Query 001405
Match_columns 1083
No_of_seqs 361 out of 3499
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 16:09:37 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001405.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_708-712//hhsearch_pdb/001405hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thx_B DNA mismatch repair pro 1.0 1 1 1312.2 79.0 858 85-1003 9-887 (918)
2 2o8b_B DNA mismatch repair pro 1.0 1 1 1272.0 74.3 879 54-1000 31-992 (1022)
3 1wb9_A DNA mismatch repair pro 1.0 1 1 1206.6 74.9 784 87-995 8-798 (800)
4 1ewq_A DNA mismatch repair pro 1.0 1 1 1157.3 64.8 749 86-995 10-764 (765)
5 3thx_A DNA mismatch repair pro 1.0 1 1 1118.4 70.1 818 85-997 12-855 (934)
6 3rlf_A Maltose/maltodextrin im 1.0 1 1 144.4 10.2 145 774-919 11-198 (381)
7 3fvq_A Fe(3+) IONS import ATP- 1.0 1 1 144.0 12.2 145 774-919 12-203 (359)
8 4g1u_C Hemin import ATP-bindin 1.0 1 1 143.9 9.8 143 776-919 21-212 (266)
9 1z47_A CYSA, putative ABC-tran 1.0 1 1 142.2 11.3 145 774-919 22-210 (355)
10 2it1_A 362AA long hypothetical 1.0 1 1 141.4 10.1 144 775-919 12-198 (362)
No 1
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=1.00 E-value=1 Score=1312.17 Aligned_cols=858 Identities=40% Similarity=0.675 Sum_probs=712.4
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECHHHHHHHHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCEE
Q ss_conf 99999979999999984299909999848679982187999998837511379984030226668689999999828779
Q 001405 85 HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKV 164 (1083)
Q Consensus 85 ~~~~~TP~~~Qy~~lK~~~~D~illfr~G~FYElf~eDA~~~a~~L~i~~~~~~~~~~aGfP~~~l~~yl~rLV~~GykV 164 (1083)
..+++||||||||+||++|||+||||||||||||||+||++||++|||+++.++++||||||+|+++.|++|||++||||
T Consensus 9 ~~~~~TPmm~Qy~~iK~~~~D~lLffr~GdFYElF~eDA~~as~~L~i~lt~~~~~pmaGvP~ha~~~yl~rLv~~G~kV 88 (918)
T 3thx_B 9 SKSIYTPLELQYIEMKQQHKDAVLCVECGYKYRFFGEDAEIAARELNIYCHLDHNFMTASIPTHRLFVHVRRLVAKGYKV 88 (918)
T ss_dssp -CTTSCHHHHHHHHHHTTTTTSEEEEECSSEEEEEHHHHHHHHHHHTCCCEEETTEEEEEEEGGGHHHHHHHHHHHTCCE
T ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEECCCCEEEEECCHHHHHHHHHHHHHCCCCE
T ss_conf 88899989999999998789959999848776650756999999729064057971277233767899999999769958
Q ss_pred EEEECCCCHHHHCCCCCCCCCEEECCEEECCCCEEECCCCC-----CCC---CC-CCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 99922565677609999888701121100133024104456-----999---89-8899882699999406897543467
Q 001405 165 GVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDV-----GGG---ED-GCGGESNYLVCVVDDDGNVGKIRNG 235 (1083)
Q Consensus 165 aiveQ~Et~~~k~~~~~~~~~~~R~v~~i~TpgT~~~~~~l-----~~~---~~-~~~~~~~yLlaI~~~~~~~~~~~~~ 235 (1083)
|||||+|+|+.|+.+.+|.|+|+|+|||||||||++|+++. ++. ++ ..+..+|||+||++.... .
T Consensus 89 ai~eQ~E~p~~k~~~~~k~~~v~R~v~rvvTpGT~~d~~~~~~~~~~~~~~~~~~l~~~~~nyL~ai~~~~~~------~ 162 (918)
T 3thx_B 89 GVVKQTETAALKAIGDNRSSLFSRKLTALYTKSTLIGEDVNPLIKLDDAVNVDEIMTDTSTSYLLCISENKEN------V 162 (918)
T ss_dssp EEEEECSCHHHHTTSTTCSSCCCEEEEEEECTTCCCSTTTCCEEEC--CEEECCCSCTTSCCCEEEEEEEC---------
T ss_pred EEEECCCCHHHHHCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCC------C
T ss_conf 9995257766651124567855666889977873116310121123332221124678887679999964555------5
Q ss_pred CCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHC---CCCCCCEEEEC
Q ss_conf 668986626999999845671899991371117889999862586289938999748999999832---99986124205
Q 001405 236 VFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYA---GPASNVRVECA 312 (1083)
Q Consensus 236 ~~~~~~~~~iGia~vD~sTGe~~~~ef~D~~~~~~L~t~L~~~~P~EIii~~~ls~~~~k~l~~~~---~~~~~~~i~~~ 312 (1083)
...++....+|+||+|+|||+|.+++|.|+..++.|.+.|.+++|+|||+++.++..+.+++..+. .....+.+++.
T Consensus 163 ~~~~~~~~~~Gla~~D~sTGef~~~~f~d~~~~~~L~~~L~~~~P~Eil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (918)
T 3thx_B 163 RDKKKGNIFIGIVGVQPATGEVVFDSFQDSASRSELETRMSSLQPVELLLPSALSEQTEALIHRATSVSVQDDRIRVERM 242 (918)
T ss_dssp ------CEEEEEEEEETTTTEEEEEEEEECTTCHHHHHHHHHHCCSEEEEESSCCHHHHHHHHHHHHSSCSSSCCEEEEE
T ss_pred CCCCCCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEC
T ss_conf 45455686599999986677389999448405999999998569869995687555789999863000014663157854
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCC
Q ss_conf 76555620069999998530167866767666877654578740011015970899999999999999835301210278
Q 001405 313 SRDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGA 392 (1083)
Q Consensus 313 ~~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Al~~ll~YL~~~~~~~~~~~~~ 392 (1083)
+.++|+...+...+..+|.....+.. ....+..+.+++..+++|+|+++.||++++....+....
T Consensus 243 ~~~~f~~~~a~~~l~~~f~~~~l~~~---------------g~~~~~~~~~~~~~~~~A~gall~Yl~~~~~~~~l~~~~ 307 (918)
T 3thx_B 243 DNIYFEYSHAFQAVTEFYAKDTVDIK---------------GSQIISGIVNLEKPVICSLAAIIKYLKEFNLEKMLSKPE 307 (918)
T ss_dssp CGGGTSHHHHHHHHHHHCC-----------------------------CCCCCHHHHHHHHHHHHHHHHTTCGGGGSCGG
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCC---------------CCHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 51115756799999998385642112---------------403454330143899999999999999964112323443
Q ss_pred CCEEC-CCCCEEEECHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 82221-89980782885675010053058987544076631025897247999988417289959999999999999971
Q 001405 393 SFRSL-SGSMEMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAES 471 (1083)
Q Consensus 393 ~~~~~-~~~~~M~LD~~Tl~nLEIl~n~~dg~~~gSLl~lLn~T~T~~G~RLLR~WLl~PL~d~~~I~~RlDaVe~L~~~ 471 (1083)
++..| ..+.+|.||++|++||||++|.++|+.+|||||+||||+|+||+||||+||++||+|++.|++|||+|++|..+
T Consensus 308 ~~~~~~~~~~~m~LD~~T~rnLEL~~~~~~~~~~gSLl~~Ld~t~T~mG~RlLr~Wl~~PL~d~~~I~~R~daVe~l~~~ 387 (918)
T 3thx_B 308 NFKQLSSKMEFMTINGTTLRNLEILQNQTDMKTKGSLLWVLDHTKTSFGRRKLKKWVTQPLLKLREINARLDAVSEVLHS 387 (918)
T ss_dssp GEEESCCTTTBCEECHHHHHHTTSSSCTTTCSSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSC
T ss_pred CCEEECCCCCEEEECHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 32153277887998789997437763689998887699998427796899999998758278999999999999999847
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 17755555556667788742333012899999999972899887999988970678925799999999999999999751
Q 001405 472 MGSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHI 551 (1083)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Lk~i~DlERll~ri~~~~a~~~d~~~l~~~l~~~~~~l~~l~~ 551 (1083)
. . ..+..++..|++++|+||+++|+..++++|+|++.+.+++......++.+.
T Consensus 388 ~-----------------------~---~~~~~l~~~L~~i~DleRll~ri~~~~~~~~dl~~l~~~l~~l~~~l~~~l- 440 (918)
T 3thx_B 388 E-----------------------S---SVFGQIENHLRKLPDIERGLCSIYHKKCSTQEFFLIVKTLYHLKSEFQAII- 440 (918)
T ss_dssp C-----------------------C---THHHHHHHTTTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred C-----------------------C---HHHHHHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 9-----------------------5---789999998726865778888760376888999999999999999999998-
Q ss_pred CCCCHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 12001100000000899999998339933565699999999777643069544410389-99999999999999999999
Q 001405 552 DGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISN-GQFSEVARARKAVQSAKEEL 630 (1083)
Q Consensus 552 ~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~~~~i~~-g~~~eLd~lr~~i~~i~~~l 630 (1083)
. .. .....+++|..+...+. ........+.+.|+.++...++... .+.+ ..+++++.+++.+..+.+++
T Consensus 441 ~-----~~-~~~~~~~lL~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 510 (918)
T 3thx_B 441 P-----AV-NSHIQSDLLRTVILEIP--ELLSPVEHYLKILNEQAAKVGDKTE--LFKDLSDFPLIKKRKDEIQGVIDEI 510 (918)
T ss_dssp H-----HH-HHTCCCHHHHHHHTHHH--HHTGGGHHHHTTSCHHHHHHTCSTT--SCSCGGGCHHHHHHHHHHHHHHHHH
T ss_pred H-----HH-HHHCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCC--CCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 8-----76-52025789999997555--6678999999998776644277420--0024322777999999999999999
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCC--CCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999998199862015752706999725677--78983799600378599839578999999999999999999998
Q 001405 631 DSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--KVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAA 708 (1083)
Q Consensus 631 ~~ll~~~~~~l~~~~l~~~~~~~~~~~iev~~~~--~~p~~~i~~s~~~~~~r~~t~ei~~l~~~l~~~~~~~~~~~~~~ 708 (1083)
++.+.++++.++...+.|+.+.|.+|+|+|+... ++|+.|+.++++++++||+||++.+++.++..+++++...+.+.
