Query 001407
Match_columns 1083
No_of_seqs 991 out of 5704
Neff 9.5
Searched_HMMs 46136
Date Fri Mar 29 00:03:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001407.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001407hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 100.0 4.3E-99 9E-104 968.2 78.4 855 3-1035 203-1100(1153)
2 KOG4658 Apoptotic ATPase [Sign 100.0 7.8E-58 1.7E-62 553.7 27.4 438 5-548 177-651 (889)
3 PLN00113 leucine-rich repeat r 100.0 1.5E-41 3.3E-46 438.6 31.9 512 301-820 42-579 (968)
4 PLN00113 leucine-rich repeat r 100.0 1.1E-38 2.3E-43 412.2 29.2 466 332-807 97-590 (968)
5 PF00931 NB-ARC: NB-ARC domain 100.0 7.7E-34 1.7E-38 313.8 13.6 242 4-251 16-268 (287)
6 KOG4194 Membrane glycoprotein 99.9 1.6E-28 3.5E-33 265.7 4.4 371 396-796 53-447 (873)
7 KOG0444 Cytoskeletal regulator 99.9 6.2E-29 1.3E-33 269.8 -3.0 357 334-721 13-379 (1255)
8 KOG4194 Membrane glycoprotein 99.9 6E-28 1.3E-32 261.3 4.3 353 329-712 79-447 (873)
9 KOG0444 Cytoskeletal regulator 99.9 2.5E-29 5.4E-34 272.9 -7.0 359 352-742 7-379 (1255)
10 KOG0472 Leucine-rich repeat pr 99.9 2.7E-30 5.9E-35 267.9 -16.7 432 349-819 42-535 (565)
11 KOG0472 Leucine-rich repeat pr 99.9 2.3E-28 5E-33 253.7 -4.6 436 327-780 44-541 (565)
12 KOG0618 Serine/threonine phosp 99.9 1.6E-26 3.4E-31 264.1 -3.5 424 333-781 26-490 (1081)
13 PLN03210 Resistant to P. syrin 99.9 5E-23 1.1E-27 265.7 25.5 341 415-803 556-908 (1153)
14 KOG0618 Serine/threonine phosp 99.9 1.5E-23 3.2E-28 240.1 -1.7 384 332-737 95-488 (1081)
15 PRK15387 E3 ubiquitin-protein 99.8 8.9E-19 1.9E-23 209.1 18.1 262 395-721 201-462 (788)
16 PRK15387 E3 ubiquitin-protein 99.8 1.2E-18 2.5E-23 208.1 15.2 255 475-785 205-463 (788)
17 PRK15370 E3 ubiquitin-protein 99.7 2E-17 4.4E-22 199.1 13.2 247 395-717 178-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.7 2.1E-16 4.6E-21 190.4 16.8 223 475-722 182-405 (754)
19 KOG4237 Extracellular matrix p 99.7 1.6E-18 3.4E-23 181.0 -3.2 268 386-716 58-358 (498)
20 KOG0617 Ras suppressor protein 99.6 4E-17 8.6E-22 151.0 -1.2 172 407-632 23-195 (264)
21 KOG4237 Extracellular matrix p 99.6 1.2E-17 2.5E-22 174.6 -6.9 123 330-459 69-199 (498)
22 KOG0617 Ras suppressor protein 99.5 4.7E-16 1E-20 144.0 -1.2 162 514-702 32-194 (264)
23 cd00116 LRR_RI Leucine-rich re 99.5 2.6E-15 5.7E-20 168.9 -1.7 205 510-714 76-317 (319)
24 cd00116 LRR_RI Leucine-rich re 99.4 2.7E-14 5.9E-19 160.7 0.5 225 493-717 24-291 (319)
25 PRK04841 transcriptional regul 99.3 6.4E-11 1.4E-15 153.1 21.1 277 3-298 28-335 (903)
26 KOG4658 Apoptotic ATPase [Sign 99.2 7.7E-12 1.7E-16 153.6 7.5 247 492-742 523-787 (889)
27 PF05729 NACHT: NACHT domain 99.1 8.1E-10 1.8E-14 111.0 12.8 142 8-158 1-163 (166)
28 KOG3207 Beta-tubulin folding c 99.0 8.6E-11 1.9E-15 125.7 2.4 205 512-717 118-339 (505)
29 KOG0532 Leucine-rich repeat (L 99.0 5.7E-11 1.2E-15 130.7 0.8 211 497-714 55-270 (722)
30 TIGR03015 pepcterm_ATPase puta 99.0 1.9E-08 4E-13 110.0 18.5 180 7-193 43-242 (269)
31 COG4886 Leucine-rich repeat (L 98.9 9.9E-10 2.2E-14 127.3 7.5 154 493-650 141-294 (394)
32 COG4886 Leucine-rich repeat (L 98.9 1.2E-09 2.6E-14 126.6 7.2 197 519-721 97-294 (394)
33 KOG1259 Nischarin, modulator o 98.9 3.9E-10 8.5E-15 114.3 1.6 108 605-716 279-386 (490)
34 COG2909 MalT ATP-dependent tra 98.9 1.2E-08 2.7E-13 118.7 12.0 275 3-299 33-342 (894)
35 PRK15386 type III secretion pr 98.8 8.6E-09 1.9E-13 113.6 9.1 163 680-855 51-217 (426)
36 KOG0532 Leucine-rich repeat (L 98.8 1.6E-10 3.5E-15 127.3 -5.0 171 396-599 76-247 (722)
37 KOG3207 Beta-tubulin folding c 98.8 1E-09 2.2E-14 117.6 0.8 202 493-694 122-339 (505)
