHACTLSDYVR 585 (867)
T ss_pred hhhhhhcceeeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccccccc
Q 001405 751 PVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSA 830 (1083)
Q Consensus 751 P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~ 830 (1083)
|+|.+ .+.|++||||+|++...+++|-||..++ ....+.+|||||||||||||||+|++++|||+||||||.++
T Consensus 586 P~fT~-----slaI~qGRHPILe~i~~ek~i~N~t~~t-~~s~f~IITGPNMsGKSTYLKQvAl~~IMAQIGc~IPA~Ya 659 (867)
T KOG0220|consen 586 PEFTD-----SLAIKQGRHPILEKISAEKPIANNTYVT-EGSNFLIITGPNMSGKSTYLKQVALCQIMAQIGSYVPAEYA 659 (867)
T ss_pred cccCC-----ceeeccCCCchhhhhcccCcccCcceee-cccceEEEECCCCCcchHHHHHHHHHHHHHHhccCcchhhc
Confidence 99977 4899999999999988888999999998 45679999999999999999999999999999999999999
Q ss_pred ccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001405 831 ELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910 (1083)
Q Consensus 831 ~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~ 910 (1083)
.+++|++||+|||..|++...-|+|+.||++++.|+..++..+||+|||++|||++.+|.+|.|++.|++.+ ....+++
T Consensus 660 S~pIf~RIFtRmg~nDele~NsS~F~sEMke~A~Ilq~a~~~SLiVlDELgR~TSteeGiaityAvCE~lL~-LkayTfl 738 (867)
T KOG0220|consen 660 SFRVFKRIFTRMGTNDELERNSSTFMSEMKEAAYILQNANKNSLIVLDELGRGTSTEEGIAITYAVCEYLLS-LKAYTFL 738 (867)
T ss_pred cchHHHHHHHHhcCchhhhhchhHHHHHHHHHHHHHHhCCcCcEEEEhhhccCCccccchhhHHHHHHHHHH-hhHhHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998 7899999
Q ss_pred EeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceee-eEeecCCCC-CCcHHHHHHHHCCCCHHHHHHHHH
Q 001405 911 VTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTY-LYKVVPGVS-ESSFGFKVAQLAQLPPSCISRATV 988 (1083)
Q Consensus 911 ~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f-~ykl~~G~~-~~Sygi~vA~lag~p~~vi~~A~~ 988 (1083)
+||+.+++.++..+|. |.+|||.+... ++...+ .|+|..|.. +.-||+++|++.-+|.+|++.|+.
T Consensus 739 ATHFldIa~lan~~pa-VdnlHF~~q~~-----------eNssk~~k~kLsrg~~~~~~yG~~~vE~s~iPd~i~e~a~~ 806 (867)
T KOG0220|consen 739 ATHFLDIAAIANYYPA-VDNLHFLVQTD-----------ENSSKNKKYKLSRGLTEEKNYGLKAAEVSSLPDSIVEDAKE 806 (867)
T ss_pred HHHHHHHHHHhhcCcc-ccceeeeeeec-----------ccchhhhhhhhhhhhhhcccccceEEEEecCCHHHHHhhhH
Confidence 9999999999999997 99999987652 233333 699999976 689999999999999999999999
Q ss_pred HHHHHHHHHhhhh
Q 001405 989 IAAKLEAEVSSRV 1001 (1083)
Q Consensus 989 ~~~~l~~~~~~~~ 1001 (1083)
+.-++..+.....
T Consensus 807 ~~t~i~A~v~~~~ 819 (867)
T KOG0220|consen 807 ITTQITAQILQNQ 819 (867)
T ss_pred HHHHHHHHHHhhc
Confidence 9999988876433
No 8
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=100.00 E-value=2.4e-68 Score=660.42 Aligned_cols=502 Identities=19% Similarity=0.323 Sum_probs=426.4
Q ss_pred hhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHHHH
Q 001405 429 LHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTS 508 (1083)
Q Consensus 429 ~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 508 (1083)
-.+-++|.|++|+|+|++ ++|+.|++.|++||+.|+++... +.......
T Consensus 16 ~~l~~~~~t~~Gk~~l~~--l~P~~~~~~i~~~l~~~~e~~~~-----------------------------~~~~~~~~ 64 (782)
T PRK00409 16 EQLKTFAASELGKEKVLQ--LDPETDFEEVEELLEETDEAAKL-----------------------------LRLKGLPP 64 (782)
T ss_pred HHHHhHcCCHHHHHHHHc--CCCCCCHHHHHHHHHHHHHHHHH-----------------------------HHhcCCCC
Confidence 345678999999999999 59999999999999999999642 11112235
Q ss_pred hCCCCCHHHHHHHHHhcC-CChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhhHHH
Q 001405 509 LGRSPDIQRGITRIFHRT-ATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAK 587 (1083)
Q Consensus 509 L~~i~DlERll~ri~~~~-~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~ 587 (1083)
|++++|++|++.|+..+. .++.|+..+.+.+.. ...+++... .. ......+.|..+...+.. +..
T Consensus 65 l~~~~Di~~~l~r~~~g~~l~~~eL~~i~~~l~~-~~~l~~~l~------~~-~~~~~~~~L~~~~~~l~~------~~~ 130 (782)
T PRK00409 65 FEGVKDIDDALKRAEKGGVLSGDELLEIAKTLRY-FRQLKRFIE------DL-EEEEELPILEEWVAKIRT------LPE 130 (782)
T ss_pred CCCCccHHHHHHHHhCCCCCCHHHHHHHHHHHHH-HHHHHHHHH------hc-ccccchhHHHHHHHcCcC------cHH
Confidence 788999999999999754 789999888776654 344444310 00 000012455555544321 122
Q ss_pred HHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc-c--eeeEecCceEEEEcccCC
Q 001405 588 LLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRN-L--EFMSVSGITHLIELPANF 664 (1083)
Q Consensus 588 ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~--~~~~~~~~~~~iev~~~~ 664 (1083)
+...|+..... .+.++++++++|+.+|..+.++++++.+.+.++.+..+... + .+.+..+++|+|+|+.++
T Consensus 131 l~~~i~~~id~------~g~i~d~aS~eL~~iR~~~~~~~~~i~~~l~~~~~~~~~~~~L~d~~it~r~~r~~i~vk~~~ 204 (782)
T PRK00409 131 LEQEIHNCIDE------EGEVKDSASEKLRGIRRQLRRKKSRIREKLESIIRSKSLQKYLQDTIITIRNDRYVLPVKAEY 204 (782)
T ss_pred HHHHHHHHhCC------CCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEECCEEEEEechhh
Confidence 33333332221 24688999999999999999999999999999888766432 3 567788899999999875
Q ss_pred --CCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001405 665 --KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATL 742 (1083)
Q Consensus 665 --~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~ 742 (1083)
.+|+.|+..|+++.+.|+.|.++.++++++.+++.++...+..++.+|...+.++...|..+.+.+++|||++|+|.+
T Consensus 205 ~~~~~g~v~~~s~sg~t~y~ep~~~~~ln~~l~~l~~~~~~~~~~il~~l~~~i~~~~~~l~~~~~~l~~lD~l~a~a~~ 284 (782)
T PRK00409 205 KHAIKGIVHDQSSSGATLYIEPQSVVELNNEIRELRNKEEQEIERILKELSAKVAKNLDFLKFLNKIFDELDFIFARARY 284 (782)
T ss_pred hccCCCceeeEECCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888889999989888888899999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc
Q 001405 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG 822 (1083)
Q Consensus 743 a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g 822 (1083)
|...+||+|.|++++ .+.++++|||+++. +.+||||+.++ ..+++++|||||||||||+||+||++++|+|+|
T Consensus 285 a~~~~~~~P~~~~~~---~i~l~~~rHPll~~---~~~Vpndi~l~-~~~~~~iITGpN~gGKTt~lktigl~~~maq~G 357 (782)
T PRK00409 285 AKALKATFPLFNDEG---KIDLRQARHPLLDG---EKVVPKDISLG-FDKTVLVITGPNTGGKTVTLKTLGLAALMAKSG 357 (782)
T ss_pred HHHCCCccceEcCCC---cEEEcCcCCceecc---CceECceeEEC-CCceEEEEECCCCCCcHHHHHHHHHHHHHHHhC
Confidence 999999999998765 79999999999964 67999999998 457899999999999999999999999999999
Q ss_pred ccccccc-cccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001405 823 SFVPASS-AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901 (1083)
Q Consensus 823 ~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~ 901 (1083)
+||||.. +.++++++||+++|..+++..+.|+|+.+|++++.++..+++++||||||||+||||.++.+++.++++++.
T Consensus 358 ~~vpa~~~~~i~~~~~i~~~ig~~~si~~~lStfS~~m~~~~~Il~~~~~~sLvLlDE~~~GtDp~eg~ala~aile~l~ 437 (782)
T PRK00409 358 LPIPANEPSEIPVFKEIFADIGDEQSIEQSLSTFSGHMTNIVRILEKADKNSLVLFDELGAGTDPDEGAALAISILEYLR 437 (782)
T ss_pred CCcccCCCccccccceEEEecCCccchhhchhHHHHHHHHHHHHHHhCCcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999995 789999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHH
Q 001405 902 EHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPS 981 (1083)
Q Consensus 902 ~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~ 981 (1083)
+ .|+++|++||++++..++...++ |.+++|.+ | .+.+.|+|++..|++++||||+||+++|+|++
T Consensus 438 ~-~~~~vIitTH~~el~~~~~~~~~-v~~~~~~~----------d---~~~l~~~Ykl~~G~~g~S~a~~iA~~~Glp~~ 502 (782)
T PRK00409 438 K-RGAKIIATTHYKELKALMYNREG-VENASVEF----------D---EETLRPTYRLLIGIPGKSNAFEIAKRLGLPEN 502 (782)
T ss_pred H-CCCEEEEECChHHHHHHHhcCCC-eEEEEEEE----------e---cCcCcEEEEEeeCCCCCcHHHHHHHHhCcCHH
Confidence 7 69999999999999998877776 88888765 2 45799999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhh
Q 001405 982 CISRATVIAAKLEAEVSSRVQN 1003 (1083)
Q Consensus 982 vi~~A~~~~~~l~~~~~~~~~~ 1003 (1083)
||++|++++.+-..+++..++.
T Consensus 503 ii~~A~~~~~~~~~~~~~li~~ 524 (782)
T PRK00409 503 IIEEAKKLIGEDKEKLNELIAS 524 (782)
T ss_pred HHHHHHHHHhhhhhHHHHHHHH
Confidence 9999999999988888888877
No 9
>KOG0221 consensus Mismatch repair ATPase MSH5 (MutS family) [Replication, recombination and repair]
Probab=100.00 E-value=3.1e-67 Score=586.95 Aligned_cols=707 Identities=21% Similarity=0.300 Sum_probs=518.6
Q ss_pred CceEEEEEeecCCCcccccCccCCCccceEEEEEEEcccCcEEE-EEecCchhHHHHHHHHhccCccEEEeCCCCChHHH
Q 001405 216 SNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVY-GEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTE 294 (1083)
Q Consensus 216 ~~yLlaI~e~~~~~~~~~~~~~~~~~~~~iGIa~vDvsTGe~~~-~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~ 294 (1083)
.-.++||.+... ..|++++|.++..+.+ .+..|.....-+...|-..+|.-++-... +.+
T Consensus 48 ~Eivlcv~f~~G----------------~LG~ayyd~s~~tlk~m~d~~~~~~~~~l~r~ldd~~p~s~~~~~~---qd~ 108 (849)
T KOG0221|consen 48 AEIVLCVLFNSG----------------YLGIAYYDTSDSTLKFMPDAPDHESLKLLQRVLDDINPQSVVTSAK---QDE 108 (849)
T ss_pred hhEEEEEEecCC----------------eeeeEeeeccchHHHhcCCchhhhHHHHHHHHhhccCchhhhhhHh---hhH
Confidence 457899988652 7999999999998844 33344445566777788888887765322 222
Q ss_pred HHHHHhcC--CCCcceeeecCccccccchhH--HHHHHHhhcc--cCCccCcCc-ccCCCccccC-CCc-------chhh
Q 001405 295 KMLLAYAG--PASNVRVECASRDCFIGGGAL--AEVMSLYENM--GEDTLSNNE-DQNMDVPEQG-NHR-------SAIE 359 (1083)
Q Consensus 295 k~l~~~~~--~~~~~~v~~~~~~~F~~~~~~--~~l~~~~~~~--~~~~~~~~~-~~~~~~~~~~-~~~-------~~l~ 359 (1083)
.++ .+.+ +.....-.+.+.+-|.+.... +.-++..... +..++.-.. ..+....... ..+ ..+.
T Consensus 109 ~~i-~fl~~~~s~~~vp~~~~~~if~~~~t~~~ei~k~~~l~~~~~f~p~~l~~~~~~~f~~s~i~~D~l~t~~~~~~it 187 (849)
T KOG0221|consen 109 NMI-RFLGKLASQEHVPPKRPEIIFLPSVTFGLEISKQRLLSGNYSFIPDALTATEKILFLSSIIPFDCLLTEEDKYIIT 187 (849)
T ss_pred HHH-HHhccCCccccCCCCCcceeeccchhhHHHHHHHHhcCCccccChHHHhhhHHhhhhccccccccccCCCCceEEE
Confidence 222 2222 221211223445556543221 1111110000 000000000 0000000000 000 0000
Q ss_pred hccCCcHHHHHHHHHHHHHHHHhccchhhc------cCCCceecCCCCeEEeCHhhHhhccceeecCC------CCcc-c
Q 001405 360 GIMNMPDLAVQALALTIRHLKQFGLERIMC------LGASFRSLSGSMEMTLSANTLQQLEVLRNNSN------GSEY-G 426 (1083)
Q Consensus 360 ~i~~~~~~a~~Al~all~YL~~~~~~~~l~------~~~~~~~~~~~~~M~LD~~Tl~nLEI~~n~~d------gs~~-g 426 (1083)
.+.-.-+.+.+|+|+++.++....+...+. ....++.|...+.|.||.+|++.|.||+.... +-+. -
T Consensus 188 ~~~~~i~~~~r~~g~ll~fl~~~rigv~l~~~~v~~pI~gik~f~l~~lv~iD~nTisaL~Ifp~e~~~~~~k~~~~~g~ 267 (849)
T KOG0221|consen 188 KMRFDIEAVVRALGGLLKFLGRRRIGVELEDYNVSVPILGIKKFMLTHLVNIDQNTISALQIFPSESHPSKVKSGLKEGL 267 (849)
T ss_pred eeccchHHHHHhhhhHHhhcccceeeeeeccccccccccceeEEeecceeeeccchHHHHHhcccccccchhhhhhhcch
Confidence 000011467899999999998765443221 12356677788889999999999999987542 1122 3
Q ss_pred cHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHH
Q 001405 427 TLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVL 506 (1083)
Q Consensus 427 SL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~ 506 (1083)
|||+++|+|....|+|+||.|+.+|++|..+|..||++|.+|+.. +...+.+.+.
T Consensus 268 Slf~l~n~c~s~~g~k~Lr~Wf~nPttd~~~l~sR~~~i~~fl~~-------------------------qNa~~~~~Ls 322 (849)
T KOG0221|consen 268 SLFGLLNRCHSKWGEKLLRLWFTNPTTDLGELSSRLDVIQFFLLP-------------------------QNADMAQMLS 322 (849)
T ss_pred hHHHHHHHHhhHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcc-------------------------hhhHHHHHHH
Confidence 999999999999999999999999999999999999999999753 2336677788
Q ss_pred HHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhh-chhhHHHHHHHHHhcCCchhhhhH
Q 001405 507 TSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS-KTLHSALLKRLILTASSPAVIGKA 585 (1083)
Q Consensus 507 ~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~-~~~~s~lL~~l~~~~~~~~~~~~~ 585 (1083)
+.|++++|+--++.|+..++++..+|..++..+..+...++ ++-..+. +.+. ....+.++..+
T Consensus 323 ~~lgr~k~~~~~~~~~~sg~t~l~~W~~~~stv~~~~~i~~-~~rslp~--s~~~~~~~~~~~~~~l------------- 386 (849)
T KOG0221|consen 323 RLLGRIKNVPLILKRMKSGHTKLSDWQVLYSTVYSALGIRD-ACRSLPQ--SIQLFRDIAQEFSDDL------------- 386 (849)
T ss_pred HHHhhcccHHHHHHHHhcCCceechHHHHHHHHHHHHHHHH-HHHhCcc--chhhhhHHHHHHHHHH-------------
Confidence 89999999999999999999999999888877765443332 2111000 0000 00111122221
Q ss_pred HHHHHHHHHHhhhc-cCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cceeeEecCceEEEEccc
Q 001405 586 AKLLSTVNKEAADQ-GDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMR--NLEFMSVSGITHLIELPA 662 (1083)
Q Consensus 586 ~~ll~~l~~~~~~~-~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~iev~~ 662 (1083)
..++..+..-.... +..++.+.+.+|+|++||+.|..+..+..-+.+..++....++.+ +...+++.-.+|++.+|.
T Consensus 387 ~eia~~~g~vIdF~~S~~~~r~Tv~~giD~elDE~r~~y~~lp~~Lt~vAr~e~~~L~~~~psv~~VYIPliGfllsipr 466 (849)
T KOG0221|consen 387 HEIASLIGKVIDFEGSLAENRFTVLPGIDPELDEKRRRYMGLPSFLTEVARKELENLDSRIPSVSVVYIPLIGFLLSIPR 466 (849)
T ss_pred HHHHHHhhheeccccccccceEEecCCCChHHHHHHHHHccchHHHHHHHHHHHHhhCCCCCceeEEEeeceeeEEeccc
Confidence 11221111111111 112467889999999999999999999988888888777777654 566788888999999987
Q ss_pred CCC--CC----CcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Q 001405 663 NFK--VP----LNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCL 736 (1083)
Q Consensus 663 ~~~--~p----~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l 736 (1083)
... .. ..|.....+....+|++....++-+.+.++.-++...+..++-.+-.++......+.++....++||+|
T Consensus 467 l~~~~~~~d~~~~~~~mf~s~E~l~~rnart~eLD~~~GDIy~~i~D~et~i~~~Lq~qvl~rk~~lt~~l~laSrldvL 546 (849)
T KOG0221|consen 467 LPSMVEASDFENGLDFMFLSEEKLHYRNARTKELDALLGDIYCEIRDQETLIMYQLQCQVLARKAVLTRVLDLASRLDVL 546 (849)
T ss_pred ccchhhcCCcccchHHHhcccceeEeecccHHhHHHHhhhHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 432 11 246666666667799999999999988888878877777888888888888888999999999999999
Q ss_pred HHHHHHhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 737 HALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 737 ~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
+|||..|.+++|.||.++++. ..+.|.+||||+.+. ..+.||||++..+-++|++.+|||||.||||.|||++|+++
T Consensus 547 ls~a~~aa~~gy~~P~lv~e~--~il~I~ngrh~l~e~-~~dtfvPNst~iggdkgri~vITGpNasGKSiYlkqvgliv 623 (849)
T KOG0221|consen 547 LSLASAAADYGYSRPRLVPEV--LILRIQNGRHPLMEL-CADTFVPNSTEIGGDKGRIKVITGPNASGKSIYLKQVGLIV 623 (849)
T ss_pred HHHHHHHHhcCCCCCccccHH--HHHHHHcCChhHHHH-HHHhcCCCceeecCCCceEEEEeCCCCCCceEEEeechhhh
Confidence 999999999999999999865 457899999999875 56889999999999999999999999999999999999999
Q ss_pred HHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 001405 817 IMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYAT 896 (1083)
Q Consensus 817 ~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~i 896 (1083)
+|+|+|+||||+.++++++|+||+||+..+.+..++|||+....+++.+++.|+..||+|+||.|.||++.+|.++..++
T Consensus 624 fLahIGsFVPAe~A~IGivDrI~tri~s~esv~~gqSTFmiD~~Qva~aLr~AT~~SLvlIDEfGKGT~tedGlsLlasv 703 (849)
T KOG0221|consen 624 FLAHIGSFVPAEEAEIGIVDRIFTRIHSCESVSLGQSTFMIDLNQVAKALRNATAQSLVLIDEFGKGTNTEDGLSLLASV 703 (849)
T ss_pred HHHhhccccchhhhhcchHHHHHHHhhhhhhhhhhhhHHHHhHHHHHHHHHHhhcCcEEEEhhccCCccccccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCC--cEEEEEeCchHHHHHh--hhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHH
Q 001405 897 LDYLLEHKK--CMVLFVTHYPKIADIK--TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKV 972 (1083)
Q Consensus 897 l~~l~~~~~--~~vl~~TH~~~l~~l~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~v 972 (1083)
+.++..... .+|+++||++++.... ...| .+..|.|.+.. .+ .+.++|+|++.+|.+..|||+.+
T Consensus 704 m~~w~~rg~~~PrifvcThfheL~ne~~L~~n~-i~qfltm~vlr-------~~---ge~I~flyrv~~gl~k~sfal~~ 772 (849)
T KOG0221|consen 704 MRHWLARGPTCPRIFVCTHFHELVNEQLLPQNP-IVQFLTMEVLR-------ED---GEDIVFLYRVCEGLAKASFALHT 772 (849)
T ss_pred HHHHHhcCCCCCeEEEeccHHHhhhhccCCcch-hhhhhhHHHHH-------hc---cCCeEEEEEeccchhhhcccchh
Confidence 999877322 4799999999998632 1222 25566666543 12 57899999999999999999999
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH
Q 001405 973 AQLAQLPPSCISRATVIAAKLEAEV 997 (1083)
Q Consensus 973 A~lag~p~~vi~~A~~~~~~l~~~~ 997 (1083)
|+.+|+|+.||.||++++..++..-
T Consensus 773 ak~~glp~~vV~Ra~~v~~ai~sg~ 797 (849)
T KOG0221|consen 773 AKQAGLPDKVVARAKEVSDAIRSGK 797 (849)
T ss_pred HhhcCCCHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999887543
No 10
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=100.00 E-value=5.7e-63 Score=610.70 Aligned_cols=496 Identities=22% Similarity=0.317 Sum_probs=421.6
Q ss_pred hhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHHHH
Q 001405 429 LHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTS 508 (1083)
Q Consensus 429 ~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~ 508 (1083)
=.+.++|.|++|++++++ +.|+.|.+.|+.||+.|+++.... . .-.
T Consensus 16 ~~l~~~~~t~~gk~~~~~--l~P~~~~~~i~~~l~~~~e~~~~~------------------------------~--~~~ 61 (771)
T TIGR01069 16 ENLLKQTFTPLGKEDAIG--LKPPKSVEESKEIIIKLTALGSIE------------------------------N--NVR 61 (771)
T ss_pred HHHHHHcCCHHHHHHHhc--CCCCCCHHHHHHHHHHHHHHHHhh------------------------------c--cCC
Confidence 356889999999999999 899999999999999999997521 0 125
Q ss_pred hCCCCCHHHHHHHHHhcC-CChhH-HHHHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhhHH
Q 001405 509 LGRSPDIQRGITRIFHRT-ATPSE-FIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAA 586 (1083)
Q Consensus 509 L~~i~DlERll~ri~~~~-~~~~d-~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~ 586 (1083)
|..++|+++++.|+..+. .++.+ |..+.+.+.. ...++.+. . .. ...+.|..+...... ..
T Consensus 62 l~~~~di~~~l~r~~~g~~l~~~e~l~~i~~~l~~-~~~l~~~l-~-----~~----~~~~~L~~~~~~l~~------~~ 124 (771)
T TIGR01069 62 FFGFEDIRELLKRAELGGIVKGLEYILVIQNALKT-VKHLKVLS-E-----HV----LDLEILFHLRLNLIT------LP 124 (771)
T ss_pred cCCCccHHHHHHHHhcCCcCChHHHHHHHHHHHHH-HHHHHHHH-h-----cc----ccchHHHHHHhcCCC------cH
Confidence 788999999999998765 67867 8888766654 34455441 1 00 012345555443321 12
Q ss_pred HHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC---cceeeEecCceEEEEcccC
Q 001405 587 KLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMR---NLEFMSVSGITHLIELPAN 663 (1083)
Q Consensus 587 ~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~---~~~~~~~~~~~~~iev~~~ 663 (1083)
.+...|..... ..+.++++++++|+.+|..+..+++++.+.+.++.+..+.. .-.+++..+.+|+|+|+.+
T Consensus 125 ~l~~~i~~~id------~~g~i~d~aS~~L~~ir~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~it~r~~r~vipvk~~ 198 (771)
T TIGR01069 125 PLENDIIACID------DDGKVKDGASEELDAIRESLKALEEEVVKRLHKIIRSKELAKYLSDTIVTIRNGRYVLPLKSG 198 (771)
T ss_pred HHHHHHHHHhC------CCCEECCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhhcCceEEEECCEEEEEeeHH
Confidence 23333333222 23467899999999999999999999999999887755432 2346777788999999987
Q ss_pred C--CCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q 001405 664 F--KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALAT 741 (1083)
Q Consensus 664 ~--~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~ 741 (1083)
+ ++|+.++..|+++.+.++.|.++.++++++.+++.+.......++.+|...+.++...|..+.+.+++||+++|+|.
T Consensus 199 ~~~~i~g~v~~~S~sg~t~~~ep~~~~~ln~~l~~l~~~~~~e~~~il~~L~~~i~~~~~~l~~~~~~l~~lD~l~a~a~ 278 (771)
T TIGR01069 199 FKGKIKGIVHDTSSSGETFYIEPQAIVKLNNKLAQLKNEEECEIEKILRTLSEKVQEYLLELKFLFKEFDFLDSLQARAR 278 (771)
T ss_pred HhhcCCCeEEEEeCCCCEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 48988888899998988888889999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc
Q 001405 742 LSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV 821 (1083)
Q Consensus 742 ~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~ 821 (1083)
+|...+||+|.+.+.+ .+.++++|||+++. ..+||||+.+.- ..++++||||||||||||||+|+++++|+|.
T Consensus 279 ~a~~~~~~~P~~~~~~---~i~l~~~rhPll~~---~~~vp~di~l~~-~~~~liItGpNg~GKSTlLK~i~~~~l~aq~ 351 (771)
T TIGR01069 279 YAKAVKGEFPMPSFTG---KIILENARHPLLKE---PKVVPFTLNLKF-EKRVLAITGPNTGGKTVTLKTLGLLALMFQS 351 (771)
T ss_pred HHHHCCCeeceecCCC---CEEEccccCceecC---CceEeceeEeCC-CceEEEEECCCCCCchHHHHHHHHHHHHHHh
Confidence 9999999999997765 79999999999963 469999999873 2479999999999999999999999999999
Q ss_pred cccccccc-cccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 822 GSFVPASS-AELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 822 g~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
|++||+.. ..++++++++.+++..+++..+.|+|+.+|.+++.|+..+++++||||||||+|||+.++.++++++++++
T Consensus 352 G~~Vpa~~~~~~~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l 431 (771)
T TIGR01069 352 GIPIPANEHSEIPYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILSKTTENSLVLFDELGAGTDPDEGSALAISILEYL 431 (771)
T ss_pred CCCccCCccccccchhheeeecChHhHHhhhhhHHHHHHHHHHHHHHhcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999985 68999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCH
Q 001405 901 LEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPP 980 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~ 980 (1083)
.+ .|+++|++||++++..++...++ |.+++|.+ | .+.+.|+|+|.+|++++||||+||+++|+|+
T Consensus 432 ~~-~g~~viitTH~~eL~~~~~~~~~-v~~~~~~~----------d---~~~l~p~Ykl~~G~~g~S~a~~iA~~~Glp~ 496 (771)
T TIGR01069 432 LK-QNAQVLITTHYKELKALMYNNEG-VENASVLF----------D---EETLSPTYKLLKGIPGESYAFEIAQRYGIPH 496 (771)
T ss_pred Hh-cCCEEEEECChHHHHHHhcCCCC-eEEeEEEE----------c---CCCCceEEEECCCCCCCcHHHHHHHHhCcCH
Confidence 87 79999999999999988877776 88888875 2 4679999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q 001405 981 SCISRATVIAAKLEAEVSSRVQN 1003 (1083)
Q Consensus 981 ~vi~~A~~~~~~l~~~~~~~~~~ 1003 (1083)
+||++|+++++..+.++++.++.
T Consensus 497 ~ii~~A~~~~~~~~~~~~~li~~ 519 (771)
T TIGR01069 497 FIIEQAKTFYGEFKEEINVLIEK 519 (771)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999999888877
No 11
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=100.00 E-value=1.4e-48 Score=421.71 Aligned_cols=233 Identities=44% Similarity=0.780 Sum_probs=199.9
Q ss_pred CccceeecCCCcceeeeecCccceeeecc-cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccc
Q 001405 748 FVRPVFVDDHEPVQIHICSGRHPVLDTIL-LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVP 826 (1083)
Q Consensus 748 ~~~P~~~~~~~~~~i~i~~~rhP~l~~~~-~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp 826 (1083)
||||+|.++. .+.+++||||+++... ++++||||+.++-+...+++||||||||||||||+||.+++|||+|+|||
T Consensus 1 y~~P~~~~~~---~l~i~~~~HPll~~~~~~~~~v~ndi~~~~~~~~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VP 77 (235)
T PF00488_consen 1 YCRPKISEEK---SLKIKEGRHPLLEEKLENKKFVPNDIELSNNKSRIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVP 77 (235)
T ss_dssp EB-EEEESTT---EEEEEEE--TTHHHHTTTSSC--EEEEESSSSSSEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BS
T ss_pred CcccEEcCCC---CEEEEeccCCEEeccccCCceecceeecCCCceeEEEEeCCCccchhhHHHHHHHHhhhhhcCceee
Confidence 8999999987 8999999999999864 67899999999866557999999999999999999999999999999999
Q ss_pred ccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001405 827 ASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC 906 (1083)
Q Consensus 827 ~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~ 906 (1083)
|+.+.++++|+|+++++..|++..+.|+|+.||.+++.|+..+++++|||+||+++||++.+|.+++++++++|.+..++
T Consensus 78 A~~~~i~~~d~I~t~~~~~d~~~~~~S~F~~E~~~~~~il~~~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~ 157 (235)
T PF00488_consen 78 AESAEIPIFDRIFTRIGDDDSIESGLSTFMAEMKRLSSILRNATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGC 157 (235)
T ss_dssp SSEEEEE--SEEEEEES---SSTTSSSHHHHHHHHHHHHHHH--TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-
T ss_pred ecccccccccEEEeecccccccccccccHHHhHHHHHhhhhhcccceeeecccccCCCChhHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999974589
Q ss_pred EEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 001405 907 MVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986 (1083)
Q Consensus 907 ~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A 986 (1083)
.+|++||+++++++....++ |.++||.+... ++.++|+|+|.+|.++.|||+++|+++|+|++||+||
T Consensus 158 ~~i~~TH~~~l~~~~~~~~~-v~~~~~~~~~~-----------~~~~~f~Ykl~~G~~~~S~ai~iA~~~g~p~~II~rA 225 (235)
T PF00488_consen 158 FVIIATHFHELAELLERNPN-VQNYHMEVEED-----------NDSLTFTYKLKEGICSSSYAIEIAKLAGLPEEIIERA 225 (235)
T ss_dssp EEEEEES-GGGGGHHHHSTT-EEEEEEEEEEE-----------TTEEEEEEEEEES--SSTCHHHHHHHTT--HHHHHHH
T ss_pred cEEEEeccchhHHHhhhCcc-ccccceeeeee-----------ccccceeEEEeECCCCCcHHHHHHHHhCcCHHHHHHH
Confidence 99999999999998887776 99999998742 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 001405 987 TVIAAKLEA 995 (1083)
Q Consensus 987 ~~~~~~l~~ 995 (1083)
+++++++++
T Consensus 226 ~~i~~~l~~ 234 (235)
T PF00488_consen 226 KEILKQLEE 234 (235)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999985
No 12
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=4.4e-45 Score=390.15 Aligned_cols=222 Identities=66% Similarity=1.041 Sum_probs=205.9
Q ss_pred eeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhh
Q 001405 762 IHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTR 841 (1083)
Q Consensus 762 i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~ 841 (1083)
|.|+++|||+++....+.+|+||++|++.+|++++|+||||+|||||||+|+++.+++|.|+++|+..+.++++++|+++
T Consensus 1 ~~i~~~rHPlle~~~~~~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~~~~~~~~~~i~~~ 80 (222)
T cd03287 1 ILIKEGRHPMIESLLDKSFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPASSATLSIFDSVLTR 80 (222)
T ss_pred CeeecccCCEEeccCCCCEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcCceEEeccceEEEE
Confidence 46899999999976566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 842 MGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 842 ~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
++..|++..+.|+|+.||++++.++..+++++|+|||||++|||+.++.++++++++++.+..++++|++||+++++++.
T Consensus 81 ~~~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 81 MGASDSIQHGMSTFMVELSETSHILSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred ecCccccccccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999874489999999999999988
Q ss_pred hhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 001405 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986 (1083)
Q Consensus 922 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A 986 (1083)
..+++.+.++||++...+...+..+ +++++|+|||.+|+|+.|||+++|+++|+|++||+||
T Consensus 161 ~~~~~~v~~~~~~~~~~~~~~~~~~---~~~l~~~Ykl~~G~~~~s~a~~~a~~~g~p~~vi~rA 222 (222)
T cd03287 161 RRFEGSIRNYHMSYLESQKDFETSD---SQSITFLYKLVRGLASRSFGLNVARLAGLPKSIISRA 222 (222)
T ss_pred HhcccCeEEEEEEEEEecccccccc---CCcEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 8777669999999987544332223 6789999999999999999999999999999999997
No 13
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1e-44 Score=386.21 Aligned_cols=217 Identities=47% Similarity=0.721 Sum_probs=200.8
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCC
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~ 843 (1083)
++++|||+++...++++||||++|+.++|++++|+||||+|||||+++|+++++|||+|+||||+.+.++++++||++++
T Consensus 2 ~~~~rHPll~~~~~~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~~i~~~~~i~~~~~ 81 (218)
T cd03286 2 FEELRHPCLNASTASSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSMRLSLVDRIFTRIG 81 (218)
T ss_pred cccccCCEEecccCCCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCccccEeccccEEEEecC
Confidence 67999999986666789999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 844 ~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..|++..+.|+|+.||++++.|++.+++++|||||||++||++.++.+++++++++|.+..++++|++||++++......
T Consensus 82 ~~d~~~~~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~~ 161 (218)
T cd03286 82 ARDDIMKGESTFMVELSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFHE 161 (218)
T ss_pred cccccccCcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987338999999999999988777
Q ss_pred ccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHH
Q 001405 924 FTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRA 986 (1083)
Q Consensus 924 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A 986 (1083)
.++ |.++||++......+ .+ +++++|+|||.+|+|++|||+++|+++|+|++||+||
T Consensus 162 ~~~-v~~~~m~~~~~~~~~--~~---~~~~~~~Ykl~~G~~~~s~al~~A~~~g~p~~vi~rA 218 (218)
T cd03286 162 HGG-VRLGHMACAVKNESD--PT---IRDITFLYKLVAGICPKSYGLYVALMAGIPDGVVERA 218 (218)
T ss_pred Ccc-eEEEEEEEEEecccc--CC---CCceEEEEEECcCCCCCcHHHHHHHHhCcCHHHHhcC
Confidence 776 999999987632211 01 4789999999999999999999999999999999997
No 14
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.3e-42 Score=373.04 Aligned_cols=220 Identities=44% Similarity=0.711 Sum_probs=204.2
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCC
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~ 843 (1083)
++++|||+++...+.++|+||++++..++++++|+||||||||||||+|+.+++|+|+|+|||+..+.++++++++++++
T Consensus 2 ~~~~~hpll~~~~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~g~~vpa~~~~~~~~~~il~~~~ 81 (222)
T cd03285 2 LKEARHPCVEAQDDVAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVLMAQIGCFVPCDSADIPIVDCILARVG 81 (222)
T ss_pred ccccCCCEEeccCCCCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHHHHHhCCCcCcccEEEeccceeEeeec
Confidence 68999999997666789999999999889999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 844 ~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..|.+..+.|+|+.+|.+++.+++.+++++|||||||++||++.|+.++++.+++++.+..++++|++||++++.+++++
T Consensus 82 l~d~~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~il~~l~~~~~~~vlisTH~~el~~~~~~ 161 (222)
T cd03285 82 ASDSQLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWAIAEYIATQIKCFCLFATHFHELTALADE 161 (222)
T ss_pred cccchhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHHHHHHHHhcCCCeEEEEechHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999898876458999999999999999988
Q ss_pred ccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHH
Q 001405 924 FTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKL 993 (1083)
Q Consensus 924 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l 993 (1083)
.+. +.++||.+... .. +++++|+|+|.+|+++.|||+++|+++|+|++||+||++++.++
T Consensus 162 ~~~-i~~g~~~~~~~------~~---~~~~~~~Y~l~~G~~~~s~a~~~a~~~g~p~~vi~~A~~~~~~~ 221 (222)
T cd03285 162 VPN-VKNLHVTALTD------DA---SRTLTMLYKVEKGACDQSFGIHVAELANFPKEVIEMAKQKALEL 221 (222)
T ss_pred CCC-eEEEEEEEEEe------CC---CCcEeEEEEEeeCCCCCcHHHHHHHHhCcCHHHHHHHHHHHHhc
Confidence 876 88899876542 11 47899999999999999999999999999999999999999876
No 15
>COG1193 Mismatch repair ATPase (MutS family) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.1e-40 Score=404.49 Aligned_cols=492 Identities=23% Similarity=0.329 Sum_probs=391.2
Q ss_pred hhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHHHHHHh
Q 001405 430 HIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSL 509 (1083)
Q Consensus 430 ~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~L 509 (1083)
.++.++.|+.|.-+|+. +.|..|.+.|+..++-++++...... .+. + -+
T Consensus 15 ~~~~~~~s~~g~~~~~~--l~p~~~~~~i~~~~~e~~~~~~~~~~------~g~------------~-----------~~ 63 (753)
T COG1193 15 LLASYAQSSLGLEELKN--LKPRTDLELIEEELSETAEALDILED------EGL------------P-----------PL 63 (753)
T ss_pred HHHHhccCHHHHHHHHh--cCccccHHHHHHHHHHHHHHHHHHhc------cCC------------C-----------Cc
Confidence 35788999999999987 68999999999999999998753210 000 0 13
Q ss_pred CCCCCHHHHHHHHHh-cCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhhHHHH
Q 001405 510 GRSPDIQRGITRIFH-RTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKL 588 (1083)
Q Consensus 510 ~~i~DlERll~ri~~-~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~l 588 (1083)
..+.|+--.+.|+-. +...+.++..+...+. ....++...-.. ......+...+. .+..+
T Consensus 64 ~~l~~i~~~l~~~e~g~~l~~~el~~i~~~l~-~~~~lkr~~~~~--------e~~~~~~~~~~~----------~~~~l 124 (753)
T COG1193 64 GGLNDVSEALGRLEKGGRLHVEELLEISDFLR-GFRALKRAIKKL--------ERIKRTLALALI----------ELSDL 124 (753)
T ss_pred hhhhhhHHHHHHHhhcccCCHHHHHHHHHHHH-HHHHHHHHHHHh--------hhHHHHHHHhhh----------cchHH
Confidence 344555555555542 3456777666554332 233333220000 000011111111 11122
Q ss_pred HHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--cceeeEecCceEEEEcccCCC-
Q 001405 589 LSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMR--NLEFMSVSGITHLIELPANFK- 665 (1083)
Q Consensus 589 l~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~--~~~~~~~~~~~~~iev~~~~~- 665 (1083)
...++.... +.+.+.+..+++++.+|..+..+..++.+.++.+.+..... .-.+++..+.+|++.++..++
T Consensus 125 ~~~i~~~id------~~g~i~d~as~~l~~ir~~lr~~~~~i~~~l~~~~~~~~~~~L~e~~v~~r~~r~vlpvk~~fk~ 198 (753)
T COG1193 125 ELEINIPID------DDGLIKDRASFELDAIRRQLRDLEEEIRDKLESLIRSKEAKYLQDRIVTTRDGREVLPVKAEFKG 198 (753)
T ss_pred HHHHhhhhc------ccccccccccHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhHhhhhceEeccCCeEEeHHHHHhhh
Confidence 222222211 33457788899999999998877777777666654433111 224567788899999988765
Q ss_pred -CCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhh
Q 001405 666 -VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSR 744 (1083)
Q Consensus 666 -~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~ 744 (1083)
+++..+..++++.+.+..|..+..+++++..+..+-......+++++...+.++.+.+..+...++++|++.|.+.+++
T Consensus 199 ~i~giv~d~sssg~tl~ieP~~vv~l~n~~~~l~~eE~~e~e~il~~lsa~v~~~~~~l~~~~~~~~~lD~i~Ak~~~~~ 278 (753)
T COG1193 199 AIKGIVHDTSSSGATLYIEPRSVVKLNNELRALLVEEDEEEERILRELSALVAPVIPELEILLEIIGELDFIEAKVRYAK 278 (753)
T ss_pred hcCceEeecccccCeeeecchHHHhhccHhhhhhccchHhHHHHHHHHHHHHhhhhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8899999999999999999999999999998876666677788999999999999999999999999999999999999
Q ss_pred cCCCccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccc
Q 001405 745 NKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSF 824 (1083)
Q Consensus 745 ~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~ 824 (1083)
...+++|.|.++. .+.+.+++||++.. .||+++.+..+ -..++|||||++|||+.||+++.+.+|+|.|.+
T Consensus 279 ~~~~v~P~~~~~~---~l~l~~~~HPll~~-----~v~~~i~~~~e-~~~l~ITGpN~GGKtvtLKTlgl~~lm~q~gl~ 349 (753)
T COG1193 279 ALKGVKPDFSNDG---VLELLDARHPLLKE-----DVPNDLELGEE-LDRLIITGPNTGGKTVTLKTLGLLRLMAQSGLP 349 (753)
T ss_pred hhccCCCccCCCc---eEEeccccCccCcc-----ccccccccccc-cceeeEecCCCCcceehHHHHHHHHHHHHcCCC
Confidence 9999999998766 89999999999964 39999999854 357899999999999999999999999999999
Q ss_pred cccccc-ccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001405 825 VPASSA-ELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903 (1083)
Q Consensus 825 vp~~~~-~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~ 903 (1083)
+|+... .+++|+.+|..+|..+++.+.+|||+..|..++.++..+. +|+++||.++||||.+|.+++.++++++.+
T Consensus 350 i~a~~gsei~~F~~i~aDIGDeQsIeqsLSTFSshm~~i~~il~~~d--sLvl~DElg~GTdp~EgaaLai~ile~l~~- 426 (753)
T COG1193 350 IPALEGSELPVFVKIFADIGDEQSIEQSLSTFSSHMTNIVEILEKAD--SLVLFDELGSGTDPDEGAALAIAILEDLLE- 426 (753)
T ss_pred eeccCCCcchhHHHhhhccCcHHHHHHHHhhhHHHHHHHHHHHhhcc--hhHHHHHhhcCCCcchhHHHHHHHHHHHHh-
Confidence 999866 8999999999999999999999999999999999996444 999999999999999999999999999998
Q ss_pred CCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHH
Q 001405 904 KKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCI 983 (1083)
Q Consensus 904 ~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi 983 (1083)
.++.++.+||+.++..++...++ |.|-.|.+ | .+.+.++|++..|+.++||||++|..+|+|..+|
T Consensus 427 ~~~~~~~tTH~~elk~~~~~~~~-v~nas~~f----------d---~etL~ptY~l~~G~~g~S~Af~ia~rlGl~~~ii 492 (753)
T COG1193 427 KPAKIVATTHYRELKALAAEREG-VENASMEF----------D---AETLRPTYRLLEGVPGRSNAFDIALRLGLPEPII 492 (753)
T ss_pred cccceehHhhHHHHHHHHhcchh-hhchhhhh----------h---HHHhhHHHHHhcCCcccchHHHHHHHcCCCHHHH
Confidence 89999999999999998877776 77766653 3 5689999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhh
Q 001405 984 SRATVIAAKLEAEVSSRVQN 1003 (1083)
Q Consensus 984 ~~A~~~~~~l~~~~~~~~~~ 1003 (1083)
++|+...+.....++..+.+
T Consensus 493 e~a~~~~g~~~~~~~~~i~~ 512 (753)
T COG1193 493 EEAKTEFGEEKELLEELIEK 512 (753)
T ss_pred HHHHHhcCchHhHHHHHhhh
Confidence 99999999999999988887
No 16
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=100.00 E-value=4.7e-40 Score=352.08 Aligned_cols=213 Identities=51% Similarity=0.827 Sum_probs=198.1
Q ss_pred eecCccceeeeccc-ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhC
Q 001405 764 ICSGRHPVLDTILL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842 (1083)
Q Consensus 764 i~~~rhP~l~~~~~-~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~ 842 (1083)
|+++|||+++...+ ..+|+||++|+.++ ++++|+||||||||||||+|+++++++|.|+++|+..+.+++++++++++
T Consensus 2 i~~~~hp~~~~~~~~~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~vp~~~~~i~~~~~i~~~~ 80 (216)
T cd03284 2 IEGGRHPVVEQVLDNEPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSFVPASKAEIGVVDRIFTRI 80 (216)
T ss_pred cccccCCEEeeccCCCceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCeeccccceecceeeEeccC
Confidence 78999999998653 67999999999765 89999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 843 ~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+..|++..+.|+|+.+|.+++.++..+++++|+|||||++||++.|+.++++++++++.+..++++|++||+.++.++++
T Consensus 81 ~~~~~ls~g~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~~lD~~~~~~~il~~l~~~~~~~vi~~TH~~~l~~l~~ 160 (216)
T cd03284 81 GASDDLAGGRSTFMVEMVETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAIVEYLHEKIGAKTLFATHYHELTELEG 160 (216)
T ss_pred CchhhhccCcchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCChHHHHHHHHHHHHHHHhccCCcEEEEeCcHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999899999998733899999999999999998
Q ss_pred hccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHH
Q 001405 923 KFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVI 989 (1083)
Q Consensus 923 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~ 989 (1083)
..+. +.++||.+.. + .++++|+|++.+|.++.|||+++|+++|+|++||+||+++
T Consensus 161 ~~~~-v~~~~~~~~~--------~---~~~l~~~ykl~~G~~~~s~a~~~a~~~g~~~~ii~rA~~~ 215 (216)
T cd03284 161 KLPR-VKNFHVAVKE--------K---GGGVVFLHKIVEGAADKSYGIEVARLAGLPEEVIERAREI 215 (216)
T ss_pred cCCC-eEEEEEEEEe--------e---CCeEEEEEEECcCCCCCcHHHHHHHHhCcCHHHHHHHHHh
Confidence 8876 8899998653 2 5689999999999999999999999999999999999986
No 17
>smart00533 MUTSd DNA-binding domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=5.1e-37 Score=348.09 Aligned_cols=305 Identities=32% Similarity=0.483 Sum_probs=246.9
Q ss_pred cccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCCCCCccccchhhHHHHHHH
Q 001405 425 YGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTIVEPQFYYILSS 504 (1083)
Q Consensus 425 ~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 504 (1083)
+||||++||+|+|++|+|+||+|+++|++|.++|++|||+|++|..+. .+...
T Consensus 1 ~~sL~~~l~~~~T~~G~r~L~~wl~~Pl~~~~~I~~R~~~v~~~~~~~---------------------------~l~~~ 53 (308)
T smart00533 1 KGSLFELLNHTKTPMGKRLLRRWLLQPLLDLKEINERLDAVEELVENP---------------------------ELRQK 53 (308)
T ss_pred CCCHHHHHccCCCcHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhCh---------------------------HHHHH
Confidence 489999999999999999999999999999999999999999998642 34566
Q ss_pred HHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhhcccchhhhhhchhhHHHHHHHHHhcCCchhhhh
Q 001405 505 VLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTSKTLHSALLKRLILTASSPAVIGK 584 (1083)
Q Consensus 505 l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~ 584 (1083)
++..|++++|++|++.|+..++.+++||..+++.+..+ ..+.++..... .....+++..+.. . ....
T Consensus 54 l~~~L~~~~Di~~~l~~~~~~~~~~~el~~l~~~l~~~-~~l~~~l~~~~-------~~~~~~~~~~~~~----~-~~~~ 120 (308)
T smart00533 54 LRQLLKRIPDLERLLSRIERGRASPRDLLRLYDSLEGL-KEIRQLLESLD-------GPLLGLLLKVILE----P-LLEL 120 (308)
T ss_pred HHHHHccCCcHHHHHHHHHcCCCCHHHHHHHHHHHHHH-HHHHHHHHhcC-------cHHHHHHHHhhcc----c-hHHH
Confidence 77889999999999999999999999999998887654 34443311100 0011122222110 0 1111
Q ss_pred HHHHHHHHHHHhhhccCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeeEecCceEEEEcccCC
Q 001405 585 AAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF 664 (1083)
Q Consensus 585 ~~~ll~~l~~~~~~~~~~~~~~~i~~g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~iev~~~~ 664 (1083)
+..+.+.++...... ..+.+.+++|++++||.+|+.+.++.+++++.+..+.+.++.+.+++.+....+|+|+||.+.
T Consensus 121 ~~~l~~~~~~~~~~~--~~~~~~i~~~~s~~Ld~lr~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~g~~i~v~~~~ 198 (308)
T smart00533 121 LELLLELLNDDDPLE--VNDGGLIKDGFDPELDELREKLEELEEELEELLKKEREELGIDSLKLGYNKVHGYYIEVTKSE 198 (308)
T ss_pred HHHHHHHhccCCccc--ccCCCeeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceEEeEeccEEEEEEecchh
Confidence 222222222211111 012367899999999999999999999999999999998888777776666667999999863
Q ss_pred --CCCCcEEEeeecCCeEEEeChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 001405 665 --KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATL 742 (1083)
Q Consensus 665 --~~p~~~~~~~~~~~~~r~~~~e~~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~ 742 (1083)
++|+.|+.++++++++||+|+++.++++++.++.+++......+++++.+.+.++...|..+++.+++|||++|+|.+
T Consensus 199 ~~~~~~~~~~~s~s~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~l~~~~~~i~~lD~l~s~a~~ 278 (308)
T smart00533 199 AKKVPKDFIRRSSLKNTERFTTPELKELENELLEAKEEIERLEKEILRELLEKVLEYLEELRALAEALAELDVLLSLATL 278 (308)
T ss_pred hccCChHHHHHhhhcccceeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccceeecCCCcceeeeecCccceeee
Q 001405 743 SRNKNFVRPVFVDDHEPVQIHICSGRHPVLDT 774 (1083)
Q Consensus 743 a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~ 774 (1083)
|...+||+|.|++++ .+.+++||||+++.
T Consensus 279 a~~~~~~~P~i~~~~---~l~i~~~rHPlle~ 307 (308)
T smart00533 279 AAEGNYVRPEFVDSG---ELEIKNGRHPVLEL 307 (308)
T ss_pred HHHCCCcCCeeCCCC---CEEEeeCCCCcccC
Confidence 999999999998865 79999999999974
No 18
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=1.5e-38 Score=336.69 Aligned_cols=201 Identities=40% Similarity=0.666 Sum_probs=187.1
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCC
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~ 843 (1083)
|+++|||+++. ..+++|+||++|+...|++++|+||||||||||||+|+++++|+|+|+|||+..+.++++++|+++++
T Consensus 2 i~~~~hpll~~-~~~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~la~~G~~vpa~~~~l~~~d~I~~~~~ 80 (204)
T cd03282 2 IRDSRHPILDR-DKKNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAIMAQIGCFVPAEYATLPIFNRLLSRLS 80 (204)
T ss_pred cccccCCeEec-cCCcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHHHHHcCCCcchhhcCccChhheeEecC
Confidence 68999999985 45789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 844 ~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..|++..+.|+|+.||+++..++..+++++|+|||||++|||+.++.++++++++++.+ .++++|++||+++++++...
T Consensus 81 ~~d~~~~~~S~fs~e~~~~~~il~~~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 81 NDDSMERNLSTFASEMSETAYILDYADGDSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhcCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999987 69999999999999998877
Q ss_pred ccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCC-CcHHHHHHHHCC
Q 001405 924 FTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSE-SSFGFKVAQLAQ 977 (1083)
Q Consensus 924 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~-~Sygi~vA~lag 977 (1083)
.++ +.++||++... + ++++.|+||+.+|+|. .|||+++||+..
T Consensus 160 ~~~-v~~~~~~~~~~-------~---~~~~~~~ykl~~G~~~~~~~g~~~a~~~~ 203 (204)
T cd03282 160 KSC-VVHLHMKAQSI-------N---SNGIEMAYKLVLGLYRIVDDGIRFVRVLA 203 (204)
T ss_pred CCC-eEEEEEEEEEc-------C---CCceeeEEEEeeCCCCCCccHHHHHHHhh
Confidence 776 99999987641 1 4678999999999999 999999999864
No 19
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=100.00 E-value=3e-38 Score=337.35 Aligned_cols=208 Identities=39% Similarity=0.678 Sum_probs=185.1
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCC
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~ 843 (1083)
|+++|||+++. ..+.+||||+.++-+.+++++|+||||+|||||||+|+.+++++|.|+++|+..+.++++++++++++
T Consensus 2 i~~~rHPll~~-~~~~~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~ 80 (213)
T cd03281 2 IQGGRHPLLEL-FVDSFVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMS 80 (213)
T ss_pred cccccCCEEec-cCCceEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeC
Confidence 68999999986 34679999999985444899999999999999999999999999999999999999999999999999
Q ss_pred cchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeCchHHHHHh
Q 001405 844 ASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH--KKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 844 ~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~--~~~~vl~~TH~~~l~~l~ 921 (1083)
..+++..+.|+|+.+|++++.++..+++++|+|||||++|||+.++.++++++++++.+. .++++|++||+++++...
T Consensus 81 ~~~si~~~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 81 SRESVSSGQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CccChhhccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999998762 135899999999999876
Q ss_pred h--hccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCC
Q 001405 922 T--KFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978 (1083)
Q Consensus 922 ~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~ 978 (1083)
. ..+. +.++||++..+.... .+ .++++|+|||.+|++++|||++||+++|+
T Consensus 161 ~~~~~~~-~~~~~~~~~~~~~~~--~~---~~~~~~~y~l~~G~~~~s~a~~~a~~~g~ 213 (213)
T cd03281 161 LLPERLK-IKFLTMEVLLNPTST--SP---NEDITYLYRLVPGLADTSFAIHCAKLAGI 213 (213)
T ss_pred hhccCCc-eEEEEEEEEEcCCcc--CC---CCcEEEEEEEeeCCCCCCHHHHHHHHcCC
Confidence 5 4554 999999987632110 11 57899999999999999999999999996
No 20
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=100.00 E-value=1.5e-36 Score=318.22 Aligned_cols=185 Identities=56% Similarity=0.867 Sum_probs=172.6
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCc
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS 873 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~s 873 (1083)
+++||||||||||||||+|+.+.+++|.|+|+|+..+.++++++++++++..+++..+.|+|+.+|++++.++..+++|+
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~ 80 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENS 80 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCe
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCCCce
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDV 953 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1083)
|+|+|||++|||+.++..+++.+++++.+..++++|++||++++..+++..++ |.++||.+.. + ++++
T Consensus 81 llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~~~~-v~~~~~~~~~--------~---~~~~ 148 (185)
T smart00534 81 LVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADEHPG-VRNLHMSADE--------E---TENL 148 (185)
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhcCcc-ceEEEEEEEE--------e---cCce
Confidence 99999999999999999999999998876338999999999999998887775 9999998764 1 4579
Q ss_pred eeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHH
Q 001405 954 TYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIA 990 (1083)
Q Consensus 954 ~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~ 990 (1083)
.|+|++.+|+++.|||+++|+++|+|++||+||++++
T Consensus 149 ~~~Y~l~~G~~~~s~a~~~a~~~g~~~~i~~~a~~~~ 185 (185)
T smart00534 149 TFLYKLTPGVAGKSYGIEVAKLAGLPKEVIERAKEIL 185 (185)
T ss_pred eEEEEEeECCCCCcHHHHHHHHhCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999999999873
No 21
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=100.00 E-value=5.7e-36 Score=316.49 Aligned_cols=196 Identities=30% Similarity=0.441 Sum_probs=179.7
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCC
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMG 843 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~ 843 (1083)
++++|||+++. +++|+||++|+. |++++||||||||||||||+|++.+++++.|+++|+....+. .+.+|.++.
T Consensus 2 ~~~~~hp~~~~---~~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a~~~~~q-~~~l~~~~~ 75 (199)
T cd03283 2 AKNLGHPLIGR---EKRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCASSFELP-PVKIFTSIR 75 (199)
T ss_pred CcccCCCeecC---CCeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEecCccCcc-cceEEEecc
Confidence 68999999984 689999999985 699999999999999999999999999999999999888887 688999999
Q ss_pred cchhHHhchhhhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 844 ASDSIQQGRSTFLEELNEASYILRNCT--AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 844 ~~d~~~~~~stf~~e~~~~~~il~~~~--~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..|++..+.|.|..++.++..++..+. +|+++|+|||++|||+.++..+.+++++.+.+ .+.++|++||+++++...
T Consensus 76 ~~d~l~~~~s~~~~e~~~~~~iL~~~~~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~~~~~~~ 154 (199)
T cd03283 76 VSDDLRDGISYFYAELRRLKEIVEKAKKGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDLELADLL 154 (199)
T ss_pred chhccccccChHHHHHHHHHHHHHhccCCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcHHHHHhh
Confidence 999999999999999999999999988 99999999999999999999888888888876 689999999999999887
Q ss_pred hhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCC
Q 001405 922 TKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978 (1083)
Q Consensus 922 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~ 978 (1083)
+..++ |.++||.+.. + +++++|+|+|.+|+|+.|||+++|+++|+
T Consensus 155 ~~~~~-v~~~~~~~~~--------~---~~~~~~~y~~~~G~~~~s~~~~~a~~~g~ 199 (199)
T cd03283 155 DLDSA-VRNYHFREDI--------D---DNKLIFDYKLKPGVSPTRNALRLMKKIGI 199 (199)
T ss_pred hcCCC-eEEEEEEEEE--------E---CCeeeEEEEeCCCCCCCcHHHHHHHHcCC
Confidence 76665 9999998765 2 57899999999999999999999999996
No 22
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=100.00 E-value=2.2e-34 Score=305.73 Aligned_cols=198 Identities=33% Similarity=0.555 Sum_probs=174.3
Q ss_pred eeecCccceeeecccccccccccccccCCc-eEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccc-cccchHHHHHh
Q 001405 763 HICSGRHPVLDTILLDNFVPNDTNLHAERE-YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS-AELHVLDGIYT 840 (1083)
Q Consensus 763 ~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g-~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~-~~~~~~~~i~~ 840 (1083)
.|+++|||+++.. .+++|++|+++. +| ++++|+||||||||||||+|+.+.+++|.|+++|+.. ..++.++++++
T Consensus 1 ~~~~~~hp~~~~~-~~~~~~~~~~i~--~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~~~~~~~~~~~ 77 (200)
T cd03280 1 RLREARHPLLPLQ-GEKVVPLDIQLG--ENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGSSLPVFENIFA 77 (200)
T ss_pred CCcccCCCEEecc-CCceEcceEEEC--CCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccccCcCccEEEE
Confidence 3789999999974 667888887775 45 6899999999999999999999999999999999984 57888899999
Q ss_pred hCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 841 RMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 841 ~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+++..+.+..+.|+|+.+|+++..++..+++|+++|+|||++|||+.++..++..+++.+.+ .++++|++||+.++..+
T Consensus 78 ~lg~~~~l~~~~s~fs~g~~~~~~i~~~~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~~l~~~ 156 (200)
T cd03280 78 DIGDEQSIEQSLSTFSSHMKNIARILQHADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYGELKAY 156 (200)
T ss_pred ecCchhhhhcCcchHHHHHHHHHHHHHhCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998888888876 68999999999888887
Q ss_pred hhhccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCC
Q 001405 921 KTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978 (1083)
Q Consensus 921 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~ 978 (1083)
+++... +.+.++.+ + .+.+.|+|++++|++++|||+++|+.+|+
T Consensus 157 ~d~~~~-l~~g~l~~----------~---~~~~~~~ykl~~G~~~~s~a~~~a~~~g~ 200 (200)
T cd03280 157 AYKREG-VENASMEF----------D---PETLKPTYRLLIGVPGRSNALEIARRLGL 200 (200)
T ss_pred HhcCCC-eEEEEEEE----------e---cCcccEEEEEeECCCCCcHHHHHHHHcCC
Confidence 776543 55555542 2 45799999999999999999999999996
No 23
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=100.00 E-value=4e-34 Score=304.35 Aligned_cols=200 Identities=50% Similarity=0.816 Sum_probs=181.8
Q ss_pred eecCccceeeec-ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhC
Q 001405 764 ICSGRHPVLDTI-LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRM 842 (1083)
Q Consensus 764 i~~~rhP~l~~~-~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~ 842 (1083)
++++|||+++.. ..+++||||++++ .|++++||||||||||||||+|++..+++|.|+++|+..+.+++++++++.+
T Consensus 2 ~~~~~~p~l~~~~~~~~~~~~~~~l~--~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~~~~~i~~~dqi~~~~ 79 (202)
T cd03243 2 IKGGRHPVLLALTKGETFVPNDINLG--SGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPAESASIPLVDRIFTRI 79 (202)
T ss_pred cccccCCEEeccccCCceEeeeEEEc--CCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccccccccCCcCEEEEEe
Confidence 689999999863 3567999999997 4789999999999999999999999999999999999999999999999999
Q ss_pred CcchhHHhchhhhHHHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 843 GASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 843 ~~~d~~~~~~stf~~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+..+++..+.|+|+.+|+++..++..+.+|+++|+|||++|||+.++..+.+.+++.+.+ .++++|++||+.++...++
T Consensus 80 ~~~d~i~~~~s~~~~e~~~l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~~~~~~~~ 158 (202)
T cd03243 80 GAEDSISDGRSTFMAELLELKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFHELADLPE 158 (202)
T ss_pred cCcccccCCceeHHHHHHHHHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999998888888876 6899999999999998887
Q ss_pred hccCCcceeEEEEEeecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCC
Q 001405 923 KFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQL 978 (1083)
Q Consensus 923 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~ 978 (1083)
..+. +.++||.+.. + .+++.|+|++.+|.+++|||+++|+++|+
T Consensus 159 ~~~~-l~~~~~~~~~--------~---~~~~~~~ykl~~g~~~~~~a~~~~~~~g~ 202 (202)
T cd03243 159 QVPG-VKNLHMEELI--------T---TGGLTFTYKLIDGICDPSYALQIAELAGL 202 (202)
T ss_pred cCCC-eEEEEEEEEe--------c---CCeeeEEEEEeECCCCCcHHHHHHHHcCC
Confidence 6554 7788887543 2 46799999999999999999999999996
No 24
>PF01624 MutS_I: MutS domain I C-terminus.; InterPro: IPR007695 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the N-terminal domain of proteins in the MutS family of DNA mismatch repair proteins, as well as closely related proteins. The N-terminal domain of MutS is responsible for mismatch recognition and forms a 6-stranded mixed beta-sheet surrounded by three alpha-helices, which is similar to the structure of tRNA endonuclease. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 3THY_B 3THZ_B 3THW_B 3THX_B 2WTU_A 1OH7_A ....
Probab=99.97 E-value=4e-32 Score=260.81 Aligned_cols=108 Identities=36% Similarity=0.611 Sum_probs=92.6
Q ss_pred CHHHHHHHHHHhhCCCeEEEEEeCcEEEEecHHHHHHHHHhCccccC----C-CCceeccccccChHHHHHHHHHcCCEE
Q 001405 90 TPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHL----D-HNFMTASIPTFRLNVHVRRLVNAGFKV 164 (1083)
Q Consensus 90 TP~~~Qy~~iK~~~~D~iL~fr~G~FYElf~~DA~~aa~~L~i~~~~----~-~~~~~aG~P~~~l~~~~~~Lv~~GykV 164 (1083)
|||++|||++|++|||+|+|||+|+|||+|++||+.+|++|++++.. . .++||||||.++++.|+++||++||+|
T Consensus 1 Tp~~~~y~~lk~k~~d~i~lf~~G~fYe~y~~DA~~~a~~l~~~~~~~~~~~~~~~~~~gfp~~~l~~~l~~Ll~~G~~V 80 (113)
T PF01624_consen 1 TPFEQQYWELKEKYPDTIVLFQVGDFYEAYGEDAEFVAEILGLKLSKRKTGGGKSVPMAGFPKSQLDKYLKKLLEAGYRV 80 (113)
T ss_dssp -HHHHHHHHHHCTSTTSEEEEEETTEEEEECHHHHHHHHHHTSSSEEEECSSSECEEEEEEEGGGHHHHHHHHHHTT-EE
T ss_pred ChHHHHHHHHHhhCCCeEEEEEcCCEEEEEccCHHHHHHhccceeeeccccccccccEecccHHHHHHHHHHHHHcCCEE
Confidence 89999999999999999999999999999999999999999999652 2 238999999999999999999999999
Q ss_pred EEEecccchHHhcCCCCCCCCeeecceeecccceeeccc
Q 001405 165 GVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAE 203 (1083)
Q Consensus 165 aiveQ~Et~~~k~~~~~k~~~v~R~v~~v~TpGT~~~~~ 203 (1083)
+||||+|++... +++++|+|++||||||++|+|
T Consensus 81 ~i~~q~~~~~~~------~~~~~R~v~~i~TpGt~~~~~ 113 (113)
T PF01624_consen 81 AIYEQVETPSET------KGLIEREVTRIYTPGTLIDDE 113 (113)
T ss_dssp EEEEE-S-HHHH------SSS--EEEEEEEBTTS-TST-
T ss_pred EEEEecCCcccc------CCCccEEEEEEECcCeecCcC
Confidence 999999998764 358999999999999998754
No 25
>PF05192 MutS_III: MutS domain III C-terminus.; InterPro: IPR007696 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the core domain (domain 3) found in proteins of the MutS family. The core domain of MutS adopts a multi-helical structure comprised of two subdomains, which are interrupted by the clamp domain. Two of the helices in the core domain comprise the levers that extend towards the DNA. This domain is found associated with Pfam:PF00488, Pfam:PF05188, Pfam:PF01624 and Pfam:PF05190. The aligned region corresponds with domain III, which is central to the structure of Thermus aquaticus MutS as characterised in [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 1FW6_A ....
Probab=99.91 E-value=4.1e-23 Score=219.73 Aligned_cols=108 Identities=33% Similarity=0.563 Sum_probs=92.6
Q ss_pred HhhHhhccceeecCCCCccccHhhhhcccCCChhHHHHHHHhhCcCCChHHHHHHHHHHHHHHHhcCCccccccccccCC
Q 001405 407 ANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDE 486 (1083)
Q Consensus 407 ~~Tl~nLEI~~n~~dgs~~gSL~~~Ln~T~T~~G~RLLR~WL~~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~ 486 (1083)
++|+++|||+++..+|+.+||||++||+|+|++|+|+||+||++|++|+++|++||++|++|..+.
T Consensus 1 ~~Tl~~L~i~~~~~~~~~~~sL~~~ln~t~T~~Gkr~L~~~l~~P~~d~~~I~~R~~~v~~~~~n~-------------- 66 (204)
T PF05192_consen 1 ANTLKSLEIFENSRSGKKKGSLFSLLNRTSTPMGKRLLRSWLLQPLTDIEEIEKRQDAVEEFLQNE-------------- 66 (204)
T ss_dssp HHHHHHTTSSSBTTTSSSSTSHHHHH---SSHHHHHHHHHHHHS-BS-HHHHHHHHHHHHHHHHTH--------------
T ss_pred ChhHHhccCCCCCCCCCCCCcHHHHHhcCCChHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhh--------------
Confidence 689999999999888889999999999999999999999999999999999999999999998642
Q ss_pred CCCccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHhcCCChhHHHHHHHHHHH
Q 001405 487 KNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILY 541 (1083)
Q Consensus 487 ~~~~~~~~~~~~~~ll~~l~~~L~~i~DlERll~ri~~~~~~~~d~~~l~~~l~~ 541 (1083)
.+...++..|++++|+++++.|+..+++++.++..+++.+..
T Consensus 67 -------------~~~~~~~~~l~~~~di~~~l~~l~~~~~~~~~~~~l~~~l~~ 108 (204)
T PF05192_consen 67 -------------ELREELRSILKKIPDIERILKRLRSGRASPQDLLKLYKTLRS 108 (204)
T ss_dssp -------------HHHHHHHHHHTTC-SHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred -------------hHhhhhhhhhhccchHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 345678889999999999999999999999999988877744
No 26
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.84 E-value=4.3e-21 Score=205.42 Aligned_cols=142 Identities=22% Similarity=0.244 Sum_probs=114.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-----------------hccccccccc---cccc--
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA-----------------QVGSFVPASS---AELH-- 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-----------------q~g~~vp~~~---~~~~-- 833 (1083)
|+...|+.||+|++.+|++++|+||||||||||+|.|+++.... ....|||+.. ..+|
T Consensus 14 y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~t 93 (254)
T COG1121 14 YGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPIT 93 (254)
T ss_pred ECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcC
Confidence 44336889999999999999999999999999999998754211 1235788742 1111
Q ss_pred -------------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 834 -------------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 834 -------------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.+++.+.++|..+...+.++.++++.+++..++++ +++|+|++||||+.|+|+.
T Consensus 94 V~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~ 173 (254)
T COG1121 94 VKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173 (254)
T ss_pred HHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHH
Confidence 13456778888888888899999998888888877 7999999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+ ..++..|.++ |+|||++|||++...
T Consensus 174 ~~~~i-~~lL~~l~~e-g~tIl~vtHDL~~v~ 203 (254)
T COG1121 174 GQKEI-YDLLKELRQE-GKTVLMVTHDLGLVM 203 (254)
T ss_pred HHHHH-HHHHHHHHHC-CCEEEEEeCCcHHhH
Confidence 77766 7888889885 999999999987653
No 27
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.84 E-value=8.4e-21 Score=196.66 Aligned_cols=151 Identities=14% Similarity=0.175 Sum_probs=116.7
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------Hhhccccccccc---ccc
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------MAQVGSFVPASS---AEL 832 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------laq~g~~vp~~~---~~~ 832 (1083)
+.+.||+..+++|+||++++|+|++++|||||||||.+|+|.++.- +.+...|+|.++ ..+
T Consensus 8 vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEERGLy~k~ 87 (300)
T COG4152 8 VTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEERGLYPKM 87 (300)
T ss_pred chhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhhccCccC
Confidence 4567899999999999999999999999999999999999986531 222334778764 334
Q ss_pred chHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.| ..+.|+++.+.....+.+++.++++....+.. +++|.|||||||++||||.+..
T Consensus 88 tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~e 167 (300)
T COG4152 88 TVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVE 167 (300)
T ss_pred cHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHH
Confidence 4433 34556666666666677888888876555544 7999999999999999999998
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhhc
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTKF 924 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~~ 924 (1083)
.+-.++.+ +.+ .|.||||+||.++-++ |||+.
T Consensus 168 lLk~~I~~-lk~-~GatIifSsH~Me~vEeLCD~l 200 (300)
T COG4152 168 LLKDAIFE-LKE-EGATIIFSSHRMEHVEELCDRL 200 (300)
T ss_pred HHHHHHHH-HHh-cCCEEEEecchHHHHHHHhhhh
Confidence 88666665 555 7999999999997764 66653
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.83 E-value=1.3e-20 Score=202.76 Aligned_cols=146 Identities=18% Similarity=0.194 Sum_probs=118.4
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccc--
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSA-- 830 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~-- 830 (1083)
...|++++|++|+||++++|++++|+||||||||||||+|+++. -+|+.-+|||+...
T Consensus 9 s~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~ 88 (258)
T COG1120 9 SFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88 (258)
T ss_pred EEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCC
Confidence 34567899999999999999999999999999999999998643 24566677776521
Q ss_pred -ccc-------------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 831 -ELH-------------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 831 -~~~-------------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
.++ .++..+..+|..+...+...+++++.++++.|+++ +.++++++|||||+.
T Consensus 89 ~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~ 168 (258)
T COG1120 89 FGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSH 168 (258)
T ss_pred CCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccc
Confidence 111 13344677788888888888899888888777776 789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||......+. .++..+.++.|.|+|+++||++++.
T Consensus 169 LDi~~Q~evl-~ll~~l~~~~~~tvv~vlHDlN~A~ 203 (258)
T COG1120 169 LDIAHQIEVL-ELLRDLNREKGLTVVMVLHDLNLAA 203 (258)
T ss_pred cCHHHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHH
Confidence 9999999994 5667777657999999999999874
No 29
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.83 E-value=3.2e-20 Score=207.99 Aligned_cols=147 Identities=20% Similarity=0.258 Sum_probs=113.2
Q ss_pred eeeccc-ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc
Q 001405 772 LDTILL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA 830 (1083)
Q Consensus 772 l~~~~~-~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~ 830 (1083)
+.+.++ ++.+++||||++.+|++++|+||||||||||||+|+++.. ..++| |+|....
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~ig-y~~~~~~ 88 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIG-YVPQEPS 88 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheE-EEccCCC
Confidence 355677 6899999999999999999999999999999999986542 22333 4554311
Q ss_pred ---ccc---------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 831 ---ELH---------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 831 ---~~~---------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.++ .+++++..+|..+......++|+.+|++...++.+ +.+|+|+||||||+|||
T Consensus 89 ~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLD 168 (293)
T COG1131 89 LYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168 (293)
T ss_pred CCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCC
Confidence 111 23456777887764455688999999988777665 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
|..+..+ +.++..+.++.+.+||++||+++.++.
T Consensus 169 p~~~~~~-~~~l~~l~~~g~~tvlissH~l~e~~~ 202 (293)
T COG1131 169 PESRREI-WELLRELAKEGGVTILLSTHILEEAEE 202 (293)
T ss_pred HHHHHHH-HHHHHHHHhCCCcEEEEeCCcHHHHHH
Confidence 9877777 677777777444899999999987753
No 30
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.83 E-value=2.3e-20 Score=197.08 Aligned_cols=148 Identities=21% Similarity=0.132 Sum_probs=117.0
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc---------------cccccccccccc----
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV---------------GSFVPASSAELH---- 833 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~---------------g~~vp~~~~~~~---- 833 (1083)
.+.|+...|+.||+|++.+|+++.|+||+|||||||||+|+++.-.... -.||.++.+-++
T Consensus 10 ~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~LlPW~Tv 89 (248)
T COG1116 10 SKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDALLPWLTV 89 (248)
T ss_pred EEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCcccchhhH
Confidence 3445667899999999999999999999999999999999976422110 023333332222
Q ss_pred --------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 834 --------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 834 --------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
....++..+|..+........++++|+|...|+++ +.+|.+++||||++.||...+..+
T Consensus 90 ~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~l 169 (248)
T COG1116 90 LDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREEL 169 (248)
T ss_pred HhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHH
Confidence 23456777888888888888999999999999887 689999999999999999999998
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
-..+++...+ .+.||+|+|||.+.+-+.
T Consensus 170 q~~l~~lw~~-~~~TvllVTHdi~EAv~L 197 (248)
T COG1116 170 QDELLRLWEE-TRKTVLLVTHDVDEAVYL 197 (248)
T ss_pred HHHHHHHHHh-hCCEEEEEeCCHHHHHhh
Confidence 7666665554 789999999999888643
No 31
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.82 E-value=9e-20 Score=187.17 Aligned_cols=143 Identities=38% Similarity=0.545 Sum_probs=117.3
Q ss_pred eecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh----------ccccccccccccc
Q 001405 764 ICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ----------VGSFVPASSAELH 833 (1083)
Q Consensus 764 i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq----------~g~~vp~~~~~~~ 833 (1083)
+..++||.+ +++|+|.+.- +.+++|||||||||||+||+|+.+..+++ .|+++|+....+
T Consensus 2 i~~~~~~~~-------~~~~~i~~~~--~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~- 71 (162)
T cd03227 2 IVLGRFPSY-------FVPNDVTFGE--GSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAEL- 71 (162)
T ss_pred ceeCCCCEE-------EeccEEecCC--CCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEE-
Confidence 567889987 6889998862 46999999999999999999999999998 899999887665
Q ss_pred hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 001405 834 VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT--AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911 (1083)
Q Consensus 834 ~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~--~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~ 911 (1083)
++++++ .|..+.++..++.++...+ +|+++|+|||++|||+.++..++..+.+++.+ ++++|++
T Consensus 72 ----i~~~~~--------lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--~~~vii~ 137 (162)
T cd03227 72 ----IFTRLQ--------LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK--GAQVIVI 137 (162)
T ss_pred ----ehheee--------ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--CCEEEEE
Confidence 555544 5666777778888887654 89999999999999999999998888877543 8999999
Q ss_pred eCchHHHHHhhhccCCcceeEEEEE
Q 001405 912 THYPKIADIKTKFTGSVGTYHVSYL 936 (1083)
Q Consensus 912 TH~~~l~~l~~~~~~~v~~~~~~~~ 936 (1083)
||++++...++ ..+||.+.
T Consensus 138 TH~~~~~~~~d------~~~~l~~~ 156 (162)
T cd03227 138 THLPELAELAD------KLIHIKKV 156 (162)
T ss_pred cCCHHHHHhhh------hEEEEEEE
Confidence 99999987653 34566543
No 32
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=1.6e-19 Score=185.23 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=117.3
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccccccc
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASS 829 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~ 829 (1083)
+.+.||+..|+++|++++.+|++++|+||+|||||||||+|.++.. -.++| +|.+.+
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG-mVFQ~f 86 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG-MVFQQF 86 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC-eecccc
Confidence 4567899999999999999999999999999999999999975431 11233 333322
Q ss_pred c---ccch----------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 830 A---ELHV----------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 830 ~---~~~~----------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
. .+++ ...++.++|..|......+.++++.+++..|+++ +.+|.++|+||||+.
T Consensus 87 nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSA 166 (240)
T COG1126 87 NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSA 166 (240)
T ss_pred cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCccc
Confidence 1 1122 1246788999999999999999999998888887 789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||+-...+ ..++..|.+ .|.|.+++||.+.++.
T Consensus 167 LDPElv~EV-L~vm~~LA~-eGmTMivVTHEM~FAr 200 (240)
T COG1126 167 LDPELVGEV-LDVMKDLAE-EGMTMIIVTHEMGFAR 200 (240)
T ss_pred CCHHHHHHH-HHHHHHHHH-cCCeEEEEechhHHHH
Confidence 999887777 456677877 7999999999999886
No 33
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.81 E-value=9.9e-20 Score=183.87 Aligned_cols=148 Identities=17% Similarity=0.238 Sum_probs=111.6
Q ss_pred ecccccc-cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hcccccccc---c
Q 001405 774 TILLDNF-VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------------------QVGSFVPAS---S 829 (1083)
Q Consensus 774 ~~~~~~~-v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------------------q~g~~vp~~---~ 829 (1083)
+.|++.. .+.||+|+++.|+|++|+||||+||||+||+|+.+.... ++|... .+ +
T Consensus 9 K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~-~e~glY 87 (245)
T COG4555 9 KSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLF-GERGLY 87 (245)
T ss_pred hhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceec-CCcChh
Confidence 3455544 689999999999999999999999999999999765432 233211 11 1
Q ss_pred cccch------H---------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 830 AELHV------L---------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 830 ~~~~~------~---------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
++++. | +.+..+++..+.+......|+.+|++...|+++ +.+|+++++|||++|+|..
T Consensus 88 ~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~ 167 (245)
T COG4555 88 ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIR 167 (245)
T ss_pred hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHH
Confidence 11211 1 234456777777888888899999998888887 6899999999999999987
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhhc
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTKF 924 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~~ 924 (1083)
....+ ..++.++.+ .|.+|||+||.++..+ +||+.
T Consensus 168 ~~r~~-~dfi~q~k~-egr~viFSSH~m~EvealCDrv 203 (245)
T COG4555 168 TRRKF-HDFIKQLKN-EGRAVIFSSHIMQEVEALCDRV 203 (245)
T ss_pred HHHHH-HHHHHHhhc-CCcEEEEecccHHHHHHhhheE
Confidence 76666 677777766 6899999999987665 77653
No 34
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.81 E-value=1.4e-19 Score=188.44 Aligned_cols=149 Identities=19% Similarity=0.201 Sum_probs=112.6
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH------------------------HHhhcccccc--c
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG------------------------IMAQVGSFVP--A 827 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~------------------------~laq~g~~vp--~ 827 (1083)
+.+|++.|++||+|++.+|++++|+||+|+|||||||+|+++. +..++|..+- |
T Consensus 16 ~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gA 95 (263)
T COG1127 16 KSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGA 95 (263)
T ss_pred eecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccc
Confidence 4578999999999999999999999999999999999997542 1222332111 1
Q ss_pred cccccchHHHH----------------------HhhCCcchh-HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 828 SSAELHVLDGI----------------------YTRMGASDS-IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 828 ~~~~~~~~~~i----------------------~~~~~~~d~-~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
-...+++++++ +..+|+... .....|.++++|++.+.++++ +.+|+|+++||||+|
T Consensus 96 LFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsG 175 (263)
T COG1127 96 LFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175 (263)
T ss_pred cccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCC
Confidence 12223333322 234566665 666788999999999988887 689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+||.....+ ..++..|.+..|.|++++|||.+-+ .++|+
T Consensus 176 LDPI~a~~~-~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Dr 215 (263)
T COG1127 176 LDPISAGVI-DELIRELNDALGLTVIMVTHDLDSLLTIADR 215 (263)
T ss_pred CCcchHHHH-HHHHHHHHHhhCCEEEEEECChHHHHhhhce
Confidence 999877776 6677778777899999999998654 45554
No 35
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.80 E-value=3.4e-19 Score=188.32 Aligned_cols=143 Identities=20% Similarity=0.278 Sum_probs=111.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------------Hhhcccccccccc---
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------------MAQVGSFVPASSA--- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------------laq~g~~vp~~~~--- 830 (1083)
..++++++|++++|++++|+||+||||||||++|+++.- ..++| ||.+.+.
T Consensus 18 ~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iG-fvFQ~~nLl~ 96 (226)
T COG1136 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIG-FVFQNFNLLP 96 (226)
T ss_pred eEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEE-EECccCCCCC
Confidence 368999999999999999999999999999999986531 11223 2322211
Q ss_pred ccch---------------------HHHHHhhCCcchhHH-hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHV---------------------LDGIYTRMGASDSIQ-QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~---------------------~~~i~~~~~~~d~~~-~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.+++ ...++..+|..+... ...+.++++.+|+..|+++ +.+|++|+.||||..||+.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~ 176 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSK 176 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChH
Confidence 1111 233556678877777 6688999999998888887 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
.+..+. .++..+.++.|.|+|+||||.+++..+++
T Consensus 177 t~~~V~-~ll~~~~~~~g~tii~VTHd~~lA~~~dr 211 (226)
T COG1136 177 TAKEVL-ELLRELNKERGKTIIMVTHDPELAKYADR 211 (226)
T ss_pred HHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHhCCE
Confidence 999885 56666666579999999999999987764
No 36
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.78 E-value=6.6e-19 Score=199.09 Aligned_cols=148 Identities=18% Similarity=0.263 Sum_probs=108.8
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---c
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~ 831 (1083)
+.|++..+++||+|++.+|++++|+||||||||||+|+|+++.. ..+.-.|+|+... .
T Consensus 15 k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 15 KRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred EEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 34566789999999999999999999999999999999986531 1112235554421 1
Q ss_pred cchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++.+ .++..++..+......+.++++|++...++++ +.+|+++||||||+|||+...
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~ 174 (306)
T PRK13537 95 FTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQAR 174 (306)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHH
Confidence 22222 23344555555555667888999887776665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
..+ +.++..+.+ .|.|||++||+++.++ ++++
T Consensus 175 ~~l-~~~l~~l~~-~g~till~sH~l~e~~~~~d~ 207 (306)
T PRK13537 175 HLM-WERLRSLLA-RGKTILLTTHFMEEAERLCDR 207 (306)
T ss_pred HHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 777 566666765 5899999999998764 5543
No 37
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.78 E-value=7.6e-19 Score=200.79 Aligned_cols=148 Identities=21% Similarity=0.244 Sum_probs=109.3
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---c
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~ 831 (1083)
+.|++..+++||+|++.+|++++|+||||||||||||+|+++.. ..+...|+|.... .
T Consensus 49 k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 128 (340)
T PRK13536 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVPQFDNLDLE 128 (340)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEeCCccCCCC
Confidence 34567789999999999999999999999999999999986531 1111234554321 1
Q ss_pred cchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++.+ .++.+++..+.......+++++|++...+++. +.+|+++|||||++|||+...
T Consensus 129 ~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r 208 (340)
T PRK13536 129 FTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHAR 208 (340)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 22222 23445555555556677899999888777765 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
..+ +.++..+.+ .|.+||++||+++.++ ++++
T Consensus 209 ~~l-~~~l~~l~~-~g~tilisSH~l~e~~~~~d~ 241 (340)
T PRK13536 209 HLI-WERLRSLLA-RGKTILLTTHFMEEAERLCDR 241 (340)
T ss_pred HHH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCCE
Confidence 877 556666665 5899999999998764 5543
No 38
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=2.8e-19 Score=180.45 Aligned_cols=150 Identities=19% Similarity=0.214 Sum_probs=111.4
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcc-ccccccc-
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVG-SFVPASS- 829 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g-~~vp~~~- 829 (1083)
+.+.|+++.|.|||||++.+|++++|+||||+||||.+.+|.+++ .-|++| .|+|++.
T Consensus 10 l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S 89 (243)
T COG1137 10 LAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS 89 (243)
T ss_pred hhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch
Confidence 356688999999999999999999999999999999999997553 235566 4788773
Q ss_pred --cccchHHHHHhhCCc-----------------------chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 830 --AELHVLDGIYTRMGA-----------------------SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 830 --~~~~~~~~i~~~~~~-----------------------~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
..+++.++|...+.. ..-......+++++.++...|+++ +.+|++++|||||+|
T Consensus 90 IFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAG 169 (243)
T COG1137 90 IFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAG 169 (243)
T ss_pred HhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccC
Confidence 345555555433221 111111223456666666666665 689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH-HHHhhh
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI-ADIKTK 923 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l-~~l~~~ 923 (1083)
.||.....| ..++.+|.. +|..|+++-|+... ..++++
T Consensus 170 VDPiaV~dI-q~iI~~L~~-rgiGvLITDHNVREtL~i~dR 208 (243)
T COG1137 170 VDPIAVIDI-QRIIKHLKD-RGIGVLITDHNVRETLDICDR 208 (243)
T ss_pred CCchhHHHH-HHHHHHHHh-CCceEEEccccHHHHHhhhhe
Confidence 999988888 778899987 79999999999744 345543
No 39
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.77 E-value=1.4e-18 Score=181.66 Aligned_cols=145 Identities=16% Similarity=0.171 Sum_probs=107.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccc-ccccc----------ccccchHHHHHhhCCc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGS-FVPAS----------SAELHVLDGIYTRMGA 844 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~-~vp~~----------~~~~~~~~~i~~~~~~ 844 (1083)
+++..++++++|++.+|++++|+||||||||||+|+|+++... .-|. ++... ...++++..++..+|.