T Consensus 511 ~~~l~~~~~~i~~~~~~~~~~~g~~y~iev~~~~~~~vp~~~~~~~~~~~~~rf~tpel~~~~~~~~~~~e~~~~~e~~~ 590 (918)
T 3thx_B 511 RMHLQEIRKILKNPSAQYVTVSGQEFMIEIKNSAVSCIPTDWVKVGSTKAVSRFHSPFIVENYRHLNQLREQLVLDCSAE 590 (918)
T ss_dssp HHHHHHHHHHHTCTTCCCEEETTEEEEEEEETTSGGGSCSSCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCEEEEECCCEEEEEECHHHHHHCCCEEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999874756643685128789999737877019984899983477259977899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCEEEECC--CCCCCCCCCC
Q ss_conf 99999987446999999999998999999999986239986643406999632566037656044013--6610125665
Q 001405 709 WDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTIL--LDNFVPNDTN 786 (1083)
Q Consensus 709 ~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~--~~~~v~ndi~ 786 (1083)
+.+++..+.+++..|..+++.+++|||++|+|.+|...+||+|.++++. .+.++++|||+++... ++.+||||++
T Consensus 591 ~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~---~i~i~~~rHP~le~~~~~~~~~V~ndvs 667 (918)
T 3thx_B 591 WLDFLEKFSEHYHSLCKAVHHLATVDCIFSLAKVAKQGDYCRPTVQEER---KIVIKNGRHPVIDVLLGEQDQYVPNNTD 667 (918)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHTSSSCBCCEEESSC---EEEEEEECCHHHHHHTCSCSSSCCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC---CEEEEECCCHHHHHHHCCCCCEECCCCC
T ss_conf 9999999998899999999999999999999999734897477546888---4799725652122231368956615662
Q ss_pred CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 56688628999838999813699777999998540553346531020699998608950169720202589999999999
Q 001405 787 LHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYIL 866 (1083)
Q Consensus 787 l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~Stf~~em~~~~~il 866 (1083)
|+.+.|++++||||||||||||||+++++++|+|.|+++|+..+.+++++++|+++|..|++..+.|+|+++|++++.|+
T Consensus 668 l~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l~~~~stfs~em~~~~~il 747 (918)
T 3thx_B 668 LSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNIYKGRSTFMEELTDTAEII 747 (918)
T ss_dssp ECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC----------CCHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 34788708999899987658999999887888624763452111225999999867858899986877658999999999
Q ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEEECCCCCC--
Q ss_conf 958999299982999999979999999999999982799199998076579997523069721138999852255799--
Q 001405 867 RNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGP-- 944 (1083)
Q Consensus 867 ~~~~~~sLiilDE~~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~-- 944 (1083)
+.+++|+|+|||||++|||+.++.++++++++++.+..++++||+||+++++.+.+.+++.|.|+||.+.........
T Consensus 748 ~~a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~~~~~~~~~~~~~~ 827 (918)
T 3thx_B 748 RKATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHMGFLVSEDESKLDP 827 (918)
T ss_dssp HHCCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEEEEECC--------
T ss_pred HHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCC
T ss_conf 86669978999689889998999999999999999824986999947689999986251446789999997156433344
Q ss_pred -CCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -89999994456576548999883899999998999899999999999999988655522
Q 001405 945 -MDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSRVQN 1003 (1083)
Q Consensus 945 -~~~~~~~~~~~~y~l~~G~~~~Sygi~vA~~aGip~~vi~~A~~i~~~l~~~~~~~~~~ 1003 (1083)
......+.++|+|++.+|++++||||+||++||+|++||++|++++.+|++..+.+.++
T Consensus 828 ~~~~~~~~~l~flykl~~G~~~~S~gi~vA~~aGlp~~vi~rA~~~~~~LE~~~~~~~k~ 887 (918)
T 3thx_B 828 GAAEQVPDFVTFLYQITRGIAARSYGLNVAKLADVPGEILKKAAHKSKELEGLINTKRKR 887 (918)
T ss_dssp ---------CCEEEEEEESCCCTTTTHHHHTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 434578883458635622899874899999982969999999999999999999999999
No 2
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=1.00 E-value=1 Score=1272.05 Aligned_cols=879 Identities=27% Similarity=0.423 Sum_probs=686.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCC---C-CCCC-CCC--CCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECHHHHHH
Q ss_conf 46888999999998999989999---9-9999-768--999999799999999842999099998486799821879999
Q 001405 54 VSSLFPPKTPKKPKLSPHTLNPI---P-TPSS-QTT--HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMA 126 (1083)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~---~-~~~t-~~~--~~~~~TP~~~Qy~~lK~~~~D~illfr~G~FYElf~eDA~~~ 126 (1083)
...||.| . +++|+..++| . ||+| ||| .+.++||||||||+||++|||+||||||||||||||+||+++
T Consensus 31 ~~~~l~~--~---~~rD~~~r~~~~p~ydp~tl~ip~~~~~~~TPmm~Qy~~iK~~~~d~llffr~GdFYElf~~DA~~~ 105 (1022)
T 2o8b_B 31 TLEWLKE--E---KRRDEHRRRPDHPDFDASTLYVPEDFLNSCTPGMRKWWQIKSQNFDLVICYKVGKFYELYHMDALIG 105 (1022)
T ss_dssp GCGGGST--T---TCCCTTCCCTTSTTCCTTCCCCCHHHHTTSCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHH
T ss_pred CCHHCCC--C---CCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHH
T ss_conf 6400184--5---4410028999999999875537821100189899999997875899899997797799844159999
Q ss_pred HHHHCCCCCCCCCCEECCCCCCCHHHHHHHHHHCCCEEEEEECCCCHHHH-----CCC-C-CCCCCEEECCEEECCCCEE
Q ss_conf 98837511379984030226668689999999828779999225656776-----099-9-9888701121100133024
Q 001405 127 AKVLGIYAHLDHNFMTASIPTFRLNVHVRRLVNAGFKVGVVKQTETAAIK-----AHG-P-GKAGPFGRGLSALYTKATL 199 (1083)
Q Consensus 127 a~~L~i~~~~~~~~~~aGfP~~~l~~yl~rLV~~GykVaiveQ~Et~~~k-----~~~-~-~~~~~~~R~v~~i~TpgT~ 199 (1083)
|++|||++++ +++||||||+|+++.|+.+||++|||||||||+|+|+.+ ..+ + ++.|+|+|+|||||||||+
T Consensus 106 a~~L~i~lt~-~~~pmaGvP~ha~~~yl~~Lv~~GykVai~eQ~e~p~~~~~r~~~~~~~~k~~~~v~Rev~rvvTpGT~ 184 (1022)
T 2o8b_B 106 VSELGLVFMK-GNWAHSGFPEIAFGRYSDSLVQKGYKVARVEQTETPEMMEARCRKMAHISKYDRVVRREICRIITKGTQ 184 (1022)
T ss_dssp HHHHCCCCCS-SSSCEEEEEGGGHHHHHHHHHHTTCCEEEEEECSCHHHHHHHHHTCSSCCSGGGSCCEEEEEEECTTSC
T ss_pred HHHCCEEEEC-CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHCCCCCCCCCCEEEEEEEEECCCEE
T ss_conf 9850948722-887778985607999999999879969999488980354454432035555688536517999889866
Q ss_pred ECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCC
Q ss_conf 10445699989889988269999940689754346766898662699999984567189999137111788999986258
Q 001405 200 EAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLS 279 (1083)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~yLlaI~~~~~~~~~~~~~~~~~~~~~~iGia~vD~sTGe~~~~ef~D~~~~~~L~t~L~~~~ 279 (1083)
+|+++.+.. ....+|||+||++...+ .. +....+|+||+|+|||+|.+++|.|+..+++|.+.|.+++
T Consensus 185 ~d~~~~~~l---~~~~~n~l~ai~~~~~~----~~-----~~~~~~Gla~~D~sTGe~~~~e~~d~~~~~~L~~~L~~~~ 252 (1022)
T 2o8b_B 185 TYSVLEGDP---SENYSKYLLSLKEKEED----SS-----GHTRAYGVCFVDTSLGKFFIGQFSDDRHCSRFRTLVAHYP 252 (1022)
T ss_dssp CCCTTSCCC---SCSSCCEEEEEEEEECS----CC------CCEEEEEEEECTTTCCEEEEEEEECSSCHHHHHHHHHSC
T ss_pred ECCCCCCCC---CCCCCCEEEEEEECCCC----CC-----CCCCEEEEEEEECCCCEEEEEEECCCHHHHHHHHHHHHCC
T ss_conf 654323444---67778689999982356----66-----7776799999998778799999428417999999998429
Q ss_pred CCEEEECCC-CCHHHHHHHHHHCCCCCCCEEEE--CCCCCCCCCHHHHHHH--HHHHCCCCCCCCCCCCCCCCCC---CC
Q ss_conf 628993899-97489999998329998612420--5765556200699999--9853016786676766687765---45
Q 001405 280 PAELLLGQP-LSKQTEKMLLAYAGPASNVRVEC--ASRDCFIGGGALAEVM--SLYENMGEDTLSNNEDQNMDVP---EQ 351 (1083)
Q Consensus 280 P~EIii~~~-ls~~~~k~l~~~~~~~~~~~i~~--~~~~~f~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~---~~ 351 (1083)
|+|||++.. .+..+.+++.... ....... ....+|+...+...+. .+|...... .....+.... ..
T Consensus 253 P~Eil~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~---~~~~~~~~~l~~~~~ 326 (1022)
T 2o8b_B 253 PVQVLFEKGNLSKETKTILKSSL---SCSLQEGLIPGSQFWDASKTLRTLLEEEYFREKLSD---GIGVMLPQVLKGMTS 326 (1022)
T ss_dssp EEEEEEETTTCCHHHHHHHTTTT---TTSEEEEECBTTTBCCHHHHHHHHHHTTTTSSSSCC---CC-CCCCHHHHHTEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHH---HHHHHHHCCCCHHHCCHHHHHHHHHHHHHCCCCCCC---CCCHHHHHHHHHHHC
T ss_conf 84899557766667889887531---144453036630110056677654355430442221---110235899987410
Q ss_pred CCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEE------------------CCCCCEEEECHHHHHHC
Q ss_conf 787400110159708999999999999998353012102788222------------------18998078288567501
Q 001405 352 GNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRS------------------LSGSMEMTLSANTLQQL 413 (1083)
Q Consensus 352 ~~~~~~~~~~~~~~~~a~~Al~~ll~YL~~~~~~~~~~~~~~~~~------------------~~~~~~M~LD~~Tl~nL 413 (1083)
.....++.. .....++++|+|+++.||+.++.+..+....++.. +..+.+|.||++|++||
T Consensus 327 ~~~~~~~~~-~~~~~~a~~A~gall~Yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~LD~~T~~nL 405 (1022)
T 2o8b_B 327 ESDSIGLTP-GEKSELALSALGGCVFYLKKCLIDQELLSMANFEEYIPLDSDTVSTTRSGAIFTKAYQRMVLDAVTLNNL 405 (1022)
T ss_dssp CCSTTCSEE-CGGGHHHHHHHHHHHHHHHHHTCHHHHHTTCCEEECCCGGGGTCC---------CCCCBCBCCHHHHHHT
T ss_pred CHHHCCCCC-CCCCHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECHHHHHHH
T ss_conf 122116654-3253899999999999999967212221135544205642012222222211147788598388999862
Q ss_pred CCEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 00530589875440766310258972479999884172899599999999999999711775555555666778874233
Q 001405 414 EVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESVGQHDEKNSDVTI 493 (1083)
Q Consensus 414 EIl~n~~dg~~~gSLl~lLn~T~T~~G~RLLR~WLl~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (1083)
||++|.++|+.+|||||+||||+|+||+||||+||++||+|++.|++|||+|++|+++.