38 KOG1259 Nischarin, modulator o 98.8 3.6E-09 7.8E-14 107.5 4.0 134 490-627 282-416 (490)
39 KOG1909 Ran GTPase-activating 98.8 6.2E-10 1.3E-14 116.2 -1.7 225 491-716 29-310 (382)
40 TIGR00635 ruvB Holliday juncti 98.8 2.8E-08 6E-13 110.6 11.0 248 6-277 29-289 (305)
41 PF14580 LRR_9: Leucine-rich r 98.7 1.1E-08 2.3E-13 101.0 4.3 125 562-712 18-148 (175)
42 PRK00080 ruvB Holliday junctio 98.7 6.4E-08 1.4E-12 108.3 11.0 250 5-277 49-310 (328)
43 COG2256 MGS1 ATPase related to 98.7 1.9E-07 4.1E-12 100.2 13.6 150 5-183 46-206 (436)
44 PRK06893 DNA replication initi 98.7 1.6E-07 3.4E-12 99.0 12.6 148 7-187 39-201 (229)
45 PRK00411 cdc6 cell division co 98.7 1.3E-06 2.9E-11 101.1 20.7 256 6-277 54-358 (394)
46 KOG1909 Ran GTPase-activating 98.6 1.2E-08 2.6E-13 106.8 2.2 241 510-780 25-311 (382)
47 PF14580 LRR_9: Leucine-rich r 98.6 3.3E-08 7.2E-13 97.6 5.1 123 608-734 17-149 (175)
48 COG3903 Predicted ATPase [Gene 98.6 2E-08 4.4E-13 108.4 3.1 282 5-298 12-317 (414)
49 TIGR02928 orc1/cdc6 family rep 98.6 1.3E-06 2.7E-11 100.2 17.6 257 6-277 39-350 (365)
50 PF01637 Arch_ATPase: Archaeal 98.6 1.7E-07 3.7E-12 100.0 9.1 179 7-188 20-233 (234)
51 PRK15386 type III secretion pr 98.5 3.7E-07 7.9E-12 100.9 10.5 131 632-776 51-186 (426)
52 PF13173 AAA_14: AAA domain 98.5 8E-07 1.7E-11 84.4 11.3 121 7-149 2-126 (128)
53 TIGR03420 DnaA_homol_Hda DnaA 98.4 1.9E-06 4.2E-11 91.3 12.8 152 6-190 37-202 (226)
54 PLN03150 hypothetical protein; 98.4 5.4E-07 1.2E-11 109.3 8.5 105 494-598 420-527 (623)
55 KOG0531 Protein phosphatase 1, 98.4 7.5E-08 1.6E-12 111.6 -0.2 127 494-625 74-201 (414)
56 PLN03150 hypothetical protein; 98.3 5.5E-07 1.2E-11 109.2 6.0 92 516-607 419-511 (623)
57 PRK13342 recombination factor 98.3 1.2E-05 2.6E-10 92.9 16.2 155 5-188 34-195 (413)
58 PF13401 AAA_22: AAA domain; P 98.3 2.2E-06 4.9E-11 82.0 7.5 113 6-125 3-125 (131)
59 KOG0531 Protein phosphatase 1, 98.3 2.5E-07 5.3E-12 107.4 0.9 143 495-644 121-266 (414)
60 PRK08727 hypothetical protein; 98.2 2.1E-05 4.5E-10 83.2 13.7 143 8-183 42-198 (233)
61 PF13855 LRR_8: Leucine rich r 98.2 1.7E-06 3.7E-11 69.9 3.9 59 658-716 1-61 (61)
62 TIGR01242 26Sp45 26S proteasom 98.1 1.7E-05 3.6E-10 90.3 12.4 151 7-183 156-328 (364)
63 PRK09087 hypothetical protein; 98.1 3.2E-05 7E-10 80.9 13.2 137 7-187 44-193 (226)
64 PF13855 LRR_8: Leucine rich r 98.1 2E-06 4.2E-11 69.6 3.2 58 395-459 1-60 (61)
65 PRK08084 DNA replication initi 98.1 3.9E-05 8.5E-10 81.2 13.9 147 6-185 44-205 (235)
66 TIGR00678 holB DNA polymerase 98.1 4.7E-05 1E-09 77.9 13.2 150 7-185 14-187 (188)
67 KOG2120 SCF ubiquitin ligase, 98.1 1.3E-07 2.8E-12 96.5 -5.9 179 492-691 185-373 (419)
68 PRK05642 DNA replication initi 98.0 5.1E-05 1.1E-09 80.2 13.2 147 8-185 46-204 (234)
69 PF00308 Bac_DnaA: Bacterial d 98.0 4.5E-05 9.8E-10 79.5 12.3 152 7-182 34-201 (219)
70 PRK14087 dnaA chromosomal repl 98.0 0.00011 2.5E-09 85.0 16.8 163 8-190 142-320 (450)
71 PF05496 RuvB_N: Holliday junc 98.0 8E-05 1.7E-09 75.3 12.2 150 5-186 48-218 (233)
72 KOG2028 ATPase related to the 98.0 6.4E-05 1.4E-09 79.3 11.5 129 4-157 159-293 (554)
73 PRK14963 DNA polymerase III su 98.0 8.8E-05 1.9E-09 86.8 14.1 165 7-184 36-212 (504)
74 PRK09376 rho transcription ter 97.9 1.4E-05 3.1E-10 87.5 6.9 91 8-101 170-269 (416)
75 COG3899 Predicted ATPase [Gene 97.9 9.6E-05 2.1E-09 92.2 15.0 223 87-323 153-406 (849)
76 KOG2120 SCF ubiquitin ligase, 97.9 1.9E-07 4.1E-12 95.4 -7.1 156 540-716 186-350 (419)
77 PRK14961 DNA polymerase III su 97.9 0.00032 6.9E-09 79.6 17.4 94 88-184 119-215 (363)
78 PRK08903 DnaA regulatory inact 97.9 0.00011 2.4E-09 77.7 12.7 151 6-193 41-203 (227)