T Consensus 9 ~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~-~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl 87 (180)
T cd03214 9 YGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKP-SSGEILLDGKDLASLSPKELARKIAYVPQALELLGL 87 (180)
T ss_pred ECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCC-CCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCC
Confidence 3445688999999999999999999999999999999876422 1221 11100 1123444446777888
Q ss_pred chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 845 SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 845 ~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
.+.+......+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.++.++++|++||+++.. ++++
T Consensus 88 ~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~-~~l~~~~~~~~~tiii~sh~~~~~~~~~d 166 (180)
T cd03214 88 AHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELL-ELLRRLARERGKTVVMVLHDLNLAARYAD 166 (180)
T ss_pred HhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 777777778888888887776665 7899999999999999998777774 555556552378999999999875 4443
No 40
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.76 E-value=2.2e-18 Score=185.76 Aligned_cols=142 Identities=20% Similarity=0.251 Sum_probs=102.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH------------------------Hhhcccccccccc---c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI------------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~------------------------laq~g~~vp~~~~---~ 831 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|.... .
T Consensus 17 ~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 96 (218)
T cd03255 17 VQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPD 96 (218)
T ss_pred eeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCC
Confidence 578899999999999999999999999999999986521 0111234443311 1
Q ss_pred cch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++ +..++..+|..+.......++++++++...+++. +.+|+++|||||++|+|+...
T Consensus 97 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~ 176 (218)
T cd03255 97 LTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETG 176 (218)
T ss_pred CcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHH
Confidence 111 1234455666555566667888888887777766 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+ ..++..+.++.|.+||++||+.+...++
T Consensus 177 ~~l-~~~l~~~~~~~~~tii~~sH~~~~~~~~ 207 (218)
T cd03255 177 KEV-MELLRELNKEAGTTIVVVTHDPELAEYA 207 (218)
T ss_pred HHH-HHHHHHHHHhcCCeEEEEECCHHHHhhh
Confidence 777 4555555542488999999999876543
No 41
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.76 E-value=3.3e-18 Score=171.58 Aligned_cols=139 Identities=17% Similarity=0.188 Sum_probs=110.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-----------------------HH-hhcccccccccc---
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-----------------------IM-AQVGSFVPASSA--- 830 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-----------------------~l-aq~g~~vp~~~~--- 830 (1083)
+..+++||+|++++|+++.|+||+|||||||||+|.... ++ .++|. |.+++.
T Consensus 14 g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGv-VFQD~rLL~ 92 (223)
T COG2884 14 GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGV-VFQDFRLLP 92 (223)
T ss_pred CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeee-Eeeeccccc
Confidence 355889999999999999999999999999999997543 12 23443 222211
Q ss_pred ccch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 831 ELHV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 831 ~~~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
..++ +...+..+|..+......+.++++.+|...|+++ +.+|.++|.||||.++||..
T Consensus 93 ~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~ 172 (223)
T COG2884 93 DRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDL 172 (223)
T ss_pred cchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHH
Confidence 1111 2345677888888888889999999998888887 68999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+..|+ .+++.+.. .|.|||++|||.++.+
T Consensus 173 s~~im-~lfeeinr-~GtTVl~ATHd~~lv~ 201 (223)
T COG2884 173 SWEIM-RLFEEINR-LGTTVLMATHDLELVN 201 (223)
T ss_pred HHHHH-HHHHHHhh-cCcEEEEEeccHHHHH
Confidence 88885 56677776 8999999999999875
No 42
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.76 E-value=2.1e-18 Score=194.96 Aligned_cols=145 Identities=19% Similarity=0.223 Sum_probs=107.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---ELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~~ 833 (1083)
|++..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .++
T Consensus 3 y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 82 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLT 82 (302)
T ss_pred eCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCc
Confidence 456678999999999999999999999999999999986531 0111234554321 111
Q ss_pred h---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 V---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+ ++.++..++..+......++++++|++...++++ +.+|+++||||||+|+|+.....
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 1 2234556666665666678899999888777765 68999999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
+ +.++..+.+ .|.+||++||+++.+. +++
T Consensus 163 l-~~~l~~~~~-~g~tvi~~sH~~~~~~~~~d 192 (302)
T TIGR01188 163 I-WDYIRALKE-EGVTILLTTHYMEEADKLCD 192 (302)
T ss_pred H-HHHHHHHHh-CCCEEEEECCCHHHHHHhCC
Confidence 7 556666665 5899999999997664 444
No 43
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.76 E-value=1.9e-18 Score=180.47 Aligned_cols=150 Identities=16% Similarity=0.203 Sum_probs=112.6
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------------H-Hhhccc
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------------I-MAQVGS 823 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------------~-laq~g~ 823 (1083)
+.+.|+++.+++|++|++++|++++++||+||||||+||+|..++ | +-|+|.
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL 86 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL 86 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhccc
Confidence 355677889999999999999999999999999999999997442 1 122332
Q ss_pred cccccc-----cccc------------hHHHHHhhCCcc--hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 824 FVPASS-----AELH------------VLDGIYTRMGAS--DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 824 ~vp~~~-----~~~~------------~~~~i~~~~~~~--d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
| |.-. +.++ -.++++..+|.. +...+..+.++++.++..-++++ +.+|.++||||||..
T Consensus 87 F-Ph~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgA 165 (309)
T COG1125 87 F-PHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGA 165 (309)
T ss_pred C-CCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccc
Confidence 2 2210 0010 134566777764 46667778889888887777776 789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+||..+..+-..+.+ +.++.|.||+|+|||.+.|- |+++
T Consensus 166 LDpI~R~~lQ~e~~~-lq~~l~kTivfVTHDidEA~kLadr 205 (309)
T COG1125 166 LDPITRKQLQEEIKE-LQKELGKTIVFVTHDIDEALKLADR 205 (309)
T ss_pred cChhhHHHHHHHHHH-HHHHhCCEEEEEecCHHHHHhhhce
Confidence 999999999555554 55558999999999998874 5543
No 44
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=3.2e-18 Score=183.81 Aligned_cols=142 Identities=18% Similarity=0.137 Sum_probs=102.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~ 834 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+... ..++
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 89 (213)
T cd03259 10 YGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQDYALFPHLTV 89 (213)
T ss_pred eCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCchhhccCCcH
Confidence 4456789999999999999999999999999999999875311 011134444311 1111
Q ss_pred H---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 L---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
. ..++..++..+........+++++++...+++. +.+|+++||||||+|+|+.....+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 223445566555556667788888887777765 688999999999999999887777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
. .++..+.++.|.+||++||+.+..
T Consensus 170 ~-~~l~~~~~~~~~tii~~sH~~~~~ 194 (213)
T cd03259 170 R-EELKELQRELGITTIYVTHDQEEA 194 (213)
T ss_pred H-HHHHHHHHHcCCEEEEEecCHHHH
Confidence 4 555555543488999999998764
No 45
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=5.2e-18 Score=183.15 Aligned_cols=143 Identities=18% Similarity=0.178 Sum_probs=103.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASSA---ELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~~---~~~ 833 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+... .++
T Consensus 10 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (220)
T cd03265 10 YGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQDLSVDDELT 89 (220)
T ss_pred ECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecCCccccccCc
Confidence 4556789999999999999999999999999999999865310 111224444321 111
Q ss_pred h---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 V---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+ +..++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (220)
T cd03265 90 GWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAH 169 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHH
Confidence 1 1234455666655556667888888887766665 78999999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+. .++..+.++.|.++|++||+.+.+.
T Consensus 170 l~-~~l~~~~~~~~~tvi~~tH~~~~~~ 196 (220)
T cd03265 170 VW-EYIEKLKEEFGMTILLTTHYMEEAE 196 (220)
T ss_pred HH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 74 5555555534889999999988654
No 46
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=3.5e-18 Score=184.49 Aligned_cols=139 Identities=19% Similarity=0.159 Sum_probs=100.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------hhcccccccccc---ccchH-----
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------AQVGSFVPASSA---ELHVL----- 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------aq~g~~vp~~~~---~~~~~----- 835 (1083)
+.++++++|++.+|++++|+||||||||||||+|+++... .+...|+|+... ..++.
T Consensus 17 ~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~ 96 (220)
T cd03293 17 VTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNVAL 96 (220)
T ss_pred eEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEecccccccCCCHHHHHHH
Confidence 5788999999999999999999999999999999876321 011134443311 11121
Q ss_pred ----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001405 836 ----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLD 898 (1083)
Q Consensus 836 ----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~ 898 (1083)
..++..++..+.+....+.+++++++...+++. +.+|+++|||||++|+|+.....+. .++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~-~~l~ 175 (220)
T cd03293 97 GLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQ-EELL 175 (220)
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHH-HHHH
Confidence 223445566555555667888888887776665 6889999999999999998888774 4555
Q ss_pred HHHhCCCcEEEEEeCchHHH
Q 001405 899 YLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 899 ~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.+.+..+.++|++||+++..
T Consensus 176 ~~~~~~~~tiii~sH~~~~~ 195 (220)
T cd03293 176 DIWRETGKTVLLVTHDIDEA 195 (220)
T ss_pred HHHHHcCCEEEEEecCHHHH
Confidence 55443588999999999754
No 47
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.75 E-value=5.2e-18 Score=181.89 Aligned_cols=139 Identities=17% Similarity=0.124 Sum_probs=102.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccc----cccch
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASS----AELHV 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~----~~~~~ 834 (1083)
+.++++++|++.+|++++|+||||||||||||+|+++... .+...|+|+.. ...++
T Consensus 14 ~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~ 93 (211)
T cd03225 14 RPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTV 93 (211)
T ss_pred eeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcH
Confidence 5789999999999999999999999999999999865310 11123444432 11122
Q ss_pred HH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 LD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
.+ .++..++..+.+....+.+++++++...+++. +.+|+++||||||+|+|+.....+
T Consensus 94 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~ 173 (211)
T cd03225 94 EEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRREL 173 (211)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 22 24445566555556667888888887777765 688999999999999999888877
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
. .++..+.+ .|+++|++||+.+.+.
T Consensus 174 ~-~~l~~~~~-~~~tvi~~sH~~~~~~ 198 (211)
T cd03225 174 L-ELLKKLKA-EGKTIIIVTHDLDLLL 198 (211)
T ss_pred H-HHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 5 45555555 4899999999988664
No 48
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.75 E-value=5.1e-18 Score=182.66 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=102.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~~ 832 (1083)
+.++++++|++.+|++++|+||||||||||||+|+++.. ..+.-.|+|+... ..
T Consensus 16 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 95 (216)
T TIGR00960 16 QPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR 95 (216)
T ss_pred eeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccc
Confidence 468899999999999999999999999999999986421 1112234444321 11
Q ss_pred chH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++. ..++..+|..+........+++++++...+++. +.+|+++||||||+|+|+....
T Consensus 96 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 175 (216)
T TIGR00960 96 TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSR 175 (216)
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHH
Confidence 222 223445566555556667888888887777765 6899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+. .++..+.+ .|.++|++||+.+...
T Consensus 176 ~l~-~~l~~~~~-~~~tii~vsH~~~~~~ 202 (216)
T TIGR00960 176 DIM-RLFEEFNR-RGTTVLVATHDINLVE 202 (216)
T ss_pred HHH-HHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 775 45555655 5889999999988664
No 49
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.75 E-value=4.9e-18 Score=181.32 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=103.5
Q ss_pred ccc-cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------Hhhccccccccc----cccc
Q 001405 776 LLD-NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------MAQVGSFVPASS----AELH 833 (1083)
Q Consensus 776 ~~~-~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------laq~g~~vp~~~----~~~~ 833 (1083)
+++ ..++++++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+.. ...+
T Consensus 9 ~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~t 88 (205)
T cd03226 9 YKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDS 88 (205)
T ss_pred eCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecChhhhhhhcc
Confidence 444 678999999999999999999999999999999986531 011123444442 1112
Q ss_pred hH-----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 834 VL-----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 834 ~~-----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
+. ..++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+ ..
T Consensus 89 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~ 167 (205)
T cd03226 89 VREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV-GE 167 (205)
T ss_pred HHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHH-HH
Confidence 22 234455565555555667788888887777765 689999999999999999877777 45
Q ss_pred HHHHHHhCCCcEEEEEeCchHHHH
Q 001405 896 TLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++..+.+ .|.++|++||+++...
T Consensus 168 ~l~~~~~-~~~tii~~sH~~~~~~ 190 (205)
T cd03226 168 LIRELAA-QGKAVIVITHDYEFLA 190 (205)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHH
Confidence 6666655 5889999999988664
No 50
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7e-18 Score=175.29 Aligned_cols=146 Identities=19% Similarity=0.204 Sum_probs=115.1
Q ss_pred eecc-cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH------------------------HHhhcccc---
Q 001405 773 DTIL-LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG------------------------IMAQVGSF--- 824 (1083)
Q Consensus 773 ~~~~-~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~------------------------~laq~g~~--- 824 (1083)
.+.| +++.++.||+|++++||+++|+||+|||||||||+|.+++ +.+++|+.
T Consensus 10 ~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~ 89 (258)
T COG3638 10 SKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQ 89 (258)
T ss_pred eeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEecc
Confidence 3345 6789999999999999999999999999999999997542 23455532
Q ss_pred ---ccccc----------cccchH---------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEE
Q 001405 825 ---VPASS----------AELHVL---------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLV 875 (1083)
Q Consensus 825 ---vp~~~----------~~~~~~---------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLv 875 (1083)
||..+ ...+.+ -..++++|..+......++++++.++...|++. +.+|.++
T Consensus 90 ~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiI 169 (258)
T COG3638 90 FNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKII 169 (258)
T ss_pred CCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEE
Confidence 22211 011111 124678899999999999999999998888887 5889999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 876 IVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 876 llDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|-|||.++|||..+..++ .++..+.++.|.|+|++-|+.+++.
T Consensus 170 LADEPvasLDp~~a~~Vm-~~l~~in~~~g~Tvi~nLH~vdlA~ 212 (258)
T COG3638 170 LADEPVASLDPESAKKVM-DILKDINQEDGITVIVNLHQVDLAK 212 (258)
T ss_pred ecCCcccccChhhHHHHH-HHHHHHHHHcCCEEEEEechHHHHH
Confidence 999999999999998885 5566677668999999999999885
No 51
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.75 E-value=5.8e-18 Score=180.82 Aligned_cols=144 Identities=18% Similarity=0.209 Sum_probs=102.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcccccccccc-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSA- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~- 830 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+++...
T Consensus 8 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 87 (206)
T TIGR03608 8 FGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFAL 87 (206)
T ss_pred ECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchhh
Confidence 4456789999999999999999999999999999999865310 111223333211
Q ss_pred --ccchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 --ELHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 --~~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
..++. ..++..+|..+........+++++++...+++. +.+|+++|||||++|+|+
T Consensus 88 ~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~ 167 (206)
T TIGR03608 88 IENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDP 167 (206)
T ss_pred ccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCH
Confidence 11111 224455566555555566788888777666665 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.....+ ..++..+.+ .|.++|++||+.++..++
T Consensus 168 ~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~~~ 200 (206)
T TIGR03608 168 KNRDEV-LDLLLELND-EGKTIIIVTHDPEVAKQA 200 (206)
T ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHhhc
Confidence 877777 455666655 589999999999876543
No 52
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.75 E-value=7.8e-18 Score=180.15 Aligned_cols=142 Identities=18% Similarity=0.144 Sum_probs=103.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~ 834 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+... ..++
T Consensus 10 ~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (208)
T cd03268 10 YGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTA 89 (208)
T ss_pred ECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCCCccCccCcH
Confidence 4456789999999999999999999999999999999865310 111234554421 1122
Q ss_pred H-----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 001405 835 L-----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYAT 896 (1083)
Q Consensus 835 ~-----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~i 896 (1083)
. ..++.+++..+........+++++++...+++. +.+|+++||||||+|+|+.....+ ..+
T Consensus 90 ~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~ 168 (208)
T cd03268 90 RENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKEL-REL 168 (208)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHH-HHH
Confidence 2 224455566555566667788888877666665 688999999999999999877777 456
Q ss_pred HHHHHhCCCcEEEEEeCchHHHH
Q 001405 897 LDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 897 l~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+..+.+ .|.++|++||+.+.+.
T Consensus 169 l~~~~~-~~~tii~~tH~~~~~~ 190 (208)
T cd03268 169 ILSLRD-QGITVLISSHLLSEIQ 190 (208)
T ss_pred HHHHHH-CCCEEEEEcCCHHHHH
Confidence 666665 5889999999998764
No 53
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.75 E-value=6.9e-18 Score=181.36 Aligned_cols=140 Identities=16% Similarity=0.153 Sum_probs=102.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---c
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~ 831 (1083)
+..+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+|.... .
T Consensus 14 ~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (214)
T TIGR02673 14 GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPD 93 (214)
T ss_pred CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccC
Confidence 4568999999999999999999999999999999986531 1111234443311 1
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.++. ..++..++..+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 173 (214)
T TIGR02673 94 RTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLS 173 (214)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHH
Confidence 1121 223445566555555667888888887777765 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+. .++..+.+ .|.++|++||+++...
T Consensus 174 ~~l~-~~l~~~~~-~~~tii~~tH~~~~~~ 201 (214)
T TIGR02673 174 ERIL-DLLKRLNK-RGTTVIVATHDLSLVD 201 (214)
T ss_pred HHHH-HHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 7775 45555555 5889999999987654
No 54
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.75 E-value=6.1e-18 Score=191.37 Aligned_cols=146 Identities=22% Similarity=0.245 Sum_probs=106.1
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASSA---EL 832 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~~---~~ 832 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... .+..+|+|+... .+
T Consensus 13 ~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (303)
T TIGR01288 13 SYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEF 92 (303)
T ss_pred EeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEeccccCCcCC
Confidence 34566799999999999999999999999999999999865310 111234554321 12
Q ss_pred chHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.+ .++..++..+.......+++++|++...+++. +.+|+++||||||+|+|+....
T Consensus 93 tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~ 172 (303)
T TIGR01288 93 TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARH 172 (303)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 2222 23344555555555667888888888777765 6899999999999999998877
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
.+ +.++..+.+ .|.+||++||+++.+. +++
T Consensus 173 ~l-~~~l~~~~~-~g~til~~sH~~~~~~~~~d 203 (303)
T TIGR01288 173 LI-WERLRSLLA-RGKTILLTTHFMEEAERLCD 203 (303)
T ss_pred HH-HHHHHHHHh-CCCEEEEECCCHHHHHHhCC
Confidence 77 455666665 5899999999998764 444
No 55
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.74 E-value=4.3e-18 Score=179.54 Aligned_cols=139 Identities=19% Similarity=0.116 Sum_probs=101.2
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccccccc----c
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASS----A 830 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~----~ 830 (1083)
+++.++++++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+.. .
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 45678999999999999999999999999999999986421 011123444432 1
Q ss_pred ccchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 831 ELHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 831 ~~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
..++. ..++..+|..+......+.+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 162 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAG 162 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 11121 223444566555566667888888887776665 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
...+. .++..+.+ .|.++|++||+.++
T Consensus 163 ~~~~~-~~l~~~~~-~~~tili~sH~~~~ 189 (190)
T TIGR01166 163 REQML-AILRRLRA-EGMTVVISTHDVDL 189 (190)
T ss_pred HHHHH-HHHHHHHH-cCCEEEEEeecccc
Confidence 77774 55555655 58999999999864
No 56
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=7.6e-18 Score=183.72 Aligned_cols=143 Identities=18% Similarity=0.160 Sum_probs=102.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc--
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA-- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~-- 830 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+...
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (235)
T cd03261 10 FGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALF 89 (235)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccC
Confidence 445678999999999999999999999999999999986431 0111234454321
Q ss_pred -ccchHH----------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 -ELHVLD----------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 -~~~~~~----------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.+++.+ .++..++..+......+.+++++++...+++. +.+|+++||||||+|+|+
T Consensus 90 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~ 169 (235)
T cd03261 90 DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDP 169 (235)
T ss_pred CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCH
Confidence 112222 23344555554555567788888887777765 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.++.|.+||++||+++.+.
T Consensus 170 ~~~~~l~-~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 170 IASGVID-DLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Confidence 8777774 4555555424889999999998653
No 57
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.74 E-value=6.3e-18 Score=181.52 Aligned_cols=143 Identities=16% Similarity=0.132 Sum_probs=102.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcccccccccc---ccch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~---~~~~ 834 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.... +...|+|+... ..++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv 89 (213)
T cd03301 10 FGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQNYALYPHMTV 89 (213)
T ss_pred ECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecChhhccCCCH
Confidence 34556889999999999999999999999999999998753110 01123443311 1111
Q ss_pred H---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 L---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
. +.++.++|..+........+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l 169 (213)
T cd03301 90 YDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQM 169 (213)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1 234455666555666667888888887776665 689999999999999999887777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
. .++..+.++.|+++|++||+.+...
T Consensus 170 ~-~~l~~~~~~~~~tvi~~sH~~~~~~ 195 (213)
T cd03301 170 R-AELKRLQQRLGTTTIYVTHDQVEAM 195 (213)
T ss_pred H-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4 4555555434899999999987653
No 58
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.74 E-value=9.4e-18 Score=185.01 Aligned_cols=142 Identities=17% Similarity=0.149 Sum_probs=104.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------hhccccccccccc---cch---
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------AQVGSFVPASSAE---LHV--- 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------aq~g~~vp~~~~~---~~~--- 834 (1083)
|++..+++|++|++.+|++++|+||||||||||||+|+++... .+..+|+++.... .++
T Consensus 22 ~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~l~~~~tv~en 101 (257)
T PRK11247 22 YGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDARLLPWKKVIDN 101 (257)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCccCCCCCcHHHH
Confidence 4456789999999999999999999999999999999865311 1112244433111 112
Q ss_pred ------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001405 835 ------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901 (1083)
Q Consensus 835 ------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~ 901 (1083)
...++..+|..+......+.+++++++...+++. +.+|+++|||||++|||+.....+. .++..+.
T Consensus 102 l~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~ 180 (257)
T PRK11247 102 VGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQ-DLIESLW 180 (257)
T ss_pred HHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHH
Confidence 1234556676666666777889888887777765 6889999999999999998777774 4555554
Q ss_pred hCCCcEEEEEeCchHHH
Q 001405 902 EHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 902 ~~~~~~vl~~TH~~~l~ 918 (1083)
++.+.++|++||+.+..
T Consensus 181 ~~~~~tviivsHd~~~~ 197 (257)
T PRK11247 181 QQHGFTVLLVTHDVSEA 197 (257)
T ss_pred HHcCCEEEEEeCCHHHH
Confidence 43588999999999865
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.74 E-value=1e-17 Score=182.28 Aligned_cols=141 Identities=16% Similarity=0.140 Sum_probs=100.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~~---~ 831 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+... .
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (232)
T cd03218 10 YGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEASIFRK 89 (232)
T ss_pred eCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcccccc
Confidence 4456789999999999999999999999999999999865310 011124443311 1
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++. +.++..++..+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 90 LTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 1221 223444555555555566788888887666665 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
..+ ..++..+.+ .+.++|++||+++..
T Consensus 170 ~~~-~~~l~~~~~-~~~tii~~sH~~~~~ 196 (232)
T cd03218 170 QDI-QKIIKILKD-RGIGVLITDHNVRET 196 (232)
T ss_pred HHH-HHHHHHHHH-CCCEEEEEeCCHHHH
Confidence 777 456666665 588999999998644
No 60
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.74 E-value=1.2e-17 Score=180.53 Aligned_cols=140 Identities=19% Similarity=0.179 Sum_probs=102.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hh-hcccccccccc---c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MA-QVGSFVPASSA---E 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------la-q~g~~vp~~~~---~ 831 (1083)
..++++++|++.+|++++|+||||||||||||+|+++.. .. +...|+|+... .
T Consensus 18 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 97 (221)
T TIGR02211 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPD 97 (221)
T ss_pred eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCC
Confidence 468899999999999999999999999999999986421 00 11234444311 1
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.++. ..++..+|..+.+.....++++++++...+++. +.+|+++||||||+|+|+...
T Consensus 98 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~ 177 (221)
T TIGR02211 98 FTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNA 177 (221)
T ss_pred CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHH
Confidence 1121 234455566555566667888888887777765 689999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+. .++..+.++.+.++|++||+++...
T Consensus 178 ~~l~-~~l~~~~~~~~~tii~~tH~~~~~~ 206 (221)
T TIGR02211 178 KIIF-DLMLELNRELNTSFLVVTHDLELAK 206 (221)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 7774 5555565435889999999998764
No 61
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.74 E-value=1.5e-17 Score=178.51 Aligned_cols=142 Identities=20% Similarity=0.199 Sum_probs=102.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcccccccccc---
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------AQVGSFVPASSA--- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------aq~g~~vp~~~~--- 830 (1083)
++++.++++++|++.+|++++|+||||||||||||+|+++... .+...|+|+...
T Consensus 10 ~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 89 (213)
T cd03262 10 FGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFP 89 (213)
T ss_pred ECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccccCC
Confidence 4456788999999999999999999999999999999865310 111234444321
Q ss_pred ccchH----------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVL----------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~----------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.+++. ..++.++|....+......+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 90 ~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 169 (213)
T cd03262 90 HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169 (213)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 11221 223445555555556667788888887776665 6889999999999999997
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+ ..++..+.+ .|.++|++||+.+...
T Consensus 170 ~~~~l-~~~l~~~~~-~~~tvi~~sh~~~~~~ 199 (213)
T cd03262 170 LVGEV-LDVMKDLAE-EGMTMVVVTHEMGFAR 199 (213)
T ss_pred HHHHH-HHHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 77766 556666665 5889999999987663
No 62
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.74 E-value=9.5e-18 Score=180.15 Aligned_cols=142 Identities=20% Similarity=0.202 Sum_probs=102.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------Hhhcccccccccc-----ccchH
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------MAQVGSFVPASSA-----ELHVL 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------laq~g~~vp~~~~-----~~~~~ 835 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... ..++.
T Consensus 9 ~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~ 88 (213)
T cd03235 9 YGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSIDRDFPISVR 88 (213)
T ss_pred ECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccccCCCCcHH
Confidence 345568899999999999999999999999999999986531 0111234444311 11222
Q ss_pred -------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 836 -------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 836 -------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
..++..++..+........+++++++...+++. +.+|+++||||||+|||+...
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 168 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 223445555555555667888888887777765 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+.. ++..+.+ .|.++|++||+.+...
T Consensus 169 ~~l~~-~l~~~~~-~~~tvi~~sH~~~~~~ 196 (213)
T cd03235 169 EDIYE-LLRELRR-EGMTILVVTHDLGLVL 196 (213)
T ss_pred HHHHH-HHHHHHh-cCCEEEEEeCCHHHHH
Confidence 87754 5555555 5889999999987653
No 63
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.1e-17 Score=179.21 Aligned_cols=142 Identities=17% Similarity=0.194 Sum_probs=101.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------hhcccccccccc---ccchH-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------AQVGSFVPASSA---ELHVL- 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------aq~g~~vp~~~~---~~~~~- 835 (1083)
++++.++++++|++.+|++++|+|||||||||||++|+++... .....|+|+... .+++.
T Consensus 10 ~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~e 89 (210)
T cd03269 10 FGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVID 89 (210)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCcCCcCCcHHH
Confidence 3456788999999999999999999999999999999865311 111124443311 11221
Q ss_pred --------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 836 --------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 836 --------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
..++..+|...........+++++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 90 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~- 168 (210)
T cd03269 90 QLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLK- 168 (210)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-
Confidence 223444555544555566788888877666665 6899999999999999998777774
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+++.+.+ .++++|++||+.+...
T Consensus 169 ~~l~~~~~-~~~tii~~sH~~~~~~ 192 (210)
T cd03269 169 DVIRELAR-AGKTVILSTHQMELVE 192 (210)
T ss_pred HHHHHHHH-CCCEEEEECCCHHHHH
Confidence 45555655 5889999999988653
No 64
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=1.5e-17 Score=181.26 Aligned_cols=140 Identities=18% Similarity=0.188 Sum_probs=101.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------H-hhcccccccccc---c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------M-AQVGSFVPASSA---E 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------l-aq~g~~vp~~~~---~ 831 (1083)
..++++++|++.+|++++|+||||||||||||+|+++.. . .+.-.|+|+... .
T Consensus 22 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 101 (233)
T PRK11629 22 TDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPD 101 (233)
T ss_pred eeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCC
Confidence 468999999999999999999999999999999986531 0 011234444311 1
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++. ..++..+|..+........+++++++...+++. +.+|+++||||||+|+|+...
T Consensus 102 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~ 181 (233)
T PRK11629 102 FTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNA 181 (233)
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHH
Confidence 1221 234455566555555667788888887776665 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+ ..++..+.+..|.++|++||+.+.+.
T Consensus 182 ~~l-~~~l~~~~~~~g~tvii~sH~~~~~~ 210 (233)
T PRK11629 182 DSI-FQLLGELNRLQGTAFLVVTHDLQLAK 210 (233)
T ss_pred HHH-HHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 776 45666665435899999999998765
No 65
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=1.2e-17 Score=182.88 Aligned_cols=143 Identities=17% Similarity=0.170 Sum_probs=101.4
Q ss_pred ccc-cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc-
Q 001405 776 LLD-NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA- 830 (1083)
Q Consensus 776 ~~~-~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~- 830 (1083)
+++ ..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+...
T Consensus 10 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~ 89 (241)
T cd03256 10 YPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNL 89 (241)
T ss_pred cCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcc
Confidence 444 678999999999999999999999999999999986531 0111234444311
Q ss_pred --ccchHHH-----------------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 831 --ELHVLDG-----------------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 831 --~~~~~~~-----------------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
..++.+. ++..++..+........+++++++...+++. +.+|+++|||
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllD 169 (241)
T cd03256 90 IERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILAD 169 (241)
T ss_pred cccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 1222222 2334444444444556778888887776665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||++|+|+.....+ ..++..+.++.|.+||++||+++.+.
T Consensus 170 EPt~~LD~~~~~~l-~~~l~~~~~~~~~tii~~tH~~~~~~ 209 (241)
T cd03256 170 EPVASLDPASSRQV-MDLLKRINREEGITVIVSLHQVDLAR 209 (241)
T ss_pred CccccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999877777 45565565435889999999998765
No 66
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.74 E-value=8.2e-18 Score=190.04 Aligned_cols=146 Identities=13% Similarity=0.181 Sum_probs=106.4
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~ 832 (1083)
.+++..+++|++|++.+|++++|+||||||||||||+|+++.. ..+.-.|+|+... .+
T Consensus 11 ~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~ 90 (301)
T TIGR03522 11 LYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM 90 (301)
T ss_pred EECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEecCCCCCCCCC
Confidence 3456679999999999999999999999999999999986531 1112234454321 11
Q ss_pred ch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++ ++.++..+|..+......+.++++|++...++++ +.+|+++|||||++|+|+....
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~ 170 (301)
T TIGR03522 91 YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLV 170 (301)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 22 2234445666655666677888888887766665 7899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
.+ +.++..+.+ +.+||++||+++.+ +++++
T Consensus 171 ~l-~~~l~~~~~--~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 171 EI-RNVIKNIGK--DKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred HH-HHHHHHhcC--CCEEEEEcCCHHHHHHhCCE
Confidence 76 556666643 68999999999855 45554
No 67
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.73 E-value=8.8e-18 Score=188.76 Aligned_cols=157 Identities=14% Similarity=0.113 Sum_probs=114.9
Q ss_pred eeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc--------c----------
Q 001405 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV--------G---------- 822 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~--------g---------- 822 (1083)
.+.|++ +.+.|++..+++|+||++.+|+++.|+||+||||||+||+||++.-.... -
T Consensus 5 ~l~i~~-----v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~i 79 (352)
T COG3842 5 ALEIRN-----VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPI 79 (352)
T ss_pred eEEEEe-----eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccc
Confidence 455555 67778999999999999999999999999999999999999976532110 0
Q ss_pred ccccccccc---cchH----------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEE
Q 001405 823 SFVPASSAE---LHVL----------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVI 876 (1083)
Q Consensus 823 ~~vp~~~~~---~~~~----------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvl 876 (1083)
.+|.++++- +++. .+.+..+++.+......+..+++.++...++++ +.+|.++|
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 122222221 1222 223444555555555666778888887777766 68999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
||||.+.||..-+..+...+.+.. ++.|.|+|++|||.+.+- ++|+
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq-~~~giT~i~VTHDqeEAl~msDr 206 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQ-RELGITFVYVTHDQEEALAMSDR 206 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHH-HhcCCeEEEEECCHHHHhhhccc
Confidence 999999999999998876666544 447999999999998874 4443
No 68
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.73 E-value=4.9e-18 Score=175.83 Aligned_cols=139 Identities=15% Similarity=0.152 Sum_probs=99.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh--cccccccc----ccccchHHHHHhhCCcch-hHHh
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ--VGSFVPAS----SAELHVLDGIYTRMGASD-SIQQ 850 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq--~g~~vp~~----~~~~~~~~~i~~~~~~~d-~~~~ 850 (1083)
...+++|+||++.+|++++|+||||||||||||++..- -.. ++...+.. ...+.. .+++.+++... .+..
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~~--~G~v~~~~~~~~~~~~~~~~~~q-~~~l~~~~L~~~~~~~ 83 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLYA--SGKARLISFLPKFSRNKLIFIDQ-LQFLIDVGLGYLTLGQ 83 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhhc--CCcEEECCcccccccccEEEEhH-HHHHHHcCCCccccCC
Confidence 45778999999999999999999999999999987420 000 01111111 011111 34667777654 3566
Q ss_pred chhhhHHHHHHHHHHHHh-CCC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 851 GRSTFLEELNEASYILRN-CTA--QSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 851 ~~stf~~e~~~~~~il~~-~~~--~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
....+++++++...+++. +.+ |+++|||||++|+|+.....+.. ++..+.+ .|.+||++||+++....+
T Consensus 84 ~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~-~l~~~~~-~g~tvIivSH~~~~~~~~ 155 (176)
T cd03238 84 KLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLE-VIKGLID-LGNTVILIEHNLDVLSSA 155 (176)
T ss_pred CcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHh-CCCEEEEEeCCHHHHHhC
Confidence 677888888887776665 577 99999999999999988887754 4555555 689999999999876543
No 69
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9.3e-18 Score=175.88 Aligned_cols=143 Identities=16% Similarity=0.138 Sum_probs=104.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH----------------------HHhhcccc--------c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG----------------------IMAQVGSF--------V 825 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~----------------------~laq~g~~--------v 825 (1083)
++++.|+.|+++++++|+-++|+|||||||||||+++++-- +-..+|.. .
T Consensus 41 r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~ 120 (257)
T COG1119 41 RNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFR 120 (257)
T ss_pred ECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhcc
Confidence 57899999999999999999999999999999999996321 11122210 0
Q ss_pred c----------ccccccc------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 826 P----------ASSAELH------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 826 p----------~~~~~~~------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
+ +.++.++ ....++..+|+..-......+++.+++++.-|+++ +.+|.|+|||||+.
T Consensus 121 ~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~ 200 (257)
T COG1119 121 VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQ 200 (257)
T ss_pred cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccc
Confidence 0 0011111 12346667777776777778888899998888887 68999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|+|......+...+.+......+.++|||||+.+.+
T Consensus 201 GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi 236 (257)
T COG1119 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEI 236 (257)
T ss_pred cCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhc
Confidence 999987766654444433333478999999998754
No 70
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.73 E-value=1.6e-17 Score=179.01 Aligned_cols=138 Identities=18% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhccccccccc---cccchH--
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASS---AELHVL-- 835 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~---~~~~~~-- 835 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+.. ..+++.
T Consensus 19 ~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~ 98 (218)
T cd03266 19 QAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRLTAREN 98 (218)
T ss_pred eeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEEEecCCcccCcCCCHHHH
Confidence 689999999999999999999999999999999865311 11112444331 111111
Q ss_pred -------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 836 -------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 836 -------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
..++..+|..+.+......+++++++...+++. +.+|+++|||||++|+|+.....+. .
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~ 177 (218)
T cd03266 99 LEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR-E 177 (218)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHH-H
Confidence 234555666665666667788888887776665 6899999999999999998777774 5
Q ss_pred HHHHHHhCCCcEEEEEeCchHHHH
Q 001405 896 TLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++..+.+ .|+++|++||+.+.+.
T Consensus 178 ~l~~~~~-~~~tii~~tH~~~~~~ 200 (218)
T cd03266 178 FIRQLRA-LGKCILFSTHIMQEVE 200 (218)
T ss_pred HHHHHHH-CCCEEEEEeCCHHHHH
Confidence 5555655 5899999999987653
No 71
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.73 E-value=1.1e-17 Score=182.50 Aligned_cols=144 Identities=17% Similarity=0.175 Sum_probs=103.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhccccccccc---cccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASS---AELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~---~~~~ 833 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+.. ...+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~t 90 (236)
T TIGR03864 11 YGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLS 90 (236)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCCCCCCcccCc
Confidence 3456789999999999999999999999999999999865310 01123444331 1111
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. ..++..+|..+.+......+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 91 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~ 170 (236)
T TIGR03864 91 VRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAA 170 (236)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHH
Confidence 21 223445555555555667788888887666665 78999999999999999988887
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+.. ++..+.++.|.++|++||+++.+..
T Consensus 171 l~~-~l~~~~~~~~~tiii~sH~~~~~~~ 198 (236)
T TIGR03864 171 IVA-HVRALCRDQGLSVLWATHLVDEIEA 198 (236)
T ss_pred HHH-HHHHHHHhCCCEEEEEecChhhHhh
Confidence 754 5555553358899999999987753
No 72
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=2.6e-17 Score=168.06 Aligned_cols=159 Identities=16% Similarity=0.240 Sum_probs=109.7
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH----------------------------HHhhcccc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG----------------------------IMAQVGSF 824 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~----------------------------~laq~g~~ 824 (1083)
...||++.++.||+|++.++++++|+||+|||||||||++..+. +-.++|..
T Consensus 14 ~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMV 93 (253)
T COG1117 14 NLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMV 93 (253)
T ss_pred eEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheee
Confidence 34578899999999999999999999999999999999996442 22344432
Q ss_pred ccc-cccccchHHHHH---------------------hhCCc----chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 825 VPA-SSAELHVLDGIY---------------------TRMGA----SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 825 vp~-~~~~~~~~~~i~---------------------~~~~~----~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
+.. ..+.++++|++- ..-.+ .|.+....-.++++.++..-|++. +.+|++|||
T Consensus 94 FQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLm 173 (253)
T COG1117 94 FQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLM 173 (253)
T ss_pred ccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEe
Confidence 211 112233333321 11122 334434444577888887777776 689999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEe
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLT 937 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~ 937 (1083)
|||+++|||.....| ..++..|.+ .-||++|||++.-+.=..++ ...+++.-+.
T Consensus 174 DEPtSALDPIsT~kI-EeLi~eLk~--~yTIviVTHnmqQAaRvSD~---taFf~~G~Lv 227 (253)
T COG1117 174 DEPTSALDPISTLKI-EELITELKK--KYTIVIVTHNMQQAARVSDY---TAFFYLGELV 227 (253)
T ss_pred cCcccccCchhHHHH-HHHHHHHHh--ccEEEEEeCCHHHHHHHhHh---hhhhcccEEE
Confidence 999999999998888 667777764 78999999999776422222 3445554443
No 73
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=9.5e-18 Score=185.09 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=102.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------hcccccccccc---ccchH--
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------QVGSFVPASSA---ELHVL-- 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------q~g~~vp~~~~---~~~~~-- 835 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.... ....|+|.... ..++.
T Consensus 11 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~~~~~~tv~e~ 90 (255)
T PRK11248 11 YGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEGLLPWRNVQDN 90 (255)
T ss_pred eCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCccCCCCcHHHH
Confidence 44567899999999999999999999999999999998763210 00123443311 11111
Q ss_pred -------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 836 -------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 836 -------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
..++.++|..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~-~ 169 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQ-T 169 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH-H
Confidence 234455666555555667788888887766665 6899999999999999998877774 5
Q ss_pred HHHHHHhCCCcEEEEEeCchHHHH
Q 001405 896 TLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++..+.+..|+++|++||+.+.+.
T Consensus 170 ~L~~~~~~~g~tviivsH~~~~~~ 193 (255)
T PRK11248 170 LLLKLWQETGKQVLLITHDIEEAV 193 (255)
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHH
Confidence 555554325899999999998653
No 74
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.73 E-value=1.5e-17 Score=182.25 Aligned_cols=140 Identities=18% Similarity=0.200 Sum_probs=100.6
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---c
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~ 831 (1083)
+..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .
T Consensus 14 ~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (243)
T TIGR02315 14 GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIER 93 (243)
T ss_pred CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCccccc
Confidence 4578999999999999999999999999999999986421 0111234444311 1
Q ss_pred cchHH-----------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 832 LHVLD-----------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 832 ~~~~~-----------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
+++.+ .++..++..+........+++++++...+++. +.+|+++|||||+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 173 (243)
T TIGR02315 94 LTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPI 173 (243)
T ss_pred ccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 12222 23344555544455566788888887777665 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+|+|+.....+ ..++..+.++.|+++|++||+.+.+
T Consensus 174 ~~LD~~~~~~l-~~~l~~~~~~~~~tiii~tH~~~~~ 209 (243)
T TIGR02315 174 ASLDPKTSKQV-MDYLKRINKEDGITVIINLHQVDLA 209 (243)
T ss_pred ccCCHHHHHHH-HHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 99999877777 4555556543588999999998875
No 75
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.73 E-value=9.6e-18 Score=183.02 Aligned_cols=154 Identities=14% Similarity=0.100 Sum_probs=108.5
Q ss_pred ecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhccccc
Q 001405 765 CSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFV 825 (1083)
Q Consensus 765 ~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~v 825 (1083)
.+.-|+.+...++.+.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+
T Consensus 20 ~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~ 99 (236)
T cd03267 20 IGSLKSLFKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVV 99 (236)
T ss_pred chhHHHHHhcccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEE
Confidence 345566666667788899999999999999999999999999999999865310 0111234
Q ss_pred c-ccc---cccchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 826 P-ASS---AELHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 826 p-~~~---~~~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
| ... ..+++.+ .++..+|..+........+++++++...+++. +.+|+++||||
T Consensus 100 ~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 179 (236)
T cd03267 100 FGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDE 179 (236)
T ss_pred cCCccccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 3 211 1112211 22334455444444556788888777666655 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.++.++++|++||+++.+.
T Consensus 180 Pt~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~~ 218 (236)
T cd03267 180 PTIGLDVVAQENIR-NFLKEYNRERGTTVLLTSHYMKDIE 218 (236)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEecCHHHHH
Confidence 99999998888775 4555555435889999999998653
No 76
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.73 E-value=1.9e-17 Score=182.31 Aligned_cols=142 Identities=18% Similarity=0.194 Sum_probs=101.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------------hhccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------------AQVGSFVPA 827 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------------aq~g~~vp~ 827 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q 92 (250)
T PRK11264 13 FHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQ 92 (250)
T ss_pred ECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEec
Confidence 3455789999999999999999999999999999999865210 111234444
Q ss_pred ccc---ccchHH----------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 828 SSA---ELHVLD----------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 828 ~~~---~~~~~~----------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
... ..++.+ .++..+|..+......+.+++++++...+++. +.+|+++||||||
T Consensus 93 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt 172 (250)
T PRK11264 93 NFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172 (250)
T ss_pred CcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 321 112222 23344455444455566788888887766665 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+. .++..+.+ .|.++|++||+.+...
T Consensus 173 ~~LD~~~~~~l~-~~l~~~~~-~~~tvi~~tH~~~~~~ 208 (250)
T PRK11264 173 SALDPELVGEVL-NTIRQLAQ-EKRTMVIVTHEMSFAR 208 (250)
T ss_pred ccCCHHHHHHHH-HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 999998777774 55666665 5889999999987653
No 77
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.73 E-value=1.5e-17 Score=181.41 Aligned_cols=142 Identities=18% Similarity=0.167 Sum_probs=101.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~~---~ 831 (1083)
+++..++++++|++.+|++++|+||||||||||||+|+++... .....|+|+... .
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 89 (236)
T cd03219 10 FGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPE 89 (236)
T ss_pred ECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccC
Confidence 3455688999999999999999999999999999999865310 111224444311 1
Q ss_pred cchH-------------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 832 LHVL-------------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 832 ~~~~-------------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
+++. ..++..+|..+......+.+++++++...+++. +.+|+++||||
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 169 (236)
T cd03219 90 LTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDE 169 (236)
T ss_pred CCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 1222 223344555444455566788888887776665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||+|+|+.....+ +.++..+.+ .|.++|++||+.+.+.
T Consensus 170 Pt~~LD~~~~~~l-~~~l~~~~~-~~~tii~vsH~~~~~~ 207 (236)
T cd03219 170 PAAGLNPEETEEL-AELIRELRE-RGITVLLVEHDMDVVM 207 (236)
T ss_pred CcccCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHHH
Confidence 9999999877777 455666665 5889999999998764
No 78
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.73 E-value=1.2e-17 Score=193.91 Aligned_cols=147 Identities=16% Similarity=0.184 Sum_probs=108.8
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS---AE 831 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~---~~ 831 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|+++.. +++.-.++|++. ..
T Consensus 12 ~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 12 EFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred EECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 3556789999999999999999999999999999999986531 111123444431 11
Q ss_pred cch-------------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 832 LHV-------------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 832 ~~~-------------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
+++ ++.++..+++.+........+++++++...+++. +.+|+++||||||+|||
T Consensus 92 ~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD 171 (402)
T PRK09536 92 FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLD 171 (402)
T ss_pred CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCC
Confidence 111 2334555666655566677888888887777766 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+.....+ ..++..+.+ .|.+||++||+++++ .++++
T Consensus 172 ~~~~~~l-~~lL~~l~~-~g~TIIivsHdl~~~~~~adr 208 (402)
T PRK09536 172 INHQVRT-LELVRRLVD-DGKTAVAAIHDLDLAARYCDE 208 (402)
T ss_pred HHHHHHH-HHHHHHHHh-cCCEEEEEECCHHHHHHhCCE
Confidence 9888877 466666765 588999999999887 45554
No 79
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.73 E-value=2.2e-17 Score=177.37 Aligned_cols=139 Identities=15% Similarity=0.153 Sum_probs=100.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~~ 832 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... ..
T Consensus 14 ~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 93 (214)
T cd03292 14 TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR 93 (214)
T ss_pred ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC
Confidence 468899999999999999999999999999999986521 0111234444321 11
Q ss_pred chH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++. ..++..+|..+........+++++++...+++. +.+|+++||||||+|+|+....
T Consensus 94 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 173 (214)
T cd03292 94 NVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTW 173 (214)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHH
Confidence 111 223445565555555566788888887666665 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+. .++..+.+ .|.++|++||+.+...
T Consensus 174 ~~~-~~l~~~~~-~~~tiiivtH~~~~~~ 200 (214)
T cd03292 174 EIM-NLLKKINK-AGTTVVVATHAKELVD 200 (214)
T ss_pred HHH-HHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 774 45555655 5889999999987764
No 80
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.73 E-value=9.2e-18 Score=172.49 Aligned_cols=134 Identities=14% Similarity=0.094 Sum_probs=89.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccc-cccchHHHHHhhCCcchhHHhchhh
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS-AELHVLDGIYTRMGASDSIQQGRST 854 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~-~~~~~~~~i~~~~~~~d~~~~~~st 854 (1083)
+++..++++++|++.+|++++|+||||+|||||||+|+++........++.... ......+..-..++. ...
T Consensus 10 ~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~-------~~q 82 (163)
T cd03216 10 FGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM-------VYQ 82 (163)
T ss_pred ECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE-------EEe
Confidence 345578899999999999999999999999999999976532111101111100 001111111111211 111
Q ss_pred hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 855 FLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 855 f~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.+ .+.++|++||+++..
T Consensus 83 LS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~~~-~~~tiii~sh~~~~~ 145 (163)
T cd03216 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLF-KVIRRLRA-QGVAVIFISHRLDEV 145 (163)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHH-HHHHHHHH-CCCEEEEEeCCHHHH
Confidence 77777776666654 6899999999999999998887774 55555555 588999999998754
No 81
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.73 E-value=2.2e-17 Score=179.32 Aligned_cols=140 Identities=18% Similarity=0.167 Sum_probs=100.8
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcccccccccc---cc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSA---EL 832 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~---~~ 832 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+... ..
T Consensus 24 ~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~ 103 (228)
T PRK10584 24 SILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL 103 (228)
T ss_pred EEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc
Confidence 588999999999999999999999999999999865310 011234444321 11
Q ss_pred chHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.+ .++..++..+.+......+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 104 tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~ 183 (228)
T PRK10584 104 NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGD 183 (228)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHH
Confidence 2222 23444555555555667788888887777665 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+ ..++..+.++.|.+||++||+.+....
T Consensus 184 ~l-~~~l~~~~~~~~~tii~~sH~~~~~~~ 212 (228)
T PRK10584 184 KI-ADLLFSLNREHGTTLILVTHDLQLAAR 212 (228)
T ss_pred HH-HHHHHHHHHhcCCEEEEEecCHHHHHh
Confidence 77 455555554358899999999987653
No 82
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.73 E-value=1.6e-17 Score=180.49 Aligned_cols=143 Identities=17% Similarity=0.195 Sum_probs=99.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~---~ 831 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+..+|+|+... .
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (230)
T TIGR03410 10 YGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGREIFPR 89 (230)
T ss_pred eCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCcccCC
Confidence 445678899999999999999999999999999999986531 1111235554421 1
Q ss_pred cchHHH------------------HHhhCC-cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 832 LHVLDG------------------IYTRMG-ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 832 ~~~~~~------------------i~~~~~-~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+++.+. ++..++ ..+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 90 ~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~ 169 (230)
T TIGR03410 90 LTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169 (230)
T ss_pred CcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 122222 222222 2223344455677788777766665 68999999999999999988877
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+. .++..+.++.++++|++||+++.+.
T Consensus 170 l~-~~l~~~~~~~~~tii~~sH~~~~~~ 196 (230)
T TIGR03410 170 IG-RVIRRLRAEGGMAILLVEQYLDFAR 196 (230)
T ss_pred HH-HHHHHHHHcCCcEEEEEeCCHHHHH
Confidence 74 5555555434899999999998764
No 83
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.73 E-value=1.1e-17 Score=175.35 Aligned_cols=146 Identities=18% Similarity=0.189 Sum_probs=104.3
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccc----cccc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSF----VPAS 828 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~----vp~~ 828 (1083)
.+.||+-.++|||||++.+|++++|+|||||||||++++|.+..- .++.|.- ++.-
T Consensus 11 ~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rl 90 (250)
T COG0411 11 SKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRL 90 (250)
T ss_pred eeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccc
Confidence 456788899999999999999999999999999999999974321 1112210 0000
Q ss_pred ccccchH---------------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcE
Q 001405 829 SAELHVL---------------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSL 874 (1083)
Q Consensus 829 ~~~~~~~---------------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sL 874 (1083)
...+++. ..++.++|..+........++.+.++...|.++ +++|.|
T Consensus 91 F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArALa~~P~l 170 (250)
T COG0411 91 FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARALATQPKL 170 (250)
T ss_pred cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHHHhcCCCE
Confidence 1111222 224445565555555555666666666666655 699999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 875 VIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 875 vllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++||||.+|+++.+...++. ++..+.+..|.+|+++-|++++..
T Consensus 171 LLLDEPaAGln~~e~~~l~~-~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 171 LLLDEPAAGLNPEETEELAE-LIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred EEecCccCCCCHHHHHHHHH-HHHHHHhcCCcEEEEEEeccHHHh
Confidence 99999999999999999964 555677656799999999998874
No 84
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2.1e-17 Score=176.37 Aligned_cols=141 Identities=18% Similarity=0.140 Sum_probs=103.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS---AEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~---~~~ 832 (1083)
++...+++|++|++.+|++++|+||||||||||+|+|+++.. ..++ .|++... ..+
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (204)
T PRK13538 11 RDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDL-LYLGHQPGIKTEL 89 (204)
T ss_pred ECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhhe-EEeCCccccCcCC
Confidence 445678999999999999999999999999999999986521 1112 2233221 011
Q ss_pred ch------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 833 HV------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 833 ~~------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
++ ++.++..+|..+......+.+++++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 90 tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~ 169 (204)
T PRK13538 90 TALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLE 169 (204)
T ss_pred cHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHH
Confidence 11 2234556666655666677888888887776665 6899999999999999998888774
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++..+.+ .+.++|++||+.+...
T Consensus 170 -~~l~~~~~-~~~tiii~sh~~~~i~ 193 (204)
T PRK13538 170 -ALLAQHAE-QGGMVILTTHQDLPVA 193 (204)
T ss_pred -HHHHHHHH-CCCEEEEEecChhhhc
Confidence 55555555 5789999999988765
No 85
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=1.7e-17 Score=190.98 Aligned_cols=146 Identities=16% Similarity=0.147 Sum_probs=108.1
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcccccccccc---ccch-
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELHV- 834 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~---~~~~- 834 (1083)
++..+++|++|++++|++++|+||||||||||||+|+++.... ....||++... .+++
T Consensus 15 ~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~tv~ 94 (356)
T PRK11650 15 GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQNYALYPHMSVR 94 (356)
T ss_pred CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCccccCCCCHH
Confidence 4567899999999999999999999999999999999763110 01124444321 1122
Q ss_pred --------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 835 --------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 835 --------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
++.++..+|+.+........+++++++...++++ +.+|+++|||||++|||+.....+.
T Consensus 95 eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~ 174 (356)
T PRK11650 95 ENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMR 174 (356)
T ss_pred HHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence 2234556677666677778889988888777776 6899999999999999999888885
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
.. +..+.++.|.++|++||+.+.+ .++++
T Consensus 175 ~~-l~~l~~~~g~tii~vTHd~~ea~~l~D~ 204 (356)
T PRK11650 175 LE-IQRLHRRLKTTSLYVTHDQVEAMTLADR 204 (356)
T ss_pred HH-HHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 54 4555554589999999998765 45553
No 86
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.6e-17 Score=181.57 Aligned_cols=142 Identities=16% Similarity=0.133 Sum_probs=101.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcccccccccc---ccch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~---~~~~ 834 (1083)
|++..+++|++|++.+|++++|+||||||||||||+|+++.... +...|+|+... ..++
T Consensus 12 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~tv 91 (239)
T cd03296 12 FGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTV 91 (239)
T ss_pred ECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEecCCcccCCCCH
Confidence 44567899999999999999999999999999999998763110 01123443311 1112
Q ss_pred H-------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 835 L-------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 835 ~-------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
. ..++..++..+.......++++++++...+++. +.+|+++|||||++|+|+..
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 1 223444555444455566788888887777765 68899999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
...+ ..++..+.++.|.+||++||+.+..
T Consensus 172 ~~~l-~~~l~~~~~~~~~tvii~sH~~~~~ 200 (239)
T cd03296 172 RKEL-RRWLRRLHDELHVTTVFVTHDQEEA 200 (239)
T ss_pred HHHH-HHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 7777 4556556553488999999998764
No 87
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.72 E-value=1.5e-17 Score=191.22 Aligned_cols=148 Identities=17% Similarity=0.141 Sum_probs=109.4
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhccccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSAE---LH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~~---~~ 833 (1083)
.+++..+++|++|++++|++++|+||||||||||||+|+++... .+..+|+++...- ++
T Consensus 13 ~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~t 92 (353)
T TIGR03265 13 RFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQSYALFPNLT 92 (353)
T ss_pred EeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCc
Confidence 34556789999999999999999999999999999999976311 1112344443221 11
Q ss_pred h---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 V---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+ ++.++..++..+.+......+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 93 v~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~ 172 (353)
T TIGR03265 93 VADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREH 172 (353)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 2 2335556666666667777888888887777776 68999999999999999998888
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+.. .+..+.++.|.|+|++||+.+.+ .++++
T Consensus 173 l~~-~L~~l~~~~~~tvi~vTHd~~ea~~l~d~ 204 (353)
T TIGR03265 173 LRT-EIRQLQRRLGVTTIMVTHDQEEALSMADR 204 (353)
T ss_pred HHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 854 44455554689999999999875 45553
No 88
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.72 E-value=2.6e-17 Score=187.98 Aligned_cols=143 Identities=17% Similarity=0.157 Sum_probs=107.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhccccccccccc---c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSAE---L 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~~---~ 832 (1083)
..+++||+|++++|++++|+||||||||||||+|+++.- ..+...++|+.... .
T Consensus 18 ~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~ 97 (343)
T TIGR02314 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC
Confidence 368999999999999999999999999999999986531 01112344443111 1
Q ss_pred ch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++ +..++..+|..+......+.+++++++...|+++ +++|+++|+||||+|||+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~ 177 (343)
T TIGR02314 98 TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQ 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 11 1234566777777777788899999888777776 6899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
.+ ..++..+.++.|.|||++||+++.+. +++
T Consensus 178 ~i-~~lL~~l~~~~g~tiiliTH~~~~v~~~~d 209 (343)
T TIGR02314 178 SI-LELLKEINRRLGLTILLITHEMDVVKRICD 209 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 87 45666676545899999999998763 444
No 89
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.72 E-value=2e-17 Score=176.88 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=102.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------hhcccccccccc---ccchH
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------AQVGSFVPASSA---ELHVL 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------aq~g~~vp~~~~---~~~~~ 835 (1083)
+++..+++|++|++.+|++++|+||||||||||+++|+++... ....+|++.... ..++.
T Consensus 12 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~tv~ 91 (207)
T PRK13539 12 RGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVA 91 (207)
T ss_pred ECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCCCcCCCCCcHH
Confidence 4456789999999999999999999999999999999865310 111123432211 11222
Q ss_pred -----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 836 -----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 836 -----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
..++..+|..+........+++++++...+++. +.+|+++|||||++|+|+.....+ ..++
T Consensus 92 ~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~~~l 170 (207)
T PRK13539 92 ENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALF-AELI 170 (207)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 223444555554455566788888887776665 688999999999999999888777 4555
Q ss_pred HHHHhCCCcEEEEEeCchHHHH
Q 001405 898 DYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+.+ .|.++|++||+.+...
T Consensus 171 ~~~~~-~~~tiii~sH~~~~~~ 191 (207)
T PRK13539 171 RAHLA-QGGIVIAATHIPLGLP 191 (207)
T ss_pred HHHHH-CCCEEEEEeCCchhhc
Confidence 55555 5899999999988765
No 90
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=1.6e-17 Score=184.71 Aligned_cols=144 Identities=17% Similarity=0.093 Sum_probs=104.1
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccc
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASS 829 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~ 829 (1083)
+.+++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|...
T Consensus 32 ~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~ 111 (269)
T cd03294 32 KKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSF 111 (269)
T ss_pred hhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCc
Confidence 345667789999999999999999999999999999999865310 11123444331
Q ss_pred c---ccchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 830 A---ELHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 830 ~---~~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
. .+++. ..++..++..+.+......+++++++...+++. +.+|+++|||||++|+
T Consensus 112 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~L 191 (269)
T cd03294 112 ALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSAL 191 (269)
T ss_pred ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccC
Confidence 1 11111 223445666655666667788888887776665 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|+.....+. .++..+.+..|.++|++||+++..
T Consensus 192 D~~~~~~l~-~~l~~~~~~~g~tiii~tH~~~~~ 224 (269)
T cd03294 192 DPLIRREMQ-DELLRLQAELQKTIVFITHDLDEA 224 (269)
T ss_pred CHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHH
Confidence 998777774 555555543589999999998765
No 91
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.72 E-value=2.3e-17 Score=178.30 Aligned_cols=141 Identities=17% Similarity=0.182 Sum_probs=98.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~---~ 831 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. ..+.-.|+|+... .
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 89 (222)
T cd03224 10 YGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRRIFPE 89 (222)
T ss_pred cCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccccCCC
Confidence 345568899999999999999999999999999999986531 0111234444321 1
Q ss_pred cchHHH-------------------HHhhC-CcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 832 LHVLDG-------------------IYTRM-GASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 832 ~~~~~~-------------------i~~~~-~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+++.+. ++..+ +..+........+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 90 ~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 169 (222)
T cd03224 90 LTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVE 169 (222)
T ss_pred CcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHH
Confidence 122222 22223 22333344455677888777776665 6889999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.+. .++..+.+ .++++|++||+++..
T Consensus 170 ~l~-~~l~~~~~-~~~tiii~sH~~~~~ 195 (222)
T cd03224 170 EIF-EAIRELRD-EGVTILLVEQNARFA 195 (222)
T ss_pred HHH-HHHHHHHH-CCCEEEEEeCCHHHH
Confidence 774 55555665 589999999998864
No 92
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.72 E-value=2.7e-17 Score=170.77 Aligned_cols=133 Identities=14% Similarity=0.156 Sum_probs=90.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccc----------cccchH---HHHHhhCCcc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASS----------AELHVL---DGIYTRMGAS 845 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~----------~~~~~~---~~i~~~~~~~ 845 (1083)
..++++++|++.+|++++|+||||||||||||+|+++....+....+.... ..+.++ ..++. ....
T Consensus 15 ~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~ 93 (173)
T cd03246 15 PPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFS-GSIA 93 (173)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCCcccc-CcHH
Confidence 458889999999999999999999999999999987642211101111000 000000 00111 1122
Q ss_pred hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 846 DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 846 d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+++ +++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.+ .|.++|++||+.+....
T Consensus 94 ~~l------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~-~~l~~~~~-~~~tii~~sh~~~~~~~ 161 (173)
T cd03246 94 ENI------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN-QAIAALKA-AGATRIVIAHRPETLAS 161 (173)
T ss_pred HHC------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHH-HHHHHHHh-CCCEEEEEeCCHHHHHh
Confidence 222 67777776666664 7899999999999999998888775 45555655 58999999999987654
No 93
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=4.6e-17 Score=177.32 Aligned_cols=139 Identities=15% Similarity=0.118 Sum_probs=100.8
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---ccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---ELH 833 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~~~ 833 (1083)
.++++++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .++
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRT 98 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCc
Confidence 68899999999999999999999999999999986531 0111234444321 112
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. ..++.+++..+......+.+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 99 ~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~ 178 (233)
T cd03258 99 VFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQS 178 (233)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHH
Confidence 22 223445565555556667788888877776665 68999999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+. .++..+.++.|.++|++||+.+.+.
T Consensus 179 l~-~~l~~~~~~~~~tvii~sH~~~~~~ 205 (233)
T cd03258 179 IL-ALLRDINRELGLTIVLITHEMEVVK 205 (233)
T ss_pred HH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 74 5555555434899999999998753
No 94
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.7e-17 Score=181.61 Aligned_cols=143 Identities=17% Similarity=0.206 Sum_probs=102.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcc-ccccccc---cc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVG-SFVPASS---AE 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g-~~vp~~~---~~ 831 (1083)
+++..++++++|++.+|++++|+||||||||||+|+|+++... .+.+ .|+|... ..
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (255)
T PRK11300 15 FGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVRLFRE 94 (255)
T ss_pred ECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcccCCC
Confidence 3456789999999999999999999999999999999865310 1111 2344331 11
Q ss_pred cchHH------------------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcE
Q 001405 832 LHVLD------------------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSL 874 (1083)
Q Consensus 832 ~~~~~------------------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sL 874 (1083)
+++.+ .++..+|..+........+++++++...+++. +.+|++
T Consensus 95 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 174 (255)
T PRK11300 95 MTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174 (255)
T ss_pred CcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 12222 22334555555555666788888887776665 689999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 875 VIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 875 vllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|||||++|+|+.....+ ..++..+.++.|++||++||+.+.+.
T Consensus 175 lllDEPt~~LD~~~~~~l-~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 175 LMLDEPAAGLNPKETKEL-DELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred EEEcCCccCCCHHHHHHH-HHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 999999999999877777 55666665534899999999998763
No 95
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.72 E-value=2.6e-17 Score=178.33 Aligned_cols=145 Identities=17% Similarity=0.193 Sum_probs=102.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~ 833 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+..+|++..... .+
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~t 96 (225)
T PRK10247 17 AGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDT 96 (225)
T ss_pred eCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEeccccccccc
Confidence 3456799999999999999999999999999999999875310 1112344433110 01
Q ss_pred h-------------------HHHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 834 V-------------------LDGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 834 ~-------------------~~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
+ +..++..++..+ ........+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 97 v~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 176 (225)
T PRK10247 97 VYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176 (225)
T ss_pred HHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 1 123445566542 3455566788887777666665 689999999999999999877766
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
. .++..+.++.|.++|++||+.+....+
T Consensus 177 ~-~~l~~~~~~~~~tvii~sh~~~~~~~~ 204 (225)
T PRK10247 177 N-EIIHRYVREQNIAVLWVTHDKDEINHA 204 (225)
T ss_pred H-HHHHHHHHhcCCEEEEEECChHHHHhC
Confidence 4 455555543588999999999876543
No 96
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.72 E-value=2.7e-17 Score=170.81 Aligned_cols=127 Identities=17% Similarity=0.267 Sum_probs=91.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc--------------------ccccccccccchHHH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG--------------------SFVPASSAELHVLDG 837 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g--------------------~~vp~~~~~~~~~~~ 837 (1083)
+..++++++|++.+|++++|+||||||||||||+|+++.... -| .|+|++. .
T Consensus 12 ~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~i~~~~q~~-------~ 83 (173)
T cd03230 12 KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPD-SGEIKVLGKDIKKEPEEVKRRIGYLPEEP-------S 83 (173)
T ss_pred CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CeEEEECCEEcccchHhhhccEEEEecCC-------c
Confidence 446889999999999999999999999999999998753211 11 1122110 1
Q ss_pred HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 838 IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 838 i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
++..+...+++. +++++++...+++. +.+|+++|||||++|+|+.....+. .+++.+.+ .|.++|++||+.+
T Consensus 84 ~~~~~tv~~~~~-----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~-~~l~~~~~-~g~tiii~th~~~ 156 (173)
T cd03230 84 LYENLTVRENLK-----LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW-ELLRELKK-EGKTILLSSHILE 156 (173)
T ss_pred cccCCcHHHHhh-----cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHH-CCCEEEEECCCHH
Confidence 222223333332 66666666655554 6899999999999999998888774 55556665 4889999999988
Q ss_pred HHH
Q 001405 917 IAD 919 (1083)
Q Consensus 917 l~~ 919 (1083)
+..
T Consensus 157 ~~~ 159 (173)
T cd03230 157 EAE 159 (173)
T ss_pred HHH
Confidence 664
No 97
>PRK10908 cell division protein FtsE; Provisional
Probab=99.72 E-value=5.1e-17 Score=175.66 Aligned_cols=140 Identities=14% Similarity=0.120 Sum_probs=102.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---c
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~ 831 (1083)
+..+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+|+... .
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (222)
T PRK10908 14 GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMD 93 (222)
T ss_pred CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCcccccc
Confidence 4568999999999999999999999999999999985421 1111234444321 1
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.++. ..++.+++..+......+.+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~ 173 (222)
T PRK10908 94 RTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALS 173 (222)
T ss_pred ccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHH
Confidence 1221 223445555555555667888888887777766 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+. .++..+.+ .+.++|++||+++...
T Consensus 174 ~~l~-~~l~~~~~-~~~tiii~sH~~~~~~ 201 (222)
T PRK10908 174 EGIL-RLFEEFNR-VGVTVLMATHDIGLIS 201 (222)
T ss_pred HHHH-HHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 7775 45555655 5889999999998764
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.72 E-value=3e-17 Score=179.65 Aligned_cols=142 Identities=18% Similarity=0.223 Sum_probs=102.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcccccccccc---
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------AQVGSFVPASSA--- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------aq~g~~vp~~~~--- 830 (1083)
+++..+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+...
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 90 (240)
T PRK09493 11 FGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFP 90 (240)
T ss_pred ECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEecccccCC
Confidence 3456789999999999999999999999999999999865310 111234443311
Q ss_pred ccchH----------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVL----------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~----------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
..++. ..++.++|..+.+....+.+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 91 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 91 HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 11111 224455566555556667788888887766665 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+. .++..+.+ .+.++|++||+.+...
T Consensus 171 ~~~~l~-~~l~~~~~-~~~tiii~sH~~~~~~ 200 (240)
T PRK09493 171 LRHEVL-KVMQDLAE-EGMTMVIVTHEIGFAE 200 (240)
T ss_pred HHHHHH-HHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 877775 45656665 5889999999998764
No 99
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2e-17 Score=189.77 Aligned_cols=148 Identities=16% Similarity=0.085 Sum_probs=108.1
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hccccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSAE---LH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~~---~~ 833 (1083)
.+++..+++|++|++.+|++++|+||||||||||||+|+++.... +.-.++++..+- ++
T Consensus 15 ~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~t 94 (351)
T PRK11432 15 RFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQSYALFPHMS 94 (351)
T ss_pred EECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCcccCCCCC
Confidence 345667899999999999999999999999999999998764210 111234443221 12
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. +.++..++..+........+++++++...+++. +.+|+++|||||++|||+.....
T Consensus 95 v~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~ 174 (351)
T PRK11432 95 LGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174 (351)
T ss_pred HHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHH
Confidence 22 224445566555556667888888887777766 68999999999999999998888
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+.. .+..+.++.|.++|++|||.+.+ .++++
T Consensus 175 l~~-~l~~l~~~~g~tii~vTHd~~e~~~laD~ 206 (351)
T PRK11432 175 MRE-KIRELQQQFNITSLYVTHDQSEAFAVSDT 206 (351)
T ss_pred HHH-HHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 854 55555554689999999999876 45554
No 100
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.72 E-value=3e-17 Score=174.72 Aligned_cols=140 Identities=16% Similarity=0.143 Sum_probs=100.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---ELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~~ 833 (1083)
++++.+++|++|++.+|++++|+||||+|||||+++|+++.. ..+...|+|+... ..+
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (201)
T cd03231 10 RDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLS 89 (201)
T ss_pred eCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEeccccccCCCcC
Confidence 445678999999999999999999999999999999986531 1111123433211 112
Q ss_pred h---------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 834 V---------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 834 ~---------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
+ ++.++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .++
T Consensus 90 v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~-~~l 168 (201)
T cd03231 90 VLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFA-EAM 168 (201)
T ss_pred HHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHH-HHH
Confidence 2 2234455666555555667788888887776665 6899999999999999998888775 455
Q ss_pred HHHHhCCCcEEEEEeCchHH
Q 001405 898 DYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l 917 (1083)
..+.+ .|+++|++||+...
T Consensus 169 ~~~~~-~g~tiii~sH~~~~ 187 (201)
T cd03231 169 AGHCA-RGGMVVLTTHQDLG 187 (201)
T ss_pred HHHHh-CCCEEEEEecCchh
Confidence 55555 58899999998653
No 101
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.72 E-value=2.3e-17 Score=181.53 Aligned_cols=143 Identities=22% Similarity=0.251 Sum_probs=104.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------hcccccccccc---cc--ch-------
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------QVGSFVPASSA---EL--HV------- 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------q~g~~vp~~~~---~~--~~------- 834 (1083)
+++..++++++|++.+|++++|+||||||||||||+|+++.... ....|+|+... .+ .+
T Consensus 14 ~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~~~i~~v~q~~~~~~~l~~~~~~~~~~~ 93 (251)
T PRK09544 14 FGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYLDTTLPLTVNRFLRLR 93 (251)
T ss_pred ECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCccCEEEeccccccccccChhHHHHHhcc
Confidence 44567899999999999999999999999999999998764211 01134444311 10 11
Q ss_pred -------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001405 835 -------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC 906 (1083)
Q Consensus 835 -------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~ 906 (1083)
+..++..++..+.+......+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.+..|.
T Consensus 94 ~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~-~~L~~~~~~~g~ 172 (251)
T PRK09544 94 PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALY-DLIDQLRRELDC 172 (251)
T ss_pred ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHH-HHHHHHHHhcCC
Confidence 1234456676666666778888888887777665 6899999999999999998877774 455555542488
Q ss_pred EEEEEeCchHHHH
Q 001405 907 MVLFVTHYPKIAD 919 (1083)
Q Consensus 907 ~vl~~TH~~~l~~ 919 (1083)
++|++||+.+.+.
T Consensus 173 tiiivsH~~~~i~ 185 (251)
T PRK09544 173 AVLMVSHDLHLVM 185 (251)
T ss_pred EEEEEecCHHHHH
Confidence 9999999998753
No 102
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.72 E-value=2.3e-17 Score=189.42 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=110.0
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------H----hhcccccccccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------M----AQVGSFVPASSA 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------l----aq~g~~vp~~~~ 830 (1083)
.++.+.+++|++|++++|++++|+||||||||||||+|+++.. + .+..+|+++...
T Consensus 2 ~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~ 81 (363)
T TIGR01186 2 KTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA 81 (363)
T ss_pred ccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc
Confidence 3567778999999999999999999999999999999986531 1 112234544321
Q ss_pred c---cch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 831 E---LHV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 831 ~---~~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
- +++ +..++..+|+.+........+++++++...++++ +.+|+++|||||++|+|
T Consensus 82 l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD 161 (363)
T TIGR01186 82 LFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALD 161 (363)
T ss_pred CCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 1 111 1234556677666777788899999888877776 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
+.....+...+. .+.+..+.|+||+||+++.+ .+++
T Consensus 162 ~~~r~~l~~~l~-~l~~~~~~Tii~vTHd~~ea~~~~d 198 (363)
T TIGR01186 162 PLIRDSMQDELK-KLQATLQKTIVFITHDLDEAIRIGD 198 (363)
T ss_pred HHHHHHHHHHHH-HHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999888865554 45443589999999999875 4444
No 103
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.72 E-value=2.5e-17 Score=178.15 Aligned_cols=142 Identities=15% Similarity=0.136 Sum_probs=102.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------hcccccccccc---ccchH-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------QVGSFVPASSA---ELHVL- 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------q~g~~vp~~~~---~~~~~- 835 (1083)
++++.++++++|++.+|++++|+||||+||||||++|+++.... +...|+|.... ..++.
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~t~~~ 89 (223)
T TIGR03740 10 FGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPPLYENLTARE 89 (223)
T ss_pred ECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCCccccCCHHH
Confidence 34567889999999999999999999999999999998753110 11123443311 11222
Q ss_pred ----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001405 836 ----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLD 898 (1083)
Q Consensus 836 ----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~ 898 (1083)
..++.++|..+........+++++++...+++. +.+|+++|||||++|+|+.....+ ..++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~L~ 168 (223)
T TIGR03740 90 NLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQEL-RELIR 168 (223)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHH-HHHHH
Confidence 234455666655556667788887777666665 689999999999999999877777 45555
Q ss_pred HHHhCCCcEEEEEeCchHHHH
Q 001405 899 YLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 899 ~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+.+ .|.++|++||+++...
T Consensus 169 ~~~~-~~~tiii~sH~~~~~~ 188 (223)
T TIGR03740 169 SFPE-QGITVILSSHILSEVQ 188 (223)
T ss_pred HHHH-CCCEEEEEcCCHHHHH
Confidence 5655 5889999999998763
No 104
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.8e-17 Score=184.42 Aligned_cols=143 Identities=14% Similarity=0.111 Sum_probs=104.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccccccc----ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASS----AEL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~----~~~ 832 (1083)
..+++||+|++.+|++++|+||||||||||||+|+++.. +.+...|+|+.. ...
T Consensus 20 ~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~ 99 (287)
T PRK13637 20 KKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE 99 (287)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccc
Confidence 468999999999999999999999999999999986531 111223555542 111
Q ss_pred chH---------------------HHHHhhCCcc--hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 833 HVL---------------------DGIYTRMGAS--DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 833 ~~~---------------------~~i~~~~~~~--d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++. ..++..+|.. +........+++++++...+++. +.+|+++|||||++|||+..
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 222 2334455664 33455567888888888777776 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
...+ ..++..+.++.|.|||++||+++.+. +++
T Consensus 180 ~~~l-~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 213 (287)
T PRK13637 180 RDEI-LNKIKELHKEYNMTIILVSHSMEDVAKLAD 213 (287)
T ss_pred HHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 8777 45666665535899999999988763 443
No 105
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.72 E-value=2.6e-17 Score=183.34 Aligned_cols=142 Identities=15% Similarity=0.070 Sum_probs=101.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhcccccccccc---
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASSA--- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~~--- 830 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+...
T Consensus 11 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 90 (271)
T PRK13638 11 YQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI 90 (271)
T ss_pred cCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc
Confidence 455679999999999999999999999999999999986431 0111234554321
Q ss_pred -ccchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 -ELHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 -~~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
...+.+ .++..+|..+......+.+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~ 170 (271)
T PRK13638 91 FYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPA 170 (271)
T ss_pred ccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 001111 23334444444444556788888887776665 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+. .++..+.+ .|.++|++||+++.+.
T Consensus 171 ~~~~l~-~~l~~~~~-~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 171 GRTQMI-AIIRRIVA-QGNHVIISSHDIDLIY 200 (271)
T ss_pred HHHHHH-HHHHHHHH-CCCEEEEEeCCHHHHH
Confidence 877774 55555655 5889999999998763
No 106
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.71 E-value=3.6e-17 Score=176.55 Aligned_cols=138 Identities=17% Similarity=0.150 Sum_probs=99.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcccccccccc---ccch--
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASSA---ELHV-- 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~~---~~~~-- 834 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+++... ..++
T Consensus 15 ~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~ 94 (220)
T cd03263 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYCPQFDALFDELTVRE 94 (220)
T ss_pred ceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEecCcCCccccCCHHH
Confidence 5688999999999999999999999999999999865310 111124443311 1111
Q ss_pred -------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 835 -------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 835 -------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
+..++..++..+.......++++++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~- 173 (220)
T cd03263 95 HLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIW- 173 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHH-
Confidence 1234455666555555667788888777666654 7899999999999999998777774
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++..+.+ +.++|++||+++.+.
T Consensus 174 ~~l~~~~~--~~tii~~sH~~~~~~ 196 (220)
T cd03263 174 DLILEVRK--GRSIILTTHSMDEAE 196 (220)
T ss_pred HHHHHHhc--CCEEEEEcCCHHHHH
Confidence 55555554 589999999998764
No 107
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.71 E-value=3.2e-17 Score=174.34 Aligned_cols=142 Identities=18% Similarity=0.210 Sum_probs=96.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-HHhhccc-cccc---------cc--cccchH---HHHH
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-IMAQVGS-FVPA---------SS--AELHVL---DGIY 839 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-~laq~g~-~vp~---------~~--~~~~~~---~~i~ 839 (1083)
+++..+++|++|++.+|++++|+||||||||||+|+|+++. .-...|. .+.. .. ..+.++ ..++
T Consensus 10 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (200)
T cd03217 10 VGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEI 89 (200)
T ss_pred eCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhc
Confidence 34456899999999999999999999999999999998763 1111121 0000 00 001110 1122
Q ss_pred hhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 840 TRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 840 ~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
..+...+.+......+++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+.+ .++++|++||+++..
T Consensus 90 ~~~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l-~~~L~~~~~-~~~tiii~sh~~~~~ 167 (200)
T cd03217 90 PGVKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLV-AEVINKLRE-EGKSVLIITHYQRLL 167 (200)
T ss_pred cCccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHH-HHHHHHHHH-CCCEEEEEecCHHHH
Confidence 22223333333334678888777666665 689999999999999999877777 455555665 588999999999876
Q ss_pred H
Q 001405 919 D 919 (1083)
Q Consensus 919 ~ 919 (1083)
.
T Consensus 168 ~ 168 (200)
T cd03217 168 D 168 (200)
T ss_pred H
Confidence 5
No 108
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.71 E-value=1.9e-17 Score=185.15 Aligned_cols=150 Identities=17% Similarity=0.148 Sum_probs=111.8
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh------------------cccccccccc---c
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ------------------VGSFVPASSA---E 831 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq------------------~g~~vp~~~~---~ 831 (1083)
.+.||+..+++|++|++++|++++|+||||||||||||+||++.-... --.+|++.++ .
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ~yALyPh 89 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQNYALYPH 89 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeCCccccCC
Confidence 445665559999999999999999999999999999999998753211 1123333332 2
Q ss_pred cchHHH---------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVLDG---------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~~~---------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++++++ +...+++.+.+....+.++++.+|...+.++ +.+|+++|||||.+.||..-.
T Consensus 90 mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR 169 (338)
T COG3839 90 MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLR 169 (338)
T ss_pred CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHH
Confidence 233332 3445677777777788889888887777776 689999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
..+...+ ..+.++.|.|+|++|||...+. ++++
T Consensus 170 ~~mr~ei-~~lh~~l~~T~IYVTHDq~EAmtladr 203 (338)
T COG3839 170 VLMRSEI-KKLHERLGTTTIYVTHDQVEAMTLADR 203 (338)
T ss_pred HHHHHHH-HHHHHhcCCcEEEEcCCHHHHHhhCCE
Confidence 8885544 4466667999999999987665 5443
No 109
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.71 E-value=5.1e-17 Score=176.27 Aligned_cols=141 Identities=15% Similarity=0.160 Sum_probs=101.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-----HHh----------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-----IMA----------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-----~la----------------------q~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++. ... +...|+|+.
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 89 (227)
T cd03260 10 YGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQK 89 (227)
T ss_pred cCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecC
Confidence 45567899999999999999999999999999999999875 210 011244443
Q ss_pred cc--ccchHH----------------------HHHhhCCcchhHHhc--hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 829 SA--ELHVLD----------------------GIYTRMGASDSIQQG--RSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 829 ~~--~~~~~~----------------------~i~~~~~~~d~~~~~--~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
.. ..++.+ .++..+|..+..... ...+++++++...+++. +.+|+++||||||
T Consensus 90 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt 169 (227)
T cd03260 90 PNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPT 169 (227)
T ss_pred chhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 11 112211 234445555444444 37888888887777765 6889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ ..++..+.+ . .++|++||+.+.+.
T Consensus 170 ~~LD~~~~~~l-~~~l~~~~~-~-~tii~~sH~~~~~~ 204 (227)
T cd03260 170 SALDPISTAKI-EELIAELKK-E-YTIVIVTHNMQQAA 204 (227)
T ss_pred ccCCHHHHHHH-HHHHHHHhh-C-cEEEEEeccHHHHH
Confidence 99999877777 455556655 4 89999999998653
No 110
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.3e-17 Score=182.76 Aligned_cols=141 Identities=16% Similarity=0.134 Sum_probs=102.3
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc----cc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA----EL 832 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~----~~ 832 (1083)
+..+++|++|++.+|++++|+||||||||||||+|+++.. +.+...|+|+... ..
T Consensus 14 ~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 93 (274)
T PRK13644 14 GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR 93 (274)
T ss_pred CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhcccc
Confidence 3458999999999999999999999999999999986521 1111234444311 11
Q ss_pred chHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.+ .++..+|..+........+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 94 tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~ 173 (274)
T PRK13644 94 TVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGI 173 (274)
T ss_pred hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 2222 23344555555555567788888887777765 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+ +.++..+.+ .|.++|++||+++.+..
T Consensus 174 ~l-~~~l~~l~~-~g~til~~tH~~~~~~~ 201 (274)
T PRK13644 174 AV-LERIKKLHE-KGKTIVYITHNLEELHD 201 (274)
T ss_pred HH-HHHHHHHHh-CCCEEEEEecCHHHHhh
Confidence 76 555666665 58999999999987653
No 111
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3.9e-17 Score=178.83 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=102.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~---~ 831 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .
T Consensus 13 ~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (241)
T PRK10895 13 YKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEASIFRR 92 (241)
T ss_pred eCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCccccc
Confidence 345678999999999999999999999999999999986531 0111234444321 1
Q ss_pred cchHH----------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 832 LHVLD----------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 832 ~~~~~----------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
.++.+ .++..+|..+........+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 93 ~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~ 172 (241)
T PRK10895 93 LSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIS 172 (241)
T ss_pred CcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 12222 23344444444444556788888887766665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
...+ ..++..+.+ .|.++|++||+.+.. .+++
T Consensus 173 ~~~l-~~~l~~~~~-~g~tiii~sH~~~~~~~~~d 205 (241)
T PRK10895 173 VIDI-KRIIEHLRD-SGLGVLITDHNVRETLAVCE 205 (241)
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEEcCHHHHHHhcC
Confidence 7777 456666665 589999999998644 4443
No 112
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.9e-17 Score=183.64 Aligned_cols=140 Identities=18% Similarity=0.165 Sum_probs=103.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc----cccch
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS----AELHV 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~----~~~~~ 834 (1083)
.++++|++|++.+|++++|+||||+|||||||+|+++.. ..+...|+|... ...++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv 99 (279)
T PRK13635 20 TYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATV 99 (279)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccH
Confidence 468899999999999999999999999999999986531 111123444331 11122
Q ss_pred H---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 L---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
. ..++..+|+.+.+......+++++++...+++. +.+|+|||||||++|||+.....+
T Consensus 100 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 179 (279)
T PRK13635 100 QDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREV 179 (279)
T ss_pred HHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 2 234445566666666677888888887777766 689999999999999999888777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..++..+.++.|+|||++||+++...
T Consensus 180 -~~~l~~l~~~~~~tilivsH~~~~~~ 205 (279)
T PRK13635 180 -LETVRQLKEQKGITVLSITHDLDEAA 205 (279)
T ss_pred -HHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 45666666534899999999998765
No 113
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=3e-17 Score=190.02 Aligned_cols=148 Identities=19% Similarity=0.185 Sum_probs=107.1
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~ 833 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+++... .++
T Consensus 12 ~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~t 91 (369)
T PRK11000 12 AYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQSYALYPHLS 91 (369)
T ss_pred EeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeCCcccCCCCC
Confidence 34566789999999999999999999999999999999876311 011124444321 112
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. ..++..++..+........+++++++...+++. +.+|+++|||||++|||+.....
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~ 171 (369)
T PRK11000 92 VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (369)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 22 224455666655666677888888887777766 68999999999999999988887
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+.. ++..+.++.|.++|++||+.+.+ .++++
T Consensus 172 l~~-~L~~l~~~~g~tvI~vTHd~~~~~~~~d~ 203 (369)
T PRK11000 172 MRI-EISRLHKRLGRTMIYVTHDQVEAMTLADK 203 (369)
T ss_pred HHH-HHHHHHHHhCCEEEEEeCCHHHHHHhCCE
Confidence 754 55555543589999999999765 45543
No 114
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.71 E-value=3.8e-17 Score=173.73 Aligned_cols=144 Identities=16% Similarity=0.104 Sum_probs=101.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS---AEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~---~~~ 832 (1083)
+++..++++++|++.+|++++|+||||||||||+++|+++.. ..++ .|+|... ...
T Consensus 11 ~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i-~~~~q~~~~~~~~ 89 (200)
T PRK13540 11 YHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQL-CFVGHRSGINPYL 89 (200)
T ss_pred eCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhhe-EEeccccccCcCC
Confidence 345678999999999999999999999999999999986531 1122 2344321 112
Q ss_pred chH----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 833 HVL----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 833 ~~~----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
++. +.++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .
T Consensus 90 tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~-~ 168 (200)
T PRK13540 90 TLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTII-T 168 (200)
T ss_pred CHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHH-H
Confidence 222 223444455444444556777777666655554 7899999999999999998777774 4
Q ss_pred HHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 896 TLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
++..+.+ .|+++|++||+.+....+|
T Consensus 169 ~l~~~~~-~~~tiii~sh~~~~~~~~d 194 (200)
T PRK13540 169 KIQEHRA-KGGAVLLTSHQDLPLNKAD 194 (200)
T ss_pred HHHHHHH-cCCEEEEEeCCchhccccc
Confidence 5555555 5889999999988776443
No 115
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3.4e-17 Score=182.64 Aligned_cols=143 Identities=15% Similarity=0.092 Sum_probs=103.9
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc----cccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS----AELH 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~----~~~~ 833 (1083)
...+++|++|++.+|++++|+||||||||||+++|+++.. ..+.-.|+|+.. ...+
T Consensus 17 ~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 96 (274)
T PRK13647 17 GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSST 96 (274)
T ss_pred CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCc
Confidence 3568999999999999999999999999999999986531 011123444432 1112
Q ss_pred hHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+.+ .++..+|..+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 97 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~ 176 (274)
T PRK13647 97 VWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQET 176 (274)
T ss_pred HHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHH
Confidence 222 23344555555555667888888887777766 68999999999999999988887
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
+ ..++..+.+ .|+|||++||+++.+ .+++
T Consensus 177 l-~~~l~~~~~-~g~tili~tH~~~~~~~~~d 206 (274)
T PRK13647 177 L-MEILDRLHN-QGKTVIVATHDVDLAAEWAD 206 (274)
T ss_pred H-HHHHHHHHH-CCCEEEEEeCCHHHHHHhCC
Confidence 7 455656665 489999999999876 3443
No 116
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.71 E-value=2.5e-17 Score=189.56 Aligned_cols=147 Identities=18% Similarity=0.138 Sum_probs=107.8
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh--------------------ccccccccccc---
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ--------------------VGSFVPASSAE--- 831 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq--------------------~g~~vp~~~~~--- 831 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++..... .-.++++....
T Consensus 14 ~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~ 93 (362)
T TIGR03258 14 AYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93 (362)
T ss_pred EECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCcccCCC
Confidence 3455678999999999999999999999999999999997643211 01233333211
Q ss_pred cch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++ ++.++..+++.+........+++++++...+++. +.+|+++|||||++|||+...
T Consensus 94 ~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r 173 (362)
T TIGR03258 94 LKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173 (362)
T ss_pred CcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHH
Confidence 111 2234555666666666777888888887777766 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCC-CcEEEEEeCchHHHH-Hhh
Q 001405 890 VAIAYATLDYLLEHK-KCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~-~~~vl~~TH~~~l~~-l~~ 922 (1083)
..+. ..+..+.++. |.|+|++||+++.+. +++
T Consensus 174 ~~l~-~~l~~l~~~~~g~til~vTHd~~ea~~l~d 207 (362)
T TIGR03258 174 ANMR-EEIAALHEELPELTILCVTHDQDDALTLAD 207 (362)
T ss_pred HHHH-HHHHHHHHhCCCCEEEEEeCCHHHHHHhCC
Confidence 8885 4555565534 799999999998763 444
No 117
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.71 E-value=3.6e-17 Score=180.89 Aligned_cols=144 Identities=16% Similarity=0.130 Sum_probs=102.1
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccc---cc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASS---AE 831 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~---~~ 831 (1083)
.++++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|... ..
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (258)
T PRK13548 11 RLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90 (258)
T ss_pred EeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCCC
Confidence 34556789999999999999999999999999999999865310 11122444431 11
Q ss_pred cchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCC-------CCcEEEEeCCCCC
Q 001405 832 LHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRNCT-------AQSLVIVDELGRG 883 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~-------~~sLvllDEp~~G 883 (1083)
.++.+ .++..+|..+........+++++++...+++.+. +|+++||||||+|
T Consensus 91 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~ 170 (258)
T PRK13548 91 FTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSA 170 (258)
T ss_pred CCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCccc
Confidence 12222 2334445544445555678888888877777643 8999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+.....+. .++..+.+..|.+||++||+++...
T Consensus 171 LD~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~ 205 (258)
T PRK13548 171 LDLAHQHHVL-RLARQLAHERGLAVIVVLHDLNLAA 205 (258)
T ss_pred CCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHH
Confidence 9998877775 4555555225889999999988764
No 118
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.71 E-value=4.8e-17 Score=172.71 Aligned_cols=139 Identities=17% Similarity=0.118 Sum_probs=99.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---ELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~~ 833 (1083)
+++..+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+|+... ..+
T Consensus 10 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 89 (198)
T TIGR01189 10 RGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELS 89 (198)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEeccCcccccCCc
Confidence 455678999999999999999999999999999999986521 0011124443311 112
Q ss_pred hH-----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 834 VL-----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 834 ~~-----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
+. ..++..++..+.......++++++++...+++. +.+|+++|||||++|+|+.....+ ..
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l-~~ 168 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALL-AG 168 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHH-HH
Confidence 21 223445566555555667788888777766665 689999999999999999877766 45
Q ss_pred HHHHHHhCCCcEEEEEeCchH
Q 001405 896 TLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~~ 916 (1083)
++..+.+ .|.++|++||++.
T Consensus 169 ~l~~~~~-~~~tii~~sH~~~ 188 (198)
T TIGR01189 169 LLRAHLA-RGGIVLLTTHQDL 188 (198)
T ss_pred HHHHHHh-CCCEEEEEEcccc
Confidence 5555555 5889999999874
No 119
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=5.7e-17 Score=186.15 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=103.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~~ 832 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++.. ..+..+|+|+... .+
T Consensus 18 ~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~ 97 (343)
T PRK11153 18 IHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR 97 (343)
T ss_pred eEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC
Confidence 568899999999999999999999999999999986531 0111234444321 11
Q ss_pred chH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++. ..++..+|..+......+.+++++++...+++. +.+|+++||||||+|||+....
T Consensus 98 tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~ 177 (343)
T PRK11153 98 TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177 (343)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 221 224455666666666677889888887777765 6899999999999999998877
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ ..++..+.++.|.++|++||+++.+.
T Consensus 178 ~l-~~~L~~l~~~~g~tiilvtH~~~~i~ 205 (343)
T PRK11153 178 SI-LELLKDINRELGLTIVLITHEMDVVK 205 (343)
T ss_pred HH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 77 45555565535899999999998754
No 120
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=3e-17 Score=179.33 Aligned_cols=144 Identities=17% Similarity=0.191 Sum_probs=98.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~---~ 831 (1083)
++...++++++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 94 (237)
T PRK11614 15 YGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSR 94 (237)
T ss_pred eCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcccCCC
Confidence 345678999999999999999999999999999999986421 1111234444321 1
Q ss_pred cchHHHH-------------------HhhC-CcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 832 LHVLDGI-------------------YTRM-GASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 832 ~~~~~~i-------------------~~~~-~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+++.+.+ +..+ +..+........+++++++...+++. +.+|+++||||||+|+|+....
T Consensus 95 ~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~ 174 (237)
T PRK11614 95 MTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQ 174 (237)
T ss_pred CcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHH
Confidence 2222222 2222 12222333445677777776666655 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHH-HHh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIA-DIK 921 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~ 921 (1083)
.+ ..++..+.+ .|.++|++||+++.. +++
T Consensus 175 ~l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~ 204 (237)
T PRK11614 175 QI-FDTIEQLRE-QGMTIFLVEQNANQALKLA 204 (237)
T ss_pred HH-HHHHHHHHH-CCCEEEEEeCcHHHHHhhC
Confidence 66 456666665 589999999998744 443
No 121
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=4.6e-17 Score=174.58 Aligned_cols=140 Identities=18% Similarity=0.219 Sum_probs=100.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---ELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~~ 833 (1083)
+++..+++|++|++.+| +++|+|||||||||||++|+++.. ..+...|+|++.. .++
T Consensus 10 ~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~t 88 (211)
T cd03264 10 YGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFT 88 (211)
T ss_pred ECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecCCCcccccCC
Confidence 34557899999999999 999999999999999999986531 0111234444321 112
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. ..++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 89 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 168 (211)
T cd03264 89 VREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIR 168 (211)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 21 223444555555555566788888877776665 78999999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+ ..+++.+.+ +.++|++||+.+...
T Consensus 169 l-~~~l~~~~~--~~tii~vsH~~~~~~ 193 (211)
T cd03264 169 F-RNLLSELGE--DRIVILSTHIVEDVE 193 (211)
T ss_pred H-HHHHHHHhC--CCEEEEEcCCHHHHH
Confidence 7 556666654 489999999998764
No 122
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.71 E-value=6.2e-17 Score=180.15 Aligned_cols=143 Identities=16% Similarity=0.131 Sum_probs=102.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc--
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA-- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~-- 830 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|....
T Consensus 17 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~ 96 (269)
T PRK11831 17 RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGALF 96 (269)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccccC
Confidence 456678999999999999999999999999999999986531 0111234444321
Q ss_pred -ccchHHH----------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 -ELHVLDG----------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 -~~~~~~~----------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.+++.+. ++..+|..+......+.+++++++...+++. +.+|+++||||||+|+|+
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 176 (269)
T PRK11831 97 TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDP 176 (269)
T ss_pred CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCH
Confidence 1122222 2344555544555567788888887777765 688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.+..|.+||++||+++...
T Consensus 177 ~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~ 208 (269)
T PRK11831 177 ITMGVLV-KLISELNSALGVTCVVVSHDVPEVL 208 (269)
T ss_pred HHHHHHH-HHHHHHHHhcCcEEEEEecCHHHHH
Confidence 8777774 4555565434899999999987653
No 123
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.71 E-value=4.7e-17 Score=178.40 Aligned_cols=142 Identities=21% Similarity=0.265 Sum_probs=99.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-H---------------------Hhhc-cccccccccc-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-I---------------------MAQV-GSFVPASSAE- 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-~---------------------laq~-g~~vp~~~~~- 831 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++. + ..+. ..|+|+....
T Consensus 10 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~ 89 (243)
T TIGR01978 10 VEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEEI 89 (243)
T ss_pred ECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeecccccc
Confidence 44567899999999999999999999999999999999862 0 0111 1244433111
Q ss_pred --cch----------------------------HHHHHhhCCcchh-HHhchh-hhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 832 --LHV----------------------------LDGIYTRMGASDS-IQQGRS-TFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 832 --~~~----------------------------~~~i~~~~~~~d~-~~~~~s-tf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
.++ +..++..++..+. ...... .+++++++...+++. +.+|+++|||
T Consensus 90 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 169 (243)
T TIGR01978 90 PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILD 169 (243)
T ss_pred CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEec
Confidence 111 1123334454422 233343 488888777766665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||+|+|+.....+. .++..+.+ .|.+||++||+.+...
T Consensus 170 EPt~~LD~~~~~~l~-~~l~~~~~-~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 170 EIDSGLDIDALKIVA-EGINRLRE-PDRSFLIITHYQRLLN 208 (243)
T ss_pred CCcccCCHHHHHHHH-HHHHHHHH-CCcEEEEEEecHHHHH
Confidence 999999998877774 55555655 5889999999998775
No 124
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.71 E-value=4.2e-17 Score=187.45 Aligned_cols=146 Identities=18% Similarity=0.155 Sum_probs=107.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhccccccccccc---cch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSAE---LHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~~---~~~ 834 (1083)
|++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|++++..- +++
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~tv 91 (353)
T PRK10851 12 FGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQHYALFRHMTV 91 (353)
T ss_pred eCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEecCcccCCCCcH
Confidence 4556789999999999999999999999999999999875311 0111234333111 111
Q ss_pred -------------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 835 -------------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 835 -------------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+..++..+++.+........+++++++...+++. +.+|+++|||||++|||+..
T Consensus 92 ~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~ 171 (353)
T PRK10851 92 FDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQV 171 (353)
T ss_pred HHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHH
Confidence 2234555666666666677888888888777776 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
...+. .++..+.++.|.++|++||+++.+. +++
T Consensus 172 r~~l~-~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 172 RKELR-RWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 88885 4555565545899999999998754 454
No 125
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.71 E-value=4.5e-17 Score=180.86 Aligned_cols=147 Identities=16% Similarity=0.141 Sum_probs=103.2
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc---c
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA---E 831 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~---~ 831 (1083)
.+++..+++|++|++.+|++++|+||||||||||||+|+++... .....|+|+... .
T Consensus 16 ~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 95 (265)
T PRK10253 16 GYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPGD 95 (265)
T ss_pred EECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCCC
Confidence 34556799999999999999999999999999999999865310 111124443311 1
Q ss_pred cchH-------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 832 LHVL-------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 832 ~~~~-------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
..+. ..++..++..+........+++++++...+++. +.+|+++|||||++|+|
T Consensus 96 ~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 96 ITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred CcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 1122 223444455544555566788888777766665 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
+.....+. .++..+.+..|.++|++||+++.. .+++
T Consensus 176 ~~~~~~l~-~~L~~l~~~~~~tiii~tH~~~~~~~~~d 212 (265)
T PRK10253 176 ISHQIDLL-ELLSELNREKGYTLAAVLHDLNQACRYAS 212 (265)
T ss_pred HHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 98888775 455556543488999999999754 4443
No 126
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.71 E-value=3.9e-17 Score=188.65 Aligned_cols=148 Identities=16% Similarity=0.115 Sum_probs=108.0
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcccccccccc---ccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~---~~~ 833 (1083)
.+++..+++|++|++.+|++++|+||||||||||||+|+++.-.. ....|+++..+ .++
T Consensus 23 ~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~lt 102 (375)
T PRK09452 23 SFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMT 102 (375)
T ss_pred EECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEecCcccCCCCC
Confidence 345567899999999999999999999999999999999754210 11123443321 112
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. +.++..++..+.+.....++++++++...+++. +.+|+++|||||++|||+.....
T Consensus 103 v~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~ 182 (375)
T PRK09452 103 VFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQ 182 (375)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHH
Confidence 22 234455666666666777888888887777775 68999999999999999988887
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+. ..+..+.++.|.++|++||+.+.+ .++++
T Consensus 183 l~-~~L~~l~~~~g~tiI~vTHd~~ea~~laDr 214 (375)
T PRK09452 183 MQ-NELKALQRKLGITFVFVTHDQEEALTMSDR 214 (375)
T ss_pred HH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 74 455555554689999999999875 45543
No 127
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.71 E-value=5e-17 Score=168.41 Aligned_cols=130 Identities=16% Similarity=0.167 Sum_probs=88.8
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc-ccccccc----------cccchH---HHHHhhCCcc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG-SFVPASS----------AELHVL---DGIYTRMGAS 845 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g-~~vp~~~----------~~~~~~---~~i~~~~~~~ 845 (1083)
.++++++|++.+|++++|+||||+|||||+|+|+++.... .| .++.... ..++++ ..++. ....
T Consensus 16 ~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~t~~ 93 (171)
T cd03228 16 PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPT-SGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-GTIR 93 (171)
T ss_pred ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCC-CCEEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-chHH
Confidence 6889999999999999999999999999999998764221 11 1111100 000000 01111 1223
Q ss_pred hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 846 DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 846 d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+++ +++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+.+ +.++|++||+++....
T Consensus 94 e~l------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~~ 160 (171)
T cd03228 94 ENI------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI-LEALRALAK--GKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHh------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHH-HHHHHHhcC--CCEEEEEecCHHHHHh
Confidence 332 66677676666654 689999999999999999887777 455555543 6899999999987653
No 128
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.70 E-value=4.1e-17 Score=175.39 Aligned_cols=142 Identities=14% Similarity=0.110 Sum_probs=100.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------hhcccccccccc---ccchH
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------AQVGSFVPASSA---ELHVL 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------aq~g~~vp~~~~---~~~~~ 835 (1083)
++++.++++++|++.+|++++|+||||||||||+|+|+++... .+...|++.... .+++.
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~t~~ 100 (214)
T PRK13543 21 RNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHLPGLKADLSTL 100 (214)
T ss_pred cCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecCcccccCCcHH
Confidence 4456789999999999999999999999999999999865310 111224443311 11222
Q ss_pred H------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHH
Q 001405 836 D------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYAT 896 (1083)
Q Consensus 836 ~------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~i 896 (1083)
+ .++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+ ..+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l-~~~ 179 (214)
T PRK13543 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLV-NRM 179 (214)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHH
Confidence 2 23344554444445556778877777666665 689999999999999999877766 556
Q ss_pred HHHHHhCCCcEEEEEeCchHHHH
Q 001405 897 LDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 897 l~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+..+.+ .|.++|++||+++...
T Consensus 180 l~~~~~-~~~tiii~sH~~~~~~ 201 (214)
T PRK13543 180 ISAHLR-GGGAALVTTHGAYAAP 201 (214)
T ss_pred HHHHHh-CCCEEEEEecChhhhh
Confidence 666655 5889999999987653
No 129
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.70 E-value=6.1e-17 Score=177.31 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=101.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccccc--c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAEL--H 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~~--~ 833 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+....+ +
T Consensus 13 ~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~t 92 (241)
T PRK14250 13 SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGT 92 (241)
T ss_pred eCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhh
Confidence 4456789999999999999999999999999999999865310 11123444431110 1
Q ss_pred h-----------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 834 V-----------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 834 ~-----------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
+ ...++..++.. +........+++++++...+++. +.+|+++|||||++|+|+.....+ .
T Consensus 93 v~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l-~ 171 (241)
T PRK14250 93 VKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII-E 171 (241)
T ss_pred HHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-H
Confidence 1 12345556664 34455566788888777666665 689999999999999999877666 4
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++..+.+..|.++|++||+.+...
T Consensus 172 ~~l~~~~~~~g~tii~~sH~~~~~~ 196 (241)
T PRK14250 172 ELIVKLKNKMNLTVIWITHNMEQAK 196 (241)
T ss_pred HHHHHHHHhCCCEEEEEeccHHHHH
Confidence 5555565434889999999998753
No 130
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=1.4e-17 Score=173.63 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=91.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc-ccccccc------------cccchH---HHHH
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG-SFVPASS------------AELHVL---DGIY 839 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g-~~vp~~~------------~~~~~~---~~i~ 839 (1083)
++++.++++++|++.+|++++|+||||||||||+|+|+++... .-| .++.... ..+.++ ..++
T Consensus 10 ~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 88 (178)
T cd03229 10 YGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEP-DSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFALF 88 (178)
T ss_pred ECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC-CceEEEECCEEccccchhHHHHhhcEEEEecCCccC
Confidence 3445688999999999999999999999999999999865321 111 1110000 000000 0111
Q ss_pred hhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 840 TRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 840 ~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
..+...+++... +++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+.++.+.++|++||+++..
T Consensus 89 ~~~t~~~~l~~~---lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l-~~~l~~~~~~~~~tiii~sH~~~~~ 164 (178)
T cd03229 89 PHLTVLENIALG---LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREV-RALLKSLQAQLGITVVLVTHDLDEA 164 (178)
T ss_pred CCCCHHHheeec---CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 112222222111 67777666655554 689999999999999999877776 4556666652378999999998876
Q ss_pred H
Q 001405 919 D 919 (1083)
Q Consensus 919 ~ 919 (1083)
.
T Consensus 165 ~ 165 (178)
T cd03229 165 A 165 (178)
T ss_pred H
Confidence 5
No 131
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=5.7e-17 Score=173.87 Aligned_cols=135 Identities=19% Similarity=0.149 Sum_probs=96.1
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccchHH------
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHVLD------ 836 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~~~------ 836 (1083)
|++|++.+|++++|+||||||||||||+|+++... .+..+|+++... ..++.+
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~ 95 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGL 95 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecccccCCCCcHHHHHhccc
Confidence 89999999999999999999999999999865311 011124443311 112222
Q ss_pred ---------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 837 ---------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 837 ---------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
.++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+
T Consensus 96 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~ 174 (211)
T cd03298 96 SPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEML-DLVLDL 174 (211)
T ss_pred ccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 23444455444445556788888887777766 6899999999999999998888774 455555
Q ss_pred HhCCCcEEEEEeCchHHHH
Q 001405 901 LEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++.++++|++||+++...
T Consensus 175 ~~~~~~tii~~sH~~~~~~ 193 (211)
T cd03298 175 HAETKMTVLMVTHQPEDAK 193 (211)
T ss_pred HHhcCCEEEEEecCHHHHH
Confidence 5435899999999998763
No 132
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=6.5e-17 Score=177.19 Aligned_cols=139 Identities=15% Similarity=0.146 Sum_probs=100.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc---ccchH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA---ELHVL 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~---~~~~~ 835 (1083)
..++++++|++.+|++++|+||||||||||||+|+++... .+...|+|.... ..++.
T Consensus 14 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 93 (242)
T cd03295 14 KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVE 93 (242)
T ss_pred ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCccccCCCcHH
Confidence 5688999999999999999999999999999999865310 111134444311 11211
Q ss_pred ---------------------HHHHhhCCcch--hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 836 ---------------------DGIYTRMGASD--SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 836 ---------------------~~i~~~~~~~d--~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
..++..++... ........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 94 e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 173 (242)
T cd03295 94 ENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQ 173 (242)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 23445566653 4555667788888887777665 68999999999999999987776
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+ ..++..+.+..|+++|++||+.+..
T Consensus 174 l-~~~L~~~~~~~g~tvii~sH~~~~~ 199 (242)
T cd03295 174 L-QEEFKRLQQELGKTIVFVTHDIDEA 199 (242)
T ss_pred H-HHHHHHHHHHcCCEEEEEecCHHHH
Confidence 6 4555555543489999999998754
No 133
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.70 E-value=3.5e-17 Score=169.64 Aligned_cols=131 Identities=18% Similarity=0.017 Sum_probs=91.0
Q ss_pred ceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccc-cccccccccchHHHHHhhCCcchhH
Q 001405 770 PVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGS-FVPASSAELHVLDGIYTRMGASDSI 848 (1083)
Q Consensus 770 P~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~-~vp~~~~~~~~~~~i~~~~~~~d~~ 848 (1083)
|-+.+.++++.+++++ |++++|++++|+||||||||||+|+|+++.... .|. .+.. ..++.. .+..
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g--~~i~~~---------~q~~ 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDG--ITPVYK---------PQYI 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECC--EEEEEE---------cccC
Confidence 5566667777888885 899999999999999999999999997653221 111 1110 001110 0000
Q ss_pred HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 849 QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 849 ~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+++++++...+++. +.+|+++|||||++|+|+.....+...+ ..+.++.+.++|++||+++...
T Consensus 71 -----~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l-~~~~~~~~~tiiivsH~~~~~~ 136 (177)
T cd03222 71 -----DLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAI-RRLSEEGKKTALVVEHDLAVLD 136 (177)
T ss_pred -----CCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHH-HHHHHcCCCEEEEEECCHHHHH
Confidence 066677666666554 6899999999999999998888775544 4444423489999999998765
No 134
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.70 E-value=6.8e-17 Score=178.15 Aligned_cols=142 Identities=17% Similarity=0.132 Sum_probs=100.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------------hhcc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------------AQVG 822 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------------aq~g 822 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+..
T Consensus 10 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i 89 (252)
T TIGR03005 10 FGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKI 89 (252)
T ss_pred eCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCe
Confidence 3455789999999999999999999999999999999865310 1112
Q ss_pred cccccccc---ccchH----------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEE
Q 001405 823 SFVPASSA---ELHVL----------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVI 876 (1083)
Q Consensus 823 ~~vp~~~~---~~~~~----------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvl 876 (1083)
.|+++... ..++. ..++..+|..+.+......+++++++...+++. +.+|+++|
T Consensus 90 ~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 169 (252)
T TIGR03005 90 GMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVML 169 (252)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 23443311 11111 223444555555555666788888777666665 68999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
||||++|+|+.....+. .++..+.+..|.++|++||+++..
T Consensus 170 lDEP~~~LD~~~~~~l~-~~l~~~~~~~~~tiiivsH~~~~~ 210 (252)
T TIGR03005 170 FDEVTSALDPELVGEVL-NVIRRLASEHDLTMLLVTHEMGFA 210 (252)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHH
Confidence 99999999998777774 455555543489999999998865
No 135
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=5.4e-17 Score=181.49 Aligned_cols=142 Identities=15% Similarity=0.161 Sum_probs=103.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc----cccch
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS----AELHV 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~----~~~~~ 834 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+++.. ...++
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv 99 (279)
T PRK13650 20 KYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATV 99 (279)
T ss_pred CeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccH
Confidence 458999999999999999999999999999999986531 111123444431 01122
Q ss_pred H---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 L---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
. ..++..+|+.+........+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l 179 (279)
T PRK13650 100 EDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLEL 179 (279)
T ss_pred HHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHH
Confidence 2 233445566655666667888888777766665 789999999999999999877777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..++..+.++.|.|||++||+++....+
T Consensus 180 -~~~l~~l~~~~g~tilivtH~~~~~~~~ 207 (279)
T PRK13650 180 -IKTIKGIRDDYQMTVISITHDLDEVALS 207 (279)
T ss_pred -HHHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 4566666553589999999999876543
No 136
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.70 E-value=6.8e-17 Score=174.40 Aligned_cols=140 Identities=16% Similarity=0.172 Sum_probs=98.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~~ 836 (1083)
..+++|++|++.+|++++|+|||||||||||++|+++... .+...|+++.... .++.+
T Consensus 17 ~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 96 (220)
T cd03245 17 IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRD 96 (220)
T ss_pred cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHH
Confidence 4689999999999999999999999999999999865310 1112345544211 12222
Q ss_pred H---------------HHhhCCcchhHHhc-----------hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 G---------------IYTRMGASDSIQQG-----------RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~---------------i~~~~~~~d~~~~~-----------~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
. ++..++..+.+... ...+++++++...+++. +.+|+++||||||+|||+...
T Consensus 97 ~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 97 NITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred HhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 2 23334443333321 24788888887777765 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+. .++..+.+ +.++|++||++++.+++
T Consensus 177 ~~l~-~~l~~~~~--~~tii~~sH~~~~~~~~ 205 (220)
T cd03245 177 ERLK-ERLRQLLG--DKTLIIITHRPSLLDLV 205 (220)
T ss_pred HHHH-HHHHHhcC--CCEEEEEeCCHHHHHhC
Confidence 7775 45555544 38999999999876543
No 137
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.70 E-value=6.8e-17 Score=179.17 Aligned_cols=145 Identities=17% Similarity=0.163 Sum_probs=102.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------------------hccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------------------QVGSFVPA 827 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------------------q~g~~vp~ 827 (1083)
+++..++++++|++.+|++++|+||||||||||||+|+++.-.. +...|+|+
T Consensus 14 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q 93 (262)
T PRK09984 14 FNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQ 93 (262)
T ss_pred eCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcc
Confidence 34567899999999999999999999999999999998764210 01134443
Q ss_pred ccc---ccchHH-----------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcE
Q 001405 828 SSA---ELHVLD-----------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSL 874 (1083)
Q Consensus 828 ~~~---~~~~~~-----------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sL 874 (1083)
... .+++.+ .++.++|..+.+......+++++++...+++. +.+|+|
T Consensus 94 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (262)
T PRK09984 94 QFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV 173 (262)
T ss_pred ccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 311 111222 23344555555555666788888777766665 689999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHh
Q 001405 875 VIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIK 921 (1083)
Q Consensus 875 vllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~ 921 (1083)
||||||++|+|+.....+. .++..+.+..|.++|++||+++++ .++
T Consensus 174 lllDEPt~~LD~~~~~~l~-~~l~~~~~~~g~tvii~tH~~~~~~~~~ 220 (262)
T PRK09984 174 ILADEPIASLDPESARIVM-DTLRDINQNDGITVVVTLHQVDYALRYC 220 (262)
T ss_pred EEecCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999998887774 555556543589999999999864 444
No 138
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.70 E-value=8.4e-17 Score=174.62 Aligned_cols=139 Identities=16% Similarity=0.137 Sum_probs=97.8
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhccccccccc--c---c
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASS--A---E 831 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~--~---~ 831 (1083)
.+++|++|++.+|++++|+|||||||||||++|+++.. ..+...|+|+.. . .
T Consensus 19 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 19 KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 68899999999999999999999999999999986421 001122344332 0 1
Q ss_pred cchHH-----------------------HHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 832 LHVLD-----------------------GIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 832 ~~~~~-----------------------~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.++.+ .++..++.. .........+++++++...+++. +.+|+++||||||+|+|+
T Consensus 99 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 178 (228)
T cd03257 99 MTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178 (228)
T ss_pred CCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCH
Confidence 12212 223344443 23444556788888887777665 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.++.|.+||++||+.+.+.
T Consensus 179 ~~~~~l~-~~l~~~~~~~~~tii~~sH~~~~~~ 210 (228)
T cd03257 179 SVQAQIL-DLLKKLQEELGLTLLFITHDLGVVA 210 (228)
T ss_pred HHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 8777774 4555555424889999999998765
No 139
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=4.8e-17 Score=182.03 Aligned_cols=140 Identities=17% Similarity=0.188 Sum_probs=103.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc--c--cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA--E--LH 833 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~--~--~~ 833 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++.. ..+..+|+|+... . ..
T Consensus 23 ~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~ 102 (280)
T PRK13633 23 KLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATI 102 (280)
T ss_pred cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcccc
Confidence 469999999999999999999999999999999986521 1112234444310 0 01
Q ss_pred h---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 V---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+ +..++..+|+.+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 103 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 182 (280)
T PRK13633 103 VEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRRE 182 (280)
T ss_pred HHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 1 1234455666666666677888888887777765 68999999999999999988888
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+. .++..+.++.|++||++||+++.+.
T Consensus 183 l~-~~l~~l~~~~g~tillvtH~~~~~~ 209 (280)
T PRK13633 183 VV-NTIKELNKKYGITIILITHYMEEAV 209 (280)
T ss_pred HH-HHHHHHHHhcCCEEEEEecChHHHh
Confidence 74 5666665435899999999998765
No 140
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=8.5e-17 Score=176.28 Aligned_cols=142 Identities=17% Similarity=0.156 Sum_probs=101.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------------hhccccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------------AQVGSFVPASS 829 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------------aq~g~~vp~~~ 829 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+..
T Consensus 12 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 91 (242)
T PRK11124 12 YGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQY 91 (242)
T ss_pred ECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCc
Confidence 3455789999999999999999999999999999999865310 01123444432
Q ss_pred c---ccchHHH----------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 830 A---ELHVLDG----------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 830 ~---~~~~~~~----------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
. .+++.+. ++..+|....+......+++++++...+++. +.+|+++|||||++|
T Consensus 92 ~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~ 171 (242)
T PRK11124 92 NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 1 1122222 2334555544555566788888887766665 689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+.....+ ..+++.+.+ .|.++|++||+.+...
T Consensus 172 LD~~~~~~l-~~~l~~~~~-~~~tii~~sh~~~~~~ 205 (242)
T PRK11124 172 LDPEITAQI-VSIIRELAE-TGITQVIVTHEVEVAR 205 (242)
T ss_pred CCHHHHHHH-HHHHHHHHH-cCCEEEEEeCCHHHHH
Confidence 999877766 456666655 5899999999998763
No 141
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.6e-17 Score=180.65 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=103.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc----cccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS----AELH 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~----~~~~ 833 (1083)
...+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+|+.. ...+
T Consensus 16 ~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~t 95 (277)
T PRK13652 16 SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPT 95 (277)
T ss_pred CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCccccccccc
Confidence 3468999999999999999999999999999999986531 111123444431 1112
Q ss_pred hH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+. +.++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~ 175 (277)
T PRK13652 96 VEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKE 175 (277)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 22 223444555555555666788888887776665 68999999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
+ ..++..+.++.|.++|++||+++.. ++++
T Consensus 176 l-~~~l~~l~~~~g~tvli~tH~~~~~~~~~d 206 (277)
T PRK13652 176 L-IDFLNDLPETYGMTVIFSTHQLDLVPEMAD 206 (277)
T ss_pred H-HHHHHHHHHhcCCEEEEEecCHHHHHHhCC
Confidence 7 4555556553489999999999876 3443
No 142
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.70 E-value=4.2e-17 Score=176.49 Aligned_cols=144 Identities=19% Similarity=0.161 Sum_probs=102.3
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------hhcc-ccccccc----cc---
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------AQVG-SFVPASS----AE--- 831 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------aq~g-~~vp~~~----~~--- 831 (1083)
..|++..+++|++|++.+|++++|+||||||||||+|+|+++... .+.+ .+.|... ..
T Consensus 30 ~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~tv~enl~~~~ 109 (224)
T cd03220 30 GEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLGGGFNPELTGRENIYLNG 109 (224)
T ss_pred hhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhcccccCCCCCcHHHHHHHHH
Confidence 356778899999999999999999999999999999999875311 0111 1111100 00
Q ss_pred ----cc------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 832 ----LH------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 832 ----~~------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
.. ....++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+.. ++..+
T Consensus 110 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~-~l~~~ 188 (224)
T cd03220 110 RLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQR-RLREL 188 (224)
T ss_pred HHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 00 01223444565555556667888888887766665 68999999999999999988877754 55555
Q ss_pred HhCCCcEEEEEeCchHHHH
Q 001405 901 LEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ .+.++|++||+.+.+.
T Consensus 189 ~~-~~~tiii~sH~~~~~~ 206 (224)
T cd03220 189 LK-QGKTVILVSHDPSSIK 206 (224)
T ss_pred Hh-CCCEEEEEeCCHHHHH
Confidence 55 4789999999987654
No 143
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=7.3e-17 Score=173.46 Aligned_cols=144 Identities=18% Similarity=0.176 Sum_probs=102.4
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccc
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPA 827 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~ 827 (1083)
|.+.|++..+ |++|++.+ ++++|+|||||||||||++|+++... .+...|+|.
T Consensus 6 l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q 82 (214)
T cd03297 6 IEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQ 82 (214)
T ss_pred eeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEec
Confidence 4555666655 99999999 99999999999999999999865310 111224443
Q ss_pred ccc---ccchH-------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 828 SSA---ELHVL-------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 828 ~~~---~~~~~-------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
... ..++. ..++.++|..+........+++++++...+++. +.+|+++|||||++|+
T Consensus 83 ~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~L 162 (214)
T cd03297 83 QYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSAL 162 (214)
T ss_pred CCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 311 11111 224455666555566667888888887776665 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|+.....+. .++..+.++.|+++|++||+.+...
T Consensus 163 D~~~~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~ 196 (214)
T cd03297 163 DRALRLQLL-PELKQIKKNLNIPVIFVTHDLSEAE 196 (214)
T ss_pred CHHHHHHHH-HHHHHHHHHcCcEEEEEecCHHHHH
Confidence 998877774 5555565534889999999998653
No 144
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.70 E-value=6.3e-17 Score=179.71 Aligned_cols=146 Identities=14% Similarity=0.118 Sum_probs=101.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASS---AEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~---~~~ 832 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++.-. .+...|+|+.. ..+
T Consensus 21 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (265)
T PRK10575 21 VPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM 100 (265)
T ss_pred ECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCCCc
Confidence 3456789999999999999999999999999999999865310 11122444331 111
Q ss_pred chHH-------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 833 HVLD-------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 833 ~~~~-------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
++.+ .++.+++..+.+......+++++++...+++. +.+|+++|||||++|+|+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~ 180 (265)
T PRK10575 101 TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI 180 (265)
T ss_pred cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 2222 23444455444444556788888777666655 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
.....+ ..++..+.+..|+++|++||+++.. .+++
T Consensus 181 ~~~~~~-~~~l~~l~~~~~~tiii~sH~~~~i~~~~d 216 (265)
T PRK10575 181 AHQVDV-LALVHRLSQERGLTVIAVLHDINMAARYCD 216 (265)
T ss_pred HHHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 877777 4555556543489999999998765 3443
No 145
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.70 E-value=4.4e-17 Score=172.38 Aligned_cols=129 Identities=16% Similarity=0.191 Sum_probs=91.2
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--HHhhc-----------------cccccccccccchHHHHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--IMAQV-----------------GSFVPASSAELHVLDGIY 839 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--~laq~-----------------g~~vp~~~~~~~~~~~i~ 839 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++. ..... ..|+|... .++
T Consensus 22 ~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~-------~~~ 94 (194)
T cd03213 22 KQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRKIIGYVPQDD-------ILH 94 (194)
T ss_pred ccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhheEEEccCcc-------cCC
Confidence 57899999999999999999999999999999998765 21110 11222221 112
Q ss_pred hhCCcchhHHhchh--hhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 840 TRMGASDSIQQGRS--TFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 840 ~~~~~~d~~~~~~s--tf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
..+...+++..... .+++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+.+ .+.++|++||+++
T Consensus 95 ~~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiii~sh~~~ 172 (194)
T cd03213 95 PTLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQV-MSLLRRLAD-TGRTIICSIHQPS 172 (194)
T ss_pred CCCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHH-HHHHHHHHh-CCCEEEEEecCch
Confidence 22233333332211 577777776666555 689999999999999999877777 455666665 5899999999985
No 146
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.70 E-value=2.6e-17 Score=173.80 Aligned_cols=130 Identities=15% Similarity=0.145 Sum_probs=92.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-hhcc-----------------ccccccccccchHHHHHh
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-AQVG-----------------SFVPASSAELHVLDGIYT 840 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-aq~g-----------------~~vp~~~~~~~~~~~i~~ 840 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++... ...| .|+++.. .++.
T Consensus 20 ~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~-------~~~~ 92 (192)
T cd03232 20 RQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQD-------VHSP 92 (192)
T ss_pred eEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceEEecccC-------cccc
Confidence 5688999999999999999999999999999999875311 1112 1222211 1222
Q ss_pred hCCcchhHHhch--hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 841 RMGASDSIQQGR--STFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 841 ~~~~~d~~~~~~--stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
.+...+++.... ..+++++++...+++. +.+|+++|+|||++|+|+.....+ ..++..+.+ .|+++|++||+++.
T Consensus 93 ~~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l-~~~l~~~~~-~~~tiiivtH~~~~ 170 (192)
T cd03232 93 NLTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNI-VRFLKKLAD-SGQAILCTIHQPSA 170 (192)
T ss_pred CCcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHH-HHHHHHHHH-cCCEEEEEEcCChH
Confidence 233344443221 1677777776666655 689999999999999999877777 456666665 58999999999873
No 147
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.70 E-value=9.3e-17 Score=173.40 Aligned_cols=143 Identities=20% Similarity=0.270 Sum_probs=102.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc---cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---~~ 832 (1083)
..+++|++|++.+|++++|+||||+|||||+++|+++.. ..+...|+|.... ..
T Consensus 18 ~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (220)
T TIGR02982 18 KQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL 97 (220)
T ss_pred eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC
Confidence 568899999999999999999999999999999986420 0111233443311 01
Q ss_pred ch----------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 833 HV----------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 833 ~~----------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++ +..++.++|..+........++.++++...+++. +.+|+++|||||++|+|+...
T Consensus 98 t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~ 177 (220)
T TIGR02982 98 TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSG 177 (220)
T ss_pred CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHH
Confidence 11 2234455666555666667788888887766665 689999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+ ..+++.+.+..+.++|++||++++..+++
T Consensus 178 ~~l-~~~l~~~~~~~~~tii~~sh~~~~~~~~d 209 (220)
T TIGR02982 178 RDV-VELMQKLAREQGCTILIVTHDNRILDVAD 209 (220)
T ss_pred HHH-HHHHHHHHHHcCCEEEEEeCCHHHHhhCC
Confidence 777 45555555435899999999998655443
No 148
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.69 E-value=9.2e-17 Score=176.02 Aligned_cols=141 Identities=17% Similarity=0.119 Sum_probs=100.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~---~ 831 (1083)
+++..+++|++|++.+|++++|+||||+|||||||+|+++.. ..+.-.|+|.... .
T Consensus 12 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (242)
T TIGR03411 12 FDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFEN 91 (242)
T ss_pred cCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccccCCC
Confidence 345578999999999999999999999999999999986531 0011123333211 1
Q ss_pred cchH-----------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 832 LHVL-----------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 832 ~~~~-----------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
+++. ..++.++|..+......+.+++++++...+++. +.+|+++|||||+
T Consensus 92 ~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 92 LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 1111 223445555555555666788888777766665 6889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ +.++..+.+ +.++|++||+++.+.
T Consensus 172 ~~LD~~~~~~l-~~~l~~~~~--~~tii~~sH~~~~~~ 206 (242)
T TIGR03411 172 AGMTDEETEKT-AELLKSLAG--KHSVVVVEHDMEFVR 206 (242)
T ss_pred cCCCHHHHHHH-HHHHHHHhc--CCEEEEEECCHHHHH
Confidence 99999887777 455555554 579999999998764
No 149
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=6.8e-17 Score=180.03 Aligned_cols=142 Identities=15% Similarity=0.119 Sum_probs=101.9
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc----ccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA----ELH 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~----~~~ 833 (1083)
++.+++|++|++.+|++++|+||||||||||||+|+++.. +.+...|+|+... ..+
T Consensus 21 ~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~t 100 (271)
T PRK13632 21 ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGAT 100 (271)
T ss_pred CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhcCccc
Confidence 4578999999999999999999999999999999987631 1111234554321 112
Q ss_pred hHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 VLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
+.+ .++.++|..+.+......+++++++...+++. +.+|+++|||||++|+|+.....
T Consensus 101 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~ 180 (271)
T PRK13632 101 VEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKRE 180 (271)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 222 23344555555555667788888887776665 68899999999999999987777
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+. .++..+.+..+.++|++||+.+....
T Consensus 181 l~-~~l~~~~~~~~~tiii~sH~~~~~~~ 208 (271)
T PRK13632 181 IK-KIMVDLRKTRKKTLISITHDMDEAIL 208 (271)
T ss_pred HH-HHHHHHHHhcCcEEEEEEechhHHhh
Confidence 74 55555554235899999999987653
No 150
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.69 E-value=2.8e-17 Score=169.41 Aligned_cols=130 Identities=16% Similarity=0.098 Sum_probs=91.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh---------ccccccccccccchHHHHHhhCCcchhHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ---------VGSFVPASSAELHVLDGIYTRMGASDSIQ 849 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq---------~g~~vp~~~~~~~~~~~i~~~~~~~d~~~ 849 (1083)
+.+++|++|++.+|++++|+||||||||||+|+|+++..... ...|+|++... + .....+++.
T Consensus 14 ~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~-------~-~~tv~~nl~ 85 (166)
T cd03223 14 RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYL-------P-LGTLREQLI 85 (166)
T ss_pred CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCcc-------c-cccHHHHhh
Confidence 468899999999999999999999999999999987642211 11244443211 1 122333333
Q ss_pred h-chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 850 Q-GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 850 ~-~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
. ....+++++++...+++. +.+|+++|||||++|+|+.....+.. ++.. .+.++|++||+.++..++
T Consensus 86 ~~~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~-~l~~----~~~tiiivsh~~~~~~~~ 154 (166)
T cd03223 86 YPWDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQ-LLKE----LGITVISVGHRPSLWKFH 154 (166)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHH-HHHH----hCCEEEEEeCChhHHhhC
Confidence 2 346677777776666655 68999999999999999987766643 3332 258999999998765443
No 151
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=6.5e-17 Score=187.15 Aligned_cols=147 Identities=14% Similarity=0.109 Sum_probs=106.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hcccccccccc---ccch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~---~~~~ 834 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.... +...|++++.+ .+++
T Consensus 29 ~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~ltv 108 (377)
T PRK11607 29 FDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTV 108 (377)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeCCCccCCCCCH
Confidence 44567899999999999999999999999999999999764211 01124443321 1222
Q ss_pred HH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 LD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
.+ .++..++..+........+++++++...+++. +.+|+++|||||++|||+.....+
T Consensus 109 ~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l 188 (377)
T PRK11607 109 EQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRM 188 (377)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH
Confidence 22 23444555555555566788888887777766 689999999999999999888888
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
...+.+.+.+ .|.++|++||+.+.+ .++++
T Consensus 189 ~~~l~~l~~~-~g~tii~vTHd~~ea~~laDr 219 (377)
T PRK11607 189 QLEVVDILER-VGVTCVMVTHDQEEAMTMAGR 219 (377)
T ss_pred HHHHHHHHHh-cCCEEEEEcCCHHHHHHhCCE
Confidence 6555554443 689999999999875 45554
No 152
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.69 E-value=8.6e-17 Score=177.86 Aligned_cols=141 Identities=16% Similarity=0.152 Sum_probs=101.4
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------------hhccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------------AQVGS 823 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------------aq~g~ 823 (1083)
+++.+++|++|++.+|++++|+||||+|||||||+|+++... .+.-.
T Consensus 16 ~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (257)
T PRK10619 16 GEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLT 95 (257)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceE
Confidence 456789999999999999999999999999999999865310 01113
Q ss_pred ccccccc---ccchHH----------------------HHHhhCCcchhH-HhchhhhHHHHHHHHHHHHh-CCCCcEEE
Q 001405 824 FVPASSA---ELHVLD----------------------GIYTRMGASDSI-QQGRSTFLEELNEASYILRN-CTAQSLVI 876 (1083)
Q Consensus 824 ~vp~~~~---~~~~~~----------------------~i~~~~~~~d~~-~~~~stf~~e~~~~~~il~~-~~~~sLvl 876 (1083)
|+|+... .+.+.+ .++.++|..+.. ......+++++++...+++. +.+|+++|
T Consensus 96 ~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 175 (257)
T PRK10619 96 MVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLL 175 (257)
T ss_pred EEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 4443311 112222 234445554433 44566788888887777665 68999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||||++|+|+.....+. .++..+.+ .|+++|++||+.+...
T Consensus 176 lDEPt~~LD~~~~~~l~-~~l~~l~~-~g~tiiivsH~~~~~~ 216 (257)
T PRK10619 176 FDEPTSALDPELVGEVL-RIMQQLAE-EGKTMVVVTHEMGFAR 216 (257)
T ss_pred EeCCcccCCHHHHHHHH-HHHHHHHh-cCCEEEEEeCCHHHHH
Confidence 99999999998877774 55566665 5899999999998765
No 153
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.8e-17 Score=180.13 Aligned_cols=139 Identities=16% Similarity=0.114 Sum_probs=101.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH------------------------Hhhccccccccc----c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI------------------------MAQVGSFVPASS----A 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~------------------------laq~g~~vp~~~----~ 830 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|... .
T Consensus 20 ~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~ 99 (287)
T PRK13641 20 KKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLF 99 (287)
T ss_pred ccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhhc
Confidence 468999999999999999999999999999999986521 011123454431 1
Q ss_pred ccchHH---------------------HHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVLD---------------------GIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~~---------------------~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
..++.+ .++..+|.. +........+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~ 179 (287)
T PRK13641 100 ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179 (287)
T ss_pred cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 112222 234445554 34455667888888887777766 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+ ..++..+.+ .|.+||++||+++.+.
T Consensus 180 ~~~~l-~~~l~~l~~-~g~tvlivsH~~~~~~ 209 (287)
T PRK13641 180 GRKEM-MQLFKDYQK-AGHTVILVTHNMDDVA 209 (287)
T ss_pred HHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 77777 556666665 5899999999998764
No 154
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.69 E-value=9.4e-17 Score=169.40 Aligned_cols=143 Identities=16% Similarity=0.124 Sum_probs=100.1
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh----ccccccccc-----c--------------------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ----VGSFVPASS-----A-------------------- 830 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq----~g~~vp~~~-----~-------------------- 830 (1083)
....||||++++|++++++||||+||||+||++.++..... +++++|.+. .
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 47789999999999999999999999999999987653321 233344321 0
Q ss_pred ccchH---------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 831 ELHVL---------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 831 ~~~~~---------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
.+.+. +.+-..++....+.....+++.+.+..+.++.. +++|.+++|||||-|||.....+|..
T Consensus 118 s~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~ 197 (325)
T COG4586 118 SLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIRE 197 (325)
T ss_pred hHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHH
Confidence 01111 112233455555666666666655555555544 68999999999999999988888855
Q ss_pred HHHHHHHhCCCcEEEEEeCch-HHHHHhhh
Q 001405 895 ATLDYLLEHKKCMVLFVTHYP-KIADIKTK 923 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~-~l~~l~~~ 923 (1083)
.+-+ ..++.++||+.+||++ +++.++++
T Consensus 198 Flke-~n~~~~aTVllTTH~~~di~~lc~r 226 (325)
T COG4586 198 FLKE-YNEERQATVLLTTHIFDDIATLCDR 226 (325)
T ss_pred HHHH-HHHhhCceEEEEecchhhHHHhhhh
Confidence 4444 4555899999999997 66677654
No 155
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.69 E-value=9.4e-17 Score=167.20 Aligned_cols=150 Identities=19% Similarity=0.222 Sum_probs=109.4
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcc-ccccccc-
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVG-SFVPASS- 829 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g-~~vp~~~- 829 (1083)
+...||...|+.+|+|++++|+|++|+||||+|||||||+|+++.- .+..| +|||...
T Consensus 9 l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~ 88 (237)
T COG0410 9 LSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR 88 (237)
T ss_pred EeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc
Confidence 3455788899999999999999999999999999999999986642 22233 4666542
Q ss_pred --cccchH--------------------HHHHhhCC-cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 830 --AELHVL--------------------DGIYTRMG-ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 830 --~~~~~~--------------------~~i~~~~~-~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
..+++. +.+|+.|. ..+.......+++++.+|+..|.++ +.+|.|++||||+.||.
T Consensus 89 iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLa 168 (237)
T COG0410 89 IFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLA 168 (237)
T ss_pred chhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcC
Confidence 222222 22333332 2334444456778877777777766 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
|.-...|. .++..|.++.|.+||+|-++...+- ++|
T Consensus 169 P~iv~~I~-~~i~~l~~~~g~tIlLVEQn~~~Al~iaD 205 (237)
T COG0410 169 PKIVEEIF-EAIKELRKEGGMTILLVEQNARFALEIAD 205 (237)
T ss_pred HHHHHHHH-HHHHHHHHcCCcEEEEEeccHHHHHHhhC
Confidence 99888885 4566677646889999999988774 443
No 156
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.1e-17 Score=177.45 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=100.6
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc---c
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA---E 831 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~---~ 831 (1083)
.++++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+... .
T Consensus 11 ~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~ 90 (255)
T PRK11231 11 GYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLTPEG 90 (255)
T ss_pred EECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCCCCC
Confidence 3456678999999999999999999999999999999986521 0111234444321 1
Q ss_pred cchHHH-------------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 832 LHVLDG-------------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 832 ~~~~~~-------------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
+++.+. ++..+|...........+++++++...+++. +.+|+++|||||++|+|
T Consensus 91 ~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 91 ITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred ccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 122222 2333444444444556678888777666665 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.....+. .++..+.+ .|.++|++||+++...
T Consensus 171 ~~~~~~l~-~~l~~l~~-~~~tiii~tH~~~~~~ 202 (255)
T PRK11231 171 INHQVELM-RLMRELNT-QGKTVVTVLHDLNQAS 202 (255)
T ss_pred HHHHHHHH-HHHHHHHH-CCCEEEEEECCHHHHH
Confidence 98777775 45555655 5889999999988653
No 157
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=171.93 Aligned_cols=142 Identities=15% Similarity=0.177 Sum_probs=112.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH------------------------HHhhccccccccccc---
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG------------------------IMAQVGSFVPASSAE--- 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~------------------------~laq~g~~vp~~~~~--- 831 (1083)
..+++||||++++|+|++|+|.+|+|||||+|+|.++. .-.++| ++.+...-
T Consensus 19 ~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IG-MIFQhFnLLss 97 (339)
T COG1135 19 VTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIG-MIFQHFNLLSS 97 (339)
T ss_pred eeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhcc-EEecccccccc
Confidence 35788999999999999999999999999999996432 112233 22222100
Q ss_pred cc---------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LH---------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~---------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.+ -+..++..+|..|......+.++++.+++..|+++ +++|+++|.||+|+.|||...
T Consensus 98 rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT 177 (339)
T COG1135 98 RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177 (339)
T ss_pred chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHH
Confidence 11 13356778899999999999999999998888887 799999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
..|. .++..+.++.|.||+++||.++... +|+
T Consensus 178 ~sIL-~LL~~In~~lglTIvlITHEm~Vvk~ic~ 210 (339)
T COG1135 178 QSIL-ELLKDINRELGLTIVLITHEMEVVKRICD 210 (339)
T ss_pred HHHH-HHHHHHHHHcCCEEEEEechHHHHHHHhh
Confidence 9984 6777787778999999999999875 444
No 158
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=8.4e-17 Score=180.22 Aligned_cols=142 Identities=17% Similarity=0.138 Sum_probs=102.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-----------------------ccccccccc----cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-----------------------VGSFVPASS----AE 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-----------------------~g~~vp~~~----~~ 831 (1083)
..++++++|++.+|++++|+||||||||||+|+|+++....+ ...|+|+.. ..
T Consensus 20 ~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 99 (282)
T PRK13640 20 KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVG 99 (282)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhhcc
Confidence 468999999999999999999999999999999987642211 112444331 01
Q ss_pred cchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.++.+ .++..+|..+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 100 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~ 179 (282)
T PRK13640 100 ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGK 179 (282)
T ss_pred CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 12222 23444555555555566788888777766665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+. .++..+.++.|.+||++||+++....+
T Consensus 180 ~~l~-~~l~~l~~~~g~tvli~tH~~~~~~~~ 210 (282)
T PRK13640 180 EQIL-KLIRKLKKKNNLTVISITHDIDEANMA 210 (282)
T ss_pred HHHH-HHHHHHHHhcCCEEEEEecCHHHHHhC
Confidence 7775 455556543589999999999876543
No 159
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.69 E-value=8.5e-17 Score=177.82 Aligned_cols=145 Identities=19% Similarity=0.143 Sum_probs=102.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc---cc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA---EL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~---~~ 832 (1083)
+++..+++|++|++.+|++++|+||||+|||||||+|+++.- ..+...|+|+... ..
T Consensus 11 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 90 (256)
T TIGR03873 11 AGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL 90 (256)
T ss_pred ECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCCCC
Confidence 445678999999999999999999999999999999986521 0111234444321 11
Q ss_pred chHHH-------------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 833 HVLDG-------------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 833 ~~~~~-------------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
++.+. ++..++..+........+++++++...+++. +.+|+++|||||++|+|+
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 170 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 22222 2334444444444556677788777666665 688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
.....+ ..++..+.+ .|.++|++||+++.. .+++
T Consensus 171 ~~~~~l-~~~l~~~~~-~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 171 RAQLET-LALVRELAA-TGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred HHHHHH-HHHHHHHHh-cCCEEEEEeCCHHHHHHhCC
Confidence 877777 455666665 588999999999876 3443
No 160
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.2e-16 Score=179.08 Aligned_cols=141 Identities=15% Similarity=0.113 Sum_probs=102.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccccccc----cc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASS----AE 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~----~~ 831 (1083)
+..+++|++|++.+|++++|+||||||||||+|+|+++.. ......|+|+.. ..
T Consensus 18 ~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~ 97 (283)
T PRK13636 18 GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFS 97 (283)
T ss_pred CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhhcc
Confidence 3568999999999999999999999999999999986531 111123555442 11
Q ss_pred cchHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.++.+ .++..+|+.+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 98 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~ 177 (283)
T PRK13636 98 ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGV 177 (283)
T ss_pred ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHH
Confidence 12222 23444555555555667788888887777776 689999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+. .++..+.+..|.+||++||+++.+.
T Consensus 178 ~~l~-~~l~~l~~~~g~tillvsH~~~~~~ 206 (283)
T PRK13636 178 SEIM-KLLVEMQKELGLTIIIATHDIDIVP 206 (283)
T ss_pred HHHH-HHHHHHHHhCCCEEEEEecCHHHHH
Confidence 7774 5555565534899999999998764
No 161
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.69 E-value=1.1e-16 Score=167.15 Aligned_cols=126 Identities=15% Similarity=0.129 Sum_probs=90.1
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc--------------------ccccccccccchHHHHH
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG--------------------SFVPASSAELHVLDGIY 839 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g--------------------~~vp~~~~~~~~~~~i~ 839 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++... ..| .|+|+... ++
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~-------~~ 87 (178)
T cd03247 16 QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLDGVPVSDLEKALSSLISVLNQRPY-------LF 87 (178)
T ss_pred cceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEECCEEHHHHHHHHHhhEEEEccCCe-------ee
Confidence 688899999999999999999999999999999876321 111 12222110 11
Q ss_pred hhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 840 TRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 840 ~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.....+++ ...+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+. .+.++|++||+.++.
T Consensus 88 -~~tv~~~i---~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~-~~l~~~~--~~~tii~~sh~~~~~ 160 (178)
T cd03247 88 -DTTLRNNL---GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLL-SLIFEVL--KDKTLIWITHHLTGI 160 (178)
T ss_pred -cccHHHhh---cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH-HHHHHHc--CCCEEEEEecCHHHH
Confidence 11223333 45677777776666654 7899999999999999998777664 4555553 478999999999876
Q ss_pred HH
Q 001405 919 DI 920 (1083)
Q Consensus 919 ~l 920 (1083)
..
T Consensus 161 ~~ 162 (178)
T cd03247 161 EH 162 (178)
T ss_pred Hh
Confidence 53
No 162
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.69 E-value=1.1e-16 Score=174.91 Aligned_cols=146 Identities=17% Similarity=0.144 Sum_probs=103.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhccccccccccc---cch
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSAE---LHV 834 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~~---~~~ 834 (1083)
++++.+++|++|++.+|++++|+||||||||||+++|+++... .+...|+|+.... .++
T Consensus 10 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 89 (237)
T TIGR00968 10 FGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTV 89 (237)
T ss_pred ECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecChhhccCCcH
Confidence 3456799999999999999999999999999999999865310 0112344433111 111
Q ss_pred ---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 ---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
++.++.+++..+........+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 90 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~ 169 (237)
T TIGR00968 90 RDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKEL 169 (237)
T ss_pred HHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 1234555666555555566788888777666665 689999999999999999877776
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
..++..+.+..++++|++||+++.+ .+++
T Consensus 170 -~~~l~~~~~~~~~tvli~sH~~~~~~~~~d 199 (237)
T TIGR00968 170 -RSWLRKLHDEVHVTTVFVTHDQEEAMEVAD 199 (237)
T ss_pred -HHHHHHHHHhcCCEEEEEeCCHHHHHhhcC
Confidence 4555556552489999999999864 3443
No 163
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.2e-16 Score=167.49 Aligned_cols=143 Identities=20% Similarity=0.207 Sum_probs=104.9
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc-----c----------------cccccc-----ccccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV-----G----------------SFVPAS-----SAELH 833 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~-----g----------------~~vp~~-----~~~~~ 833 (1083)
.++|+|||++.+|++++|+|++|||||||.|+|+++.-..+. | .+|+++ +...+
T Consensus 21 ~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~t 100 (252)
T COG1124 21 HALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRT 100 (252)
T ss_pred hhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccCcchh
Confidence 499999999999999999999999999999999876422110 1 112221 01111
Q ss_pred h-------------------HHHHHhhCCcchhH-HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 834 V-------------------LDGIYTRMGASDSI-QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 834 ~-------------------~~~i~~~~~~~d~~-~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
+ ...++..+|..... ......|+++.++...|+++ +.+|+++|+|||+++||+.....|
T Consensus 101 v~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~I 180 (252)
T COG1124 101 VGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQI 180 (252)
T ss_pred HHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHH
Confidence 1 23455666665443 34456788887777777766 689999999999999999888777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+.++..+.++.+.+.||+|||..++. +|++
T Consensus 181 -lnlL~~l~~~~~lt~l~IsHdl~~v~~~cdR 211 (252)
T COG1124 181 -LNLLLELKKERGLTYLFISHDLALVEHMCDR 211 (252)
T ss_pred -HHHHHHHHHhcCceEEEEeCcHHHHHHHhhh
Confidence 66777777778999999999998876 4544
No 164
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.1e-16 Score=180.66 Aligned_cols=141 Identities=13% Similarity=0.119 Sum_probs=103.1
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------------------------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------------------------- 818 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------------------------- 818 (1083)
.+++|++|++.+|++++|+||||||||||+|+|+++...
T Consensus 21 ~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (305)
T PRK13651 21 KALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKI 100 (305)
T ss_pred cceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccchH
Confidence 589999999999999999999999999999999865310
Q ss_pred ---hhccccccccc----cccchH---------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-
Q 001405 819 ---AQVGSFVPASS----AELHVL---------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN- 868 (1083)
Q Consensus 819 ---aq~g~~vp~~~----~~~~~~---------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~- 868 (1083)
.+.-.|+|+.. ...++. ..++..+|.. +........+++++++...+++.
T Consensus 101 ~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL 180 (305)
T PRK13651 101 KEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGIL 180 (305)
T ss_pred HHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 11113455431 111111 2345556664 45666677888888887777766
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
+.+|+++||||||+|+|+.....+ ..++..+.+ .|.+||++||+++.+ .+++
T Consensus 181 ~~~P~lLlLDEPt~~LD~~~~~~l-~~~l~~l~~-~g~tiiivtHd~~~~~~~ad 233 (305)
T PRK13651 181 AMEPDFLVFDEPTAGLDPQGVKEI-LEIFDNLNK-QGKTIILVTHDLDNVLEWTK 233 (305)
T ss_pred HhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHHHH-CCCEEEEEeeCHHHHHHhCC
Confidence 689999999999999999776666 566666765 689999999999865 4443
No 165
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.69 E-value=1.3e-16 Score=171.39 Aligned_cols=149 Identities=15% Similarity=0.157 Sum_probs=100.6
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccc-----------ccccccccchH---HHHH
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSF-----------VPASSAELHVL---DGIY 839 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~-----------vp~~~~~~~~~---~~i~ 839 (1083)
+.++...+++||++++..|+.++|+|||||||||+||+|+++.-....-.+ ++.....++++ ..+|
T Consensus 10 ~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF 89 (345)
T COG1118 10 KRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALF 89 (345)
T ss_pred hhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhc
Confidence 345667788899999999999999999999999999999977532111100 11111122211 1234
Q ss_pred hhCCcchhHHhch---------------------------------hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 840 TRMGASDSIQQGR---------------------------------STFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 840 ~~~~~~d~~~~~~---------------------------------stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.+|.+.||+..|. ..++++.+++..++++ +.+|+++|||||+++||
T Consensus 90 ~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALD 169 (345)
T COG1118 90 PHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALD 169 (345)
T ss_pred ccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhh
Confidence 4444444444433 3445566665555554 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
..-...+-.. +..+.++.|++++|+|||.+.+ +++++
T Consensus 170 a~vr~~lr~w-Lr~~~~~~~~ttvfVTHD~eea~~ladr 207 (345)
T COG1118 170 AKVRKELRRW-LRKLHDRLGVTTVFVTHDQEEALELADR 207 (345)
T ss_pred HHHHHHHHHH-HHHHHHhhCceEEEEeCCHHHHHhhcce
Confidence 9988888544 4445555799999999999776 45544
No 166
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=9.4e-17 Score=178.71 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=100.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc----ccch
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA----ELHV 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~----~~~~ 834 (1083)
.++++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+... ...+
T Consensus 22 ~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~v 101 (269)
T PRK13648 22 SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIV 101 (269)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcccccH
Confidence 3588999999999999999999999999999999865310 111234443321 0011
Q ss_pred ---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 835 ---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 835 ---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
+..++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l 181 (269)
T PRK13648 102 KYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNL 181 (269)
T ss_pred HHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 1223445555555555666788888877766665 689999999999999999888877
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.. ++..+.+..|.++|++||+.+.+.
T Consensus 182 ~~-~L~~~~~~~~~tiiivtH~~~~~~ 207 (269)
T PRK13648 182 LD-LVRKVKSEHNITIISITHDLSEAM 207 (269)
T ss_pred HH-HHHHHHHhcCCEEEEEecCchHHh
Confidence 54 555555434899999999988764
No 167
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.69 E-value=1.3e-16 Score=179.12 Aligned_cols=140 Identities=16% Similarity=0.141 Sum_probs=101.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH------------------------Hhhccccccccc--cc-
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI------------------------MAQVGSFVPASS--AE- 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~------------------------laq~g~~vp~~~--~~- 831 (1083)
..+++||+|++.+|++++|+||||||||||+|+|+++.. ..+...|+|+.. ..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (286)
T PRK13646 20 HQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLF 99 (286)
T ss_pred cCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhccc
Confidence 368999999999999999999999999999999986521 011123444431 00
Q ss_pred -cchH---------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 832 -LHVL---------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 832 -~~~~---------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.++. ..++..+|.. +........+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 100 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~ 179 (286)
T PRK13646 100 EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQ 179 (286)
T ss_pred hhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHH
Confidence 1111 2234456664 34455667888888887777766 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+ ..++..+.+..|.|||++||+++.+.
T Consensus 180 ~~~~l-~~~l~~l~~~~g~tvl~vtH~~~~~~ 210 (286)
T PRK13646 180 SKRQV-MRLLKSLQTDENKTIILVSHDMNEVA 210 (286)
T ss_pred HHHHH-HHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 87777 45666665435899999999998753
No 168
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.68 E-value=1e-16 Score=170.97 Aligned_cols=140 Identities=16% Similarity=0.126 Sum_probs=96.3
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc-------ccccccccc--ccchHHHH------------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV-------GSFVPASSA--ELHVLDGI------------ 838 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~-------g~~vp~~~~--~~~~~~~i------------ 838 (1083)
.++++++|++++|++++|+||||||||||||+|+++...... -.|+|.... ..++.+.+
T Consensus 19 ~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g~i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~ 98 (204)
T cd03250 19 FTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGSIAYVSQEPWIQNGTIRENILFGKPFDEERYE 98 (204)
T ss_pred ceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcCEEEEEecCchhccCcHHHHhccCCCcCHHHHH
Confidence 588899999999999999999999999999999876421110 134444311 12222222
Q ss_pred --HhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC
Q 001405 839 --YTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK 904 (1083)
Q Consensus 839 --~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~ 904 (1083)
...++..+.+. .....+++++++...+++. +.+|+++|+|||++|+|+.....+...++..+.+ .
T Consensus 99 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~ 177 (204)
T cd03250 99 KVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-N 177 (204)
T ss_pred HHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-C
Confidence 11222222221 2235677777776666665 6899999999999999998777776556655544 4
Q ss_pred CcEEEEEeCchHHHHH
Q 001405 905 KCMVLFVTHYPKIADI 920 (1083)
Q Consensus 905 ~~~vl~~TH~~~l~~l 920 (1083)
+.++|++||+++....
T Consensus 178 ~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 178 NKTRILVTHQLQLLPH 193 (204)
T ss_pred CCEEEEEeCCHHHHhh
Confidence 7899999999887653
No 169
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.4e-16 Score=176.26 Aligned_cols=141 Identities=14% Similarity=0.180 Sum_probs=97.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|..
T Consensus 22 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 101 (258)
T PRK14268 22 YGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQK 101 (258)
T ss_pred eCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecC
Confidence 3456789999999999999999999999999999999875321 1112244433
Q ss_pred cc--ccchHHH---------------------HHhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 829 SA--ELHVLDG---------------------IYTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 829 ~~--~~~~~~~---------------------i~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
.. ..++.+. ++..++.. +.+......+++++++...+++. +.+|+++|||||
T Consensus 102 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP 181 (258)
T PRK14268 102 PNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEP 181 (258)
T ss_pred CccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 1122222 22333331 12233455677888777766665 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++|+|+.....+ ..+++.+.+ ++++|++||+.+.+.
T Consensus 182 t~~LD~~~~~~l-~~~l~~l~~--~~tiiivsH~~~~~~ 217 (258)
T PRK14268 182 TSALDPISTARI-EDLIMNLKK--DYTIVIVTHNMQQAA 217 (258)
T ss_pred CcccCHHHHHHH-HHHHHHHhh--CCEEEEEECCHHHHH
Confidence 999999888777 455555643 689999999998753
No 170
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=1.5e-16 Score=173.16 Aligned_cols=141 Identities=16% Similarity=0.095 Sum_probs=101.4
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------------------hccccccccccc---cchH
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSAE---LHVL 835 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------------------q~g~~vp~~~~~---~~~~ 835 (1083)
++..++++++|++.+|++++|+||||+|||||+|+|+++.... +.-.++|.+... +++.
T Consensus 11 ~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~ 90 (232)
T cd03300 11 GGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQNYALFPHLTVF 90 (232)
T ss_pred CCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecccccCCCCcHH
Confidence 4457899999999999999999999999999999998653210 111234433111 1111
Q ss_pred ---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 836 ---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 836 ---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
+.++.++|..+.+......+++++++...+++. +.+|+++|||||++|+|+.....+
T Consensus 91 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l- 169 (232)
T cd03300 91 ENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDM- 169 (232)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH-
Confidence 234455666555566667788877776666655 689999999999999999888777
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+.++..+.++.|+++|++||+.+..
T Consensus 170 ~~~l~~~~~~~~~tiii~sh~~~~~ 194 (232)
T cd03300 170 QLELKRLQKELGITFVFVTHDQEEA 194 (232)
T ss_pred HHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4555556553489999999999864
No 171
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.7e-16 Score=175.02 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=96.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-----h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-----A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-----a--------------------q~g~~vp~~ 828 (1083)
+++..++++++|++.+|++++|+||||||||||||+|+++.- . . +...|+|+.
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 95 (253)
T PRK14242 16 YGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQK 95 (253)
T ss_pred ECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecC
Confidence 345578999999999999999999999999999999997631 0 0 111234433
Q ss_pred ccc--cchHHHH----------------------HhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+ +..++..+ .+......+++++++...+++. +.+|+++||||
T Consensus 96 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE 175 (253)
T PRK14242 96 PNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175 (253)
T ss_pred CCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111 1222222 12223211 1223345678888887777665 68899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.+||++||+.+...
T Consensus 176 Pt~~LD~~~~~~l~-~~l~~~~~--~~tvii~tH~~~~~~ 212 (253)
T PRK14242 176 PASALDPIATQKIE-ELIHELKA--RYTIIIVTHNMQQAA 212 (253)
T ss_pred CcccCCHHHHHHHH-HHHHHHhc--CCeEEEEEecHHHHH
Confidence 99999998877774 45555543 689999999997653
No 172
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.68 E-value=1.1e-16 Score=178.52 Aligned_cols=139 Identities=14% Similarity=0.188 Sum_probs=100.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------hhcccccccccc-----ccc--
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------AQVGSFVPASSA-----ELH-- 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------aq~g~~vp~~~~-----~~~-- 833 (1083)
++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+... ...
T Consensus 19 ~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~~~~~~ 98 (272)
T PRK15056 19 GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQSEEVDWSFPVLVE 98 (272)
T ss_pred CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEeccccccccCCCcchh
Confidence 45788999999999999999999999999999999865310 111234443310 000
Q ss_pred -----------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 834 -----------------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 834 -----------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
....++..+|..+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 01223455566555555667788888887776665 688999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
..+. .++..+.+ .|.+||++||+.+..
T Consensus 179 ~~l~-~~L~~~~~-~g~tviivsH~~~~~ 205 (272)
T PRK15056 179 ARII-SLLRELRD-EGKTMLVSTHNLGSV 205 (272)
T ss_pred HHHH-HHHHHHHh-CCCEEEEEeCCHHHH
Confidence 7774 55555655 588999999998765
No 173
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=8.7e-17 Score=186.74 Aligned_cols=143 Identities=16% Similarity=0.112 Sum_probs=105.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcccccccccc-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSA- 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~- 830 (1083)
++...+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+...
T Consensus 38 ~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l 117 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFAL 117 (400)
T ss_pred cCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcC
Confidence 4555689999999999999999999999999999999865310 011234554321
Q ss_pred --ccchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 --ELHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 --~~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.+++. ..++..+|..+......+.+++++++...+++. +.+|+++||||||+|||+
T Consensus 118 ~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~ 197 (400)
T PRK10070 118 MPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDP 197 (400)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCH
Confidence 11221 224555666666666677889988888777765 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.++.++|+||+||+.+.+.
T Consensus 198 ~~r~~l~-~~L~~l~~~~g~TIIivTHd~~~~~ 229 (400)
T PRK10070 198 LIRTEMQ-DELVKLQAKHQRTIVFISHDLDEAM 229 (400)
T ss_pred HHHHHHH-HHHHHHHHHCCCeEEEEECCHHHHH
Confidence 8888775 4455554435899999999998763
No 174
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.68 E-value=4.6e-17 Score=175.40 Aligned_cols=139 Identities=18% Similarity=0.220 Sum_probs=101.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hccccc---cccc-ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------------QVGSFV---PASS-AEL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------------q~g~~v---p~~~-~~~ 832 (1083)
..+++|++|++.+|+.++|+||||||||||+++++++.... ++| +| |... ..-
T Consensus 17 ~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG-~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG-LVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE-EEEECcccccccC
Confidence 48889999999999999999999999999999998654221 122 11 1111 000
Q ss_pred ch---------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HV---------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~---------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++ ++..+..+|..+.......+++++.+++..|+.. +.+|.++||||||+|||+....
T Consensus 96 tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~ 175 (235)
T COG1122 96 TVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175 (235)
T ss_pred cHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHH
Confidence 11 2334556677666667777788766665555544 7999999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ ..++..|.+..|.|+|++||+++...
T Consensus 176 ~l-~~~l~~L~~~~~~tii~~tHd~~~~~ 203 (235)
T COG1122 176 EL-LELLKKLKEEGGKTIIIVTHDLELVL 203 (235)
T ss_pred HH-HHHHHHHHhcCCCeEEEEeCcHHHHH
Confidence 77 56667777645789999999998775
No 175
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.68 E-value=1.4e-16 Score=175.23 Aligned_cols=144 Identities=16% Similarity=0.190 Sum_probs=100.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.... +...|+|..
T Consensus 11 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 90 (247)
T TIGR00972 11 YGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK 90 (247)
T ss_pred ECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecC
Confidence 34556889999999999999999999999999999998764211 111233433
Q ss_pred ccc--cchHHH----------------------HHhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDG----------------------IYTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~----------------------i~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+. ++..+|.. +.+......+++++++...+++. +.+|+++||||
T Consensus 91 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 170 (247)
T TIGR00972 91 PNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDE 170 (247)
T ss_pred cccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 110 122222 23334444 34445556788888887776665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
|++|+|+.....+ ..++..+.+ ++++|++||+++.. .+++
T Consensus 171 Pt~~LD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d 211 (247)
T TIGR00972 171 PTSALDPIATGKI-EELIQELKK--KYTIVIVTHNMQQAARISD 211 (247)
T ss_pred CcccCCHHHHHHH-HHHHHHHHh--cCeEEEEecCHHHHHHhCC
Confidence 9999999887777 455555655 48999999999865 3443
No 176
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=178.30 Aligned_cols=140 Identities=15% Similarity=0.078 Sum_probs=101.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccc----c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASS----A 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~----~ 830 (1083)
..+++||+|++.+|++++|+||||||||||+|+|+++... .+...|+|+.. .
T Consensus 20 ~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~ 99 (290)
T PRK13634 20 RRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLF 99 (290)
T ss_pred ccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhhh
Confidence 4689999999999999999999999999999999865311 11123455431 0
Q ss_pred ccchH---------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVL---------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~---------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
..++. +.++..+|.. +........+++++++...+++. +.+|+++|||||++|||+.
T Consensus 100 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 100 EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 11221 2234456664 33455667888888887777665 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+ ..++..+.++.|.|||++||+++.+.
T Consensus 180 ~~~~l-~~~L~~l~~~~g~tviiitHd~~~~~ 210 (290)
T PRK13634 180 GRKEM-MEMFYKLHKEKGLTTVLVTHSMEDAA 210 (290)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 87777 45566665535899999999998753
No 177
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.68 E-value=9.1e-17 Score=185.31 Aligned_cols=148 Identities=18% Similarity=0.121 Sum_probs=108.0
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------h------------hccccc
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------A------------QVGSFV 825 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------a------------q~g~~v 825 (1083)
+.++...+++|+||++.+|++++|+||||||||||||+|+++... . +...|+
T Consensus 32 ~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~v 111 (382)
T TIGR03415 32 DETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMV 111 (382)
T ss_pred HhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEE
Confidence 346777889999999999999999999999999999999854210 0 112344
Q ss_pred cccccc---cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 826 PASSAE---LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 826 p~~~~~---~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
++.... .++. ..++..+|+.+........++++|++...+++. +.+|+++|||||
T Consensus 112 fQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 112 FQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred ECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 433211 1122 223445566655566667888999888777776 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
++|||+.....+...+.+ +.++.+.|+||+||+++.+ .+++
T Consensus 192 ts~LD~~~r~~l~~~L~~-l~~~~~~TII~iTHdl~e~~~l~D 233 (382)
T TIGR03415 192 FSALDPLIRTQLQDELLE-LQAKLNKTIIFVSHDLDEALKIGN 233 (382)
T ss_pred CccCCHHHHHHHHHHHHH-HHHhcCCEEEEEeCCHHHHHHhCC
Confidence 999999988888655554 5543589999999999876 4444
No 178
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.68 E-value=1.4e-16 Score=183.95 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=104.1
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccc
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASS 829 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~ 829 (1083)
+.|++..+ |++|++.+|++++|+||||||||||||+|+++... .+...|+|+..
T Consensus 7 ~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~ 84 (354)
T TIGR02142 7 KRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEA 84 (354)
T ss_pred EEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCC
Confidence 34454444 89999999999999999999999999999865311 01112444331
Q ss_pred c---ccchH-------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 830 A---ELHVL-------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 830 ~---~~~~~-------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
. .+++. +.++..+|..+.......++++++++...+++. +.+|+++|||||++|+|+
T Consensus 85 ~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 85 RLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 (354)
T ss_pred ccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 1 11222 234455666655666677889888887777766 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
.....+. .++..+.++.|.++|++||+++.+. ++++
T Consensus 165 ~~~~~l~-~~L~~l~~~~g~tiiivtH~~~~~~~~~d~ 201 (354)
T TIGR02142 165 PRKYEIL-PYLERLHAEFGIPILYVSHSLQEVLRLADR 201 (354)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 8887774 4555555535899999999997663 4543
No 179
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.68 E-value=1.7e-16 Score=175.06 Aligned_cols=143 Identities=19% Similarity=0.113 Sum_probs=100.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------H------------hhcccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------M------------AQVGSFVP 826 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------l------------aq~g~~vp 826 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. + .+..+|++
T Consensus 13 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 92 (253)
T TIGR02323 13 YGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVH 92 (253)
T ss_pred eCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEE
Confidence 344568999999999999999999999999999999986521 0 01113444
Q ss_pred cccc-----ccch----------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 827 ASSA-----ELHV----------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 827 ~~~~-----~~~~----------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
.... .+.. ...++..++.. +........+++++++...+++. +.+|+++||
T Consensus 93 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlll 172 (253)
T TIGR02323 93 QNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFM 172 (253)
T ss_pred eCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 3311 0111 11234455554 34555666788888887776665 789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||++|+|+.....+.. ++..+.+..|.++|++||+.+...
T Consensus 173 DEP~~~LD~~~~~~l~~-~l~~~~~~~~~tii~vsH~~~~~~ 213 (253)
T TIGR02323 173 DEPTGGLDVSVQARLLD-LLRGLVRDLGLAVIIVTHDLGVAR 213 (253)
T ss_pred cCCCccCCHHHHHHHHH-HHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99999999988877754 444444435899999999988765
No 180
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.68 E-value=1.3e-16 Score=176.44 Aligned_cols=143 Identities=19% Similarity=0.140 Sum_probs=102.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------Hh------------hcccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------MA------------QVGSFVP 826 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------la------------q~g~~vp 826 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++.. +. +...|+|
T Consensus 16 ~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~ 95 (258)
T PRK11701 16 YGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVH 95 (258)
T ss_pred cCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEe
Confidence 344578999999999999999999999999999999986521 10 1123555
Q ss_pred cccc-----ccch----------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 827 ASSA-----ELHV----------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 827 ~~~~-----~~~~----------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
.... .++. +..++..++.. +.+......+++++++...+++. +.+|+++||
T Consensus 96 q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llll 175 (258)
T PRK11701 96 QHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFM 175 (258)
T ss_pred eCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 4421 0111 11234455654 24556677888888887777665 689999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||++|+|+.....+. .++..+.+..|.++|++||+.+.+.
T Consensus 176 DEPt~~LD~~~~~~l~-~~l~~~~~~~~~tii~isH~~~~~~ 216 (258)
T PRK11701 176 DEPTGGLDVSVQARLL-DLLRGLVRELGLAVVIVTHDLAVAR 216 (258)
T ss_pred cCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 9999999998777774 4555555435899999999998875
No 181
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.68 E-value=1.5e-16 Score=168.46 Aligned_cols=142 Identities=15% Similarity=0.124 Sum_probs=98.9
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------hccccccccc---cccchH--
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------QVGSFVPASS---AELHVL-- 835 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------q~g~~vp~~~---~~~~~~-- 835 (1083)
+++.+.+ ++|++.+|++++|+||||||||||+|+|+++.... +...|++... ...++.
T Consensus 12 ~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~tv~~~ 90 (195)
T PRK13541 12 EQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLKLEMTVFEN 90 (195)
T ss_pred CCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcCCCccCCHHHH
Confidence 3444555 99999999999999999999999999998753100 0112333321 111222
Q ss_pred --------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 836 --------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 836 --------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
..++..++..+......+.+++++++...+++. +.+|+++|+|||++|+|+.....+ ..++...
T Consensus 91 l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l-~~~l~~~ 169 (195)
T PRK13541 91 LKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLL-NNLIVMK 169 (195)
T ss_pred HHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHH
Confidence 223445565555556667888888777766665 688999999999999999876666 4555544
Q ss_pred HhCCCcEEEEEeCchHHHHHh
Q 001405 901 LEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.+ .+.++|++||+.+....+
T Consensus 170 ~~-~~~tiii~sh~~~~i~~~ 189 (195)
T PRK13541 170 AN-SGGIVLLSSHLESSIKSA 189 (195)
T ss_pred Hh-CCCEEEEEeCCccccchh
Confidence 44 689999999998766543
No 182
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.68 E-value=2.6e-16 Score=173.29 Aligned_cols=144 Identities=15% Similarity=0.194 Sum_probs=97.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--HH-----h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--IM-----A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--~l-----a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++. .. . +...|+|+.
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 92 (250)
T PRK14245 13 YGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQR 92 (250)
T ss_pred ECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecC
Confidence 34567899999999999999999999999999999998752 00 0 011334433
Q ss_pred ccc--cchHHH----------------------HHhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDG----------------------IYTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~----------------------i~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+. ++..++..+ .+......+++++++...+++. +.+|+++||||
T Consensus 93 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14245 93 PNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 110 122222 223333321 2233445677787777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
|++|+|+.....+. .++..+. .+++||++||+++.. ++++
T Consensus 173 Pt~~LD~~~~~~l~-~~l~~~~--~~~tiiivtH~~~~~~~~~d 213 (250)
T PRK14245 173 PASALDPISTAKVE-ELIHELK--KDYTIVIVTHNMQQAARVSD 213 (250)
T ss_pred CCccCCHHHHHHHH-HHHHHHh--cCCeEEEEeCCHHHHHhhCC
Confidence 99999998877774 5555554 368999999999865 4444
No 183
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.68 E-value=1.7e-16 Score=177.07 Aligned_cols=139 Identities=16% Similarity=0.120 Sum_probs=100.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccccccc----ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASS----AEL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~----~~~ 832 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++.. ..+...|+|+.. ...
T Consensus 15 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 94 (275)
T PRK13639 15 TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP 94 (275)
T ss_pred CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhhccc
Confidence 458899999999999999999999999999999986421 111123455442 111
Q ss_pred chHH---------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 833 HVLD---------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~~---------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.+ .++..++..+........+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 95 tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~ 174 (275)
T PRK13639 95 TVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGAS 174 (275)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHH
Confidence 2222 23344555444445566788888887766665 6899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+. .++..+.+ .|.+||++||+++.+.
T Consensus 175 ~l~-~~l~~l~~-~~~til~vtH~~~~~~ 201 (275)
T PRK13639 175 QIM-KLLYDLNK-EGITIIISTHDVDLVP 201 (275)
T ss_pred HHH-HHHHHHHH-CCCEEEEEecCHHHHH
Confidence 885 45555655 5899999999998764
No 184
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.1e-16 Score=177.06 Aligned_cols=139 Identities=16% Similarity=0.135 Sum_probs=98.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH------------------------Hhhccccccccc----c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI------------------------MAQVGSFVPASS----A 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~------------------------laq~g~~vp~~~----~ 830 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+.. .
T Consensus 20 ~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 99 (280)
T PRK13649 20 GRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLF 99 (280)
T ss_pred cceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhhhc
Confidence 358899999999999999999999999999999986531 011123555442 1
Q ss_pred ccchHHH---------------------HHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVLDG---------------------IYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~~~---------------------i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
..++.+. ++..++..+ ........+++++++...+++. +.+|+++||||||+|||+.
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~ 179 (280)
T PRK13649 100 EETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPK 179 (280)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 1122222 233445542 3345556788888887776665 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+. .++..+.+ .|.+||++||+++.+.
T Consensus 180 ~~~~l~-~~l~~~~~-~~~tiiivsH~~~~~~ 209 (280)
T PRK13649 180 GRKELM-TLFKKLHQ-SGMTIVLVTHLMDDVA 209 (280)
T ss_pred HHHHHH-HHHHHHHH-CCCEEEEEeccHHHHH
Confidence 777774 45555655 5889999999998663
No 185
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.67 E-value=1.9e-16 Score=191.26 Aligned_cols=146 Identities=15% Similarity=0.079 Sum_probs=107.7
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc----
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA---- 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~---- 830 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.++++...
T Consensus 12 ~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 91 (490)
T PRK10938 12 RLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDML 91 (490)
T ss_pred EcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhc
Confidence 34556699999999999999999999999999999999865311 011123332210
Q ss_pred -------ccch-------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 831 -------ELHV-------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 831 -------~~~~-------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.+.+ +..++.++|..+......+++++++++...+++. +.+|+++||||||+|||+...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~ 171 (490)
T PRK10938 92 SPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASR 171 (490)
T ss_pred ccchhhccccHHHhcccchhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHH
Confidence 0111 2345667777766677788999999888877776 689999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
..+. .++..+.+ .|.++|++||+.+.+ .+++
T Consensus 172 ~~l~-~~l~~~~~-~g~tvii~tH~~~~~~~~~d 203 (490)
T PRK10938 172 QQLA-ELLASLHQ-SGITLVLVLNRFDEIPDFVQ 203 (490)
T ss_pred HHHH-HHHHHHHh-cCCeEEEEeCCHHHHHhhCC
Confidence 7774 55666665 588999999998765 3444
No 186
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.67 E-value=2.6e-16 Score=170.41 Aligned_cols=142 Identities=13% Similarity=0.198 Sum_probs=99.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------------hhcccccccccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------------AQVGSFVPASSA 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------------aq~g~~vp~~~~ 830 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+...
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~ 100 (224)
T TIGR02324 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR 100 (224)
T ss_pred eEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEecccc
Confidence 4688999999999999999999999999999999865210 011234444321
Q ss_pred c---cchH---------------------HHHHhhCCcchhH-HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 831 E---LHVL---------------------DGIYTRMGASDSI-QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 831 ~---~~~~---------------------~~i~~~~~~~d~~-~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
. .++. ..++..+|..+.. ......+++++++...+++. +.+|+++|||||++|+
T Consensus 101 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~L 180 (224)
T TIGR02324 101 VIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASL 180 (224)
T ss_pred cCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 1 1111 1233444544322 33456677777777766665 6789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
|+.....+. .++..+.+ .|+++|++||+.+++. +++
T Consensus 181 D~~~~~~l~-~~l~~~~~-~g~tii~vsH~~~~~~~~~d 217 (224)
T TIGR02324 181 DAANRQVVV-ELIAEAKA-RGAALIGIFHDEEVRELVAD 217 (224)
T ss_pred CHHHHHHHH-HHHHHHHh-cCCEEEEEeCCHHHHHHhcc
Confidence 998888775 45555655 5899999999988764 444
No 187
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=180.37 Aligned_cols=144 Identities=14% Similarity=0.106 Sum_probs=103.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------h----hccccccccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------A----QVGSFVPASS 829 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------a----q~g~~vp~~~ 829 (1083)
...+++||+|++.+|++++|+|+||||||||+|+|+++.-. . +...||++..