T Consensus 406 El~~~~~~g~~~gSLl~~Ld~t~T~mG~RLLr~WL~~PL~d~~~I~~RldaVe~l~~~~--------------------- 464 (1022)
T 2o8b_B 406 EIFLNGTNGSTEGTLLERVDTCHTPFGKRLLKQWLCAPLCNHYAINDRLDAIEDLMVVP--------------------- 464 (1022)
T ss_dssp TCSSCCSSSSCCCSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHTCH---------------------
T ss_pred CCCCCCCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCH---------------------
T ss_conf 47745789998880898717578956489999998574679999999999999998395---------------------
Q ss_pred CHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-CCC-------------------CH---HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3012899999999972899887999988970-678-------------------92---579999999999999999975
Q 001405 494 VEPQFYYILSSVLTSLGRSPDIQRGITRIFH-RTA-------------------TP---SEFIAVMQAILYAGKQLQQLH 550 (1083)
Q Consensus 494 ~~~~~~~~l~~l~~~Lk~i~DlERll~ri~~-~~a-------------------~~---~d~~~l~~~l~~~~~~l~~l~ 550 (1083)
.++..++..|+++||+||+++|++. +++ ++ .++..+++++.. ...+...
T Consensus 465 ------~~~~~l~~~L~~i~DlERll~Ri~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~l~~~l~~l~~-~~~i~~~- 536 (1022)
T 2o8b_B 465 ------DKISEVVELLKKLPDLERLLSKIHNVGSPLKSQNHPDSRAIMYEETTYSKKKIIDFLSALEGFKV-MCKIIGI- 536 (1022)
T ss_dssp ------HHHHHHHHHHTTCCCHHHHHHHHHHHHCHHHHHHCGGGGCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-
T ss_pred ------HHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHH-
T ss_conf ------89999999970486689999999742775433345202333333311154449999999999999-9999999-
Q ss_pred HCCCCHHHHHHCHHHHHHHHHHHHHCC-----C-CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 112001100000000899999998339-----9-3356569999999977764306954441038999999999999999
Q 001405 551 IDGEYREKVTSKTLHSALLKRLILTAS-----S-PAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQ 624 (1083)
Q Consensus 551 ~~~~~~~~~~~~~~~s~lL~~l~~~~~-----~-~~~~~~~~~ll~~i~~~~~~~~~~~~~~~i~~g~~~eLd~lr~~i~ 624 (1083)
+.. ......+.+|..+..... . ..+.+....+...|+.+....+ ..+.+++|++++||+++..+.
T Consensus 537 l~~------~~~~~~s~lL~~~~~~~~~~~~~~~~~l~~~~~~~~~~id~~~~~~~---g~i~~~~g~~~~ld~~r~~~~ 607 (1022)
T 2o8b_B 537 MEE------VADGFKSKILKQVISLQTKNPEGRFPDLTVELNRWDTAFDHEKARKT---GLITPKAGFDSDYDQALADIR 607 (1022)
T ss_dssp HHH------HHTTCCCHHHHHHTSBTTTSSSSCBCCCHHHHHHHHTTSCHHHHHHS---CCCCCTTCC-CHHHHHHHHHH
T ss_pred HHH------HHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCHHHHCC---CCEEECCCCCHHHHHHHHHHH
T ss_conf 986------43025769999999743024444507799999999987280434118---967447999988999999999
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCEEEEECCCEEEEECCCCC--C-CCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999999998199862015752706999725677--7-898379960037859983957899999999999999
Q 001405 625 SAKEELDSLINMCRKQLGMRNLEFMSVSGITHLIELPANF--K-VPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEEL 701 (1083)
Q Consensus 625 ~i~~~l~~ll~~~~~~l~~~~l~~~~~~~~~~~iev~~~~--~-~p~~~i~~s~~~~~~r~~t~ei~~l~~~l~~~~~~~ 701 (1083)
+.++++.+++.++++.+++++++|+++.+.+|+|+|+... + +|+.|+.++++++..||+++++.++..++..+++++
T Consensus 608 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~y~i~v~~~~~~~~vp~~~~~~~t~~~~~rf~t~el~~~~~~l~~~~~~~ 687 (1022)
T 2o8b_B 608 ENEQSLLEYLEKQRNRIGCRTIVYWGIGRNRYQLEIPENFTTRNLPEEYELKSTKKGCKRYWTKTIEKKLANLINAEERR 687 (1022)
T ss_dssp HHHHHHHHHHTSSGGGSSCSCCEEECCGGGCCEEEECTTTTSSCCCC-CEEEEETTEEEECCTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCEEEEEECCCEEEEEEEHHHHCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999984998635787427669999744552155897348865136850796157889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCCCCCEEECCC-CCCEEEEECCCCCEEEECC-C
Q ss_conf 9999998999999874469999999999989999999999862--3998664340699-9632566037656044013-6
Q 001405 702 TIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSR--NKNFVRPVFVDDH-EPVQIHICSGRHPVLDTIL-L 777 (1083)
Q Consensus 702 ~~~~~~~~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~a~~a~--~~~~~~P~~~~~~-~~~~i~i~~~rhP~l~~~~-~ 777 (1083)
..++.+++.++...+.+++..|..+.++++.|||++|+|.+|. ..+||+|.+++.. +...+.+++||||+++..+ +
T Consensus 688 ~~~~~~l~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~~P~~~~~~~~~~~l~i~~~rHP~l~~~~~~ 767 (1022)
T 2o8b_B 688 DVSLKDCMRRLFYNFDKNYKDWQSAVECIAVLDVLLCLANYSRGGDGPMCRPVILLPEDTPPFLELKGSRHPCITKTFFG 767 (1022)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHTTCSSSCEECCEECCTTTSCCCEEEEEECCCC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEECC
T ss_conf 99999999999999999999999999999999999957999864367851775456779986399992625579999558
Q ss_pred CCCCCCCCCCCCCC-------CEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHH
Q ss_conf 61012566556688-------62899983899981369977799999854055334653102069999860895016972
Q 001405 778 DNFVPNDTNLHAER-------EYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQ 850 (1083)
Q Consensus 778 ~~~v~ndi~l~~~~-------~~i~~itGpN~~GKSTlLr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~ 850 (1083)
+.+|+||++|+... |++++||||||||||||||++|++.+|+|+|+|||+..+.++++|+|++++|..|++..
T Consensus 768 ~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~iGl~~~~aqiG~~Vpq~~~~l~v~d~I~~rig~~d~~~~ 847 (1022)
T 2o8b_B 768 DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQAGLLAVMAQMGCYVPAEVCRLTPIDRVFTRLGASDRIMS 847 (1022)
T ss_dssp CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCEESSEEEECCCSBEEEECC-------
T ss_pred CCEEEEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHEEEEECCCCCCCCHHHHHHHHCCCHHHHHH
T ss_conf 95575445533554445577884899988999986899999988999866268852676779799999997697788861
Q ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCE
Q ss_conf 02025899999999999589992999829999999799999999999999827991999980765799975230697211
Q 001405 851 GRSTFLEELNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGT 930 (1083)
Q Consensus 851 ~~Stf~~em~~~~~il~~~~~~sLiilDE~~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~ 930 (1083)
+.|+|+++|.+++.++..+++++||||||||+|||+.+|.++++++++++.+..++++||+||+++++........ |.+
T Consensus 848 ~~stf~~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~-v~~ 926 (1022)
T 2o8b_B 848 GESTFFVELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVA-VRL 926 (1022)
T ss_dssp --CHHHHHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSS-EEE
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHCCCCE-EEC
T ss_conf 5433289999999999748899689997998889867899999999999986479989999698999998578543-152
Q ss_pred EEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3899985225579989999994456576548999883899999998999899999999999999988655
Q 001405 931 YHVSYLTSHKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEVSSR 1000 (1083)
Q Consensus 931 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~l~~G~~~~Sygi~vA~~aGip~~vi~~A~~i~~~l~~~~~~~ 1000 (1083)
.||.+........ .+ .+.++|+|++.+|.+++|||++||+++|+|.+||++|++++.+++.....+
T Consensus 927 g~~~~~~~~~~~~-~~---~~~l~~ly~l~~G~~~~Sygi~vA~l~Glp~~vi~rA~~~~~~le~~~~~~ 992 (1022)
T 2o8b_B 927 GHMACMVENECED-PS---QETITFLYKFIKGACPKSYGFNAARLANLPEEVIQKGHRKAREFEKMNQSL 992 (1022)
T ss_dssp EEEEEC-----------------CEEEEEESSCCCCCHHHHHHHHTTCCHHHHHHHHHHHHHTTSSTTST
T ss_pred CEEEEEEECCCCC-CC---CCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7699997057233-78---773588853247999987999999980979999999999999999788887
No 3
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=1.00 E-value=1 Score=1206.56 Aligned_cols=784 Identities=28% Similarity=0.399 Sum_probs=678.8
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECHHHHHHHHHHCCCCCCC-----CCCEECCCCCCCHHHHHHHHHHCC
Q ss_conf 999979999999984299909999848679982187999998837511379-----984030226668689999999828
Q 001405 87 KKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLD-----HNFMTASIPTFRLNVHVRRLVNAG 161 (1083)
Q Consensus 87 ~~~TP~~~Qy~~lK~~~~D~illfr~G~FYElf~eDA~~~a~~L~i~~~~~-----~~~~~aGfP~~~l~~yl~rLV~~G 161 (1083)
.++||||||||++|++|||+||||||||||||||+||+++|++|+|+++++ .++||||||+|+++.|+++||++|
T Consensus 8 ~~~tp~~~qy~~ik~~~~d~~lffr~GdFYE~f~~DA~~~a~~l~i~lt~r~~~~~~~~pm~GvP~~~~~~yl~~Lv~~G 87 (800)
T 1wb9_A 8 DAHTPMMQQYLRLKAQHPEILLFYRMGDFYTLFYDDAKRASQLLDISLTKRGASAGEPIPMAGIPYHAVENYLAKLVNQG 87 (800)
T ss_dssp GGSCHHHHHHHHHHHHSTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEECCSSSCCEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHCCCEEEEEECCCEEEEEHHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 68997999999978758998999976977998266699999971918851356788867716887899999999999779
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCEEECCEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 77999922565677609999888701121100133024104456999898899882699999406897543467668986
Q 001405 162 FKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGF 241 (1083)
Q Consensus 162 ykVaiveQ~Et~~~k~~~~~~~~~~~R~v~~i~TpgT~~~~~~l~~~~~~~~~~~~yLlaI~~~~~~~~~~~~~~~~~~~ 241 (1083)
||||||||+|+|+. .+|+|+|+|++||||||++|+++++ ...+|||+||++...