79 PRK05564 DNA polymerase III su 97.9 0.00016 3.6E-09 80.4 14.6 156 7-189 26-190 (313)
80 PLN03025 replication factor C 97.9 0.0001 2.2E-09 82.2 12.8 158 6-183 33-194 (319)
81 PRK12402 replication factor C 97.9 0.0002 4.4E-09 81.0 15.5 172 6-185 35-222 (337)
82 PRK13341 recombination factor 97.9 0.00013 2.8E-09 88.7 14.3 149 5-183 50-211 (725)
83 PRK14949 DNA polymerase III su 97.9 0.00026 5.6E-09 85.7 16.2 101 86-189 117-221 (944)
84 cd00009 AAA The AAA+ (ATPases 97.9 5.6E-05 1.2E-09 73.9 8.9 106 6-127 18-131 (151)
85 KOG1859 Leucine-rich repeat pr 97.8 2.4E-07 5.1E-12 105.3 -9.3 178 508-694 102-292 (1096)
86 cd01128 rho_factor Transcripti 97.8 3.7E-05 7.9E-10 81.2 7.1 93 6-101 15-116 (249)
87 PRK06645 DNA polymerase III su 97.8 0.00042 9E-09 80.8 16.3 95 87-184 127-224 (507)
88 PRK07003 DNA polymerase III su 97.8 0.00028 6.1E-09 83.6 14.8 99 88-189 119-221 (830)
89 PRK14960 DNA polymerase III su 97.8 0.00046 1E-08 81.0 16.5 95 87-184 117-214 (702)
90 PRK00149 dnaA chromosomal repl 97.8 0.00048 1E-08 80.8 16.9 156 7-184 148-317 (450)
91 PRK03992 proteasome-activating 97.8 0.00025 5.3E-09 81.1 13.9 149 7-182 165-336 (389)
92 PRK14088 dnaA chromosomal repl 97.8 0.00035 7.5E-09 81.0 15.0 156 8-184 131-300 (440)
93 PRK12422 chromosomal replicati 97.8 0.0012 2.6E-08 76.4 19.2 153 8-182 142-306 (445)
94 TIGR02881 spore_V_K stage V sp 97.8 0.0004 8.7E-09 75.0 14.3 135 4-159 39-192 (261)
95 PRK14957 DNA polymerase III su 97.8 0.00062 1.3E-08 79.9 16.7 100 87-189 118-221 (546)
96 KOG1859 Leucine-rich repeat pr 97.8 2E-06 4.4E-11 98.0 -3.6 122 611-736 165-290 (1096)
97 KOG2982 Uncharacterized conser 97.8 7.9E-06 1.7E-10 83.8 0.9 65 657-721 198-266 (418)
98 PRK07471 DNA polymerase III su 97.8 0.0013 2.9E-08 73.8 18.7 96 87-189 140-238 (365)
99 PRK14962 DNA polymerase III su 97.7 0.00061 1.3E-08 79.2 16.2 102 87-191 116-221 (472)
100 PRK07940 DNA polymerase III su 97.7 0.00038 8.2E-09 78.8 14.1 94 88-189 117-213 (394)
101 PRK12323 DNA polymerase III su 97.7 0.00049 1.1E-08 80.6 14.9 100 87-189 123-226 (700)
102 PRK06620 hypothetical protein; 97.7 0.00034 7.4E-09 72.6 12.3 129 8-182 45-182 (214)
103 PRK04195 replication factor C 97.7 0.0002 4.3E-09 84.6 11.7 152 7-185 39-198 (482)
104 TIGR00767 rho transcription te 97.7 9.4E-05 2E-09 81.7 8.2 91 8-101 169-268 (415)
105 PTZ00112 origin recognition co 97.7 0.00026 5.6E-09 84.3 12.2 182 7-193 781-986 (1164)
106 PRK14956 DNA polymerase III su 97.7 0.00067 1.5E-08 77.4 15.3 101 86-189 119-223 (484)
107 TIGR00362 DnaA chromosomal rep 97.7 0.00044 9.5E-09 80.0 14.1 156 8-185 137-306 (405)
108 PF14516 AAA_35: AAA-like doma 97.7 0.0031 6.7E-08 70.5 20.2 183 7-196 31-246 (331)
109 PRK00440 rfc replication facto 97.7 0.00072 1.6E-08 75.9 15.3 160 6-185 37-199 (319)
110 PF12799 LRR_4: Leucine Rich r 97.6 7.6E-05 1.7E-09 55.1 4.2 39 659-697 2-40 (44)
111 PRK08691 DNA polymerase III su 97.6 0.00079 1.7E-08 79.9 14.6 95 87-184 118-215 (709)
112 PTZ00361 26 proteosome regulat 97.6 0.00046 1E-08 78.9 12.3 131 7-160 217-369 (438)
113 PRK14955 DNA polymerase III su 97.6 0.00066 1.4E-08 78.0 13.6 95 87-184 126-223 (397)
114 TIGR02397 dnaX_nterm DNA polym 97.6 0.0016 3.6E-08 74.2 16.9 99 88-189 117-218 (355)
115 PRK09112 DNA polymerase III su 97.6 0.00089 1.9E-08 74.8 14.0 98 87-189 140-240 (351)
116 TIGR03689 pup_AAA proteasome A 97.6 0.00092 2E-08 77.6 14.2 135 7-158 216-378 (512)
117 KOG4579 Leucine-rich repeat (L 97.6 1E-05 2.2E-10 73.6 -1.5 105 612-717 29-136 (177)
118 PRK05707 DNA polymerase III su 97.6 0.0016 3.5E-08 72.1 15.4 94 88-189 107-203 (328)
119 PTZ00454 26S protease regulato 97.5 0.00085 1.8E-08 76.2 13.4 152 6-183 178-351 (398)