T Consensus 19 ~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 19 WVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred CEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 34689999999999999999999999999999999876310 0 0123444432
Q ss_pred c-----ccch---------------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCc
Q 001405 830 A-----ELHV---------------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQS 873 (1083)
Q Consensus 830 ~-----~~~~---------------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~s 873 (1083)
. ...+ +..++..+|+.+ .+......++++|++...|++. +.+|+
T Consensus 99 ~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~ 178 (330)
T PRK15093 99 QSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPR 178 (330)
T ss_pred chhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCC
Confidence 1 0111 112344455542 2344556788899888777766 68999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
|||+||||+|||+.....+. .++..+.++.|.++||+|||++++. +++
T Consensus 179 llilDEPts~LD~~~~~~i~-~lL~~l~~~~g~tii~itHdl~~v~~~~d 227 (330)
T PRK15093 179 LLIADEPTNAMEPTTQAQIF-RLLTRLNQNNNTTILLISHDLQMLSQWAD 227 (330)
T ss_pred EEEEeCCCCcCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 99999999999998888775 4555566545899999999998874 443
No 188
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.67 E-value=5.1e-16 Score=152.51 Aligned_cols=141 Identities=21% Similarity=0.240 Sum_probs=102.5
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------------HHhhcccccccc-
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------------IMAQVGSFVPAS- 828 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------------~laq~g~~vp~~- 828 (1083)
++..++|++||.+.+|+..+||||+|||||||+|++|.+. +.+|....++..
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tV 93 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTV 93 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccch
Confidence 4678999999999999999999999999999999998653 233322222211
Q ss_pred --ccccc-----------hHHHHHhhCCcchhHH-hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 829 --SAELH-----------VLDGIYTRMGASDSIQ-QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 829 --~~~~~-----------~~~~i~~~~~~~d~~~-~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
+.-++ .+..++.+++..+.+. +....++++.+++..+++. ..-|.+++|||||+.||+.....|-
T Consensus 94 eDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie 173 (223)
T COG4619 94 EDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIE 173 (223)
T ss_pred hhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHH
Confidence 11111 2334677777766544 3445667766676666665 5789999999999999999999995
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.-+.++..+ .+..++++||+.+.+
T Consensus 174 ~mi~~~v~~-q~vAv~WiTHd~dqa 197 (223)
T COG4619 174 EMIHRYVRE-QNVAVLWITHDKDQA 197 (223)
T ss_pred HHHHHHhhh-hceEEEEEecChHHH
Confidence 444555444 789999999999874
No 189
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.67 E-value=2e-16 Score=174.54 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=99.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------h----------------hcccccccccc-c----
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------A----------------QVGSFVPASSA-E---- 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------a----------------q~g~~vp~~~~-~---- 831 (1083)
+.+++|++|++.+|++++|+||||||||||+|+|+++.-. . +...|+|.+.. .
T Consensus 16 ~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~ 95 (254)
T PRK10418 16 QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIATIMQNPRSAFNPL 95 (254)
T ss_pred cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEEEEecCCccccCcc
Confidence 4688999999999999999999999999999999876422 0 11224444321 0
Q ss_pred cch-------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 832 LHV-------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 832 ~~~-------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
..+ +..++..++..+ .+......+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~ 175 (254)
T PRK10418 96 HTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVA 175 (254)
T ss_pred ccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHH
Confidence 111 112334445433 2345556788888777776665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
...+ ..+++.+.++.|.+||++||+++...
T Consensus 176 ~~~l-~~~L~~~~~~~g~til~~sH~~~~~~ 205 (254)
T PRK10418 176 QARI-LDLLESIVQKRALGMLLVTHDMGVVA 205 (254)
T ss_pred HHHH-HHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 7777 45555555435899999999988753
No 190
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.67 E-value=2.2e-16 Score=165.32 Aligned_cols=130 Identities=15% Similarity=0.176 Sum_probs=90.9
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc----------------------ccccccccccchHHHH
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG----------------------SFVPASSAELHVLDGI 838 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g----------------------~~vp~~~~~~~~~~~i 838 (1083)
++++++|++.+|++++|+||||||||||||+|+++.... .| .|++.+... ..+
T Consensus 15 ~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~----~~~ 89 (182)
T cd03215 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPA-SGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR----EGL 89 (182)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC-CceEEECCEECCccCHHHHHhCCeEEecCCccc----Ccc
Confidence 899999999999999999999999999999998654211 11 112211000 012
Q ss_pred HhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 839 YTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 839 ~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
+..+...+++.... .+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.+ .+.++|++||+++.
T Consensus 90 ~~~~t~~e~l~~~~-~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~-~~l~~~~~-~~~tiii~sh~~~~ 166 (182)
T cd03215 90 VLDLSVAENIALSS-LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIY-RLIRELAD-AGKAVLLISSELDE 166 (182)
T ss_pred cCCCcHHHHHHHHh-hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHH-HHHHHHHH-CCCEEEEEeCCHHH
Confidence 23334444443221 177777776666655 6899999999999999998877775 55555655 58899999999865
Q ss_pred H
Q 001405 918 A 918 (1083)
Q Consensus 918 ~ 918 (1083)
.
T Consensus 167 ~ 167 (182)
T cd03215 167 L 167 (182)
T ss_pred H
Confidence 4
No 191
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.67 E-value=1.8e-16 Score=192.09 Aligned_cols=147 Identities=16% Similarity=0.188 Sum_probs=108.2
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhc-ccccccccc---
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQV-GSFVPASSA--- 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~-g~~vp~~~~--- 830 (1083)
.|+++.+++|++|++++|++++|+||||||||||||+|+++... ... -.|+|+...
T Consensus 20 ~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 99 (510)
T PRK15439 20 QYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFP 99 (510)
T ss_pred EeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCccCC
Confidence 34566799999999999999999999999999999999865311 001 124444321
Q ss_pred ccchH-----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHH
Q 001405 831 ELHVL-----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAI 892 (1083)
Q Consensus 831 ~~~~~-----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i 892 (1083)
.+++. ..++..++..+......+++++++++...+++. +.+|+++||||||+|+|+.....+
T Consensus 100 ~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 100 NLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred CCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 11222 224455666655666678899999888777775 689999999999999999888777
Q ss_pred HHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 893 AYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 893 ~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
. .++..+.+ .|.+||++||+.+.+ .++++
T Consensus 180 ~-~~l~~~~~-~g~tiiivtHd~~~~~~~~d~ 209 (510)
T PRK15439 180 F-SRIRELLA-QGVGIVFISHKLPEIRQLADR 209 (510)
T ss_pred H-HHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 4 55666665 589999999998765 45554
No 192
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.67 E-value=4.3e-16 Score=173.08 Aligned_cols=141 Identities=17% Similarity=0.123 Sum_probs=100.5
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc----
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA---- 830 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~---- 830 (1083)
+..+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+...
T Consensus 23 ~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~ 102 (265)
T TIGR02769 23 RAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVN 102 (265)
T ss_pred ceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhcC
Confidence 3578999999999999999999999999999999986521 0112234444310
Q ss_pred -ccchH----------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 831 -ELHVL----------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 831 -~~~~~----------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
..++. ..++..+|.. .........+++++++...+++. +.+|+++|||||++|||
T Consensus 103 ~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD 182 (265)
T TIGR02769 103 PRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLD 182 (265)
T ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 11111 2234455553 33445566788888887776665 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.....+. .++..+.+..|.+||++||+.+.+.
T Consensus 183 ~~~~~~l~-~~l~~~~~~~g~tiiivsH~~~~~~ 215 (265)
T TIGR02769 183 MVLQAVIL-ELLRKLQQAFGTAYLFITHDLRLVQ 215 (265)
T ss_pred HHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHH
Confidence 98777774 4555555434889999999998774
No 193
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=2.6e-16 Score=176.71 Aligned_cols=141 Identities=14% Similarity=0.113 Sum_probs=100.0
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccc----cc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASS----AE 831 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~----~~ 831 (1083)
.+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+++.. ..
T Consensus 20 ~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~ 99 (288)
T PRK13643 20 RALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE 99 (288)
T ss_pred cceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhccc
Confidence 588999999999999999999999999999999865311 11112444321 01
Q ss_pred cchHH---------------------HHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 832 LHVLD---------------------GIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 832 ~~~~~---------------------~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
.++.+ .++..++.. +........+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 100 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~ 179 (288)
T PRK13643 100 ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKA 179 (288)
T ss_pred chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHH
Confidence 12222 233444553 23345556778887777666665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
...+ ..++..+.+ .|.|||++||+++.+ .+++
T Consensus 180 ~~~l-~~~l~~l~~-~g~til~vtHd~~~~~~~~d 212 (288)
T PRK13643 180 RIEM-MQLFESIHQ-SGQTVVLVTHLMDDVADYAD 212 (288)
T ss_pred HHHH-HHHHHHHHH-CCCEEEEEecCHHHHHHhCC
Confidence 7777 456677765 589999999999866 3443
No 194
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=1.9e-16 Score=180.47 Aligned_cols=143 Identities=13% Similarity=0.072 Sum_probs=104.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------h----hcccccccccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------A----QVGSFVPASSA 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------a----q~g~~vp~~~~ 830 (1083)
..+++||||++.+|++++|+|+||||||||+++|+++.-. . +...++|++..
T Consensus 20 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 99 (326)
T PRK11022 20 FRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPM 99 (326)
T ss_pred EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCch
Confidence 3589999999999999999999999999999999876420 0 01234554321
Q ss_pred -----ccch----------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 831 -----ELHV----------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 831 -----~~~~----------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.+.+ ...++..+|+.+ .+......++++|++...|+++ +.+|+|||+||
T Consensus 100 ~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDE 179 (326)
T PRK11022 100 TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADE 179 (326)
T ss_pred hhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0111 123445566542 3455667889999888777776 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
||+|||+.....+. .++..+.++.|.++||+|||++++ .+++
T Consensus 180 Pts~LD~~~~~~il-~lL~~l~~~~g~til~iTHdl~~~~~~ad 222 (326)
T PRK11022 180 PTTALDVTIQAQII-ELLLELQQKENMALVLITHDLALVAEAAH 222 (326)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 99999998888774 455556554689999999999876 4554
No 195
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.67 E-value=4.3e-16 Score=169.36 Aligned_cols=137 Identities=16% Similarity=0.121 Sum_probs=97.1
Q ss_pred ccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh---------------cccccccccc---ccchHH-------
Q 001405 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ---------------VGSFVPASSA---ELHVLD------- 836 (1083)
Q Consensus 782 ~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq---------------~g~~vp~~~~---~~~~~~------- 836 (1083)
+++++|++.+|++++|+||||||||||+|+|+++..... ...++|+... .+++.+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 368999999999999999999999999999986542100 0123343211 112222
Q ss_pred ----------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001405 837 ----------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899 (1083)
Q Consensus 837 ----------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~ 899 (1083)
.++.+++..+......+.+++++++...+++. +.+|+++|||||++|+|+.....+.. ++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~-~l~~ 159 (230)
T TIGR01184 81 RVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQE-ELMQ 159 (230)
T ss_pred hcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHH-HHHH
Confidence 23444555555555667788888887777765 68999999999999999988887754 4444
Q ss_pred HHhCCCcEEEEEeCchHHHH
Q 001405 900 LLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 900 l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.++.|+++|++||+++...
T Consensus 160 ~~~~~~~tii~~sH~~~~~~ 179 (230)
T TIGR01184 160 IWEEHRVTVLMVTHDVDEAL 179 (230)
T ss_pred HHHhcCCEEEEEeCCHHHHH
Confidence 54435889999999987653
No 196
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.67 E-value=2.4e-16 Score=171.37 Aligned_cols=138 Identities=13% Similarity=0.060 Sum_probs=96.9
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------h----------------hcccccccccc-----ccc
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------A----------------QVGSFVPASSA-----ELH 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------a----------------q~g~~vp~~~~-----~~~ 833 (1083)
+++|++|++.+|++++|+||||||||||||+|+++... . +.-.|++.+.. .+.
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 46899999999999999999999999999999986432 0 11123443321 011
Q ss_pred hH---------------------HHHHhhCCcc---hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 834 VL---------------------DGIYTRMGAS---DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 834 ~~---------------------~~i~~~~~~~---d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+. ..++..++.. +........+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~ 160 (230)
T TIGR02770 81 MGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVN 160 (230)
T ss_pred HHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHH
Confidence 11 1233344444 23445566788888877766665 68899999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
...+. .++..+.++.+.++|++||+.+...
T Consensus 161 ~~~l~-~~l~~~~~~~~~tiii~sH~~~~~~ 190 (230)
T TIGR02770 161 QARVL-KLLRELRQLFGTGILLITHDLGVVA 190 (230)
T ss_pred HHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 77774 4555555434889999999988653
No 197
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.67 E-value=2.2e-16 Score=181.97 Aligned_cols=139 Identities=17% Similarity=0.161 Sum_probs=101.9
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccccc---cch--
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSAE---LHV-- 834 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~~---~~~-- 834 (1083)
|++|++.+|++++|+||||||||||||+|+++... .+...|+++.... +++
T Consensus 16 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 95 (352)
T PRK11144 16 TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHYKVRG 95 (352)
T ss_pred EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcccCCCCcHHH
Confidence 89999999999999999999999999999865311 0111234433211 122
Q ss_pred -------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 835 -------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 835 -------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
++.++..+|..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+
T Consensus 96 nl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~-~~L~~l 174 (352)
T PRK11144 96 NLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELL-PYLERL 174 (352)
T ss_pred HHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHH-HHHHHH
Confidence 2335566777666677778899888887777766 6899999999999999998887775 455555
Q ss_pred HhCCCcEEEEEeCchHHH-HHhhh
Q 001405 901 LEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
.++.|.++|++||+++.+ .++++
T Consensus 175 ~~~~g~tii~vTHd~~~~~~~~d~ 198 (352)
T PRK11144 175 AREINIPILYVSHSLDEILRLADR 198 (352)
T ss_pred HHhcCCeEEEEecCHHHHHHhCCE
Confidence 553589999999999755 45543
No 198
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.67 E-value=2.1e-16 Score=175.63 Aligned_cols=140 Identities=13% Similarity=0.047 Sum_probs=98.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc-----ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA-----ELH 833 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~-----~~~ 833 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|.... ...
T Consensus 26 ~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t 105 (267)
T PRK15112 26 VEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQR 105 (267)
T ss_pred cceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcCcchh
Confidence 4689999999999999999999999999999999865310 111234444311 000
Q ss_pred h----------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 834 V----------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 834 ~----------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+ +..++..+|+. +......+.+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 106 v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~ 185 (267)
T PRK15112 106 ISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMR 185 (267)
T ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHH
Confidence 0 12234555653 33344456788888777666655 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+. .++..+.+..|.+||++||+.+...
T Consensus 186 ~~l~-~~l~~~~~~~g~tviivsH~~~~~~ 214 (267)
T PRK15112 186 SQLI-NLMLELQEKQGISYIYVTQHLGMMK 214 (267)
T ss_pred HHHH-HHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 7774 4555555434889999999987764
No 199
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.67 E-value=2.3e-16 Score=173.45 Aligned_cols=140 Identities=15% Similarity=0.147 Sum_probs=100.8
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------hhcccccccccc---ccch----
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------AQVGSFVPASSA---ELHV---- 834 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------aq~g~~vp~~~~---~~~~---- 834 (1083)
+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+... ..++
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl 90 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQYL 90 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHHH
Confidence 68999999999999999999999999999999865310 011124443311 1111
Q ss_pred ----------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCC--------CCcEEEEeCCCCCCCHHHHH
Q 001405 835 ----------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT--------AQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 835 ----------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~--------~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++.++..++..+........+++++++...+++.+. +|+++|||||++|+|+....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 133455566655556666788888888888777753 56999999999999998877
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
.+. .++..+.+ .+.++|++||+.+.. .+++
T Consensus 171 ~l~-~~L~~~~~-~~~tvi~~sH~~~~~~~~~d 201 (248)
T PRK03695 171 ALD-RLLSELCQ-QGIAVVMSSHDLNHTLRHAD 201 (248)
T ss_pred HHH-HHHHHHHh-CCCEEEEEecCHHHHHHhCC
Confidence 774 55555655 588999999998854 4443
No 200
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=2e-16 Score=161.50 Aligned_cols=134 Identities=19% Similarity=0.233 Sum_probs=88.3
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLE 857 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~ 857 (1083)
+..++++++|++.+|++++|+||||+|||||+++|+++....+.-.++......-.....+...++... .+++
T Consensus 11 ~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~-------qlS~ 83 (157)
T cd00267 11 GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP-------QLSG 83 (157)
T ss_pred CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe-------eCCH
Confidence 446889999999999999999999999999999997653211111111111000000111111121111 1666
Q ss_pred HHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 858 ELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 858 e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ .++++|++||+++....
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~-~l~~~~~-~~~tii~~sh~~~~~~~ 145 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLE-LLRELAE-EGRTVIIVTHDPELAEL 145 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHHH-CCCEEEEEeCCHHHHHH
Confidence 66666555554 67899999999999999988777754 4545555 47899999999987753
No 201
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.67 E-value=3.3e-16 Score=170.52 Aligned_cols=136 Identities=18% Similarity=0.171 Sum_probs=96.3
Q ss_pred cccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccchHH-----
Q 001405 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHVLD----- 836 (1083)
Q Consensus 783 ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~~~----- 836 (1083)
.+++|++.+|++++|+||||||||||||+|+++... .....|+|+... .+++.+
T Consensus 16 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~ 95 (232)
T PRK10771 16 MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQENNLFSHLTVAQNIGLG 95 (232)
T ss_pred ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEecccccccCCcHHHHHhcc
Confidence 389999999999999999999999999999865310 011124443311 112222
Q ss_pred ----------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001405 837 ----------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899 (1083)
Q Consensus 837 ----------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~ 899 (1083)
.++..+|....+......+++++++...+++. +.+|+++|||||++|+|+.....+. .++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~-~~l~~ 174 (232)
T PRK10771 96 LNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEML-TLVSQ 174 (232)
T ss_pred cccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH-HHHHH
Confidence 23444555555555566788888887777665 7899999999999999998877774 45555
Q ss_pred HHhCCCcEEEEEeCchHHHH
Q 001405 900 LLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 900 l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.+..|+++|++||+.+...
T Consensus 175 ~~~~~~~tiii~sH~~~~~~ 194 (232)
T PRK10771 175 VCQERQLTLLMVSHSLEDAA 194 (232)
T ss_pred HHHhcCCEEEEEECCHHHHH
Confidence 54435889999999998753
No 202
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.5e-16 Score=173.28 Aligned_cols=140 Identities=17% Similarity=0.174 Sum_probs=96.3
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hccccccccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPASS 829 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~~ 829 (1083)
++..+++|++|++.+|++++|+||||||||||+|+|+++... . +...|+|+..
T Consensus 24 ~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~ 103 (260)
T PRK10744 24 GKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKP 103 (260)
T ss_pred CCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCC
Confidence 455789999999999999999999999999999999977420 0 0112334331
Q ss_pred c--ccchHHH----------------------HHhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 830 A--ELHVLDG----------------------IYTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 830 ~--~~~~~~~----------------------i~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
. ..++.+. ++..++.. +.+.....++++++++...+++. +.+|+++|||||
T Consensus 104 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEP 183 (260)
T PRK10744 104 TPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183 (260)
T ss_pred ccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCC
Confidence 1 1122222 22233321 22333445677788777766665 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++|+|+.....+ ..++..+.+ +.++|++||+.+...
T Consensus 184 t~~LD~~~~~~l-~~~L~~~~~--~~tiii~sH~~~~~~ 219 (260)
T PRK10744 184 CSALDPISTGRI-EELITELKQ--DYTVVIVTHNMQQAA 219 (260)
T ss_pred CccCCHHHHHHH-HHHHHHHhc--CCeEEEEeCCHHHHH
Confidence 999999877776 455555543 679999999987653
No 203
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=2.4e-16 Score=171.84 Aligned_cols=138 Identities=17% Similarity=0.162 Sum_probs=94.4
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc--ccchHHH
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA--ELHVLDG 837 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~--~~~~~~~ 837 (1083)
.++++++|++.+|++++|+||||||||||+|+|+++... .+...|+|.... ..++.+.
T Consensus 16 ~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~en 95 (234)
T cd03251 16 PVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAEN 95 (234)
T ss_pred cceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHH
Confidence 688999999999999999999999999999999866421 111234444321 1122222
Q ss_pred HHh---------------hCCcch-----------hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 838 IYT---------------RMGASD-----------SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 838 i~~---------------~~~~~d-----------~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+.. ..++.+ ........+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~ 175 (234)
T cd03251 96 IAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175 (234)
T ss_pred hhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 210 111111 1112234677777776666665 6899999999999999998887
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+ ..++..+. .+.++|++||+++....
T Consensus 176 ~l-~~~l~~~~--~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 176 LV-QAALERLM--KNRTTFVIAHRLSTIEN 202 (234)
T ss_pred HH-HHHHHHhc--CCCEEEEEecCHHHHhh
Confidence 77 45555554 37899999999987754
No 204
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.9e-16 Score=173.70 Aligned_cols=140 Identities=17% Similarity=0.234 Sum_probs=96.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-H--------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-M--------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-l--------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. . .+...|+|+.
T Consensus 31 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 110 (268)
T PRK14248 31 YGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQK 110 (268)
T ss_pred eCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecC
Confidence 456679999999999999999999999999999999988531 0 0111234433
Q ss_pred ccc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+ +..++.. +........+++++++...+++. +.+|+++||||
T Consensus 111 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDE 190 (268)
T PRK14248 111 PNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDE 190 (268)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcC
Confidence 111 1222222 1122221 12234455678888887766665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
||+|+|+.....+ ..++..+.+ +.+||++||+.+.+
T Consensus 191 Pt~~LD~~~~~~l-~~~l~~~~~--~~tiii~tH~~~~~ 226 (268)
T PRK14248 191 PASALDPISNAKI-EELITELKE--EYSIIIVTHNMQQA 226 (268)
T ss_pred CCcccCHHHHHHH-HHHHHHHhc--CCEEEEEEeCHHHH
Confidence 9999999888777 456655644 57999999998765
No 205
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.66 E-value=3.2e-16 Score=169.96 Aligned_cols=139 Identities=16% Similarity=0.166 Sum_probs=96.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~~ 836 (1083)
..++++++|++.+|++++|+||||||||||+++|+++... .+.-.|+|..... .++.+
T Consensus 27 ~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~ 106 (226)
T cd03248 27 TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQD 106 (226)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHH
Confidence 3689999999999999999999999999999999865310 1111234333110 11111
Q ss_pred H------------------------HHhhC--CcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 G------------------------IYTRM--GASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~------------------------i~~~~--~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
. ++..+ |..+.+......+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 107 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 107 NIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred HhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 1 12222 33333444456678788777666665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
..+. .++..+.+ +.++|++||++++...
T Consensus 187 ~~l~-~~l~~~~~--~~tii~~sh~~~~~~~ 214 (226)
T cd03248 187 QQVQ-QALYDWPE--RRTVLVIAHRLSTVER 214 (226)
T ss_pred HHHH-HHHHHHcC--CCEEEEEECCHHHHHh
Confidence 8775 44444543 5899999999987753
No 206
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=1.9e-16 Score=192.00 Aligned_cols=147 Identities=12% Similarity=0.098 Sum_probs=106.3
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhccccccccc--
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------------AQVGSFVPASS-- 829 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------------aq~g~~vp~~~-- 829 (1083)
.|++..+++|++|++++|++++|+||||||||||||+|+++... .+...|+|+..
T Consensus 14 ~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 93 (506)
T PRK13549 14 TFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL 93 (506)
T ss_pred EeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc
Confidence 35566799999999999999999999999999999999876431 01112344321
Q ss_pred -cccchH------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 830 -AELHVL------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 830 -~~~~~~------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
..+++. ..++.+++..+......+++++++++...+++. +.+|+++||||||+|
T Consensus 94 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~ 173 (506)
T PRK13549 94 VKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTAS 173 (506)
T ss_pred CCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCC
Confidence 111222 223444555444455567888888887777766 689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
||+.....+. .++..+.+ .|.++|++||+.+.+. ++++
T Consensus 174 LD~~~~~~l~-~~l~~l~~-~~~tvi~~tH~~~~~~~~~d~ 212 (506)
T PRK13549 174 LTESETAVLL-DIIRDLKA-HGIACIYISHKLNEVKAISDT 212 (506)
T ss_pred CCHHHHHHHH-HHHHHHHH-CCCEEEEEeCcHHHHHHhcCE
Confidence 9998888775 55555665 5889999999987664 5543
No 207
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.66 E-value=2.3e-16 Score=175.43 Aligned_cols=143 Identities=16% Similarity=0.142 Sum_probs=100.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------------------hccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------------------QVGSFVPA 827 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------------------q~g~~vp~ 827 (1083)
++++.++.|+||++.+|++++|+||||||||||||+|+++.... +...|+|+
T Consensus 11 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q 90 (272)
T PRK13547 11 RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQ 90 (272)
T ss_pred ECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecc
Confidence 45567899999999999999999999999999999998753211 11234443
Q ss_pred cc---cccchHHHH-------------------------HhhCCcchhHHhchhhhHHHHHHHHHHHHhCC---------
Q 001405 828 SS---AELHVLDGI-------------------------YTRMGASDSIQQGRSTFLEELNEASYILRNCT--------- 870 (1083)
Q Consensus 828 ~~---~~~~~~~~i-------------------------~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~--------- 870 (1083)
.. ..+++.+.+ +..+|..+......+++++++++...+++.+.
T Consensus 91 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 91 AAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred cCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 31 112233322 22333333334445677888888777777643
Q ss_pred -CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 871 -AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 871 -~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+++|||||++|+|+.....+. .++..+.+..|.++|++||+.+...
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~~~~~~~tviiisH~~~~~~ 219 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLL-DTVRRLARDWNLGVLAIVHDPNLAA 219 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHH-HHHHHHHHhcCCEEEEEECCHHHHH
Confidence 89999999999999998888775 4555555434899999999987653
No 208
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.6e-16 Score=172.64 Aligned_cols=141 Identities=17% Similarity=0.217 Sum_probs=97.1
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.-.. +..+|+|+.
T Consensus 17 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (254)
T PRK14273 17 YTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96 (254)
T ss_pred eCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeec
Confidence 34567899999999999999999999999999999998764310 011233433
Q ss_pred cc--ccchHHHHH----------------------hhCCc----chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGIY----------------------TRMGA----SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i~----------------------~~~~~----~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+. ..++. .+........+++++++...+++. +.+|+++||||
T Consensus 97 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 176 (254)
T PRK14273 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDE 176 (254)
T ss_pred cccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 11 122333221 11222 112233345677888887776665 68899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+.+.+.
T Consensus 177 Pt~~LD~~~~~~l~-~~l~~~~~--~~tvii~sH~~~~~~ 213 (254)
T PRK14273 177 PTSALDPISTGKIE-ELIINLKE--SYTIIIVTHNMQQAG 213 (254)
T ss_pred CCcccCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 99999998887775 45555543 689999999998753
No 209
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.66 E-value=2.4e-16 Score=190.85 Aligned_cols=147 Identities=13% Similarity=0.101 Sum_probs=106.4
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhccccccccc---c
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASS---A 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~---~ 830 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+.. .
T Consensus 13 ~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 92 (501)
T PRK10762 13 AFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP 92 (501)
T ss_pred EeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC
Confidence 34566799999999999999999999999999999999865311 11112444321 1
Q ss_pred ccchH-------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 831 ELHVL-------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 831 ~~~~~-------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
.+++. ..++.++|..+......+++++++++...+++. +.+|+++||||||+||
T Consensus 93 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 172 (501)
T PRK10762 93 QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172 (501)
T ss_pred CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCC
Confidence 11111 234445555555555667889999888777766 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
|+.....+. .++..+.+ .|.+||++||+.+.+ .++++
T Consensus 173 D~~~~~~l~-~~l~~l~~-~~~tvii~sHd~~~~~~~~d~ 210 (501)
T PRK10762 173 TDTETESLF-RVIRELKS-QGRGIVYISHRLKEIFEICDD 210 (501)
T ss_pred CHHHHHHHH-HHHHHHHH-CCCEEEEEeCCHHHHHHhCCE
Confidence 998887774 56666665 588999999998765 45553
No 210
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=2.7e-16 Score=176.91 Aligned_cols=138 Identities=14% Similarity=0.100 Sum_probs=97.2
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------------------------hhccccccccc----c
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------------------------AQVGSFVPASS----A 830 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------------------------aq~g~~vp~~~----~ 830 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|... .
T Consensus 25 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 104 (289)
T PRK13645 25 KALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLF 104 (289)
T ss_pred ceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhhh
Confidence 589999999999999999999999999999999865311 01113444431 0
Q ss_pred ccchHH---------------------HHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 831 ELHVLD---------------------GIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 831 ~~~~~~---------------------~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
..++.+ .++..++.. +......+.+++++++...+++. +.+|+++|||||++|+|+.
T Consensus 105 ~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~ 184 (289)
T PRK13645 105 QETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPK 184 (289)
T ss_pred hhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 111211 223334442 23344456788888887777665 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
....+ ..++..+.+..|++||++||+.+.+
T Consensus 185 ~~~~l-~~~l~~~~~~~~~tiiiisH~~~~~ 214 (289)
T PRK13645 185 GEEDF-INLFERLNKEYKKRIIMVTHNMDQV 214 (289)
T ss_pred HHHHH-HHHHHHHHHhcCCEEEEEecCHHHH
Confidence 77766 4555555543588999999998864
No 211
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.66 E-value=3.1e-16 Score=171.31 Aligned_cols=139 Identities=15% Similarity=0.135 Sum_probs=96.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc--ccchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA--ELHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~--~~~~~~ 836 (1083)
.++++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+... ..++.+
T Consensus 15 ~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 94 (237)
T cd03252 15 PVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRD 94 (237)
T ss_pred ccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHH
Confidence 5688999999999999999999999999999999865311 111234444421 112222
Q ss_pred HHH---------------hhCCcch-----------hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GIY---------------TRMGASD-----------SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i~---------------~~~~~~d-----------~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.+. ...+..+ .+......+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 95 nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~ 174 (237)
T cd03252 95 NIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESE 174 (237)
T ss_pred HhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHH
Confidence 221 1112111 1223346788888887776665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
..+. .++..+. .|.++|++||+++....
T Consensus 175 ~~l~-~~l~~~~--~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 175 HAIM-RNMHDIC--AGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHH-HHHHHhc--CCCEEEEEeCCHHHHHh
Confidence 7775 4455554 37899999999987653
No 212
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.66 E-value=3.8e-16 Score=171.79 Aligned_cols=142 Identities=21% Similarity=0.219 Sum_probs=94.9
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-Hhhcc----------------------cccccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-MAQVG----------------------SFVPASSAEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-laq~g----------------------~~vp~~~~~~ 832 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++.. -...| .|++.....+
T Consensus 11 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 90 (248)
T PRK09580 11 VEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEI 90 (248)
T ss_pred eCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhc
Confidence 445678999999999999999999999999999999998731 11111 1233221100
Q ss_pred ch-------------------------------HHHHHhhCCcchh-HHhch-hhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 833 HV-------------------------------LDGIYTRMGASDS-IQQGR-STFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 833 ~~-------------------------------~~~i~~~~~~~d~-~~~~~-stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
+. ++.++..++..+. ..... ..+++++++...+++. +.+|+++|||
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD 170 (248)
T PRK09580 91 PGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 170 (248)
T ss_pred cchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 00 0011111222111 11112 2578888777766665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||+|+|+.....+. .++..+.+ .+++||++||++++..
T Consensus 171 EPt~~LD~~~~~~l~-~~l~~l~~-~~~tiii~sH~~~~~~ 209 (248)
T PRK09580 171 ESDSGLDIDALKIVA-DGVNSLRD-GKRSFIIVTHYQRILD 209 (248)
T ss_pred CCCccCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCCHHHHH
Confidence 999999998877774 45566665 5889999999988765
No 213
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=3.8e-16 Score=172.01 Aligned_cols=140 Identities=16% Similarity=0.215 Sum_probs=97.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h------------------hcccccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A------------------QVGSFVPASSA 830 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a------------------q~g~~vp~~~~ 830 (1083)
+++..+++|++|++.+|++++|+||||||||||+++|+++.-. . ....|+|+...
T Consensus 13 ~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~ 92 (250)
T PRK14247 13 FGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN 92 (250)
T ss_pred ECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCc
Confidence 4456789999999999999999999999999999999986421 0 01123443321
Q ss_pred ---ccchHHHH-----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 831 ---ELHVLDGI-----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 831 ---~~~~~~~i-----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
..++.+.+ +..++.. +.+......+++++++...+++. +.+|+++||||
T Consensus 93 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 93 PIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred cCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 12233332 2223321 12333456788888887776665 68899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++..
T Consensus 173 P~~~LD~~~~~~l~-~~l~~~~~--~~tiii~sH~~~~~ 208 (250)
T PRK14247 173 PTANLDPENTAKIE-SLFLELKK--DMTIVLVTHFPQQA 208 (250)
T ss_pred CCccCCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHH
Confidence 99999998877774 45555543 68999999998865
No 214
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.66 E-value=4.3e-16 Score=168.29 Aligned_cols=139 Identities=14% Similarity=0.168 Sum_probs=97.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~~~ 836 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+....+ ++.+
T Consensus 17 ~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~e 96 (221)
T cd03244 17 PPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRS 96 (221)
T ss_pred cccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHH
Confidence 478999999999999999999999999999999986521 111123444432111 1111
Q ss_pred --------------HHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
..+.+++..+.+. .....+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 97 nl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~ 176 (221)
T cd03244 97 NLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 176 (221)
T ss_pred HhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHH
Confidence 2233344443332 3456777777777666665 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+ ..++..+.+ +.++|++||+.+....
T Consensus 177 ~l-~~~l~~~~~--~~tii~~sh~~~~~~~ 203 (221)
T cd03244 177 LI-QKTIREAFK--DCTVLTIAHRLDTIID 203 (221)
T ss_pred HH-HHHHHHhcC--CCEEEEEeCCHHHHhh
Confidence 77 455555543 5899999999987653
No 215
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-16 Score=172.94 Aligned_cols=141 Identities=14% Similarity=0.175 Sum_probs=97.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----hhc-----------------------ccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----AQV-----------------------GSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----aq~-----------------------g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... ... ..|+|+.
T Consensus 29 ~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 108 (267)
T PRK14235 29 YGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQK 108 (267)
T ss_pred ECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecC
Confidence 3456789999999999999999999999999999999986531 011 1233333
Q ss_pred ccc--cchHHH-----------------------HHhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SAE--LHVLDG-----------------------IYTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~~--~~~~~~-----------------------i~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
... .++.+. ++..++..+ .+.....++++++++...+++. +.+|+++|||
T Consensus 109 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLD 188 (267)
T PRK14235 109 PNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188 (267)
T ss_pred CCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 110 122222 223334322 2233456678888777666665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||++|+|+.....+ ..++..+.+ +.++|++||+++.+.
T Consensus 189 EPt~~LD~~~~~~l-~~~L~~l~~--~~tiiivtH~~~~~~ 226 (267)
T PRK14235 189 EPCSALDPIATAKV-EELIDELRQ--NYTIVIVTHSMQQAA 226 (267)
T ss_pred CCCcCCCHHHHHHH-HHHHHHHhc--CCeEEEEEcCHHHHH
Confidence 99999999877777 455555644 579999999988763
No 216
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=3.8e-16 Score=169.66 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=94.2
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~~ 836 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|..... .++.+
T Consensus 16 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~ 95 (229)
T cd03254 16 KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIME 95 (229)
T ss_pred CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHH
Confidence 4689999999999999999999999999999999865311 1112344443211 11222
Q ss_pred HH---------------HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GI---------------YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i---------------~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.+ ...++.... +......+++++++...+++. +.+|+++|||||++|||+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 96 NIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred HHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 11 111222111 112235677777776666665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
..+. .++..+. .+.++|++||+++....
T Consensus 176 ~~l~-~~l~~~~--~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 176 KLIQ-EALEKLM--KGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHH-HHHHHhc--CCCEEEEEecCHHHHhh
Confidence 7774 4555553 37899999999987653
No 217
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.2e-16 Score=173.32 Aligned_cols=144 Identities=15% Similarity=0.198 Sum_probs=99.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|..
T Consensus 30 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 109 (267)
T PRK14237 30 YGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQR 109 (267)
T ss_pred ECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecC
Confidence 4567899999999999999999999999999999999986421 1112344443
Q ss_pred ccc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+++ +..++.. +.+......+++++++...+++. +.+|+++||||
T Consensus 110 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 189 (267)
T PRK14237 110 PNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDE 189 (267)
T ss_pred CccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111 1222222 1222221 12334456788888777766665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++.. .+++
T Consensus 190 Pt~~LD~~~~~~l~-~~l~~~~~--~~tiii~tH~~~~~~~~~d 230 (267)
T PRK14237 190 PASALDPISTMQLE-ETMFELKK--NYTIIIVTHNMQQAARASD 230 (267)
T ss_pred CcccCCHHHHHHHH-HHHHHHhc--CCEEEEEecCHHHHHHhcC
Confidence 99999998777774 55555543 68999999998765 4444
No 218
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.9e-16 Score=172.93 Aligned_cols=141 Identities=15% Similarity=0.162 Sum_probs=95.8
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----h-----------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----A-----------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----a-----------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... . +...|+|+.
T Consensus 23 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~ 102 (269)
T PRK14259 23 YGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQ 102 (269)
T ss_pred ECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccC
Confidence 4456789999999999999999999999999999999876321 0 011244433
Q ss_pred ccc--cchHHHH--------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 829 SAE--LHVLDGI--------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 829 ~~~--~~~~~~i--------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
... .++.+.+ +..++.. +.+......+++++++...+++. +.+|+++|||||+
T Consensus 103 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt 182 (269)
T PRK14259 103 PNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPC 182 (269)
T ss_pred CccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 211 1222222 1122211 11222334577777777666665 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|||+.....+. .++..+.+ +.++|++||+++.+.
T Consensus 183 ~gLD~~~~~~l~-~~l~~~~~--~~tiiivtH~~~~~~ 217 (269)
T PRK14259 183 SALDPISTLKIE-ETMHELKK--NFTIVIVTHNMQQAV 217 (269)
T ss_pred ccCCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 999998877774 55555543 689999999987653
No 219
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.66 E-value=2.9e-16 Score=190.52 Aligned_cols=147 Identities=15% Similarity=0.152 Sum_probs=106.4
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------h-hccccccccc---c
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------A-QVGSFVPASS---A 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------a-q~g~~vp~~~---~ 830 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... . +.-.|+|+.. .
T Consensus 14 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~ 93 (510)
T PRK09700 14 SFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSVID 93 (510)
T ss_pred EcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccccC
Confidence 34566789999999999999999999999999999999865310 1 1113444331 1
Q ss_pred ccchHH----------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 831 ELHVLD----------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 831 ~~~~~~----------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
.+++.+ .++..+|..+......+++++++++...+++. +.+|+++||||||
T Consensus 94 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 173 (510)
T PRK09700 94 ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173 (510)
T ss_pred CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 111222 23444555544555567889999888877766 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+|||+.....+ ..++..+.+ .|.+||++||+.+.+. ++++
T Consensus 174 ~~LD~~~~~~l-~~~l~~l~~-~g~tiiivsHd~~~~~~~~d~ 214 (510)
T PRK09700 174 SSLTNKEVDYL-FLIMNQLRK-EGTAIVYISHKLAEIRRICDR 214 (510)
T ss_pred CCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 99999887777 456666666 5899999999987764 5553
No 220
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.66 E-value=3.3e-16 Score=174.99 Aligned_cols=140 Identities=16% Similarity=0.065 Sum_probs=101.2
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc----cccchH
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS----AELHVL 835 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~----~~~~~~ 835 (1083)
.+++|++|++.+|++++|+||||||||||+++|+++.. ..+..+|+++.. ...++.
T Consensus 21 ~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~ 100 (277)
T PRK13642 21 NQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVE 100 (277)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhhccCCHH
Confidence 58899999999999999999999999999999986531 111123444431 111222
Q ss_pred HH---------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 836 DG---------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 836 ~~---------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
+. ++..+|..+........+++++++...+++. +.+|+++|||||++|+|+.....+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 22 2333444444444556788888887777766 6899999999999999998888885
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.++..+.++.|.++|++||+++.+..
T Consensus 181 -~~l~~l~~~~g~tiil~sH~~~~~~~ 206 (277)
T PRK13642 181 -RVIHEIKEKYQLTVLSITHDLDEAAS 206 (277)
T ss_pred -HHHHHHHHhcCCEEEEEeCCHHHHHh
Confidence 55556665348999999999988754
No 221
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.66 E-value=4.6e-16 Score=174.55 Aligned_cols=141 Identities=16% Similarity=0.203 Sum_probs=97.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.- . .+...|+|+.
T Consensus 49 ~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~ 128 (286)
T PRK14275 49 YGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128 (286)
T ss_pred ECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCC
Confidence 445679999999999999999999999999999999998531 0 0011244443
Q ss_pred cccc--chHHH----------------------HHhhCCc----chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAEL--HVLDG----------------------IYTRMGA----SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~~--~~~~~----------------------i~~~~~~----~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
...+ ++.+. ++..++. .+.+......+++++++...+++. +.+|+++||||
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 208 (286)
T PRK14275 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDE 208 (286)
T ss_pred CCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2111 22222 2222332 123344456778888887776665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.+||++||+++...
T Consensus 209 Pt~gLD~~~~~~l~-~~L~~~~~--~~tvIivsH~~~~~~ 245 (286)
T PRK14275 209 PTSALDPKATAKIE-DLIQELRG--SYTIMIVTHNMQQAS 245 (286)
T ss_pred CCccCCHHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHH
Confidence 99999998777774 45555543 589999999998763
No 222
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.66 E-value=3.5e-16 Score=168.10 Aligned_cols=138 Identities=17% Similarity=0.161 Sum_probs=98.0
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccchHH---
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHVLD--- 836 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~~~--- 836 (1083)
++.|++|++.+|++++|+||||||||||+|+|+++... .+...|+|+... .+++.+
T Consensus 13 ~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~t~~en~~ 92 (213)
T TIGR01277 13 LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIG 92 (213)
T ss_pred cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEeccCccCCCCcHHHHHH
Confidence 34689999999999999999999999999999865311 111234444311 112222
Q ss_pred ------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 837 ------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 837 ------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
.++..+|..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~-~~l 171 (213)
T TIGR01277 93 LGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEML-ALV 171 (213)
T ss_pred hHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHH-HHH
Confidence 23444555554555566788888887777665 6899999999999999998887774 455
Q ss_pred HHHHhCCCcEEEEEeCchHHHH
Q 001405 898 DYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+.++.+.++|++||+.++..
T Consensus 172 ~~~~~~~~~tii~vsh~~~~~~ 193 (213)
T TIGR01277 172 KQLCSERQRTLLMVTHHLSDAR 193 (213)
T ss_pred HHHHHhcCCEEEEEeCCHHHHH
Confidence 5555435899999999988653
No 223
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.66 E-value=5.2e-16 Score=171.72 Aligned_cols=144 Identities=17% Similarity=0.197 Sum_probs=98.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... . +...|++..
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (258)
T PRK14241 14 YGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQR 93 (258)
T ss_pred ECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccc
Confidence 3455789999999999999999999999999999999986421 0 001233332
Q ss_pred cc---ccchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SA---ELHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~---~~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
.. ..++.+.+ +..++.. +........+++++++...+++. +.+|+++|||
T Consensus 94 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (258)
T PRK14241 94 PNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMD 173 (258)
T ss_pred cccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11 12222222 2223321 22334446677888777766665 5889999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
||++|+|+.....+ ..++..+.+ +.++|++||+.+.. .+++
T Consensus 174 EPt~~LD~~~~~~l-~~~l~~~~~--~~tviivsH~~~~~~~~~d 215 (258)
T PRK14241 174 EPCSALDPISTLAI-EDLINELKQ--DYTIVIVTHNMQQAARVSD 215 (258)
T ss_pred CCCccCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHHHhCC
Confidence 99999999887777 455555643 58999999998765 3443
No 224
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.66 E-value=6.8e-16 Score=171.58 Aligned_cols=140 Identities=14% Similarity=0.109 Sum_probs=99.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccccc--chHH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~~~--~~~~ 836 (1083)
...+++|++|++.+|++++|+||||+||||||++|+++.. +.+..+++|+...-+ ++.+
T Consensus 16 ~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~ 95 (275)
T cd03289 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK 95 (275)
T ss_pred CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHH
Confidence 3568999999999999999999999999999999987641 111224555543211 1112
Q ss_pred --------------HHHhhCCcchhHHhchhh-----------hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSIQQGRST-----------FLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~~~~st-----------f~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
..+..+|..+.+...... +++++++...+++. +.+|+++|||||++|+|+....
T Consensus 96 nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~ 175 (275)
T cd03289 96 NLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQ 175 (275)
T ss_pred HhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHH
Confidence 223345554444443333 88888887777776 6899999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+.. ++..+. .++|||++||+++....
T Consensus 176 ~l~~-~l~~~~--~~~tii~isH~~~~i~~ 202 (275)
T cd03289 176 VIRK-TLKQAF--ADCTVILSEHRIEAMLE 202 (275)
T ss_pred HHHH-HHHHhc--CCCEEEEEECCHHHHHh
Confidence 7754 444443 47999999999987653
No 225
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.66 E-value=4.6e-16 Score=170.54 Aligned_cols=139 Identities=15% Similarity=0.099 Sum_probs=97.3
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------hcccccccccc---ccch--------------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------QVGSFVPASSA---ELHV-------------- 834 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------q~g~~vp~~~~---~~~~-------------- 834 (1083)
+.++..++++.+|++++|+||||||||||||+|+++.... +...|+|+... ..++
T Consensus 13 ~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~ 92 (246)
T cd03237 13 FTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSITKDFYTH 92 (246)
T ss_pred EEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCceEEEecccccCCCCCCHHHHHHHHhhhcccc
Confidence 4444445555689999999999999999999998764211 01124444311 1111
Q ss_pred ---HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 001405 835 ---LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLF 910 (1083)
Q Consensus 835 ---~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~ 910 (1083)
...++..++..+......+.+++++++...+++. +.+|+++|||||++|||+.....+.. ++..+.++.+.++|+
T Consensus 93 ~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~-~l~~~~~~~~~tiii 171 (246)
T cd03237 93 PYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK-VIRRFAENNEKTAFV 171 (246)
T ss_pred HHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHHHHhcCCEEEE
Confidence 1234555666655666677888888887766665 68999999999999999988887754 455555435899999
Q ss_pred EeCchHHHH
Q 001405 911 VTHYPKIAD 919 (1083)
Q Consensus 911 ~TH~~~l~~ 919 (1083)
+||+.+++.
T Consensus 172 vsHd~~~~~ 180 (246)
T cd03237 172 VEHDIIMID 180 (246)
T ss_pred EeCCHHHHH
Confidence 999988765
No 226
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.65 E-value=5.2e-16 Score=172.57 Aligned_cols=143 Identities=15% Similarity=0.131 Sum_probs=100.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc-----
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA----- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~----- 830 (1083)
+.+++|++|++.+|++++|+||||||||||||+|+++.. ..+...|+|+...
T Consensus 25 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 104 (268)
T PRK10419 25 QTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNP 104 (268)
T ss_pred eeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhccCC
Confidence 578999999999999999999999999999999986521 0111233443310
Q ss_pred ccch----------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 ELHV----------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 ~~~~----------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
...+ ++.++.++|.. +........+++++++...+++. +.+|+++|||||++|+|+
T Consensus 105 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~ 184 (268)
T PRK10419 105 RKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDL 184 (268)
T ss_pred CCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 0111 12344555554 34455566778777776666655 789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
.....+. .+++.+.+..+.++|++||+.+... +++
T Consensus 185 ~~~~~~~-~~l~~~~~~~~~tiiivsH~~~~i~~~~d 220 (268)
T PRK10419 185 VLQAGVI-RLLKKLQQQFGTACLFITHDLRLVERFCQ 220 (268)
T ss_pred HHHHHHH-HHHHHHHHHcCcEEEEEECCHHHHHHhCC
Confidence 8777664 5555555435889999999998764 444
No 227
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.5e-16 Score=171.07 Aligned_cols=140 Identities=19% Similarity=0.215 Sum_probs=95.9
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hh--------------------ccccccccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQ--------------------VGSFVPASS 829 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq--------------------~g~~vp~~~ 829 (1083)
+++.+++|++|++.+|++++|+||||||||||||+|+++... .+ .-.|+|...
T Consensus 23 ~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~ 102 (259)
T PRK14274 23 GQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKG 102 (259)
T ss_pred CCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCC
Confidence 455789999999999999999999999999999999976421 10 012333321
Q ss_pred cc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 830 AE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 830 ~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
.. ..+.+.+ +..++.. +.+......+++++++...+++. +.+|+++|||||
T Consensus 103 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEP 182 (259)
T PRK14274 103 NPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEP 182 (259)
T ss_pred cccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 10 1122221 2223321 12233445677788777766665 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++|+|+.....+ ..++..+.+ +.++|++||+.+...
T Consensus 183 t~~LD~~~~~~l-~~~l~~~~~--~~tiiivtH~~~~~~ 218 (259)
T PRK14274 183 TSALDPVSTRKI-EELILKLKE--KYTIVIVTHNMQQAA 218 (259)
T ss_pred cccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHH
Confidence 999999877777 455555643 689999999987653
No 228
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.4e-16 Score=171.03 Aligned_cols=144 Identities=17% Similarity=0.227 Sum_probs=98.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-----h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-----A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-----a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.. . . +...|+|+.
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14256 14 FGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQK 93 (252)
T ss_pred eCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecC
Confidence 445678999999999999999999999999999999998741 0 0 011234433
Q ss_pred cc---ccchHHH----------------------HHhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SA---ELHVLDG----------------------IYTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~---~~~~~~~----------------------i~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
.. ..++.+. ++..++... ........+++++++...+++. +.+|+++|||
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 94 PNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 11 1122222 222333321 2223345677777777666665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
||++|+|+.....+ ..+++.+.+ +.++|++||+.+.. .+++
T Consensus 174 EP~~gLD~~~~~~l-~~~l~~~~~--~~tiiivsH~~~~~~~~~d 215 (252)
T PRK14256 174 EPASALDPISTLKI-EELIEELKE--KYTIIIVTHNMQQAARVSD 215 (252)
T ss_pred CCcccCCHHHHHHH-HHHHHHHHh--CCcEEEEECCHHHHHhhCC
Confidence 99999999877777 455666654 57999999998875 3443
No 229
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.65 E-value=3.7e-16 Score=169.47 Aligned_cols=142 Identities=16% Similarity=0.188 Sum_probs=96.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---Hh-----------------hcccccccccc---ccchH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---MA-----------------QVGSFVPASSA---ELHVL 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---la-----------------q~g~~vp~~~~---~~~~~ 835 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++.. .. +...|+|+... .+++.
T Consensus 20 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 99 (226)
T cd03234 20 ARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVR 99 (226)
T ss_pred cccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhcccEEEeCCCCccCcCCcHH
Confidence 578999999999999999999999999999999987653 11 01124443321 12232
Q ss_pred HHH-------------------------HhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 836 DGI-------------------------YTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 836 ~~i-------------------------~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+.+ +..++..+........+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 100 enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~ 179 (226)
T cd03234 100 ETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTA 179 (226)
T ss_pred HHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHH
Confidence 222 111222222222345667777776665555 688999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCch--HHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYP--KIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~--~l~~l~~ 922 (1083)
..+. .++..+.+ .+.++|++||+. ++.++++
T Consensus 180 ~~~~-~~l~~~~~-~~~tiii~sh~~~~~~~~~~d 212 (226)
T cd03234 180 LNLV-STLSQLAR-RNRIVILTIHQPRSDLFRLFD 212 (226)
T ss_pred HHHH-HHHHHHHH-CCCEEEEEecCCCHHHHHhCC
Confidence 7774 45555655 588999999997 4555554
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.65 E-value=5.2e-16 Score=188.78 Aligned_cols=148 Identities=14% Similarity=0.149 Sum_probs=106.0
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H--h-------------------------------
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M--A------------------------------- 819 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l--a------------------------------- 819 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|+++.. . .
T Consensus 9 ~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~ 88 (520)
T TIGR03269 9 KFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGT 88 (520)
T ss_pred EECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccccccccccc
Confidence 3455678999999999999999999999999999999998731 0 0
Q ss_pred --------------------hcccccccc-cc---ccchHH---------------------HHHhhCCcchhHHhchhh
Q 001405 820 --------------------QVGSFVPAS-SA---ELHVLD---------------------GIYTRMGASDSIQQGRST 854 (1083)
Q Consensus 820 --------------------q~g~~vp~~-~~---~~~~~~---------------------~i~~~~~~~d~~~~~~st 854 (1083)
+...++|+. .. ...+.+ .++..+|..+......++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 168 (520)
T TIGR03269 89 LEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD 168 (520)
T ss_pred ccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCccc
Confidence 001233332 10 111111 234455555555556778
Q ss_pred hHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 855 FLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 855 f~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+++++++...+++. +.+|+++||||||+|||+.....+. .+++.+.++.|.+||++||+.+.+. ++++
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivtHd~~~~~~~~d~ 238 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVH-NALEEAVKASGISMVLTSHWPEVIEDLSDK 238 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHH-HHHHHHHHhcCcEEEEEeCCHHHHHHhcCE
Confidence 89998888777776 6899999999999999998888875 4555554435899999999988763 5543
No 231
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.7e-16 Score=170.06 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=96.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.-. .+...|+|+.
T Consensus 13 ~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14262 13 YGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQK 92 (250)
T ss_pred eCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecC
Confidence 3456789999999999999999999999999999999975320 0112233433
Q ss_pred cc--ccchHHHH----------------------HhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGI----------------------YTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i----------------------~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+ +..++..+ ........+++++++...+++. +.+|+++||||
T Consensus 93 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 93 PTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 11 11222222 11122211 1233445677777777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIK 921 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~ 921 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++.+ .++
T Consensus 173 P~~~LD~~~~~~l~-~~l~~~~~--~~tili~sH~~~~~~~~~ 212 (250)
T PRK14262 173 PTSALDPIATQRIE-KLLEELSE--NYTIVIVTHNIGQAIRIA 212 (250)
T ss_pred CccccCHHHHHHHH-HHHHHHhc--CcEEEEEeCCHHHHHHhC
Confidence 99999998877774 55555544 68999999998854 344
No 232
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.65 E-value=4.4e-16 Score=170.21 Aligned_cols=140 Identities=12% Similarity=0.094 Sum_probs=95.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc--ccchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA--ELHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~--~~~~~~ 836 (1083)
..+++|++|++.+|++++|+|||||||||||++|+++... .+...|+|+... ..++.+
T Consensus 16 ~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e 95 (238)
T cd03249 16 VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAE 95 (238)
T ss_pred ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHH
Confidence 4688999999999999999999999999999999876310 111234444321 112222
Q ss_pred HHH---------------hhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GIY---------------TRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i~---------------~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
.+. ...+..+. .......+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 96 NIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred HhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 221 11111111 112234677888777776665 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+. .++..+. .|+++|++||+++...++
T Consensus 176 ~~l~-~~l~~~~--~g~~vi~~sh~~~~~~~~ 204 (238)
T cd03249 176 KLVQ-EALDRAM--KGRTTIVIAHRLSTIRNA 204 (238)
T ss_pred HHHH-HHHHHhc--CCCEEEEEeCCHHHHhhC
Confidence 7774 5555553 488999999999877543
No 233
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.65 E-value=1.9e-16 Score=159.20 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=82.7
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhH
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFL 856 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~ 856 (1083)
++..++++++|++.+|++++|+||||+|||||+++|+++.. .....+.+... ..++. ...++
T Consensus 11 ~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---------~~~G~i~~~~~--~~i~~-------~~~lS 72 (144)
T cd03221 11 GGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---------PDEGIVTWGST--VKIGY-------FEQLS 72 (144)
T ss_pred CCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---------CCceEEEECCe--EEEEE-------EccCC
Confidence 34467889999999999999999999999999999975432 11111111000 00110 00166
Q ss_pred HHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 857 EELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 857 ~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++++...+++. +.+|+++|+|||++|+|+.....+. .++..+ +.++|++||+.+...
T Consensus 73 ~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~-~~l~~~----~~til~~th~~~~~~ 131 (144)
T cd03221 73 GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALE-EALKEY----PGTVILVSHDRYFLD 131 (144)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHc----CCEEEEEECCHHHHH
Confidence 666665555554 6899999999999999998776663 344332 469999999988763
No 234
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=5.4e-16 Score=170.40 Aligned_cols=141 Identities=16% Similarity=0.179 Sum_probs=97.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhccccccccccc-
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSAE- 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~~- 831 (1083)
|+++.+++|++|++.+|++++|+||||||||||+|+|+++.- ..+...|+|+....
T Consensus 12 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~ 91 (246)
T PRK14269 12 YGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91 (246)
T ss_pred ECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccc
Confidence 445678999999999999999999999999999999997631 01111344443110
Q ss_pred -cchHH-----------------------HHHhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 832 -LHVLD-----------------------GIYTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 832 -~~~~~-----------------------~i~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
.++.+ .++..++.. +........+++++++...+++. +.+|+++|||||++
T Consensus 92 ~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 171 (246)
T PRK14269 92 VKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTS 171 (246)
T ss_pred cccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 11222 233344442 12233445677777777666665 68999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|+|+.....+. .++..+.+ +.++|++||+.+...
T Consensus 172 ~LD~~~~~~l~-~~l~~~~~--~~tiii~tH~~~~~~ 205 (246)
T PRK14269 172 ALDPISSGVIE-ELLKELSH--NLSMIMVTHNMQQGK 205 (246)
T ss_pred cCCHHHHHHHH-HHHHHHhC--CCEEEEEecCHHHHH
Confidence 99998777774 45555543 789999999988653
No 235
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.4e-16 Score=169.84 Aligned_cols=141 Identities=18% Similarity=0.189 Sum_probs=97.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|..
T Consensus 15 ~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 94 (251)
T PRK14244 15 YGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQK 94 (251)
T ss_pred ECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecC
Confidence 4456789999999999999999999999999999999877420 0111244443
Q ss_pred cccc--chHHH-----------------------HHhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SAEL--HVLDG-----------------------IYTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~~~--~~~~~-----------------------i~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
...+ ++.+. ++..++..+ .+......+++++++...+++. +.+|+++|||
T Consensus 95 ~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 174 (251)
T PRK14244 95 PNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMD 174 (251)
T ss_pred cccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 2111 11221 233344322 2233445677777777666665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||++|+|+.....+ ..++..+. .+.++|++||+.+...
T Consensus 175 EPt~~LD~~~~~~l-~~~l~~~~--~~~tiiiisH~~~~~~ 212 (251)
T PRK14244 175 EPCSALDPVATNVI-ENLIQELK--KNFTIIVVTHSMKQAK 212 (251)
T ss_pred CCCccCCHHHHHHH-HHHHHHHh--cCCeEEEEeCCHHHHH
Confidence 99999999877776 45665554 3789999999998653
No 236
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.65 E-value=6.4e-16 Score=170.33 Aligned_cols=141 Identities=18% Similarity=0.195 Sum_probs=96.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----hhc-----------------------ccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----AQV-----------------------GSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----aq~-----------------------g~~vp~~ 828 (1083)
++...++++++|++.+|++++|+||||||||||+|+|+++... ... ..|+++.
T Consensus 14 ~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (251)
T PRK14251 14 YGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQ 93 (251)
T ss_pred ECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecC
Confidence 3455789999999999999999999999999999999987520 001 1133332
Q ss_pred cc--ccchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+ +..++.. +.+......+++++++...+++. +.+|+++||||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDE 173 (251)
T PRK14251 94 PTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDE 173 (251)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 11 01222222 2223331 22334455677777776666655 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+ ..++..+.+ +.++|++||+++...
T Consensus 174 P~~~LD~~~~~~l-~~~l~~~~~--~~tiiiisH~~~~~~ 210 (251)
T PRK14251 174 PTSALDPISSSEI-EETLMELKH--QYTFIMVTHNLQQAG 210 (251)
T ss_pred CCccCCHHHHHHH-HHHHHHHHc--CCeEEEEECCHHHHH
Confidence 9999999877777 455555543 689999999998653
No 237
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.65 E-value=5.9e-16 Score=170.70 Aligned_cols=141 Identities=21% Similarity=0.250 Sum_probs=96.7
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-Hhhc---------------------c-ccccccccc--
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-MAQV---------------------G-SFVPASSAE-- 831 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-laq~---------------------g-~~vp~~~~~-- 831 (1083)
++..+++|++|++.+|++++|+||||||||||+|+|+++.. -..- + .++++....
T Consensus 18 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~ 97 (252)
T CHL00131 18 NENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPIEIP 97 (252)
T ss_pred CCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEeccccccc
Confidence 34578999999999999999999999999999999998520 0001 1 122222100
Q ss_pred -cch----------------------------HHHHHhhCCcch-hHHhchh-hhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 832 -LHV----------------------------LDGIYTRMGASD-SIQQGRS-TFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 832 -~~~----------------------------~~~i~~~~~~~d-~~~~~~s-tf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.+. +..++..++..+ .+..... .+++++++...+++. +.+|+++||||
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDE 177 (252)
T CHL00131 98 GVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDE 177 (252)
T ss_pred cccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 001 112333444432 2233333 478888777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ .|.++|++||+.++..
T Consensus 178 Pt~~LD~~~~~~l~-~~l~~~~~-~g~tii~~tH~~~~~~ 215 (252)
T CHL00131 178 TDSGLDIDALKIIA-EGINKLMT-SENSIILITHYQRLLD 215 (252)
T ss_pred CcccCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCHHHHH
Confidence 99999998888775 55555655 5899999999998765
No 238
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.65 E-value=7.7e-16 Score=169.79 Aligned_cols=144 Identities=17% Similarity=0.165 Sum_probs=97.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-----h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-----A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-----a--------------------q~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+|||||||||||++|+++.. . . +...|+|+.
T Consensus 15 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 94 (252)
T PRK14239 15 YNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQ 94 (252)
T ss_pred ECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecC
Confidence 345678999999999999999999999999999999987521 0 0 111234433
Q ss_pred cc--ccchHHHHH----------------------hhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGIY----------------------TRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i~----------------------~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+. ..++.. +........+++++++...+++. +.+|+++||||
T Consensus 95 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 174 (252)
T PRK14239 95 PNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDE 174 (252)
T ss_pred CccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11 122333321 112211 11223345677777777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++.. .+++
T Consensus 175 Pt~~LD~~~~~~l~-~~l~~~~~--~~tii~~sH~~~~~~~~~d 215 (252)
T PRK14239 175 PTSALDPISAGKIE-ETLLGLKD--DYTMLLVTRSMQQASRISD 215 (252)
T ss_pred CccccCHHHHHHHH-HHHHHHhh--CCeEEEEECCHHHHHHhCC
Confidence 99999998887774 55555544 58999999998754 3443
No 239
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=6.9e-16 Score=175.32 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=101.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------------------hhcc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------------------AQVG 822 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------------------aq~g 822 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++... .+.-
T Consensus 39 ~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 39 LVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred ccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 3699999999999999999999999999999999865210 0111
Q ss_pred ccccccc----cccchH---------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEE
Q 001405 823 SFVPASS----AELHVL---------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLV 875 (1083)
Q Consensus 823 ~~vp~~~----~~~~~~---------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLv 875 (1083)
.|+++.. ...++. ..++..+|.. +........+++++++...+++. +.+|+++
T Consensus 119 g~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iL 198 (320)
T PRK13631 119 SMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEIL 198 (320)
T ss_pred EEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 2344321 011111 1234445554 34455566788888887777766 6899999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 876 IVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 876 llDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
||||||+|||+.....+. .++..+.+ .|.|||++||+++.+ .+++
T Consensus 199 LLDEPtsgLD~~~~~~l~-~~L~~l~~-~g~TiiivtHd~~~~~~~ad 244 (320)
T PRK13631 199 IFDEPTAGLDPKGEHEMM-QLILDAKA-NNKTVFVITHTMEHVLEVAD 244 (320)
T ss_pred EEECCccCCCHHHHHHHH-HHHHHHHH-CCCEEEEEecCHHHHHHhCC
Confidence 999999999998887775 55555655 589999999999865 4443
No 240
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=7.2e-16 Score=168.20 Aligned_cols=138 Identities=21% Similarity=0.178 Sum_probs=98.7
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhccccccccccc---cchH----
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSAE---LHVL---- 835 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~~---~~~~---- 835 (1083)
+++|++|++.+|++++|+||||+|||||+++|+++... .+.-.++|+.... .++.
T Consensus 14 ~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~ 93 (235)
T cd03299 14 KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQNYALFPHMTVYKNIA 93 (235)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeecCccCCCccHHHHHH
Confidence 78999999999999999999999999999999865311 0111233333111 1111
Q ss_pred -----------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 836 -----------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 836 -----------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
..++..+|....+......+++++++...+++. +.+|+++|||||++|+|+.....+ +.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l-~~~l 172 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKL-REEL 172 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHH-HHHH
Confidence 123445555555555666788888777666665 689999999999999999877766 5566
Q ss_pred HHHHhCCCcEEEEEeCchHHHH
Q 001405 898 DYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+....++++|++||+++...
T Consensus 173 ~~~~~~~~~tili~tH~~~~~~ 194 (235)
T cd03299 173 KKIRKEFGVTVLHVTHDFEEAW 194 (235)
T ss_pred HHHHHhcCCEEEEEecCHHHHH
Confidence 6665534899999999997653
No 241
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=4e-16 Score=183.11 Aligned_cols=139 Identities=14% Similarity=0.121 Sum_probs=100.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc-----c--cccc---ccccccch--------------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV-----G--SFVP---ASSAELHV-------------- 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~-----g--~~vp---~~~~~~~~-------------- 834 (1083)
+++++|++|++.+|++++|+||||||||||||+|+++...... | .+++ .....+++
T Consensus 37 ~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~i~~~~~l~~~lTV~EnL~l~~~~~~~~ 116 (549)
T PRK13545 37 HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLTGIENIELKGLMMGLT 116 (549)
T ss_pred ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeeeEEeccccCCCCcHHHHHHhhhhhcCCC
Confidence 4688999999999999999999999999999999876421110 0 0000 00001111
Q ss_pred -------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001405 835 -------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC 906 (1083)
Q Consensus 835 -------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~ 906 (1083)
...++..++..+.+......+++++++...+++. +.+|+++|||||++|||+.....+.. ++..+.+ .|+
T Consensus 117 ~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~Lle-lL~el~~-~G~ 194 (549)
T PRK13545 117 KEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLD-KMNEFKE-QGK 194 (549)
T ss_pred HHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHH-HHHHHHh-CCC
Confidence 1234455666666666778889888887776665 68899999999999999988777754 4555555 589
Q ss_pred EEEEEeCchHHHH
Q 001405 907 MVLFVTHYPKIAD 919 (1083)
Q Consensus 907 ~vl~~TH~~~l~~ 919 (1083)
++|++||+++...
T Consensus 195 TIIIVSHdl~~i~ 207 (549)
T PRK13545 195 TIFFISHSLSQVK 207 (549)
T ss_pred EEEEEECCHHHHH
Confidence 9999999987653
No 242
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.64 E-value=8.1e-16 Score=169.39 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=95.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+.
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14240 13 YGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQ 92 (250)
T ss_pred ECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecC
Confidence 3445689999999999999999999999999999999875320 0011244443
Q ss_pred ccc--cchHHHHH----------------------hhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGIY----------------------TRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i~----------------------~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+. ..++.. +.......++++++++...+++. +.+|+++||||
T Consensus 93 ~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 172 (250)
T PRK14240 93 PNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDE 172 (250)
T ss_pred CccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 211 22333221 112211 11223345678888777766665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+.+..
T Consensus 173 P~~~LD~~~~~~l~-~~l~~~~~--~~tiii~sH~~~~~ 208 (250)
T PRK14240 173 PTSALDPISTLKIE-ELIQELKK--DYTIVIVTHNMQQA 208 (250)
T ss_pred CCccCCHHHHHHHH-HHHHHHhc--CCeEEEEEeCHHHH
Confidence 99999998887774 45555543 68999999998754
No 243
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.64 E-value=9.5e-16 Score=174.91 Aligned_cols=143 Identities=14% Similarity=0.117 Sum_probs=103.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhcccccccccc-----
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASSA----- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~~----- 830 (1083)
..+++||+|++.+|++++|+|+||||||||+|+|+++.. ......||+++..
T Consensus 34 ~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 113 (331)
T PRK15079 34 LKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNP 113 (331)
T ss_pred eEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCC
Confidence 468999999999999999999999999999999986421 0111234444320
Q ss_pred ccchHH-----------------------HHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 831 ELHVLD-----------------------GIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 831 ~~~~~~-----------------------~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.+++.+ .++.+++.. +........++++|++...|++. +.+|+|||+||||+|||
T Consensus 114 ~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD 193 (331)
T PRK15079 114 RMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD 193 (331)
T ss_pred CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 122222 234445552 23455566788899888777776 78999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
+.....+. .++..+.++.|.++||+|||++++. +++
T Consensus 194 ~~~~~~i~-~lL~~l~~~~~~til~iTHdl~~~~~~~d 230 (331)
T PRK15079 194 VSIQAQVV-NLLQQLQREMGLSLIFIAHDLAVVKHISD 230 (331)
T ss_pred HHHHHHHH-HHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 98888875 4555665545899999999998875 444
No 244
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.64 E-value=6.7e-16 Score=166.47 Aligned_cols=140 Identities=14% Similarity=0.098 Sum_probs=97.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhcccccccccc--cc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSA--EL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~--~~ 832 (1083)
..++++++|++.+|++++|+|||||||||||++|+++... .+.-.|++.... ..
T Consensus 14 ~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 93 (218)
T cd03290 14 LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNA 93 (218)
T ss_pred CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccc
Confidence 4688999999999999999999999999999999865310 011124444321 11
Q ss_pred chHHHH--------------HhhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 833 HVLDGI--------------YTRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 833 ~~~~~i--------------~~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
++.+.+ ...++..+.+ ......+++++++...+++. +.+|+++|||||++|+|+
T Consensus 94 t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 173 (218)
T cd03290 94 TVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDI 173 (218)
T ss_pred cHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCH
Confidence 222222 2222222111 12345678888887777665 688999999999999999
Q ss_pred HHHHHHHHH-HHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYA-TLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~-il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+... +++.+.+ .|.++|++||+.+...
T Consensus 174 ~~~~~l~~~~ll~~~~~-~~~tii~~sH~~~~~~ 206 (218)
T cd03290 174 HLSDHLMQEGILKFLQD-DKRTLVLVTHKLQYLP 206 (218)
T ss_pred HHHHHHHHHHHHHHHhc-CCCEEEEEeCChHHHh
Confidence 888877653 6666655 5899999999998764
No 245
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=8.8e-16 Score=171.27 Aligned_cols=141 Identities=16% Similarity=0.154 Sum_probs=96.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+|||||||||||++|+++.-. . +...|+|+.
T Consensus 30 ~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~ 109 (274)
T PRK14265 30 YGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQR 109 (274)
T ss_pred eCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccC
Confidence 3456789999999999999999999999999999999875310 0 111244443
Q ss_pred ccc--cchHHHH--------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 829 SAE--LHVLDGI--------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 829 ~~~--~~~~~~i--------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
... ..+.+.+ +..++.. +........+++++++...+++. +.+|+++|||||+
T Consensus 110 ~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt 189 (274)
T PRK14265 110 PNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPC 189 (274)
T ss_pred CccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCc
Confidence 211 1222222 1122221 12223345677777776666655 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|||+.....+. .++..+.+ +++||++||+.+...
T Consensus 190 ~~LD~~~~~~l~-~~L~~~~~--~~tiii~sH~~~~~~ 224 (274)
T PRK14265 190 SALDPISTRQVE-ELCLELKE--QYTIIMVTHNMQQAS 224 (274)
T ss_pred ccCCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 999998877775 45555543 689999999997664
No 246
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=7.8e-16 Score=172.54 Aligned_cols=141 Identities=17% Similarity=0.203 Sum_probs=98.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|+.
T Consensus 49 ~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~ 128 (285)
T PRK14254 49 YGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQK 128 (285)
T ss_pred ECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecC
Confidence 4556799999999999999999999999999999999876320 0011234433
Q ss_pred ccc--cchHHH--------------------HHhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 829 SAE--LHVLDG--------------------IYTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 829 ~~~--~~~~~~--------------------i~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
... ..+.+. ++..++.. +.+......+++++++...+++. +.+|+|+|||||+
T Consensus 129 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPt 208 (285)
T PRK14254 129 PNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPA 208 (285)
T ss_pred CccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 111 112221 22333432 23344556788888877766665 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ ..++..+.+ +.++|++||+.+.+.
T Consensus 209 s~LD~~~~~~l-~~~L~~~~~--~~tiii~tH~~~~i~ 243 (285)
T PRK14254 209 SALDPVATSKI-EDLIEELAE--EYTVVIVTHNMQQAA 243 (285)
T ss_pred CCCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 99999877766 456666654 379999999998764
No 247
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.64 E-value=5.5e-16 Score=187.29 Aligned_cols=146 Identities=16% Similarity=0.149 Sum_probs=104.7
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcccccccccc---
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASSA--- 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~~--- 830 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+...
T Consensus 7 ~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~ 86 (491)
T PRK10982 7 SFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL 86 (491)
T ss_pred EeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc
Confidence 34566789999999999999999999999999999999865310 111124444321
Q ss_pred ccchHH------------------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 831 ELHVLD------------------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 831 ~~~~~~------------------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.+++.+ .++..++..........++++++++...+++. +.+|+++||||||+|+|
T Consensus 87 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD 166 (491)
T PRK10982 87 QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLT 166 (491)
T ss_pred CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCC
Confidence 112222 23344444444445567788888887777765 68999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
+.....+. .++..+.+ .|.++|++||+.+.+. +++
T Consensus 167 ~~~~~~l~-~~l~~l~~-~g~tvii~tH~~~~~~~~~d 202 (491)
T PRK10982 167 EKEVNHLF-TIIRKLKE-RGCGIVYISHKMEEIFQLCD 202 (491)
T ss_pred HHHHHHHH-HHHHHHHh-CCCEEEEEecCHHHHHHhCC
Confidence 98877774 55666665 5899999999987654 454
No 248
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.64 E-value=5.1e-16 Score=171.86 Aligned_cols=140 Identities=17% Similarity=0.096 Sum_probs=96.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc-----c--cccccc---ccccchHHH----------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV-----G--SFVPAS---SAELHVLDG---------- 837 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~-----g--~~vp~~---~~~~~~~~~---------- 837 (1083)
...++++++|++.+|++++|+|||||||||||++|+++...... | .+++.. ...+++.+.
T Consensus 36 ~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~tv~enl~~~~~~~~~ 115 (264)
T PRK13546 36 TFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLTGIENIEFKMLCMGF 115 (264)
T ss_pred ceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEeEEecccCCCCCCcHHHHHHHHHHHcCC
Confidence 45688999999999999999999999999999999876422110 0 011111 011122221
Q ss_pred -----------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 001405 838 -----------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK 905 (1083)
Q Consensus 838 -----------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~ 905 (1083)
++..++..+.+......+++++++...+++. +.+|+++|||||++|+|+.....+.. ++..+.+ .|
T Consensus 116 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~-~L~~~~~-~g 193 (264)
T PRK13546 116 KRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLD-KIYEFKE-QN 193 (264)
T ss_pred CHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHH-HHHHHHH-CC
Confidence 2333444444555566778777776655554 68999999999999999987777754 4555555 58
Q ss_pred cEEEEEeCchHHHH
Q 001405 906 CMVLFVTHYPKIAD 919 (1083)
Q Consensus 906 ~~vl~~TH~~~l~~ 919 (1083)
.++|++||+.+.+.
T Consensus 194 ~tiIiisH~~~~i~ 207 (264)
T PRK13546 194 KTIFFVSHNLGQVR 207 (264)
T ss_pred CEEEEEcCCHHHHH
Confidence 99999999987653
No 249
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=172.20 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=105.3
Q ss_pred CccceeecCCCcceeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------
Q 001405 748 FVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------- 818 (1083)
Q Consensus 748 ~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------- 818 (1083)
|+-|.+.... .|.+.+.. ..+++..++++++|++.+|++++|+|||||||||||++|+++...
T Consensus 35 ~~~~~~~~~~---~l~i~nl~-----~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~ 106 (305)
T PRK14264 35 WTDYEFDGDA---KLSVEDLD-----VYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGS 106 (305)
T ss_pred ccccccCCCc---eEEEEEEE-----EEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceE
Confidence 4555554332 35554432 223456799999999999999999999999999999999876420
Q ss_pred ------------------hhccccccccccc--cchHHHHH----------------------------------hhCCc
Q 001405 819 ------------------AQVGSFVPASSAE--LHVLDGIY----------------------------------TRMGA 844 (1083)
Q Consensus 819 ------------------aq~g~~vp~~~~~--~~~~~~i~----------------------------------~~~~~ 844 (1083)
.+...|+|+.... .++.+.+. ..++.
T Consensus 107 I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 186 (305)
T PRK14264 107 VELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL 186 (305)
T ss_pred EEECCEEcccccccHHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC
Confidence 0112244443210 12222221 11222
Q ss_pred c----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 845 S----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 845 ~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
. +.+......+++++++...+++. +.+|+|+|||||++|||+.....+ ..++..+.+ +.++|++||+++.+.
T Consensus 187 ~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~i~ 263 (305)
T PRK14264 187 WDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKI-EDLIEELAE--EYTVVVVTHNMQQAA 263 (305)
T ss_pred chhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHH-HHHHHHHhc--CCEEEEEEcCHHHHH
Confidence 1 12223345677778777666665 689999999999999999877777 455555655 479999999998753
No 250
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.3e-15 Score=167.55 Aligned_cols=141 Identities=15% Similarity=0.152 Sum_probs=95.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------------------------hccccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------------------------QVGSFVPASS 829 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------------------------q~g~~vp~~~ 829 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++.-.. +...|+|...
T Consensus 13 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~ 92 (249)
T PRK14253 13 YGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKP 92 (249)
T ss_pred ECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCC
Confidence 34567899999999999999999999999999999998764310 0112344332
Q ss_pred cc--cchHHHHH----------------------hhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 830 AE--LHVLDGIY----------------------TRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 830 ~~--~~~~~~i~----------------------~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
.. .++.+.+. ..++.. +.+......+++++++...+++. +.+|+|+|||||
T Consensus 93 ~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 172 (249)
T PRK14253 93 NPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEP 172 (249)
T ss_pred CcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11 12222221 111211 11222334677777777666665 688999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++|+|+.....+ ..++..+.+ +.+||++||+.+...
T Consensus 173 ~~~LD~~~~~~l-~~~l~~~~~--~~tii~~sh~~~~~~ 208 (249)
T PRK14253 173 TSALDPIATHKI-EELMEELKK--NYTIVIVTHSMQQAR 208 (249)
T ss_pred CccCCHHHHHHH-HHHHHHHhc--CCeEEEEecCHHHHH
Confidence 999999877666 456666654 589999999988654
No 251
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.4e-15 Score=167.71 Aligned_cols=141 Identities=16% Similarity=0.219 Sum_probs=96.4
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||||+|+++... . +...|+|+.
T Consensus 14 ~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (251)
T PRK14270 14 YGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQK 93 (251)
T ss_pred ECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecC
Confidence 3455789999999999999999999999999999999986321 0 111234433
Q ss_pred cc--ccchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+ +..++.. +........+++++++...+++. +.+|+++||||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 173 (251)
T PRK14270 94 PNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE 173 (251)
T ss_pred CCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 11 11222222 2222221 12233445677777776666655 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+.+...
T Consensus 174 P~~~LD~~~~~~l~-~~L~~~~~--~~tiiivsH~~~~~~ 210 (251)
T PRK14270 174 PTSALDPISTLKIE-DLMVELKK--EYTIVIVTHNMQQAS 210 (251)
T ss_pred CcccCCHHHHHHHH-HHHHHHHh--CCeEEEEEcCHHHHH
Confidence 99999998887774 55555554 479999999998653
No 252
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1.1e-15 Score=168.67 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=96.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||+|+|+++.-. . +...|+|+.
T Consensus 14 ~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~ 93 (253)
T PRK14267 14 YGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQY 93 (253)
T ss_pred eCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecC
Confidence 3456789999999999999999999999999999999876421 0 001233333
Q ss_pred cc---ccchHHHH-----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 829 SA---ELHVLDGI-----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 829 ~~---~~~~~~~i-----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
.. .+++.+.+ +..++.. +........+++++++...+++. +.+|+++||
T Consensus 94 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 94 PNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 11 12222222 2222221 11233345677777777666665 689999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||++|+|+.....+. .++..+.+ +.++|++||+++...
T Consensus 174 DEP~~~LD~~~~~~l~-~~l~~~~~--~~tiii~sH~~~~~~ 212 (253)
T PRK14267 174 DEPTANIDPVGTAKIE-ELLFELKK--EYTIVLVTHSPAQAA 212 (253)
T ss_pred cCCCccCCHHHHHHHH-HHHHHHhh--CCEEEEEECCHHHHH
Confidence 9999999998777774 45555544 589999999998653
No 253
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=7.3e-16 Score=154.99 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=95.6
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-------------------ccccc---cccccccch
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-------------------VGSFV---PASSAELHV 834 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-------------------~g~~v---p~~~~~~~~ 834 (1083)
++..++.+++|++.+|+++.|+||||+|||||||+|+++.-... .-.|+ |.-...++.
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eLTa 92 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhhccccccchhhH
Confidence 56789999999999999999999999999999999997642111 00011 111122222
Q ss_pred HHH------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 001405 835 LDG------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYA 895 (1083)
Q Consensus 835 ~~~------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~ 895 (1083)
+++ .+..+|..+........++.+++++..+.+. ++.++|+|||||++++|.. +.++...
T Consensus 93 ~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~-g~a~l~~ 171 (209)
T COG4133 93 LENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKE-GVALLTA 171 (209)
T ss_pred HHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHH-HHHHHHH
Confidence 222 2334455444445566778888888888876 6889999999999999975 5555455
Q ss_pred HHHHHHhCCCcEEEEEeCch
Q 001405 896 TLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 896 il~~l~~~~~~~vl~~TH~~ 915 (1083)
++..-.. .|-.||.+||..
T Consensus 172 l~~~H~~-~GGiVllttHq~ 190 (209)
T COG4133 172 LMAAHAA-QGGIVLLTTHQP 190 (209)
T ss_pred HHHHHhc-CCCEEEEecCCc
Confidence 5543334 578899999975
No 254
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.64 E-value=1e-15 Score=169.54 Aligned_cols=145 Identities=14% Similarity=0.158 Sum_probs=98.4
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhccccccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPA 827 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~ 827 (1083)
.+++..+++|++|++.+|++++|+||||||||||+|+|+++... .+...|+|.
T Consensus 17 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q 96 (261)
T PRK14263 17 FYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQ 96 (261)
T ss_pred EeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEec
Confidence 34566789999999999999999999999999999999876421 011123433
Q ss_pred ccc--ccchHHH--------------------HHhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 828 SSA--ELHVLDG--------------------IYTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 828 ~~~--~~~~~~~--------------------i~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
... ..++.+. ++..++... ........+++++++...+++. +.+|+++|||||
T Consensus 97 ~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 176 (261)
T PRK14263 97 QPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEP 176 (261)
T ss_pred CCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 311 1222222 222333321 1122345677788777666655 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
++|+|+.....+. .++..+.+ +.++|++||+++.. ++++
T Consensus 177 tsgLD~~~~~~l~-~~l~~~~~--~~tii~isH~~~~i~~~~d 216 (261)
T PRK14263 177 CSALDPIATRRVE-ELMVELKK--DYTIALVTHNMQQAIRVAD 216 (261)
T ss_pred CccCCHHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHHHhCC
Confidence 9999998777774 55555543 68999999999864 3443
No 255
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=8.4e-16 Score=167.76 Aligned_cols=140 Identities=17% Similarity=0.131 Sum_probs=94.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc--ccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA--ELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~--~~~~~ 835 (1083)
...+++|++|++.+|++++|+||||||||||||+|+++... .+...|+|.... ..++.
T Consensus 13 ~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~ 92 (236)
T cd03253 13 GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIG 92 (236)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHH
Confidence 35688999999999999999999999999999999876421 111123443311 11222
Q ss_pred HHH---------------HhhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGI---------------YTRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i---------------~~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+.+ ....+..+.+ ......+++++++...+++. +.+|+++|||||++|+|+..
T Consensus 93 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 93 YNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 222 1111221111 11234577777776666665 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
...+. .++..+.+ |.++|++||+.+....
T Consensus 173 ~~~l~-~~l~~~~~--~~tiii~sh~~~~~~~ 201 (236)
T cd03253 173 EREIQ-AALRDVSK--GRTTIVIAHRLSTIVN 201 (236)
T ss_pred HHHHH-HHHHHhcC--CCEEEEEcCCHHHHHh
Confidence 77774 45555543 7899999999987754
No 256
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.64 E-value=9.5e-16 Score=168.76 Aligned_cols=137 Identities=17% Similarity=0.126 Sum_probs=98.7
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--hc--------------c-----------------cccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--QV--------------G-----------------SFVP 826 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--q~--------------g-----------------~~vp 826 (1083)
.+++|+++ +.+|++++|+||||||||||||+|+++.-.. ++ | .+++
T Consensus 15 ~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 58889995 8999999999999999999999998653100 00 0 1111
Q ss_pred cccccc------------------chHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 827 ASSAEL------------------HVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 827 ~~~~~~------------------~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
...... .....++.++|..+........+++++++...+++. +.+|+++|+|||++|+|+.
T Consensus 94 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~ 173 (255)
T cd03236 94 QYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIK 173 (255)
T ss_pred chhccCchHHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHH
Confidence 110000 112335666777666666777888888887776665 6889999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+. .++..+.+ .++++|++||+++...
T Consensus 174 ~~~~l~-~~l~~l~~-~~~tIIiiSHd~~~~~ 203 (255)
T cd03236 174 QRLNAA-RLIRELAE-DDNYVLVVEHDLAVLD 203 (255)
T ss_pred HHHHHH-HHHHHHHh-cCCEEEEEECCHHHHH
Confidence 877775 55556665 5899999999998765
No 257
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.64 E-value=4.3e-16 Score=188.23 Aligned_cols=143 Identities=17% Similarity=0.197 Sum_probs=102.8
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcccccccccc-
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------------AQVGSFVPASSA- 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------------aq~g~~vp~~~~- 830 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|+++... .++ .|+++...
T Consensus 269 ~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i-~~v~q~~~~ 347 (490)
T PRK10938 269 SYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHI-GYVSSSLHL 347 (490)
T ss_pred EECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhc-eEECHHHHh
Confidence 34556799999999999999999999999999999999875311 011 23332210
Q ss_pred --c--cc-------------------------hHHHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 831 --E--LH-------------------------VLDGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 831 --~--~~-------------------------~~~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
. .. .+..++..++..+ ......+++++++++...+++. +.+|+++||||
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDE 427 (490)
T PRK10938 348 DYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDE 427 (490)
T ss_pred hcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 0 00 1123445566654 4555667888888888777766 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||+|+|+.....+. .++..+.+..+++||++||+.+++.