T Consensus 88 ~kVai~eQ~e~~~~------~k~~v~R~v~~v~TpGT~~~~~~l~------~~~~n~l~ai~~~~~-------------- 141 (800)
T 1wb9_A 88 ESVAICEQIGDPAT------SKGPVERKVVRIVTPGTISDEALLQ------ERQDNLLAAIWQDSK-------------- 141 (800)
T ss_dssp CCEEEEEECSCGGG------CSSSCCEEEEEEECTTTCCCGGGSC------TTSCCCEEEEEECSS--------------
T ss_pred CEEEEEECCCCCCC------CCCCCEEEEEEEECCCCCCCCCCCC------CCCCCEEEEEEECCC--------------
T ss_conf 85999980588311------4785248899986697221444456------777738999998698--------------
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf 62699999984567189999137111788999986258628993899974899999983299986124205765556200
Q 001405 242 DVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGG 321 (1083)
Q Consensus 242 ~~~iGia~vD~sTGe~~~~ef~D~~~~~~L~t~L~~~~P~EIii~~~ls~~~~k~l~~~~~~~~~~~i~~~~~~~f~~~~ 321 (1083)
.+|+||+|+|||+|.+++|.| ++.|.+.|.+++|+|||++...... . + ... ...++..+.++|+...
T Consensus 142 --~~Gla~~D~stg~~~~~~~~d---~~~l~~~l~~~~P~Eil~~~~~~~~--~-l---~~~--~~~~~~~~~~~f~~~~ 208 (800)
T 1wb9_A 142 --GFGYATLDISSGRFRLSEPAD---RETMAAELQRTNPAELLYAEDFAEM--S-L---IEG--RRGLRRRPLWEFEIDT 208 (800)
T ss_dssp --CEEEEEECTTTCCEEEECCCS---HHHHHHHHHHHCCSEEEEETTCCCG--G-G---TTT--CSSEEEECGGGGCHHH
T ss_pred --EEEEEEEECCCCEEEEEEECC---HHHHHHHHHHCCCEEEEECCCCCHH--H-H---HHC--CCCEEECCCCCCCHHH
T ss_conf --899999998777799998168---9999999973598399974887768--8-8---520--5614886610168557
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCC
Q ss_conf 69999998530167866767666877654578740011015970899999999999999835301210278822218998
Q 001405 322 ALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSM 401 (1083)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Al~~ll~YL~~~~~~~~~~~~~~~~~~~~~~ 401 (1083)
+...+..+|.....+ .. ++.+ .+++++|+|+++.||+.++.... ....+++.+..++
T Consensus 209 ~~~~l~~~~~~~~l~------------------~~---~~~~-~~~~~~a~gall~Yl~~~~~~~~-~~~~~~~~~~~~~ 265 (800)
T 1wb9_A 209 ARQQLNLQFGTRDLV------------------GF---GVEN-APRGLCAAGCLLQYAKDTQRTTL-PHIRSITMEREQD 265 (800)
T ss_dssp HHHHHHHHHTCSCSG------------------GG---TCTT-CHHHHHHHHHHHHHHHHHHCSCC-TTCCCCEECCGGG
T ss_pred HHHHHHHHHCCCCHH------------------HC---CCCC-CHHHHHHHHHHHHHHHHHHHHCC-CCCCCCEEECCCC
T ss_conf 999999884834322------------------20---4357-48999999999999999523201-4635437974477
Q ss_pred EEEECHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 07828856750100530589875440766310258972479999884172899599999999999999711775555555
Q 001405 402 EMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESV 481 (1083)
Q Consensus 402 ~M~LD~~Tl~nLEIl~n~~dg~~~gSLl~lLn~T~T~~G~RLLR~WLl~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~ 481 (1083)
+|.||.+|++||||+++.++ +++||||+++|+|+|+||+|+||+||++||+|++.|++|||+|++|.+
T Consensus 266 ~m~ld~~t~~~LEl~~~~~~-~~~gSL~~ll~~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~v~~~~~----------- 333 (800)
T 1wb9_A 266 SIIMDAATRRNLEITQNLAG-GAENTLASVLDCTVTPMGSRMLKRWLHMPVRDTRVLLERQQTIGALQD----------- 333 (800)
T ss_dssp BCEECHHHHHHTTSSSCTTS-CSTTSHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHTGG-----------
T ss_pred EEEECHHHHHHCCCCCCCCC-CCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH-----------
T ss_conf 79866899985468524789-964659998688969799999998725889999999999999999999-----------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 66677887423330128999999999728998879999889706789257999999999999999997511200110000
Q 001405 482 GQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS 561 (1083)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Lk~i~DlERll~ri~~~~a~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~ 561 (1083)
+...++..|++++|+||+++|+..++++++|+..+.+.+..+ ..++....
T Consensus 334 -------------------~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~~-~~l~~~l~---------- 383 (800)
T 1wb9_A 334 -------------------FTAGLQPVLRQVGDLERILARLALRTARPRDLARMRHAFQQL-PELRAQLE---------- 383 (800)
T ss_dssp -------------------GHHHHHHHHHTTCSHHHHHHHHHHTCCCHHHHHHHHHHHTTH-HHHHHHHH----------
T ss_pred -------------------HHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HHHHHHHH----------
T ss_conf -------------------999778875278658999999972998999999999999999-99999987----------
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00008999999983399335656999999997776430695444103899999999999999999999999999999981
Q 001405 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641 (1083)
Q Consensus 562 ~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~~~~i~~g~~~eLd~lr~~i~~i~~~l~~ll~~~~~~l 641 (1083)
...+++|..+...+... .+....+...|+.+.... ..+.+.|++|++++||++|+.+.+.++++.+++.++++.+
T Consensus 384 -~~~~~~L~~l~~~l~~~--~~l~~~i~~~i~~~~~~~--~~~~~~I~~g~~~eLd~lr~~~~~~~~~l~~~~~~~~~~~ 458 (800)
T 1wb9_A 384 -TVDSAPVQALREKMGEF--AELRDLLERAIIDTPPVL--VRDGGVIASGYNEELDEWRALADGATDYLERLEVRERERT 458 (800)
T ss_dssp -SCCCHHHHHHHHHHCCC--HHHHHHHHHHBCSSCCSC--STTCCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HCCCHHHHHHHHHCCCH--HHHHHHHHHHHCCCCHHH--HHCCCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf -36868999999736028--999999999867475445--4138846789788999999999999999999999999983
Q ss_pred CCCCCEEEEECCCEEEEECCCC--CCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986201575270699972567--77898379960037859983957899999999999999999999899999987446
Q 001405 642 GMRNLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGY 719 (1083)
Q Consensus 642 ~~~~l~~~~~~~~~~~iev~~~--~~~p~~~i~~s~~~~~~r~~t~ei~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 719 (1083)
+++.+++.+....+|+|+|+.. .++|..|+.+++.++..||++|++.++++++..+++++...+..++.++...+..+
T Consensus 459 ~~~~l~i~~~~~~gy~i~V~~~~~~~vp~~~i~~~s~~~~~~f~tp~l~~l~~~i~~~~~~~~~~e~~i~~~l~~~~~~~ 538 (800)
T 1wb9_A 459 GLDTLKVGFNAVHGYYIQISRGQSHLAPINYMRRQTLKNAERYIIPELKEYEDKVLTSKGKALALEKQLYEELFDLLLPH 538 (800)
T ss_dssp TCTTCEEEEETTTEEEEEEEHHHHTTSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred CCCCEEEEECCCCEEEEEEECCCCCCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99814787647313999984320013885127864026887884789999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999999999899999999998623998664340699963256603765604401366101256655668862899983
Q 001405 720 YAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITG 799 (1083)
Q Consensus 720 ~~~l~~~~~~ia~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~~~i~~itG 799 (1083)
.+.|..+.+.+++|||++|+|.+|...+||+|.++++. .+.+++||||+++...++.+|+||++|+ +.|++++|||
T Consensus 539 ~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~P~~~~~~---~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItG 614 (800)
T 1wb9_A 539 LEALQQSASALAELDVLVNLAERAYTLNYTCPTFIDKP---GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITG 614 (800)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCEECSSS---CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEECCCC---CEEEEECCCCEEECCCCCCEEEECCCCC-CCCCEEEEEC
T ss_conf 99999999999999999999999986898364777998---7899954163787247983651023126-7885899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 89998136997779999985405533465310206999986089501697202025899999999999589992999829
Q 001405 800 PNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDE 879 (1083)
Q Consensus 800 pN~~GKSTlLr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~Stf~~em~~~~~il~~~~~~sLiilDE 879 (1083)
|||||||||||+++++.+|+|.|++||+..+.+++++++|++++..|++..+.|+|+.+|.+++.++..+++++|+|+||
T Consensus 615 pNGsGKSTlLr~iagl~~~~q~G~~vpa~~~~i~~~~~i~~~~~~~d~l~~~~stf~~e~~~~~~il~~a~~psLlLLDE 694 (800)
T 1wb9_A 615 PNMGGKSTYMRQTALIALMAYIGSYVPAQKVEIGPIDRIFTRVGAADDLASGRSTFMVEMTETANILHNATEYSLVLMDE 694 (800)
T ss_dssp CTTSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCCEEEEEEC-----------CHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCHHCCCCEEHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99987689999999889887518642132045421999876588788887426555688999999998456997899979
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99999979999999999999982799199998076579997523069721138999852255799899999944565765
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKV 959 (1083)
Q Consensus 880 ~~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 959 (1083)
|++|||+.++.++++++++++.+..++++||+||+++++.+.+..++ +.|+||.+... .+.++|+|++
T Consensus 695 p~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~-v~n~~~~~~~~-----------~~~l~~~ykl 762 (800)
T 1wb9_A 695 IGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEG-VANVHLDALEH-----------GDTIAFMHSV 762 (800)
T ss_dssp CCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTT-EEEEEEEEEEE-----------TTEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHC-EEEEEEEEEEC-----------CCCEEEEEEE
T ss_conf 98789866799999999999986239868998378899987443202-37789999972-----------8917898799
Q ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 489998838999999989998999999999999999
Q 001405 960 VPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995 (1083)
Q Consensus 960 ~~G~~~~Sygi~vA~~aGip~~vi~~A~~i~~~l~~ 995 (1083)
.+|.+++|||++||+++|+|++||++|++++.++++
T Consensus 763 ~~G~~~~S~gi~vA~~~GlP~~vi~rA~~~l~~le~ 798 (800)
T 1wb9_A 763 QDGAASKSYGLAVAALAGVPKEVIKRARQKLRELES 798 (800)
T ss_dssp EESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHHT
T ss_pred EECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 878999858999999819899999999999998761
No 4
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=1.00 E-value=1 Score=1157.31 Aligned_cols=749 Identities=30% Similarity=0.422 Sum_probs=639.5
Q ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECHHHHHHHHHHCCCCCCC----CCCEECCCCCCCHHHHHHHHHHCC
Q ss_conf 9999979999999984299909999848679982187999998837511379----984030226668689999999828
Q 001405 86 NKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAHLD----HNFMTASIPTFRLNVHVRRLVNAG 161 (1083)
Q Consensus 86 ~~~~TP~~~Qy~~lK~~~~D~illfr~G~FYElf~eDA~~~a~~L~i~~~~~----~~~~~aGfP~~~l~~yl~rLV~~G 161 (1083)
..++||||||||++|++|||+||||||||||||||+||+++|++|||+++.+ .++||||||+|+++.|+++||++|
T Consensus 10 ~~~~tp~~~qy~~iK~~~~d~~l~~r~GdFYE~f~~DA~~~~~~L~i~lt~r~~~~~~~pm~GvP~~~~~~y~~~Lv~~G 89 (765)
T 1ewq_A 10 PGPLPPLLQQYVELRDQYPDYLLLFQVGDFYECFGEDAERLARALGLVLTHKTSKDFTTPMAGIPLRAFEAYAERLLKMG 89 (765)
T ss_dssp CSCCCHHHHHHHHHHHHCTTSEEEEEETTEEEEEHHHHHHHHHHHTCCCEEEECSSCEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEEECCCEEEECHHHHHHHHHHHCCEEECCCCCCCCCCEECCCHHHHHHHHHHHHHCC
T ss_conf 89998499999999987899799996486157717789999997095883567889977252583889999999999779
Q ss_pred CEEEEEECCCCHHHHCCCCCCCCCEEECCEEECCCCEEECCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCC
Q ss_conf 77999922565677609999888701121100133024104456999898899882699999406897543467668986
Q 001405 162 FKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAEDVGGGEDGCGGESNYLVCVVDDDGNVGKIRNGVFGDGF 241 (1083)
Q Consensus 162 ykVaiveQ~Et~~~k~~~~~~~~~~~R~v~~i~TpgT~~~~~~l~~~~~~~~~~~~yLlaI~~~~~~~~~~~~~~~~~~~ 241 (1083)
||||||||+|+|+.. +|+|+|+|+|||||||++|++++ . ..+|||+||+ ...