120 PRK14964 DNA polymerase III su 97.5 0.0015 3.2E-08 75.7 15.4 154 7-184 35-212 (491)
121 KOG2982 Uncharacterized conser 97.5 4E-05 8.8E-10 78.8 2.4 64 679-742 197-266 (418)
122 COG0593 DnaA ATPase involved i 97.5 0.0023 4.9E-08 71.6 16.2 183 7-210 113-315 (408)
123 PRK08116 hypothetical protein; 97.5 0.00032 7E-09 75.5 9.4 101 8-125 115-220 (268)
124 PRK07994 DNA polymerase III su 97.5 0.0013 2.9E-08 78.4 15.1 101 86-189 117-221 (647)
125 CHL00181 cbbX CbbX; Provisiona 97.5 0.0021 4.6E-08 69.9 15.4 133 8-160 60-211 (287)
126 PF00004 AAA: ATPase family as 97.5 0.00067 1.5E-08 64.8 10.3 23 10-32 1-23 (132)
127 TIGR02880 cbbX_cfxQ probable R 97.5 0.00085 1.9E-08 73.1 12.1 130 9-158 60-208 (284)
128 PRK14086 dnaA chromosomal repl 97.5 0.0015 3.2E-08 76.8 14.5 150 9-182 316-481 (617)
129 TIGR02903 spore_lon_C ATP-depe 97.5 0.00081 1.7E-08 81.2 12.7 112 78-192 282-398 (615)
130 KOG4341 F-box protein containi 97.5 4.6E-06 1E-10 89.7 -5.7 108 631-738 318-439 (483)
131 PHA02544 44 clamp loader, smal 97.4 0.0017 3.8E-08 72.6 14.3 125 7-156 43-171 (316)
132 COG1222 RPT1 ATP-dependent 26S 97.4 0.0017 3.7E-08 69.3 12.6 177 7-210 185-394 (406)
133 PRK14970 DNA polymerase III su 97.4 0.0017 3.7E-08 74.2 14.0 155 7-184 39-204 (367)
134 PRK14951 DNA polymerase III su 97.4 0.0024 5.1E-08 76.1 15.2 94 88-184 124-220 (618)
135 PRK14959 DNA polymerase III su 97.4 0.003 6.5E-08 74.7 15.6 103 87-192 118-224 (624)
136 PRK05896 DNA polymerase III su 97.4 0.002 4.4E-08 75.7 13.9 98 89-189 120-221 (605)
137 PRK14958 DNA polymerase III su 97.4 0.0029 6.3E-08 74.4 15.1 154 7-184 38-215 (509)
138 PF12799 LRR_4: Leucine Rich r 97.4 0.00024 5.3E-09 52.5 3.9 37 681-717 1-37 (44)
139 PLN00020 ribulose bisphosphate 97.4 0.0034 7.5E-08 68.3 14.2 154 5-184 146-333 (413)
140 KOG4341 F-box protein containi 97.3 1.5E-05 3.3E-10 85.8 -3.8 218 564-781 139-386 (483)
141 PRK14969 DNA polymerase III su 97.3 0.0025 5.3E-08 75.6 13.9 100 87-189 118-221 (527)
142 COG1474 CDC6 Cdc6-related prot 97.3 0.0039 8.4E-08 70.0 14.7 176 9-189 44-238 (366)
143 PRK14954 DNA polymerase III su 97.3 0.0046 1E-07 74.0 15.7 94 88-184 127-223 (620)
144 PRK08181 transposase; Validate 97.3 0.00089 1.9E-08 71.6 8.8 36 7-42 106-141 (269)
145 KOG3665 ZYG-1-like serine/thre 97.3 7.4E-05 1.6E-09 90.4 0.4 105 608-713 171-284 (699)
146 COG1373 Predicted ATPase (AAA+ 97.3 0.003 6.5E-08 72.2 13.4 120 9-154 39-163 (398)
147 PRK14950 DNA polymerase III su 97.2 0.0044 9.5E-08 74.9 15.3 169 7-187 38-219 (585)
148 smart00382 AAA ATPases associa 97.2 0.00068 1.5E-08 65.5 7.0 35 8-42 3-37 (148)
149 CHL00176 ftsH cell division pr 97.2 0.0042 9.1E-08 74.8 14.9 151 7-182 216-387 (638)
150 KOG4579 Leucine-rich repeat (L 97.2 2.8E-05 6E-10 70.8 -2.8 112 515-629 27-142 (177)
151 PRK07133 DNA polymerase III su 97.2 0.0045 9.8E-08 74.4 14.8 100 87-189 117-220 (725)
152 KOG0741 AAA+-type ATPase [Post 97.2 0.0044 9.6E-08 69.1 13.2 133 4-157 535-685 (744)
153 cd01133 F1-ATPase_beta F1 ATP 97.2 0.0014 3.1E-08 69.4 9.2 92 8-102 70-177 (274)
154 PF01695 IstB_IS21: IstB-like 97.2 0.00075 1.6E-08 67.8 6.7 37 6-42 46-82 (178)
155 PRK06305 DNA polymerase III su 97.2 0.0053 1.1E-07 71.4 14.6 99 87-188 120-222 (451)
156 PRK14952 DNA polymerase III su 97.2 0.0082 1.8E-07 71.4 16.3 101 87-190 117-221 (584)
157 PRK08451 DNA polymerase III su 97.2 0.0059 1.3E-07 71.4 14.8 95 87-184 116-213 (535)
158 PRK14953 DNA polymerase III su 97.2 0.0077 1.7E-07 70.5 15.8 96 87-185 118-216 (486)
159 KOG0989 Replication factor C, 97.1 0.0035 7.5E-08 65.7 11.0 169 5-190 55-232 (346)