T Consensus 428 Pt~gLD~~~~~~l~-~~L~~l~~~~~~tviivsHd~~~~~ 466 (490)
T PRK10938 428 PLQGLDPLNRQLVR-RFVDVLISEGETQLLFVSHHAEDAP 466 (490)
T ss_pred ccccCCHHHHHHHH-HHHHHHHhcCCcEEEEEecchhhhh
Confidence 99999998888885 5555565533467999999998764
No 258
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.64 E-value=6.6e-16 Score=165.80 Aligned_cols=139 Identities=14% Similarity=0.070 Sum_probs=93.0
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccc-------cccc--c---ccccchHHHH---------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGS-------FVPA--S---SAELHVLDGI--------- 838 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~-------~vp~--~---~~~~~~~~~i--------- 838 (1083)
.|++||+|++++|++++|+||||||||||+|+|+++.... -|. .++. . ...+++.+.+
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~-sG~i~~~~~~~~~~~~~~~l~~~ltv~enl~~~~~~~~~ 79 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPD-EGDFIGLRGDALPLGANSFILPGLTGEENARMMASLYGL 79 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCC-CCCEEEecCceeccccccccCCcCcHHHHHHHHHHHcCC
Confidence 3789999999999999999999999999999998764211 111 0010 0 0112222222
Q ss_pred ---------HhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 001405 839 ---------YTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMV 908 (1083)
Q Consensus 839 ---------~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~v 908 (1083)
...++..+......+.++++|++...+++. +.+|+++|||||++++|+.....+...+.+.+. +.++
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~---~~~i 156 (213)
T PRK15177 80 DGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQ---QKGL 156 (213)
T ss_pred CHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhh---CCcE
Confidence 111222222333456777788777665555 689999999999999999888877655555543 3468
Q ss_pred EEEeCchHHHH-Hhh
Q 001405 909 LFVTHYPKIAD-IKT 922 (1083)
Q Consensus 909 l~~TH~~~l~~-l~~ 922 (1083)
|++||+++... +++
T Consensus 157 i~vsH~~~~~~~~~d 171 (213)
T PRK15177 157 IVLTHNPRLIKEHCH 171 (213)
T ss_pred EEEECCHHHHHHhcC
Confidence 99999998764 443
No 259
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.64 E-value=5.8e-16 Score=187.53 Aligned_cols=147 Identities=12% Similarity=0.119 Sum_probs=104.5
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----h-------------------hcccccccccc-
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----A-------------------QVGSFVPASSA- 830 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----a-------------------q~g~~vp~~~~- 830 (1083)
.|++..+++|++|++.+|++++|+||||||||||||+|+++... . +.-.|+|+...
T Consensus 10 ~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~ 89 (500)
T TIGR02633 10 TFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL 89 (500)
T ss_pred EeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc
Confidence 34566789999999999999999999999999999999876421 0 11124444311
Q ss_pred --ccchHH-------------------------HHHhhCCcchhH-HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 831 --ELHVLD-------------------------GIYTRMGASDSI-QQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 831 --~~~~~~-------------------------~i~~~~~~~d~~-~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
.+++.+ .++..++..+.. .....++++++++...+++. +.+|+++||||||
T Consensus 90 ~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt 169 (500)
T TIGR02633 90 VPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPS 169 (500)
T ss_pred CCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCC
Confidence 112222 233344443322 23467889998888877765 6889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+|+|+.....+. .++..+.+ .|.+||++||+.+.+. ++++
T Consensus 170 ~~LD~~~~~~l~-~~l~~l~~-~g~tviiitHd~~~~~~~~d~ 210 (500)
T TIGR02633 170 SSLTEKETEILL-DIIRDLKA-HGVACVYISHKLNEVKAVCDT 210 (500)
T ss_pred CCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCcHHHHHHhCCE
Confidence 999998887774 56666665 6899999999987664 5553
No 260
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=1.3e-15 Score=151.02 Aligned_cols=159 Identities=16% Similarity=0.191 Sum_probs=116.4
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------Hhhccccccccccc-----
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------MAQVGSFVPASSAE----- 831 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------laq~g~~vp~~~~~----- 831 (1083)
.+.||..-|+++||++..+|+++.|+|.+|||||||||||..+.. ....|..+|++...
T Consensus 13 HK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~R 92 (256)
T COG4598 13 HKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLR 92 (256)
T ss_pred HhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHH
Confidence 356788889999999999999999999999999999999975431 11223333333110
Q ss_pred ---------------cch----------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCc
Q 001405 832 ---------------LHV----------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQS 873 (1083)
Q Consensus 832 ---------------~~~----------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~s 873 (1083)
+++ ...++.++|+.+........++++.++.+.|++. +.+|.
T Consensus 93 s~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARaLameP~ 172 (256)
T COG4598 93 TRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARALAMEPE 172 (256)
T ss_pred HHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHHHhcCCc
Confidence 111 1234566777777766777888888888888887 68999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEE
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYL 936 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~ 936 (1083)
++++||||+.|||+-.-.+ ..++..|.+ .|.|.+++||.+.++. +....|..+|-...
T Consensus 173 vmLFDEPTSALDPElVgEV-Lkv~~~LAe-EgrTMv~VTHEM~FAR---~Vss~v~fLh~G~i 230 (256)
T COG4598 173 VMLFDEPTSALDPELVGEV-LKVMQDLAE-EGRTMVVVTHEMGFAR---DVSSHVIFLHQGKI 230 (256)
T ss_pred eEeecCCcccCCHHHHHHH-HHHHHHHHH-hCCeEEEEeeehhHHH---hhhhheEEeeccee
Confidence 9999999999999876666 456677877 6999999999998875 22233555554443
No 261
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=9.7e-16 Score=169.32 Aligned_cols=145 Identities=17% Similarity=0.218 Sum_probs=99.3
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------------------------hcccccccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------------------------QVGSFVPAS 828 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------------------------q~g~~vp~~ 828 (1083)
.+++..+++|++|++.+|++++|+|||||||||||++|+++.... +...|+|..
T Consensus 19 ~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~ 98 (257)
T PRK14246 19 YINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQ 98 (257)
T ss_pred ecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccC
Confidence 356778999999999999999999999999999999998653210 111234333
Q ss_pred cc---ccchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SA---ELHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~---~~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
.. .+++.+.+ +..++.. +........+++++++...+++. +.+|+++|||
T Consensus 99 ~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllD 178 (257)
T PRK14246 99 PNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMD 178 (257)
T ss_pred CccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 11 11222222 2223332 12233445677777777666665 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhh
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKT 922 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~ 922 (1083)
||++|+|+.....+ ..++..+.+ ++++|++||+.+.+ .+++
T Consensus 179 EPt~~LD~~~~~~l-~~~l~~~~~--~~tiilvsh~~~~~~~~~d 220 (257)
T PRK14246 179 EPTSMIDIVNSQAI-EKLITELKN--EIAIVIVSHNPQQVARVAD 220 (257)
T ss_pred CCCccCCHHHHHHH-HHHHHHHhc--CcEEEEEECCHHHHHHhCC
Confidence 99999999877776 455555643 68999999999876 3443
No 262
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=1.2e-15 Score=173.94 Aligned_cols=143 Identities=15% Similarity=0.129 Sum_probs=103.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcccccccccc-----
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------------AQVGSFVPASSA----- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------------aq~g~~vp~~~~----- 830 (1083)
..+++||+|++.+|++++|+|+||||||||+++|+++... .....||++...
T Consensus 28 ~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p 107 (327)
T PRK11308 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNP 107 (327)
T ss_pred eeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCC
Confidence 4689999999999999999999999999999999865210 011234444310
Q ss_pred ccch----------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 ELHV----------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 ~~~~----------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.+.+ +..++..+|.. +........++++|++...|+++ +.+|+|||+||||+|||+
T Consensus 108 ~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~ 187 (327)
T PRK11308 108 RKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDV 187 (327)
T ss_pred ccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCH
Confidence 0111 12345556664 23455567888999888777776 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
.....+.. ++..+.++.|.++|++|||+.++. +++
T Consensus 188 ~~~~~i~~-lL~~l~~~~g~til~iTHdl~~~~~~ad 223 (327)
T PRK11308 188 SVQAQVLN-LMMDLQQELGLSYVFISHDLSVVEHIAD 223 (327)
T ss_pred HHHHHHHH-HHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 88887754 555555546899999999998875 454
No 263
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=6.5e-16 Score=155.74 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=113.0
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------------HHhhcc--
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------------IMAQVG-- 822 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------------~laq~g-- 822 (1083)
+.+.++.+.|++|+|+++++|.++.|+||||+||||||-+++.+. ++.|-.
T Consensus 7 v~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i 86 (252)
T COG4604 7 VSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHI 86 (252)
T ss_pred hhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchh
Confidence 345678899999999999999999999999999999999998543 222211
Q ss_pred ------------ccccccccccch-----HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 823 ------------SFVPASSAELHV-----LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 823 ------------~~vp~~~~~~~~-----~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
+-+|-...+++- +++.+.-+.+.+--.+.+..++++.++++.++.. +.+.+.|+||||.++|
T Consensus 87 ~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNL 166 (252)
T COG4604 87 NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNL 166 (252)
T ss_pred hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCccccc
Confidence 112333333332 3344555666666666777888888888887765 6788999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|.....+++ .+++.+.++.|.||++|-||.++|.
T Consensus 167 DmkHsv~iM-k~Lrrla~el~KtiviVlHDINfAS 200 (252)
T COG4604 167 DMKHSVQIM-KILRRLADELGKTIVVVLHDINFAS 200 (252)
T ss_pred chHHHHHHH-HHHHHHHHHhCCeEEEEEecccHHH
Confidence 999999995 5677777778999999999999875
No 264
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.3e-15 Score=167.86 Aligned_cols=141 Identities=15% Similarity=0.194 Sum_probs=95.7
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-----h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-----A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-----a--------------------q~g~~vp~~ 828 (1083)
++.+.+++|++|++.+|++++|+||||||||||||+|+++.. . . +.-.|+|+.
T Consensus 15 ~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 94 (252)
T PRK14255 15 YGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQ 94 (252)
T ss_pred ECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECC
Confidence 445678999999999999999999999999999999987531 0 0 011234433
Q ss_pred ccc--cchHHHHH----------------------hhCCc----chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGIY----------------------TRMGA----SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i~----------------------~~~~~----~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+. ..++. .+........+++++++...+++. +.+|+++||||
T Consensus 95 ~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 174 (252)
T PRK14255 95 PNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDE 174 (252)
T ss_pred CccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 111 12222221 11111 111223345677777777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+.+...
T Consensus 175 Pt~~LD~~~~~~l~-~~l~~~~~--~~tii~vsH~~~~~~ 211 (252)
T PRK14255 175 PTSALDPISSTQIE-NMLLELRD--QYTIILVTHSMHQAS 211 (252)
T ss_pred CCccCCHHHHHHHH-HHHHHHHh--CCEEEEEECCHHHHH
Confidence 99999998888774 45555554 479999999988753
No 265
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=167.62 Aligned_cols=141 Identities=14% Similarity=0.173 Sum_probs=95.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++.-. . +...|+++.
T Consensus 16 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 95 (253)
T PRK14261 16 YGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQR 95 (253)
T ss_pred ECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecC
Confidence 4456799999999999999999999999999999999875311 0 011233333
Q ss_pred ccc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+ +..++.. +.+......+++++++...+++. +.+|+++||||
T Consensus 96 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 175 (253)
T PRK14261 96 PNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDE 175 (253)
T ss_pred CccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111 1222221 1122221 11223345577777776666655 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+ ..++..+.+ +.++|++||+.+...
T Consensus 176 P~~gLD~~~~~~l-~~~l~~~~~--~~tvii~sh~~~~~~ 212 (253)
T PRK14261 176 PCSALDPIATAKI-EDLIEDLKK--EYTVIIVTHNMQQAA 212 (253)
T ss_pred CcccCCHHHHHHH-HHHHHHHhh--CceEEEEEcCHHHHH
Confidence 9999999887777 455555654 579999999987663
No 266
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.63 E-value=8e-16 Score=154.69 Aligned_cols=142 Identities=17% Similarity=0.104 Sum_probs=107.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcc---------------ccccccccccch---------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVG---------------SFVPASSAELHV--------- 834 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g---------------~~vp~~~~~~~~--------- 834 (1083)
..++.|+|+++.+|+.++++||+||||||||+.+++++-.++.- ..|.++.+-+++
T Consensus 18 ~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~~~LlPWl~~~dNvaf 97 (259)
T COG4525 18 RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQNEALLPWLNVIDNVAF 97 (259)
T ss_pred hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEeccCccchhhHHHHHHHH
Confidence 34889999999999999999999999999999999876443211 012222222222
Q ss_pred ---------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001405 835 ---------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLD 898 (1083)
Q Consensus 835 ---------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~ 898 (1083)
..+++..+|..+.-.+.+-.++++|++..-|+++ +.+|.+++||||+..+|...+..+-..+++
T Consensus 98 gL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLld 177 (259)
T COG4525 98 GLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLD 177 (259)
T ss_pred HHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHH
Confidence 1234455566655556666788999998888877 689999999999999999998888666666
Q ss_pred HHHhCCCcEEEEEeCchHHHHHh
Q 001405 899 YLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 899 ~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.... .|..++++||+.+.+-+.
T Consensus 178 lw~~-tgk~~lliTH~ieEAlfl 199 (259)
T COG4525 178 LWQE-TGKQVLLITHDIEEALFL 199 (259)
T ss_pred HHHH-hCCeEEEEeccHHHHHhh
Confidence 6555 799999999999988654
No 267
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.63 E-value=9.8e-16 Score=152.66 Aligned_cols=138 Identities=21% Similarity=0.245 Sum_probs=102.0
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccc---------cccc------------cccch--------
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFV---------PASS------------AELHV-------- 834 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~v---------p~~~------------~~~~~-------- 834 (1083)
.+++++..|++++|+||+||||||||+.|++....++....+ |++. +.+++
T Consensus 17 ~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl 96 (231)
T COG3840 17 RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGL 96 (231)
T ss_pred EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccC
Confidence 456677899999999999999999999999876544322211 2111 11111
Q ss_pred -------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 835 -------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 835 -------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
++.+..++|..+...+-..+++++.++...+++. ..+.++++||||++.|||.-+..+. +++..+
T Consensus 97 ~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl-~Lv~~l 175 (231)
T COG3840 97 SPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEML-ALVSQL 175 (231)
T ss_pred CcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHH-HHHHHH
Confidence 2345667777777777777888888887777776 5788999999999999999888884 566667
Q ss_pred HhCCCcEEEEEeCchHHHH-Hhh
Q 001405 901 LEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
..+++.|++++||.++-+. +++
T Consensus 176 ~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 176 CDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred HHhhCCEEEEEeCCHHHHHHhhh
Confidence 7778999999999987654 443
No 268
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.5e-15 Score=167.42 Aligned_cols=141 Identities=16% Similarity=0.193 Sum_probs=95.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.... +.-.|+|+.
T Consensus 14 ~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~ 93 (251)
T PRK14249 14 YHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93 (251)
T ss_pred ECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecC
Confidence 34456889999999999999999999999999999998764221 111233333
Q ss_pred ccc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+++ +..++.. +........+++++++...+++. +.+|+++||||
T Consensus 94 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 173 (251)
T PRK14249 94 PNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDE 173 (251)
T ss_pred CccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 111 1222222 1112211 11223344567777776666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+. .+.+||++||+.+...
T Consensus 174 Pt~~LD~~~~~~l~-~~l~~~~--~~~tilivsh~~~~~~ 210 (251)
T PRK14249 174 PCSALDPVSTMRIE-ELMQELK--QNYTIAIVTHNMQQAA 210 (251)
T ss_pred CCccCCHHHHHHHH-HHHHHHh--cCCEEEEEeCCHHHHH
Confidence 99999998887774 4555553 3789999999988764
No 269
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.63 E-value=8e-16 Score=186.27 Aligned_cols=145 Identities=12% Similarity=0.079 Sum_probs=103.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhcccccccccc---c
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASSA---E 831 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~~---~ 831 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++... .+.-+|+|+... .
T Consensus 14 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~ 93 (501)
T PRK11288 14 FPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHLVPE 93 (501)
T ss_pred ECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhccCC
Confidence 4556789999999999999999999999999999999865311 111124443311 1
Q ss_pred cchHHH------------------------HHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 832 LHVLDG------------------------IYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 832 ~~~~~~------------------------i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
+++.+. ++..+|..+......+++++++++...+++. +.+|+++||||||+|+|+
T Consensus 94 ~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 94 MTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173 (501)
T ss_pred CCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence 122222 3344444433445567788888887777765 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
.....+. .++..+.+ .|.+||++||+.+.+. +++
T Consensus 174 ~~~~~l~-~~l~~~~~-~g~tiiiitHd~~~~~~~~d 208 (501)
T PRK11288 174 REIEQLF-RVIRELRA-EGRVILYVSHRMEEIFALCD 208 (501)
T ss_pred HHHHHHH-HHHHHHHh-CCCEEEEEeCCHHHHHHhCC
Confidence 8887774 55555665 5899999999987763 444
No 270
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=7.6e-16 Score=164.01 Aligned_cols=142 Identities=13% Similarity=0.072 Sum_probs=91.3
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--hhcc--------------------ccccccc---ccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--AQVG--------------------SFVPASS---AEL 832 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--aq~g--------------------~~vp~~~---~~~ 832 (1083)
++.++++++|++.+|++++|+|||||||||||++|+++... ...| .|+|... ..+
T Consensus 19 ~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~ 98 (202)
T cd03233 19 KIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL 98 (202)
T ss_pred CceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhcceEEEEecccccCCCC
Confidence 45688899999999999999999999999999999887431 1111 1222221 112
Q ss_pred chHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 001405 833 HVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911 (1083)
Q Consensus 833 ~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~ 911 (1083)
++.+.+...... ........+++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+.++.+.++|++
T Consensus 99 tv~~~l~~~~~~--~~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~-~~~l~~~~~~~~~t~ii~ 175 (202)
T cd03233 99 TVRETLDFALRC--KGNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEI-LKCIRTMADVLKTTTFVS 175 (202)
T ss_pred cHHHHHhhhhhh--ccccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHH-HHHHHHHHHhCCCEEEEE
Confidence 233333211000 0223445677777776655554 689999999999999999877777 455556655335666665
Q ss_pred e-CchH-HHHHhh
Q 001405 912 T-HYPK-IADIKT 922 (1083)
Q Consensus 912 T-H~~~-l~~l~~ 922 (1083)
| |+.+ +.++++
T Consensus 176 ~~h~~~~~~~~~d 188 (202)
T cd03233 176 LYQASDEIYDLFD 188 (202)
T ss_pred EcCCHHHHHHhCC
Confidence 5 5544 444443
No 271
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.63 E-value=8e-16 Score=175.55 Aligned_cols=143 Identities=15% Similarity=0.080 Sum_probs=102.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hcccccccccc-
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFVPASSA- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~vp~~~~- 830 (1083)
..+++||||++.+|++++|+|+||||||||+++|+++.-.. +.-.||+++..
T Consensus 29 ~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 108 (330)
T PRK09473 29 VTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMT 108 (330)
T ss_pred EEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCchh
Confidence 46889999999999999999999999999999998764210 01134444321
Q ss_pred ----ccchH----------------------HHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 831 ----ELHVL----------------------DGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 831 ----~~~~~----------------------~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
.+.+. ..++..+|..+ .+......++++|++...|++. +.+|+|||+|||
T Consensus 109 ~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEP 188 (330)
T PRK09473 109 SLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEP 188 (330)
T ss_pred hcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 11111 12334444432 2233556788898887777766 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
|+|||+.....+. .++..+.++.|.++||+|||++++. +++
T Consensus 189 ts~LD~~~~~~i~-~lL~~l~~~~g~til~iTHdl~~~~~~~D 230 (330)
T PRK09473 189 TTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICD 230 (330)
T ss_pred CccCCHHHHHHHH-HHHHHHHHHcCCEEEEEECCHHHHHHhCC
Confidence 9999998888875 4555565545899999999998774 544
No 272
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=5.1e-15 Score=153.59 Aligned_cols=141 Identities=23% Similarity=0.279 Sum_probs=102.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH----------------------HHhhccccc----ccccccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG----------------------IMAQVGSFV----PASSAEL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~----------------------~laq~g~~v----p~~~~~~ 832 (1083)
+.|+++|+|++++|++.+|.||||||||||.+.|++.- --|..|.|+ |.+-.-+
T Consensus 17 keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV 96 (251)
T COG0396 17 KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIPGV 96 (251)
T ss_pred hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCCCe
Confidence 59999999999999999999999999999999997431 135556553 3321111
Q ss_pred ch------------------------HHHHHhhCCcch-hHHhch-hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 833 HV------------------------LDGIYTRMGASD-SIQQGR-STFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 833 ~~------------------------~~~i~~~~~~~d-~~~~~~-stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.. .......++... .+.+.. -.|+++.+....+++. +.+|+++|||||-+|+|
T Consensus 97 ~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 97 TNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred eHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 11 112233444433 222222 2578888888888876 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
. ++..+....++.+.+ .+..+|++|||.++.+..
T Consensus 177 I-dalk~V~~~i~~lr~-~~~~~liITHy~rll~~i 210 (251)
T COG0396 177 I-DALKIVAEGINALRE-EGRGVLIITHYQRLLDYI 210 (251)
T ss_pred H-HHHHHHHHHHHHHhc-CCCeEEEEecHHHHHhhc
Confidence 7 666666777888887 699999999999998754
No 273
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.6e-15 Score=166.19 Aligned_cols=141 Identities=15% Similarity=0.195 Sum_probs=95.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----hcc-----------------------cccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----QVG-----------------------SFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----q~g-----------------------~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+|+||||||||||+|+++.-.. ..| .|+|..
T Consensus 17 ~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 96 (259)
T PRK14260 17 YNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQR 96 (259)
T ss_pred ECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecc
Confidence 34556899999999999999999999999999999999863210 011 223332
Q ss_pred cc--ccchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+ +..++.. +........+++++++...+++. +.+|+++||||
T Consensus 97 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDE 176 (259)
T PRK14260 97 PNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176 (259)
T ss_pred cccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11 11222222 1222221 12223335677777777666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++...
T Consensus 177 Pt~~LD~~~~~~l~-~~l~~~~~--~~tiii~tH~~~~i~ 213 (259)
T PRK14260 177 PCSALDPIATMKVE-ELIHSLRS--ELTIAIVTHNMQQAT 213 (259)
T ss_pred CCccCCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 99999998777774 55555544 589999999997764
No 274
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.5e-15 Score=166.51 Aligned_cols=142 Identities=14% Similarity=0.194 Sum_probs=95.4
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hccccccccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFVPASS 829 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~vp~~~ 829 (1083)
++..+++|++|++.+|++++|+|||||||||||++|+++.... +...|+|...
T Consensus 18 ~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~ 97 (261)
T PRK14258 18 DTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKP 97 (261)
T ss_pred CCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCC
Confidence 4456899999999999999999999999999999998764321 0012233221
Q ss_pred c--ccchHHHH----------------------HhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 830 A--ELHVLDGI----------------------YTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 830 ~--~~~~~~~i----------------------~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
. ..++.+.+ +..++..+ ........+++++++...+++. +.+|+++|||||
T Consensus 98 ~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP 177 (261)
T PRK14258 98 NLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEP 177 (261)
T ss_pred ccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 1 11222222 11222211 1223335677777777666665 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++|+|+.....+. .++..+....+.++|++||+++.+.
T Consensus 178 ~~~LD~~~~~~l~-~~l~~l~~~~~~tiiivsH~~~~i~ 215 (261)
T PRK14258 178 CFGLDPIASMKVE-SLIQSLRLRSELTMVIVSHNLHQVS 215 (261)
T ss_pred CccCCHHHHHHHH-HHHHHHHHhCCCEEEEEECCHHHHH
Confidence 9999998777764 4455554335889999999998654
No 275
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.3e-15 Score=167.77 Aligned_cols=141 Identities=16% Similarity=0.206 Sum_probs=95.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----hhc-----------------------ccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----AQV-----------------------GSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----aq~-----------------------g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+|+||||||||||+|+++... ... ..|+|++
T Consensus 34 ~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~ 113 (271)
T PRK14238 34 YGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQK 113 (271)
T ss_pred ECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecC
Confidence 3456789999999999999999999999999999999986420 011 1233333
Q ss_pred ccc--cchHHHHH----------------------hhCC----cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGIY----------------------TRMG----ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i~----------------------~~~~----~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+. ..++ ..+.+......+++++++...+++. +.+|+++||||
T Consensus 114 ~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDE 193 (271)
T PRK14238 114 PNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDE 193 (271)
T ss_pred CccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 111 12223321 0111 1111122334567777776666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.++|++||+++...
T Consensus 194 Pt~~LD~~~~~~l~-~~l~~~~~--~~tiiivsH~~~~i~ 230 (271)
T PRK14238 194 PTSALDPISTLKVE-ELVQELKK--DYSIIIVTHNMQQAA 230 (271)
T ss_pred CCCcCCHHHHHHHH-HHHHHHHc--CCEEEEEEcCHHHHH
Confidence 99999998887775 45555554 689999999998753
No 276
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2e-15 Score=168.60 Aligned_cols=142 Identities=14% Similarity=0.205 Sum_probs=97.8
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------------hhcccccccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------------AQVGSFVPAS 828 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------------aq~g~~vp~~ 828 (1083)
.++++.+++|++|++.+|++++|+||||+|||||||+|+++... .....|+|+.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~ 109 (276)
T PRK14271 30 GFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQR 109 (276)
T ss_pred EECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccC
Confidence 34567899999999999999999999999999999999876321 0011244433
Q ss_pred cc--ccchHHHH----------------------HhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SA--ELHVLDGI----------------------YTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~--~~~~~~~i----------------------~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. ..++.+.+ +..++... .+......+++++++...+++. +.+|+++||||
T Consensus 110 ~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDE 189 (276)
T PRK14271 110 PNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDE 189 (276)
T ss_pred CccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 11 11222221 22333321 1233445677787777666665 68899999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+. .++..+.+ +.+||++||+.+...
T Consensus 190 Pt~~LD~~~~~~l~-~~L~~~~~--~~tiiivsH~~~~~~ 226 (276)
T PRK14271 190 PTSALDPTTTEKIE-EFIRSLAD--RLTVIIVTHNLAQAA 226 (276)
T ss_pred CcccCCHHHHHHHH-HHHHHHhc--CCEEEEEeCCHHHHH
Confidence 99999998777774 45555654 489999999998653
No 277
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.3e-15 Score=165.99 Aligned_cols=141 Identities=16% Similarity=0.229 Sum_probs=95.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||+|||||||+|+++... . +...|+|+.
T Consensus 14 ~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~ 93 (252)
T PRK14272 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQK 93 (252)
T ss_pred ECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEecc
Confidence 4456789999999999999999999999999999999986321 0 011233333
Q ss_pred cc---ccchHHHHHh----------------------hCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SA---ELHVLDGIYT----------------------RMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~---~~~~~~~i~~----------------------~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
.. ..++.+.+.. .++.. +......+.+++++++...+++. +.+|+++|||
T Consensus 94 ~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 94 PNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred CccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 11 1223333210 11110 11122345677777776666655 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||++|+|+.....+. .+++.+.+ +.++|++||+.+...
T Consensus 174 EP~~~LD~~~~~~l~-~~l~~~~~--~~tiii~sH~~~~~~ 211 (252)
T PRK14272 174 EPTSALDPASTARIE-DLMTDLKK--VTTIIIVTHNMHQAA 211 (252)
T ss_pred CCCccCCHHHHHHHH-HHHHHHhc--CCeEEEEeCCHHHHH
Confidence 999999998777764 45565643 689999999988654
No 278
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.62 E-value=2.4e-15 Score=166.89 Aligned_cols=141 Identities=17% Similarity=0.186 Sum_probs=94.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----hhcc-----------------------cccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----AQVG-----------------------SFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----aq~g-----------------------~~vp~~ 828 (1083)
+++..+++|++|++.+|++++|+||||||||||||+|+++.-. ...| .|+++.
T Consensus 20 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 99 (264)
T PRK14243 20 YGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQK 99 (264)
T ss_pred ECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccC
Confidence 3455788999999999999999999999999999999976421 0011 233332
Q ss_pred ccc--cchHHHHH--------------------hhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 829 SAE--LHVLDGIY--------------------TRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 829 ~~~--~~~~~~i~--------------------~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
... .++.+.+. ..++..+ ........+++++++...+++. +.+|+++|||||+
T Consensus 100 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt 179 (264)
T PRK14243 100 PNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPC 179 (264)
T ss_pred CccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 110 12222221 1122211 1122334577777776666665 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ ..++..+.+ +.+||++||+.+...
T Consensus 180 ~~LD~~~~~~l-~~~L~~~~~--~~tvi~vtH~~~~~~ 214 (264)
T PRK14243 180 SALDPISTLRI-EELMHELKE--QYTIIIVTHNMQQAA 214 (264)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCEEEEEecCHHHHH
Confidence 99999888777 455555654 479999999987653
No 279
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.62 E-value=2e-15 Score=161.48 Aligned_cols=138 Identities=12% Similarity=0.078 Sum_probs=92.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~~ 836 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|..... .++.+
T Consensus 21 ~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~ 100 (207)
T cd03369 21 PPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRS 100 (207)
T ss_pred cccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHH
Confidence 4689999999999999999999999999999999875311 1112344444211 12222
Q ss_pred HHHhhCCc-chh------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 001405 837 GIYTRMGA-SDS------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMV 908 (1083)
Q Consensus 837 ~i~~~~~~-~d~------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~v 908 (1083)
.+...-.. .+. +......+++++++...+++. +.+|+++|||||++|+|+.....+ ..++..+. .+.++
T Consensus 101 ~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l-~~~l~~~~--~~~ti 177 (207)
T cd03369 101 NLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALI-QKTIREEF--TNSTI 177 (207)
T ss_pred HhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHH-HHHHHHhc--CCCEE
Confidence 22100000 000 122345677777666555554 689999999999999999877766 45555553 37899
Q ss_pred EEEeCchHHHH
Q 001405 909 LFVTHYPKIAD 919 (1083)
Q Consensus 909 l~~TH~~~l~~ 919 (1083)
|++||+.++..
T Consensus 178 ii~th~~~~~~ 188 (207)
T cd03369 178 LTIAHRLRTII 188 (207)
T ss_pred EEEeCCHHHHh
Confidence 99999998764
No 280
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.62 E-value=2.4e-15 Score=167.80 Aligned_cols=151 Identities=15% Similarity=0.037 Sum_probs=100.4
Q ss_pred eeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-------ccccccccccc--
Q 001405 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-------VGSFVPASSAE-- 831 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-------~g~~vp~~~~~-- 831 (1083)
.|.+++.... .+.+++|++|++.+|++++|+||||||||||||+|+++..... .-.|+|+....
T Consensus 39 ~l~i~nls~~-------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g~i~yv~q~~~l~~ 111 (282)
T cd03291 39 NLFFSNLCLV-------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWIMP 111 (282)
T ss_pred eEEEEEEEEe-------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEEEEeCcccccc
Confidence 4666665441 3568999999999999999999999999999999987642111 01244443210
Q ss_pred cchHHHH--------------HhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 832 LHVLDGI--------------YTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 832 ~~~~~~i--------------~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
.++.+.+ +..+++.+.+. .....+++++++...+++. +.+|+++|||||++|+|
T Consensus 112 ~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD 191 (282)
T cd03291 112 GTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD 191 (282)
T ss_pred cCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence 1222222 11222222111 1124677777776666655 68899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
+.....+...++..+. .+.+||++||+.+....
T Consensus 192 ~~~~~~l~~~ll~~~~--~~~tIiiisH~~~~~~~ 224 (282)
T cd03291 192 VFTEKEIFESCVCKLM--ANKTRILVTSKMEHLKK 224 (282)
T ss_pred HHHHHHHHHHHHHHhh--CCCEEEEEeCChHHHHh
Confidence 9877777555555554 36899999999887653
No 281
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=2.6e-15 Score=166.84 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=95.6
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------------hhcccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------------------AQVGSFVP 826 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------------------aq~g~~vp 826 (1083)
++++.+++|++|++++|++++|+||||||||||||+|+++.-. .+...|+|
T Consensus 26 ~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~ 105 (265)
T PRK14252 26 YGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVF 105 (265)
T ss_pred ECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEc
Confidence 3455799999999999999999999999999999999876310 01112444
Q ss_pred ccccc--cchHHHH----------------------HhhCCcc----hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 827 ASSAE--LHVLDGI----------------------YTRMGAS----DSIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 827 ~~~~~--~~~~~~i----------------------~~~~~~~----d~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
..... .++.+.+ +..++.. +.+......+++++++...+++. +.+|+++||
T Consensus 106 q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 185 (265)
T PRK14252 106 QKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLF 185 (265)
T ss_pred cCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 33110 1222222 1122221 11223345577777777666665 689999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||++|+|+.....+. .++..+.+ ++++|++||+.+...
T Consensus 186 DEPt~gLD~~~~~~l~-~~l~~l~~--~~tiiivth~~~~~~ 224 (265)
T PRK14252 186 DEPTSALDPIATASIE-ELISDLKN--KVTILIVTHNMQQAA 224 (265)
T ss_pred eCCCccCCHHHHHHHH-HHHHHHHh--CCEEEEEecCHHHHH
Confidence 9999999998777764 55555654 589999999998764
No 282
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.61 E-value=1.7e-15 Score=201.54 Aligned_cols=147 Identities=14% Similarity=0.123 Sum_probs=109.6
Q ss_pred ecccc--cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc-
Q 001405 774 TILLD--NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA- 830 (1083)
Q Consensus 774 ~~~~~--~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~- 830 (1083)
+.|++ +.+++||+|++++|++++|+||||||||||||+|+++.. ..++ +|+|+..+
T Consensus 1945 K~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I-Gy~pQ~~~L 2023 (2272)
T TIGR01257 1945 KVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM-GYCPQFDAI 2023 (2272)
T ss_pred EEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE-EEEeccccC
Confidence 34543 579999999999999999999999999999999986531 1122 35555421
Q ss_pred --ccchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 --ELHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 --~~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.++.. +.++..++..+.......++++++++...++.+ +.+|++||||||++|+|+
T Consensus 2024 ~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp 2103 (2272)
T TIGR01257 2024 DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDP 2103 (2272)
T ss_pred CCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 11221 234455666665666678899999887766665 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
.....+ +.++..+.+ .|++||++||+++.++ ++++
T Consensus 2104 ~sr~~l-~~lL~~l~~-~g~TIILtTH~mee~e~lcDr 2139 (2272)
T TIGR01257 2104 QARRML-WNTIVSIIR-EGRAVVLTSHSMEECEALCTR 2139 (2272)
T ss_pred HHHHHH-HHHHHHHHh-CCCEEEEEeCCHHHHHHhCCE
Confidence 888777 667777766 5899999999998775 4543
No 283
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.7e-15 Score=164.20 Aligned_cols=141 Identities=17% Similarity=0.222 Sum_probs=94.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-------------------------hhcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-------------------------AQVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-------------------------aq~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||+|||||||+|+++.- . .+...|+|..
T Consensus 13 ~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~ 92 (250)
T PRK14266 13 FDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQK 92 (250)
T ss_pred eCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecC
Confidence 345578999999999999999999999999999999987631 0 0111334433
Q ss_pred ccc--cchHHHH----------------------HhhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGI----------------------YTRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i----------------------~~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+ +..++..+ .+......+++++++...+++. +.+|+++||||
T Consensus 93 ~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 172 (250)
T PRK14266 93 PNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDE 172 (250)
T ss_pred CccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 111 1122222 11222211 1122334566777776666555 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+ ..++..+.+ +.++|++||+.+...
T Consensus 173 P~~gLD~~~~~~l-~~~l~~~~~--~~tiii~sh~~~~~~ 209 (250)
T PRK14266 173 PCSALDPISTTKI-EDLIHKLKE--DYTIVIVTHNMQQAT 209 (250)
T ss_pred CCccCCHHHHHHH-HHHHHHHhc--CCeEEEEECCHHHHH
Confidence 9999999877777 455555543 789999999987654
No 284
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.3e-15 Score=184.63 Aligned_cols=140 Identities=14% Similarity=0.090 Sum_probs=102.2
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhccccccccc------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------AQVGSFVPASS------ 829 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------aq~g~~vp~~~------ 829 (1083)
+..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+..
T Consensus 274 ~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 353 (506)
T PRK13549 274 HIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIV 353 (506)
T ss_pred ccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCc
Confidence 35689999999999999999999999999999999876320 00012444331
Q ss_pred cccchH--------------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 830 AELHVL--------------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 830 ~~~~~~--------------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
..+++. +.++.+++.. +.......++++++++...+++. +.+|.++||||||
T Consensus 354 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt 433 (506)
T PRK13549 354 PVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPT 433 (506)
T ss_pred CCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 011221 2234445553 34455567888888888877766 6889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ ..++..+.+ .|.+||++||+++.+.
T Consensus 434 ~~LD~~~~~~l-~~~l~~l~~-~g~tvi~~sHd~~~~~ 469 (506)
T PRK13549 434 RGIDVGAKYEI-YKLINQLVQ-QGVAIIVISSELPEVL 469 (506)
T ss_pred CCcCHhHHHHH-HHHHHHHHH-CCCEEEEECCCHHHHH
Confidence 99999877777 556666766 5899999999998764
No 285
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.61 E-value=3.3e-15 Score=160.69 Aligned_cols=139 Identities=16% Similarity=0.127 Sum_probs=106.5
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------------------Hhhcccccccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------------------MAQVGSFVPAS 828 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------------------laq~g~~vp~~ 828 (1083)
.-.+|++|++..|+|++|.|-+|||||||+|++..+.- ..|.-..+|..
T Consensus 42 vGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhr 121 (386)
T COG4175 42 VGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHR 121 (386)
T ss_pred EeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccch
Confidence 44789999999999999999999999999999964321 11222222322
Q ss_pred ----ccccc-------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 829 ----SAELH-------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 829 ----~~~~~-------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+..++ .....+...|+.+........++++|++..-++++ +++|+++|||||++.|||.-+.
T Consensus 122 tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~ 201 (386)
T COG4175 122 TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRT 201 (386)
T ss_pred hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHH
Confidence 11111 12345677888888888888999999998887776 6899999999999999999998
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+-..+++.-. +.+.||+|+|||++.+-
T Consensus 202 ~mQdeLl~Lq~-~l~KTIvFitHDLdEAl 229 (386)
T COG4175 202 EMQDELLELQA-KLKKTIVFITHDLDEAL 229 (386)
T ss_pred HHHHHHHHHHH-HhCCeEEEEecCHHHHH
Confidence 88777776444 47899999999998873
No 286
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.61 E-value=3.9e-15 Score=165.98 Aligned_cols=141 Identities=15% Similarity=0.155 Sum_probs=95.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h--------------------hcccccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A--------------------QVGSFVPAS 828 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a--------------------q~g~~vp~~ 828 (1083)
++++.+++|++|++.+|++++|+||||||||||+|+|+++... . +.-.|+|++
T Consensus 35 ~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~ 114 (272)
T PRK14236 35 YGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQR 114 (272)
T ss_pred ECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecC
Confidence 3456799999999999999999999999999999999876321 0 111244433
Q ss_pred ccc--cchHHHHH----------------------hhCCcch----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 829 SAE--LHVLDGIY----------------------TRMGASD----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 829 ~~~--~~~~~~i~----------------------~~~~~~d----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
... .++.+.+. ..++..+ .+......+++++++...+++. +.+|+++||||
T Consensus 115 ~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 194 (272)
T PRK14236 115 PNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDE 194 (272)
T ss_pred CccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeC
Confidence 111 12222221 1122211 1222334567777776666665 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|++|+|+.....+ ..++..+.+ +.++|++||+.+...
T Consensus 195 Pt~gLD~~~~~~l-~~~L~~~~~--~~tiiivtH~~~~~~ 231 (272)
T PRK14236 195 PTSALDPISTLKI-EELITELKS--KYTIVIVTHNMQQAA 231 (272)
T ss_pred CcccCCHHHHHHH-HHHHHHHHh--CCeEEEEeCCHHHHH
Confidence 9999999877766 455555554 579999999998653
No 287
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.1e-15 Score=183.84 Aligned_cols=139 Identities=10% Similarity=0.080 Sum_probs=98.9
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------hccccccccc---cccch-------
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------QVGSFVPASS---AELHV------- 834 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------q~g~~vp~~~---~~~~~------- 834 (1083)
.++++.+++|++|++.+|++++|+||||||||||||+|+++.... .+ .|+|+.. ..+++
T Consensus 10 ~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~~~i-~~~~q~~~~~~~~tv~e~l~~~ 88 (530)
T PRK15064 10 QFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERL-GKLRQDQFAFEEFTVLDTVIMG 88 (530)
T ss_pred EeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEeccCCcCCCCcHHHHHHHh
Confidence 345667899999999999999999999999999999998754211 12 2333321 00111
Q ss_pred ----------------------------------------------HHHHHhhCCcchhHH-hchhhhHHHHHHHHHHHH
Q 001405 835 ----------------------------------------------LDGIYTRMGASDSIQ-QGRSTFLEELNEASYILR 867 (1083)
Q Consensus 835 ----------------------------------------------~~~i~~~~~~~d~~~-~~~stf~~e~~~~~~il~ 867 (1083)
+..++..+|..+... ...+++++++++...+++
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~qrv~lA~ 168 (530)
T PRK15064 89 HTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQ 168 (530)
T ss_pred hHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHHHHHHHH
Confidence 123445556544332 346788999988887776
Q ss_pred h-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 868 N-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 868 ~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
. +.+|+++||||||+|+|+.....+.. + +.+ .|.+||++||+.++..
T Consensus 169 aL~~~p~lLlLDEPt~~LD~~~~~~l~~-~---l~~-~~~tiiivsHd~~~~~ 216 (530)
T PRK15064 169 ALFSNPDILLLDEPTNNLDINTIRWLED-V---LNE-RNSTMIIISHDRHFLN 216 (530)
T ss_pred HHhcCCCEEEEcCCCcccCHHHHHHHHH-H---HHh-CCCeEEEEeCCHHHHH
Confidence 6 67899999999999999987765532 3 333 5889999999998754
No 288
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.60 E-value=1.9e-15 Score=175.64 Aligned_cols=150 Identities=13% Similarity=0.167 Sum_probs=110.6
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcc--------cc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVG--------SF 824 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g--------~~ 824 (1083)
.+.|+.-.++++|+|++.+|++++|+|.||+|||||+|+|+++.-. .+.| ..
T Consensus 15 ~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L 94 (500)
T COG1129 15 SKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSL 94 (500)
T ss_pred eEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhc
Confidence 5667888999999999999999999999999999999999865310 0111 11
Q ss_pred cccc-----------ccc-cch---------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC-CCCcEEEEeCCCC
Q 001405 825 VPAS-----------SAE-LHV---------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC-TAQSLVIVDELGR 882 (1083)
Q Consensus 825 vp~~-----------~~~-~~~---------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~-~~~sLvllDEp~~ 882 (1083)
+|.- ... +++ ...++.+++..........+++...+|+..|++++ .+..||||||||+
T Consensus 95 ~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTa 174 (500)
T COG1129 95 VPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTA 174 (500)
T ss_pred cCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 1210 000 111 22356667764446666777888888888888774 5667999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch-HHHHHhhhc
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP-KIADIKTKF 924 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~-~l~~l~~~~ 924 (1083)
.|+..+...++ .+++.|.. .|..+||+||.+ ++.+++|+.
T Consensus 175 aLt~~E~~~Lf-~~ir~Lk~-~Gv~ii~ISHrl~Ei~~i~Dri 215 (500)
T COG1129 175 ALTVKETERLF-DLIRRLKA-QGVAIIYISHRLDEVFEIADRI 215 (500)
T ss_pred cCCHHHHHHHH-HHHHHHHh-CCCEEEEEcCcHHHHHHhcCEE
Confidence 99999999985 56777876 799999999987 455677764
No 289
>PRK13409 putative ATPase RIL; Provisional
Probab=99.60 E-value=2.4e-15 Score=183.75 Aligned_cols=139 Identities=17% Similarity=0.113 Sum_probs=104.7
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-------hccccccccc---cccch---------------
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA-------QVGSFVPASS---AELHV--------------- 834 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-------q~g~~vp~~~---~~~~~--------------- 834 (1083)
+.+++++|++.+|++++|+||||||||||||+|+++.... ..-+|+|+.. ...++
T Consensus 353 ~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~ 432 (590)
T PRK13409 353 FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPELKISYKPQYIKPDYDGTVEDLLRSITDDLGSSY 432 (590)
T ss_pred EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEeeeEEEecccccCCCCCcHHHHHHHHhhhcChHH
Confidence 4588999999999999999999999999999998753211 0112444431 11111
Q ss_pred -HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 001405 835 -LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT 912 (1083)
Q Consensus 835 -~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~T 912 (1083)
...++..++..+......+++++++++...+++. +.+|+++||||||+|||+.....+. .++..+.++.|.++|++|
T Consensus 433 ~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~-~~l~~l~~~~g~tviivs 511 (590)
T PRK13409 433 YKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVA-KAIRRIAEEREATALVVD 511 (590)
T ss_pred HHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHH-HHHHHHHHhCCCEEEEEe
Confidence 2345666777777777788999988887777766 6899999999999999998888885 555556553589999999
Q ss_pred CchHHHH
Q 001405 913 HYPKIAD 919 (1083)
Q Consensus 913 H~~~l~~ 919 (1083)
||.+++.
T Consensus 512 HD~~~~~ 518 (590)
T PRK13409 512 HDIYMID 518 (590)
T ss_pred CCHHHHH
Confidence 9998765
No 290
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=2.6e-15 Score=183.04 Aligned_cols=140 Identities=19% Similarity=0.163 Sum_probs=102.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhcccccccccc-----c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFVPASSA-----E 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~vp~~~~-----~ 831 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++.. ..+.-.|+|+... .
T Consensus 299 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~ 378 (529)
T PRK15134 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPR 378 (529)
T ss_pred ceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCc
Confidence 568999999999999999999999999999999987531 0111134444320 1
Q ss_pred cchH-----------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 832 LHVL-----------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 832 ~~~~-----------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
+++. ..++..++.. +.......++++++++...+++. +.+|+++||||||+|+|+
T Consensus 379 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~ 458 (529)
T PRK15134 379 LNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDK 458 (529)
T ss_pred ccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCH
Confidence 1111 2234455654 34555667889999888777776 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.++.|.+||++||+++.+.
T Consensus 459 ~~~~~l~-~~l~~~~~~~~~tvi~vsHd~~~~~ 490 (529)
T PRK15134 459 TVQAQIL-ALLKSLQQKHQLAYLFISHDLHVVR 490 (529)
T ss_pred HHHHHHH-HHHHHHHHhhCCEEEEEeCCHHHHH
Confidence 8888885 4555565535899999999998764
No 291
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.6e-15 Score=182.33 Aligned_cols=137 Identities=13% Similarity=0.133 Sum_probs=100.9
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhccccccccc------cccc
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASS------AELH 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~------~~~~ 833 (1083)
+++|++|++.+|++++|+||||||||||||+|+++... .+.-+|+|+.. ..++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 357 (510)
T PRK09700 278 KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFS 357 (510)
T ss_pred cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCc
Confidence 89999999999999999999999999999999865210 01113455431 0111
Q ss_pred hH------------------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 834 VL------------------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 834 ~~------------------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
+. +.++..++.. +.......++++++++...+++. +.+|.++||||||
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt 437 (510)
T PRK09700 358 IAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPT 437 (510)
T ss_pred HHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 22 2344555654 44555667889988888777776 6889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|||+.....+. .++..+.+ .|.+||++||+++.+.
T Consensus 438 ~~LD~~~~~~l~-~~l~~l~~-~g~tvi~vsHd~~~~~ 473 (510)
T PRK09700 438 RGIDVGAKAEIY-KVMRQLAD-DGKVILMVSSELPEII 473 (510)
T ss_pred CCcCHHHHHHHH-HHHHHHHH-CCCEEEEEcCCHHHHH
Confidence 999998777774 56666665 5899999999987664
No 292
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.60 E-value=2.2e-15 Score=183.59 Aligned_cols=143 Identities=17% Similarity=0.133 Sum_probs=102.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h----------------------hccccccccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A----------------------QVGSFVPASS 829 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a----------------------q~g~~vp~~~ 829 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++... . +.-.|+|+..
T Consensus 22 ~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~ 101 (529)
T PRK15134 22 RTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP 101 (529)
T ss_pred eeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecCc
Confidence 4689999999999999999999999999999999876421 0 0113444431
Q ss_pred c--c---cch----------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 830 A--E---LHV----------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 830 ~--~---~~~----------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
. . ..+ ++.++..+|..+ ......+++++++++...+++. +.+|+++|||
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllD 181 (529)
T PRK15134 102 MVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIAD 181 (529)
T ss_pred hhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1 0 011 112344455543 2345667888888888777776 6899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhh
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKT 922 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~ 922 (1083)
|||+|||+.....+. .++..+.++.|.+||++||+++.+. +++
T Consensus 182 EPt~~LD~~~~~~l~-~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 225 (529)
T PRK15134 182 EPTTALDVSVQAQIL-QLLRELQQELNMGLLFITHNLSIVRKLAD 225 (529)
T ss_pred CCCCccCHHHHHHHH-HHHHHHHHhcCCeEEEEcCcHHHHHHhcC
Confidence 999999998888774 5666665534889999999997654 554
No 293
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.60 E-value=3e-15 Score=181.33 Aligned_cols=138 Identities=13% Similarity=0.086 Sum_probs=100.3
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhccccccccc------ccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASS------AEL 832 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~------~~~ 832 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++.. ..+.-.|+|+.. ..+
T Consensus 266 ~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~ 345 (501)
T PRK10762 266 PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM 345 (501)
T ss_pred CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC
Confidence 46899999999999999999999999999999986531 011123455431 111
Q ss_pred chH---------------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 833 HVL---------------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 833 ~~~---------------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
++. ..++.+++.. +.......++++++++...+++. +.+|+++||||||+|
T Consensus 346 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~ 425 (501)
T PRK10762 346 SVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRG 425 (501)
T ss_pred cHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCC
Confidence 111 2234445553 33455566888888888777776 578999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+.....+. .++..+.+ .|.++|++||+++.+.
T Consensus 426 LD~~~~~~l~-~~l~~~~~-~g~tviivtHd~~~~~ 459 (501)
T PRK10762 426 VDVGAKKEIY-QLINQFKA-EGLSIILVSSEMPEVL 459 (501)
T ss_pred CCHhHHHHHH-HHHHHHHH-CCCEEEEEcCCHHHHH
Confidence 9998888874 56666665 5899999999988764
No 294
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=2.3e-15 Score=182.49 Aligned_cols=137 Identities=14% Similarity=0.135 Sum_probs=100.2
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------hhccccccccc------cccc
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------AQVGSFVPASS------AELH 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------aq~g~~vp~~~------~~~~ 833 (1083)
+++|++|++.+|++++|+||||||||||||+|+++... ...-.|+|... ..++
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 58999999999999999999999999999999865210 01123555431 0111
Q ss_pred hH------------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 834 VL------------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 834 ~~------------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
+. +.++..+|.. +......+.+++++++...+++. +.+|+|+||||||+|+|+.
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~ 437 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChh
Confidence 11 2334455554 44455567888888888777766 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+. .++..+.+ .|.+||++|||++++.
T Consensus 438 ~~~~l~-~~l~~l~~-~g~tiIivsHd~~~i~ 467 (510)
T PRK15439 438 ARNDIY-QLIRSIAA-QNVAVLFISSDLEEIE 467 (510)
T ss_pred HHHHHH-HHHHHHHh-CCCEEEEECCCHHHHH
Confidence 888774 56666666 5899999999998764
No 295
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.60 E-value=1.7e-15 Score=183.43 Aligned_cols=140 Identities=14% Similarity=0.102 Sum_probs=101.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------hhcccccccccc-----
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------AQVGSFVPASSA----- 830 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------aq~g~~vp~~~~----- 830 (1083)
+..+++|++|++.+|++++|+||||||||||||+|+++... .+.-.|+|+...
T Consensus 272 ~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~ 351 (500)
T TIGR02633 272 HRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIV 351 (500)
T ss_pred cccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcC
Confidence 34689999999999999999999999999999999866321 000123333310
Q ss_pred -ccch--------------------------HHHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 831 -ELHV--------------------------LDGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 831 -~~~~--------------------------~~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
.+++ +..++.+++..+ .......++++++++...+++. +.+|+++||||||
T Consensus 352 ~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt 431 (500)
T TIGR02633 352 PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431 (500)
T ss_pred CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCC
Confidence 0011 123445555542 3455567888888888877776 5789999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|||+.....+ ..++..+.+ .|.+||++|||++.+.
T Consensus 432 ~~LD~~~~~~l-~~~l~~l~~-~g~tviivsHd~~~~~ 467 (500)
T TIGR02633 432 RGVDVGAKYEI-YKLINQLAQ-EGVAIIVVSSELAEVL 467 (500)
T ss_pred CCcCHhHHHHH-HHHHHHHHh-CCCEEEEECCCHHHHH
Confidence 99999877777 556666766 5889999999998664
No 296
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.59 E-value=3.4e-15 Score=161.57 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=90.8
Q ss_pred cccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------hhcccccccccc-----ccchHH----------
Q 001405 787 LHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------AQVGSFVPASSA-----ELHVLD---------- 836 (1083)
Q Consensus 787 l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------aq~g~~vp~~~~-----~~~~~~---------- 836 (1083)
|++.+|++++|+||||||||||+|+|+++... .+.-.|+|+... ..++.+
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 45678999999999999999999999865311 111234444311 112222
Q ss_pred ---------------HHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 837 ---------------GIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 837 ---------------~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
.++..++..+........+++++++...+++. +.+|+++|+|||++|+|+.....+.. ++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~-~l~~~ 159 (223)
T TIGR03771 81 GWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE-LFIEL 159 (223)
T ss_pred ccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH-HHHHH
Confidence 23334444444444556778888887776665 78999999999999999988888854 45556
Q ss_pred HhCCCcEEEEEeCchHHH
Q 001405 901 LEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~ 918 (1083)
.+ .|.++|++||+++..
T Consensus 160 ~~-~~~tvii~sH~~~~~ 176 (223)
T TIGR03771 160 AG-AGTAILMTTHDLAQA 176 (223)
T ss_pred HH-cCCEEEEEeCCHHHH
Confidence 55 589999999999854
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.59 E-value=4e-15 Score=181.05 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=101.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------H--------------------hhcccccccccc-
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------M--------------------AQVGSFVPASSA- 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------l--------------------aq~g~~vp~~~~- 830 (1083)
..+++|++|++.+|++++|+||||||||||||+|+++.. + .+.-.|+|+...
T Consensus 297 ~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l 376 (520)
T TIGR03269 297 VKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDL 376 (520)
T ss_pred ceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCccc
Confidence 468999999999999999999999999999999986531 1 010124444311
Q ss_pred --ccchHH--------------------HHHhhCCcch-----hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 831 --ELHVLD--------------------GIYTRMGASD-----SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 831 --~~~~~~--------------------~i~~~~~~~d-----~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
.+++.+ .++..++..+ .......++++++++...+++. +.+|+++||||||+
T Consensus 377 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~ 456 (520)
T TIGR03269 377 YPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTG 456 (520)
T ss_pred CCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 111221 2344555543 3455667888888888777765 68899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|+|+.....+. .++..+.++.|.+||++||+++.+.
T Consensus 457 ~LD~~~~~~l~-~~l~~l~~~~g~tvi~vsHd~~~~~ 492 (520)
T TIGR03269 457 TMDPITKVDVT-HSILKAREEMEQTFIIVSHDMDFVL 492 (520)
T ss_pred cCCHHHHHHHH-HHHHHHHHHcCcEEEEEeCCHHHHH
Confidence 99998888875 4555555435899999999988764
No 298
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.4e-15 Score=186.35 Aligned_cols=143 Identities=13% Similarity=0.107 Sum_probs=100.2
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh------cc---ccccccc-----cccc----
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ------VG---SFVPASS-----AELH---- 833 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq------~g---~~vp~~~-----~~~~---- 833 (1083)
+.+.|+++.+++||||++.+|++++|+||||||||||||+|++...... .+ .|++... ..+.
T Consensus 7 ls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~ 86 (638)
T PRK10636 7 LQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPALEYVID 86 (638)
T ss_pred EEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCHHHHHHH
Confidence 3455677889999999999999999999999999999999987531100 00 1222110 0000
Q ss_pred -----------------------------------------hHHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CC
Q 001405 834 -----------------------------------------VLDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CT 870 (1083)
Q Consensus 834 -----------------------------------------~~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~ 870 (1083)
.+..++..+|.. +......+++++++++...+++. +.
T Consensus 87 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~ 166 (638)
T PRK10636 87 GDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALIC 166 (638)
T ss_pred hhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHcc
Confidence 012234455554 34556678899999888877776 68
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 871 ~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+||||||+|||+.....+ .+.|.+ .+.+||++|||.++..
T Consensus 167 ~P~lLLLDEPtn~LD~~~~~~L----~~~L~~-~~~tviivsHd~~~l~ 210 (638)
T PRK10636 167 RSDLLLLDEPTNHLDLDAVIWL----EKWLKS-YQGTLILISHDRDFLD 210 (638)
T ss_pred CCCEEEEcCCCCcCCHHHHHHH----HHHHHh-CCCeEEEEeCCHHHHH
Confidence 9999999999999999765443 344444 4679999999988764
No 299
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.59 E-value=4.5e-15 Score=164.16 Aligned_cols=139 Identities=12% Similarity=0.011 Sum_probs=92.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccccc--chH-
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAEL--HVL- 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~~--~~~- 835 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++... .+...|++.....+ ++.
T Consensus 34 ~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~ 113 (257)
T cd03288 34 KPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRF 113 (257)
T ss_pred CcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHH
Confidence 4689999999999999999999999999999999875310 11113444332111 111
Q ss_pred -------------HHHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 836 -------------DGIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 836 -------------~~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
...+...+..+.+. .....+++++++...+++. +.+|+++|||||++|+|+....
T Consensus 114 nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~ 193 (257)
T cd03288 114 NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193 (257)
T ss_pred hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 11112222222111 1224577777776666655 6899999999999999998766
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+ ..++..+. .++++|++||+++....
T Consensus 194 ~l-~~~l~~~~--~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 194 IL-QKVVMTAF--ADRTVVTIAHRVSTILD 220 (257)
T ss_pred HH-HHHHHHhc--CCCEEEEEecChHHHHh
Confidence 55 45555553 47899999999988753
No 300
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.59 E-value=8.2e-15 Score=144.57 Aligned_cols=145 Identities=18% Similarity=0.180 Sum_probs=112.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH------------------------H-hhccccccccccc-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI------------------------M-AQVGSFVPASSAE- 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~------------------------l-aq~g~~vp~~~~~- 831 (1083)
.-.|+.+|+|.+++|+.++|+||+||||||||-.++++-. - .++| ||.+.+.-
T Consensus 22 ~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vG-fVFQSF~Li 100 (228)
T COG4181 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVG-FVFQSFHLI 100 (228)
T ss_pred ceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhcccee-EEEEeeecc
Confidence 4578999999999999999999999999999999986421 0 1122 22211110
Q ss_pred -----------------------cchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 832 -----------------------LHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 832 -----------------------~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.......+.++|..+.+......++++.++...|.+. +..|.+++-||||.+||..
T Consensus 101 p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~ 180 (228)
T COG4181 101 PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180 (228)
T ss_pred ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchh
Confidence 1123456788888888888888888888887777766 7899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhc
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~ 924 (1083)
.|..|+..++.. ..+.|.|.+++|||+.++.-|++.
T Consensus 181 Tg~~iaDLlF~l-nre~G~TlVlVTHD~~LA~Rc~R~ 216 (228)
T COG4181 181 TGDKIADLLFAL-NRERGTTLVLVTHDPQLAARCDRQ 216 (228)
T ss_pred HHHHHHHHHHHH-hhhcCceEEEEeCCHHHHHhhhhe
Confidence 999998766664 445899999999999998766543
No 301
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.58 E-value=6.3e-15 Score=182.45 Aligned_cols=143 Identities=13% Similarity=0.133 Sum_probs=104.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------H----------------------------hhccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------M----------------------------AQVGS 823 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------l----------------------------aq~g~ 823 (1083)
..+++||+|++.+|++++|+||||||||||+|+|+++.. + .++ .
T Consensus 29 ~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~i-g 107 (623)
T PRK10261 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADM-A 107 (623)
T ss_pred eeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCE-E
Confidence 468999999999999999999999999999999986521 0 012 2
Q ss_pred cccccc-----cccchH----------------------HHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCC
Q 001405 824 FVPASS-----AELHVL----------------------DGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQ 872 (1083)
Q Consensus 824 ~vp~~~-----~~~~~~----------------------~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~ 872 (1083)
||++.. ..+++. ..++..+|..+ .+.....+++++|++...|++. +.+|
T Consensus 108 ~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P 187 (623)
T PRK10261 108 MIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRP 187 (623)
T ss_pred EEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCC
Confidence 344321 111221 12345566642 3556677899999988877776 6899
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 873 SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 873 sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
+||||||||+|||+.....+. .++..+.++.|.+||++||+++.+ .++++
T Consensus 188 ~lLllDEPt~~LD~~~~~~l~-~ll~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 188 AVLIADEPTTALDVTIQAQIL-QLIKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred CEEEEeCCCCccCHHHHHHHH-HHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 999999999999998877774 566667653589999999998765 45553
No 302
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.58 E-value=4.6e-15 Score=197.38 Aligned_cols=143 Identities=14% Similarity=0.149 Sum_probs=108.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccc---ccch-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSA---ELHV- 834 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~---~~~~- 834 (1083)
++.+++|++|++.+|++++|+||||||||||||+|+++.. ..+..+++|+... .+++
T Consensus 942 ~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~LTV~ 1021 (2272)
T TIGR01257 942 GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVA 1021 (2272)
T ss_pred CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEEEecCCcCCCCCCHH
Confidence 4679999999999999999999999999999999987631 1111234554421 1122
Q ss_pred --------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHH
Q 001405 835 --------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIA 893 (1083)
Q Consensus 835 --------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~ 893 (1083)
++.++..+|..+......++++++|++...++++ +.+|++|||||||+|+|+.....+
T Consensus 1022 E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l- 1100 (2272)
T TIGR01257 1022 EHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSI- 1100 (2272)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHH-
Confidence 2234556666666666778899999888777765 689999999999999999888877
Q ss_pred HHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 894 YATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 894 ~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
+.++..+. .|.+||++||+++.++ ++++
T Consensus 1101 ~~lL~~l~--~g~TIIltTHdmdea~~laDr 1129 (2272)
T TIGR01257 1101 WDLLLKYR--SGRTIIMSTHHMDEADLLGDR 1129 (2272)
T ss_pred HHHHHHHh--CCCEEEEEECCHHHHHHhCCE
Confidence 56666663 4889999999998875 4543
No 303
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=4.5e-15 Score=179.77 Aligned_cols=138 Identities=14% Similarity=0.046 Sum_probs=100.3
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------H--------------hhccccccccc------ccc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------M--------------AQVGSFVPASS------AEL 832 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------l--------------aq~g~~vp~~~------~~~ 832 (1083)
.+++|++|++.+|++++|+||||||||||||+|+++.. + .+.-.|+|+.. ...
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 48899999999999999999999999999999985421 0 00112333321 001
Q ss_pred chH---------------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 833 HVL---------------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 833 ~~~---------------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
++. ..++.+++.. +.......++++++++...+++. +.+|.|+||||||+|
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~ 426 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRG 426 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCC
Confidence 111 2344455552 34555667889999888877776 578999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+.....+. .++..+.+ .|.+||++|||.+.+.
T Consensus 427 LD~~~~~~l~-~~l~~l~~-~g~tviivsHd~~~~~ 460 (501)
T PRK11288 427 IDVGAKHEIY-NVIYELAA-QGVAVLFVSSDLPEVL 460 (501)
T ss_pred CCHhHHHHHH-HHHHHHHh-CCCEEEEECCCHHHHH
Confidence 9998888884 55666666 5889999999998764
No 304
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.58 E-value=9.4e-15 Score=166.63 Aligned_cols=139 Identities=19% Similarity=0.257 Sum_probs=98.6
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------hhcccccccccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------AQVGSFVPASSA 830 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------aq~g~~vp~~~~ 830 (1083)
...+++|++|++.+|++++|+|||||||||||++|+++... .+.-.|+|+...
T Consensus 94 ~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~ 173 (329)
T PRK14257 94 TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPT 173 (329)
T ss_pred CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCc
Confidence 35799999999999999999999999999999999876421 111234444321
Q ss_pred --ccchHHHH----------------------HhhCCc----chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 831 --ELHVLDGI----------------------YTRMGA----SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 831 --~~~~~~~i----------------------~~~~~~----~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
..++.+++ +..++. .+.+......+++++++...++++ +.+|+++|||||+
T Consensus 174 ~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPt 253 (329)
T PRK14257 174 PFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPT 253 (329)
T ss_pred cCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 11222222 122222 122344556788888887777775 6899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+|+|+.....+ ..++..+.+ ++|+|++||+++.+.
T Consensus 254 s~LD~~~~~~i-~~~i~~l~~--~~Tii~iTH~l~~i~ 288 (329)
T PRK14257 254 SALDPIATAKI-EELILELKK--KYSIIIVTHSMAQAQ 288 (329)
T ss_pred ccCCHHHHHHH-HHHHHHHhc--CCEEEEEeCCHHHHH
Confidence 99999887776 555666654 689999999998764
No 305
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2e-14 Score=146.84 Aligned_cols=142 Identities=16% Similarity=0.120 Sum_probs=97.0
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHH--------------------HHHhhccccccccc---ccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALI--------------------GIMAQVGSFVPASS---AEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~--------------------~~laq~g~~vp~~~---~~~ 832 (1083)
..++.++++++|++.+|++.+|+||||+|||||||.+++- .-||+.-..+|+.. +.+
T Consensus 11 ~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 11 LAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred eecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 3578899999999999999999999999999999999631 12333333333321 111
Q ss_pred c-----------------------hHHHHHhhCCcchhHHhchhhhHHHHHH---HHHHHHhCC----CCcEEEEeCCCC
Q 001405 833 H-----------------------VLDGIYTRMGASDSIQQGRSTFLEELNE---ASYILRNCT----AQSLVIVDELGR 882 (1083)
Q Consensus 833 ~-----------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~---~~~il~~~~----~~sLvllDEp~~ 882 (1083)
+ +..+.+.+.+.........-+++++.++ +++.+.... .+..++|||||+
T Consensus 91 tv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPts 170 (259)
T COG4559 91 TVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTS 170 (259)
T ss_pred EHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCcc
Confidence 1 1233444444443333444456665555 445555543 345999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+|......+. .+...+.. .|+.|+.+-||++++.
T Consensus 171 aLDi~HQ~~tl-~laR~la~-~g~~V~~VLHDLNLAA 205 (259)
T COG4559 171 ALDIAHQHHTL-RLARQLAR-EGGAVLAVLHDLNLAA 205 (259)
T ss_pred ccchHHHHHHH-HHHHHHHh-cCCcEEEEEccchHHH
Confidence 99999888875 45666776 5799999999999875
No 306
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.9e-15 Score=179.88 Aligned_cols=139 Identities=12% Similarity=0.045 Sum_probs=100.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc------c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA------E 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~------~ 831 (1083)
+.++++++|++.+|++++|+||||||||||||+|+++.. +.+...|+|+... .
T Consensus 261 ~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 340 (491)
T PRK10982 261 QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAY 340 (491)
T ss_pred CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccC
Confidence 358999999999999999999999999999999986431 0111224443310 0
Q ss_pred cch---------------------------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 832 LHV---------------------------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 832 ~~~---------------------------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
+.+ +..++..++.. +.......++++++++...+++. +.+|.++||||||+
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~ 420 (491)
T PRK10982 341 LDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTR 420 (491)
T ss_pred CcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 111 11233344442 23455667888888888777765 68999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|+|+.....+. .++..+.+ .|.+||++||+.+.+.
T Consensus 421 gLD~~~~~~~~-~~l~~l~~-~~~tvi~vsHd~~~~~ 455 (491)
T PRK10982 421 GIDVGAKFEIY-QLIAELAK-KDKGIIIISSEMPELL 455 (491)
T ss_pred ccChhHHHHHH-HHHHHHHH-CCCEEEEECCChHHHH
Confidence 99998888884 56666766 5899999999988764
No 307
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.57 E-value=5.1e-15 Score=162.02 Aligned_cols=155 Identities=13% Similarity=0.115 Sum_probs=108.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---hh--------------------------ccccccccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---AQ--------------------------VGSFVPASS 829 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---aq--------------------------~g~~vp~~~ 829 (1083)
..+++||||++.+|++++|+|.+||||||+.+.|+++.-- .. -.++++++.
T Consensus 18 v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p 97 (316)
T COG0444 18 VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP 97 (316)
T ss_pred EEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcCc
Confidence 4578999999999999999999999999999999865420 00 112333331
Q ss_pred c-c----cch-----------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 830 A-E----LHV-----------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 830 ~-~----~~~-----------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
. . +++ ...++..+|..+ .+....-.|+++|+|+..|+.+ +.+|+|||.
T Consensus 98 ~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIA 177 (316)
T COG0444 98 MTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIA 177 (316)
T ss_pred hhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEe
Confidence 0 0 000 112344455443 3344455789999998776655 789999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhhccCCcceeEEEEEe
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTKFTGSVGTYHVSYLT 937 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~~~~~v~~~~~~~~~ 937 (1083)
||||++||......|. .+++.|.++.|+++||+|||+.++ +++|+. ...|+-..++
T Consensus 178 DEPTTALDvt~QaqIl-~Ll~~l~~e~~~aiilITHDl~vva~~aDri---~VMYaG~iVE 234 (316)
T COG0444 178 DEPTTALDVTVQAQIL-DLLKELQREKGTALILITHDLGVVAEIADRV---AVMYAGRIVE 234 (316)
T ss_pred CCCcchhhHHHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHHHhcceE---EEEECcEEEE
Confidence 9999999999888884 567777776899999999999865 466543 3344444444
No 308
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=5.9e-15 Score=182.87 Aligned_cols=139 Identities=15% Similarity=0.128 Sum_probs=101.2
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------hccccccccc-c----ccch-----
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------QVGSFVPASS-A----ELHV----- 834 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------q~g~~vp~~~-~----~~~~----- 834 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|++..... ++ .|+++.. . ...+
T Consensus 321 ~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-gy~~Q~~~~~l~~~~~~~~~~~ 399 (638)
T PRK10636 321 GYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLA 399 (638)
T ss_pred EeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCCEEE-EEecCcchhhCCccchHHHHHH
Confidence 456678999999999999999999999999999999998754211 12 2444321 0 0011
Q ss_pred ----------HHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 001405 835 ----------LDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902 (1083)
Q Consensus 835 ----------~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~ 902 (1083)
+..++.+++.. +......+++++++++...+++. +.+|.|+||||||+|||+.....+...+.+ +
T Consensus 400 ~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~-~-- 476 (638)
T PRK10636 400 RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALID-F-- 476 (638)
T ss_pred HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHH-c--
Confidence 12345566664 35666778899988887777766 588999999999999999877776443332 2
Q ss_pred CCCcEEEEEeCchHHHH
Q 001405 903 HKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 903 ~~~~~vl~~TH~~~l~~ 919 (1083)
+.+||++|||.+++.
T Consensus 477 --~gtvi~vSHd~~~~~ 491 (638)
T PRK10636 477 --EGALVVVSHDRHLLR 491 (638)
T ss_pred --CCeEEEEeCCHHHHH
Confidence 348999999998764
No 309
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.57 E-value=5.2e-15 Score=181.20 Aligned_cols=139 Identities=16% Similarity=0.140 Sum_probs=96.5
Q ss_pred eccc-ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------hcccccccccc---ccchHHHH-
Q 001405 774 TILL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------QVGSFVPASSA---ELHVLDGI- 838 (1083)
Q Consensus 774 ~~~~-~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------q~g~~vp~~~~---~~~~~~~i- 838 (1083)
..|+ ++.+++|++|++.+|++++|+||||||||||||+|+++.... ++ .|+|+... .+++.+.+
T Consensus 14 ~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~~~i-~~v~Q~~~~~~~~tv~e~l~ 92 (556)
T PRK11819 14 KVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPGIKV-GYLPQEPQLDPEKTVRENVE 92 (556)
T ss_pred EEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEE-EEEecCCCCCCCCcHHHHHH
Confidence 3455 577899999999999999999999999999999998764211 12 24554421 12333322
Q ss_pred --------------------------------------------------------HhhCCcchhHHhchhhhHHHHHHH
Q 001405 839 --------------------------------------------------------YTRMGASDSIQQGRSTFLEELNEA 862 (1083)
Q Consensus 839 --------------------------------------------------------~~~~~~~d~~~~~~stf~~e~~~~ 862 (1083)
+..+|.. ......+.+++++++.
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~LSgGqkqr 171 (556)
T PRK11819 93 EGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP-PWDAKVTKLSGGERRR 171 (556)
T ss_pred HhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC-cccCchhhcCHHHHHH
Confidence 1112221 1234456788888887
Q ss_pred HHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 863 SYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 863 ~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+++. +.+|+++||||||+|||+.....+. .++. + .+.+||++||+.+++.
T Consensus 172 v~la~al~~~p~vlLLDEPt~~LD~~~~~~l~-~~L~---~-~~~tviiisHd~~~~~ 224 (556)
T PRK11819 172 VALCRLLLEKPDMLLLDEPTNHLDAESVAWLE-QFLH---D-YPGTVVAVTHDRYFLD 224 (556)
T ss_pred HHHHHHHhCCCCEEEEcCCCCcCChHHHHHHH-HHHH---h-CCCeEEEEeCCHHHHH
Confidence 777766 6889999999999999998766553 3333 3 2359999999998765
No 310
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=180.17 Aligned_cols=140 Identities=15% Similarity=0.074 Sum_probs=103.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-----------------------Hhhccccccccc-----c
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-----------------------MAQVGSFVPASS-----A 830 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------------------laq~g~~vp~~~-----~ 830 (1083)
..+++||+|++.+|++++|+||||||||||+|+|+++.. ....-.|+|+.. .
T Consensus 337 ~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~ 416 (623)
T PRK10261 337 VHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDP 416 (623)
T ss_pred eEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCC
Confidence 468999999999999999999999999999999986531 001113454431 0
Q ss_pred ccchH----------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 831 ELHVL----------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 ~~~~~----------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
.+.+. ..++..+|.. +........+++++++...|++. +.+|+||||||||+|||+
T Consensus 417 ~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~ 496 (623)
T PRK10261 417 RQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDV 496 (623)
T ss_pred CCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 11121 2244556664 44556677899999988877776 689999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+. .++..+.++.|.++||+|||++.+.
T Consensus 497 ~~~~~i~-~ll~~l~~~~g~tvi~isHdl~~v~ 528 (623)
T PRK10261 497 SIRGQII-NLLLDLQRDFGIAYLFISHDMAVVE 528 (623)
T ss_pred HHHHHHH-HHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 8888884 5555565535899999999998764
No 311
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.57 E-value=2e-14 Score=141.86 Aligned_cols=151 Identities=20% Similarity=0.165 Sum_probs=105.6
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------H--------hh-ccc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------M--------AQ-VGS 823 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------l--------aq-~g~ 823 (1083)
.+.|+...-..||+|++-+|++++|+|.+||||||||++|+.-.. | .. --.
T Consensus 13 sk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG 92 (258)
T COG4107 13 SKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWG 92 (258)
T ss_pred hhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccc
Confidence 345677777889999999999999999999999999999963210 0 00 011
Q ss_pred cc---cccccccch------HH------------------HHHhhCCc-chhHHhchhhhHHHHHHHHHHHHh-CCCCcE
Q 001405 824 FV---PASSAELHV------LD------------------GIYTRMGA-SDSIQQGRSTFLEELNEASYILRN-CTAQSL 874 (1083)
Q Consensus 824 ~v---p~~~~~~~~------~~------------------~i~~~~~~-~d~~~~~~stf~~e~~~~~~il~~-~~~~sL 874 (1083)
|| |.+..++.+ -+ ..+.++.+ .+.+.....+|+++|++...|+++ .+.|.|
T Consensus 93 ~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrL 172 (258)
T COG4107 93 FVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRL 172 (258)
T ss_pred eeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCce
Confidence 22 221111110 01 11222221 233444567999999999999987 699999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhc
Q 001405 875 VIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924 (1083)
Q Consensus 875 vllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~ 924 (1083)
+++||||.|+|..-...+ ..++.-|..+.+..++++|||+..+.+....
T Consensus 173 vfMDEPTGGLDVSVQARL-LDllrgLv~~l~la~viVTHDl~VarLla~r 221 (258)
T COG4107 173 VFMDEPTGGLDVSVQARL-LDLLRGLVRELGLAVVIVTHDLAVARLLADR 221 (258)
T ss_pred EEecCCCCCcchhhHHHH-HHHHHHHHHhcCceEEEEechhHHHHHhhhc
Confidence 999999999998766666 4566666666899999999999999876543
No 312
>PRK13409 putative ATPase RIL; Provisional
Probab=99.57 E-value=9.7e-15 Score=178.54 Aligned_cols=143 Identities=17% Similarity=0.105 Sum_probs=104.2
Q ss_pred eecccc-cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--h-----------------------------
Q 001405 773 DTILLD-NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--Q----------------------------- 820 (1083)
Q Consensus 773 ~~~~~~-~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--q----------------------------- 820 (1083)
.+.|+. .+++.+++ .+.+|++++|+||||+|||||||+|+++.... +
T Consensus 80 ~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~ 158 (590)
T PRK13409 80 VHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNG 158 (590)
T ss_pred eEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhcc
Confidence 344665 48999999 89999999999999999999999998642100 0
Q ss_pred -cc-cccccccccc------------------chHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeC
Q 001405 821 -VG-SFVPASSAEL------------------HVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDE 879 (1083)
Q Consensus 821 -~g-~~vp~~~~~~------------------~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDE 879 (1083)
.. .+.|+..... ..++.++..++.........+++++++++...+++. +.+|+++||||
T Consensus 159 ~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDE 238 (590)
T PRK13409 159 EIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDE 238 (590)
T ss_pred CcceeecccchhhhhhhhcchHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 00 1111110000 112345666777766777788999988887777766 68999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 880 p~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
||+|||+.....+. .++..+.+ |.++|++||+++...
T Consensus 239 Pts~LD~~~~~~l~-~~i~~l~~--g~tvIivsHd~~~l~ 275 (590)
T PRK13409 239 PTSYLDIRQRLNVA-RLIRELAE--GKYVLVVEHDLAVLD 275 (590)
T ss_pred CCCCCCHHHHHHHH-HHHHHHHC--CCEEEEEeCCHHHHH
Confidence 99999998888775 45566654 889999999988764
No 313
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.56 E-value=8.8e-15 Score=158.52 Aligned_cols=142 Identities=18% Similarity=0.189 Sum_probs=92.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHH-HHHHHHH--HH---------hhcc-ccccc--------------cc-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYI-RQVALIG--IM---------AQVG-SFVPA--------------SS- 829 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlL-r~i~~~~--~l---------aq~g-~~vp~--------------~~- 829 (1083)
+..++++|||++.+|++++|+||||||||||+ ..|.... .+ ...| .+.|. ..
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIAIDQKT 86 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhcccCccccccccCCCceEEecCCC
Confidence 45688899999999999999999999999996 3332100 00 0010 11111 00
Q ss_pred ----c--ccch-------H------------HHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCC--cEEEEeCC
Q 001405 830 ----A--ELHV-------L------------DGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQ--SLVIVDEL 880 (1083)
Q Consensus 830 ----~--~~~~-------~------------~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~--sLvllDEp 880 (1083)
. .++. + ...+..++..+ ......+++++++++...+++. +.+| +++|+|||
T Consensus 87 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP 166 (226)
T cd03270 87 TSRNPRSTVGTVTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP 166 (226)
T ss_pred CCCCCCccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 0 0000 0 01223344433 3455667888888887777776 3454 69999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
++|+|+.....+.. ++..+.+ .|.++|++||+++.+.++
T Consensus 167 t~gLD~~~~~~l~~-~l~~~~~-~g~tii~itH~~~~~~~~ 205 (226)
T cd03270 167 SIGLHPRDNDRLIE-TLKRLRD-LGNTVLVVEHDEDTIRAA 205 (226)
T ss_pred ccCCCHHHHHHHHH-HHHHHHh-CCCEEEEEEeCHHHHHhC
Confidence 99999998888854 4555655 589999999999876543
No 314
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.56 E-value=9.2e-15 Score=178.27 Aligned_cols=139 Identities=16% Similarity=0.145 Sum_probs=100.2
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------hcccccccccc-----ccchH------
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------QVGSFVPASSA-----ELHVL------ 835 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------q~g~~vp~~~~-----~~~~~------ 835 (1083)
|+++.+++|++|++.+|++++|+||||||||||||+|+++.... ....|+|+... .+++.
T Consensus 329 ~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~~~q~~~~~~~~~~t~~~~~~~~ 408 (530)
T PRK15064 329 FDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSENANIGYYAQDHAYDFENDLTLFDWMSQW 408 (530)
T ss_pred eCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEcccccccCCCCCcHHHHHHHh
Confidence 45667999999999999999999999999999999998763210 01134444311 11222
Q ss_pred ----------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001405 836 ----------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903 (1083)
Q Consensus 836 ----------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~ 903 (1083)
..++..++.. +......+++++++++...+++. +.+|.++||||||+|||+.....+.. ++. +
T Consensus 409 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~-~l~---~- 483 (530)
T PRK15064 409 RQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNM-ALE---K- 483 (530)
T ss_pred ccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHH-HHH---H-
Confidence 2344556653 45566678889988887777766 68999999999999999987766643 333 2
Q ss_pred CCcEEEEEeCchHHHH
Q 001405 904 KKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 904 ~~~~vl~~TH~~~l~~ 919 (1083)
.+.+||++||+.+++.
T Consensus 484 ~~~tvi~vsHd~~~~~ 499 (530)
T PRK15064 484 YEGTLIFVSHDREFVS 499 (530)
T ss_pred CCCEEEEEeCCHHHHH
Confidence 2459999999998765
No 315
>PLN03211 ABC transporter G-25; Provisional
Probab=99.56 E-value=5.6e-15 Score=182.81 Aligned_cols=147 Identities=18% Similarity=0.164 Sum_probs=101.5
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccc
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~ 833 (1083)
.++++.+++|+++++.+|++++|+|||||||||||++|++.... .+..+||+++.. .++
T Consensus 77 ~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lT 156 (659)
T PLN03211 77 QIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLT 156 (659)
T ss_pred cCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCC
Confidence 34567899999999999999999999999999999999875311 011235554421 122
Q ss_pred hHH------------------------HHHhhCCcchhHH-----hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 834 VLD------------------------GIYTRMGASDSIQ-----QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 834 ~~~------------------------~i~~~~~~~d~~~-----~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
+.+ .++..+|..+... .....+++++++...+++. +.+|++++|||||+|
T Consensus 157 V~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsg 236 (659)
T PLN03211 157 VRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSG 236 (659)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCC
Confidence 222 2333344332111 1234577777776666655 689999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH--HHHHhhh
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK--IADIKTK 923 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~--l~~l~~~ 923 (1083)
||+.....+. .++..+.+ .|.|||++||+++ +.+++|+
T Consensus 237 LD~~~~~~l~-~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~ 276 (659)
T PLN03211 237 LDATAAYRLV-LTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDS 276 (659)
T ss_pred cCHHHHHHHH-HHHHHHHh-CCCEEEEEecCCCHHHHHhhce
Confidence 9998888885 45566665 6899999999985 4555554
No 316
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.55 E-value=7.9e-15 Score=179.51 Aligned_cols=140 Identities=14% Similarity=0.112 Sum_probs=100.2
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hh--cccccccccc----ccchH------
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQ--VGSFVPASSA----ELHVL------ 835 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq--~g~~vp~~~~----~~~~~------ 835 (1083)
.++++.+++|++|++.+|++++|+||||||||||||+|+++... .. .-.|+|+... .+++.
T Consensus 331 ~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 410 (552)
T TIGR03719 331 GFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGG 410 (552)
T ss_pred EECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCceEEEEEeCCccccCCCCcHHHHHHhh
Confidence 34567899999999999999999999999999999999865311 10 0124444310 11222
Q ss_pred -------------HHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 836 -------------DGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 836 -------------~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
..++.++|..+ ......+++++++++...+++. +.+|+++||||||+|||+.....+. .++..+
T Consensus 411 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 489 (552)
T TIGR03719 411 LDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALE-EALLEF 489 (552)
T ss_pred ccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHC
Confidence 23455566643 3456678899998887777766 6899999999999999998777764 344332
Q ss_pred HhCCCcEEEEEeCchHHHH
Q 001405 901 LEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ +||++||+.+++.
T Consensus 490 ---~~-~viivsHd~~~~~ 504 (552)
T TIGR03719 490 ---AG-CAVVISHDRWFLD 504 (552)
T ss_pred ---CC-eEEEEeCCHHHHH
Confidence 23 7999999998764
No 317
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.55 E-value=9.6e-15 Score=178.85 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=100.5
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hh--ccccccccc----cccchHH-----
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQ--VGSFVPASS----AELHVLD----- 836 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq--~g~~vp~~~----~~~~~~~----- 836 (1083)
.++++.+++|++|++.+|++++|+||||||||||||+|+++... .. .-.|+|+.. ..+++.+
T Consensus 333 ~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~ 412 (556)
T PRK11819 333 SFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETVKLAYVDQSRDALDPNKTVWEEISGG 412 (556)
T ss_pred EECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCceEEEEEeCchhhcCCCCCHHHHHHhh
Confidence 34567899999999999999999999999999999999875321 10 012455432 1112222
Q ss_pred --------------HHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 837 --------------GIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 837 --------------~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
.++..++..+ ......+++++++++...+++. +.+|.++||||||+|+|+.....+. .++..+
T Consensus 413 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~-~~l~~~ 491 (556)
T PRK11819 413 LDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALE-EALLEF 491 (556)
T ss_pred cccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HHHHhC
Confidence 2445566543 3456678899998887777766 6899999999999999998877774 344332
Q ss_pred HhCCCcEEEEEeCchHHHH
Q 001405 901 LEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ ++|++||+.++..
T Consensus 492 ---~~-tvi~vtHd~~~~~ 506 (556)
T PRK11819 492 ---PG-CAVVISHDRWFLD 506 (556)
T ss_pred ---CC-eEEEEECCHHHHH
Confidence 24 7999999998664
No 318
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.55 E-value=1.4e-14 Score=179.88 Aligned_cols=139 Identities=16% Similarity=0.133 Sum_probs=98.3
Q ss_pred cccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------h---hccccccccc----cccchHHH---
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------A---QVGSFVPASS----AELHVLDG--- 837 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------a---q~g~~vp~~~----~~~~~~~~--- 837 (1083)
.|+++.+++|++|++.+|++++|+||||||||||||+|+++... . .+ .|+++.. ...++.+.