T Consensus 90 ~kVai~eQ~e~~~~~------kg~v~R~v~~v~TpGT~~~~~~l-~------~~~n~l~ai~-~~~-------------- 141 (765)
T 1ewq_A 90 FRLAVADQVEPAEEA------EGLVRREVTQLLTPGTLLQESLL-P------REANYLAAIA-TGD-------------- 141 (765)
T ss_dssp CCEEEEEECSCGGGC------SSSCCEEEEEEECGGGCCCGGGS-C------SSCCCEEEEE-ESS--------------
T ss_pred CEEEEEECCCCCCCC------CCCEEEEEEEEECCCEECCHHHC-C------CCCCEEEEEE-ECC--------------
T ss_conf 879999468885334------67416899999757500353223-7------7786899999-589--------------
Q ss_pred CCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHCCCCCCCEEEECCCCCCCCCH
Q ss_conf 62699999984567189999137111788999986258628993899974899999983299986124205765556200
Q 001405 242 DVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSKQTEKMLLAYAGPASNVRVECASRDCFIGGG 321 (1083)
Q Consensus 242 ~~~iGia~vD~sTGe~~~~ef~D~~~~~~L~t~L~~~~P~EIii~~~ls~~~~k~l~~~~~~~~~~~i~~~~~~~f~~~~ 321 (1083)
.+|+||+|+|||+|.+++|.|+ ++|.+.|.+++|+|||++..++. +.. .++..+.| |+.
T Consensus 142 --~~Gla~~D~stg~~~~~~~~d~---~~l~~~l~~~~P~Eil~~~~~~~-----~~~--------~~~~~~~~-f~~-- 200 (765)
T 1ewq_A 142 --GWGLAFLDVSTGEFKGTVLKSK---SALYDELFRHRPAEVLLAPELLE-----NGA--------FLDEFRKR-FPV-- 200 (765)
T ss_dssp --SEEEEEEETTTTEEEEEEESSH---HHHHHHHHHHCCSEEEECHHHHH-----CHH--------HHHHHHHH-CCS--
T ss_pred --EEEEEEEECCCCEEEEEEECCH---HHHHHHHHHCCCEEEEECCCHHH-----HHH--------HHHHCCCC-CCH--
T ss_conf --8999999987777999983588---99999997269809996687377-----777--------76515000-688--
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCEECCCCC
Q ss_conf 69999998530167866767666877654578740011015970899999999999999835301210278822218998
Q 001405 322 ALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGASFRSLSGSM 401 (1083)
Q Consensus 322 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Al~~ll~YL~~~~~~~~~~~~~~~~~~~~~~ 401 (1083)
..+..+| ... ++.+ +.+++|+|+++.||+.++..... ..+++.+..++
T Consensus 201 --~~l~~~~------------------~~~--------~~~~--~~~~~a~g~ll~Yl~~~~~~~~~--~~~~~~~~~~~ 248 (765)
T 1ewq_A 201 --MLSEAPF------------------EPE--------GEGP--LALRRARGALLAYAQRTQGGALS--LQPFRFYDPGA 248 (765)
T ss_dssp --EEECCCC------------------CCC--------SSSC--HHHHHHHHHHHHHHHHHHTSCCC--CCCCEECCGGG
T ss_pred --HHHHHHH------------------CCC--------CCCC--HHHHHHHHHHHHHHHHHHHCCCC--CCCCEEECCCC
T ss_conf --9999884------------------604--------4587--79999999999999996022125--57868977788
Q ss_pred EEEECHHHHHHCCCEEECCCCCCCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 07828856750100530589875440766310258972479999884172899599999999999999711775555555
Q 001405 402 EMTLSANTLQQLEVLRNNSNGSEYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESMGSYRTSESV 481 (1083)
Q Consensus 402 ~M~LD~~Tl~nLEIl~n~~dg~~~gSLl~lLn~T~T~~G~RLLR~WLl~PL~d~~~I~~RlDaVe~L~~~~~~~~~~~~~ 481 (1083)
+|.||.+|++||||++|.+ | +||||+++|+|+|+||+|+||+||++|++|.+.|++|||+|++|.++.
T Consensus 249 ~m~lD~~t~~~LEl~~~~~-~--~gsL~~~ld~t~T~~G~RlL~~wl~~Pl~d~~~I~~R~~~V~~l~~~~--------- 316 (765)
T 1ewq_A 249 FMRLPEATLRALEVFEPLR-G--QDTLFSVLDETRTAPGRRLLQSWLRHPLLDRGPLEARLDRVEGFVREG--------- 316 (765)
T ss_dssp SCBCCHHHHHHTTSSSCSS-S--CCCHHHHHCCCSSHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHCH---------
T ss_pred EEEECHHHHHHCCCCCCCC-C--CCHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCH---------
T ss_conf 6996689997375854789-6--116999868887979999999976574789999999999999997398---------
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 66677887423330128999999999728998879999889706789257999999999999999997511200110000
Q 001405 482 GQHDEKNSDVTIVEPQFYYILSSVLTSLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHIDGEYREKVTS 561 (1083)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~l~~l~~~Lk~i~DlERll~ri~~~~a~~~d~~~l~~~l~~~~~~l~~l~~~~~~~~~~~~ 561 (1083)
.++..++..|++++|+||+++|+..++++++|+..+.+.+.. ...+..+..