160 COG5238 RNA1 Ran GTPase-activa 97.1 0.00018 4E-09 73.1 1.6 86 511-597 26-131 (388)
161 PRK09183 transposase/IS protei 97.1 0.0018 3.8E-08 69.5 9.2 35 7-41 102-136 (259)
162 KOG3665 ZYG-1-like serine/thre 97.1 8.8E-05 1.9E-09 89.8 -0.8 57 538-595 147-204 (699)
163 PRK06526 transposase; Provisio 97.1 0.00068 1.5E-08 72.1 5.9 34 7-40 98-131 (254)
164 PRK07764 DNA polymerase III su 97.1 0.011 2.3E-07 73.3 16.5 95 87-184 119-216 (824)
165 KOG1644 U2-associated snRNP A' 97.1 0.00079 1.7E-08 66.0 5.2 102 587-713 43-149 (233)
166 TIGR01241 FtsH_fam ATP-depende 97.1 0.0069 1.5E-07 72.0 14.4 151 7-182 88-259 (495)
167 PRK09111 DNA polymerase III su 97.0 0.0062 1.3E-07 72.8 13.7 96 88-186 132-230 (598)
168 PRK14948 DNA polymerase III su 97.0 0.013 2.8E-07 70.7 16.4 167 8-186 39-219 (620)
169 PRK12377 putative replication 97.0 0.0026 5.6E-08 67.2 9.3 36 7-42 101-136 (248)
170 KOG0744 AAA+-type ATPase [Post 97.0 0.0037 8E-08 65.6 10.0 136 7-157 177-339 (423)
171 PRK06871 DNA polymerase III su 97.0 0.012 2.7E-07 64.6 14.5 91 87-185 106-199 (325)
172 cd01131 PilT Pilus retraction 97.0 0.003 6.4E-08 65.0 8.8 113 8-131 2-114 (198)
173 PRK06921 hypothetical protein; 97.0 0.0034 7.4E-08 67.5 9.5 37 6-42 116-153 (266)
174 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0049 1.1E-07 71.8 11.3 153 7-183 259-429 (489)
175 PF07728 AAA_5: AAA domain (dy 96.9 0.0019 4.2E-08 62.3 6.8 22 10-31 2-23 (139)
176 PF13191 AAA_16: AAA ATPase do 96.9 0.00096 2.1E-08 68.1 4.8 32 3-34 20-51 (185)
177 PRK10536 hypothetical protein; 96.9 0.0042 9.1E-08 64.8 9.4 117 8-127 75-214 (262)
178 PRK14971 DNA polymerase III su 96.9 0.016 3.4E-07 69.9 15.3 94 88-184 121-217 (614)
179 PRK08769 DNA polymerase III su 96.9 0.014 3E-07 64.1 13.5 94 88-190 113-209 (319)
180 PRK06647 DNA polymerase III su 96.9 0.024 5.3E-07 67.5 16.5 95 87-184 118-215 (563)
181 KOG0733 Nuclear AAA ATPase (VC 96.9 0.005 1.1E-07 70.1 9.9 145 7-173 223-390 (802)
182 PF04665 Pox_A32: Poxvirus A32 96.9 0.015 3.3E-07 60.5 12.9 34 9-42 15-48 (241)
183 PRK07952 DNA replication prote 96.8 0.0052 1.1E-07 64.8 9.6 36 7-42 99-134 (244)
184 TIGR01243 CDC48 AAA family ATP 96.8 0.01 2.2E-07 74.2 13.8 151 7-183 487-657 (733)
185 KOG1644 U2-associated snRNP A' 96.8 0.0012 2.6E-08 64.7 4.3 80 516-597 43-124 (233)
186 PF02562 PhoH: PhoH-like prote 96.8 0.0036 7.9E-08 63.5 7.9 118 7-127 19-157 (205)
187 COG3267 ExeA Type II secretory 96.8 0.044 9.6E-07 56.4 15.1 179 5-190 49-246 (269)
188 COG5238 RNA1 Ran GTPase-activa 96.7 0.00062 1.3E-08 69.4 1.6 88 491-579 29-136 (388)
189 PRK06090 DNA polymerase III su 96.7 0.063 1.4E-06 58.9 17.2 107 89-209 109-218 (319)
190 TIGR02640 gas_vesic_GvpN gas v 96.7 0.021 4.5E-07 61.7 13.3 24 9-32 23-46 (262)
191 PF05673 DUF815: Protein of un 96.7 0.065 1.4E-06 55.5 15.9 96 7-131 52-156 (249)
192 KOG0735 AAA+-type ATPase [Post 96.7 0.017 3.6E-07 67.1 12.8 163 8-190 432-617 (952)
193 PRK06835 DNA replication prote 96.7 0.0068 1.5E-07 67.0 9.5 35 8-42 184-218 (329)
194 PRK07993 DNA polymerase III su 96.7 0.021 4.6E-07 63.5 13.4 92 87-186 107-201 (334)
195 PRK08118 topology modulation p 96.7 0.0038 8.3E-08 62.1 6.7 34 8-41 2-38 (167)
196 KOG2227 Pre-initiation complex 96.7 0.017 3.8E-07 64.1 12.1 181 6-191 174-374 (529)
197 PTZ00202 tuzin; Provisional 96.7 0.02 4.3E-07 63.8 12.5 140 6-157 285-433 (550)
198 cd00561 CobA_CobO_BtuR ATP:cor 96.7 0.016 3.4E-07 56.4 10.6 117 8-127 3-139 (159)
199 PRK07399 DNA polymerase III su 96.6 0.024 5.2E-07 62.5 13.3 95 87-188 123-220 (314)
200 PRK08058 DNA polymerase III su 96.6 0.019 4.2E-07 64.1 12.7 69 88-157 110-181 (329)
201 PHA00729 NTP-binding motif con 96.6 0.0071 1.5E-07 62.2 8.3 28 5-32 15-42 (226)