T Consensus 328 ~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~~~i-~y~~q~~~~l~~~~tv~e~l~~ 406 (635)
T PRK11147 328 QIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEV-AYFDQHRAELDPEKTVMDNLAE 406 (635)
T ss_pred EECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCCcEE-EEEeCcccccCCCCCHHHHHHh
Confidence 35667899999999999999999999999999999999875311 1 11 2444321 11122222
Q ss_pred ----------------HHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001405 838 ----------------IYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899 (1083)
Q Consensus 838 ----------------i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~ 899 (1083)
++.+++.. +......+++++++++...+++. +.+|.++||||||+|||+.....+. .+
T Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~-~~--- 482 (635)
T PRK11147 407 GKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLE-EL--- 482 (635)
T ss_pred hcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH-HH---
Confidence 33344543 34555677889998888777766 5789999999999999998765553 23
Q ss_pred HHhCCCcEEEEEeCchHHHH
Q 001405 900 LLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 900 l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.+ .+.+||++|||.+++.
T Consensus 483 l~~-~~~tvi~vSHd~~~~~ 501 (635)
T PRK11147 483 LDS-YQGTVLLVSHDRQFVD 501 (635)
T ss_pred HHh-CCCeEEEEECCHHHHH
Confidence 333 3559999999988764
No 319
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.55 E-value=1.7e-14 Score=152.75 Aligned_cols=132 Identities=16% Similarity=0.138 Sum_probs=88.0
Q ss_pred cccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-----------hc---c------------ccccccccc-c---
Q 001405 783 NDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA-----------QV---G------------SFVPASSAE-L--- 832 (1083)
Q Consensus 783 ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-----------q~---g------------~~vp~~~~~-~--- 832 (1083)
.++++++.+| +++|+|||||||||||++|+++.-.. .+ | .++++.... +
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 4577888889 99999999999999999998663110 00 0 122222111 1
Q ss_pred --chHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 001405 833 --HVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC-----TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK 905 (1083)
Q Consensus 833 --~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~-----~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~ 905 (1083)
..++.++.. .+........+++++++...+...+ .+++++|||||++|+|+.....+. .+++.+.+ +
T Consensus 93 ~~~~~~~~l~~---~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~-~~l~~~~~--~ 166 (197)
T cd03278 93 SQGDVSEIIEA---PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFA-RLLKEFSK--E 166 (197)
T ss_pred ehhhHHHHHhC---CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHH-HHHHHhcc--C
Confidence 112334444 2223344567778877776666542 566999999999999998877774 45555543 6
Q ss_pred cEEEEEeCchHHHHHh
Q 001405 906 CMVLFVTHYPKIADIK 921 (1083)
Q Consensus 906 ~~vl~~TH~~~l~~l~ 921 (1083)
.+||++||++++...+
T Consensus 167 ~tiIiitH~~~~~~~~ 182 (197)
T cd03278 167 TQFIVITHRKGTMEAA 182 (197)
T ss_pred CEEEEEECCHHHHhhc
Confidence 8899999999876543
No 320
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.54 E-value=1.6e-14 Score=145.47 Aligned_cols=155 Identities=19% Similarity=0.176 Sum_probs=103.8
Q ss_pred ecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhcccc----cccc
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSF----VPAS 828 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~----vp~~ 828 (1083)
..+++-..+||+||++++|+.-+|+||||+||||+|..|.+-+ -.|+.|.- -|.-
T Consensus 13 VsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtV 92 (249)
T COG4674 13 VSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTV 92 (249)
T ss_pred EEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCee
Confidence 3467888999999999999999999999999999999996432 23444421 0110
Q ss_pred ccccch-----------------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEe
Q 001405 829 SAELHV-----------------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVD 878 (1083)
Q Consensus 829 ~~~~~~-----------------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllD 878 (1083)
...+++ ++.++..+|..+......++++-+.++...|-.. +.+|.|+++|
T Consensus 93 fe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlD 172 (249)
T COG4674 93 FENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLD 172 (249)
T ss_pred hhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEec
Confidence 111111 2344555555554444444444444444333322 4899999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEE
Q 001405 879 ELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVS 934 (1083)
Q Consensus 879 Ep~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~ 934 (1083)
||.+|+...+....+ .++..|.. ++.|+++.||+++...... .|..+|-.
T Consensus 173 EPvAGMTd~Et~~ta-eLl~~la~--~hsilVVEHDM~Fvr~~A~---~VTVlh~G 222 (249)
T COG4674 173 EPVAGMTDAETEKTA-ELLKSLAG--KHSILVVEHDMGFVREIAD---KVTVLHEG 222 (249)
T ss_pred CccCCCcHHHHHHHH-HHHHHHhc--CceEEEEeccHHHHHHhhh---eeEEEecc
Confidence 999999988888885 56666654 7899999999998863332 26666643
No 321
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.54 E-value=1.1e-14 Score=180.69 Aligned_cols=140 Identities=14% Similarity=0.162 Sum_probs=93.6
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh--c---c----ccccccc---cccchH-----
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ--V---G----SFVPASS---AELHVL----- 835 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq--~---g----~~vp~~~---~~~~~~----- 835 (1083)
.+.++++.+++||+|++.+|++++|+||||||||||||+|+++..... + | .+++... ....++
T Consensus 10 s~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~ 89 (635)
T PRK11147 10 WLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGTVYDFVAE 89 (635)
T ss_pred EEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCCHHHHHHH
Confidence 334566789999999999999999999999999999999987532110 0 0 1122110 000000
Q ss_pred --------------------------------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHH
Q 001405 836 --------------------------------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYI 865 (1083)
Q Consensus 836 --------------------------------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~i 865 (1083)
..++..+|... ....+++++++++...+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~LSgGekqRv~L 167 (635)
T PRK11147 90 GIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLGLDP--DAALSSLSGGWLRKAAL 167 (635)
T ss_pred hhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCCC--CCchhhcCHHHHHHHHH
Confidence 11222233221 23457888888887777
Q ss_pred HHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 866 LRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 866 l~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
++. +.+|+|+||||||+|||+.....+ .+.|.+ .+.+||++||+.++..
T Consensus 168 AraL~~~P~lLLLDEPt~~LD~~~~~~L----~~~L~~-~~~tvlivsHd~~~l~ 217 (635)
T PRK11147 168 GRALVSNPDVLLLDEPTNHLDIETIEWL----EGFLKT-FQGSIIFISHDRSFIR 217 (635)
T ss_pred HHHHhcCCCEEEEcCCCCccCHHHHHHH----HHHHHh-CCCEEEEEeCCHHHHH
Confidence 766 688999999999999999766544 333333 3459999999988764
No 322
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.54 E-value=1.3e-14 Score=165.37 Aligned_cols=150 Identities=17% Similarity=0.182 Sum_probs=110.5
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------------hhcccc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------------AQVGSF 824 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------------aq~g~~ 824 (1083)
.+.|+.-...+||+|++.+|+|++|+|.||+|||||++++.++.-. .|.-..
T Consensus 11 tK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~L 90 (501)
T COG3845 11 TKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFML 90 (501)
T ss_pred EEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeecccc
Confidence 4556766778899999999999999999999999999999765311 111112
Q ss_pred ccccc--------------cccc------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCC
Q 001405 825 VPASS--------------AELH------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRG 883 (1083)
Q Consensus 825 vp~~~--------------~~~~------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~G 883 (1083)
||.-. ..+. -...+..++|..=+.....+..+.+++|...|+.. ..++.++||||||+-
T Consensus 91 v~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaV 170 (501)
T COG3845 91 VPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAV 170 (501)
T ss_pred ccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCccc
Confidence 22110 0000 02334555666666666677888899999999987 578999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH-HHHHhhhc
Q 001405 884 TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK-IADIKTKF 924 (1083)
Q Consensus 884 td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~-l~~l~~~~ 924 (1083)
|.|.+...++ .+++.|.+ .|++|||+||-++ ..+++|+.
T Consensus 171 LTP~E~~~lf-~~l~~l~~-~G~tIi~ITHKL~Ev~~iaDrv 210 (501)
T COG3845 171 LTPQEADELF-EILRRLAA-EGKTIIFITHKLKEVMAIADRV 210 (501)
T ss_pred CCHHHHHHHH-HHHHHHHH-CCCEEEEEeccHHHHHHhhCee
Confidence 9999999995 56777877 7999999999864 44566653
No 323
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.54 E-value=4.6e-14 Score=148.60 Aligned_cols=141 Identities=18% Similarity=0.147 Sum_probs=99.6
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------------hhcccccccccccc---------
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------AQVGSFVPASSAEL--------- 832 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------aq~g~~vp~~~~~~--------- 832 (1083)
....+++||||++.+|+.++|+|+||||||||||+|+++... +-..+|-|.-...-
T Consensus 38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~~~~ 117 (249)
T COG1134 38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRGLIL 117 (249)
T ss_pred ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHHHHh
Confidence 356789999999999999999999999999999999876422 11112222211100
Q ss_pred --------chHHHHHhhCCcchhHHhchhhhHHHHHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001405 833 --------HVLDGIYTRMGASDSIQQGRSTFLEELNE-ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903 (1083)
Q Consensus 833 --------~~~~~i~~~~~~~d~~~~~~stf~~e~~~-~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~ 903 (1083)
..++.|...-.+.+.+...+.+++.+|.- ++..+....+|+++||||..+--|+.-...-... ++.+.+
T Consensus 118 G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~r-l~e~~~- 195 (249)
T COG1134 118 GLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLER-LNELVE- 195 (249)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHH-HHHHHH-
Confidence 01234444444567777888899988865 4455555789999999999999998766555343 344444
Q ss_pred CCcEEEEEeCchHHHH
Q 001405 904 KKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 904 ~~~~vl~~TH~~~l~~ 919 (1083)
++.++|++||+++...
T Consensus 196 ~~~tiv~VSHd~~~I~ 211 (249)
T COG1134 196 KNKTIVLVSHDLGAIK 211 (249)
T ss_pred cCCEEEEEECCHHHHH
Confidence 4789999999998764
No 324
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.53 E-value=2.6e-14 Score=167.43 Aligned_cols=154 Identities=16% Similarity=0.133 Sum_probs=113.1
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------------hhcccccccccc-
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM----------------------------AQVGSFVPASSA- 830 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l----------------------------aq~g~~vp~~~~- 830 (1083)
.+++||||++.+|++++|+|.+||||||+.+.|.++.-. ....+++|++..
T Consensus 23 ~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~ 102 (539)
T COG1123 23 PAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMT 102 (539)
T ss_pred eeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCchh
Confidence 578899999999999999999999999999999754210 011134444311
Q ss_pred c----cch----------------------HHHHHhhCCcchhHHh--chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 831 E----LHV----------------------LDGIYTRMGASDSIQQ--GRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 831 ~----~~~----------------------~~~i~~~~~~~d~~~~--~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
. +.+ ..+++..+|..+.... ....|+++|+|...|+.+ +.+|+|+|+||||
T Consensus 103 slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPT 182 (539)
T COG1123 103 SLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPT 182 (539)
T ss_pred hcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCc
Confidence 0 111 1235677777776665 667899999998877766 7899999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-HhhhccCCcceeEEEEEe
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTKFTGSVGTYHVSYLT 937 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~~~~~v~~~~~~~~~ 937 (1083)
.+||+.....|. .+++.+.++.|.++||+|||+++.. ++|+. +..|+=...+
T Consensus 183 TaLDvt~q~qIL-~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv---~Vm~~G~iVE 235 (539)
T COG1123 183 TALDVTTQAQIL-DLLKDLQRELGMAVLFITHDLGVVAELADRV---VVMYKGEIVE 235 (539)
T ss_pred cccCHHHHHHHH-HHHHHHHHHcCcEEEEEcCCHHHHHHhcCeE---EEEECCEEEE
Confidence 999999888885 5666677668999999999998875 55543 4444444443
No 325
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.53 E-value=1.7e-14 Score=176.64 Aligned_cols=139 Identities=15% Similarity=0.099 Sum_probs=95.2
Q ss_pred ccc-ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------hcccccccccc---ccchHHHHH--
Q 001405 775 ILL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------QVGSFVPASSA---ELHVLDGIY-- 839 (1083)
Q Consensus 775 ~~~-~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------q~g~~vp~~~~---~~~~~~~i~-- 839 (1083)
.|+ ++.+++|++|++++|++++|+||||||||||||+|+++.... ..-.|+|+... .+++.+.+.
T Consensus 13 ~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~~~~i~~v~Q~~~~~~~~tv~e~i~~~ 92 (552)
T TIGR03719 13 VVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEG 92 (552)
T ss_pred ecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEeccCCCCCCCcHHHHHHHh
Confidence 344 567899999999999999999999999999999998764211 11124554321 223333221
Q ss_pred -------------------------------------------------------hhCCcchhHHhchhhhHHHHHHHHH
Q 001405 840 -------------------------------------------------------TRMGASDSIQQGRSTFLEELNEASY 864 (1083)
Q Consensus 840 -------------------------------------------------------~~~~~~d~~~~~~stf~~e~~~~~~ 864 (1083)
..+|.. ......+++++++++...
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~LSgGqkqrv~ 171 (552)
T TIGR03719 93 VAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP-PWDADVTKLSGGERRRVA 171 (552)
T ss_pred hHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC-cccCchhhcCHHHHHHHH
Confidence 111111 112345678888888777
Q ss_pred HHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 865 ILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 865 il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+++. +.+|+++||||||+|||+.....+.. + |.+ .+.+||++||+.++..
T Consensus 172 la~al~~~p~lLLLDEPt~~LD~~~~~~l~~-~---L~~-~~~tvIiisHd~~~~~ 222 (552)
T TIGR03719 172 LCRLLLSKPDMLLLDEPTNHLDAESVAWLEQ-H---LQE-YPGTVVAVTHDRYFLD 222 (552)
T ss_pred HHHHHhcCCCEEEEcCCCCCCChHHHHHHHH-H---HHh-CCCeEEEEeCCHHHHH
Confidence 7766 68899999999999999987766533 3 333 3459999999998764
No 326
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.53 E-value=2.5e-14 Score=170.69 Aligned_cols=141 Identities=18% Similarity=0.166 Sum_probs=97.8
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh------hc---ccccccccc---ccchH-----
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------QV---GSFVPASSA---ELHVL----- 835 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la------q~---g~~vp~~~~---~~~~~----- 835 (1083)
...++++.++++++|++.+|+.+||+|+||+|||||||+|++..... .- -.|++++.. ..++.
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~~v~~l~Q~~~~~~~~tv~~~v~~ 89 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGLRVGYLSQEPPLDPEKTVLDYVIE 89 (530)
T ss_pred EEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCceEEEeCCCCCcCCCccHHHHHHh
Confidence 34467889999999999999999999999999999999998543110 00 012222210 00111
Q ss_pred ----------------------------------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-
Q 001405 836 ----------------------------------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN- 868 (1083)
Q Consensus 836 ----------------------------------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~- 868 (1083)
..++..+|..+. ...+++++++.+....+++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~-~~~~~~LSGG~r~Rv~LA~aL 168 (530)
T COG0488 90 GFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE-DRPVSSLSGGWRRRVALARAL 168 (530)
T ss_pred hhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc-cCchhhcCHHHHHHHHHHHHH
Confidence 123334455444 56678899988877776665
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+|+++||||||+.||.. +|.| +-++|.+-.| ++|+||||-.+.+
T Consensus 169 ~~~pDlLLLDEPTNHLD~~---~i~W-Le~~L~~~~g-tviiVSHDR~FLd 214 (530)
T COG0488 169 LEEPDLLLLDEPTNHLDLE---SIEW-LEDYLKRYPG-TVIVVSHDRYFLD 214 (530)
T ss_pred hcCCCEEEEcCCCcccCHH---HHHH-HHHHHHhCCC-cEEEEeCCHHHHH
Confidence 5899999999999999964 3322 4556665456 9999999988765
No 327
>PLN03073 ABC transporter F family; Provisional
Probab=99.53 E-value=2.3e-14 Score=178.41 Aligned_cols=136 Identities=15% Similarity=0.114 Sum_probs=97.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------hccccccccc-cccc-------------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------QVGSFVPASS-AELH------------- 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------q~g~~vp~~~-~~~~------------- 833 (1083)
...+++|++|++.+|++++|+||||||||||||+|+++.... .+ .|+|+.. ..+.
T Consensus 521 ~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~~~i-gyv~Q~~~~~l~~~~~~~~~~~~~~ 599 (718)
T PLN03073 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAKVRM-AVFSQHHVDGLDLSSNPLLYMMRCF 599 (718)
T ss_pred CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCceeE-EEEeccccccCCcchhHHHHHHHhc
Confidence 356899999999999999999999999999999998764211 11 2334321 0000
Q ss_pred ------hHHHHHhhCCcch-hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC
Q 001405 834 ------VLDGIYTRMGASD-SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK 905 (1083)
Q Consensus 834 ------~~~~i~~~~~~~d-~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~ 905 (1083)
....++..+|..+ ......+.+++++++...+++. +.+|.++||||||+|||+.....+. +.+.+ .+
T Consensus 600 ~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~----~~L~~-~~ 674 (718)
T PLN03073 600 PGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALI----QGLVL-FQ 674 (718)
T ss_pred CCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHH----HHHHH-cC
Confidence 1123456667653 4556678899988887777765 6899999999999999998766653 33333 23
Q ss_pred cEEEEEeCchHHHH
Q 001405 906 CMVLFVTHYPKIAD 919 (1083)
Q Consensus 906 ~~vl~~TH~~~l~~ 919 (1083)
.++|++||+.++..
T Consensus 675 gtvIivSHd~~~i~ 688 (718)
T PLN03073 675 GGVLMVSHDEHLIS 688 (718)
T ss_pred CEEEEEECCHHHHH
Confidence 49999999998765
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.52 E-value=1.4e-13 Score=168.54 Aligned_cols=142 Identities=20% Similarity=0.218 Sum_probs=96.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++.+++|++|++++|+.++|+||||||||||++++++... +.+.-.++|++..- -++.
T Consensus 330 ~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~ 409 (544)
T TIGR01842 330 KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVA 409 (544)
T ss_pred CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHH
Confidence 3579999999999999999999999999999999986431 11222355554211 1222
Q ss_pred HHHH---------------hhCCc-----------chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGIY---------------TRMGA-----------SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i~---------------~~~~~-----------~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+++. ...++ ...+..+...+++++++...+++. +.+|+++||||||+|+|+..
T Consensus 410 ~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~ 489 (544)
T TIGR01842 410 ENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEG 489 (544)
T ss_pred HHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHH
Confidence 2221 11111 111222334577777777766665 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
...+... +..+.. .+.|+|++||+.+....+
T Consensus 490 ~~~i~~~-l~~~~~-~~~tvi~ith~~~~~~~~ 520 (544)
T TIGR01842 490 EQALANA-IKALKA-RGITVVVITHRPSLLGCV 520 (544)
T ss_pred HHHHHHH-HHHHhh-CCCEEEEEeCCHHHHHhC
Confidence 7777544 444443 478999999999866543
No 329
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.52 E-value=2.3e-13 Score=168.26 Aligned_cols=141 Identities=18% Similarity=0.145 Sum_probs=97.2
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~~ 836 (1083)
..|++|++|++++|+.++|+|+||||||||+|.|+++.- +.+.-+|+|++..- -++.+
T Consensus 348 ~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~ 427 (588)
T PRK13657 348 RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIED 427 (588)
T ss_pred CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHH
Confidence 569999999999999999999999999999999986531 12233566665211 11222
Q ss_pred HH---------------HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GI---------------YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i---------------~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++ ....+..+. +..+-..++++.++...+++. +.+|+++||||||+++|+...
T Consensus 428 Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~ 507 (588)
T PRK13657 428 NIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETE 507 (588)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 21 122222222 222223477776666666655 689999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+...+ ..+. .++|+|++||+++....+|
T Consensus 508 ~~i~~~l-~~~~--~~~tvIiitHr~~~~~~~D 537 (588)
T PRK13657 508 AKVKAAL-DELM--KGRTTFIIAHRLSTVRNAD 537 (588)
T ss_pred HHHHHHH-HHHh--cCCEEEEEEecHHHHHhCC
Confidence 8775544 3333 4789999999998776544
No 330
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.51 E-value=3.4e-13 Score=161.09 Aligned_cols=136 Identities=20% Similarity=0.197 Sum_probs=94.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hh--cccccccccccc----chH----------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQ--VGSFVPASSAEL----HVL---------- 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq--~g~~vp~~~~~~----~~~---------- 835 (1083)
+.++.+++|.+.+|+.++|+||||+|||||||+|++..-. ++ ..+|+++....+ +++
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~ 414 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEELSEGFPDG 414 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEEEEEehhhhcCccCcHHHHHHhhCccc
Confidence 5899999999999999999999999999999999643211 10 012334332211 122
Q ss_pred -----HHHHhhCCc-chhHHhchhhhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 001405 836 -----DGIYTRMGA-SDSIQQGRSTFLEELNEASYILR-NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMV 908 (1083)
Q Consensus 836 -----~~i~~~~~~-~d~~~~~~stf~~e~~~~~~il~-~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~v 908 (1083)
...+.+++. .+.....+.+++++.+....++. .+.+|.|+||||||+.||.....++..++ .+ -.-+|
T Consensus 415 ~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL----~~-f~Gtv 489 (530)
T COG0488 415 DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEAL----LD-FEGTV 489 (530)
T ss_pred cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHH----Hh-CCCeE
Confidence 234455554 34455667788877665554444 36889999999999999997766664443 33 45689
Q ss_pred EEEeCchHHHH
Q 001405 909 LFVTHYPKIAD 919 (1083)
Q Consensus 909 l~~TH~~~l~~ 919 (1083)
|+||||..+.+
T Consensus 490 l~VSHDr~Fl~ 500 (530)
T COG0488 490 LLVSHDRYFLD 500 (530)
T ss_pred EEEeCCHHHHH
Confidence 99999998875
No 331
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.51 E-value=1.8e-13 Score=170.43 Aligned_cols=139 Identities=14% Similarity=0.099 Sum_probs=97.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------hcccccccccc--ccchH-----------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------QVGSFVPASSA--ELHVL----------- 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------q~g~~vp~~~~--~~~~~----------- 835 (1083)
++.+++|++|++++|++++|+||||||||||+|+|+++.... +...|+|++.. .-++.
T Consensus 464 ~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~ 543 (659)
T TIGR00954 464 GDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPAKGKLFYVPQRPYMTLGTLRDQIIYPDSSED 543 (659)
T ss_pred CCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecCCCcEEEECCCCCCCCcCHHHHHhcCCChhh
Confidence 457999999999999999999999999999999998763211 11134554421 00111
Q ss_pred -----------HHHHhhCCcchhHHhc---------hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 836 -----------DGIYTRMGASDSIQQG---------RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 836 -----------~~i~~~~~~~d~~~~~---------~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
..++..++..+.+... ...+++++++...+++. +.+|+++||||||+|+|+.....+.
T Consensus 544 ~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~- 622 (659)
T TIGR00954 544 MKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMY- 622 (659)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHH-
Confidence 2234445554433321 24688888887777766 6899999999999999997665553
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
+.+.+ .|+|+|++||+.++...+
T Consensus 623 ---~~l~~-~~~tvI~isH~~~~~~~~ 645 (659)
T TIGR00954 623 ---RLCRE-FGITLFSVSHRKSLWKYH 645 (659)
T ss_pred ---HHHHH-cCCEEEEEeCchHHHHhC
Confidence 33344 589999999999876543
No 332
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.51 E-value=2.2e-13 Score=166.77 Aligned_cols=144 Identities=14% Similarity=0.108 Sum_probs=101.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc-----
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL----- 832 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~----- 832 (1083)
+.++++|++|++++|+.++|+||||||||||+++|++..- +.+.-.++|++..-+
T Consensus 335 ~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 414 (547)
T PRK10522 335 NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLG 414 (547)
T ss_pred CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhc
Confidence 3569999999999999999999999999999999986421 112223555542111
Q ss_pred --------chHHHHHhhCCcchhHHhc-----hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001405 833 --------HVLDGIYTRMGASDSIQQG-----RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLD 898 (1083)
Q Consensus 833 --------~~~~~i~~~~~~~d~~~~~-----~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~ 898 (1083)
......+..++..+.+..+ -..+++++++...+++. +.+|+++||||||+|+|+.....+...+.+
T Consensus 415 ~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~ 494 (547)
T PRK10522 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLP 494 (547)
T ss_pred cccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 0122244455554443321 13677777777666665 689999999999999999988887666655
Q ss_pred HHHhCCCcEEEEEeCchHHHHHhh
Q 001405 899 YLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 899 ~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.+.+ .++|+|++||+++....+|
T Consensus 495 ~~~~-~~~tvi~itH~~~~~~~~d 517 (547)
T PRK10522 495 LLQE-MGKTIFAISHDDHYFIHAD 517 (547)
T ss_pred HHHh-CCCEEEEEEechHHHHhCC
Confidence 5443 4789999999987766544
No 333
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=6.8e-14 Score=136.46 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=104.7
Q ss_pred eecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh---------------------------hccccc
Q 001405 773 DTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA---------------------------QVGSFV 825 (1083)
Q Consensus 773 ~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---------------------------q~g~~v 825 (1083)
...||...++-||+|+.+.|+.++++||+|+|||||||.+.++.... ..|..+
T Consensus 9 n~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvf 88 (242)
T COG4161 9 NCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVF 88 (242)
T ss_pred ccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhh
Confidence 44577888999999999999999999999999999999987654211 112111
Q ss_pred cccc--cccchH----------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCC
Q 001405 826 PASS--AELHVL----------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDEL 880 (1083)
Q Consensus 826 p~~~--~~~~~~----------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp 880 (1083)
.+.. ..+++. ..++.++...+......-.++++.++...|.+. +.+|.++++|||
T Consensus 89 qqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdep 168 (242)
T COG4161 89 QQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEP 168 (242)
T ss_pred hhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCc
Confidence 1100 011111 224455555555544455567777777777766 689999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 881 GRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 881 ~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|+.+||+-...+ -.|++.|.. .|.|-+++||..+.+.
T Consensus 169 taaldpeitaqv-v~iikel~~-tgitqvivthev~va~ 205 (242)
T COG4161 169 TAALDPEITAQI-VSIIKELAE-TGITQVIVTHEVEVAR 205 (242)
T ss_pred ccccCHHHHHHH-HHHHHHHHh-cCceEEEEEeehhHHH
Confidence 999999877777 467888877 8999999999998886
No 334
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.51 E-value=5.5e-14 Score=174.74 Aligned_cols=142 Identities=20% Similarity=0.230 Sum_probs=104.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------hhccccccccccc---
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------AQVGSFVPASSAE--- 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------aq~g~~vp~~~~~--- 831 (1083)
..+++|++|++.+|++++|+||||||||||+|+|+++... .+...|++.....
T Consensus 21 ~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 100 (648)
T PRK10535 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSH 100 (648)
T ss_pred eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCC
Confidence 4689999999999999999999999999999999865310 1122344443211
Q ss_pred cchH---------------------HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 832 LHVL---------------------DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~---------------------~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+++. ..++..+|..+.+......+++++++...+++. +.+|+++|||||++|+|+...
T Consensus 101 ~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~ 180 (648)
T PRK10535 101 LTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSG 180 (648)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 1111 223445566555566667888888887777766 688999999999999999887
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+ ..+++.+.+ .+.++|++||+.++...++
T Consensus 181 ~~l-~~ll~~l~~-~g~tilivsH~~~~~~~~d 211 (648)
T PRK10535 181 EEV-MAILHQLRD-RGHTVIIVTHDPQVAAQAE 211 (648)
T ss_pred HHH-HHHHHHHHh-cCCEEEEECCCHHHHHhCC
Confidence 777 455666665 5899999999999876543
No 335
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.50 E-value=1.6e-13 Score=169.58 Aligned_cols=142 Identities=17% Similarity=0.101 Sum_probs=98.9
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++++++|++|++++|+.++|+||||||||||+|.|+++.- +.+.-+|+|++..- -++.
T Consensus 355 ~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 434 (582)
T PRK11176 355 EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIA 434 (582)
T ss_pred CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHH
Confidence 3679999999999999999999999999999999986531 12233566665211 1122
Q ss_pred HHH----------------HhhCCcchhHH---hch--------hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 836 DGI----------------YTRMGASDSIQ---QGR--------STFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 836 ~~i----------------~~~~~~~d~~~---~~~--------stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
++| ....|..+.+. .|. ..++++.++...+++. +.+|+++||||||+++|+.
T Consensus 435 ~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~ 514 (582)
T PRK11176 435 NNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTE 514 (582)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHH
Confidence 222 12222222221 112 3477777777666665 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
....+...+.+ +. .++|+|++||+++....+|
T Consensus 515 t~~~i~~~l~~-~~--~~~tvI~VtHr~~~~~~~D 546 (582)
T PRK11176 515 SERAIQAALDE-LQ--KNRTSLVIAHRLSTIEKAD 546 (582)
T ss_pred HHHHHHHHHHH-Hh--CCCEEEEEecchHHHHhCC
Confidence 88887655543 43 3799999999998776554
No 336
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.49 E-value=2.6e-13 Score=167.08 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=101.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~--~~~~ 836 (1083)
..+++|+++++++|+.++|+|+||||||||+|.+.++- -+.+.-++||++..-+ ++.|
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~e 565 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRE 565 (709)
T ss_pred cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHH
Confidence 47999999999999999999999999999999997542 1233334677653211 1111
Q ss_pred ------------HHH---hhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 ------------GIY---TRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ------------~i~---~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++. ..-|+.+.+. ++-+.++++.+|+..++++ ..+|+++||||||+++|+..-
T Consensus 566 Ni~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE 645 (709)
T COG2274 566 NIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETE 645 (709)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHH
Confidence 221 1223333333 4445678888888777776 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..+...+.+ +. .|+|+|++||.+.....+|+
T Consensus 646 ~~I~~~L~~-~~--~~~T~I~IaHRl~ti~~adr 676 (709)
T COG2274 646 AIILQNLLQ-IL--QGRTVIIIAHRLSTIRSADR 676 (709)
T ss_pred HHHHHHHHH-Hh--cCCeEEEEEccchHhhhccE
Confidence 766554444 33 47999999999988776543
No 337
>PLN03073 ABC transporter F family; Provisional
Probab=99.49 E-value=8.1e-14 Score=173.51 Aligned_cols=143 Identities=15% Similarity=0.159 Sum_probs=95.3
Q ss_pred eeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--Hhhcc--ccccccc--cccch-----------
Q 001405 772 LDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--MAQVG--SFVPASS--AELHV----------- 834 (1083)
Q Consensus 772 l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--laq~g--~~vp~~~--~~~~~----------- 834 (1083)
+...|+++.+++|++|++.+|++++|+||||||||||||+|++..+ ....| .++++.. ..++.
T Consensus 183 ls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~ 262 (718)
T PLN03073 183 FSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIER 262 (718)
T ss_pred EEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHH
Confidence 3445667779999999999999999999999999999999975310 00000 0111100 00000
Q ss_pred -------------------------------------------------------------HHHHHhhCCcc-hhHHhch
Q 001405 835 -------------------------------------------------------------LDGIYTRMGAS-DSIQQGR 852 (1083)
Q Consensus 835 -------------------------------------------------------------~~~i~~~~~~~-d~~~~~~ 852 (1083)
...++..+|.. +......
T Consensus 263 ~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~~~~~~~ 342 (718)
T PLN03073 263 TQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKAT 342 (718)
T ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChHHHhCch
Confidence 01122233332 2234456
Q ss_pred hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 853 STFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 853 stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.++++++++...+++. +.+|+++||||||+|||+.....+ .+.|.+ .+.++|++||+.++..
T Consensus 343 ~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l----~~~L~~-~~~tviivsHd~~~l~ 405 (718)
T PLN03073 343 KTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWL----ETYLLK-WPKTFIVVSHAREFLN 405 (718)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHH----HHHHHH-cCCEEEEEECCHHHHH
Confidence 7889998888777776 578999999999999999765544 334443 4789999999987654
No 338
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.49 E-value=5.7e-14 Score=150.81 Aligned_cols=141 Identities=13% Similarity=0.068 Sum_probs=107.5
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccccc-------ccccchHHHHHhhCCcch-hHHhc
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS-------SAELHVLDGIYTRMGASD-SIQQG 851 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~-------~~~~~~~~~i~~~~~~~d-~~~~~ 851 (1083)
.+++||||++.+|++++|+|.+||||||+-|+|.++.-....-.++-.. ......+..++..+|... .+.+.
T Consensus 27 ~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ry 106 (268)
T COG4608 27 KAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRY 106 (268)
T ss_pred EEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcC
Confidence 6789999999999999999999999999999997664322111111111 111223456777888654 55666
Q ss_pred hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 852 RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 852 ~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
...|+++.+|...|+++ +.+|+++++|||++.||......+ ..++..+.++.|.+.+|+|||+..+...
T Consensus 107 PhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqI-lnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 107 PHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQI-LNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHH-HHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 77899888887777776 689999999999999999877777 4566777776899999999999988743
No 339
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.1e-12 Score=150.68 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=104.6
Q ss_pred cccc-ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-------------------HHhhccccccccccccc--
Q 001405 776 LLDN-FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-------------------IMAQVGSFVPASSAELH-- 833 (1083)
Q Consensus 776 ~~~~-~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-------------------~laq~g~~vp~~~~~~~-- 833 (1083)
++++ .|++++||++++|+-++|+|+|||||||+||++...- -+.+..++||++..-+.
T Consensus 361 y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndT 440 (591)
T KOG0057|consen 361 YGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDT 440 (591)
T ss_pred eCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhheeEeCCcccccchh
Confidence 4444 5999999999999999999999999999999996431 25566778998753221
Q ss_pred h---------------HHHHHhhCCcchhHHhc---hhh--------hHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCH
Q 001405 834 V---------------LDGIYTRMGASDSIQQG---RST--------FLEELNEASYILR-NCTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 834 ~---------------~~~i~~~~~~~d~~~~~---~st--------f~~e~~~~~~il~-~~~~~sLvllDEp~~Gtd~ 886 (1083)
+ +-++-.+.|..|.+.+- .+| .+++.+|...+++ .+.+++++++||||+.||.
T Consensus 441 Il~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~ 520 (591)
T KOG0057|consen 441 ILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDS 520 (591)
T ss_pred HHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccch
Confidence 1 11233455665555443 222 3344444444444 4789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..-..+...+... ..+.|+|++-|++++..-+|+
T Consensus 521 ~TE~~i~~~i~~~---~~~rTvI~IvH~l~ll~~~Dk 554 (591)
T KOG0057|consen 521 ETEREILDMIMDV---MSGRTVIMIVHRLDLLKDFDK 554 (591)
T ss_pred hhHHHHHHHHHHh---cCCCeEEEEEecchhHhcCCE
Confidence 9888887777762 258899999999998865443
No 340
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.48 E-value=7.2e-13 Score=161.87 Aligned_cols=141 Identities=16% Similarity=0.141 Sum_probs=98.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~~ 836 (1083)
+++++|++|++++|+.++|+||||||||||+|.|+++.- +.+.-++||++..- -++.+
T Consensus 335 ~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~ 414 (529)
T TIGR02857 335 APALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAE 414 (529)
T ss_pred cccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHH
Confidence 479999999999999999999999999999999975421 12223456655211 11222
Q ss_pred H---------------HHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 G---------------IYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~---------------i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+ .....++.+.+. .+-..++++.++...+++. +.+|+++||||||+++|+...
T Consensus 415 Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 415 NIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred HHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 2 222333333222 2234577888887777766 688999999999999999988
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+...+.+ +. .++|+|++||+++....+|
T Consensus 495 ~~i~~~l~~-~~--~~~t~i~itH~~~~~~~~d 524 (529)
T TIGR02857 495 ALVTEALRA-LA--QGRTVLLVTHRLALAERAD 524 (529)
T ss_pred HHHHHHHHH-hc--CCCEEEEEecCHHHHHhCC
Confidence 888654443 33 4799999999998776543
No 341
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.48 E-value=2.8e-13 Score=138.84 Aligned_cols=140 Identities=18% Similarity=0.175 Sum_probs=97.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-----------------ccc---ccccc-----cccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-----------------VGS---FVPAS-----SAEL 832 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-----------------~g~---~vp~~-----~~~~ 832 (1083)
.+.+++++++++..|+++.|+|.||||||||++.|++-..+.. -.. -|.++ ...+
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 5789999999999999999999999999999999985432110 000 00000 0112
Q ss_pred chHHH---------------------------HHhh--CCcchhHHhchhhhHHHHHHH-HHHHHhCCCCcEEEEeCCCC
Q 001405 833 HVLDG---------------------------IYTR--MGASDSIQQGRSTFLEELNEA-SYILRNCTAQSLVIVDELGR 882 (1083)
Q Consensus 833 ~~~~~---------------------------i~~~--~~~~d~~~~~~stf~~e~~~~-~~il~~~~~~sLvllDEp~~ 882 (1083)
++.++ -+++ +|....+...+..|+++.+|. +-++..+.+|.+++|||=|+
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTA 177 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTA 177 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhh
Confidence 22111 1222 234455555566677776665 44555589999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.|||..+..+....-+. .++.+.|.+++||+++-+
T Consensus 178 ALDPkta~~vm~lT~ki-V~~~klTtlMVTHnm~~A 212 (263)
T COG1101 178 ALDPKTAEFVMELTAKI-VEEHKLTTLMVTHNMEDA 212 (263)
T ss_pred cCCcchHHHHHHHHHHH-HHhcCCceEEEeccHHHH
Confidence 99999888886655554 444789999999999876
No 342
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.48 E-value=6e-13 Score=164.20 Aligned_cols=142 Identities=13% Similarity=0.110 Sum_probs=99.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++++++|++|++++|+.++|+|+||+|||||+|.|+++.- +.+.-+|+|++..- -++.
T Consensus 344 ~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~ 423 (571)
T TIGR02203 344 DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423 (571)
T ss_pred CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHH
Confidence 3579999999999999999999999999999999986531 12223466655211 1111
Q ss_pred H----------------HHHhhCCcchhHHh-----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 836 D----------------GIYTRMGASDSIQQ-----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 836 ~----------------~i~~~~~~~d~~~~-----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
+ ..+...|+.+.+.. +-..++++.++...+++. +.+|+++||||||+++|+.
T Consensus 424 ~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~ 503 (571)
T TIGR02203 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNE 503 (571)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 1 22333343333221 223577777776666665 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
....+...+ ..+. .++|+|++||++.+...+|
T Consensus 504 ~~~~i~~~L-~~~~--~~~tiIiitH~~~~~~~~D 535 (571)
T TIGR02203 504 SERLVQAAL-ERLM--QGRTTLVIAHRLSTIEKAD 535 (571)
T ss_pred HHHHHHHHH-HHHh--CCCEEEEEehhhHHHHhCC
Confidence 888885544 4443 4789999999998776554
No 343
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.48 E-value=7.5e-13 Score=162.83 Aligned_cols=140 Identities=14% Similarity=0.055 Sum_probs=95.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--chH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~~ 835 (1083)
+.++++|++|++++|++++|+||||||||||+++|+++.- +.+.-.++|++..-+ ++.
T Consensus 327 ~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~ 406 (569)
T PRK10789 327 DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVA 406 (569)
T ss_pred CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHH
Confidence 3579999999999999999999999999999999986531 112224555542111 122
Q ss_pred HHH---------------HhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGI---------------YTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i---------------~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+++ ....+..+.+. .+...+++++++...+++. +.+|+++||||||+|+|+..
T Consensus 407 ~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~ 486 (569)
T PRK10789 407 NNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRT 486 (569)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHH
Confidence 222 22223322221 1223467777776666655 78999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
...+...+ ..+. .++|+|++||+++....
T Consensus 487 ~~~i~~~l-~~~~--~~~tii~itH~~~~~~~ 515 (569)
T PRK10789 487 EHQILHNL-RQWG--EGRTVIISAHRLSALTE 515 (569)
T ss_pred HHHHHHHH-HHHh--CCCEEEEEecchhHHHc
Confidence 88775544 4443 47899999999876553
No 344
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.48 E-value=6.9e-13 Score=167.08 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=99.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
.+++++|++|++++|+.++|+||||||||||+|+|+++.- +.+.-++||++..- -++.
T Consensus 477 ~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~ 556 (694)
T TIGR03375 477 ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLR 556 (694)
T ss_pred CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHH
Confidence 3579999999999999999999999999999999985421 12233466665211 1122
Q ss_pred HH---------------HHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DG---------------IYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~---------------i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++ .....++.+.+. .+-..++++.++...+++. +.+|+++||||||+++|+..
T Consensus 557 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 557 DNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 22 222233333222 2224577777777766665 68999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
...+...+ ..+. .++|+|++||.++....+|
T Consensus 637 e~~i~~~l-~~~~--~~~T~iiItHrl~~~~~~D 667 (694)
T TIGR03375 637 EERFKDRL-KRWL--AGKTLVLVTHRTSLLDLVD 667 (694)
T ss_pred HHHHHHHH-HHHh--CCCEEEEEecCHHHHHhCC
Confidence 88886554 4443 3799999999998776544
No 345
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.47 E-value=8.2e-13 Score=163.14 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=96.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhccccccccccc--cchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSAE--LHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~~--~~~~~ 836 (1083)
+++++|++|++++|+.++|+||||||||||+|+|+++.-. .+.-+|+|++..- -++.+
T Consensus 353 ~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~ 432 (576)
T TIGR02204 353 QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVME 432 (576)
T ss_pred CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHH
Confidence 5799999999999999999999999999999999865311 1223456655211 11222
Q ss_pred HH---------------HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GI---------------YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i---------------~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++ ....++.+. +..+-..++++.++...+++. +.+|+++|+||||+++|+...
T Consensus 433 Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 433 NIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred HHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 22 222222221 222334577766666666655 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+.. .+..+. .++|+|++||+++....+|
T Consensus 513 ~~i~~-~l~~~~--~~~t~IiitH~~~~~~~~d 542 (576)
T TIGR02204 513 QLVQQ-ALETLM--KGRTTLIIAHRLATVLKAD 542 (576)
T ss_pred HHHHH-HHHHHh--CCCEEEEEecchHHHHhCC
Confidence 66644 444443 4789999999998766443
No 346
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.47 E-value=7.3e-13 Score=164.00 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=97.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~~~ 836 (1083)
..+++|++|++++|+.++|+|+||||||||+|.|+++.- +.+.-+|+|++..-+ ++.+
T Consensus 354 ~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~ 433 (592)
T PRK10790 354 NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLA 433 (592)
T ss_pred CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHH
Confidence 569999999999999999999999999999999975431 223335667653211 1111
Q ss_pred --------------HHHhhCCcchhHHh-----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSIQQ-----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~~-----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+.....|+.+.+.. +-..++++.++...+++. +.+++++||||||+++|+....
T Consensus 434 NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~ 513 (592)
T PRK10790 434 NVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQ 513 (592)
T ss_pred HHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHH
Confidence 22333444433322 223477776666666665 6899999999999999998887
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.+...+ ..+. .++|+|++||.++....+
T Consensus 514 ~i~~~l-~~~~--~~~tvIivtHr~~~l~~~ 541 (592)
T PRK10790 514 AIQQAL-AAVR--EHTTLVVIAHRLSTIVEA 541 (592)
T ss_pred HHHHHH-HHHh--CCCEEEEEecchHHHHhC
Confidence 775544 3343 368999999999776544
No 347
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.47 E-value=5.8e-13 Score=164.17 Aligned_cols=140 Identities=14% Similarity=0.137 Sum_probs=95.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc--ccchHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA--ELHVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~--~~~~~~ 836 (1083)
+.+++|++|++++|++++|+||||||||||+++|++..- +.+.-+++|++.. .-++.+
T Consensus 348 ~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 427 (585)
T TIGR01192 348 SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRE 427 (585)
T ss_pred CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHH
Confidence 568999999999999999999999999999999975431 1122235555421 112222
Q ss_pred HH---------------HhhCCcch-----------hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 837 GI---------------YTRMGASD-----------SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 ~i---------------~~~~~~~d-----------~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
++ ....+..+ .+..+...+++++++...+++. +.+|+++||||||+|+|+...
T Consensus 428 Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 428 NIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred HHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 22 11112222 1222233467777776666655 789999999999999999888
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+.. .+..+. .+.|+|++||+++....+
T Consensus 508 ~~i~~-~l~~~~--~~~tvI~isH~~~~~~~~ 536 (585)
T TIGR01192 508 ARVKN-AIDALR--KNRTTFIIAHRLSTVRNA 536 (585)
T ss_pred HHHHH-HHHHHh--CCCEEEEEEcChHHHHcC
Confidence 87754 444443 478999999999776543
No 348
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.47 E-value=2.5e-13 Score=166.46 Aligned_cols=143 Identities=13% Similarity=0.130 Sum_probs=100.2
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc----c--
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE----L-- 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~----~-- 832 (1083)
.++++|++|++++|++++|+||||||||||++.|++... +...-.+|+++..- +
T Consensus 355 ~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~ 434 (555)
T TIGR01194 355 GFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGP 434 (555)
T ss_pred CceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhc
Confidence 369999999999999999999999999999999975321 11112344443110 0
Q ss_pred --------chHHHHHhhCCcchhHHh---c---hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 833 --------HVLDGIYTRMGASDSIQQ---G---RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 833 --------~~~~~i~~~~~~~d~~~~---~---~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
..........+..+.+.. | ...++++.+++..+++. +.+|+++||||||+|+|+.....+...++
T Consensus 435 n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~ 514 (555)
T TIGR01194 435 DEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELL 514 (555)
T ss_pred ccccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence 011223445555444322 2 14577777777666665 68999999999999999998888866666
Q ss_pred HHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 898 DYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+.+.. .+.|+|++||+++....+|
T Consensus 515 ~~~~~-~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 515 PDLKR-QGKTIIIISHDDQYFELAD 538 (555)
T ss_pred HHHHh-CCCEEEEEeccHHHHHhCC
Confidence 55544 5899999999987765444
No 349
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.47 E-value=6.7e-13 Score=164.24 Aligned_cols=143 Identities=14% Similarity=0.075 Sum_probs=98.3
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH-------------------HHhhccccccccccc--cchH
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG-------------------IMAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~-------------------~laq~g~~vp~~~~~--~~~~ 835 (1083)
++++|++|++|++++|+.++|+||+|||||||++.|++.. -+.+.-+|||++..- -++.
T Consensus 361 ~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~ 440 (588)
T PRK11174 361 DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLR 440 (588)
T ss_pred CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHH
Confidence 3567999999999999999999999999999999998653 011122456665211 1122
Q ss_pred HHH---------------HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGI---------------YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i---------------~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++| ....++.+. +..+-..++++.+|+..++++ +.+|+++||||||+++|+..
T Consensus 441 eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~t 520 (588)
T PRK11174 441 DNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHS 520 (588)
T ss_pred HHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHH
Confidence 222 122222222 222223577777777666665 68999999999999999998
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
...+...+ ..+. .+.|+|++||.++....+|
T Consensus 521 e~~i~~~l-~~~~--~~~TvIiItHrl~~i~~aD 551 (588)
T PRK11174 521 EQLVMQAL-NAAS--RRQTTLMVTHQLEDLAQWD 551 (588)
T ss_pred HHHHHHHH-HHHh--CCCEEEEEecChHHHHhCC
Confidence 88886544 4443 4789999999997765443
No 350
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.47 E-value=1.5e-13 Score=135.51 Aligned_cols=144 Identities=16% Similarity=0.256 Sum_probs=103.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHH-----------------------------------HHHhhccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALI-----------------------------------GIMAQVGS 823 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~-----------------------------------~~laq~g~ 823 (1083)
-+|+++++|+++.|+|+++-||+|+|||||||++-.. .+.+|..-
T Consensus 24 LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 24 LPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 3677899999999999999999999999999998422 11222111
Q ss_pred ccccccc-----------cc------chHHHHHhhCCcchhHHh-chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 824 FVPASSA-----------EL------HVLDGIYTRMGASDSIQQ-GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 824 ~vp~~~~-----------~~------~~~~~i~~~~~~~d~~~~-~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
.+|.-.+ .+ .....++++++..+.+.. ..+||+++.++..+|.+. +.+.++++|||||++|
T Consensus 104 viPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasL 183 (235)
T COG4778 104 VIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASL 183 (235)
T ss_pred hccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccc
Confidence 1221100 00 012347788887776654 467999999999988886 7899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhhc
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTKF 924 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~~ 924 (1083)
|..+...+.. ++..-+. .|+.++=+-||.+..+ .+++.
T Consensus 184 Da~Nr~vVve-li~e~Ka-~GaAlvGIFHDeevre~vadR~ 222 (235)
T COG4778 184 DATNRAVVVE-LIREAKA-RGAALVGIFHDEEVREAVADRL 222 (235)
T ss_pred cccchHHHHH-HHHHHHh-cCceEEEeeccHHHHHHHhhhe
Confidence 9988777744 4444343 7999999999998865 44443
No 351
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.47 E-value=1.5e-13 Score=147.18 Aligned_cols=140 Identities=13% Similarity=0.111 Sum_probs=88.5
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH------HH-hhcc------cccccc-c-------ccc--
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG------IM-AQVG------SFVPAS-S-------AEL-- 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~------~l-aq~g------~~vp~~-~-------~~~-- 832 (1083)
|++..+++++++ ++++|+|||||||||+|++|..+. .. .++| .+.|.. . ..+
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIID 88 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCC
Confidence 345667778877 589999999999999999997331 00 1122 111110 0 000
Q ss_pred -------ch----------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHH
Q 001405 833 -------HV----------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC-----TAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 -------~~----------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~-----~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
++ ...+...++..+......+.++.++++...+.+.+ .+|+++++|||++|+|+....
T Consensus 89 ~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~ 168 (212)
T cd03274 89 KPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVS 168 (212)
T ss_pred HHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHH
Confidence 00 01111223333333444567788888877777643 357999999999999998777
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
.+ +.++..+. .+.++|++||+.++..++++
T Consensus 169 ~l-~~~l~~~~--~~~~~iivs~~~~~~~~~d~ 198 (212)
T cd03274 169 IV-ANYIKERT--KNAQFIVISLRNNMFELADR 198 (212)
T ss_pred HH-HHHHHHHc--CCCEEEEEECcHHHHHhCCE
Confidence 66 55666654 36789999999887766554
No 352
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.46 E-value=1.8e-13 Score=168.31 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=99.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--chH-
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HVL- 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~~- 835 (1083)
+++++|++|++++|++++|+||||||||||++.|++..- +.+.-++||++..-+ ++.
T Consensus 353 ~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~ 432 (574)
T PRK11160 353 QPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRD 432 (574)
T ss_pred CcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHH
Confidence 579999999999999999999999999999999985421 112234566552111 111
Q ss_pred --------------HHHHhhCCcchhHHh----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 836 --------------DGIYTRMGASDSIQQ----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 836 --------------~~i~~~~~~~d~~~~----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
...+...++.+.+.. +-..++++.++...+++. +.+|+++||||||+++|+....
T Consensus 433 Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~ 512 (574)
T PRK11160 433 NLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETER 512 (574)
T ss_pred HhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 223344555554433 334577777777666665 6899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.+...+. .+. .++|+|++||.++....+|
T Consensus 513 ~i~~~l~-~~~--~~~tviiitHr~~~~~~~d 541 (574)
T PRK11160 513 QILELLA-EHA--QNKTVLMITHRLTGLEQFD 541 (574)
T ss_pred HHHHHHH-HHc--CCCEEEEEecChhHHHhCC
Confidence 7755444 343 4789999999988765443
No 353
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.46 E-value=1.3e-13 Score=170.57 Aligned_cols=145 Identities=14% Similarity=0.185 Sum_probs=100.0
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------------------hhcccccccccc---ccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------------------AQVGSFVPASSA---ELH 833 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------------------aq~g~~vp~~~~---~~~ 833 (1083)
+++.+++|+++.+.+|++++|+|||||||||||++|++.... .+.-+|+|++.. .++
T Consensus 36 ~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lT 115 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLT 115 (617)
T ss_pred CccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCc
Confidence 467899999999999999999999999999999999864311 111245555421 112
Q ss_pred h------------------------HHHHHhhCCcchhHHhch------hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 834 V------------------------LDGIYTRMGASDSIQQGR------STFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 834 ~------------------------~~~i~~~~~~~d~~~~~~------stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
+ ++.++..+|..+...... ..++++.++...+.+. +.+|++++||||++
T Consensus 116 V~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPts 195 (617)
T TIGR00955 116 VREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTS 195 (617)
T ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCc
Confidence 2 233444555433222222 2466666665555544 79999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH--HHHHhhh
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK--IADIKTK 923 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~--l~~l~~~ 923 (1083)
|||+..+..+.. .++.+.+ .|.|+|++||.+. +.++.|+
T Consensus 196 gLD~~~~~~l~~-~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~ 236 (617)
T TIGR00955 196 GLDSFMAYSVVQ-VLKGLAQ-KGKTIICTIHQPSSELFELFDK 236 (617)
T ss_pred chhHHHHHHHHH-HHHHHHh-CCCEEEEEeCCCCHHHHHHhce
Confidence 999999888855 4555665 5899999999973 5555554
No 354
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.46 E-value=1.9e-13 Score=174.67 Aligned_cols=153 Identities=11% Similarity=0.140 Sum_probs=112.0
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhccccccccccccc------
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSAELH------ 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~~~~------ 833 (1083)
+.+++++.+++|+|++++|||||||||++|++.+... ..+.-+|.|+..+-..
T Consensus 580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rE 659 (885)
T KOG0059|consen 580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGRE 659 (885)
T ss_pred hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhccHHH
Confidence 7899999999999999999999999999999864321 1122336666532111
Q ss_pred ------------------hHHHHHhhCCcchhHHhchhhhHHHHHHHH-HHHHhCCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 834 ------------------VLDGIYTRMGASDSIQQGRSTFLEELNEAS-YILRNCTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 834 ------------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~-~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
.++.++..++..+......+++++++++.. -+++.+.+|++|+||||++|+||..+..+ |
T Consensus 660 hL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~l-W 738 (885)
T KOG0059|consen 660 HLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHL-W 738 (885)
T ss_pred HHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHH-H
Confidence 123345556666666677788888887754 44555789999999999999999766655 8
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHH-HhhhccCCcceeEEEEE
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIAD-IKTKFTGSVGTYHVSYL 936 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~-l~~~~~~~v~~~~~~~~ 936 (1083)
.++..+.+ .|..+|++||.++.++ ++++..- ..+-++.+.
T Consensus 739 ~ii~~~~k-~g~aiiLTSHsMeE~EaLCtR~aI-mv~G~l~ci 779 (885)
T KOG0059|consen 739 DIIARLRK-NGKAIILTSHSMEEAEALCTRTAI-MVIGQLRCI 779 (885)
T ss_pred HHHHHHHh-cCCEEEEEcCCHHHHHHHhhhhhe-eecCeeEEe
Confidence 89988887 4559999999999987 6666542 444455554
No 355
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.45 E-value=8.7e-13 Score=154.03 Aligned_cols=202 Identities=18% Similarity=0.154 Sum_probs=118.6
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhcC-CC-ccceeecCCCcceeeeecCccceeeecccc-cccccccccc
Q 001405 712 FLKEFGGYYAEFQAAVQALAALDCLHALATLSRNK-NF-VRPVFVDDHEPVQIHICSGRHPVLDTILLD-NFVPNDTNLH 788 (1083)
Q Consensus 712 l~~~~~~~~~~l~~~~~~i~~lD~l~s~a~~a~~~-~~-~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~-~~v~ndi~l~ 788 (1083)
+..-++..-..+.......+-.|.+.+|-.--... +. ..+.....+ .+.+. ..|--+ .+++ +++++|++|+
T Consensus 270 ff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~---~~ei~-~~~l~~--~y~~g~~~l~~l~~t 343 (559)
T COG4988 270 FFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP---PIEIS-LENLSF--RYPDGKPALSDLNLT 343 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC---Cceee-ecceEE--ecCCCCcccCCceeE
Confidence 33344444455555566677778776664322111 11 111221111 23333 122222 2332 3999999999
Q ss_pred cCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--ch------------
Q 001405 789 AEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HV------------ 834 (1083)
Q Consensus 789 ~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~------------ 834 (1083)
+++|+.++|+|+||||||||+..|++..- ..+--++||+..--+ ++
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~s 423 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDAS 423 (559)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHHhhccCCcCC
Confidence 99999999999999999999999986431 011123444431100 01
Q ss_pred ---HHHHHhhCCcch----------hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 835 ---LDGIYTRMGASD----------SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 835 ---~~~i~~~~~~~d----------~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
..+...+.|+.+ .+..+-+..+++..++..+++. ..+++++|+||||+++|.+....|. ..+..+
T Consensus 424 ~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~-~~l~~l 502 (559)
T COG4988 424 DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIIL-QALQEL 502 (559)
T ss_pred HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHH-HHHHHH
Confidence 112233333333 2333334566666665555555 6788999999999999987666664 455555
Q ss_pred HhCCCcEEEEEeCchHHHHHhh
Q 001405 901 LEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.+ +.|+|++||.+..+.-+|
T Consensus 503 ~~--~ktvl~itHrl~~~~~~D 522 (559)
T COG4988 503 AK--QKTVLVITHRLEDAADAD 522 (559)
T ss_pred Hh--CCeEEEEEcChHHHhcCC
Confidence 55 689999999988776444
No 356
>PLN03140 ABC transporter G family member; Provisional
Probab=99.45 E-value=1.6e-13 Score=181.83 Aligned_cols=143 Identities=13% Similarity=0.134 Sum_probs=99.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhccccccccc---cccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASS---AELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~---~~~~~~ 835 (1083)
...+++||++.+.+|++++|+|||||||||||++|++... ..+.-+|+++.. ..+++.
T Consensus 892 ~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~ 971 (1470)
T PLN03140 892 RLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVR 971 (1470)
T ss_pred CceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCCcHH
Confidence 3479999999999999999999999999999999986421 011123444431 111222
Q ss_pred ------------------------HHHHhhCCcchhHHhch-----hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 836 ------------------------DGIYTRMGASDSIQQGR-----STFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 836 ------------------------~~i~~~~~~~d~~~~~~-----stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
+.++..++..+...... ..+++++++...|+.. +.+|++++|||||+|||
T Consensus 972 E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD 1051 (1470)
T PLN03140 972 ESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051 (1470)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Confidence 23444445443222221 4678888777666665 79999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH--HHHhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKI--ADIKT 922 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l--~~l~~ 922 (1083)
+..+..+. .+++.+.+ .|.+||++||+++. .++.|
T Consensus 1052 ~~~a~~v~-~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D 1088 (1470)
T PLN03140 1052 ARAAAIVM-RTVRNTVD-TGRTVVCTIHQPSIDIFEAFD 1088 (1470)
T ss_pred HHHHHHHH-HHHHHHHH-CCCEEEEEeCCCCHHHHHhCC
Confidence 98888775 55666766 58999999999863 44444
No 357
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.45 E-value=1.6e-12 Score=163.70 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=97.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccccc--chH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAEL--HVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~~--~~~ 835 (1083)
+++|++|++|++++|+.++|+||||||||||+|.|+++.. +.+.-++||++..-+ ++.
T Consensus 465 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 544 (686)
T TIGR03797 465 GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIF 544 (686)
T ss_pred CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHH
Confidence 4679999999999999999999999999999999986431 222334666653211 112
Q ss_pred H--------------HHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 836 D--------------GIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 836 ~--------------~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
+ +.....++.+.+. .+-..++++.+|...++++ +.+|+++||||||+++|+...
T Consensus 545 eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te 624 (686)
T TIGR03797 545 ENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQ 624 (686)
T ss_pred HHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 2 2233334443332 2224577777777666665 689999999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+... +.+ .++|+|++||.++....+|
T Consensus 625 ~~i~~~----L~~-~~~T~IiItHr~~~i~~~D 652 (686)
T TIGR03797 625 AIVSES----LER-LKVTRIVIAHRLSTIRNAD 652 (686)
T ss_pred HHHHHH----HHH-hCCeEEEEecChHHHHcCC
Confidence 766443 333 3579999999998776544
No 358
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.44 E-value=1.6e-13 Score=145.32 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=109.2
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------Hhhccccccccccccc----------------
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------MAQVGSFVPASSAELH---------------- 833 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------laq~g~~vp~~~~~~~---------------- 833 (1083)
+++|+.+...+++|.|++|||||||+|+|+++.- -+.-|.++|.+..+++
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5777776657999999999999999999997752 1234455554433222
Q ss_pred ------------hHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 834 ------------VLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 834 ------------~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
.||.+...+|...-+....++++++.++...|-++ .+.|.|++||||.++||..-..++ .-.+|.|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~Ei-lpylERL 174 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREI-LPYLERL 174 (352)
T ss_pred chhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHH-HHHHHHH
Confidence 25677777888888888888999888887777776 699999999999999998877777 4677888
Q ss_pred HhCCCcEEEEEeCch-HHHHHhhhc
Q 001405 901 LEHKKCMVLFVTHYP-KIADIKTKF 924 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~-~l~~l~~~~ 924 (1083)
.++.+.-|+++||-+ |++.|+++.
T Consensus 175 ~~e~~IPIlYVSHS~~Ev~RLAd~v 199 (352)
T COG4148 175 RDEINIPILYVSHSLDEVLRLADRV 199 (352)
T ss_pred HHhcCCCEEEEecCHHHHHhhhheE
Confidence 887899999999987 556677653
No 359
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.44 E-value=7.9e-13 Score=145.21 Aligned_cols=80 Identities=19% Similarity=0.238 Sum_probs=61.4
Q ss_pred hhCCcch-hHHhchhhhHHHHHHHHHHHHhC-C---CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 840 TRMGASD-SIQQGRSTFLEELNEASYILRNC-T---AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 840 ~~~~~~d-~~~~~~stf~~e~~~~~~il~~~-~---~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
..+|... .+....+++++++++...+++.+ . +|+++|||||++|+|+.+...+. .++..+.+ .|.++|++||+
T Consensus 154 ~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~-~~L~~l~~-~g~tvIiitH~ 231 (261)
T cd03271 154 CDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLL-EVLQRLVD-KGNTVVVIEHN 231 (261)
T ss_pred HHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCC
Confidence 3455554 45666778888888877777664 3 36999999999999999888885 45666665 68999999999
Q ss_pred hHHHHHh
Q 001405 915 PKIADIK 921 (1083)
Q Consensus 915 ~~l~~l~ 921 (1083)
+++...+
T Consensus 232 ~~~i~~a 238 (261)
T cd03271 232 LDVIKCA 238 (261)
T ss_pred HHHHHhC
Confidence 9887644
No 360
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.44 E-value=2.4e-13 Score=155.17 Aligned_cols=126 Identities=16% Similarity=0.125 Sum_probs=86.4
Q ss_pred EEcCCCCCchhHHHHHHHHHHH------------------hhcccccccccc---ccchH--------------------
Q 001405 797 ITGPNMGGKSCYIRQVALIGIM------------------AQVGSFVPASSA---ELHVL-------------------- 835 (1083)
Q Consensus 797 ItGpNgsGKSTlLr~i~~~~~l------------------aq~g~~vp~~~~---~~~~~-------------------- 835 (1083)
|+||||||||||||+|+++... .+...|+++... .+++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 6899999999999999865311 011124443321 11222
Q ss_pred -HHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeC
Q 001405 836 -DGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913 (1083)
Q Consensus 836 -~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH 913 (1083)
..++..++..+........+++++++...+++. +.+|+++|||||++|+|+.....+. .++..+.++.|.++|++||
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~-~~l~~l~~~~g~tiiivTH 159 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQ-LELKTIQEQLGITFVFVTH 159 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHH-HHHHHHHHhcCCEEEEEeC
Confidence 223445555555556667888888887777776 6899999999999999998877774 4555555435899999999
Q ss_pred chHHH-HHhhh
Q 001405 914 YPKIA-DIKTK 923 (1083)
Q Consensus 914 ~~~l~-~l~~~ 923 (1083)
+.+.+ .++++
T Consensus 160 d~~e~~~~~d~ 170 (325)
T TIGR01187 160 DQEEAMTMSDR 170 (325)
T ss_pred CHHHHHHhCCE
Confidence 98765 35543
No 361
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.44 E-value=2.6e-13 Score=171.50 Aligned_cols=141 Identities=18% Similarity=0.151 Sum_probs=97.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++.+++|++|++++|+.++|+||||||||||+|.|+++.. +.+.-+|||++..- -++.
T Consensus 491 ~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~ 570 (710)
T TIGR03796 491 EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVR 570 (710)
T ss_pred CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHH
Confidence 3579999999999999999999999999999999986421 12233466665211 1222
Q ss_pred HHH---------------HhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGI---------------YTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i---------------~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++| ....++.+.+. .+-..++++.+|...+++. +.+|+++||||||+++|+..
T Consensus 571 eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~t 650 (710)
T TIGR03796 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPET 650 (710)
T ss_pred HHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHH
Confidence 222 22223322222 2224577777776666665 68999999999999999987
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
...+... +.+ .++|+|++||.++....+|+
T Consensus 651 e~~i~~~----l~~-~~~T~IiitHrl~~i~~~D~ 680 (710)
T TIGR03796 651 EKIIDDN----LRR-RGCTCIIVAHRLSTIRDCDE 680 (710)
T ss_pred HHHHHHH----HHh-cCCEEEEEecCHHHHHhCCE
Confidence 7766443 333 58999999999988765543
No 362
>PF05188 MutS_II: MutS domain II; InterPro: IPR007860 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the connector domain (domain 2) found in proteins of the MutS family. The structure of the MutS connector domain consists of a parallel beta-sheet surrounded by four alpha helices, which is similar to the structure of the Holliday junction resolvase ruvC.; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2O8F_A 3THW_A 3THX_A 2O8C_A 3THY_A 2O8E_A 2O8B_A 3THZ_A 2O8D_A 2WTU_A ....
Probab=99.43 E-value=1.9e-12 Score=128.72 Aligned_cols=130 Identities=24% Similarity=0.319 Sum_probs=91.5
Q ss_pred ceEEEEEeecCCCcccccCccCCCccceEEEEEEEcccCcEEEEEecCchhHHHHHHHHhccCccEEEeCCCCChHHHHH
Q 001405 217 NYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKM 296 (1083)
Q Consensus 217 ~yLlaI~e~~~~~~~~~~~~~~~~~~~~iGIa~vDvsTGe~~~~~f~D~~~~~~L~t~L~~~~P~EILl~~~ls~~~~k~ 296 (1083)
|||+||+++ .+ ...+|+||+|+|||+|++++|.| +++|.+.|.+++|+|||++..........
T Consensus 1 Nyl~aI~~~-~~-------------~~~~gla~~D~sTGe~~~~~~~d---~~~L~~~L~~~~P~EIi~~~~~~~~~~~~ 63 (137)
T PF05188_consen 1 NYLAAIYEK-ND-------------EDSYGLAYIDLSTGEFYVTEFED---YSELKSELARLSPREIIIPEGFSSSDISA 63 (137)
T ss_dssp -EEEEEEEE-TC-------------SSEEEEEEEETTTTEEEEEEEEC---HHHHHHHHHHH-ESEEEEETTCSHHHHHH
T ss_pred CEEEEEEEe-cC-------------CCEEEEEEEECCCCEEEEEEeCC---HHHHHHHHHhcCCeEEEEcCCCcccccch
Confidence 799999985 11 12699999999999999999998 89999999999999999998765432211
Q ss_pred HHHhcCCCCcceeeecCccccccchhHHHHHHHhhcccCCccCcCcccCCCccccCCCcchhhhccCCcHHHHHHHHHHH
Q 001405 297 LLAYAGPASNVRVECASRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTI 376 (1083)
Q Consensus 297 l~~~~~~~~~~~v~~~~~~~F~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~a~~Al~all 376 (1083)
...... .....+...+.+.|+...+...+.++|.....+. . ++....+.+++|+|+++
T Consensus 64 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~------------------~---~~~~~~~~~~~Al~all 121 (137)
T PF05188_consen 64 LLSSLK-NSFFKVTETPSWYFDSEFASEDIEEQFGVADLDG------------------F---GLEEDKELALSALGALL 121 (137)
T ss_dssp HHHCCT-TTCCEEEEETCGGGSHHHHHHHHHHHCTSSSTCC------------------C---TTGGGGHHHHHHHHHHH
T ss_pred hhhhhc-cccceeeecchhhhhhHHHHHHHHHhhccccccc------------------c---CccCCCHHHHHHHHHHH
Confidence 111111 1233455566777888888888887775422111 0 01123478999999999
Q ss_pred HHHHHhccc
Q 001405 377 RHLKQFGLE 385 (1083)
Q Consensus 377 ~YL~~~~~~ 385 (1083)
+||+.++..
T Consensus 122 ~Yl~~t~~~ 130 (137)
T PF05188_consen 122 KYLEETQKS 130 (137)
T ss_dssp HHHHHTTTC
T ss_pred HHHHHHCcc
Confidence 999998876
No 363
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.43 E-value=2.3e-13 Score=131.42 Aligned_cols=141 Identities=15% Similarity=0.111 Sum_probs=105.0
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------------Hhhccccc------cc-
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------------MAQVGSFV------PA- 827 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------------laq~g~~v------p~- 827 (1083)
++...+-+++|++.+|+|+-|.||+||||||||.-+++..- -.|+|+.+ |.
T Consensus 13 ~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl 92 (213)
T COG4136 13 PGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL 92 (213)
T ss_pred CCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc
Confidence 34555567999999999999999999999999998865320 12333221 11
Q ss_pred ------------c---ccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHH
Q 001405 828 ------------S---SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 828 ------------~---~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
. +++-...+..+++.|..........+.+++.+....+++. ...|.+++||||++.+|..-+..
T Consensus 93 sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~q 172 (213)
T COG4136 93 SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQ 172 (213)
T ss_pred ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHH
Confidence 1 1111223456777777777777788888887776666665 58899999999999999998888
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
....+...+.. .|.-++.+|||++-+
T Consensus 173 fR~wVFs~~r~-agiPtv~VTHD~~Dv 198 (213)
T COG4136 173 FRQWVFSEVRA-AGIPTVQVTHDLQDV 198 (213)
T ss_pred HHHHHHHHHHh-cCCCeEEEecccccC
Confidence 88888888776 799999999998754
No 364
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.43 E-value=1.5e-12 Score=163.98 Aligned_cols=142 Identities=16% Similarity=0.126 Sum_probs=98.2
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++.+++|++|++++|+.++|+|+||||||||+|+|+++.. +.+..++||++..- -++.
T Consensus 469 ~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~ 548 (694)
T TIGR01846 469 SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIR 548 (694)
T ss_pred CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHH
Confidence 3569999999999999999999999999999999986521 12223466655211 1112
Q ss_pred HH---------------HHhhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DG---------------IYTRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~---------------i~~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++ .....++.+.+ ..+-..++++.++...+++. +.+|+++||||||+|+|+..
T Consensus 549 eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~ 628 (694)
T TIGR01846 549 DNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYES 628 (694)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHH
Confidence 22 22222332222 22234577777776666665 68999999999999999988
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
...+...+.+ +. .++|+|++||.++....+|
T Consensus 629 ~~~i~~~l~~-~~--~~~t~i~itH~~~~~~~~d 659 (694)
T TIGR01846 629 EALIMRNMRE-IC--RGRTVIIIAHRLSTVRACD 659 (694)
T ss_pred HHHHHHHHHH-Hh--CCCEEEEEeCChHHHHhCC
Confidence 8777555443 43 4789999999998766443
No 365
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.42 E-value=7.5e-13 Score=155.22 Aligned_cols=140 Identities=16% Similarity=0.098 Sum_probs=103.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-------------------------hcccccccc--ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA-------------------------QVGSFVPAS--SAE 831 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-------------------------q~g~~vp~~--~~~ 831 (1083)
..+.+||||++.+|++++|+|++||||||+.|+|+++.... |++.--|.. +.+
T Consensus 304 ~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr 383 (539)
T COG1123 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPR 383 (539)
T ss_pred eeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCcc
Confidence 46789999999999999999999999999999998664210 111100100 001
Q ss_pred cc----------------------hHHHHHhhCCcchh-HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 832 LH----------------------VLDGIYTRMGASDS-IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 832 ~~----------------------~~~~i~~~~~~~d~-~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.+ .++.++..+|...+ +.+....|+++.++...|+++ +.+|.+||+|||++.||+.
T Consensus 384 ~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvs 463 (539)
T COG1123 384 MTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVS 463 (539)
T ss_pred ccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHH
Confidence 11 13445777777653 556677888888777777665 7999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
....+...+. .|.++.|.+.||+|||+.+.+
T Consensus 464 vqa~VlnLl~-~lq~e~g~t~lfISHDl~vV~ 494 (539)
T COG1123 464 VQAQVLNLLK-DLQEELGLTYLFISHDLAVVR 494 (539)
T ss_pred HHHHHHHHHH-HHHHHhCCEEEEEeCCHHHHH
Confidence 8888865544 455658999999999999886
No 366
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.42 E-value=3.2e-13 Score=179.75 Aligned_cols=138 Identities=13% Similarity=0.132 Sum_probs=97.2
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---H----------------hhccccccccc---cccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---M----------------AQVGSFVPASS---AELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---l----------------aq~g~~vp~~~---~~~~~~ 835 (1083)
++.+++||++.+.+|++++|+|||||||||||++|++... . .+.-+|||++. ..+++.
T Consensus 775 ~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~Tv~ 854 (1394)
T TIGR00956 775 KRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVR 854 (1394)
T ss_pred CcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcceeeecccccCCCCCCHH
Confidence 4579999999999999999999999999999999987542 0 11123555431 112222
Q ss_pred ------------------------HHHHhhCCcchhHHhchh----hhHHHHHHHHHHHHh-CCCCc-EEEEeCCCCCCC
Q 001405 836 ------------------------DGIYTRMGASDSIQQGRS----TFLEELNEASYILRN-CTAQS-LVIVDELGRGTS 885 (1083)
Q Consensus 836 ------------------------~~i~~~~~~~d~~~~~~s----tf~~e~~~~~~il~~-~~~~s-LvllDEp~~Gtd 885 (1083)
++++..++..+....... .++++++++..|... +.+|+ +++|||||+|||
T Consensus 855 E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD 934 (1394)
T TIGR00956 855 ESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934 (1394)
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCC
Confidence 233344444332222222 577777777666655 68885 999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
+..+..+ ..+++.+.+ .|++||++||+++.
T Consensus 935 ~~~~~~i-~~~L~~la~-~g~tvI~t~H~~~~ 964 (1394)
T TIGR00956 935 SQTAWSI-CKLMRKLAD-HGQAILCTIHQPSA 964 (1394)
T ss_pred HHHHHHH-HHHHHHHHH-cCCEEEEEecCCCH
Confidence 9888777 456666665 68999999999874
No 367
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.41 E-value=1.4e-12 Score=164.37 Aligned_cols=140 Identities=15% Similarity=0.095 Sum_probs=95.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc--ccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA--ELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~--~~~~~ 835 (1083)
+++|++|++|++++|+.++|+||||||||||++.|+++.- +.+.-++||++.. .-++.
T Consensus 493 ~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIr 572 (711)
T TIGR00958 493 DVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVR 572 (711)
T ss_pred CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHH
Confidence 3579999999999999999999999999999999986531 2222346666521 11122
Q ss_pred HH---------------HHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DG---------------IYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~---------------i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++ .....++.+.+. .+-..++++.+|...+++. +.+|+++||||||+++|+..
T Consensus 573 eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 573 ENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 22 222233332222 2223577777777667766 68999999999999999976
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
...+.. .. ...++|+|++||.++....+|
T Consensus 653 e~~i~~----~~-~~~~~TvIiItHrl~~i~~aD 681 (711)
T TIGR00958 653 EQLLQE----SR-SRASRTVLLIAHRLSTVERAD 681 (711)
T ss_pred HHHHHH----hh-ccCCCeEEEEeccHHHHHhCC
Confidence 655533 11 225789999999998776544
No 368
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.41 E-value=2.8e-12 Score=161.96 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=97.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~~ 835 (1083)
++.|++|++|++++|+.++|+||||||||||+|.|+++.- +.+.-+|||++..- -++.
T Consensus 486 ~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~ 565 (708)
T TIGR01193 486 GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSIL 565 (708)
T ss_pred CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHH
Confidence 4579999999999999999999999999999999986531 12223466665211 1112
Q ss_pred HHH----------------HhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 836 DGI----------------YTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 836 ~~i----------------~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
++| ....++.+.+. .+-..++++.++...++++ +.+|+++||||||+++|+.
T Consensus 566 eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~ 645 (708)
T TIGR01193 566 ENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTI 645 (708)
T ss_pred HHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHH
Confidence 222 22223332222 2224567777777777766 6899999999999999998
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
....+...+.+ + .++|+|++||.++....+|
T Consensus 646 te~~i~~~L~~-~---~~~T~IiitHr~~~~~~~D 676 (708)
T TIGR01193 646 TEKKIVNNLLN-L---QDKTIIFVAHRLSVAKQSD 676 (708)
T ss_pred HHHHHHHHHHH-h---cCCEEEEEecchHHHHcCC
Confidence 87777554443 3 3789999999998776544
No 369
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.40 E-value=9.1e-13 Score=160.97 Aligned_cols=134 Identities=17% Similarity=0.153 Sum_probs=93.3
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccccc--chHHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSAEL--HVLDG 837 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~~~--~~~~~ 837 (1083)
+.|++|++|++++|+.++|+||+|||||||++.|+++.- +.+.-+|||++..-+ ++.++
T Consensus 348 ~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~TI~eN 427 (529)
T TIGR02868 348 PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHLFDTTVRDN 427 (529)
T ss_pred CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCcccccccHHHH
Confidence 469999999999999999999999999999999975421 112234677663211 12222
Q ss_pred ---------------HHhhCCcchhHHh-----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 838 ---------------IYTRMGASDSIQQ-----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 838 ---------------i~~~~~~~d~~~~-----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
.....++.+.+.. +-..++++.+|+..+++. +.+|+++||||||+++|+....
T Consensus 428 I~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~ 507 (529)
T TIGR02868 428 LRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTES 507 (529)
T ss_pred HhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 2333344433322 123467777776666665 6899999999999999998888
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
.+...+.+ +. .++|+|++||.+
T Consensus 508 ~I~~~l~~-~~--~~~TvIiItHrl 529 (529)
T TIGR02868 508 ELLEDLLA-AL--SGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHH-hc--CCCEEEEEecCC
Confidence 77655543 32 479999999973
No 370
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.40 E-value=1.2e-12 Score=174.55 Aligned_cols=143 Identities=13% Similarity=0.112 Sum_probs=98.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH---------------------Hhhcccccccccc--ccchH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI---------------------MAQVGSFVPASSA--ELHVL 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~---------------------laq~g~~vp~~~~--~~~~~ 835 (1083)
..|++|++|++++|++++|+||||||||||+++|+++.- +.+.-.+||++.. ..++.
T Consensus 398 ~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~ 477 (1466)
T PTZ00265 398 VEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIK 477 (1466)
T ss_pred CceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHH
Confidence 469999999999999999999999999999999986531 1111235555421 11223
Q ss_pred HHHHh------------------------------------------------------------------------hCC
Q 001405 836 DGIYT------------------------------------------------------------------------RMG 843 (1083)
Q Consensus 836 ~~i~~------------------------------------------------------------------------~~~ 843 (1083)
++|.- ..+
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 33211 122
Q ss_pred cchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 001405 844 ASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFV 911 (1083)
Q Consensus 844 ~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~ 911 (1083)
+.+.+ ......++++++++..|+++ +.+|+++||||||+++|+.....+. ..++.+.+..|.|+|++
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~-~~L~~~~~~~g~TvIiI 636 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQ-KTINNLKGNENRITIII 636 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH-HHHHHHhhcCCCEEEEE
Confidence 22221 12234678888887777776 6899999999999999998777774 45555543258999999
Q ss_pred eCchHHHHHhh
Q 001405 912 THYPKIADIKT 922 (1083)
Q Consensus 912 TH~~~l~~l~~ 922 (1083)
||+++....+|
T Consensus 637 sHrls~i~~aD 647 (1466)
T PTZ00265 637 AHRLSTIRYAN 647 (1466)
T ss_pred eCCHHHHHhCC
Confidence 99998776554
No 371
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.39 E-value=9.3e-13 Score=141.51 Aligned_cols=135 Identities=13% Similarity=0.104 Sum_probs=85.0
Q ss_pred cccccccC-CceEEEEEcCCCCCchhHHHHHHHHHH-----------Hhh----------cccccccccc--------cc
Q 001405 783 NDTNLHAE-REYCQIITGPNMGGKSCYIRQVALIGI-----------MAQ----------VGSFVPASSA--------EL 832 (1083)
Q Consensus 783 ndi~l~~~-~g~i~~ItGpNgsGKSTlLr~i~~~~~-----------laq----------~g~~vp~~~~--------~~ 832 (1083)
++++|... +|++++|+|||||||||+|+.|....+ ... ++..+..... .+
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~~gl 97 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERSRGL 97 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEecCC
Confidence 55667543 488999999999999999999973210 000 0000000000 00
Q ss_pred ch--HHH-HHhhCC-cchhHHhchhhhHHHHHHHHHHHHhC-----------CCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 833 HV--LDG-IYTRMG-ASDSIQQGRSTFLEELNEASYILRNC-----------TAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 833 ~~--~~~-i~~~~~-~~d~~~~~~stf~~e~~~~~~il~~~-----------~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
.. +.+ +....+ ..+.+.....++++++++...+++.. .+|+++|+|||++|+|+.....+ ..++
T Consensus 98 ~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~-~~~l 176 (213)
T cd03279 98 DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAV-ATAL 176 (213)
T ss_pred CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHH-HHHH
Confidence 00 111 111112 33444555667888888776666553 25789999999999999887777 4555
Q ss_pred HHHHhCCCcEEEEEeCchHHHH
Q 001405 898 DYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+.+.+ .+.++|++||++++..
T Consensus 177 ~~~~~-~~~tii~itH~~~~~~ 197 (213)
T cd03279 177 ELIRT-ENRMVGVISHVEELKE 197 (213)
T ss_pred HHHHh-CCCEEEEEECchHHHH
Confidence 66655 5889999999998765
No 372
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.39 E-value=2.6e-12 Score=147.11 Aligned_cols=145 Identities=19% Similarity=0.184 Sum_probs=102.3
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccc-----------------------------ccc--
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFV-----------------------------PAS-- 828 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~v-----------------------------p~~-- 828 (1083)
.+.++++|.++.++-+.++||||+|||||||++.+... ..+|... |+.
T Consensus 404 ~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~-p~~G~vs~~~H~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~ 482 (614)
T KOG0927|consen 404 MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ-PTIGMVSRHSHNKLPRYNQHLAEQLDLDKSSLEFMMPKFPD 482 (614)
T ss_pred hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc-cccccccccccccchhhhhhhHhhcCcchhHHHHHHHhccc
Confidence 68899999999999999999999999999999974321 1111111 111
Q ss_pred ccccchHHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCc
Q 001405 829 SAELHVLDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKC 906 (1083)
Q Consensus 829 ~~~~~~~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~ 906 (1083)
.-....+..++.++|.. +.....+++++.+++.+...+.. ...|.||+|||||+|+|...-.+++.+ |.+ ...
T Consensus 483 ~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laea----iNe-~~G 557 (614)
T KOG0927|consen 483 EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEA----INE-FPG 557 (614)
T ss_pred cchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHH----Hhc-cCC
Confidence 11223345677888876 55566778888888776655554 689999999999999999876665543 433 455
Q ss_pred EEEEEeCchHHH-HHhhhccCCccee
Q 001405 907 MVLFVTHYPKIA-DIKTKFTGSVGTY 931 (1083)
Q Consensus 907 ~vl~~TH~~~l~-~l~~~~~~~v~~~ 931 (1083)
++|++|||..+. ..+++.+. |.++
T Consensus 558 gvv~vSHDfrlI~qVaeEi~~-c~~~ 582 (614)
T KOG0927|consen 558 GVVLVSHDFRLISQVAEEIWV-CENG 582 (614)
T ss_pred ceeeeechhhHHHHHHHHhHh-hccC
Confidence 789999998776 46666653 4433
No 373
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=1.3e-12 Score=148.81 Aligned_cols=143 Identities=21% Similarity=0.209 Sum_probs=100.1
Q ss_pred eeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--H-h---hccccccccc----cccc-------
Q 001405 771 VLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--M-A---QVGSFVPASS----AELH------- 833 (1083)
Q Consensus 771 ~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--l-a---q~g~~vp~~~----~~~~------- 833 (1083)
-+...+|.+.++++.++++..|+-++|+|+||+|||||||+|+.-.+ + . -.|+++++.. +...
T Consensus 85 ~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~ 164 (582)
T KOG0062|consen 85 NFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAE 164 (582)
T ss_pred eeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHh
Confidence 34556789999999999999999999999999999999999986110 0 0 0244444321 1111
Q ss_pred ------------hHHHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 001405 834 ------------VLDGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDY 899 (1083)
Q Consensus 834 ------------~~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~ 899 (1083)
+.++++..+|.. +-..+...+|+++.+-...++++ ..+|+|+||||||+-||.. +++| +-+|
T Consensus 165 e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~---av~W-Le~y 240 (582)
T KOG0062|consen 165 EKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVV---AVAW-LENY 240 (582)
T ss_pred hhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhH---HHHH-HHHH
Confidence 122244455543 33445567888887766666665 4889999999999999975 4544 5567
Q ss_pred HHhCCCcEEEEEeCchHHH
Q 001405 900 LLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 900 l~~~~~~~vl~~TH~~~l~ 918 (1083)
|.. .+.|+|+|+||-.+.
T Consensus 241 L~t-~~~T~liVSHDr~FL 258 (582)
T KOG0062|consen 241 LQT-WKITSLIVSHDRNFL 258 (582)
T ss_pred Hhh-CCceEEEEeccHHHH
Confidence 766 678999999997654
No 374
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=1.4e-12 Score=150.03 Aligned_cols=143 Identities=15% Similarity=0.084 Sum_probs=98.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc--cch-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE--LHV- 834 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~--~~~- 834 (1083)
..++++|++|++.+|+-++|+|++||||||++..|++.-. +.+..++++++..- -++
T Consensus 350 ~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr 429 (573)
T COG4987 350 QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR 429 (573)
T ss_pred ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHH
Confidence 4579999999999999999999999999999999975211 11122223322100 001
Q ss_pred --------------HHHHHhhCCcchhHHh-----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 835 --------------LDGIYTRMGASDSIQQ-----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 835 --------------~~~i~~~~~~~d~~~~-----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
+-.++...|..+-+.. +-..|+++.++...+.+. .++.+++||||||-|||+..
T Consensus 430 ~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~T 509 (573)
T COG4987 430 DNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPIT 509 (573)
T ss_pred HHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhh
Confidence 1123444554443332 223566666666555554 57889999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
...+...+.+++ .|.|+||+||+..-.+.+|+
T Consensus 510 E~~vL~ll~~~~---~~kTll~vTHrL~~le~~dr 541 (573)
T COG4987 510 ERQVLALLFEHA---EGKTLLMVTHRLRGLERMDR 541 (573)
T ss_pred HHHHHHHHHHHh---cCCeEEEEecccccHhhcCE
Confidence 999977777764 37899999999876665554
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.38 E-value=1.4e-12 Score=143.13 Aligned_cols=70 Identities=11% Similarity=0.139 Sum_probs=53.0
Q ss_pred hchhhhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 850 QGRSTFLEELNEASYILRNC-----TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 850 ~~~stf~~e~~~~~~il~~~-----~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.....+++++++...+++.+ .+|+++|+|||++|+|+.....+.. .+..+.+ +.++|++||..++..+++
T Consensus 154 ~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~-~l~~~~~--~~~ii~~~h~~~~~~~~d 228 (243)
T cd03272 154 QEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVAN-MIKELSD--GAQFITTTFRPELLEVAD 228 (243)
T ss_pred ccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHH-HHHHHhC--CCEEEEEecCHHHHhhCC
Confidence 34567888888877777664 3579999999999999988777744 5555543 788999999987766554
No 376
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.38 E-value=9.7e-12 Score=141.78 Aligned_cols=143 Identities=20% Similarity=0.237 Sum_probs=101.2
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccc--ccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSA--ELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~--~~~~~ 835 (1083)
+++++++++|.+.+|+.++|+||+|||||||.|.|.++- .+.+.-.|+|++-. .=++.