T Consensus 317 ------------------~~~~~l~~~L~~~~Dler~l~r~~~~~~~~~dl~~l~~~l~~-~~~l~~~l~---------- 367 (765)
T 1ewq_A 317 ------------------ALREGVRRLLYRLADLERLATRLELGRASPKDLGALRRSLQI-LPELRALLG---------- 367 (765)
T ss_dssp ------------------HHHHHHHHHHTTCCCHHHHHHHHHTTCCCHHHHHHHHHHHHH-HHHHHHHHC----------
T ss_pred ------------------HHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHH----------
T ss_conf ------------------999988998735778899999997289988999999999999-999999998----------
Q ss_pred CHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00008999999983399335656999999997776430695444103899999999999999999999999999999981
Q 001405 562 KTLHSALLKRLILTASSPAVIGKAAKLLSTVNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAKEELDSLINMCRKQL 641 (1083)
Q Consensus 562 ~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~i~~~~~~~~~~~~~~~i~~g~~~eLd~lr~~i~~i~~~l~~ll~~~~~~l 641 (1083)
+...+.. ..+....+...|+.+.... ..+.+.+++|++++||.+|+.+.+.++++.+++.++++.+
T Consensus 368 ----------l~~~l~~--~~~l~~~i~~~i~~~~~~~--~~~~~~i~~g~~~~Ld~lr~~~~~~~~~l~~~~~~~~~~~ 433 (765)
T 1ewq_A 368 ----------EEVGLPD--LSPLKEELEAALVEDPPLK--VSEGGLIREGYDPDLDALRAAHREGVAYFLELEERERERT 433 (765)
T ss_dssp ----------TTSCCCC--CHHHHHHHHHHBCSSCCSC--TTSSCCBCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------HHHCCCC--HHHHHHHHHHHHCCCCHHH--HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ----------7751653--7999999999863464344--2047753788789999999999999999999999999972
Q ss_pred CCCCCEEEEECCCEEEEECCCC--CCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9986201575270699972567--77898379960037859983957899999999999999999999899999987446
Q 001405 642 GMRNLEFMSVSGITHLIELPAN--FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEELTIVCRAAWDSFLKEFGGY 719 (1083)
Q Consensus 642 ~~~~l~~~~~~~~~~~iev~~~--~~~p~~~i~~s~~~~~~r~~t~ei~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 719 (1083)
+++.+++.+....+|+|+|+.. .++|+.|+..++.++..||++|++.++++++..+.+++...+..++.++...+..+
T Consensus 434 ~~~~l~i~~~~~~gy~i~v~~~~~~~vp~~~i~~~s~~~~~rf~tp~l~el~~~i~~~~~~~~~~e~~i~~~L~~~i~~~ 513 (765)
T 1ewq_A 434 GIPTLKVGYNAVFGYYLEVTRPYYERVPKEYRPVQTLKDRQRYTLPEMKEKEREVYRLEALIRRREEEVFLEVRERAKRQ 513 (765)
T ss_dssp CCTTCEEEEETTTEEEEEEEGGGGGGSCTTCEEEEECSSEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEEECCCEEEEEEEEHHHHHCCCCCEEEEEECCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99955898626415999964676503986359987226875787789999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99999999999899999999998623998664340699963256603765604401366101256655668862899983
Q 001405 720 YAEFQAAVQALAALDCLHALATLSRNKNFVRPVFVDDHEPVQIHICSGRHPVLDTILLDNFVPNDTNLHAEREYCQIITG 799 (1083)
Q Consensus 720 ~~~l~~~~~~ia~lD~l~s~a~~a~~~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~~~v~ndi~l~~~~~~i~~itG 799 (1083)
...|..+.+++++||+++|+|.+|...+||+|.+ ++ .+.++++|||+++. ++.+|+||++|+ |++++|+|
T Consensus 514 ~~~l~~~~~~la~LD~l~s~a~~a~~~~~~~P~~--~~---~i~i~~~rHP~le~--~~~~vl~disl~---g~i~~I~G 583 (765)
T 1ewq_A 514 AEALREAARILAELDVYAALAEVAVRYGYVRPRF--GD---RLQIRAGRHPVVER--RTEFVPNDLEMA---HELVLITG 583 (765)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCBCCEE--SS---SEEEEEECCTTGGG--TSCCCCEEEEES---SCEEEEES
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECC--CC---CEEEEEEECCEECC--CCCEEEEECCCC---CCEEEEEC
T ss_conf 9999999999999999995499998679334135--77---38999727863706--884575110577---86899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCHHHHHHHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 89998136997779999985405533465310206999986089501697202025899999999999589992999829
Q 001405 800 PNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEELNEASYILRNCTAQSLVIVDE 879 (1083)
Q Consensus 800 pN~~GKSTlLr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~Stf~~em~~~~~il~~~~~~sLiilDE 879 (1083)
|||||||||||+++++.+|+|.|+++|+..+.+++++++|++++..|++..+.|+|+.+|.+++.++..+++++|+|+||
T Consensus 584 pNGsGKSTlLr~iagl~~~~~~G~~vpa~~~~i~~v~~i~~~~~~~d~l~~g~S~~~~e~~~la~il~~a~~p~LlLLDE 663 (765)
T 1ewq_A 584 PNMAGKSTFLRQTALIALLAQVGSFVPAEEAHLPLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILKEATENSLVLLDE 663 (765)
T ss_dssp CSSSSHHHHHHHHHHHHHHHTTTCCBSSSEEEECCCSEEEEECCC------CCSHHHHHHHHHHHHHHHCCTTEEEEEES
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCEEEHHCCCEEEHHHHHCCCCHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEC
T ss_conf 99987689999998656531168553044051343777653197899987423677899999999998566897899988
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCCCCCCEEEEEEE
Q ss_conf 99999979999999999999982799199998076579997523069721138999852255799899999944565765
Q 001405 880 LGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTSHKVMGPMDSKSDQDVTYLYKV 959 (1083)
Q Consensus 880 ~~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~l 959 (1083)
||+||++.|+.+++++++++|.+ .++++||+||++++..+. .++ +.|+||.+.. + ++.++|+|++
T Consensus 664 pgrGTs~lD~~~~~~~i~~~L~~-~g~~vl~~TH~~~l~~~~--~~~-v~n~~~~~~~--------~---~~~l~f~ykl 728 (765)
T 1ewq_A 664 VGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYFELTALG--LPR-LKNLHVAARE--------E---AGGLVFYHQV 728 (765)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCHHHHTCC--CTT-EEEEEEEEEC--------C---SSSCEEEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHHHHHH--HHC-CEEEEEEEEE--------C---CCEEEEEEEE
T ss_conf 99888876899999999999996-899899992788999765--416-0589999997--------0---8907898789
Q ss_pred CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 489998838999999989998999999999999999
Q 001405 960 VPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEA 995 (1083)
Q Consensus 960 ~~G~~~~Sygi~vA~~aGip~~vi~~A~~i~~~l~~ 995 (1083)
.+|.+++|||++||+++|+|++||++|++++.++++
T Consensus 729 ~~G~~~~Sygi~vA~~aGlP~~VI~rA~~~l~~le~ 764 (765)
T 1ewq_A 729 LPGPASKSYGVEVAAMAGLPKEVVARARALLQAMAA 764 (765)
T ss_dssp EESCCSSCCHHHHHHHTTCCHHHHHHHHHHHHHHTT
T ss_pred EECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHC
T ss_conf 778999966999999829899999999999998741
No 5
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=1.00 E-value=1 Score=1118.42 Aligned_cols=818 Identities=24% Similarity=0.351 Sum_probs=671.8
Q ss_pred CCCCCCHHHHHHHHHHHHCCCEEEEEEECCEEEEECHHHHHHHHHHCCCCC--------CCCCCEECCCCCCCHHHHHHH
Q ss_conf 999999799999999842999099998486799821879999988375113--------799840302266686899999
Q 001405 85 HNKKYTPLEQQVVELKTKYPDVLLMIEVGYKFRFFGEDAEMAAKVLGIYAH--------LDHNFMTASIPTFRLNVHVRR 156 (1083)
Q Consensus 85 ~~~~~TP~~~Qy~~lK~~~~D~illfr~G~FYElf~eDA~~~a~~L~i~~~--------~~~~~~~aGfP~~~l~~yl~r 156 (1083)
+..+.|||++|||+||++|||+|+||++|||||+|++||+.+|+.|+++.+ .+.+++++++|.+.++.|+++
T Consensus 12 ~~~~~~~f~~~y~~Lk~k~~dtv~~F~~GdfYe~~~~DA~~vA~~l~~t~~~~k~~~~~~~~~~~~v~i~~~~~~~~l~~ 91 (934)
T 3thx_A 12 ESAAEVGFVRFFQGMPEKPTTTVRLFDRGDFYTAHGEDALLAAREVFKTQGVIKYMGPAGAKNLQSVVLSKMNFESFVKD 91 (934)
T ss_dssp CTHHHHHHHHHHHTSCCCCTTEEEEEECSSEEEEETHHHHHHHHHTTSSSTTCEEESSSSCCCEEEEEEEHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCCCCCEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECHHHHHHHHHH
T ss_conf 21124479999986664699969999738744563646999999971300565404778777877564079999999999
Q ss_pred -HHHCCCEEEEEECCCCHHHHCCCCCCCCCEEECCEEECCCCEEECCC-CCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
Q ss_conf -99828779999225656776099998887011211001330241044-5699989889988269999940689754346
Q 001405 157 -LVNAGFKVGVVKQTETAAIKAHGPGKAGPFGRGLSALYTKATLEAAE-DVGGGEDGCGGESNYLVCVVDDDGNVGKIRN 234 (1083)
Q Consensus 157 -LV~~GykVaiveQ~Et~~~k~~~~~~~~~~~R~v~~i~TpgT~~~~~-~l~~~~~~~~~~~~yLlaI~~~~~~~~~~~~ 234 (1083)
|+.+||||+||+|.+++. .++.++|+|++++||||+++.+ .+.++.+ ...++||+||.+....
T Consensus 92 ~Ll~~g~rVei~~q~~~~~-------~~~~~~r~l~~~~TPGnl~~~ed~L~~~~d--~~~~~~l~AIk~~~~~------ 156 (934)
T 3thx_A 92 LLLVRQYRVEVYKNRAGNK-------ASKENDWYLAYKASPGNLSQFEDILFGNND--MSASIGVVGVKMSAVD------ 156 (934)
T ss_dssp HHHTTCCEEEEEEECC-----------CCCCCEEEEEEEBTTBCTTCHHHHC----------CCEEEEEECCSS------
T ss_pred HHHHCCCEEEEEECCCCCC-------CCCCCCEEEEEEECCCCHHHHHHHHHCCCC--CCCCCEEEEEEEEECC------
T ss_conf 9997697799982578643-------467651589998889708888887514654--3336427999995058------
Q ss_pred CCCCCCCCCEEEEEEEECCCCCEEEEEECCCHHHHHHHHHHHCCCCCEEEECCCCCH-HHHHHHHHHCCCCCCCEEEECC
Q ss_conf 766898662699999984567189999137111788999986258628993899974-8999999832999861242057
Q 001405 235 GVFGDGFDVRLGVVAVEISTGDVVYGEFNDGFLRSGLEAVLLSLSPAELLLGQPLSK-QTEKMLLAYAGPASNVRVECAS 313 (1083)
Q Consensus 235 ~~~~~~~~~~iGia~vD~sTGe~~~~ef~D~~~~~~L~t~L~~~~P~EIii~~~ls~-~~~k~l~~~~~~~~~~~i~~~~ 313 (1083)
....+|+||+|+|||+|.+++|.|+..++.|.+.|.+++|+|||+++.... +..++...... .++.++..+
T Consensus 157 ------~~~~~Gla~~D~stge~~~~~~~d~~~~~~l~~~l~~~~P~Eil~~~~~~~~~~~~l~~~~~~--~~~~~~~~~ 228 (934)
T 3thx_A 157 ------GQRQVGVGYVDSIQRKLGLCEFPDNDQFSNLEALLIQIGPKECVLPGGETAGDMGKLRQIIQR--GGILITERK 228 (934)
T ss_dssp ------SSCEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHCCSEEEEESSCCCHHHHHHHHHHHH--HTCEEEEEC
T ss_pred ------CCCEEEEEEEECCCCEEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHH--CCCEEEECC
T ss_conf ------886799999998887699996577258999999998679859996078775107899999860--684478566
Q ss_pred CCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCC
Q ss_conf 65556200699999985301678667676668776545787400110159708999999999999998353012102788
Q 001405 314 RDCFIGGGALAEVMSLYENMGEDTLSNNEDQNMDVPEQGNHRSAIEGIMNMPDLAVQALALTIRHLKQFGLERIMCLGAS 393 (1083)
Q Consensus 314 ~~~f~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Al~~ll~YL~~~~~~~~~~~~~~ 393 (1083)
.++|+...+...+..++........ ...++... + .+++++|+|+++.||+.++....+.. ..
T Consensus 229 ~~~f~~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~-~-~~~~~~a~gall~Yl~~~~~~~~~~~-~~ 290 (934)
T 3thx_A 229 KADFSTKDIYQDLNRLLKGKKGEQM---------------NSAVLPEM-E-NQVAVSSLSAVIKFLELLSDDSNFGQ-FE 290 (934)
T ss_dssp GGGGCCSSHHHHHHHHBCCCTTSCC---------------CGGGCGGG-G-CHHHHHHHHHHHHHHTGGGCGGGTTC-BE
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCC---------------CCCCCCCC-C-CHHHHHHHHHHHHHHHHHCCCCCCCC-CC
T ss_conf 2426877899999998542454444---------------43444433-4-28999999999999999667543354-65
Q ss_pred CEECCCCCEEEECHHHHHHCCCEEECCCCC-CCCCHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Q ss_conf 222189980782885675010053058987-5440766310258972479999884172899599999999999999711
Q 001405 394 FRSLSGSMEMTLSANTLQQLEVLRNNSNGS-EYGTLLHIMNHTLTIYGSRLLRRWVTHPLCDRNLISARLDAVSEIAESM 472 (1083)
Q Consensus 394 ~~~~~~~~~M~LD~~Tl~nLEIl~n~~dg~-~~gSLl~lLn~T~T~~G~RLLR~WLl~PL~d~~~I~~RlDaVe~L~~~~ 472 (1083)
++.+..+++|.||++|++||||++|.++++ .+||||++||||+|+||+||||+||++||+|++.|++|||+|++|.++.