202 cd01120 RecA-like_NTPases RecA 96.6 0.0055 1.2E-07 60.9 7.5 34 9-42 1-34 (165)
203 PF05621 TniB: Bacterial TniB 96.5 0.031 6.7E-07 59.7 12.8 179 4-187 58-259 (302)
204 PRK05563 DNA polymerase III su 96.5 0.055 1.2E-06 64.8 16.6 95 87-184 118-215 (559)
205 PRK12608 transcription termina 96.5 0.0079 1.7E-07 66.5 8.6 91 8-101 134-233 (380)
206 KOG2543 Origin recognition com 96.5 0.052 1.1E-06 58.9 14.3 144 7-158 30-193 (438)
207 PRK05541 adenylylsulfate kinas 96.5 0.017 3.6E-07 58.4 10.5 41 2-42 2-42 (176)
208 COG1484 DnaC DNA replication p 96.5 0.0093 2E-07 63.6 8.9 36 7-42 105-140 (254)
209 PRK06964 DNA polymerase III su 96.5 0.07 1.5E-06 59.2 15.6 90 89-189 133-225 (342)
210 PF13207 AAA_17: AAA domain; P 96.5 0.0024 5.1E-08 60.0 3.5 23 9-31 1-23 (121)
211 TIGR02639 ClpA ATP-dependent C 96.5 0.014 3.1E-07 72.6 11.4 128 8-158 204-358 (731)
212 PRK14965 DNA polymerase III su 96.5 0.031 6.8E-07 67.2 13.9 99 88-189 119-221 (576)
213 PRK07261 topology modulation p 96.5 0.01 2.3E-07 59.3 8.3 23 9-31 2-24 (171)
214 PRK10733 hflB ATP-dependent me 96.4 0.02 4.4E-07 69.8 12.3 131 8-160 186-337 (644)
215 TIGR01243 CDC48 AAA family ATP 96.4 0.035 7.6E-07 69.4 14.8 151 7-183 212-381 (733)
216 PRK04132 replication factor C 96.4 0.032 6.9E-07 68.8 13.5 154 15-189 574-732 (846)
217 COG4608 AppF ABC-type oligopep 96.4 0.012 2.6E-07 61.4 8.5 147 7-155 39-199 (268)
218 PF00448 SRP54: SRP54-type pro 96.4 0.009 1.9E-07 61.0 7.5 58 7-68 1-58 (196)
219 PRK10865 protein disaggregatio 96.4 0.038 8.3E-07 69.7 14.5 93 8-110 599-694 (857)
220 PRK08939 primosomal protein Dn 96.4 0.015 3.1E-07 63.9 9.5 37 6-42 155-191 (306)
221 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.4 0.027 5.8E-07 54.6 10.4 111 8-142 27-140 (144)
222 TIGR02639 ClpA ATP-dependent C 96.4 0.06 1.3E-06 67.1 16.1 92 7-111 484-578 (731)
223 KOG0743 AAA+-type ATPase [Post 96.3 0.054 1.2E-06 60.4 13.5 152 10-196 238-417 (457)
224 COG1618 Predicted nucleotide k 96.3 0.0044 9.5E-08 58.7 4.4 40 7-46 5-46 (179)
225 PRK04296 thymidine kinase; Pro 96.3 0.01 2.2E-07 60.5 7.3 110 8-127 3-117 (190)
226 COG2255 RuvB Holliday junction 96.3 0.018 3.8E-07 59.9 8.5 154 119-280 155-315 (332)
227 PRK08699 DNA polymerase III su 96.2 0.071 1.5E-06 59.1 14.0 66 91-157 116-184 (325)
228 COG1223 Predicted ATPase (AAA+ 96.2 0.038 8.3E-07 56.4 10.5 149 7-182 151-318 (368)
229 KOG0991 Replication factor C, 96.2 0.073 1.6E-06 53.5 11.9 29 4-32 45-73 (333)
230 cd03222 ABC_RNaseL_inhibitor T 96.1 0.036 7.7E-07 55.6 9.9 114 7-143 25-146 (177)
231 cd03214 ABC_Iron-Siderophores_ 96.1 0.033 7.3E-07 56.3 10.0 127 8-142 26-171 (180)
232 TIGR03345 VI_ClpV1 type VI sec 96.1 0.063 1.4E-06 67.6 14.3 130 8-158 209-363 (852)
233 PRK11331 5-methylcytosine-spec 96.1 0.012 2.7E-07 66.5 7.1 36 7-42 194-231 (459)
234 KOG0730 AAA+-type ATPase [Post 96.1 0.052 1.1E-06 63.0 12.0 130 5-160 466-617 (693)
235 PRK11889 flhF flagellar biosyn 96.0 0.036 7.7E-07 61.5 10.1 37 6-42 240-276 (436)
236 KOG2739 Leucine-rich acidic nu 96.0 0.003 6.6E-08 64.9 1.8 86 512-599 40-129 (260)
237 COG1121 ZnuC ABC-type Mn/Zn tr 96.0 0.024 5.3E-07 59.2 8.3 52 79-132 148-205 (254)
238 cd03216 ABC_Carb_Monos_I This 96.0 0.03 6.5E-07 55.6 8.7 124 8-142 27-155 (163)
239 KOG0651 26S proteasome regulat 96.0 0.041 9E-07 57.8 9.7 127 6-154 165-312 (388)
240 KOG0733 Nuclear AAA ATPase (VC 95.9 0.1 2.2E-06 60.0 13.3 129 8-159 546-693 (802)
241 cd03223 ABCD_peroxisomal_ALDP 95.9 0.026 5.7E-07 56.2 8.2 125 8-142 28-160 (166)
242 TIGR03345 VI_ClpV1 type VI sec 95.9 0.028 6.2E-07 70.6 10.1 27 7-33 596-622 (852)