T Consensus 348 ~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIa 427 (580)
T COG4618 348 KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIA 427 (580)
T ss_pred CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHH
Confidence 578999999999999999999999999999999997653 12333357776521 11111
Q ss_pred HHHHhhCC---------------------------cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 836 DGIYTRMG---------------------------ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 836 ~~i~~~~~---------------------------~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
++| .||+ -...+-.+-++++++.+|...+.+. ..+|.||+||||-++||..
T Consensus 428 eNI-aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~ 506 (580)
T COG4618 428 ENI-ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSE 506 (580)
T ss_pred HHH-HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchh
Confidence 111 1221 1222333345677777666655555 6899999999999999987
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
--.+++.+++. ++. +|+++|++||-+.+....|.
T Consensus 507 GE~AL~~Ai~~-~k~-rG~~vvviaHRPs~L~~~Dk 540 (580)
T COG4618 507 GEAALAAAILA-AKA-RGGTVVVIAHRPSALASVDK 540 (580)
T ss_pred HHHHHHHHHHH-HHH-cCCEEEEEecCHHHHhhcce
Confidence 66777666655 555 79999999999998876553
No 377
>PTZ00243 ABC transporter; Provisional
Probab=99.38 E-value=6.8e-13 Score=178.18 Aligned_cols=143 Identities=13% Similarity=0.150 Sum_probs=100.7
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hhcccccccccc--ccchHHHHH--------
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQVGSFVPASSA--ELHVLDGIY-------- 839 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq~g~~vp~~~~--~~~~~~~i~-------- 839 (1083)
+++.+++|++|++++|++++|+|||||||||||++|++..-. .+...|+|+... ..++.++|.
T Consensus 671 ~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~~~i~yv~Q~~~l~~~Tv~enI~~~~~~~~~ 750 (1560)
T PTZ00243 671 EPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERSIAYVPQQAWIMNATVRGNILFFDEEDAA 750 (1560)
T ss_pred CCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCeEEEEeCCCccCCCcHHHHHHcCChhhHH
Confidence 356799999999999999999999999999999999865321 111235555421 112222221
Q ss_pred ---------------hhC--CcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001405 840 ---------------TRM--GASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901 (1083)
Q Consensus 840 ---------------~~~--~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~ 901 (1083)
..+ |....+......+++++++...+++. +.+|+++|||||++|+|+..+..+...++....
T Consensus 751 ~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~ 830 (1560)
T PTZ00243 751 RLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGAL 830 (1560)
T ss_pred HHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhh
Confidence 111 22223334455678888887777776 688999999999999999888888766554333
Q ss_pred hCCCcEEEEEeCchHHHHHh
Q 001405 902 EHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 902 ~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.|.|+|++||++++...+
T Consensus 831 --~~~TvIlvTH~~~~~~~a 848 (1560)
T PTZ00243 831 --AGKTRVLATHQVHVVPRA 848 (1560)
T ss_pred --CCCEEEEEeCCHHHHHhC
Confidence 478999999999887654
No 378
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.35 E-value=7.9e-13 Score=130.93 Aligned_cols=134 Identities=14% Similarity=0.148 Sum_probs=94.8
Q ss_pred ccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------------HHhhcc-------------
Q 001405 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------------IMAQVG------------- 822 (1083)
Q Consensus 782 ~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------------~laq~g------------- 822 (1083)
+-.++..+..|+++-++|||||||||||-.++++. +++|--
T Consensus 15 L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~ 94 (248)
T COG4138 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLT 94 (248)
T ss_pred ccccccccccceEEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhh
Confidence 34567778889999999999999999999997542 233321
Q ss_pred ccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC--------CCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 823 SFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC--------TAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 823 ~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~--------~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
.+.|+ ...-+..+.|-..++..|.+....+.++++.-+..++...+ ....|+|+|||.+++|.....++ .
T Consensus 95 L~qP~-~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aL-d 172 (248)
T COG4138 95 LHQPD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSAL-D 172 (248)
T ss_pred hcCch-HHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHH-H
Confidence 11222 11222345566667777888777777777655544443321 23479999999999999777666 7
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHH
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.+++++.. .|.+||++.||++-.
T Consensus 173 rll~~~c~-~G~~vims~HDLNhT 195 (248)
T COG4138 173 RLLSALCQ-QGLAIVMSSHDLNHT 195 (248)
T ss_pred HHHHHHHh-CCcEEEEeccchhhH
Confidence 88888987 799999999997643
No 379
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.34 E-value=1.6e-12 Score=174.43 Aligned_cols=142 Identities=16% Similarity=0.083 Sum_probs=100.8
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-------cccccccccc--ccchHHHHH----------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-------VGSFVPASSA--ELHVLDGIY---------- 839 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-------~g~~vp~~~~--~~~~~~~i~---------- 839 (1083)
+++++|++|++++|++++|+|||||||||||++|++...... .-.|+|+... ..++.++|.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g~iayv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 518 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWIMPGTIKDNIIFGLSYDEYRY 518 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEEEEeCCCccCCccHHHHHHhccccchHHH
Confidence 578999999999999999999999999999999986542211 1135554421 112333332
Q ss_pred ----hhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC
Q 001405 840 ----TRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH 903 (1083)
Q Consensus 840 ----~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~ 903 (1083)
...++.+.+ .....+++++++++..++++ +.+|+++|||||++|+|+..+..+...++..+.
T Consensus 519 ~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~-- 596 (1490)
T TIGR01271 519 TSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLM-- 596 (1490)
T ss_pred HHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--
Confidence 111111111 12235688888888777776 688999999999999999999999766665554
Q ss_pred CCcEEEEEeCchHHHHHhh
Q 001405 904 KKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 904 ~~~~vl~~TH~~~l~~l~~ 922 (1083)
+++|+|++||+++....+|
T Consensus 597 ~~~tvilvtH~~~~~~~ad 615 (1490)
T TIGR01271 597 SNKTRILVTSKLEHLKKAD 615 (1490)
T ss_pred cCCeEEEEeCChHHHHhCC
Confidence 3789999999998776543
No 380
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.34 E-value=2.1e-12 Score=171.91 Aligned_cols=143 Identities=10% Similarity=-0.024 Sum_probs=96.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH----------------H---h----hccccccccc---ccc
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----------------M---A----QVGSFVPASS---AEL 832 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----------------l---a----q~g~~vp~~~---~~~ 832 (1083)
+.|++|+++.+++|++++|+||||||||||||+|++... + . +...|+++.. ..+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 457889999999999999999999999999999987520 0 0 0013444331 112
Q ss_pred chHH-----------------------------HHHhhCCcchhHHh-----chhhhHHHHHHHHHHHHh-CCCCcEEEE
Q 001405 833 HVLD-----------------------------GIYTRMGASDSIQQ-----GRSTFLEELNEASYILRN-CTAQSLVIV 877 (1083)
Q Consensus 833 ~~~~-----------------------------~i~~~~~~~d~~~~-----~~stf~~e~~~~~~il~~-~~~~sLvll 877 (1083)
++.+ .++..+|..+.... ....++++++++..|+.. +.+|+++++
T Consensus 154 TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlll 233 (1394)
T TIGR00956 154 TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCW 233 (1394)
T ss_pred CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEE
Confidence 2222 23333444322211 123467777666666654 689999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch--HHHHHhh
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP--KIADIKT 922 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~--~l~~l~~ 922 (1083)
||||+|||+..+..+. .+++.+.+..|.++|++||++ ++.++.|
T Consensus 234 DEPTsgLD~~~~~~i~-~~L~~la~~~g~tvii~~Hq~~~~i~~l~D 279 (1394)
T TIGR00956 234 DNATRGLDSATALEFI-RALKTSANILDTTPLVAIYQCSQDAYELFD 279 (1394)
T ss_pred eCCCCCcCHHHHHHHH-HHHHHHHHhcCCEEEEEecCCCHHHHHhhc
Confidence 9999999999888885 455666653589999999995 3445544
No 381
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.33 E-value=2.4e-12 Score=137.28 Aligned_cols=133 Identities=11% Similarity=0.111 Sum_probs=78.8
Q ss_pred cccccCCceEEEEEcCCCCCchhHHHHHHHHHH----Hhhc---------cc--------cccccc--------cccchH
Q 001405 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGI----MAQV---------GS--------FVPASS--------AELHVL 835 (1083)
Q Consensus 785 i~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~----laq~---------g~--------~vp~~~--------~~~~~~ 835 (1083)
++|+ +| +++|+||||+||||||++|....+ .... .. ++.... ..+.++
T Consensus 18 l~~~--~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 18 IEFF--SP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred EecC--CC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 4444 45 999999999999999999863321 0000 00 000000 001222
Q ss_pred HHHHhhC--CcchhHHhchhhhHHHHHHHH------HHH-HhCCCCcEEEEeCCCCCCCHHHHH-HHHHHHHHHHHhCCC
Q 001405 836 DGIYTRM--GASDSIQQGRSTFLEELNEAS------YIL-RNCTAQSLVIVDELGRGTSTHDGV-AIAYATLDYLLEHKK 905 (1083)
Q Consensus 836 ~~i~~~~--~~~d~~~~~~stf~~e~~~~~------~il-~~~~~~sLvllDEp~~Gtd~~~~~-~i~~~il~~l~~~~~ 905 (1083)
+++.... .....+......++.++++.. .++ ..+.+|+++|+|||++|+|+.... .+ ..++..+.+..+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l-~~~l~~~~~~~~ 173 (204)
T cd03240 95 ENVIFCHQGESNWPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESL-AEIIEERKSQKN 173 (204)
T ss_pred hceeeechHHHHHHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHH-HHHHHHHHhccC
Confidence 2221000 011122344556777766642 222 235899999999999999998777 66 455555655237
Q ss_pred cEEEEEeCchHHHHHh
Q 001405 906 CMVLFVTHYPKIADIK 921 (1083)
Q Consensus 906 ~~vl~~TH~~~l~~l~ 921 (1083)
.++|++||++++...+
T Consensus 174 ~~iiiitH~~~~~~~~ 189 (204)
T cd03240 174 FQLIVITHDEELVDAA 189 (204)
T ss_pred CEEEEEEecHHHHhhC
Confidence 8999999998876543
No 382
>PLN03140 ABC transporter G family member; Provisional
Probab=99.33 E-value=1e-12 Score=174.34 Aligned_cols=144 Identities=12% Similarity=0.110 Sum_probs=94.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hccccccccc---cccchH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------------------QVGSFVPASS---AELHVL 835 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------------------q~g~~vp~~~---~~~~~~ 835 (1083)
..|++|+++.+++|++++|+||||||||||||+|++..... +.-+|+++.. ..+++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45788999999999999999999999999999998653110 1113444331 112222
Q ss_pred H-------------------------------------------------------HHHhhCCcchhH-----Hhchhhh
Q 001405 836 D-------------------------------------------------------GIYTRMGASDSI-----QQGRSTF 855 (1083)
Q Consensus 836 ~-------------------------------------------------------~i~~~~~~~d~~-----~~~~stf 855 (1083)
+ .++..+|+.+.. ......+
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rgl 337 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGI 337 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCC
Confidence 2 223333332211 1112345
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch--HHHHHhhh
Q 001405 856 LEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP--KIADIKTK 923 (1083)
Q Consensus 856 ~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~--~l~~l~~~ 923 (1083)
++++++...+... +.+|+++++|||++|||+..+..+.. +++.+.+..|.|+|+++|++ ++.++.|+
T Consensus 338 SGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~-~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 338 SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVK-CLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred CcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHH-HHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 6666665555544 68999999999999999999998864 55556543589999999985 55555543
No 383
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=3.7e-12 Score=156.34 Aligned_cols=143 Identities=16% Similarity=0.207 Sum_probs=103.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccccc---cc-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSAE---LH- 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~~---~~- 833 (1083)
.+.++++|+..+.+|++++|.||.||||||||+.+++-.. +.++-+||+++..- ++
T Consensus 42 ~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~LTV 121 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPTLTV 121 (613)
T ss_pred cceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEcccccccccccH
Confidence 4789999999999999999999999999999999985431 12233455544211 11
Q ss_pred -----------------------hHHHHHhhCCcchhHHhchh-----hhH-HHHHHHHHHHHhCCCCcEEEEeCCCCCC
Q 001405 834 -----------------------VLDGIYTRMGASDSIQQGRS-----TFL-EELNEASYILRNCTAQSLVIVDELGRGT 884 (1083)
Q Consensus 834 -----------------------~~~~i~~~~~~~d~~~~~~s-----tf~-~e~~~~~~il~~~~~~sLvllDEp~~Gt 884 (1083)
.++.++..+|..+-....+. ..+ +|.++++-.+..+++|+++++||||+||
T Consensus 122 ~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGL 201 (613)
T KOG0061|consen 122 RETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGL 201 (613)
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCc
Confidence 24556666665532222222 122 4677777778889999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCch--HHHHHhh
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYP--KIADIKT 922 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~--~l~~l~~ 922 (1083)
|...+..+. .+++.+++ .|++||++=|.+ ++-.+-|
T Consensus 202 DS~sA~~vv-~~Lk~lA~-~grtVi~tIHQPss~lf~lFD 239 (613)
T KOG0061|consen 202 DSFSALQVV-QLLKRLAR-SGRTVICTIHQPSSELFELFD 239 (613)
T ss_pred chhhHHHHH-HHHHHHHh-CCCEEEEEEeCCcHHHHHHHh
Confidence 999998885 56777787 499999999997 4444444
No 384
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.30 E-value=9.9e-12 Score=153.12 Aligned_cols=143 Identities=18% Similarity=0.181 Sum_probs=99.7
Q ss_pred cc-ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhcccccccccccc-
Q 001405 776 LL-DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSFVPASSAEL- 832 (1083)
Q Consensus 776 ~~-~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~vp~~~~~~- 832 (1083)
|+ ++.+++|++|.+++|+.++|+||+||||||+++.+...- +..+++ +||++..-+
T Consensus 338 y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~-~V~Qd~~LF~ 416 (567)
T COG1132 338 YPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG-IVSQDPLLFS 416 (567)
T ss_pred cCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc-EEcccceeec
Confidence 44 578999999999999999999999999999999997432 233444 777653211
Q ss_pred -chHHHH---------------HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 833 -HVLDGI---------------YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 833 -~~~~~i---------------~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
++.++| ....++.|. +..+-..++++.+|+..+++. +.+|+++||||||+++
T Consensus 417 ~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSal 496 (567)
T COG1132 417 GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSAL 496 (567)
T ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEecccccc
Confidence 122221 111122222 222334677777777777776 6889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
|+.....+..++. .+.+ +.|+|+++|.+....-+|
T Consensus 497 D~~tE~~I~~~l~-~l~~--~rT~iiIaHRlsti~~aD 531 (567)
T COG1132 497 DTETEALIQDALK-KLLK--GRTTLIIAHRLSTIKNAD 531 (567)
T ss_pred CHHhHHHHHHHHH-HHhc--CCEEEEEeccHhHHHhCC
Confidence 9998888866655 3443 568899999987665444
No 385
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.29 E-value=6.9e-12 Score=133.05 Aligned_cols=134 Identities=14% Similarity=0.063 Sum_probs=81.8
Q ss_pred cccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----hccc----cccc--cccc--------------cchH--HHH
Q 001405 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----QVGS----FVPA--SSAE--------------LHVL--DGI 838 (1083)
Q Consensus 785 i~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----q~g~----~vp~--~~~~--------------~~~~--~~i 838 (1083)
+.+++.+| +.+|+||||+||||+|..|....... ..|. ++.. ..+. .... +.+
T Consensus 15 ~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 93 (198)
T cd03276 15 LQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVLSQDMA 93 (198)
T ss_pred eEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHHHHHHH
Confidence 44454555 88999999999999999986432100 0000 0000 0000 0001 112
Q ss_pred HhhCCcchhHHhchhhhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEe
Q 001405 839 YTRMGASDSIQQGRSTFLEELNEASYILRN-----CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH-KKCMVLFVT 912 (1083)
Q Consensus 839 ~~~~~~~d~~~~~~stf~~e~~~~~~il~~-----~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~-~~~~vl~~T 912 (1083)
...+...+.......+++.++++...++.. +.+|+++|||||++|+|+.....+...+.+...+. .++++|++|
T Consensus 94 ~~~l~~~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~t 173 (198)
T cd03276 94 RSFLTSNKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITP 173 (198)
T ss_pred HHHhccccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 222222333445567788888887766654 37999999999999999988877765444433221 246899999
Q ss_pred CchHHHH
Q 001405 913 HYPKIAD 919 (1083)
Q Consensus 913 H~~~l~~ 919 (1083)
|+++.+.
T Consensus 174 h~~~~i~ 180 (198)
T cd03276 174 QDISGLA 180 (198)
T ss_pred Ccccccc
Confidence 9988664
No 386
>PLN03232 ABC transporter C family member; Provisional
Probab=99.27 E-value=4.6e-11 Score=160.87 Aligned_cols=143 Identities=15% Similarity=0.081 Sum_probs=101.0
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------hcccccccccc--ccchHHH----------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------QVGSFVPASSA--ELHVLDG---------- 837 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------q~g~~vp~~~~--~~~~~~~---------- 837 (1083)
+.++++|++|++++|+.++|+||+|||||||++.|++..... +.-.|||++.. .-++.++
T Consensus 629 ~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~~~~e 708 (1495)
T PLN03232 629 SKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVSWIFNATVRENILFGSDFESE 708 (1495)
T ss_pred CCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCccccccccHHHHhhcCCccCHH
Confidence 357999999999999999999999999999999997643221 11245665521 1122222
Q ss_pred ----HHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Q 001405 838 ----IYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLL 901 (1083)
Q Consensus 838 ----i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~ 901 (1083)
++...+..+++. .+-..++++.+++..++++ ..+++++|||||++++|+..+..+...++..+.
T Consensus 709 ~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l 788 (1495)
T PLN03232 709 RYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL 788 (1495)
T ss_pred HHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh
Confidence 222233333332 1123577888877777776 688999999999999999998888777666543
Q ss_pred hCCCcEEEEEeCchHHHHHhh
Q 001405 902 EHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 902 ~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.+.|+|++||..+....+|
T Consensus 789 --~~kT~IlvTH~~~~l~~aD 807 (1495)
T PLN03232 789 --KGKTRVLVTNQLHFLPLMD 807 (1495)
T ss_pred --cCCEEEEEECChhhHHhCC
Confidence 4789999999987765444
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.26 E-value=2.6e-11 Score=133.30 Aligned_cols=68 Identities=4% Similarity=0.005 Sum_probs=51.8
Q ss_pred hhhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 853 STFLEELNEASYILRNC-----TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 853 stf~~e~~~~~~il~~~-----~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+++++++...+.+.+ .+|+++|+|||++|+|+.....+.. ++..+.+ .|.++|++||+.++...++
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~-~i~~~~~-~g~~vi~isH~~~~~~~~d 226 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVAS-YIREQAG-PNFQFIVISLKEEFFSKAD 226 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHH-HHHHhcc-CCcEEEEEECCHHHHhhCC
Confidence 56677777766666653 3589999999999999988877754 5555554 4889999999988876554
No 388
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.26 E-value=1.5e-11 Score=164.20 Aligned_cols=143 Identities=11% Similarity=0.107 Sum_probs=97.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH----------------------------------------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------------------- 818 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------------------- 818 (1083)
.+|++|++|++++|+.++|+||+||||||++++|.++.-.
T Consensus 1181 ~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1260 (1466)
T PTZ00265 1181 VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSL 1260 (1466)
T ss_pred CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 4799999999999999999999999999999999875432
Q ss_pred ----------------------------------hhcccccccccc--ccchHHHH---------------HhhCCcchh
Q 001405 819 ----------------------------------AQVGSFVPASSA--ELHVLDGI---------------YTRMGASDS 847 (1083)
Q Consensus 819 ----------------------------------aq~g~~vp~~~~--~~~~~~~i---------------~~~~~~~d~ 847 (1083)
.+.-++||++.. .-++.++| ....++.+.
T Consensus 1261 ~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~f 1340 (1466)
T PTZ00265 1261 TKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEF 1340 (1466)
T ss_pred ccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHH
Confidence 011234555421 11222222 111222222
Q ss_pred HH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 848 IQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 848 ~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
+. .+-..++++.+|+..|+++ +.+|+++||||||++||+.....+..++ ..+....+.|+|++||.+
T Consensus 1341 I~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L-~~~~~~~~~TvIiIaHRl 1419 (1466)
T PTZ00265 1341 IESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTI-VDIKDKADKTIITIAHRI 1419 (1466)
T ss_pred HHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHH-HHHhccCCCEEEEEechH
Confidence 21 1223577777777777776 6899999999999999998777775444 444312479999999999
Q ss_pred HHHHHhh
Q 001405 916 KIADIKT 922 (1083)
Q Consensus 916 ~l~~l~~ 922 (1083)
.....+|
T Consensus 1420 sti~~aD 1426 (1466)
T PTZ00265 1420 ASIKRSD 1426 (1466)
T ss_pred HHHHhCC
Confidence 7766544
No 389
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.25 E-value=1e-11 Score=167.32 Aligned_cols=142 Identities=13% Similarity=0.069 Sum_probs=99.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-------hcccccccccc--ccchHHHH-----------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA-------QVGSFVPASSA--ELHVLDGI----------- 838 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-------q~g~~vp~~~~--~~~~~~~i----------- 838 (1083)
.++++|++|++++|++++|+|||||||||||++|++..... ..-.|+|++.. ..++.++|
T Consensus 651 ~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g~i~yv~Q~~~l~~~Ti~eNI~~g~~~~~~~~ 730 (1522)
T TIGR00957 651 PPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQNDSLRENILFGKALNEKYY 730 (1522)
T ss_pred CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECCEEEEEcCCccccCCcHHHHhhcCCccCHHHH
Confidence 57999999999999999999999999999999998753211 11135665421 11222222
Q ss_pred ---HhhCCcchh-----------HHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH--HH
Q 001405 839 ---YTRMGASDS-----------IQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDY--LL 901 (1083)
Q Consensus 839 ---~~~~~~~d~-----------~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~--l~ 901 (1083)
....+..+. +......++++++++..++++ ..+++++|||||++++|+..+..+...+.+. +.
T Consensus 731 ~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~ 810 (1522)
T TIGR00957 731 QQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVL 810 (1522)
T ss_pred HHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhh
Confidence 111111111 222335678888887777776 6899999999999999999998887766642 22
Q ss_pred hCCCcEEEEEeCchHHHHHhh
Q 001405 902 EHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 902 ~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.++|+|++||+.+....+|
T Consensus 811 --~~~tvIlvTH~~~~l~~~D 829 (1522)
T TIGR00957 811 --KNKTRILVTHGISYLPQVD 829 (1522)
T ss_pred --cCCEEEEEeCChhhhhhCC
Confidence 4789999999998776443
No 390
>PLN03130 ABC transporter C family member; Provisional
Probab=99.25 E-value=9e-11 Score=158.24 Aligned_cols=142 Identities=14% Similarity=0.074 Sum_probs=101.6
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh--------cccccccccc--ccchHH------------
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ--------VGSFVPASSA--ELHVLD------------ 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq--------~g~~vp~~~~--~~~~~~------------ 836 (1083)
.++++|++|++++|+.++|+||+|||||||++.|.+...... .-.|||++.. .-++.+
T Consensus 630 ~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p~LfngTIreNI~fg~~~d~e~ 709 (1622)
T PLN03130 630 RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWIFNATVRDNILFGSPFDPER 709 (1622)
T ss_pred CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCccccCCCCHHHHHhCCCcccHHH
Confidence 578999999999999999999999999999999987653322 1245665521 111222
Q ss_pred --HHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 001405 837 --GIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902 (1083)
Q Consensus 837 --~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~ 902 (1083)
+++...++.+++. .+-..++++.+++..++++ ..+++++|||||++++|+..+..+...++..+.
T Consensus 710 y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l- 788 (1622)
T PLN03130 710 YERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL- 788 (1622)
T ss_pred HHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-
Confidence 2223333333332 2223577888777777776 688999999999999999988888776666543
Q ss_pred CCCcEEEEEeCchHHHHHhh
Q 001405 903 HKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 903 ~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+++|+|++||.......+|
T Consensus 789 -~~kTvIlVTH~l~~l~~aD 807 (1622)
T PLN03130 789 -RGKTRVLVTNQLHFLSQVD 807 (1622)
T ss_pred -cCCEEEEEECCHhHHHhCC
Confidence 4789999999987765543
No 391
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.25 E-value=8.6e-12 Score=124.07 Aligned_cols=101 Identities=19% Similarity=0.282 Sum_probs=70.9
Q ss_pred ccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhcccccccccc---ccc-----
Q 001405 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASSA---ELH----- 833 (1083)
Q Consensus 782 ~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~~---~~~----- 833 (1083)
++||+|++.+|++++|+|||||||||||++|++... ..+...++|.... .+.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 478999999999999999999999999999975432 2222234554411 111
Q ss_pred ---hHHHHHhhCCcchhHHhch----hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCC
Q 001405 834 ---VLDGIYTRMGASDSIQQGR----STFLEELNEASYILRN-CTAQSLVIVDELGR 882 (1083)
Q Consensus 834 ---~~~~i~~~~~~~d~~~~~~----stf~~e~~~~~~il~~-~~~~sLvllDEp~~ 882 (1083)
.+..++..++..+...... ..+++++++...+++. +.+|+++||||||+
T Consensus 81 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 1334566666555444444 7888887776666655 68999999999985
No 392
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.24 E-value=4.8e-11 Score=131.61 Aligned_cols=71 Identities=8% Similarity=0.034 Sum_probs=53.6
Q ss_pred hchhhhHHHHHHHHHHHHhC-----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 850 QGRSTFLEELNEASYILRNC-----TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 850 ~~~stf~~e~~~~~~il~~~-----~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
.....+++++++...+++.+ .+|+++|+|||++|+|+.....+.. ++..+. .|.++|++||..++.+.+|+
T Consensus 162 ~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~-~l~~~~--~g~~ii~iSH~~~~~~~~d~ 237 (251)
T cd03273 162 ESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGR-MIKTHF--KGSQFIVVSLKEGMFNNANV 237 (251)
T ss_pred ccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHH-HHHHHc--CCCEEEEEECCHHHHHhCCE
Confidence 44566778887776666542 5679999999999999988887754 444453 47899999999888776543
No 393
>PLN03232 ABC transporter C family member; Provisional
Probab=99.22 E-value=4.7e-11 Score=160.81 Aligned_cols=140 Identities=18% Similarity=0.163 Sum_probs=98.1
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~--~~~~ 836 (1083)
.+|++|++|++++|+.++|+|++|||||||++.|.++. -+.+.-++||++..-+ ++.+
T Consensus 1249 ~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~ 1328 (1495)
T PLN03232 1249 PPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRF 1328 (1495)
T ss_pred CcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHH
Confidence 57999999999999999999999999999999997542 1223335677663111 1111
Q ss_pred --------------HHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+.+...++.+.+. .+-+.++++.+|+..++++ +.+++++||||||+++|+....
T Consensus 1329 NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~ 1408 (1495)
T PLN03232 1329 NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDS 1408 (1495)
T ss_pred HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHH
Confidence 1233333333332 2234688888887777776 5889999999999999997766
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
.| ...++... +++|+|+++|.++...-+
T Consensus 1409 ~I-q~~L~~~~--~~~TvI~IAHRl~ti~~~ 1436 (1495)
T PLN03232 1409 LI-QRTIREEF--KSCTMLVIAHRLNTIIDC 1436 (1495)
T ss_pred HH-HHHHHHHc--CCCEEEEEeCCHHHHHhC
Confidence 66 44444433 489999999998776543
No 394
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=4.8e-11 Score=160.40 Aligned_cols=140 Identities=15% Similarity=0.143 Sum_probs=97.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhcccccccccccc--chHH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~~~~--~~~~ 836 (1083)
...|++||+|++++|+.++|+|++|||||||+++|.++.- +.+.-++||++..-+ ++.+
T Consensus 1231 ~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~ 1310 (1490)
T TIGR01271 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK 1310 (1490)
T ss_pred CcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHH
Confidence 4689999999999999999999999999999999987641 122234566652111 1111
Q ss_pred --------------HHHhhCCcchhHHh-----------chhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSIQQ-----------GRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~~-----------~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
..+.+.++.+.+.. +-..|+++.+++..++++ +.++++|||||||+++|+....
T Consensus 1311 NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~ 1390 (1490)
T TIGR01271 1311 NLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQ 1390 (1490)
T ss_pred HhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHH
Confidence 22334444333322 223578888777767766 6889999999999999997766
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.|.. .+.... .+||||++||.++....
T Consensus 1391 ~I~~-~L~~~~--~~~TvI~IaHRl~ti~~ 1417 (1490)
T TIGR01271 1391 IIRK-TLKQSF--SNCTVILSEHRVEALLE 1417 (1490)
T ss_pred HHHH-HHHHHc--CCCEEEEEecCHHHHHh
Confidence 6644 444332 47999999999876653
No 395
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.21 E-value=5.8e-11 Score=136.32 Aligned_cols=140 Identities=19% Similarity=0.308 Sum_probs=85.3
Q ss_pred ccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--Hhhccccc------------------ccc--ccccc
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--MAQVGSFV------------------PAS--SAELH 833 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--laq~g~~v------------------p~~--~~~~~ 833 (1083)
+.+..++.|+.|++..|+-++|+|||||||||+|++|++-.. ..++++|. ++. ..++.
T Consensus 85 ~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~~ps~~~av~~v~~~~~~e~~rle 164 (614)
T KOG0927|consen 85 FHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREIEPSEKQAVQAVVMETDHERKRLE 164 (614)
T ss_pred cCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccCCCchHHHHHHHhhhhHHHHHHHH
Confidence 445667889999999999999999999999999999974321 11111110 000 00000
Q ss_pred ----------------hHHHHHhh-------------------CC-cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEE
Q 001405 834 ----------------VLDGIYTR-------------------MG-ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVI 876 (1083)
Q Consensus 834 ----------------~~~~i~~~-------------------~~-~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvl 876 (1083)
-.+.++.+ +| ......+..-.|+++.+.++.+.+. ..+|+|++
T Consensus 165 ~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLL 244 (614)
T KOG0927|consen 165 YLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAALARALFQKPDLLL 244 (614)
T ss_pred HHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHHHHHHhcCCCEEE
Confidence 01112222 22 1222223334566666665555554 58999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||||+|||... ++| +-++|.+....++++++|+.+...
T Consensus 245 LDEPtnhLDleA---~~w-Lee~L~k~d~~~lVi~sh~QDfln 283 (614)
T KOG0927|consen 245 LDEPTNHLDLEA---IVW-LEEYLAKYDRIILVIVSHSQDFLN 283 (614)
T ss_pred ecCCccCCCHHH---HHH-HHHHHHhccCceEEEEecchhhhh
Confidence 999999999853 222 345565522338999999987653
No 396
>PLN03130 ABC transporter C family member; Provisional
Probab=99.21 E-value=5.7e-11 Score=160.13 Aligned_cols=141 Identities=16% Similarity=0.142 Sum_probs=98.7
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~--~~~~ 836 (1083)
..|++|++|++++|+.++|+|++|||||||++.|.++. -+.+.-++||++..-+ ++.+
T Consensus 1252 ~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIre 1331 (1622)
T PLN03130 1252 PPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRF 1331 (1622)
T ss_pred CceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHH
Confidence 47999999999999999999999999999999997542 1223334667663111 1111
Q ss_pred --------------HHHhhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+.+.+.++.+.+ ..+-+.++++.+|+..++++ +.+|+++||||+|+++|+..-.
T Consensus 1332 NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~ 1411 (1622)
T PLN03130 1332 NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDA 1411 (1622)
T ss_pred HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHH
Confidence 122233333322 22334688888887777776 6889999999999999997766
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.| ...++... .+||+|+++|.++...-+|
T Consensus 1412 ~I-q~~I~~~~--~~~TvI~IAHRL~tI~~~D 1440 (1622)
T PLN03130 1412 LI-QKTIREEF--KSCTMLIIAHRLNTIIDCD 1440 (1622)
T ss_pred HH-HHHHHHHC--CCCEEEEEeCChHHHHhCC
Confidence 66 44444443 4899999999988765443
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.21 E-value=4.4e-11 Score=124.62 Aligned_cols=121 Identities=13% Similarity=0.148 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHh-------------hccccccccccccchH-HH-HHhhCCcchhHHhchhhhHHH
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMA-------------QVGSFVPASSAELHVL-DG-IYTRMGASDSIQQGRSTFLEE 858 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~la-------------q~g~~vp~~~~~~~~~-~~-i~~~~~~~d~~~~~~stf~~e 858 (1083)
+.+|+||||+|||++|..|+...... .-..-..+..+.+.+. +. ++..++ .++ ... ++++
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~-~~~-~~~---LS~G 98 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKSYFLVLQ-GKV-EQI---LSGG 98 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECceEEecC-CcC-ccc---CCHH
Confidence 89999999999999999987543110 0000011112221110 00 111111 111 111 4445
Q ss_pred HHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 859 LNEASYILRN-----CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 859 ~~~~~~il~~-----~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
+++...+.+. +.+|+++|+|||++|+|+.....+.. ++..+.+ .|+++|++||+++....+
T Consensus 99 e~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~-~L~~~~~-~g~tiIiiSH~~~~~~~a 164 (178)
T cd03239 99 EKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSD-MIKEMAK-HTSQFIVITLKKEMFENA 164 (178)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHH-HHHHHHh-CCCEEEEEECCHHHHhhC
Confidence 5554444443 36899999999999999988877754 4555555 478999999999877643
No 398
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.19 E-value=3.9e-11 Score=150.58 Aligned_cols=140 Identities=18% Similarity=0.186 Sum_probs=93.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhccccccccc--cccch
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSFVPASS--AELHV 834 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~vp~~~--~~~~~ 834 (1083)
+..|+++++|.+++|++++|+||+||||||++..+...- +..++|. |.++. ...++
T Consensus 365 dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~igl-V~QePvlF~~tI 443 (1228)
T KOG0055|consen 365 DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGL-VSQEPVLFATTI 443 (1228)
T ss_pred cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCe-eeechhhhcccH
Confidence 458999999999999999999999999999999997532 2234442 32221 11122
Q ss_pred HHHHHh---------------hCCcchhHH---hch--------hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 835 LDGIYT---------------RMGASDSIQ---QGR--------STFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 835 ~~~i~~---------------~~~~~d~~~---~~~--------stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
.++|.- .-++.+.+. .+. -.++++++++..|+++ +.+|+++||||||++||+.
T Consensus 444 ~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~ 523 (1228)
T KOG0055|consen 444 RENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 523 (1228)
T ss_pred HHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHH
Confidence 222210 011111111 111 1256788887777776 6899999999999999986
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
... +....++.+.+ |.|+|+++|.+...+-+
T Consensus 524 se~-~Vq~ALd~~~~--grTTivVaHRLStIrna 554 (1228)
T KOG0055|consen 524 SER-VVQEALDKASK--GRTTIVVAHRLSTIRNA 554 (1228)
T ss_pred HHH-HHHHHHHHhhc--CCeEEEEeeehhhhhcc
Confidence 554 44666776654 78999999998766543
No 399
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.19 E-value=1.6e-10 Score=155.98 Aligned_cols=141 Identities=14% Similarity=0.109 Sum_probs=97.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~--~~~~ 836 (1083)
..|++||+|++++|+.++|+|++|||||||++.|.++. .+.+.-++||++..-+ ++.+
T Consensus 1299 ~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~ 1378 (1522)
T TIGR00957 1299 DLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRM 1378 (1522)
T ss_pred cccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHH
Confidence 47999999999999999999999999999999997542 1223334667653111 1111
Q ss_pred --------------HHHhhCCcchhH-----------HhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHH
Q 001405 837 --------------GIYTRMGASDSI-----------QQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~-----------~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~ 890 (1083)
+.+...++.+.+ ..+-+.++++.+|+..++++ +.+++++||||||+++|+..-.
T Consensus 1379 NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~ 1458 (1522)
T TIGR00957 1379 NLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458 (1522)
T ss_pred HcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHH
Confidence 122333333322 22234678888777777766 6889999999999999997666
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.| ...++... +++|+|+++|.++...-+|
T Consensus 1459 ~I-q~~l~~~~--~~~TvI~IAHRl~ti~~~D 1487 (1522)
T TIGR00957 1459 LI-QSTIRTQF--EDCTVLTIAHRLNTIMDYT 1487 (1522)
T ss_pred HH-HHHHHHHc--CCCEEEEEecCHHHHHhCC
Confidence 55 44444433 4899999999987765433
No 400
>PTZ00243 ABC transporter; Provisional
Probab=99.18 E-value=7.3e-11 Score=158.86 Aligned_cols=141 Identities=14% Similarity=0.144 Sum_probs=99.0
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhcccccccccccc--chHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAEL--HVLD 836 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~--~~~~ 836 (1083)
..|++||+|++.+|+.++|+|++|||||||+++|.++. -+.+.-++||++..-+ ++.+
T Consensus 1323 ~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIre 1402 (1560)
T PTZ00243 1323 PLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQ 1402 (1560)
T ss_pred CceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHH
Confidence 46999999999999999999999999999999997542 1233445677763211 1211
Q ss_pred --------------HHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHhC-CC-CcEEEEeCCCCCCCHHHH
Q 001405 837 --------------GIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRNC-TA-QSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 837 --------------~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~~-~~-~sLvllDEp~~Gtd~~~~ 889 (1083)
..+...++.+.+. .+-+.++++.+|+..+++.+ .+ +++|||||||+++|+..-
T Consensus 1403 NIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1403 NVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred HhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 1233334433322 22346888888888888774 43 799999999999999877
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..|. ..+.... .++|+|+++|.++....+|
T Consensus 1483 ~~Iq-~~L~~~~--~~~TvI~IAHRl~ti~~~D 1512 (1560)
T PTZ00243 1483 RQIQ-ATVMSAF--SAYTVITIAHRLHTVAQYD 1512 (1560)
T ss_pred HHHH-HHHHHHC--CCCEEEEEeccHHHHHhCC
Confidence 6664 4444433 4799999999997765443
No 401
>PF05190 MutS_IV: MutS family domain IV C-terminus.; InterPro: IPR007861 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the clamp domain (domain 4) found in proteins of the MutS family. The clamp domain is inserted within the core domain at the top of the lever helices. It has a beta-sheet structure [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B 1WBD_A 1WB9_A 3K0S_A 1OH6_A ....
Probab=99.18 E-value=3.4e-10 Score=104.63 Aligned_cols=90 Identities=32% Similarity=0.497 Sum_probs=84.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcceeeEecCceEEEEcccCC--CCCCcEEEeeecCCeEEEeChHHH
Q 001405 611 GQFSEVARARKAVQSAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--KVPLNWAKVNSTKKTIRYHSPEVL 688 (1083)
Q Consensus 611 g~~~eLd~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~iev~~~~--~~p~~~~~~~~~~~~~r~~~~e~~ 688 (1083)
|++++||.+++.++++.+++++++.++++.++++.+++.+..+.+|+|+||... ++|++|+.++++++.+||+|+++.
T Consensus 1 g~d~~Ld~~~~~~~~~~~~l~~~~~~~~~~~~~~~lk~~~~~~~gy~i~v~~~~~~~~p~~~~~~~~~k~~~rf~t~~l~ 80 (92)
T PF05190_consen 1 GFDEELDELREEYEEIEEELEELLEEIRKKLGIPSLKLVYIPKRGYLIEVPKSDEKKLPKDFIIVSSTKSGVRFTTPELK 80 (92)
T ss_dssp TSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TTBEEEEETTTEEEEEEETCCGGGSTTTEEEEEEESSEEEEECHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEcCceEEEEEEEccccccCCCceEEEEEEcCcEEEECHHHH
Confidence 689999999999999999999999999999999999999999999999999874 699999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 001405 689 TALDQLALANEE 700 (1083)
Q Consensus 689 ~l~~~l~~~~~~ 700 (1083)
++.+++..++++
T Consensus 81 ~L~~~~~~~~ee 92 (92)
T PF05190_consen 81 ELNEELKEAEEE 92 (92)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC
Confidence 999999888764
No 402
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.16 E-value=1.1e-10 Score=131.56 Aligned_cols=137 Identities=22% Similarity=0.260 Sum_probs=91.8
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhcccccccccccc--c
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSFVPASSAEL--H 833 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~vp~~~~~~--~ 833 (1083)
.+++|+.||||++.+|+.++|+||+|+||||+||.+-..- +-.++| .||++..-+ +
T Consensus 549 p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IG-VVPQDtvLFNdT 627 (790)
T KOG0056|consen 549 PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIG-VVPQDTVLFNDT 627 (790)
T ss_pred CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcC-cccCcceeecce
Confidence 3689999999999999999999999999999999985321 223444 577763211 1
Q ss_pred hH------------HHHHhh---CCcchhHHhch-----------hhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 834 VL------------DGIYTR---MGASDSIQQGR-----------STFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 834 ~~------------~~i~~~---~~~~d~~~~~~-----------stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
++ ++++.. -+..|.+..-. -.++++.++...|++. +..|++|+|||-|+.||+
T Consensus 628 I~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT 707 (790)
T KOG0056|consen 628 ILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDT 707 (790)
T ss_pred eeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCC
Confidence 11 112111 01111111111 1244555666666655 688999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
..-.+| .+.+..+.. +.|.|++.|-+.-
T Consensus 708 ~tER~I-QaaL~rlca--~RTtIVvAHRLST 735 (790)
T KOG0056|consen 708 NTERAI-QAALARLCA--NRTTIVVAHRLST 735 (790)
T ss_pred ccHHHH-HHHHHHHhc--CCceEEEeeeehh
Confidence 988888 566777765 6678888886654
No 403
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.14 E-value=2.1e-10 Score=127.46 Aligned_cols=141 Identities=19% Similarity=0.292 Sum_probs=101.6
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh-----------------cccccccc-cccc---chH-
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ-----------------VGSFVPAS-SAEL---HVL- 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq-----------------~g~~vp~~-~~~~---~~~- 835 (1083)
..+++.|++|.+.+|++++|+|++|+||||+||+|++...--- +...+|.+ ...+ .+.
T Consensus 395 eryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~~a~iPge~Ep~f~~~tile 474 (593)
T COG2401 395 ERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILE 474 (593)
T ss_pred eeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccchhhccCcccccccCchhHHH
Confidence 4689999999999999999999999999999999987653211 01122322 1111 222
Q ss_pred ------------HHHHhhCCcchhHHhc--hhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 001405 836 ------------DGIYTRMGASDSIQQG--RSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAYATLDYL 900 (1083)
Q Consensus 836 ------------~~i~~~~~~~d~~~~~--~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l 900 (1083)
-.|+.+.|+.|..... .+.++.+.++.+.++.. +..|.+++.||..+-||+..+..++..+-+..
T Consensus 475 hl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkisela 554 (593)
T COG2401 475 HLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELA 554 (593)
T ss_pred HHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 2456666666655432 23444555555555554 47789999999999999999999998887754
Q ss_pred HhCCCcEEEEEeCchHHHH
Q 001405 901 LEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 901 ~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ .|.|.+++||..++.+
T Consensus 555 Re-~giTlivvThrpEv~~ 572 (593)
T COG2401 555 RE-AGITLIVVTHRPEVGN 572 (593)
T ss_pred HH-hCCeEEEEecCHHHHh
Confidence 44 7999999999999876
No 404
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.14 E-value=1.1e-10 Score=139.22 Aligned_cols=142 Identities=15% Similarity=0.135 Sum_probs=94.2
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhccccccccc--cccchH
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASS--AELHVL 835 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~--~~~~~~ 835 (1083)
+..|++|++|++++|++++|+|||||||||+...+-.+- ++.+...+|-++. +.-++.
T Consensus 480 ~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 480 DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHH
Confidence 567999999999999999999999999999999985331 2222222343331 111122
Q ss_pred HHH------------------------HhhCC--cchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHH
Q 001405 836 DGI------------------------YTRMG--ASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 836 ~~i------------------------~~~~~--~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~ 888 (1083)
++| ++.+. -...+-..-+..+++.+|+..|+++ ..+|.++||||-|+.||.+
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDae- 638 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAE- 638 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchh-
Confidence 222 11111 1111111223567777777777776 6899999999999999985
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
...+....++.+.+ +.|||++.|-+.-.+-++
T Consensus 639 SE~lVq~aL~~~~~--~rTVlvIAHRLSTV~~Ad 670 (716)
T KOG0058|consen 639 SEYLVQEALDRLMQ--GRTVLVIAHRLSTVRHAD 670 (716)
T ss_pred hHHHHHHHHHHhhc--CCeEEEEehhhhHhhhcc
Confidence 44454666666665 689999999888776554
No 405
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=3.4e-10 Score=143.24 Aligned_cols=79 Identities=16% Similarity=0.216 Sum_probs=59.6
Q ss_pred hCCcch-hHHhchhhhHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 841 RMGASD-SIQQGRSTFLEELNEASYILRNCT----AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 841 ~~~~~d-~~~~~~stf~~e~~~~~~il~~~~----~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
.+|+.. .+.....++++++++...+++.+. +++|+|||||++|||+.+...+. .++..+.+ .|.++|++||++
T Consensus 814 ~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~-~~L~~l~~-~G~TVIvi~H~~ 891 (924)
T TIGR00630 814 DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLL-EVLQRLVD-QGNTVVVIEHNL 891 (924)
T ss_pred HcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeCCH
Confidence 344433 345566788888888777766643 58999999999999999888885 45566665 689999999999
Q ss_pred HHHHHh
Q 001405 916 KIADIK 921 (1083)
Q Consensus 916 ~l~~l~ 921 (1083)
++...+
T Consensus 892 ~~i~~a 897 (924)
T TIGR00630 892 DVIKTA 897 (924)
T ss_pred HHHHhC
Confidence 887543
No 406
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.13 E-value=3e-10 Score=149.77 Aligned_cols=81 Identities=17% Similarity=0.191 Sum_probs=62.7
Q ss_pred hhCCcchh-HHhchhhhHHHHHHHHHHHHhC----CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 840 TRMGASDS-IQQGRSTFLEELNEASYILRNC----TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 840 ~~~~~~d~-~~~~~stf~~e~~~~~~il~~~----~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
..+|..+. +.....++++++++...+++.+ .+|+++|||||++|||+.+...+. .++..+.+ .|.+||++||+
T Consensus 794 ~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll-~lL~~L~~-~G~TVIiIsHd 871 (1809)
T PRK00635 794 CSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALI-YVLQSLTH-QGHTVVIIEHN 871 (1809)
T ss_pred HHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHh-cCCEEEEEeCC
Confidence 34555443 4556677888888877777765 589999999999999999888885 55666766 68999999999
Q ss_pred hHHHHHhh
Q 001405 915 PKIADIKT 922 (1083)
Q Consensus 915 ~~l~~l~~ 922 (1083)
+++...++
T Consensus 872 l~~i~~aD 879 (1809)
T PRK00635 872 MHVVKVAD 879 (1809)
T ss_pred HHHHHhCC
Confidence 98876554
No 407
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.13 E-value=2.3e-10 Score=127.00 Aligned_cols=140 Identities=15% Similarity=0.094 Sum_probs=98.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-----------------------hhcccccccc-----c
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-----------------------AQVGSFVPAS-----S 829 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-----------------------aq~g~~vp~~-----~ 829 (1083)
...+.++|+|+..+|+.++|+|.+|||||||=+.+..+.-- .++- .|.++ +
T Consensus 299 ~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQ-vVFQDPygSLs 377 (534)
T COG4172 299 HLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQ-VVFQDPYGSLS 377 (534)
T ss_pred heEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhce-EEEeCCCCCCC
Confidence 35678999999999999999999999999998888654310 0000 01000 1
Q ss_pred cccchH-----------------------HHHHhhCCcc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCC
Q 001405 830 AELHVL-----------------------DGIYTRMGAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGT 884 (1083)
Q Consensus 830 ~~~~~~-----------------------~~i~~~~~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gt 884 (1083)
.++++- -..+...|.. +......-.|+++.++...|++. +.+|.+|+|||||+.|
T Consensus 378 PRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSAL 457 (534)
T COG4172 378 PRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSAL 457 (534)
T ss_pred cccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHh
Confidence 111111 1123334432 33344456799988887777776 6899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|-.-...+ ..++..|.++.|..-||+|||+....
T Consensus 458 D~SVQaQv-v~LLr~LQ~k~~LsYLFISHDL~Vvr 491 (534)
T COG4172 458 DRSVQAQV-LDLLRDLQQKHGLSYLFISHDLAVVR 491 (534)
T ss_pred hHHHHHHH-HHHHHHHHHHhCCeEEEEeccHHHHH
Confidence 98766666 56778887778999999999998876
No 408
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.12 E-value=1.7e-10 Score=123.82 Aligned_cols=65 Identities=14% Similarity=0.035 Sum_probs=47.5
Q ss_pred chhhhHHHHHHHHHHHHh-----CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeCchH
Q 001405 851 GRSTFLEELNEASYILRN-----CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKK-CMVLFVTHYPK 916 (1083)
Q Consensus 851 ~~stf~~e~~~~~~il~~-----~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~-~~vl~~TH~~~ 916 (1083)
...+++++++++..++.. +.+|+++|+|||++|+|+.....+.. ++..+.++.| .++|++||++.
T Consensus 123 ~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~-~l~~~~~~~g~~~viiith~~~ 193 (213)
T cd03277 123 DPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFD-MLVETACKEGTSQYFLITPKLL 193 (213)
T ss_pred chhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHH-HHHHHhhcCCCceEEEEchhhc
Confidence 345777888886554432 57899999999999999998888754 4444444224 57999999863
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.10 E-value=5.3e-10 Score=141.78 Aligned_cols=72 Identities=18% Similarity=0.206 Sum_probs=56.5
Q ss_pred HHhchhhhHHHHHHHHHHHHhC-CCC---cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 848 IQQGRSTFLEELNEASYILRNC-TAQ---SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 848 ~~~~~stf~~e~~~~~~il~~~-~~~---sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
+.....++++++++...+++.+ .++ +|+|||||++|||+.+...+. .++..+.+ .|.+||++||++++...+
T Consensus 824 l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~-~~L~~l~~-~G~TVIiitH~~~~i~~a 899 (943)
T PRK00349 824 LGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLL-EVLHRLVD-KGNTVVVIEHNLDVIKTA 899 (943)
T ss_pred ccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecCHHHHHhC
Confidence 4455678888888877777663 455 899999999999999888885 45666665 689999999999887543
No 410
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=4.4e-10 Score=124.86 Aligned_cols=129 Identities=16% Similarity=0.180 Sum_probs=82.8
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccccc-------ccccchHHH------------
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS-------SAELHVLDG------------ 837 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~-------~~~~~~~~~------------ 837 (1083)
+.++.+..++|.|+-..-++|+||||.||||||+.+.+ -.-|.+ ...+++|+.
T Consensus 598 gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~G--------kl~P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp 669 (807)
T KOG0066|consen 598 GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIG--------KLDPNDGELRKNHRLRIGWFDQHANEALNGEETP 669 (807)
T ss_pred CCCchhhcccccccccceeEEECCCCccHHHHHHHHhc--------CCCCCcchhhccceeeeechhhhhHHhhccccCH
Confidence 56778888999888777899999999999999998843 222211 122333322
Q ss_pred ---HHhhCCc-chhHHhchhhh--------------HHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Q 001405 838 ---IYTRMGA-SDSIQQGRSTF--------------LEELNEASYILR-NCTAQSLVIVDELGRGTSTHDGVAIAYATLD 898 (1083)
Q Consensus 838 ---i~~~~~~-~d~~~~~~stf--------------~~e~~~~~~il~-~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~ 898 (1083)
+-..+++ .+.....+.+| +++.+....++. ++..|+++||||||..||...-.+++.+|-+
T Consensus 670 ~EyLqr~FNlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIne 749 (807)
T KOG0066|consen 670 VEYLQRKFNLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINE 749 (807)
T ss_pred HHHHHHhcCCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHh
Confidence 1112222 12222222233 334333333333 3588999999999999999887777766655
Q ss_pred HHHhCCCcEEEEEeCchHHH
Q 001405 899 YLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 899 ~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+ ...||++|||-.+.
T Consensus 750 y-----~GgVi~VsHDeRLi 764 (807)
T KOG0066|consen 750 Y-----NGGVIMVSHDERLI 764 (807)
T ss_pred c-----cCcEEEEeccccee
Confidence 4 34689999998765
No 411
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.08 E-value=2.7e-09 Score=127.20 Aligned_cols=143 Identities=16% Similarity=0.178 Sum_probs=91.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------Hhhc-cccccccc-----------------cc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------MAQV-GSFVPASS-----------------AE 831 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------laq~-g~~vp~~~-----------------~~ 831 (1083)
+...+++.+|++.+|+-+.|+||||||||||+|.|+++=. .+.. -.|+|+.. ..
T Consensus 405 ~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~ 484 (604)
T COG4178 405 GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGTLREALCYPNAAPD 484 (604)
T ss_pred CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCccHHHHHhCCCCCCC
Confidence 3477889999999999999999999999999999987522 1111 12333320 00
Q ss_pred cch--HHHHHhhCCcchhHHh------chhhhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh
Q 001405 832 LHV--LDGIYTRMGASDSIQQ------GRSTFLEELNEASYILR-NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLE 902 (1083)
Q Consensus 832 ~~~--~~~i~~~~~~~d~~~~------~~stf~~e~~~~~~il~-~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~ 902 (1083)
++- .-.++..+|..+-... .-..++.+.++....++ ..++|++++|||-|+++|+.....+...+.+.|
T Consensus 485 ~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-- 562 (604)
T COG4178 485 FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-- 562 (604)
T ss_pred CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--
Confidence 111 1223344443322211 11234444444444443 369999999999999999987777754444433
Q ss_pred CCCcEEEEEeCchHHHHHhhh
Q 001405 903 HKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 903 ~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
.++++|-+.|-..+..+.+.
T Consensus 563 -p~~tvISV~Hr~tl~~~h~~ 582 (604)
T COG4178 563 -PDATVISVGHRPTLWNFHSR 582 (604)
T ss_pred -CCCEEEEeccchhhHHHHhh
Confidence 47999999999888766443
No 412
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.07 E-value=4.4e-10 Score=126.48 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=93.3
Q ss_pred cCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc------ccccccc-----cccc---------------chHHHHHhhC
Q 001405 789 AEREYCQIITGPNMGGKSCYIRQVALIGIMAQV------GSFVPAS-----SAEL---------------HVLDGIYTRM 842 (1083)
Q Consensus 789 ~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~------g~~vp~~-----~~~~---------------~~~~~i~~~~ 842 (1083)
+..|++++++||||-|||||.|++++..-.... -+|-|+. ...+ .+...|+..+
T Consensus 364 i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~~~~~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl 443 (591)
T COG1245 364 IYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPL 443 (591)
T ss_pred eecceEEEEECCCCcchHHHHHHHhccccCCCCCCccceEeecceeecCCCCCcHHHHHHHhhhhhcccchhHHhhcCcc
Confidence 456889999999999999999999876532211 1222321 0110 1123455566
Q ss_pred CcchhHHhchhhhHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 843 GASDSIQQGRSTFLE-ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 843 ~~~d~~~~~~stf~~-e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
++.+-+.+....+++ |+++++-++....+.+|.+||||.+-||.+.+...+..|-. +.+..+.+.+++-||.-+.++.
T Consensus 444 ~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR-~~e~~~kta~vVdHDi~~~dyv 522 (591)
T COG1245 444 NLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRR-FIENNEKTALVVDHDIYMIDYV 522 (591)
T ss_pred chHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHH-HHhhcCceEEEEecceehhhhh
Confidence 677777777777775 55666666666788999999999999999988888765554 5555789999999998877653
No 413
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.07 E-value=2e-09 Score=119.25 Aligned_cols=159 Identities=14% Similarity=0.121 Sum_probs=107.4
Q ss_pred eeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccc-----ccccccc--ccc
Q 001405 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGS-----FVPASSA--ELH 833 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~-----~vp~~~~--~~~ 833 (1083)
.|.+.+-|....+ ..|-++.|++++.+|+++.|+|.||||||||++.+.++.-....+. +|.++.. .-.
T Consensus 322 ~lelrnvrfay~~----~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~ 397 (546)
T COG4615 322 TLELRNVRFAYQD----NAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRK 397 (546)
T ss_pred ceeeeeeeeccCc----ccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHH
Confidence 5777776655443 2377888999999999999999999999999999876543322222 2222211 111
Q ss_pred hHHHHHhhCCc------------chhHHhchh-------------hh------HHHHHHHHHHHHhCCCCcEEEEeCCCC
Q 001405 834 VLDGIYTRMGA------------SDSIQQGRS-------------TF------LEELNEASYILRNCTAQSLVIVDELGR 882 (1083)
Q Consensus 834 ~~~~i~~~~~~------------~d~~~~~~s-------------tf------~~e~~~~~~il~~~~~~sLvllDEp~~ 882 (1083)
.+..+|+.... .+.+..... .| .++.++++.++..+.+++++++||..+
T Consensus 398 LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAA 477 (546)
T COG4615 398 LFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAA 477 (546)
T ss_pred HHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhc
Confidence 22223322111 111111111 11 145677888888889999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhc
Q 001405 883 GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924 (1083)
Q Consensus 883 Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~ 924 (1083)
.-||.-+......++-.+.+ .|.||+.+|||-.-...+|+.
T Consensus 478 DQDPaFRR~FY~~lLp~LK~-qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 478 DQDPAFRREFYQVLLPLLKE-QGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred cCChHHHHHHHHHHhHHHHH-hCCeEEEEecCchhhhhHHHH
Confidence 99999999887777777765 899999999997666556654
No 414
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.03 E-value=9.7e-10 Score=122.19 Aligned_cols=144 Identities=15% Similarity=0.118 Sum_probs=98.8
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH------------------------------hhccccccc
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM------------------------------AQVGSFVPA 827 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l------------------------------aq~g~~vp~ 827 (1083)
...+.++|+|++.+|+.++|+|.+|||||...+.|+.+..- ..++. +.+
T Consensus 22 ~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M-IFQ 100 (534)
T COG4172 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM-IFQ 100 (534)
T ss_pred ceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE-Eec
Confidence 56788999999999999999999999999998888654210 01111 111
Q ss_pred ccc-cc----ch----------------------HHHHHhhCCcch---hHHhchhhhHHHHHHHHHHHH-hCCCCcEEE
Q 001405 828 SSA-EL----HV----------------------LDGIYTRMGASD---SIQQGRSTFLEELNEASYILR-NCTAQSLVI 876 (1083)
Q Consensus 828 ~~~-~~----~~----------------------~~~i~~~~~~~d---~~~~~~stf~~e~~~~~~il~-~~~~~sLvl 876 (1083)
+.. .+ ++ .-.++.+.|..+ .+....-.++++.++...|+. .+++|+|+|
T Consensus 101 EPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLI 180 (534)
T COG4172 101 EPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLI 180 (534)
T ss_pred ccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEe
Confidence 100 00 00 112344555433 233334456776666655554 479999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH-Hhhh
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD-IKTK 923 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~-l~~~ 923 (1083)
-||||..||..-...|. .++..|..+.|..++|+|||+.+.. ++|+
T Consensus 181 ADEPTTALDVtvQaQIL-~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADr 227 (534)
T COG4172 181 ADEPTTALDVTVQAQIL-DLLKELQAELGMAILFITHDLGIVRKFADR 227 (534)
T ss_pred ecCCcchhhhhhHHHHH-HHHHHHHHHhCcEEEEEeccHHHHHHhhhh
Confidence 99999999998887774 5677777778999999999998875 5554
No 415
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=98.99 E-value=1.5e-08 Score=115.86 Aligned_cols=138 Identities=18% Similarity=0.195 Sum_probs=90.4
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH---------hhcccccccc-ccccch-------------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM---------AQVGSFVPAS-SAELHV------------- 834 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------aq~g~~vp~~-~~~~~~------------- 834 (1083)
...+.+.++|.+++|..++||||||||||+|+|+++++=.. .+...|+|+. +...+-
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPRPNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCCCcceEeccCCCccCcCcccceeecCCcHHH
Confidence 56788899999999999999999999999999999976322 1222345543 111110
Q ss_pred -------------------HHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHHHHHHH
Q 001405 835 -------------------LDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDGVAIAY 894 (1083)
Q Consensus 835 -------------------~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~~~i~~ 894 (1083)
.+.|..|=|-.|-+.....-++++.++...+++. .++|...+|||-|+..++.--..|
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i-- 651 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKI-- 651 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHH--
Confidence 1122233333333333333445555555555544 689999999999999987544333
Q ss_pred HHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 895 ATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 895 ~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.+.... -|.+.|-+||-+.+-.+
T Consensus 652 --~~~ak~-~gi~llsithrpslwk~ 674 (728)
T KOG0064|consen 652 --FQAAKD-AGISLLSITHRPSLWKY 674 (728)
T ss_pred --HHHHHh-cCceEEEeecCccHHHH
Confidence 343333 69999999999988754
No 416
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=98.96 E-value=1.2e-09 Score=111.34 Aligned_cols=157 Identities=13% Similarity=0.163 Sum_probs=92.8
Q ss_pred eeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----hc--------------c
Q 001405 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----QV--------------G 822 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----q~--------------g 822 (1083)
.|.+.+.+.-.= ...++.-|++++++.|.-.+++|.||+|||||||++++--... |. |
T Consensus 13 aievsgl~f~y~----~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sg 88 (291)
T KOG2355|consen 13 AIEVSGLQFKYK----VSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSG 88 (291)
T ss_pred eEEEeccEEecc----cCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccC
Confidence 455555543221 1347777999999999999999999999999999997422100 00 0
Q ss_pred --cccccc-------cc------ccchHHHHHhhCCcch-------------hHHhchhhhHHHHHHHHHHHHh-CCCCc
Q 001405 823 --SFVPAS-------SA------ELHVLDGIYTRMGASD-------------SIQQGRSTFLEELNEASYILRN-CTAQS 873 (1083)
Q Consensus 823 --~~vp~~-------~~------~~~~~~~i~~~~~~~d-------------~~~~~~stf~~e~~~~~~il~~-~~~~s 873 (1083)
+|+-.+ .. .++.. +++..++-.+ ++...+-..+.+.++...|+.. +.+-.
T Consensus 89 dl~YLGgeW~~~~~~agevplq~D~sae-~mifgV~g~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~Pfk 167 (291)
T KOG2355|consen 89 DLSYLGGEWSKTVGIAGEVPLQGDISAE-HMIFGVGGDDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFK 167 (291)
T ss_pred ceeEecccccccccccccccccccccHH-HHHhhccCCChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccccee
Confidence 111111 11 12222 2222222111 1111222334455555555554 45669
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccC
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTG 926 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~ 926 (1083)
+++|||.|--||...+..+..-+-+. .+.+||||+++||..+=. +.+|.
T Consensus 168 VLLLDEVTVDLDVlARadLLeFlkeE-ce~RgatIVYATHIFDGL---e~Wpt 216 (291)
T KOG2355|consen 168 VLLLDEVTVDLDVLARADLLEFLKEE-CEQRGATIVYATHIFDGL---ETWPT 216 (291)
T ss_pred EEEeeeeEeehHHHHHHHHHHHHHHH-HhhcCcEEEEEeeeccch---hhcch
Confidence 99999999999998887775444443 334899999999976532 24664
No 417
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.95 E-value=7e-10 Score=139.43 Aligned_cols=140 Identities=17% Similarity=0.172 Sum_probs=90.0
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hhhccccccccc---cccch
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MAQVGSFVPASS---AELHV 834 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------laq~g~~vp~~~---~~~~~ 834 (1083)
+.+.+++||+=-+.+|-+++|+|++||||||||+.+++-.. .++.-+||-+.. ..+++
T Consensus 802 ~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~TV 881 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPELTV 881 (1391)
T ss_pred cceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcccch
Confidence 56789999999999999999999999999999999985421 122223332221 11222
Q ss_pred ------------------------HHHHHhhCCcchhHHhch----hhhHHHHHHHHHHHH-hCCCC-cEEEEeCCCCCC
Q 001405 835 ------------------------LDGIYTRMGASDSIQQGR----STFLEELNEASYILR-NCTAQ-SLVIVDELGRGT 884 (1083)
Q Consensus 835 ------------------------~~~i~~~~~~~d~~~~~~----stf~~e~~~~~~il~-~~~~~-sLvllDEp~~Gt 884 (1083)
++.++..++..+-...-. +.++.|.+++..|.- .+.+| +||+|||||+||
T Consensus 882 rESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGL 961 (1391)
T KOG0065|consen 882 RESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGL 961 (1391)
T ss_pred HHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCc
Confidence 233333333321111111 223344444333322 24667 999999999999
Q ss_pred CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 885 STHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 885 d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
|...+..+ ..+++.+.. .|.+||.+-|-+...
T Consensus 962 DsqaA~~i-~~~lrkla~-tGqtIlCTIHQPS~~ 993 (1391)
T KOG0065|consen 962 DSQAAAIV-MRFLRKLAD-TGQTILCTIHQPSID 993 (1391)
T ss_pred cHHHHHHH-HHHHHHHHh-cCCeEEEEecCCcHH
Confidence 99877666 456777877 799999999998643
No 418
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.94 E-value=4.7e-09 Score=118.36 Aligned_cols=133 Identities=20% Similarity=0.166 Sum_probs=98.3
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHH---------------------------h-------------hcccccccc-
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIM---------------------------A-------------QVGSFVPAS- 828 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~l---------------------------a-------------q~g~~vp~~- 828 (1083)
.+|++++|+||||-||||-+|++++-... . |.--++|..
T Consensus 98 r~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~ 177 (591)
T COG1245 98 RPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVV 177 (591)
T ss_pred CCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHh
Confidence 57999999999999999999999853210 0 000011211
Q ss_pred ----------ccccchHHHHHhhCCcchhHHhchhhhHHH-HHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHH
Q 001405 829 ----------SAELHVLDGIYTRMGASDSIQQGRSTFLEE-LNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATL 897 (1083)
Q Consensus 829 ----------~~~~~~~~~i~~~~~~~d~~~~~~stf~~e-~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il 897 (1083)
...-+.+|.+..++++..-+.+..+.++++ +++++-++..+.+.++.++|||++-||..++...+..+-
T Consensus 178 KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Ir 257 (591)
T COG1245 178 KGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIR 257 (591)
T ss_pred cchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHH
Confidence 012245677888899988888899998865 555555555678899999999999999999999976555
Q ss_pred HHHHhCCCcEEEEEeCchHHHHHhhhc
Q 001405 898 DYLLEHKKCMVLFVTHYPKIADIKTKF 924 (1083)
Q Consensus 898 ~~l~~~~~~~vl~~TH~~~l~~l~~~~ 924 (1083)
+ |.+ .+.+||++.||+.+.++...+
T Consensus 258 e-l~~-~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 258 E-LAE-DGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred H-Hhc-cCCeEEEEechHHHHHHhhhe
Confidence 5 555 488999999999888766543
No 419
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.87 E-value=9.6e-09 Score=129.57 Aligned_cols=142 Identities=16% Similarity=0.178 Sum_probs=94.3
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhccccccccc--cccc
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSFVPASS--AELH 833 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~vp~~~--~~~~ 833 (1083)
.+.+|++|++|++.+|+.++|+||+||||||.+-+|-..- +..|+| .|.++. +..+
T Consensus 1001 P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~-lVsQEP~LF~~T 1079 (1228)
T KOG0055|consen 1001 PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIG-LVSQEPVLFNGT 1079 (1228)
T ss_pred CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcc-eeccCchhhccc
Confidence 3678999999999999999999999999999998874221 122332 343332 1112
Q ss_pred hHHHHHhh---------------CCcch-----------hHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCH
Q 001405 834 VLDGIYTR---------------MGASD-----------SIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 834 ~~~~i~~~---------------~~~~d-----------~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~ 886 (1083)
+.++|.-- -++.+ .+-..-..++++.+|+..|+++ +.+|+++||||-|+.||+
T Consensus 1080 IrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDs 1159 (1228)
T KOG0055|consen 1080 IRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDS 1159 (1228)
T ss_pred HHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhh
Confidence 22222110 00011 1111112456777777777776 689999999999999998
Q ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+ ...+....++.... |.|+|+++|-+...+-+|
T Consensus 1160 e-SErvVQeALd~a~~--gRT~IvIAHRLSTIqnaD 1192 (1228)
T KOG0055|consen 1160 E-SERVVQEALDRAME--GRTTIVIAHRLSTIQNAD 1192 (1228)
T ss_pred h-hHHHHHHHHHHhhc--CCcEEEEecchhhhhcCC
Confidence 5 45555777777654 899999999888776544
No 420
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.85 E-value=1e-08 Score=102.72 Aligned_cols=138 Identities=14% Similarity=0.129 Sum_probs=89.0
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh--------------------hccccc---ccc--ccc--cc
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA--------------------QVGSFV---PAS--SAE--LH 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la--------------------q~g~~v---p~~--~~~--~~ 833 (1083)
....|||+.+.|+.++|+|.||||||||.|+|++++-.. +..-.+ |.. +.+ ++
T Consensus 28 AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iG 107 (267)
T COG4167 28 AVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIG 107 (267)
T ss_pred cccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccChhhhhh
Confidence 456799999999999999999999999999998765211 100001 100 000 11
Q ss_pred h-----------------HHHHH---hhCCc-chhHHhchhhhHHHHHHHHHHHH-hCCCCcEEEEeCCCCCCCHHHHHH
Q 001405 834 V-----------------LDGIY---TRMGA-SDSIQQGRSTFLEELNEASYILR-NCTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~-----------------~~~i~---~~~~~-~d~~~~~~stf~~e~~~~~~il~-~~~~~sLvllDEp~~Gtd~~~~~~ 891 (1083)
. ..+|| ..+|. .|........++.+.++...+++ ..-+|+++|.||...+||..-...
T Consensus 108 qiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQ 187 (267)
T COG4167 108 QILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQ 187 (267)
T ss_pred hHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHH
Confidence 0 11222 22332 22222233334444444444444 368999999999999999998888
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+....++ |.++.|...|++|.+..+..
T Consensus 188 l~NL~Le-LQek~GiSyiYV~QhlG~iK 214 (267)
T COG4167 188 LINLMLE-LQEKQGISYIYVTQHIGMIK 214 (267)
T ss_pred HHHHHHH-HHHHhCceEEEEechhhHhh
Confidence 8776666 55558999999999887765
No 421
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.83 E-value=5.5e-08 Score=125.67 Aligned_cols=155 Identities=16% Similarity=0.154 Sum_probs=106.4
Q ss_pred eeeeecCccceeeecccccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH-------hhccccccccc--cc
Q 001405 761 QIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM-------AQVGSFVPASS--AE 831 (1083)
Q Consensus 761 ~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-------aq~g~~vp~~~--~~ 831 (1083)
.+.++++.-..=. .+..+.++||+|++++|+.++|+||=|||||+||..|.+=.-. ...-.|+|+.. ..
T Consensus 518 ~i~i~~~sfsW~~--~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gsiaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 518 AIEIKNGSFSWDS--ESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGSVAYVPQQPWIQN 595 (1381)
T ss_pred eEEEeeeeEecCC--CCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCeEEEeccccHhhC
Confidence 5777666433211 1345699999999999999999999999999999998642211 11124666541 11
Q ss_pred cch--------------HHHHHhhCCcchhHH-----------hchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 832 LHV--------------LDGIYTRMGASDSIQ-----------QGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 832 ~~~--------------~~~i~~~~~~~d~~~-----------~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
-++ +++++.......++. +.--+++++.+++..++++ ..+.+++|||-|++.+|
T Consensus 596 gTvreNILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVD 675 (1381)
T KOG0054|consen 596 GTVRENILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVD 675 (1381)
T ss_pred CcHHHhhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhh
Confidence 112 223333322222222 2223677888777777776 48889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+.|..|...++..+.+ +.|+|++||..+...
T Consensus 676 ahvg~~if~~ci~~~L~--~KT~ILVTHql~~L~ 707 (1381)
T KOG0054|consen 676 AHVGKHIFEECIRGLLR--GKTVILVTHQLQFLP 707 (1381)
T ss_pred HhhhHHHHHHHHHhhhc--CCEEEEEeCchhhhh
Confidence 99999999999976654 789999999777654
No 422
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.82 E-value=1.1e-08 Score=103.30 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=45.3
Q ss_pred HHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 863 SYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 863 ~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+-+.+..+..-+.|||||.+||+|.-..++ .+++..+.+ .|.-+|++||-+-+..
T Consensus 138 ~i~~~rf~~~GiYiLDEPEa~LSp~RQlel-la~l~~la~-sGaQ~IiATHSPiLlA 192 (233)
T COG3910 138 AIFHNRFNGQGIYILDEPEAALSPSRQLEL-LAILRDLAD-SGAQIIIATHSPILLA 192 (233)
T ss_pred HHHHHHhccCceEEecCccccCCHHHHHHH-HHHHHHHHh-cCCeEEEEecChhhee
Confidence 334445688899999999999999988888 467788887 7899999999987654
No 423
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.80 E-value=7.6e-09 Score=115.73 Aligned_cols=65 Identities=23% Similarity=0.240 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHHHh---CC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 855 FLEELNEASYILRN---CT--AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 855 f~~e~~~~~~il~~---~~--~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
+++++++...+... +. +|+++|+|||++|+|+.....+... +..+.+ ++++|++||++.+..+++
T Consensus 171 lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~-l~~~~~--~~tii~isH~~~~~~~~d 240 (276)
T cd03241 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKK-LKELSR--SHQVLCITHLPQVAAMAD 240 (276)
T ss_pred cChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHH-HHHHhC--CCEEEEEechHHHHHhcC
Confidence 55666665554432 22 9999999999999999888777554 444443 689999999998766543
No 424
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.77 E-value=1.1e-07 Score=110.58 Aligned_cols=138 Identities=17% Similarity=0.166 Sum_probs=94.7
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHH--------hhc----cccccccc-cccch----------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIM--------AQV----GSFVPASS-AELHV---------- 834 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l--------aq~----g~~vp~~~-~~~~~---------- 834 (1083)
+..+..|++|++.+|+-++||||||||||+|||.+|++=.. ..- -.|+|++. ...+-
T Consensus 447 g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQrPYmt~GTLRdQvIYP~~ 526 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQRPYMTLGTLRDQVIYPLK 526 (659)
T ss_pred CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecCCCCccccchhheeeccCc
Confidence 45667789999999999999999999999999999875321 111 23555541 11110
Q ss_pred ----------------------HHHHHhhCCcch--hHHhchhhhHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHH
Q 001405 835 ----------------------LDGIYTRMGASD--SIQQGRSTFLE-ELNEASYILRNCTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 835 ----------------------~~~i~~~~~~~d--~~~~~~stf~~-e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
..+|..|.|-.| ........++. |+++++.+--..++|.+.||||-|+++|...-
T Consensus 527 ~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE 606 (659)
T KOG0060|consen 527 AEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVE 606 (659)
T ss_pred cccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHH
Confidence 123555666544 44455566665 55555555555799999999999999997544
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
.++ +. .+.+ .|.|.|-+.|-..+...
T Consensus 607 ~~~-Yr---~~r~-~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 607 GAL-YR---KCRE-MGITFISVGHRKSLWKF 632 (659)
T ss_pred HHH-HH---HHHH-cCCeEEEeccHHHHHhh
Confidence 444 33 3334 69999999999888764
No 425
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.72 E-value=4.2e-08 Score=115.05 Aligned_cols=141 Identities=16% Similarity=0.167 Sum_probs=98.5
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHH---------------------HHhhccccccccccccc------
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG---------------------IMAQVGSFVPASSAELH------ 833 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~---------------------~laq~g~~vp~~~~~~~------ 833 (1083)
...|+||++.+|||++|.|-=|+|+|-+++.|.++. -+.+...|||.+...-+
T Consensus 274 ~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~s 353 (500)
T COG1129 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS 353 (500)
T ss_pred ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCc
Confidence 466899999999999999999999999999997532 11222346665532211
Q ss_pred hHHH--------------------------HHhhCCc-chhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCC
Q 001405 834 VLDG--------------------------IYTRMGA-SDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTS 885 (1083)
Q Consensus 834 ~~~~--------------------------i~~~~~~-~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd 885 (1083)
+.++ ...+++. ..+.....++++++-+|...+.+. +++|+++||||||+|.|
T Consensus 354 I~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGID 433 (500)
T COG1129 354 IAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGID 433 (500)
T ss_pred HHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcc
Confidence 1111 1111221 112223456778888887777766 58999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCcEEEEEeCch-HHHHHhhh
Q 001405 886 THDGVAIAYATLDYLLEHKKCMVLFVTHYP-KIADIKTK 923 (1083)
Q Consensus 886 ~~~~~~i~~~il~~l~~~~~~~vl~~TH~~-~l~~l~~~ 923 (1083)
......| +.++..|.. .|..||++|-++ |+..++|+
T Consensus 434 VGAK~eI-y~li~~lA~-~G~ail~iSSElpEll~~~DR 470 (500)
T COG1129 434 VGAKAEI-YRLIRELAA-EGKAILMISSELPELLGLSDR 470 (500)
T ss_pred cchHHHH-HHHHHHHHH-CCCEEEEEeCChHHHHhhCCE
Confidence 9888888 678888887 688887777764 66667765
No 426
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=6e-08 Score=109.01 Aligned_cols=139 Identities=18% Similarity=0.136 Sum_probs=89.5
Q ss_pred cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--------------------HHhhccccccccccccch--
Q 001405 777 LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASSAELHV-- 834 (1083)
Q Consensus 777 ~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--------------------~laq~g~~vp~~~~~~~~-- 834 (1083)
+.++++++++|++..|+.++|+||.|+||||++|.+-... .+....+.||++..-+.-
T Consensus 274 ~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti 353 (497)
T COG5265 274 PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTI 353 (497)
T ss_pred ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhH
Confidence 3679999999999999999999999999999999985321 122333456765322110
Q ss_pred H------------HHHHhh---CCcchhHHhchh-----------hhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHH
Q 001405 835 L------------DGIYTR---MGASDSIQQGRS-----------TFLEELNEASYILRN-CTAQSLVIVDELGRGTSTH 887 (1083)
Q Consensus 835 ~------------~~i~~~---~~~~d~~~~~~s-----------tf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~ 887 (1083)
+ +.+... ....+.+..... ..+++.+|...|.+. +.+|+++++||-|+.||+.
T Consensus 354 ~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 354 AYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 0 001000 001111111110 123445555555554 6899999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 888 DGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 888 ~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.-.+| .+-++.+. .|.|.|++-|-+.-.
T Consensus 434 te~~i-q~~l~~~~--~~rttlviahrlsti 461 (497)
T COG5265 434 TEQAI-QAALREVS--AGRTTLVIAHRLSTI 461 (497)
T ss_pred HHHHH-HHHHHHHh--CCCeEEEEeehhhhc
Confidence 88888 44555554 478899999976543
No 427
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=98.67 E-value=1.9e-07 Score=112.37 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=52.6
Q ss_pred hhhHHHHHHHHHHHH----hCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 853 STFLEELNEASYILR----NCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 853 stf~~e~~~~~~il~----~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.|++++..|...++. ..+.+.|.||||||.||-+.|-..+. .++..|.. .|.|||++.|++++..-+|
T Consensus 821 tTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl-~VL~rLvd-~GnTViVIEHNLdVIk~AD 892 (935)
T COG0178 821 TTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLL-EVLHRLVD-KGNTVIVIEHNLDVIKTAD 892 (935)
T ss_pred ccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHH-HHHHHHHh-CCCEEEEEecccceEeecC
Confidence 356665544444333 35778999999999999999999984 67777887 7999999999999876443
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.67 E-value=5.4e-08 Score=99.52 Aligned_cols=156 Identities=13% Similarity=0.128 Sum_probs=98.2
Q ss_pred cCccceeeecc--cccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------------
Q 001405 766 SGRHPVLDTIL--LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------------- 817 (1083)
Q Consensus 766 ~~rhP~l~~~~--~~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------------- 817 (1083)
+-||..++... |.-.+.+.++++.+.|+|-+++|.+|||||-.-|.|+++.-
T Consensus 5 DIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RR 84 (330)
T COG4170 5 DIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERR 84 (330)
T ss_pred cccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhh
Confidence 34455554322 33456788999999999999999999999999999985420
Q ss_pred --Hhhcc---------cc-------------ccccc------cccchH----HHHHhhCCcchhHHhchhhhH-----HH
Q 001405 818 --MAQVG---------SF-------------VPASS------AELHVL----DGIYTRMGASDSIQQGRSTFL-----EE 858 (1083)
Q Consensus 818 --laq~g---------~~-------------vp~~~------~~~~~~----~~i~~~~~~~d~~~~~~stf~-----~e 858 (1083)
.++-. |. +|... .++++- -.++-++|..|.-.- +++|- +|
T Consensus 85 k~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDI-M~SYP~ElTeGE 163 (330)
T COG4170 85 KLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDI-MRSYPYELTEGE 163 (330)
T ss_pred hhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHH-HHhCcchhccCc
Confidence 11100 11 11110 011111 124556666543222 12222 23
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH-HHhhh
Q 001405 859 LNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA-DIKTK 923 (1083)
Q Consensus 859 ~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~-~l~~~ 923 (1083)
-+....++..+.+|.|+|.||||..+++.....|+. ++..+.+..|.+|++++||.... +.+++
T Consensus 164 ~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifR-LLs~mNQn~~TtILL~s~Dl~~is~W~d~ 228 (330)
T COG4170 164 CQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFR-LLSRLNQNSNTTILLISHDLQMISQWADK 228 (330)
T ss_pred ceeeeeehhhccCCceEeccCCCcccCccHHHHHHH-HHHHhhccCCceEEEEcccHHHHHHHhhh
Confidence 333434445578999999999999999999988854 56667776799999999997543 44444
No 429
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=98.62 E-value=1.3e-07 Score=125.43 Aligned_cols=68 Identities=18% Similarity=0.223 Sum_probs=53.0
Q ss_pred hhhHHHHHHHHHHHHhCC----CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 853 STFLEELNEASYILRNCT----AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 853 stf~~e~~~~~~il~~~~----~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
.|++++..+...++..+. .+.|+||||||.||++.|...+. .+++.|.+ .|.|||++.|++++..-+|
T Consensus 1698 ~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll-~~l~~L~~-~g~tvivieH~~~~i~~aD 1769 (1809)
T PRK00635 1698 SSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALL-VQLRTLVS-LGHSVIYIDHDPALLKQAD 1769 (1809)
T ss_pred CccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHH-HHHHHHHh-cCCeEEEEeCCHHHHHhCC
Confidence 466665555555544432 36899999999999999999985 56777887 7999999999999987654
No 430
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.55 E-value=6.9e-08 Score=107.77 Aligned_cols=137 Identities=20% Similarity=0.237 Sum_probs=81.1
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHH--HHhhcccccc-----------------ccccccc-----
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--IMAQVGSFVP-----------------ASSAELH----- 833 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~--~laq~g~~vp-----------------~~~~~~~----- 833 (1083)
++-.+.+.++.|-.|+-++|+||||-|||||||.|+.-. +..++...+. ++..++.
T Consensus 276 Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~lLeee 355 (807)
T KOG0066|consen 276 GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLALLEEE 355 (807)
T ss_pred cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHHHHHH
Confidence 444555778888889999999999999999999997422 1122211100 0000000
Q ss_pred -----------------------------------hHHHHHhhCCcchhHHh-chhhhHHHHHHHHHHHHh-CCCCcEEE
Q 001405 834 -----------------------------------VLDGIYTRMGASDSIQQ-GRSTFLEELNEASYILRN-CTAQSLVI 876 (1083)
Q Consensus 834 -----------------------------------~~~~i~~~~~~~d~~~~-~~stf~~e~~~~~~il~~-~~~~sLvl 876 (1083)
-..+|+.-+|.+-.+.. ....|+++.+-...++++ ...|.|++
T Consensus 356 ~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLARALflEPTLLM 435 (807)
T KOG0066|consen 356 AKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLARALFLEPTLLM 435 (807)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHHHHHhcCceeee
Confidence 01123333333222211 122355544333333333 47899999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 877 VDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 877 lDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
|||||..||.. ++.| +-.||.. ...|.||++||..+.+
T Consensus 436 LDEPTNHLDLN---AVIW-LdNYLQg-WkKTLLIVSHDQgFLD 473 (807)
T KOG0066|consen 436 LDEPTNHLDLN---AVIW-LDNYLQG-WKKTLLIVSHDQGFLD 473 (807)
T ss_pred ecCCccccccc---eeee-hhhHHhh-hhheeEEEecccchHH
Confidence 99999999964 2222 4466654 7789999999987654
No 431
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=2.8e-07 Score=106.07 Aligned_cols=149 Identities=18% Similarity=0.107 Sum_probs=92.5
Q ss_pred Cccceeeecc------ccc-ccccccccccCCceEEEEEcCCCCCchhHHHHHHH-HH---------------HHhhccc
Q 001405 767 GRHPVLDTIL------LDN-FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVAL-IG---------------IMAQVGS 823 (1083)
Q Consensus 767 ~rhP~l~~~~------~~~-~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~-~~---------------~laq~g~ 823 (1083)
..||++...+ .+. ++..+++++++.-.-++++|+||+||||++|++.+ +. +.+|.-+
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~r~ri~~f~Qhhv 437 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHPRLRIKYFAQHHV 437 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecccceecchhHhhh
Confidence 4588776533 123 56677888877777789999999999999999863 11 1111100
Q ss_pred c-----ccc------cc-c-ccchHHHHHhhCCcchhH-HhchhhhHHHHHHH-HHHHHhCCCCcEEEEeCCCCCCCHHH
Q 001405 824 F-----VPA------SS-A-ELHVLDGIYTRMGASDSI-QQGRSTFLEELNEA-SYILRNCTAQSLVIVDELGRGTSTHD 888 (1083)
Q Consensus 824 ~-----vp~------~~-~-~~~~~~~i~~~~~~~d~~-~~~~stf~~e~~~~-~~il~~~~~~sLvllDEp~~Gtd~~~ 888 (1083)
- |.+ .. . .-.-+.+-+.++|+...+ ...+.+++++.+-. +.+.....+|-|++|||||+-||...
T Consensus 438 d~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ds 517 (582)
T KOG0062|consen 438 DFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDS 517 (582)
T ss_pred hHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHH
Confidence 0 000 00 0 000122345567765443 33456677665444 44444468999999999999999876
Q ss_pred HHHHHHHHHHHHHhCCCcEEEEEeCchHHHHH
Q 001405 889 GVAIAYATLDYLLEHKKCMVLFVTHYPKIADI 920 (1083)
Q Consensus 889 ~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l 920 (1083)
--+++.+ |.. .+-.||++|||.++...