T Consensus 291 ~~~~~~~~~m~lD~~t~~nLEl~~~~~~~~~~~~SL~~~ld~t~T~~G~RlLr~wl~~Pl~d~~~I~~R~d~Ve~l~~~~ 370 (934)
T 3thx_A 291 LTTFDFSQYMKLDIAAVRALNLFQGSVEDTTGSQSLAALLNKCKTPQGQRLVNQWIKQPLMDKNRIEERLNLVEAFVEDA 370 (934)
T ss_dssp EEECCGGGBCEECHHHHHHTTSCC---------CCHHHHHCCCSSHHHHHHHHHHHHSCBCCHHHHHHHHHHHHHHHSCH
T ss_pred CEEECCCCEEEECHHHHHHCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCH
T ss_conf 35776788598578889636126457999877774999864577879999999997486889999999999999985095
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 77555555566677887423330128999999999-72899887999988970678925799999999999999999751
Q 001405 473 GSYRTSESVGQHDEKNSDVTIVEPQFYYILSSVLT-SLGRSPDIQRGITRIFHRTATPSEFIAVMQAILYAGKQLQQLHI 551 (1083)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-~Lk~i~DlERll~ri~~~~a~~~d~~~l~~~l~~~~~~l~~l~~ 551 (1083)
.++..++. .|++++|+||+++|+..++++++|++.+.+++.........+.-
T Consensus 371 ---------------------------~~~~~l~~~~L~~i~DleRl~~ri~~~~~~~~dl~~l~~~l~~~~~l~~~l~~ 423 (934)
T 3thx_A 371 ---------------------------ELRQTLQEDLLRRFPDLNRLAKKFQRQAANLQDCYRLYQGINQLPNVIQALEK 423 (934)
T ss_dssp ---------------------------HHHHHHHTTTGGGCCCHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred ---------------------------HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf ---------------------------89999999986478789999999962899999999999999999999999985
Q ss_pred CCCCHHHHHHCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH----HHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 1200110000000089999999833993356569999999----977764306954441038999999999999999999
Q 001405 552 DGEYREKVTSKTLHSALLKRLILTASSPAVIGKAAKLLST----VNKEAADQGDLLNLMIISNGQFSEVARARKAVQSAK 627 (1083)
Q Consensus 552 ~~~~~~~~~~~~~~s~lL~~l~~~~~~~~~~~~~~~ll~~----i~~~~~~~~~~~~~~~i~~g~~~eLd~lr~~i~~i~ 627 (1083)
... .....+...++..+... ...+..+.+. |+.+.... ..+.|++|++++||++|+.+++++
T Consensus 424 ~~~----~~~~~l~~~~~~~l~~~------~~~l~~~~~~i~~~i~~~~~~~----g~~~i~~g~~~~Ld~lr~~~~~~~ 489 (934)
T 3thx_A 424 HEG----KHQKLLLAVFVTPLTDL------RSDFSKFQEMIETTLDMDQVEN----HEFLVKPSFDPNLSELREIMNDLE 489 (934)
T ss_dssp TCC----SSSTTGGGGTHHHHHHH------HHHHHHHHHHHHTTBCTTGGGT----TCCCBCTTSSHHHHHHHHHHHHHH
T ss_pred CCC----CCCHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHCCCHHHC----CCCEECCCCCHHHHHHHHHHHHHH
T ss_conf 533----11067898888899988------7659999999999857231424----995138998999999999999999
Q ss_pred HHHHHHHHHHHHHHCC---CCCEEEEECCCEEEEECCCC----CCCCCCEEEEEECCCEEEEECHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998199---86201575270699972567----7789837996003785998395789999999999999
Q 001405 628 EELDSLINMCRKQLGM---RNLEFMSVSGITHLIELPAN----FKVPLNWAKVNSTKKTIRYHSPEVLTALDQLALANEE 700 (1083)
Q Consensus 628 ~~l~~ll~~~~~~l~~---~~l~~~~~~~~~~~iev~~~----~~~p~~~i~~s~~~~~~r~~t~ei~~l~~~l~~~~~~ 700 (1083)
+++.+++.++++.+++ .++++.++...+|+|+|+.. .+.|..|+.++++++.+||+|+++.++.+++..++++
T Consensus 490 ~~l~~~~~~~~~~~~~~~~~~lk~~~~~~~Gy~i~v~~~~~~~~~~~~~~~~~~t~~~~~rf~t~el~~l~~~~~~~~~~ 569 (934)
T 3thx_A 490 KKMQSTLISAARDLGLDPGKQIKLDSSAQFGYYFRVTCKEEKVLRNNKNFSTVDIQKNGVKFTNSKLTSLNEEYTKNKTE 569 (934)
T ss_dssp HHHHHHHHHHHHHSCCCBTTTBEEEECC--CEEEEECHHHHTTTTTCSSCEEEEEC--CEEEECTTHHHHHHHHTTTTHH
T ss_pred HHHHHHHHHHHHHHCCCCCCEEEEEEECCCEEEEEEEECHHHCCCCCCCCEEEECCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 99999999999984898565279998164028999984265445788781899713573999898999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCCCCEEECCCCCCEEEEECCCCCEEEECCCC
Q ss_conf 999999989999998744699999999999899999999998623--998664340699963256603765604401366
Q 001405 701 LTIVCRAAWDSFLKEFGGYYAEFQAAVQALAALDCLHALATLSRN--KNFVRPVFVDDHEPVQIHICSGRHPVLDTILLD 778 (1083)
Q Consensus 701 ~~~~~~~~~~~l~~~~~~~~~~l~~~~~~ia~lD~l~s~a~~a~~--~~~~~P~~~~~~~~~~i~i~~~rhP~l~~~~~~ 778 (1083)
+...+.+++.++...+..+.+.|..+.+.+++|||++|+|.+|.. .+||||.+.+.++ ..+.++++|||+++...++
T Consensus 570 ~~~~e~~i~~~l~~~~~~~~~~l~~~~~~la~lD~l~s~A~~a~~~~~~~~rP~~~~~~~-~~i~i~~~rHP~le~~~~~ 648 (934)
T 3thx_A 570 YEEAQDAIVKEIVNISSGYVEPMQTLNDVLAQLDAVVSFAHVSNGAPVPYVRPAILEKGQ-GRIILKASRHACVEVQDEI 648 (934)
T ss_dssp HHHHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCBCCEEECTTS-CEEEEEEECCTTTTTC--C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCC-CCEEEECCCCCHHHHCCCC
T ss_conf 999999999999999999999999999999999999999999985668984870002787-5407636756124433786
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHHHHCHHHHHHH
Q ss_conf 10125665566886289998389998136997779999985405533465310206999986089501697202025899
Q 001405 779 NFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMAQVGSFVPASSAELHVLDGIYTRMGASDSIQQGRSTFLEE 858 (1083)
Q Consensus 779 ~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~laq~g~~vpa~~~~~~~~d~i~~~~~~~d~~~~~~Stf~~e 858 (1083)
.+||||++|+.+.|++++||||||||||||||+++++++|+|+|+|||+..+.+++++++++++|..|++..+.|+|+++
T Consensus 649 ~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l~~~lStf~~e 728 (934)
T 3thx_A 649 AFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQLKGVSTFMAE 728 (934)
T ss_dssp CCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC---------CHHHHH
T ss_pred EEECCCCEEECCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_conf 06534533303797189998889987779999999989987628843442330049999998638165387757666799
Q ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHCCCCCCEEEEEEEEE
Q ss_conf 99999999958999299982999999979999999999999982799199998076579997523069721138999852
Q 001405 859 LNEASYILRNCTAQSLVIVDELGRGTSTHDGVAIAYATLDYLLEHKKCMVLFVTHYPKIADIKTKFTGSVGTYHVSYLTS 938 (1083)
Q Consensus 859 m~~~~~il~~~~~~sLiilDE~~~Gtd~~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~l~~~~~~~v~~~~~~~~~~ 938 (1083)
|.+++.+++.+++++|+|||||++|||+.++.++++++++++.+..++++||+||+++++.+.+..+. +.++||.+...
T Consensus 729 ~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~-v~ng~v~~~~~ 807 (934)
T 3thx_A 729 MLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPT-VNNLHVTALTT 807 (934)
T ss_dssp HHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTT-EEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCE-EEEEEEEEEEC
T ss_conf 99999999846399199996998899999999999999999985679999999273799987320400-07669999844
Q ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 25579989999994456576548999883899999998999899999999999999988
Q 001405 939 HKVMGPMDSKSDQDVTYLYKVVPGVSESSFGFKVAQLAQLPPSCISRATVIAAKLEAEV 997 (1083)
Q Consensus 939 ~~~~~~~~~~~~~~~~~~y~l~~G~~~~Sygi~vA~~aGip~~vi~~A~~i~~~l~~~~ 997 (1083)
.+.++|+|++.+|.+++|||++||+++|+|.+||++|++++.+|++..
T Consensus 808 -----------~~~l~~~y~l~~G~~~~S~gi~vA~~~glp~~vi~~A~~~~~~le~~~ 855 (934)
T 3thx_A 808 -----------EETLTMLYQVKKGVCDQSFGIHVAELANFPKHVIECAKQKALELEEFQ 855 (934)
T ss_dssp -----------TTEEEEEEEEEESCCCCCCHHHHHHHTTCCHHHHHHHHHHHHHTTTTT
T ss_pred -----------CCCEEEEEEEEECCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC
T ss_conf -----------882778888866888986499999983989999999999999997124
No 6
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=1.00 E-value=1 Score=144.42 Aligned_cols=145 Identities=17% Similarity=0.150 Sum_probs=100.5
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CC
Q ss_conf 0136610125665566886289998389998136997779999985------------------40553346531---02
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---EL 832 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~la------------------q~g~~vpa~~~---~~ 832 (1083)
+.|++..+.+|++|+++.|++++|+||||||||||||+|+++.-.. ..-.||++..+ .+
T Consensus 11 ~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l 90 (381)
T 3rlf_A 11 KAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 90 (381)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECTTCCCCTTS
T ss_pred EEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCC
T ss_conf 99899999965689987998999996899559999999976998897199999999987997788889990687578999
Q ss_pred CHHHH---------------------HHHHCCCCHHHHHCHHHHHHHHHH-HHHHHHHCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 06999---------------------986089501697202025899999-99999958999299982999999979999
Q 001405 833 HVLDG---------------------IYTRMGASDSIQQGRSTFLEELNE-ASYILRNCTAQSLVIVDELGRGTSTHDGV 890 (1083)
Q Consensus 833 ~~~d~---------------------i~~~~~~~d~~~~~~Stf~~em~~-~~~il~~~~~~sLiilDE~~~Gtd~~~~~ 890 (1083)
.+.++ ++..++..+......+.+++.+++ ++.+...+.+|.++|+|||++|+|+....