243 TIGR00602 rad24 checkpoint pro 95.9 0.035 7.6E-07 66.6 10.3 27 6-32 109-135 (637)
244 KOG0728 26S proteasome regulat 95.9 0.19 4.1E-06 51.0 13.7 130 6-158 180-331 (404)
245 TIGR03346 chaperone_ClpB ATP-d 95.9 0.068 1.5E-06 67.8 13.5 94 7-110 595-691 (852)
246 PF13671 AAA_33: AAA domain; P 95.9 0.052 1.1E-06 52.5 9.9 24 9-32 1-24 (143)
247 cd00267 ABC_ATPase ABC (ATP-bi 95.9 0.031 6.7E-07 55.2 8.2 122 8-143 26-154 (157)
248 PRK14722 flhF flagellar biosyn 95.8 0.082 1.8E-06 59.2 12.2 37 6-42 136-174 (374)
249 COG1875 NYN ribonuclease and A 95.8 0.044 9.6E-07 59.0 9.5 118 4-127 242-389 (436)
250 PRK11034 clpA ATP-dependent Cl 95.8 0.059 1.3E-06 66.4 12.0 91 7-110 488-581 (758)
251 PF00406 ADK: Adenylate kinase 95.8 0.029 6.3E-07 54.9 7.8 115 12-132 1-120 (151)
252 TIGR01420 pilT_fam pilus retra 95.8 0.034 7.3E-07 62.6 9.2 111 7-129 122-233 (343)
253 COG2884 FtsE Predicted ATPase 95.8 0.075 1.6E-06 52.1 10.1 53 79-133 146-204 (223)
254 cd01394 radB RadB. The archaea 95.8 0.034 7.3E-07 58.4 8.6 37 6-42 18-54 (218)
255 cd01393 recA_like RecA is a b 95.8 0.045 9.8E-07 57.8 9.6 37 6-42 18-60 (226)
256 COG0464 SpoVK ATPases of the A 95.8 0.036 7.8E-07 66.1 9.8 136 5-162 274-427 (494)
257 COG0542 clpA ATP-binding subun 95.8 0.035 7.5E-07 67.0 9.3 98 5-112 519-619 (786)
258 CHL00095 clpC Clp protease ATP 95.7 0.04 8.7E-07 69.6 10.4 127 9-157 202-353 (821)
259 cd00544 CobU Adenosylcobinamid 95.7 0.077 1.7E-06 52.7 10.2 80 9-97 1-82 (169)
260 cd01121 Sms Sms (bacterial rad 95.7 0.043 9.4E-07 61.8 9.5 36 7-42 82-117 (372)
261 cd03229 ABC_Class3 This class 95.7 0.034 7.4E-07 56.2 7.9 34 8-42 27-60 (178)
262 PF13177 DNA_pol3_delta2: DNA 95.7 0.085 1.9E-06 52.2 10.4 120 7-145 19-161 (162)
263 KOG2123 Uncharacterized conser 95.7 0.0018 3.9E-08 66.4 -1.5 84 562-648 18-103 (388)
264 cd03230 ABC_DR_subfamily_A Thi 95.6 0.042 9E-07 55.2 8.3 124 8-142 27-168 (173)
265 PRK06762 hypothetical protein; 95.6 0.037 8.1E-07 55.2 7.8 25 7-31 2-26 (166)
266 KOG1947 Leucine rich repeat pr 95.6 0.0012 2.6E-08 79.0 -3.9 83 631-713 241-330 (482)
267 cd03247 ABCC_cytochrome_bd The 95.6 0.081 1.8E-06 53.4 10.1 34 8-42 29-62 (178)
268 COG0572 Udk Uridine kinase [Nu 95.6 0.017 3.6E-07 58.7 4.9 30 5-34 6-35 (218)
269 TIGR01359 UMP_CMP_kin_fam UMP- 95.5 0.059 1.3E-06 54.7 9.1 23 9-31 1-23 (183)
270 PF07726 AAA_3: ATPase family 95.5 0.0091 2E-07 55.0 2.7 29 10-38 2-30 (131)
271 CHL00095 clpC Clp protease ATP 95.5 0.058 1.3E-06 68.1 10.8 95 7-111 539-636 (821)
272 TIGR00763 lon ATP-dependent pr 95.5 0.079 1.7E-06 66.5 11.6 29 7-35 347-375 (775)
273 PRK11034 clpA ATP-dependent Cl 95.5 0.071 1.5E-06 65.7 10.9 131 9-158 209-362 (758)
274 PF13238 AAA_18: AAA domain; P 95.4 0.012 2.6E-07 55.8 3.3 22 10-31 1-22 (129)
275 cd03238 ABC_UvrA The excision 95.4 0.11 2.3E-06 52.1 10.1 22 8-29 22-43 (176)
276 PRK10865 protein disaggregatio 95.4 0.096 2.1E-06 66.2 12.1 129 8-158 200-354 (857)
277 TIGR00708 cobA cob(I)alamin ad 95.4 0.13 2.9E-06 50.6 10.5 119 6-126 4-140 (173)
278 PF00485 PRK: Phosphoribulokin 95.4 0.013 2.9E-07 60.1 3.7 26 9-34 1-26 (194)
279 KOG2035 Replication factor C, 95.4 0.48 1E-05 49.3 14.6 193 4-210 31-260 (351)
280 cd03283 ABC_MutS-like MutS-lik 95.4 0.089 1.9E-06 54.0 9.7 23 8-30 26-48 (199)
281 cd03115 SRP The signal recogni 95.4 0.13 2.8E-06 51.7 10.7 33 9-41 2-34 (173)
282 cd03246 ABCC_Protease_Secretio 95.3 0.1 2.2E-06 52.4 9.9 124 8-142 29-168 (173)
283 KOG2739 Leucine-rich acidic nu 95.3 0.0075 1.6E-07 62.0 1.6 14 678-691 140-153 (260)
284 PF10443 RNA12: RNA12 protein; 95.3 0.71 1.5E-05 51.9 16.9 104 88-195 148-284 (431)
285 KOG0731 AAA+-type ATPase conta 95.3 0.2 4.2E-06 60.3 13.4 154 7-185 344-520 (774)