T Consensus 518 l~AL~~A----l~~-F~GGVv~VSHd~~fi~~ 544 (582)
T KOG0062|consen 518 LGALAKA----LKN-FNGGVVLVSHDEEFISS 544 (582)
T ss_pred HHHHHHH----HHh-cCCcEEEEECcHHHHhh
Confidence 6666544 433 44568999999998863
No 432
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=98.50 E-value=5.3e-07 Score=97.37 Aligned_cols=51 Identities=20% Similarity=0.305 Sum_probs=35.1
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
..+.+++||||+.++||......++. ++..+. .++-+|++||...+...++
T Consensus 156 ~~~~p~~ilDEvd~~LD~~~~~~l~~-~l~~~~--~~~Q~ii~Th~~~~~~~a~ 206 (220)
T PF02463_consen 156 YKPSPFLILDEVDAALDEQNRKRLAD-LLKELS--KQSQFIITTHNPEMFEDAD 206 (220)
T ss_dssp CS--SEEEEESTTTTS-HHHHHHHHH-HHHHHT--TTSEEEEE-S-HHHHTT-S
T ss_pred cccccccccccccccccccccccccc-cccccc--ccccccccccccccccccc
Confidence 56789999999999999988877754 444443 3578999999998876553
No 433
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.50 E-value=3.3e-07 Score=118.60 Aligned_cols=138 Identities=18% Similarity=0.217 Sum_probs=96.5
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH--------------------Hhhccccccccc--------
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI--------------------MAQVGSFVPASS-------- 829 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~--------------------laq~g~~vp~~~-------- 829 (1083)
...|++||+|.+++|+-+||+|.-|||||||+..+-.++- +..-.+.+|++.
T Consensus 1152 lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR 1231 (1381)
T KOG0054|consen 1152 LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVR 1231 (1381)
T ss_pred CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccc
Confidence 3589999999999999999999999999999999865542 222224567662
Q ss_pred cccchHH-----H---HHhhC-----------CcchhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCCCCCCHHHH
Q 001405 830 AELHVLD-----G---IYTRM-----------GASDSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 830 ~~~~~~~-----~---i~~~~-----------~~~d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~~Gtd~~~~ 889 (1083)
..+.+++ + .+.+. |....+..+-+.|+.+.+|+.-+.++ +.+..+++|||.|++.|+..-
T Consensus 1232 ~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD 1311 (1381)
T KOG0054|consen 1232 FNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 1311 (1381)
T ss_pred cccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHH
Confidence 1222221 1 12222 23333445556899999998777776 578899999999999998654
Q ss_pred HHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
.-| ...++.-- ++||||.+-|..+-.
T Consensus 1312 ~lI-Q~tIR~~F--~dcTVltIAHRl~TV 1337 (1381)
T KOG0054|consen 1312 ALI-QKTIREEF--KDCTVLTIAHRLNTV 1337 (1381)
T ss_pred HHH-HHHHHHHh--cCCeEEEEeeccchh
Confidence 444 55554322 379999999976544
No 434
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=98.48 E-value=3.4e-07 Score=101.36 Aligned_cols=109 Identities=21% Similarity=0.256 Sum_probs=60.0
Q ss_pred eEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHH---HH------------HhhCCcchhHHhchhhhHH
Q 001405 793 YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLD---GI------------YTRMGASDSIQQGRSTFLE 857 (1083)
Q Consensus 793 ~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~---~i------------~~~~~~~d~~~~~~stf~~ 857 (1083)
.-++|.||||||||||+|.+++.......-..+.. ..+...+ .+ ..++.+.++..+ ..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g--~~v~~~d~~~ei~~~~~~~~q~~~~~r~~v~~~~~k-----~~ 184 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRG--KKVGIVDERSEIAGCVNGVPQHDVGIRTDVLDGCPK-----AE 184 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECC--EEeecchhHHHHHHHhcccccccccccccccccchH-----HH
Confidence 56899999999999999999865432110001111 1111111 11 112222111111 11
Q ss_pred HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 858 ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 858 e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
+|.. +..+.+|+++|+|||++. ....++++.+. .|.++|++||+.++.++.
T Consensus 185 ~~~~----~i~~~~P~villDE~~~~-------e~~~~l~~~~~--~G~~vI~ttH~~~~~~~~ 235 (270)
T TIGR02858 185 GMMM----LIRSMSPDVIVVDEIGRE-------EDVEALLEALH--AGVSIIATAHGRDVEDLY 235 (270)
T ss_pred HHHH----HHHhCCCCEEEEeCCCcH-------HHHHHHHHHHh--CCCEEEEEechhHHHHHH
Confidence 2222 222368999999999742 22345555553 489999999998776654
No 435
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.42 E-value=1.4e-06 Score=94.81 Aligned_cols=125 Identities=16% Similarity=0.137 Sum_probs=65.2
Q ss_pred ccCCceEEEEEcCCCCCchhHH-HHHHHHHHHhhccccccccccccchHHHHHhhCCcc--hhHHhc----------hhh
Q 001405 788 HAEREYCQIITGPNMGGKSCYI-RQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGAS--DSIQQG----------RST 854 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlL-r~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~--d~~~~~----------~st 854 (1083)
.+++|++++|+||||+|||||. +.++...--.....|+..+...-.+...+ ..+|.. +....+ .+.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~~~~~~~~~-~~~g~~~~~~~~~~~l~~~~~~~~~~~ 98 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLTTTEFIKQM-MSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH-HHhCCchHHHhhcCcEEEEEecccccC
Confidence 3677999999999999999995 55554432223334444332211112211 223321 000000 000
Q ss_pred hHHHHHHHHHHHHh--CCCCcEEEEeCCCCCC----CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 855 FLEELNEASYILRN--CTAQSLVIVDELGRGT----STHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 855 f~~e~~~~~~il~~--~~~~sLvllDEp~~Gt----d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
.......+..++.. ..+++++++|||++++ |+.....+ ..++..+.+ .|+++++ ||+..
T Consensus 99 ~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l-~~~l~~l~~-~g~tvi~-t~~~~ 163 (230)
T PRK08533 99 NSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDL-MAFFKRISS-LNKVIIL-TANPK 163 (230)
T ss_pred hHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHH-HHHHHHHHh-CCCEEEE-Eeccc
Confidence 00001112223332 2578999999999998 65544555 456666655 5776555 55544
No 436
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=98.28 E-value=1.5e-06 Score=94.66 Aligned_cols=61 Identities=20% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHh---CCCC-cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 856 LEELNEASYILRN---CTAQ-SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 856 ~~e~~~~~~il~~---~~~~-sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
+.+++++..++.. +... .++++|||..+|.|.....++ .++..+.+ .+.-+|+|||.+.+.
T Consensus 238 S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~-~~l~~~~~-~~~QviitTHSp~il 302 (303)
T PF13304_consen 238 SSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLI-ELLKELSK-KNIQVIITTHSPFIL 302 (303)
T ss_dssp -HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHH-HHHHHTGG-GSSEEEEEES-GGG-
T ss_pred CHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHH-HHHHhhCc-cCCEEEEeCccchhc
Confidence 5566665443332 3333 999999999999998877775 44444443 478999999998754
No 437
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.18 E-value=5.3e-06 Score=92.59 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=28.6
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
...|+++|+|||++++|+.....+. +.+.+ .+ .++++||+.+
T Consensus 208 ~~~~~illlDEp~a~LD~~~~~~l~----~~l~~-~~-q~ii~~~~~~ 249 (270)
T cd03242 208 SGEYPVLLLDDVLAELDLGRQAALL----DAIEG-RV-QTFVTTTDLA 249 (270)
T ss_pred hCCCcEEEEcCcchhcCHHHHHHHH----HHhhc-CC-CEEEEeCCch
Confidence 3689999999999999998776553 33433 23 3555555443
No 438
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.10 E-value=1.5e-05 Score=80.79 Aligned_cols=122 Identities=20% Similarity=0.172 Sum_probs=63.7
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHh-hccccccccccccchHHHH--HhhCCcchhHHh--ch-hh-hHHHHHHHHHHH
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMA-QVGSFVPASSAELHVLDGI--YTRMGASDSIQQ--GR-ST-FLEELNEASYIL 866 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~la-q~g~~vp~~~~~~~~~~~i--~~~~~~~d~~~~--~~-st-f~~e~~~~~~il 866 (1083)
+++|+||||+||||+++.++...... ..-.|+..+.......... +...+..+.... .. .. ............
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERL 80 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHH
Confidence 46899999999999999997655321 1112333332111111110 111111111000 00 00 111222333344
Q ss_pred HhCCCCcEEEEeCCCCCCCHH---------HHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 867 RNCTAQSLVIVDELGRGTSTH---------DGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 867 ~~~~~~sLvllDEp~~Gtd~~---------~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
....++.++++||+..-++.. ........+.+.+.+ .++++|+++|...
T Consensus 81 ~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 81 RERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred HhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 445788999999999544332 223344566665544 6999999999865
No 439
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.05 E-value=1.7e-05 Score=83.08 Aligned_cols=121 Identities=12% Similarity=0.107 Sum_probs=66.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHh-hccccccccccccchHHHHHhhCCcchhH--Hh--------chhhhHHHHHH-
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMA-QVGSFVPASSAELHVLDGIYTRMGASDSI--QQ--------GRSTFLEELNE- 861 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~la-q~g~~vp~~~~~~~~~~~i~~~~~~~d~~--~~--------~~stf~~e~~~- 861 (1083)
+++|.||.|+|||||.-+++.-.... .-..|+..+...-.+. +-+..+|..-.. .. ....++.+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~~~~~~~-~~~~~~g~~~~~l~~~g~l~~~d~~~~~~s~~~~~~ 79 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEESPEELI-ENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCHHHHH-HHHHHcCCChHHHHhcCCeEEEecCccccchhhhhh
Confidence 36899999999999998876543321 1223443322111111 122233322110 00 11111222111
Q ss_pred ----HHHHHH--hCCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCcEEEEEeCchHH
Q 001405 862 ----ASYILR--NCTAQSLVIVDELGRGTS---THDGVAIAYATLDYLLEHKKCMVLFVTHYPKI 917 (1083)
Q Consensus 862 ----~~~il~--~~~~~sLvllDEp~~Gtd---~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l 917 (1083)
+..+.. ...+++++++|||+..+| ......+ ..++..+.+ .|+++|+++|....
T Consensus 80 ~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i-~~l~~~l~~-~g~tvi~v~~~~~~ 142 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEI-RRLLFALKR-FGVTTLLTSEQSGL 142 (187)
T ss_pred hHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHH-HHHHHHHHH-CCCEEEEEeccccC
Confidence 111111 236789999999999998 4434433 556777766 68999999998764
No 440
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.05 E-value=3.2e-05 Score=84.44 Aligned_cols=126 Identities=14% Similarity=0.077 Sum_probs=67.8
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHH-HhhccccccccccccchHHHHHhhCCc--chhHHhch-----------h
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGI-MAQVGSFVPASSAELHVLDGIYTRMGA--SDSIQQGR-----------S 853 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-laq~g~~vp~~~~~~~~~~~i~~~~~~--~d~~~~~~-----------s 853 (1083)
.+.+|.+++|+|++|+|||||..+++.-.. -..-+.|+..+...-.+..+ +..+|. .+.+..+. +
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~-~~~~g~~~~~~~~~g~l~i~~~~~~~~~ 99 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQ-MESVKIDISDFFLWGYLRIFPLNTEGFE 99 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHH-HHHCCCChhHHHhCCCceEEeccccccc
Confidence 457799999999999999999999864332 22333455444322222221 222331 11111111 1
Q ss_pred hhHHHHHHHHHHHHh---CCCCcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 854 TFLEELNEASYILRN---CTAQSLVIVDELGRGTS---THDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 854 tf~~e~~~~~~il~~---~~~~sLvllDEp~~Gtd---~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
.....+.++...+.. ..+++++++|||+..++ ......+.. .+..+.+ .++++++++|...
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~-~l~~l~~-~g~tvllt~~~~~ 166 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLT-EAKNLVD-LGKTILITLHPYA 166 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHH-HHHHHHh-CCCEEEEEecCCc
Confidence 111222232222222 24889999999996544 333223322 2344454 6889999999754
No 441
>PRK13695 putative NTPase; Provisional
Probab=98.03 E-value=1.6e-05 Score=82.72 Aligned_cols=51 Identities=14% Similarity=0.290 Sum_probs=32.7
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
..+++++++|||+. ++..+ .... ..+..+.+ .+..+|+++|+.....+.++
T Consensus 94 l~~~~~lllDE~~~-~e~~~-~~~~-~~l~~~~~-~~~~~i~v~h~~~~~~~~~~ 144 (174)
T PRK13695 94 LEEADVIIIDEIGK-MELKS-PKFV-KAVEEVLD-SEKPVIATLHRRSVHPFVQE 144 (174)
T ss_pred cCCCCEEEEECCCc-chhhh-HHHH-HHHHHHHh-CCCeEEEEECchhhHHHHHH
Confidence 46899999999742 33322 2232 33344444 68899999999766555554
No 442
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.96 E-value=4.4e-05 Score=74.57 Aligned_cols=116 Identities=17% Similarity=0.089 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHhh-ccccccccccccchHHHHHhhCCcchhHHhch--hhhHHHHHHHHHHHHh
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQ-VGSFVPASSAELHVLDGIYTRMGASDSIQQGR--STFLEELNEASYILRN 868 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~laq-~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~--stf~~e~~~~~~il~~ 868 (1083)
+..++|+||+|+||||+++.++....... ...++.++........... ........ ..-..........+.
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~- 75 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL-----LIIVGGKKASGSGELRLRLALALAR- 75 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH-----hhhhhccCCCCCHHHHHHHHHHHHH-
Confidence 56899999999999999999875443322 1122222221111111000 00000000 011111111111221
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHH-----HHHHHHHhCCCcEEEEEeCc
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAY-----ATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~-----~il~~l~~~~~~~vl~~TH~ 914 (1083)
...+.+|++||+.+-.+......... ....... ..+..+|+++|.
T Consensus 76 ~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~ 125 (148)
T smart00382 76 KLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKS-EKNLTVILTTND 125 (148)
T ss_pred hcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHh-cCCCEEEEEeCC
Confidence 23369999999999999766554432 1122222 256788888884
No 443
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.88 E-value=7.2e-06 Score=77.43 Aligned_cols=35 Identities=14% Similarity=0.046 Sum_probs=31.9
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVA 813 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~ 813 (1083)
..++++++|++.+|++++|+||+|||||||++++.
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 35678999999999999999999999999999974
No 444
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.85 E-value=2e-05 Score=89.57 Aligned_cols=116 Identities=14% Similarity=0.121 Sum_probs=61.5
Q ss_pred ccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHH--HHHh----hCCcc-hhHHhchhhhHHH
Q 001405 786 NLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLD--GIYT----RMGAS-DSIQQGRSTFLEE 858 (1083)
Q Consensus 786 ~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~--~i~~----~~~~~-d~~~~~~stf~~e 858 (1083)
.+.+..|..++|+||+|||||||++.++... |.....+.+-+ ++.. .+... .....+... ..
T Consensus 138 ~~~v~~~~~ili~G~tGsGKTTll~al~~~~---------~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~--~~ 206 (308)
T TIGR02788 138 RLAIASRKNIIISGGTGSGKTTFLKSLVDEI---------PKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAK--VT 206 (308)
T ss_pred HHHhhCCCEEEEECCCCCCHHHHHHHHHccC---------CccccEEEEcCccccCCCCCCEEEEEecCCCCCcCc--cC
Confidence 3556678999999999999999999886432 22211111100 0000 00000 000001111 11
Q ss_pred HHH-HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 859 LNE-ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 859 ~~~-~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
+.+ +...+ ..+|+++++|||.. .+ . +.+++.+.. .+..++.++|..+.....++
T Consensus 207 ~~~~l~~~L--r~~pd~ii~gE~r~----~e---~-~~~l~a~~~-g~~~~i~T~Ha~~~~~~~~R 261 (308)
T TIGR02788 207 PKDLLQSCL--RMRPDRIILGELRG----DE---A-FDFIRAVNT-GHPGSITTLHAGSPEEAFEQ 261 (308)
T ss_pred HHHHHHHHh--cCCCCeEEEeccCC----HH---H-HHHHHHHhc-CCCeEEEEEeCCCHHHHHHH
Confidence 222 22233 37899999999984 12 2 345665543 34456999999876655444
No 445
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.84 E-value=2.8e-05 Score=99.32 Aligned_cols=83 Identities=16% Similarity=0.141 Sum_probs=63.8
Q ss_pred HhhCCcchh-HHhchhhhHHHHHHHHHHHHhCC-C--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 839 YTRMGASDS-IQQGRSTFLEELNEASYILRNCT-A--QSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 839 ~~~~~~~d~-~~~~~stf~~e~~~~~~il~~~~-~--~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
+..+|+... +.....++++++++...+++.+. + +.++|||||++|||+.+...+ ..++..|.+ .|.+||++||+
T Consensus 471 L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L-~~~L~~L~~-~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERL-INTLKRLRD-LGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHH-HHHHHHHHh-CCCEEEEEECC
Confidence 344555432 45677899999988888877753 3 489999999999999998888 456666776 69999999999
Q ss_pred hHHHHHhhh
Q 001405 915 PKIADIKTK 923 (1083)
Q Consensus 915 ~~l~~l~~~ 923 (1083)
+++...+|+
T Consensus 549 ~~~i~~aD~ 557 (924)
T TIGR00630 549 EETIRAADY 557 (924)
T ss_pred HHHHhhCCE
Confidence 988765543
No 446
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.81 E-value=5.8e-05 Score=85.31 Aligned_cols=130 Identities=18% Similarity=0.178 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCchhHHHHHHHHHHHhhcc-------ccccccc---cccch----HH-------------HHHhhCC
Q 001405 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVG-------SFVPASS---AELHV----LD-------------GIYTRMG 843 (1083)
Q Consensus 791 ~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g-------~~vp~~~---~~~~~----~~-------------~i~~~~~ 843 (1083)
..++++.+|.||-|||||+|++++..-....| +|-|+.- ...++ .+ .+..-+.
T Consensus 366 dSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p~lnVSykpqkispK~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~ 445 (592)
T KOG0063|consen 366 DSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIPVLNVSYKPQKISPKREGTVRQLLHTKIRDAYMHPQFVNDVMKPLQ 445 (592)
T ss_pred CceeEEEEccCCcchhHHHHHHhcCCCCCccCcccccceeccccccCccccchHHHHHHHHhHhhhcCHHHHHhhhhhhh
Confidence 35789999999999999999998632111110 1222210 01111 11 1112222
Q ss_pred cchhHHhchhhhHH-HHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 844 ASDSIQQGRSTFLE-ELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 844 ~~d~~~~~~stf~~-e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
..+-+.+...++++ |+++.+.++..-.+.++.++|||.+-+|.+.+...+..+-+.+.+ .+.|-.++.||.-.+.+.
T Consensus 446 ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~AskvikRfilh-akktafvVEhdfImaTYl 523 (592)
T KOG0063|consen 446 IENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASKVIKRFILH-AKKTAFVVEHDFIMATYL 523 (592)
T ss_pred HHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHHHHHHHHHh-ccchhhhhhhHHHHHHhh
Confidence 33333444455555 445555555544667999999999999998777666666666666 577889999998777643
No 447
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.79 E-value=3.6e-05 Score=98.56 Aligned_cols=84 Identities=14% Similarity=0.142 Sum_probs=64.7
Q ss_pred HHhhCCcchh-HHhchhhhHHHHHHHHHHHHhC-CC--CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeC
Q 001405 838 IYTRMGASDS-IQQGRSTFLEELNEASYILRNC-TA--QSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTH 913 (1083)
Q Consensus 838 i~~~~~~~d~-~~~~~stf~~e~~~~~~il~~~-~~--~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH 913 (1083)
.+..+|+... +.....++++++++...+++.+ .+ +.|+|||||++|||+.+...+. .++..|.+ .|.|||++||
T Consensus 472 ~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~-~~L~~L~~-~G~TVIvVeH 549 (943)
T PRK00349 472 FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLI-ETLKHLRD-LGNTLIVVEH 549 (943)
T ss_pred HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHH-HHHHHHHh-CCCEEEEEeC
Confidence 4555666533 5667788898888888777764 34 4899999999999999998884 56666766 6999999999
Q ss_pred chHHHHHhhh
Q 001405 914 YPKIADIKTK 923 (1083)
Q Consensus 914 ~~~l~~l~~~ 923 (1083)
+++....+|+
T Consensus 550 ~~~~i~~aD~ 559 (943)
T PRK00349 550 DEDTIRAADY 559 (943)
T ss_pred CHHHHHhCCE
Confidence 9988765443
No 448
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.78 E-value=5.5e-05 Score=80.44 Aligned_cols=114 Identities=15% Similarity=0.164 Sum_probs=57.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcccccccc-ccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCC
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS-SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQ 872 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~-~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~ 872 (1083)
+++|+||+||||||+++.++........+..+-.+ ...+. .......+. ...+.....+|... +...++ .+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~-~~~~~~~i~-q~~vg~~~~~~~~~---i~~aLr--~~p 75 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV-HESKRSLIN-QREVGLDTLSFENA---LKAALR--QDP 75 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc-ccCccceee-ecccCCCccCHHHH---HHHHhc--CCc
Confidence 78999999999999999875433211111111000 00000 000000000 00011111233222 222333 579
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhh
Q 001405 873 SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTK 923 (1083)
Q Consensus 873 sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~ 923 (1083)
+++++||+. |... +..+++. .. .|..++.++|..+.....++
T Consensus 76 d~ii~gEir---d~e~----~~~~l~~-a~-~G~~v~~t~Ha~~~~~~~~R 117 (198)
T cd01131 76 DVILVGEMR---DLET----IRLALTA-AE-TGHLVMSTLHTNSAAKTIDR 117 (198)
T ss_pred CEEEEcCCC---CHHH----HHHHHHH-HH-cCCEEEEEecCCcHHHHHhH
Confidence 999999995 5432 2344443 33 58889999998776554443
No 449
>PRK09183 transposase/IS protein; Provisional
Probab=97.74 E-value=0.00011 Score=81.35 Aligned_cols=111 Identities=17% Similarity=0.240 Sum_probs=62.4
Q ss_pred ccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHH
Q 001405 782 PNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNE 861 (1083)
Q Consensus 782 ~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~ 861 (1083)
+.+++| +..|+.++|+||+|+|||+|...||..... .|.-|- .++ ...++..+.... .. ..
T Consensus 93 L~~~~~-i~~~~~v~l~Gp~GtGKThLa~al~~~a~~--~G~~v~----~~~-~~~l~~~l~~a~--~~--~~------- 153 (259)
T PRK09183 93 LRSLSF-IERNENIVLLGPSGVGKTHLAIALGYEAVR--AGIKVR----FTT-AADLLLQLSTAQ--RQ--GR------- 153 (259)
T ss_pred HhcCCc-hhcCCeEEEEeCCCCCHHHHHHHHHHHHHH--cCCeEE----EEe-HHHHHHHHHHHH--HC--Cc-------
Confidence 456677 778999999999999999999999765432 231110 011 111221111000 00 00
Q ss_pred HHHHHHh-CCCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 862 ASYILRN-CTAQSLVIVDELGRG-TSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 862 ~~~il~~-~~~~sLvllDEp~~G-td~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
...++.. ...++++++||.+.. .+. +...+...++....+ .+ .+|++|+.
T Consensus 154 ~~~~~~~~~~~~dlLiiDdlg~~~~~~-~~~~~lf~li~~r~~-~~-s~iiTsn~ 205 (259)
T PRK09183 154 YKTTLQRGVMAPRLLIIDEIGYLPFSQ-EEANLFFQVIAKRYE-KG-SMILTSNL 205 (259)
T ss_pred HHHHHHHHhcCCCEEEEcccccCCCCh-HHHHHHHHHHHHHHh-cC-cEEEecCC
Confidence 1122222 367799999999864 444 444444566665544 34 46777765
No 450
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.65 E-value=6.3e-05 Score=96.01 Aligned_cols=133 Identities=17% Similarity=0.165 Sum_probs=83.4
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHH-------------------Hh-hccccccccc---cccc--
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGI-------------------MA-QVGSFVPASS---AELH-- 833 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~-------------------la-q~g~~vp~~~---~~~~-- 833 (1083)
..+++|++.-+++|++++++||-||||||||+.+++..- +. ..-.|.+... +.++
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 467889999999999999999999999999999974320 00 0001111110 0111
Q ss_pred ---------------------------hHHHHHhhCCcc--------hhHHhchhhhHHHHHHHHHHHH-hCCCCcEEEE
Q 001405 834 ---------------------------VLDGIYTRMGAS--------DSIQQGRSTFLEELNEASYILR-NCTAQSLVIV 877 (1083)
Q Consensus 834 ---------------------------~~~~i~~~~~~~--------d~~~~~~stf~~e~~~~~~il~-~~~~~sLvll 877 (1083)
..|.++..+|+. ++..+|. +++.++...+.. .+.+++++.+
T Consensus 208 eTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGv---SGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 208 ETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGV---SGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred ehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccc---cCcccceeeeeeeeecCcceeee
Confidence 123344444432 2222222 233333333332 2578899999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 878 DELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 878 DEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
||+++|||...+..++..+.. +.+..+.|.+++-|..
T Consensus 285 De~t~GLDSsTal~iik~lr~-~a~~~~~t~~vsi~Q~ 321 (1391)
T KOG0065|consen 285 DEITRGLDSSTAFQIIKALRQ-LAHITGATALVSILQP 321 (1391)
T ss_pred ecccccccHHHHHHHHHHHHH-HHhhhcceEEEEeccC
Confidence 999999999999999766554 4554688888888874
No 451
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=97.63 E-value=0.00026 Score=83.73 Aligned_cols=132 Identities=12% Similarity=0.048 Sum_probs=74.9
Q ss_pred ccccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccc-c-cccccchHHHHH-hhCCcchhHHhch--
Q 001405 778 DNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVP-A-SSAELHVLDGIY-TRMGASDSIQQGR-- 852 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp-~-~~~~~~~~~~i~-~~~~~~d~~~~~~-- 852 (1083)
+..+.+++ |.+.+|++++|+|+||+|||||+++|+...-. ..|.+.- . ....+ ..++ ..++.. .+.+..
T Consensus 145 g~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~-~~gvI~~~Gerg~ev---~e~~~~~l~~~-~l~r~v~v 218 (438)
T PRK07721 145 GVRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSA-DLNVIALIGERGREV---REFIERDLGPE-GLKRSIVV 218 (438)
T ss_pred chhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCC-CeEEEEEEecCCccH---HHHHHhhcChh-hhcCeEEE
Confidence 45678888 99999999999999999999999998754311 1121110 0 00001 1111 111110 010000
Q ss_pred ---hhhHHHH--------HHHHHHHHhCCCCcEEEEe-----------------CC--CCCCCHHHHHHHHHHHHHHHHh
Q 001405 853 ---STFLEEL--------NEASYILRNCTAQSLVIVD-----------------EL--GRGTSTHDGVAIAYATLDYLLE 902 (1083)
Q Consensus 853 ---stf~~e~--------~~~~~il~~~~~~sLvllD-----------------Ep--~~Gtd~~~~~~i~~~il~~l~~ 902 (1083)
+.-...+ ..++.-++....+=|+++| || ++|+|+.....+ ..+++.+..
T Consensus 219 v~~~~~~~~~r~~~~~~a~~iAEyfr~~g~~Vll~~Dsltr~A~A~rEisl~~ge~P~~~G~dp~~~~~l-~~ller~~~ 297 (438)
T PRK07721 219 VATSDQPALMRIKGAYTATAIAEYFRDQGLNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAIL-PKLLERTGT 297 (438)
T ss_pred EECCCCCHHHHHHHHHHHHHHHHHHHHCCCcEEEEEeChHHHHHHHHHHHHhcCCCCccccCCHHHHHHH-HHHHHHhcC
Confidence 0000011 1133333334666788888 64 579999766555 567777753
Q ss_pred -CCCc-----EEEEEeCchH
Q 001405 903 -HKKC-----MVLFVTHYPK 916 (1083)
Q Consensus 903 -~~~~-----~vl~~TH~~~ 916 (1083)
..|. ||++.+||++
T Consensus 298 ~~~GsIT~~~TVlv~~hdm~ 317 (438)
T PRK07721 298 NASGSITAFYTVLVDGDDMN 317 (438)
T ss_pred CCCCCeeeEEEEEEECCCCC
Confidence 2574 9999999987
No 452
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.63 E-value=0.00038 Score=82.86 Aligned_cols=173 Identities=14% Similarity=0.202 Sum_probs=90.6
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc---cccccccccccchHHHHH---hhCCcchhHHhchhhhHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV---GSFVPASSAELHVLDGIY---TRMGASDSIQQGRSTFLEELNE 861 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~---g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~stf~~e~~~ 861 (1083)
.++.|++++++||||+||||++..|+......+. -++++++..+++..+.+- ..+|..-...... .+
T Consensus 252 ~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~-------~D 324 (484)
T PRK06995 252 LLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDA-------AD 324 (484)
T ss_pred cccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCc-------hh
Confidence 3456789999999999999999999976544321 235677766666655442 2233211100000 11
Q ss_pred HHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC---CC-cEEEEE-eCchHHHHHhhhccCCcceeEEEEE
Q 001405 862 ASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH---KK-CMVLFV-THYPKIADIKTKFTGSVGTYHVSYL 936 (1083)
Q Consensus 862 ~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~---~~-~~vl~~-TH~~~l~~l~~~~~~~v~~~~~~~~ 936 (1083)
....+..+.+..++++|.+|++- .+.. + ...+..+... .. ..+|=+ |+...+.+....|.. +.
T Consensus 325 l~~aL~~L~d~d~VLIDTaGr~~--~d~~-~-~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~~f~~-~~------- 392 (484)
T PRK06995 325 LRLALSELRNKHIVLIDTIGMSQ--RDRM-V-SEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQAYRG-PG------- 392 (484)
T ss_pred HHHHHHhccCCCeEEeCCCCcCh--hhHH-H-HHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHHHhcc-CC-------
Confidence 12233345667899999976653 2221 1 1112222220 11 122222 355555555444432 11
Q ss_pred eecccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 001405 937 TSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994 (1083)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~ 994 (1083)
...++|+ =.++.+.-.-.+.++...++|-..|.--+.+-+.++
T Consensus 393 -------------~~g~IlT--KlDet~~~G~~l~i~~~~~lPI~yvt~GQ~VPeDL~ 435 (484)
T PRK06995 393 -------------LAGCILT--KLDEAASLGGALDVVIRYKLPLHYVSNGQRVPEDLH 435 (484)
T ss_pred -------------CCEEEEe--CCCCcccchHHHHHHHHHCCCeEEEecCCCChhhhc
Confidence 1223332 234444445567788888888776666665544444
No 453
>PRK04296 thymidine kinase; Provisional
Probab=97.59 E-value=0.00028 Score=74.54 Aligned_cols=112 Identities=17% Similarity=0.066 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHhhcccc-c-cccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSF-V-PASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~-v-p~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~ 869 (1083)
|.+.+|+||-|+||||++..++.-...+..-.+ + |.-..+.. ...+..++|..-.. ..... ..+..+...- ..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~-~~~i~~~lg~~~~~-~~~~~-~~~~~~~~~~--~~ 76 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYG-EGKVVSRIGLSREA-IPVSS-DTDIFELIEE--EG 76 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecccccccc-CCcEecCCCCcccc-eEeCC-hHHHHHHHHh--hC
Confidence 789999999999999999877644332221111 2 21011111 12344555531110 00000 1111111111 23
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 870 ~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
.+.++|++||... ++... + ..+++.+.. .|.+|+++.++
T Consensus 77 ~~~dvviIDEaq~-l~~~~---v-~~l~~~l~~-~g~~vi~tgl~ 115 (190)
T PRK04296 77 EKIDCVLIDEAQF-LDKEQ---V-VQLAEVLDD-LGIPVICYGLD 115 (190)
T ss_pred CCCCEEEEEcccc-CCHHH---H-HHHHHHHHH-cCCeEEEEecC
Confidence 5678999999943 43321 2 346666665 79999999998
No 454
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.56 E-value=0.00019 Score=83.39 Aligned_cols=143 Identities=15% Similarity=0.161 Sum_probs=93.4
Q ss_pred ccccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHh----------------------hcccccccccc------c
Q 001405 780 FVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------------QVGSFVPASSA------E 831 (1083)
Q Consensus 780 ~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la----------------------q~g~~vp~~~~------~ 831 (1083)
..+.||||++..|+|++|.|.-|-|-+.|+-.|+++...+ ....|||.+.. .
T Consensus 272 ~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~ 351 (501)
T COG3845 272 TAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLD 351 (501)
T ss_pred ceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccC
Confidence 5567899999999999999999999999999998654111 12246776542 2
Q ss_pred cchHHHH-HhhC---------------------------Ccc-hhHHhchhhhHHHHHHHHHHHHh-CCCCcEEEEeCCC
Q 001405 832 LHVLDGI-YTRM---------------------------GAS-DSIQQGRSTFLEELNEASYILRN-CTAQSLVIVDELG 881 (1083)
Q Consensus 832 ~~~~~~i-~~~~---------------------------~~~-d~~~~~~stf~~e~~~~~~il~~-~~~~sLvllDEp~ 881 (1083)
+++.+++ +.+. ++. .+......+++++-+|..-+.+. ..+|+|+|+.+||
T Consensus 352 ~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPT 431 (501)
T COG3845 352 LSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPT 431 (501)
T ss_pred ccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCC
Confidence 2333332 1111 111 01111123445554444444443 5889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH-HHHHhhhc
Q 001405 882 RGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK-IADIKTKF 924 (1083)
Q Consensus 882 ~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~-l~~l~~~~ 924 (1083)
+|+|......|...+++ +.+ .|+.||+++-+++ +..++|+.
T Consensus 432 rGLDvgA~~~I~~~l~e-~r~-~G~AVLLiS~dLDEil~lsDrI 473 (501)
T COG3845 432 RGLDVGAIEFIHERLLE-LRD-AGKAVLLISEDLDEILELSDRI 473 (501)
T ss_pred ccccHHHHHHHHHHHHH-HHh-cCCEEEEEehhHHHHHHhhhee
Confidence 99999877777666665 444 6899999988874 45666653
No 455
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.56 E-value=0.00017 Score=83.19 Aligned_cols=96 Identities=16% Similarity=0.191 Sum_probs=58.1
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhh---ccccccccccccchHHHHH---hhCCcchhHHhchhh
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQ---VGSFVPASSAELHVLDGIY---TRMGASDSIQQGRST 854 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq---~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~st 854 (1083)
++++.++.++.|.+++|+||||+||||++..|+......+ ...++..+..+++-.+.+- ..+|+.-........
T Consensus 126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~ 205 (374)
T PRK14722 126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGD 205 (374)
T ss_pred hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCccc
Confidence 3445555667789999999999999999999987554332 1234555555555444432 233332111111111
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCC
Q 001405 855 FLEELNEASYILRNCTAQSLVIVDELGRG 883 (1083)
Q Consensus 855 f~~e~~~~~~il~~~~~~sLvllDEp~~G 883 (1083)
+...+....+.++||+|++|+.
T Consensus 206 -------l~~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 206 -------LQLALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred -------HHHHHHHhcCCCEEEEcCCCCC
Confidence 1233444567899999999876
No 456
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.48 E-value=8.5e-05 Score=62.89 Aligned_cols=31 Identities=29% Similarity=0.462 Sum_probs=24.1
Q ss_pred cccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 785 i~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
+.|+ ..|.+++|+||||+||||+|..|..+.
T Consensus 17 ~~~~-~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 17 IDFD-PRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred Eeec-CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4444 235689999999999999999986543
No 457
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.47 E-value=0.00056 Score=67.38 Aligned_cols=110 Identities=18% Similarity=0.202 Sum_probs=56.6
Q ss_pred CceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCC
Q 001405 791 REYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT 870 (1083)
Q Consensus 791 ~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~ 870 (1083)
.+..++|+||.|+||||+++.++.... +.+..+ ..+.. ............ .... ............
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~--~~~~~v----~~~~~-~~~~~~~~~~~~----~~~~---~~~~~~~~~~~~ 83 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF--RPGAPF----LYLNA-SDLLEGLVVAEL----FGHF---LVRLLFELAEKA 83 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh--cCCCCe----EEEeh-hhhhhhhHHHHH----hhhh---hHhHHHHhhccC
Confidence 467899999999999999999976543 111100 00000 000000000000 0000 111222222346
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHh----CCCcEEEEEeCchH
Q 001405 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLE----HKKCMVLFVTHYPK 916 (1083)
Q Consensus 871 ~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~----~~~~~vl~~TH~~~ 916 (1083)
.+.++++||.... ++.....+ ..+++.+.. ..++.+|++|+...
T Consensus 84 ~~~~lilDe~~~~-~~~~~~~~-~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 84 KPGVLFIDEIDSL-SRGAQNAL-LRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred CCeEEEEeChhhh-hHHHHHHH-HHHHHhcCceeccCCCeEEEEecCccc
Confidence 7899999998876 33333334 333443332 14788999998765
No 458
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.45 E-value=0.001 Score=78.01 Aligned_cols=171 Identities=15% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHhh---ccccccccccccchHHHHH---hhCCcchhHHhchhhhHHHHHHHH
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQ---VGSFVPASSAELHVLDGIY---TRMGASDSIQQGRSTFLEELNEAS 863 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq---~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~stf~~e~~~~~ 863 (1083)
+.|++++|+||||+||||+++.|+...++.+ .+..+.++..+++.++.+. ..+|..-...... .+..
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~-------~dl~ 261 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDI-------ADLQ 261 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCH-------HHHH
Confidence 4588999999999999999999987544322 2344566666666655432 2334322111111 1122
Q ss_pred HHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhC---CCc-EEEEEe-CchHHHHHhhhccCCcceeEEEEEee
Q 001405 864 YILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEH---KKC-MVLFVT-HYPKIADIKTKFTGSVGTYHVSYLTS 938 (1083)
Q Consensus 864 ~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~---~~~-~vl~~T-H~~~l~~l~~~~~~~v~~~~~~~~~~ 938 (1083)
..+..+.+.+++++|.+ |....+.. +.. -+..+... ... .||=+| +..++.+....|.. +..
T Consensus 262 ~al~~l~~~d~VLIDTa--Grsqrd~~-~~~-~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~~~f~~-~~~-------- 328 (420)
T PRK14721 262 LMLHELRGKHMVLIDTV--GMSQRDQM-LAE-QIAMLSQCGTQVKHLLLLNATSSGDTLDEVISAYQG-HGI-------- 328 (420)
T ss_pred HHHHHhcCCCEEEecCC--CCCcchHH-HHH-HHHHHhccCCCceEEEEEcCCCCHHHHHHHHHHhcC-CCC--------
Confidence 33444677899999976 55554432 212 22333221 112 222233 44555555555542 222
Q ss_pred cccCCCCCCCCCCceeeeEeecCCCCCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH
Q 001405 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLE 994 (1083)
Q Consensus 939 ~~~~~~~~~~~~~~~~f~ykl~~G~~~~Sygi~vA~lag~p~~vi~~A~~~~~~l~ 994 (1083)
..++|+ || ++.+.-.-.++++...|+|-..+..-+.+-+.++
T Consensus 329 ------------~~~I~T-Kl-DEt~~~G~~l~~~~~~~lPi~yvt~Gq~VP~Dl~ 370 (420)
T PRK14721 329 ------------HGCIIT-KV-DEAASLGIALDAVIRRKLVLHYVTNGQKVPEDLH 370 (420)
T ss_pred ------------CEEEEE-ee-eCCCCccHHHHHHHHhCCCEEEEECCCCchhhhh
Confidence 223322 22 2233333456677777777666655555544443
No 459
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0004 Score=86.31 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=62.2
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhc---cccccccccccchHHHHH---hhCCcchhHHhchhh
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQV---GSFVPASSAELHVLDGIY---TRMGASDSIQQGRST 854 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~---g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~st 854 (1083)
+++++++.+..|++++++||||+||||.+..|+......+. -.++.++..+++..+.+. ..+|+.-.....
T Consensus 174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~--- 250 (767)
T PRK14723 174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKD--- 250 (767)
T ss_pred hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCC---
Confidence 44556666667899999999999999999999876533321 135666666666655443 234432211111
Q ss_pred hHHHHHHHHHHHHhCCCCcEEEEeCCCCC-CCH
Q 001405 855 FLEELNEASYILRNCTAQSLVIVDELGRG-TST 886 (1083)
Q Consensus 855 f~~e~~~~~~il~~~~~~sLvllDEp~~G-td~ 886 (1083)
-.++...+..+.+.++||+|=+|+. .|.
T Consensus 251 ----~~~l~~al~~~~~~D~VLIDTAGRs~~d~ 279 (767)
T PRK14723 251 ----AADLRFALAALGDKHLVLIDTVGMSQRDR 279 (767)
T ss_pred ----HHHHHHHHHHhcCCCEEEEeCCCCCccCH
Confidence 1223445555667799999988765 343
No 460
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=97.42 E-value=0.00026 Score=83.01 Aligned_cols=131 Identities=15% Similarity=0.092 Sum_probs=72.1
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHHHHhhccc--cccccccccchHHHHHhhCCcch---h-HHhchhh
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGS--FVPASSAELHVLDGIYTRMGASD---S-IQQGRST 854 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~--~vp~~~~~~~~~~~i~~~~~~~d---~-~~~~~st 854 (1083)
+.++ .|.+.+|+.++|.|+||+|||||+++|+...-. ..|. .+..+.... .+-+...++... . +....+.
T Consensus 146 aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~-~~gvI~~iGerg~ev--~e~~~~~l~~~gl~~tvvv~~tsd 221 (432)
T PRK06793 146 SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKA-DINVISLVGERGREV--KDFIRKELGEEGMRKSVVVVATSD 221 (432)
T ss_pred EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCCC-CeEEEEeCCCCcccH--HHHHHHHhhhcccceeEEEEECCC
Confidence 4444 599999999999999999999999999764321 1111 111111111 111111222110 0 1111222
Q ss_pred hHHHHHHHHH--------HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 855 FLEELNEASY--------ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 855 f~~e~~~~~~--------il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
-+..|+..+. -++....+-||++|+||++.|+. ..+. ..+...-. .|-+..+.||...+.+
T Consensus 222 ~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reis-l~~~e~p~-~G~~~~~~s~l~~L~E 290 (432)
T PRK06793 222 ESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVD-IAVKELPI-GGKTLLMESYMKKLLE 290 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHH-HHhcCCCC-CCeeeeeeccchhHHH
Confidence 2333333222 22234788999999999999985 3332 23333332 4667777788666655
No 461
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=97.37 E-value=8.5e-05 Score=86.87 Aligned_cols=32 Identities=16% Similarity=0.089 Sum_probs=30.5
Q ss_pred cccccccccccCCceEEEEEcCCCCCchhHHH
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIR 810 (1083)
Q Consensus 779 ~~v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr 810 (1083)
..|+.+|++++.+|++++|+||+|||||||||
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA 50 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh
Confidence 36889999999999999999999999999999
No 462
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=97.30 E-value=0.00038 Score=78.96 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhc
Q 001405 857 EELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKF 924 (1083)
Q Consensus 857 ~e~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~ 924 (1083)
+|.++.+.++......++.++|||.+-||.......+.. +..|.. ...-+|++.||+.+.++...+
T Consensus 217 gelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~-IRsl~~-p~~YiIVVEHDLsVLDylSDF 282 (592)
T KOG0063|consen 217 GELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAIT-IRSLIN-PDRYIIVVEHDLSVLDYLSDF 282 (592)
T ss_pred chhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHH-HHHhhC-CCCeEEEEEeechHHHhhhcc
Confidence 355666666666788999999999999999888877654 445555 578999999999999877654
No 463
>PRK10869 recombination and repair protein; Provisional
Probab=97.30 E-value=0.0021 Score=78.83 Aligned_cols=98 Identities=20% Similarity=0.239 Sum_probs=64.4
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCC
Q 001405 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKS 949 (1083)
Q Consensus 870 ~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 949 (1083)
.+++++|+|||++|+|...+..++ .++..+.+ +++||++||++.++.+++. |+.+.. ..
T Consensus 451 ~~~~~li~DEpd~gld~~~~~~v~-~~l~~l~~--~~qvi~iTH~~~~~~~ad~--------~~~v~k-----~~----- 509 (553)
T PRK10869 451 METPALIFDEVDVGISGPTAAVVG-KLLRQLGE--STQVMCVTHLPQVAGCGHQ--------HFFVSK-----ET----- 509 (553)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHH-HHHHHHhc--CCEEEEEecCHHHHHhCCE--------EEEEec-----cc-----
Confidence 368999999999999998887775 45555543 6889999999998765432 333321 01
Q ss_pred CCceeeeEeecCCCCCCcHHHHHHHHCC---CCHHHHHHHHHHH
Q 001405 950 DQDVTYLYKVVPGVSESSFGFKVAQLAQ---LPPSCISRATVIA 990 (1083)
Q Consensus 950 ~~~~~f~ykl~~G~~~~Sygi~vA~lag---~p~~vi~~A~~~~ 990 (1083)
.+..+ |.-+.-..+.--=-++|+|.| +.+.-+..|+++.
T Consensus 510 ~~~~t--~s~i~~L~~~~R~~EiARMl~G~~~t~~~~~~A~eLl 551 (553)
T PRK10869 510 DGGMT--ETHMQPLDKKARLQELARLLGGSEVTRNTLANAKELL 551 (553)
T ss_pred cCCee--eEEEEECChhHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 12222 222222344556678999984 3677788888875
No 464
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.27 E-value=0.00083 Score=65.66 Aligned_cols=104 Identities=15% Similarity=0.183 Sum_probs=55.3
Q ss_pred EEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCcE
Q 001405 795 QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSL 874 (1083)
Q Consensus 795 ~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~sL 874 (1083)
++|+||.|+||||+.+.++... +. |- ..+... .+... ........+..+...+.....+.+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l-----~~--~~--~~i~~~-~~~~~---------~~~~~~~~i~~~~~~~~~~~~~~v 61 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL-----GF--PF--IEIDGS-ELISS---------YAGDSEQKIRDFFKKAKKSAKPCV 61 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT-----TS--EE--EEEETT-HHHTS---------STTHHHHHHHHHHHHHHHTSTSEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc-----cc--cc--cccccc-ccccc---------ccccccccccccccccccccccee
Confidence 5799999999999999987542 21 10 011110 11111 111111222222222222224899
Q ss_pred EEEeCCCCCCCHH------HHHHHHHHHHHHHHhC----CCcEEEEEeCchHH
Q 001405 875 VIVDELGRGTSTH------DGVAIAYATLDYLLEH----KKCMVLFVTHYPKI 917 (1083)
Q Consensus 875 vllDEp~~Gtd~~------~~~~i~~~il~~l~~~----~~~~vl~~TH~~~l 917 (1083)
|++||.-.-.... ....+...++..+.+. .+..+|++|++.+.
T Consensus 62 l~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~ 114 (132)
T PF00004_consen 62 LFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDK 114 (132)
T ss_dssp EEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGG
T ss_pred eeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhh
Confidence 9999986644332 3444555666666542 23688899998543
No 465
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.27 E-value=0.00091 Score=74.43 Aligned_cols=35 Identities=20% Similarity=0.131 Sum_probs=26.1
Q ss_pred cccccccccCCc-eEEEEEcCCCCCchhHHHHHHHH
Q 001405 781 VPNDTNLHAERE-YCQIITGPNMGGKSCYIRQVALI 815 (1083)
Q Consensus 781 v~ndi~l~~~~g-~i~~ItGpNgsGKSTlLr~i~~~ 815 (1083)
+.+.+...+..+ .+++|+||||+||||+++.++..
T Consensus 31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~ 66 (269)
T TIGR03015 31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKR 66 (269)
T ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHh
Confidence 445555554443 38999999999999999998643
No 466
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.26 E-value=0.0047 Score=68.62 Aligned_cols=128 Identities=13% Similarity=0.200 Sum_probs=65.8
Q ss_pred CceEEEEEcCCCCCchhHHHHHHHHHHH-hhccccccccccccchHHHHHh---hCCcchhHHhchhhhHHHHHHHHHHH
Q 001405 791 REYCQIITGPNMGGKSCYIRQVALIGIM-AQVGSFVPASSAELHVLDGIYT---RMGASDSIQQGRSTFLEELNEASYIL 866 (1083)
Q Consensus 791 ~g~i~~ItGpNgsGKSTlLr~i~~~~~l-aq~g~~vp~~~~~~~~~~~i~~---~~~~~d~~~~~~stf~~e~~~~~~il 866 (1083)
+|+.++++||||+||||+++.|+....- .....++-++..+++.+.++-. .++..-...... ..+.+...-+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~----~~l~~~l~~l 149 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE----AAMTRALTYF 149 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCH----HHHHHHHHHH
Confidence 4689999999999999999999765322 1122344444444444444332 233211100111 1222222222
Q ss_pred HhCCCCcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCcEEEE--Ee-CchHHHHHhhhcc
Q 001405 867 RNCTAQSLVIVDELGRGT-STHDGVAIAYATLDYLLEHKKCMVLF--VT-HYPKIADIKTKFT 925 (1083)
Q Consensus 867 ~~~~~~sLvllDEp~~Gt-d~~~~~~i~~~il~~l~~~~~~~vl~--~T-H~~~l~~l~~~~~ 925 (1083)
....+.++||+|-||+.- |...-..+ ..+++.. + ...++|+ +| ...++.+.+..|.
T Consensus 150 ~~~~~~D~ViIDt~Gr~~~~~~~l~el-~~~~~~~-~-~~~~~LVl~a~~~~~d~~~~~~~f~ 209 (270)
T PRK06731 150 KEEARVDYILIDTAGKNYRASETVEEM-IETMGQV-E-PDYICLTLSASMKSKDMIEIITNFK 209 (270)
T ss_pred HhcCCCCEEEEECCCCCcCCHHHHHHH-HHHHhhh-C-CCeEEEEEcCccCHHHHHHHHHHhC
Confidence 333467999999999984 43333333 2333322 2 2223433 23 3456666665554
No 467
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.25 E-value=0.00061 Score=78.73 Aligned_cols=114 Identities=15% Similarity=0.147 Sum_probs=57.0
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHhhcccccccc-ccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS-SAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN 868 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~-~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~ 868 (1083)
.++.+++|+||+||||||+|+.+.....-...+..+-.+ ...+. .......+. ...+....-+|... +..+++
T Consensus 120 ~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~-~~~~~~~i~-q~evg~~~~~~~~~---l~~~lr- 193 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV-HRNKRSLIN-QREVGLDTLSFANA---LRAALR- 193 (343)
T ss_pred hcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh-ccCccceEE-ccccCCCCcCHHHH---HHHhhc-
Confidence 346789999999999999999876432111111111100 00000 000000000 00000111123222 223343
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHH
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+|++|++||+. |+.... .+++. .. .|..++.++|-.+...
T Consensus 194 -~~pd~i~vgEir---d~~~~~----~~l~a-a~-tGh~v~~T~Ha~~~~~ 234 (343)
T TIGR01420 194 -EDPDVILIGEMR---DLETVE----LALTA-AE-TGHLVFGTLHTNSAAQ 234 (343)
T ss_pred -cCCCEEEEeCCC---CHHHHH----HHHHH-HH-cCCcEEEEEcCCCHHH
Confidence 789999999995 665443 23333 33 5888999999855443
No 468
>PRK06526 transposase; Provisional
Probab=97.24 E-value=0.001 Score=73.36 Aligned_cols=105 Identities=17% Similarity=0.213 Sum_probs=58.2
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~ 869 (1083)
..++-++|+||.|+|||+|...|+.-.. +.|.-| .+.....++..+.... ...++ ...+...
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~--~~g~~v-----~f~t~~~l~~~l~~~~----~~~~~-------~~~l~~l 157 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRAC--QAGHRV-----LFATAAQWVARLAAAH----HAGRL-------QAELVKL 157 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHH--HCCCch-----hhhhHHHHHHHHHHHH----hcCcH-------HHHHHHh
Confidence 3466789999999999999999975433 223211 1111122322221110 00111 1223334
Q ss_pred CCCcEEEEeCCCCC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 870 TAQSLVIVDELGRG-TSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 870 ~~~sLvllDEp~~G-td~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
...+|||+||++.- .+. ....+...++....+ .+ .+|++|+..
T Consensus 158 ~~~dlLIIDD~g~~~~~~-~~~~~L~~li~~r~~-~~-s~IitSn~~ 201 (254)
T PRK06526 158 GRYPLLIVDEVGYIPFEP-EAANLFFQLVSSRYE-RA-SLIVTSNKP 201 (254)
T ss_pred ccCCEEEEcccccCCCCH-HHHHHHHHHHHHHHh-cC-CEEEEcCCC
Confidence 66899999999865 344 444455666665443 33 477788763
No 469
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.24 E-value=0.0013 Score=72.12 Aligned_cols=46 Identities=22% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCCcEEEEeCCCC------CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 869 CTAQSLVIVDELGR------GTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 869 ~~~~sLvllDEp~~------Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
..++.+||+| |.+ ..|+.....+... +..+.+..|+++|+++|...
T Consensus 109 ~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~-L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 109 IRRIDLVVID-PLVSFHGVSENDNGAMDAVIKA-LRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred hcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHH-HHHHHHHhCCEEEEEeccCc
Confidence 3789999999 654 3677666666544 44455446999999999853
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.22 E-value=0.00018 Score=75.67 Aligned_cols=32 Identities=19% Similarity=0.172 Sum_probs=26.8
Q ss_pred cccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 785 TNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 785 i~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
+.+.+..|+.++|+|||||||||+++.++...
T Consensus 18 l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 18 LWLAVEARKNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34556779999999999999999999987543
No 471
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.21 E-value=0.0038 Score=67.80 Aligned_cols=128 Identities=13% Similarity=0.168 Sum_probs=64.0
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHH-hhccccccccccccch----------HHHHHh--hCCcchhHHh----
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIM-AQVGSFVPASSAELHV----------LDGIYT--RMGASDSIQQ---- 850 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-aq~g~~vp~~~~~~~~----------~~~i~~--~~~~~d~~~~---- 850 (1083)
.+.+|++++|.||+|+|||||..+++.-... ...+.|+..+...-.+ ++.... ++...|.+..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~~~~~i~~~~~~~g~~~~~~~~~~~l~i~d~~~~~~~~ 95 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEESRESIIRQAAQFGMDFEKAIEEGKLVIIDALMKEKED 95 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccCCHHHHHHHHHHhCCCHHHHhhcCCEEEEEcccccccc
Confidence 4678999999999999999999987643321 1222344332111001 111100 1111111100
Q ss_pred --chhhhHH-H-HHHHHHHHHhC-CCCcEEEEeCCCCCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeCchH
Q 001405 851 --GRSTFLE-E-LNEASYILRNC-TAQSLVIVDELGRGT--STHDGVAIAYATLDYLLEHKKCMVLFVTHYPK 916 (1083)
Q Consensus 851 --~~stf~~-e-~~~~~~il~~~-~~~sLvllDEp~~Gt--d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~ 916 (1083)
....+.. + ..++..++... ..++++++|-++.=+ ++.....+.+.+...+.+ .|+++|+++|...
T Consensus 96 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~vvIDsl~~l~~~~~~~~r~~~~~l~~~l~~-~~~tvil~~~~~~ 167 (229)
T TIGR03881 96 EWSLRELSIEELLNKVIEAKKYLGYGHARLVIDSMSAFWLDKPAMARKYSYYLKRVLNR-WNFTILLTSQYAI 167 (229)
T ss_pred ccccccCCHHHHHHHHHHHHHhhccCceEEEecCchhhhccChHHHHHHHHHHHHHHHh-CCCEEEEEecccc
Confidence 0000111 1 11122222222 246788888876532 333334455556666655 7999999999643
No 472
>PRK06893 DNA replication initiation factor; Validated
Probab=97.19 E-value=0.0013 Score=71.71 Aligned_cols=93 Identities=22% Similarity=0.239 Sum_probs=54.8
Q ss_pred eEEEEEcCCCCCchhHHHHHHHHHHHhhcc-ccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCC
Q 001405 793 YCQIITGPNMGGKSCYIRQVALIGIMAQVG-SFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTA 871 (1083)
Q Consensus 793 ~i~~ItGpNgsGKSTlLr~i~~~~~laq~g-~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~ 871 (1083)
..+.|.||.|+|||+|+..|+.-..-.... .|++... . ..+.. .++....+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~--------~--------------~~~~~------~~~~~~~~ 91 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSK--------S--------------QYFSP------AVLENLEQ 91 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHH--------h--------------hhhhH------HHHhhccc
Confidence 467999999999999999998654322111 1222210 0 00000 12333456
Q ss_pred CcEEEEeCCCCCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 872 QSLVIVDELGRGT-STHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 872 ~sLvllDEp~~Gt-d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
.++|+|||+.... +...... ...+++.+.+ .|.++|++|++.
T Consensus 92 ~dlLilDDi~~~~~~~~~~~~-l~~l~n~~~~-~~~~illits~~ 134 (229)
T PRK06893 92 QDLVCLDDLQAVIGNEEWELA-IFDLFNRIKE-QGKTLLLISADC 134 (229)
T ss_pred CCEEEEeChhhhcCChHHHHH-HHHHHHHHHH-cCCcEEEEeCCC
Confidence 7999999998865 3332333 3566776665 566666666654
No 473
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=97.16 E-value=0.0037 Score=77.21 Aligned_cols=97 Identities=26% Similarity=0.277 Sum_probs=62.4
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhhhccCCcceeEEEEEeecccCCCCCCCCC
Q 001405 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSD 950 (1083)
Q Consensus 871 ~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 950 (1083)
+++++|+|||++|+|+..+..+.. ++..+.+ +.+||++||++.++.++++ |+.+.. ...+ +
T Consensus 462 ~~~~lilDEp~~gld~~~~~~~~~-~l~~l~~--~~~vi~iTH~~~~~~~ad~--------~~~l~k-----~~~~---~ 522 (563)
T TIGR00634 462 AVTTLIFDEVDVGVSGETAQAIAK-KLAQLSE--RHQVLCVTHLPQVAAHADA--------HFKVEK-----EGLD---G 522 (563)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHH-HHHHHhc--CCEEEEEEChHHHHHhcCe--------EEEEEE-----ccCC---C
Confidence 469999999999999988887754 5555643 7899999999988865432 222211 0101 1
Q ss_pred CceeeeEeecCCCCCCcHHHHHHHHC-C--CCHHHHHHHHHHH
Q 001405 951 QDVTYLYKVVPGVSESSFGFKVAQLA-Q--LPPSCISRATVIA 990 (1083)
Q Consensus 951 ~~~~f~ykl~~G~~~~Sygi~vA~la-g--~p~~vi~~A~~~~ 990 (1083)
...+-... ..+.--=-++|+|. | +.+.-+..|+++.
T Consensus 523 ~t~s~i~~----L~~~~r~~EiArml~G~~~t~~~~~~A~~ll 561 (563)
T TIGR00634 523 RTATRVRP----LSGEERVAELARMLAGLEKSDLTLAHAQELL 561 (563)
T ss_pred cEEEEEEE----CCccHHHHHHHHHhCCCCccHHHHHHHHHHh
Confidence 12222222 23344567899998 4 4566788888764
No 474
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.16 E-value=0.0021 Score=74.81 Aligned_cols=122 Identities=16% Similarity=0.108 Sum_probs=65.5
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-hccccccccccccchHHHHHhhCCcc-hhHHhchhhhHHHHHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIMA-QVGSFVPASSAELHVLDGIYTRMGAS-DSIQQGRSTFLEELNEASYI 865 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-q~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~i 865 (1083)
.+.+|++++|.|++|+|||||+.+++...... .-..|+..+.. ...+..-..++|.. +++.....+. +.++...
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs-~~qi~~Ra~rlg~~~~~l~l~~e~~---le~I~~~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEES-PEQIKLRADRLGISTENLYLLAETN---LEDILAS 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcC-HHHHHHHHHHcCCCcccEEEEccCc---HHHHHHH
Confidence 35679999999999999999999997543221 12234443321 11111223345532 2211111111 2222222
Q ss_pred HHhCCCCcEEEEeCCCC----CCC-----HHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 866 LRNCTAQSLVIVDELGR----GTS-----THDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 866 l~~~~~~sLvllDEp~~----Gtd-----~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
+. ..++++|++|+... .+| ...-..++..+.+... +.++++|++.|-.
T Consensus 154 i~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak-~~~itvilvghvt 210 (372)
T cd01121 154 IE-ELKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK-ERNIPIFIVGHVT 210 (372)
T ss_pred HH-hcCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH-HcCCeEEEEeecc
Confidence 22 25789999999732 222 1222233344445444 4799999998853
No 475
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.15 E-value=0.0032 Score=68.63 Aligned_cols=30 Identities=23% Similarity=0.088 Sum_probs=26.0
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGI 817 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~ 817 (1083)
.+..|+++.|+||+|+|||||+.+++....
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~ 44 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQ 44 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHee
Confidence 356799999999999999999999986543
No 476
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=97.14 E-value=0.00083 Score=89.82 Aligned_cols=30 Identities=23% Similarity=0.105 Sum_probs=25.7
Q ss_pred ccccCCceEEEEEcCCCCCchhHHHHHHHH
Q 001405 786 NLHAEREYCQIITGPNMGGKSCYIRQVALI 815 (1083)
Q Consensus 786 ~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~ 815 (1083)
+++.+.+++++|+|++|.|||||++.++.-
T Consensus 201 ~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~ 230 (1153)
T PLN03210 201 HLESEEVRMVGIWGSSGIGKTTIARALFSR 230 (1153)
T ss_pred ccccCceEEEEEEcCCCCchHHHHHHHHHH
Confidence 455667899999999999999999999653
No 477
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.14 E-value=0.0024 Score=76.19 Aligned_cols=87 Identities=18% Similarity=0.217 Sum_probs=50.9
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHhh---ccccccccccccchHHHHHhh---CCcchhHHhchhhhHHHHHHHH
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQ---VGSFVPASSAELHVLDGIYTR---MGASDSIQQGRSTFLEELNEAS 863 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq---~g~~vp~~~~~~~~~~~i~~~---~~~~d~~~~~~stf~~e~~~~~ 863 (1083)
+.|++++|+||+|+||||++..|+......+ -..++..+..+++-.+.+... ++..-... .....+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a-------~d~~~L~ 420 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEA-------DSAESLL 420 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEec-------CcHHHHH
Confidence 3588999999999999999999876543322 123445554444433333221 22110000 0112233
Q ss_pred HHHHhCCCCcEEEEeCCCCC
Q 001405 864 YILRNCTAQSLVIVDELGRG 883 (1083)
Q Consensus 864 ~il~~~~~~sLvllDEp~~G 883 (1083)
.++....+.++||+|.||.+
T Consensus 421 ~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 421 DLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred HHHHHhccCCEEEecCCCcc
Confidence 45555567899999999876
No 478
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.13 E-value=0.0018 Score=76.08 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCchhHHHHHHHH
Q 001405 791 REYCQIITGPNMGGKSCYIRQVALI 815 (1083)
Q Consensus 791 ~g~i~~ItGpNgsGKSTlLr~i~~~ 815 (1083)
++.-++|.||+|+||||+.|.++..
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~ 202 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHH 202 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHh
Confidence 3456899999999999999999753
No 479
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.12 E-value=0.0018 Score=70.90 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCCc
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQS 873 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~s 873 (1083)
.++|.|+.|+|||+|+..|+.-... .|..| ..++. ..++..+. .+|...-.....++..+...+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~--~g~~v----~~it~-~~l~~~l~---------~~~~~~~~~~~~~l~~l~~~d 164 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLL--RGKSV----LIITV-ADIMSAMK---------DTFSNSETSEEQLLNDLSNVD 164 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh--cCCeE----EEEEH-HHHHHHHH---------HHHhhccccHHHHHHHhccCC
Confidence 6899999999999999999864332 23211 11111 22222211 111100001123444456889
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 874 LVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 874 LvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
||+|||++.--++.....+...|+++-.. .+..+|++|..
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~-~~~~tiitSNl 204 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSS-SKRPTGMLTNS 204 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCCEEEeCCC
Confidence 99999999876666677777888886444 35667777765
No 480
>PRK06921 hypothetical protein; Provisional
Probab=97.11 E-value=0.0028 Score=70.58 Aligned_cols=101 Identities=15% Similarity=0.202 Sum_probs=58.3
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHh--hccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMA--QVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~la--q~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~ 869 (1083)
+.-++|+||.|+|||.|+.+|+.-..-. ....|++. . .++..+ .. .| ......+..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~-------~-~l~~~l------~~---~~----~~~~~~~~~~ 175 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF-------V-EGFGDL------KD---DF----DLLEAKLNRM 175 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH-------H-HHHHHH------HH---HH----HHHHHHHHHh
Confidence 4568999999999999999998654321 11123332 1 122211 00 11 1112234445
Q ss_pred CCCcEEEEeCCCC---CCC--HHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 870 TAQSLVIVDELGR---GTS--THDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 870 ~~~sLvllDEp~~---Gtd--~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
.+.+|||||++.. |.. +.........+++.... .+..+|++|+.
T Consensus 176 ~~~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~-~~k~tIitsn~ 224 (266)
T PRK06921 176 KKVEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYL-NHKPILISSEL 224 (266)
T ss_pred cCCCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHH-CCCCEEEECCC
Confidence 7789999999955 432 22233334567776554 45667888886
No 481
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.08 E-value=0.009 Score=68.94 Aligned_cols=89 Identities=11% Similarity=0.172 Sum_probs=49.2
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHhhcc---ccccccccccchHHHHHh---hCCcchhHHhchhhhHHHHHHHHHH
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVG---SFVPASSAELHVLDGIYT---RMGASDSIQQGRSTFLEELNEASYI 865 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g---~~vp~~~~~~~~~~~i~~---~~~~~d~~~~~~stf~~e~~~~~~i 865 (1083)
+.+++|+||||+||||++..|+.... .-| .++-++..+++..+++-+ .+|..-..... ...+.+....
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~--~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d----~~~L~~aL~~ 314 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFH--GKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRD----EAAMTRALTY 314 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH--HcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCC----HHHHHHHHHH
Confidence 45889999999999999999986432 222 244555444544544433 23322110011 1122222222
Q ss_pred HHhCCCCcEEEEeCCCCCCCH
Q 001405 866 LRNCTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 866 l~~~~~~sLvllDEp~~Gtd~ 886 (1083)
+....+.++||+|-+|+.-..
T Consensus 315 lk~~~~~DvVLIDTaGRs~kd 335 (436)
T PRK11889 315 FKEEARVDYILIDTAGKNYRA 335 (436)
T ss_pred HHhccCCCEEEEeCccccCcC
Confidence 222235799999998886543
No 482
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.05 E-value=0.0035 Score=74.98 Aligned_cols=123 Identities=13% Similarity=0.026 Sum_probs=65.8
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-hccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIMA-QVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-q~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il 866 (1083)
.+.+|++++|.|++|+|||||+.+++....-. .-..|+-.+... ..+..-..++|....-..-.... .+.++...+
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~-~qi~~ra~rlg~~~~~l~~~~e~--~~~~I~~~i 166 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESL-QQIKMRAIRLGLPEPNLYVLSET--NWEQICANI 166 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCH-HHHHHHHHHcCCChHHeEEcCCC--CHHHHHHHH
Confidence 46789999999999999999999986543221 112354443211 11111123444321111111111 122233333
Q ss_pred HhCCCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 867 RNCTAQSLVIVDELGRGTS---------THDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 867 ~~~~~~sLvllDEp~~Gtd---------~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
. ..++++|++|....=.. ......++..+.+... +.|+++|+++|..
T Consensus 167 ~-~~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak-~~giTvllt~hvt 222 (454)
T TIGR00416 167 E-EENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAK-TRGIAIFIVGHVT 222 (454)
T ss_pred H-hcCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHH-HhCCEEEEEeccc
Confidence 2 25789999998764211 1223333344444444 4799999999964
No 483
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.05 E-value=0.0028 Score=75.74 Aligned_cols=105 Identities=13% Similarity=0.176 Sum_probs=59.2
Q ss_pred EEEEEcCCCCCchhHHHHHHHHHHHhhcc---ccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCC
Q 001405 794 CQIITGPNMGGKSCYIRQVALIGIMAQVG---SFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCT 870 (1083)
Q Consensus 794 i~~ItGpNgsGKSTlLr~i~~~~~laq~g---~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~ 870 (1083)
-+.|.||.|+|||+|++.|+.-..-..-+ .|+++.. ++..+...+... . +.++..... .
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~----f~~~~~~~~~~~-----~-------~~~f~~~~~--~ 193 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----FLNDLVDSMKEG-----K-------LNEFREKYR--K 193 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHH----HHHHHHHHHhcc-----c-------HHHHHHHHH--h
Confidence 48999999999999999998654322111 2333321 122222221110 0 111111111 3
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe-CchHH
Q 001405 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT-HYPKI 917 (1083)
Q Consensus 871 ~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~T-H~~~l 917 (1083)
++++|++||+....+......-...++..+.+ .|..+|++| |.+..
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~-~~k~iIitsd~~p~~ 240 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQK 240 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHH-cCCeEEEECCCCHHH
Confidence 68899999999887754333323456666666 566777766 66543
No 484
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.04 E-value=0.003 Score=70.46 Aligned_cols=36 Identities=25% Similarity=0.189 Sum_probs=29.4
Q ss_pred cccccccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 781 VPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 781 v~ndi~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
.++++.-.+.+|++++|.||.|+|||||+.+++...
T Consensus 19 ~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 19 VLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred eeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 445555567889999999999999999999987544
No 485
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.00 E-value=0.0031 Score=75.39 Aligned_cols=121 Identities=19% Similarity=0.117 Sum_probs=66.4
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHHh-hccccccccccccchHHHHHhhCCcc-hhHHhchhhhHHHHHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIMA-QVGSFVPASSAELHVLDGIYTRMGAS-DSIQQGRSTFLEELNEASYI 865 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~la-q~g~~vp~~~~~~~~~~~i~~~~~~~-d~~~~~~stf~~e~~~~~~i 865 (1083)
.+.+|+++.|.|+.|+|||||+.+++...... .-..|+..+...- .+..-..++|.. +++.....+ .+.++...
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~-qi~~ra~rlg~~~~~l~~~~e~---~l~~i~~~ 151 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESAS-QIKLRAERLGLPSDNLYLLAET---NLEAILAT 151 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHH-HHHHHHHHcCCChhcEEEeCCC---CHHHHHHH
Confidence 45679999999999999999999997644321 1224554442211 111123445542 111110001 12222222
Q ss_pred HHhCCCCcEEEEeCCCCCCC---------HHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 866 LRNCTAQSLVIVDELGRGTS---------THDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 866 l~~~~~~sLvllDEp~~Gtd---------~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
+. ..++++|++|++..-.. ......++..+.+...+ .++++|+++|-
T Consensus 152 i~-~~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~ak~-~~itvilv~hv 207 (446)
T PRK11823 152 IE-EEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELMRLAKQ-RGIAVFLVGHV 207 (446)
T ss_pred HH-hhCCCEEEEechhhhccccccCCCCCHHHHHHHHHHHHHHHHH-cCCEEEEEeec
Confidence 32 24789999999864322 12223344445554444 79999999994
No 486
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=96.99 E-value=0.0035 Score=67.91 Aligned_cols=31 Identities=19% Similarity=0.060 Sum_probs=26.6
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHH
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIM 818 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l 818 (1083)
.+..|+++.|+||+|+|||||+-+++.....
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~ 45 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQL 45 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhc
Confidence 4567999999999999999999999866543
No 487
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.98 E-value=0.0071 Score=65.53 Aligned_cols=124 Identities=15% Similarity=0.227 Sum_probs=64.2
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHH-hhccccccccccccchHHHHHhhCCcc--hhHHh-------chhhh--
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIM-AQVGSFVPASSAELHVLDGIYTRMGAS--DSIQQ-------GRSTF-- 855 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-aq~g~~vp~~~~~~~~~~~i~~~~~~~--d~~~~-------~~stf-- 855 (1083)
.+.+|.+++|.|+.|+|||+|.-+++.-... ..-+.|+..+...-.+. +-+..+|.. ..+.. ....+
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 90 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERIL-GYAKSKGWDLEDYIDKSLYIVRLDPSDFKT 90 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHH-HHHHHcCCChHHHHhCCeEEEecCHHHHHh
Confidence 4567999999999999999998887643322 22234444332211111 111222211 00000 00111
Q ss_pred -HHHHHH-HHHHHHhCCCCcEEEEeCCCCCC-----CHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 856 -LEELNE-ASYILRNCTAQSLVIVDELGRGT-----STHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 856 -~~e~~~-~~~il~~~~~~sLvllDEp~~Gt-----d~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
..++.. +..++. -..++++++|=++ .+ |+.........++..+.+ .++++++++|..
T Consensus 91 ~~~~l~~~~~~~i~-~~~~~~vVIDsls-~l~~~~~~~~~~r~~l~~l~~~lk~-~~~tvll~s~~~ 154 (224)
T TIGR03880 91 SLNRIKNELPILIK-ELGASRVVIDPIS-LLETLFDDDAERRTELFRFYSSLRE-TGVTTILTSEAD 154 (224)
T ss_pred hHHHHHHHHHHHHH-HhCCCEEEEcChH-HHhhhcCCHHHHHHHHHHHHHHHHh-CCCEEEEEEccc
Confidence 111111 111222 2357899999433 22 333344444677777766 799999999964
No 488
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.98 E-value=0.0036 Score=74.26 Aligned_cols=128 Identities=13% Similarity=0.196 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCCchhHHHHHHHHHH-Hh--hccccccccccccchHHHHH---hhCCcchhHHhchhhhHHHHHHHHH
Q 001405 791 REYCQIITGPNMGGKSCYIRQVALIGI-MA--QVGSFVPASSAELHVLDGIY---TRMGASDSIQQGRSTFLEELNEASY 864 (1083)
Q Consensus 791 ~g~i~~ItGpNgsGKSTlLr~i~~~~~-la--q~g~~vp~~~~~~~~~~~i~---~~~~~~d~~~~~~stf~~e~~~~~~ 864 (1083)
+|++++++||+|+||||++-.++.... .. .-..++.++..+.+..+.+. ..++..-...... .++..
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~-------~~l~~ 292 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDP-------KELAK 292 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCH-------HhHHH
Confidence 467999999999999999998876543 21 12234555543333333322 1233221111111 22334
Q ss_pred HHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe-Cc-hHHHHHhhhcc
Q 001405 865 ILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVT-HY-PKIADIKTKFT 925 (1083)
Q Consensus 865 il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~T-H~-~~l~~l~~~~~ 925 (1083)
.+....+.++||+|-||+.-...........+++.........+++.+ .. .++.+....|.
T Consensus 293 ~l~~~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~ 355 (424)
T PRK05703 293 ALEQLRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFS 355 (424)
T ss_pred HHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhC
Confidence 444456789999999987543222222223444421111123444444 33 35555555554
No 489
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.98 E-value=0.0061 Score=65.19 Aligned_cols=42 Identities=19% Similarity=0.189 Sum_probs=30.0
Q ss_pred ccCCceEEEEEcCCCCCchhHHHHHHHHHHH-hhccccccccc
Q 001405 788 HAEREYCQIITGPNMGGKSCYIRQVALIGIM-AQVGSFVPASS 829 (1083)
Q Consensus 788 ~~~~g~i~~ItGpNgsGKSTlLr~i~~~~~l-aq~g~~vp~~~ 829 (1083)
.+..|.++.|+||+|+|||||.-+++..... ..-..|+..+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3567999999999999999999887654422 22335555553
No 490
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.97 E-value=0.0034 Score=66.19 Aligned_cols=112 Identities=24% Similarity=0.337 Sum_probs=63.0
Q ss_pred ceE-EEEEcCCCCCchhHHHHHHHHHHHhhcccccccc------ccccchHH------HHHhhCCcchhHHhchhhhHHH
Q 001405 792 EYC-QIITGPNMGGKSCYIRQVALIGIMAQVGSFVPAS------SAELHVLD------GIYTRMGASDSIQQGRSTFLEE 858 (1083)
Q Consensus 792 g~i-~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~------~~~~~~~~------~i~~~~~~~d~~~~~~stf~~e 858 (1083)
|.. ++|+||.++||||+||-|+.+.--.-. .+.|.. +..+.-.+ .+-.|+.+.|.-.+ + .+
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~-~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk--~---~g 209 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGIN-QFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPK--A---EG 209 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhcccc-ccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchH--H---HH
Confidence 444 789999999999999999876533211 222221 11111000 11122222221111 0 11
Q ss_pred HHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHhh
Q 001405 859 LNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKT 922 (1083)
Q Consensus 859 ~~~~~~il~~~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~ 922 (1083)
|. .+++ ...|.++|+||+|+-.|. .++++.+. .|..++.+-|=..+.++..
T Consensus 210 mm---maIr-sm~PEViIvDEIGt~~d~-------~A~~ta~~--~GVkli~TaHG~~iedl~k 260 (308)
T COG3854 210 MM---MAIR-SMSPEVIIVDEIGTEEDA-------LAILTALH--AGVKLITTAHGNGIEDLIK 260 (308)
T ss_pred HH---HHHH-hcCCcEEEEeccccHHHH-------HHHHHHHh--cCcEEEEeeccccHHHhhc
Confidence 11 1111 366999999999988885 34455443 5899899999877776653
No 491
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.93 E-value=0.0013 Score=72.25 Aligned_cols=33 Identities=18% Similarity=0.194 Sum_probs=27.6
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
|.-+.+..|+.++|+||+|+|||||++.|+...
T Consensus 8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l 40 (249)
T cd01128 8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAI 40 (249)
T ss_pred eeecccCCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 444567789999999999999999999987543
No 492
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.91 E-value=0.0042 Score=65.42 Aligned_cols=28 Identities=29% Similarity=0.291 Sum_probs=24.0
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHH
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGI 817 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~ 817 (1083)
.+|++++|+||.|+||||++-.++.-..
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999986554
No 493
>PRK08181 transposase; Validated
Probab=96.88 E-value=0.0031 Score=70.06 Aligned_cols=106 Identities=17% Similarity=0.218 Sum_probs=61.4
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhC
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNC 869 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~ 869 (1083)
+.++-++|+||.|+|||.|+..|+.-..- .|..|- .+. ...++..+.... .. ......+...
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~Aia~~a~~--~g~~v~----f~~-~~~L~~~l~~a~------~~-----~~~~~~l~~l 165 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAAAIGLALIE--NGWRVL----FTR-TTDLVQKLQVAR------RE-----LQLESAIAKL 165 (269)
T ss_pred hcCceEEEEecCCCcHHHHHHHHHHHHHH--cCCcee----eee-HHHHHHHHHHHH------hC-----CcHHHHHHHH
Confidence 35667999999999999999999865432 232110 011 122333221110 00 0111234445
Q ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCch
Q 001405 870 TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYP 915 (1083)
Q Consensus 870 ~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~ 915 (1083)
...+||||||++.-........+...+++...+ . ..+|++|+..
T Consensus 166 ~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~-~-~s~IiTSN~~ 209 (269)
T PRK08181 166 DKFDLLILDDLAYVTKDQAETSVLFELISARYE-R-RSILITANQP 209 (269)
T ss_pred hcCCEEEEeccccccCCHHHHHHHHHHHHHHHh-C-CCEEEEcCCC
Confidence 678999999998654434455555677776544 3 4678888763
No 494
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.86 E-value=0.0015 Score=86.45 Aligned_cols=68 Identities=15% Similarity=0.082 Sum_probs=51.7
Q ss_pred hchhhhHHHHHHHHHHHHhC-----------CCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHH
Q 001405 850 QGRSTFLEELNEASYILRNC-----------TAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIA 918 (1083)
Q Consensus 850 ~~~stf~~e~~~~~~il~~~-----------~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~ 918 (1083)
....++++++.....+...+ .+|+++||||||.|+|+.....+ ..++..+.. .|++|+|+||+.++.
T Consensus 946 r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~-~~~l~~l~~-~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 946 RPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRA-IGILDAIRE-GSKMIGIISHVPEFR 1023 (1042)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHH-HHHHHHHHh-CCCEEEEEeCcHHHH
Confidence 44667888887765544332 26899999999999999766666 556677766 689999999999886
Q ss_pred H
Q 001405 919 D 919 (1083)
Q Consensus 919 ~ 919 (1083)
.
T Consensus 1024 ~ 1024 (1042)
T TIGR00618 1024 E 1024 (1042)
T ss_pred H
Confidence 5
No 495
>PRK12377 putative replication protein; Provisional
Probab=96.84 E-value=0.0048 Score=67.81 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=62.6
Q ss_pred eEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHhCCCC
Q 001405 793 YCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQ 872 (1083)
Q Consensus 793 ~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~~~~~ 872 (1083)
.-++|.||.|+|||.|+..|+.... +-|..| ..++. ..++..+.. ++... .....++..+...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~--~~g~~v----~~i~~-~~l~~~l~~---------~~~~~-~~~~~~l~~l~~~ 164 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLL--AKGRSV----IVVTV-PDVMSRLHE---------SYDNG-QSGEKFLQELCKV 164 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH--HcCCCe----EEEEH-HHHHHHHHH---------HHhcc-chHHHHHHHhcCC
Confidence 3578999999999999999986554 223211 11111 222222211 01000 0112356666889
Q ss_pred cEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCc
Q 001405 873 SLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHY 914 (1083)
Q Consensus 873 sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~ 914 (1083)
+||+|||++.--.......+...+++.-.. .+..+||+|..
T Consensus 165 dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~-~~~ptiitSNl 205 (248)
T PRK12377 165 DLLVLDEIGIQRETKNEQVVLNQIIDRRTA-SMRSVGMLTNL 205 (248)
T ss_pred CEEEEcCCCCCCCCHHHHHHHHHHHHHHHh-cCCCEEEEcCC
Confidence 999999997765555566777788877554 45667777764
No 496
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.81 E-value=0.0023 Score=73.92 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred ccccccCCceEEEEEcCCCCCchhHHHHHHHHH
Q 001405 784 DTNLHAEREYCQIITGPNMGGKSCYIRQVALIG 816 (1083)
Q Consensus 784 di~l~~~~g~i~~ItGpNgsGKSTlLr~i~~~~ 816 (1083)
|+.+.+.+|+..+|+||.|+|||||++.|+...
T Consensus 160 d~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 160 DLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred eeEEEeCCCCEEEEECCCCCChhHHHHHHHHhh
Confidence 899999999999999999999999999987543
No 497
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.79 E-value=0.003 Score=70.96 Aligned_cols=85 Identities=15% Similarity=0.268 Sum_probs=49.0
Q ss_pred CCceEEEEEcCCCCCchhHHHHHHHHHHHh---hccccccccccccchHHHHHh---hCCcchhHHhchhhhHHHHHHHH
Q 001405 790 EREYCQIITGPNMGGKSCYIRQVALIGIMA---QVGSFVPASSAELHVLDGIYT---RMGASDSIQQGRSTFLEELNEAS 863 (1083)
Q Consensus 790 ~~g~i~~ItGpNgsGKSTlLr~i~~~~~la---q~g~~vp~~~~~~~~~~~i~~---~~~~~d~~~~~~stf~~e~~~~~ 863 (1083)
+.+.+++|+||+|+||||++..++...... .--+++..+..+.+..+.+.. .++..-..... -..+.
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~-------~~~l~ 264 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARD-------PKELR 264 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCC-------HHHHH
Confidence 357899999999999999999887554332 222455666544444433321 12221111111 11233
Q ss_pred HHHHhCCCCcEEEEeCCC
Q 001405 864 YILRNCTAQSLVIVDELG 881 (1083)
Q Consensus 864 ~il~~~~~~sLvllDEp~ 881 (1083)
..+..+.+.++||+|.||
T Consensus 265 ~~l~~~~~~d~vliDt~G 282 (282)
T TIGR03499 265 KALDRLRDKDLILIDTAG 282 (282)
T ss_pred HHHHHccCCCEEEEeCCC
Confidence 444455668999999886
No 498
>PRK03918 chromosome segregation protein; Provisional
Probab=96.78 E-value=0.0027 Score=82.95 Aligned_cols=51 Identities=20% Similarity=0.176 Sum_probs=40.4
Q ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeCchHHHHHh
Q 001405 869 CTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIK 921 (1083)
Q Consensus 869 ~~~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~ 921 (1083)
+.+|+++||||||+|+|+.....+...+ ..+.. .+.++|++||+.++...+
T Consensus 810 ~~~~~~lilDEp~~~lD~~~~~~l~~~l-~~~~~-~~~~iiiith~~~~~~~~ 860 (880)
T PRK03918 810 AGNIPLLILDEPTPFLDEERRRKLVDIM-ERYLR-KIPQVIIVSHDEELKDAA 860 (880)
T ss_pred cCCCCeEEEeCCCcccCHHHHHHHHHHH-HHHHh-cCCEEEEEECCHHHHHhC
Confidence 4789999999999999998888776544 44444 467899999999876543
No 499
>PF13173 AAA_14: AAA domain
Probab=96.76 E-value=0.0058 Score=60.12 Aligned_cols=99 Identities=17% Similarity=0.262 Sum_probs=52.7
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHhhccccccccccccchHHHHHhhCCcchhHHhchhhhHHHHHHHHHHHHh-CC
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRN-CT 870 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~laq~g~~vp~~~~~~~~~~~i~~~~~~~d~~~~~~stf~~e~~~~~~il~~-~~ 870 (1083)
+++++|+||-|+||||++++++.-.....-..|+..+.. -.......+ +. ..+... ..
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~-------~~~~~~~~~--------~~------~~~~~~~~~ 60 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDP-------RDRRLADPD--------LL------EYFLELIKP 60 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCH-------HHHHHhhhh--------hH------HHHHHhhcc
Confidence 568999999999999999998643221111122221111 000000000 00 111111 13
Q ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeCchHHH
Q 001405 871 AQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHK-KCMVLFVTHYPKIA 918 (1083)
Q Consensus 871 ~~sLvllDEp~~Gtd~~~~~~i~~~il~~l~~~~-~~~vl~~TH~~~l~ 918 (1083)
...+|++||...-=+. ...++.+.+.. ++.+++++......
T Consensus 61 ~~~~i~iDEiq~~~~~-------~~~lk~l~d~~~~~~ii~tgS~~~~l 102 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDW-------EDALKFLVDNGPNIKIILTGSSSSLL 102 (128)
T ss_pred CCcEEEEehhhhhccH-------HHHHHHHHHhccCceEEEEccchHHH
Confidence 6799999998765432 33344444422 57889988876544
No 500
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.76 E-value=0.022 Score=66.59 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=50.6
Q ss_pred ceEEEEEcCCCCCchhHHHHHHHHHHHhh--cc---ccccccccccchHHHH---HhhCCcchhHHhchhhhHHHHHHHH
Q 001405 792 EYCQIITGPNMGGKSCYIRQVALIGIMAQ--VG---SFVPASSAELHVLDGI---YTRMGASDSIQQGRSTFLEELNEAS 863 (1083)
Q Consensus 792 g~i~~ItGpNgsGKSTlLr~i~~~~~laq--~g---~~vp~~~~~~~~~~~i---~~~~~~~d~~~~~~stf~~e~~~~~ 863 (1083)
+.+++++||||+||||.+.-++....+.. -| .++.++..+.+-.+.+ -..+|..-.. ...+ ..+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~---~~~~----~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKA---IESF----KDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEe---eCcH----HHHH
Confidence 56899999999999999998885544321 12 2344444444433332 2234432111 1111 2233
Q ss_pred HHHHhCCCCcEEEEeCCCCCC
Q 001405 864 YILRNCTAQSLVIVDELGRGT 884 (1083)
Q Consensus 864 ~il~~~~~~sLvllDEp~~Gt 884 (1083)
..+....+.++||+|++|+.-
T Consensus 247 ~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhCCCCEEEEcCCCCCc
Confidence 344445778999999999876
Done!