T Consensus 91 tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~ 170 (381)
T 3rlf_A 91 SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170 (381)
T ss_dssp CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHH
T ss_conf 99999999997759998999999999998859941653992579999999999999998199999998987679999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 99999999998279919999807657999
Q 001405 891 AIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 891 ~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.+ ...+..+.++.+.++|++||+.+.+.
T Consensus 171 ~l-~~~l~~l~~~~g~tii~vTHd~~ea~ 198 (381)
T 3rlf_A 171 QM-RIEISRLHKRLGRTMIYVTHDQVEAM 198 (381)
T ss_dssp HH-HHHHHHHHHHHCCEEEEECSCHHHHH
T ss_pred HH-HHHHHHHHHHCCCEEEEEECCHHHHH
T ss_conf 99-99999999867988999988999999
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=144.01 Aligned_cols=145 Identities=17% Similarity=0.107 Sum_probs=99.4
Q ss_pred ECCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH----------------------HCCCCCCCCCC-
Q ss_conf 0136610125665566886289998389998136997779999985----------------------40553346531-
Q 001405 774 TILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA----------------------QVGSFVPASSA- 830 (1083)
Q Consensus 774 ~~~~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~la----------------------q~g~~vpa~~~- 830 (1083)
+.|++..+.+|++|++..|++++|+||||||||||||+|+++.-.. ..-.||+...+
T Consensus 12 ~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l 91 (359)
T 3fvq_A 12 KSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVL 91 (359)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCC
T ss_pred EEECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCCCCCHHHCCEEEEECCCCC
T ss_conf 99899888975389995998999999998059999999966998997389999999754556655410888999078757
Q ss_pred --CCCHHHHHH---------------------HHCCCCHHHHHCHHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf --020699998---------------------60895016972020258999-999999995899929998299999997
Q 001405 831 --ELHVLDGIY---------------------TRMGASDSIQQGRSTFLEEL-NEASYILRNCTAQSLVIVDELGRGTST 886 (1083)
Q Consensus 831 --~~~~~d~i~---------------------~~~~~~d~~~~~~Stf~~em-~~~~~il~~~~~~sLiilDE~~~Gtd~ 886 (1083)
.+.+.+++. ..++..+......+.+++.+ ++++.+...+.+|.++|+|||++|+|+
T Consensus 92 ~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~ 171 (359)
T 3fvq_A 92 FPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDE 171 (359)
T ss_dssp CTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred CCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCH
T ss_conf 89999999999999876998689999999999886990375589245799999999999999739999999697436799
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 999999999999998279919999807657999
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+...+.+.+.+ .+.++|++||+.+.+.
T Consensus 172 ~~r~~l~~~l~~~~~~-~g~tvi~vTHd~~ea~ 203 (359)
T 3fvq_A 172 QLRRQIREDMIAALRA-NGKSAVFVSHDREEAL 203 (359)
T ss_dssp HHHHHHHHHHHHHHHH-TTCEEEEECCCHHHHH
T ss_pred HHHHHHHHHHHHHHHH-CCCEEEEEECCHHHHH
T ss_conf 9999999999999985-7998999949999999
No 8
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=1.00 E-value=1 Score=143.88 Aligned_cols=143 Identities=17% Similarity=0.142 Sum_probs=99.4
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHH--------------------HHHHCCCCCCCCC---CCC
Q ss_conf 36610125665566886289998389998136997779999--------------------9854055334653---102
Q 001405 776 LLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIG--------------------IMAQVGSFVPASS---AEL 832 (1083)
Q Consensus 776 ~~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~--------------------~laq~g~~vpa~~---~~~ 832 (1083)
+++..+.++++|++..|++++|+||||||||||+|.++++. -+++...|++... ..+
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 100 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPF 100 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCC
T ss_pred ECCEEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHEEEEEECCCCCCCCC
T ss_conf 59956787658998699899999999985999999996699888738999999977599899853089992377567897
Q ss_pred CHHHH-------------------HHHHCCCCHHHHHCHHHHHHHHHHHHHHHH-HCC------CCCEEEEECCCCCCCH
Q ss_conf 06999-------------------986089501697202025899999999999-589------9929998299999997
Q 001405 833 HVLDG-------------------IYTRMGASDSIQQGRSTFLEELNEASYILR-NCT------AQSLVIVDELGRGTST 886 (1083)
Q Consensus 833 ~~~d~-------------------i~~~~~~~d~~~~~~Stf~~em~~~~~il~-~~~------~~sLiilDE~~~Gtd~ 886 (1083)
.+.++ ++.+++..+......+++++.+++...+.+ .+. +|.++|+|||++|+|+
T Consensus 101 tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~ 180 (266)
T 4g1u_C 101 SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDL 180 (266)
T ss_dssp BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCH
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCH
T ss_conf 99999985542068577999999999875985575599240789999999999999664456889999998396446999
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 999999999999998279919999807657999
Q 001405 887 HDGVAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 887 ~~~~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
.....+ ..++..+.+..+.++|++||+.+.+.
T Consensus 181 ~~~~~i-~~~l~~l~~~~~~tvi~vtHdl~~~~ 212 (266)
T 4g1u_C 181 YHQQHT-LRLLRQLTRQEPLAVCCVLHDLNLAA 212 (266)
T ss_dssp HHHHHH-HHHHHHHHHHSSEEEEEECSCHHHHH
T ss_pred HHHHHH-HHHHHHHHHCCCCEEEEEECCHHHHH
T ss_conf 999999-99999999738989999976989999
No 9
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=1.00 E-value=1 Score=142.18 Aligned_cols=145 Identities=14% Similarity=0.074 Sum_probs=99.2
Q ss_pred ECC-CCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH------------------HCCCCCCCCCC---C
Q ss_conf 013-6610125665566886289998389998136997779999985------------------40553346531---0
Q 001405 774 TIL-LDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---E 831 (1083)
Q Consensus 774 ~~~-~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~la------------------q~g~~vpa~~~---~ 831 (1083)
..| ++..+.++++|+++.|++++|+||||||||||||+|+++.-.. ..-.||+...+ .
T Consensus 22 ~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 101 (355)
T 1z47_A 22 KIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVFQNYALFQH 101 (355)
T ss_dssp ECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEECGGGCCCTT
T ss_pred EEECCCCEEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHCCEEEEECCCCCCCC
T ss_conf 99759978996348999799799999899970999999996799889619999999998687645748999268635789
Q ss_pred CCHHHHH---------------------HHHCCCCHHHHHCHHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHH
Q ss_conf 2069999---------------------860895016972020258999-999999995899929998299999997999
Q 001405 832 LHVLDGI---------------------YTRMGASDSIQQGRSTFLEEL-NEASYILRNCTAQSLVIVDELGRGTSTHDG 889 (1083)
Q Consensus 832 ~~~~d~i---------------------~~~~~~~d~~~~~~Stf~~em-~~~~~il~~~~~~sLiilDE~~~Gtd~~~~ 889 (1083)
+.+.+++ +..++..+......+++++.+ ++++.+...+.+|.++|||||++|+|+...
T Consensus 102 ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r 181 (355)
T 1z47_A 102 MTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIR 181 (355)
T ss_dssp SCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHH
T ss_pred CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHH
T ss_conf 88999999999774998789999999999876994586099201899999999999999739998999697436899999
Q ss_pred HHHHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 999999999998279919999807657999
Q 001405 890 VAIAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 890 ~~i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
..+ +..++.+.+..+.++|++||+.+.+.
T Consensus 182 ~~l-~~~l~~l~~~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 182 REL-RTFVRQVHDEMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp HHH-HHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred HHH-HHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 999-99999999866999999979999999
No 10
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=1.00 E-value=1 Score=141.43 Aligned_cols=144 Identities=16% Similarity=0.085 Sum_probs=98.3
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH------------------HCCCCCCCCCC---CCC
Q ss_conf 136610125665566886289998389998136997779999985------------------40553346531---020
Q 001405 775 ILLDNFVPNDTNLHAEREYCQIITGPNMGGKSCYIRQVALIGIMA------------------QVGSFVPASSA---ELH 833 (1083)
Q Consensus 775 ~~~~~~v~ndi~l~~~~~~i~~itGpN~~GKSTlLr~i~~~~~la------------------q~g~~vpa~~~---~~~ 833 (1083)
.|++..+.++++|+++.|++++|+||||||||||||+|+++.-.. ..-.||+...+ .+.
T Consensus 12 ~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~lt 91 (362)
T 2it1_A 12 KFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMT 91 (362)
T ss_dssp ESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECTTCCCCTTSC
T ss_pred EECCEEEEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEECCEECCCCCHHHCCEEEEECCCCCCCCCC
T ss_conf 98997889755899979989999999993599999999669988850999999999869975784899946764578987
Q ss_pred HHHHH---------------------HHHCCCCHHHHHCHHHHHHHH-HHHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
Q ss_conf 69999---------------------860895016972020258999-99999999589992999829999999799999
Q 001405 834 VLDGI---------------------YTRMGASDSIQQGRSTFLEEL-NEASYILRNCTAQSLVIVDELGRGTSTHDGVA 891 (1083)
Q Consensus 834 ~~d~i---------------------~~~~~~~d~~~~~~Stf~~em-~~~~~il~~~~~~sLiilDE~~~Gtd~~~~~~ 891 (1083)
+.+++ +..++..+......+++++.+ ++++.+...+.+|.++|||||++|+|+.....
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~ 171 (362)
T 2it1_A 92 VYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171 (362)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHH
T ss_conf 99999999876489879999999999988599047608930389999999999999972999999989543689999999
Q ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHH
Q ss_conf 9999999998279919999807657999
Q 001405 892 IAYATLDYLLEHKKCMVLFVTHYPKIAD 919 (1083)
Q Consensus 892 i~~~il~~l~~~~~~~vl~~TH~~~l~~ 919 (1083)
+ ...++.+.+..+.++|++||+.+.+.
T Consensus 172 l-~~~l~~l~~~~g~tvi~vTHd~~~a~ 198 (362)
T 2it1_A 172 V-RAELKRLQKELGITTVYVTHDQAEAL 198 (362)
T ss_dssp H-HHHHHHHHHHHTCEEEEEESCHHHHH
T ss_pred H-HHHHHHHHHHCCCEEEEECCCHHHHH
T ss_conf 9-99999999757989999888889999
Done!