286 COG1136 SalX ABC-type antimicr 95.3 0.098 2.1E-06 53.9 9.6 60 79-143 151-216 (226)
287 cd01135 V_A-ATPase_B V/A-type 95.3 0.072 1.6E-06 56.6 8.8 91 8-102 70-180 (276)
288 PRK08356 hypothetical protein; 95.3 0.096 2.1E-06 53.8 9.6 21 8-28 6-26 (195)
289 PF01583 APS_kinase: Adenylyls 95.3 0.028 6.1E-07 54.4 5.2 36 7-42 2-37 (156)
290 PRK14974 cell division protein 95.3 0.15 3.2E-06 56.6 11.5 30 5-34 138-167 (336)
291 TIGR02237 recomb_radB DNA repa 95.3 0.053 1.2E-06 56.4 7.8 36 7-42 12-47 (209)
292 PRK09280 F0F1 ATP synthase sub 95.2 0.052 1.1E-06 62.1 8.0 91 8-101 145-251 (463)
293 PRK12723 flagellar biosynthesi 95.2 0.1 2.3E-06 58.9 10.4 27 6-32 173-199 (388)
294 COG1124 DppF ABC-type dipeptid 95.2 0.1 2.2E-06 53.5 9.1 52 80-133 151-209 (252)
295 cd03233 ABC_PDR_domain1 The pl 95.2 0.1 2.3E-06 53.8 9.6 25 8-32 34-58 (202)
296 TIGR03346 chaperone_ClpB ATP-d 95.2 0.11 2.3E-06 66.0 11.6 133 8-158 195-349 (852)
297 PRK12724 flagellar biosynthesi 95.2 0.077 1.7E-06 59.8 9.0 25 7-31 223-247 (432)
298 PTZ00301 uridine kinase; Provi 95.2 0.018 3.9E-07 59.4 3.8 29 7-35 3-31 (210)
299 COG0488 Uup ATPase components 95.2 0.072 1.6E-06 62.8 9.2 54 83-144 452-511 (530)
300 PRK06696 uridine kinase; Valid 95.1 0.027 5.9E-07 59.2 5.2 31 4-34 19-49 (223)
301 PRK05480 uridine/cytidine kina 95.1 0.02 4.3E-07 59.6 4.2 28 4-31 3-30 (209)
302 PRK09361 radB DNA repair and r 95.1 0.057 1.2E-06 56.9 7.7 36 7-42 23-58 (225)
303 TIGR03574 selen_PSTK L-seryl-t 95.1 0.058 1.3E-06 57.9 7.8 26 9-34 1-26 (249)
304 cd03237 ABC_RNaseL_inhibitor_d 95.1 0.078 1.7E-06 56.6 8.6 24 8-31 26-49 (246)
305 TIGR02858 spore_III_AA stage I 95.1 0.083 1.8E-06 56.7 8.8 120 5-131 109-234 (270)
306 cd03228 ABCC_MRP_Like The MRP 95.1 0.22 4.7E-06 49.9 11.4 116 8-131 29-160 (171)
307 KOG0734 AAA+-type ATPase conta 95.1 0.11 2.4E-06 58.6 9.6 130 7-159 337-485 (752)
308 COG0563 Adk Adenylate kinase a 95.0 0.069 1.5E-06 53.5 7.4 23 9-31 2-24 (178)
309 TIGR01039 atpD ATP synthase, F 95.0 0.07 1.5E-06 60.8 8.2 92 8-102 144-251 (461)
310 PRK05703 flhF flagellar biosyn 95.0 0.16 3.5E-06 58.6 11.3 36 7-42 221-258 (424)
311 cd03232 ABC_PDR_domain2 The pl 95.0 0.12 2.7E-06 52.8 9.4 23 8-30 34-56 (192)
312 PRK08233 hypothetical protein; 95.0 0.021 4.5E-07 58.0 3.7 26 7-32 3-28 (182)
313 cd02019 NK Nucleoside/nucleoti 95.0 0.022 4.7E-07 47.1 3.1 23 9-31 1-23 (69)
314 PRK04040 adenylate kinase; Pro 95.0 0.028 6E-07 57.1 4.5 26 7-32 2-27 (188)
315 PRK12597 F0F1 ATP synthase sub 95.0 0.07 1.5E-06 61.3 8.2 90 8-101 144-250 (461)
316 COG0466 Lon ATP-dependent Lon 95.0 0.078 1.7E-06 62.3 8.5 138 7-159 350-509 (782)
317 COG1120 FepC ABC-type cobalami 95.0 0.036 7.8E-07 58.2 5.3 61 79-143 147-213 (258)
318 PRK12726 flagellar biosynthesi 94.9 0.2 4.3E-06 55.6 11.1 38 5-42 204-241 (407)
319 PRK07667 uridine kinase; Provi 94.9 0.038 8.2E-07 56.6 5.4 30 5-34 15-44 (193)
320 TIGR00416 sms DNA repair prote 94.9 0.1 2.2E-06 60.8 9.4 36 7-42 94-129 (454)
321 PRK00771 signal recognition pa 94.9 0.06 1.3E-06 61.9 7.3 37 5-41 93-129 (437)
322 PRK06067 flagellar accessory p 94.9 0.11 2.4E-06 55.1 9.0 37 6-42 24-60 (234)
323 cd03240 ABC_Rad50 The catalyti 94.9 0.13 2.8E-06 53.2 9.2 21 8-28 23-43 (204)
324 cd03217 ABC_FeS_Assembly ABC-t 94.9 0.095 2.1E-06 54.1 8.2 23 8-30 27-49 (200)
325 PRK03839 putative kinase; Prov 94.8 0.024 5.2E-07 57.4 3.6 24 9-32 2-25 (180)
326 cd00983 recA RecA is a bacter 94.8 0.046 9.9E-07 59.9 5.9 37 6-42 54-90 (325)
327 COG0470 HolB ATPase involved i 94.8 0.21 4.6E-06 56.0 11.6 118 9-147 26-170 (325)
328 PF00910 RNA_helicase: RNA hel 94.8 0.019 4.1E-07 52.4 2.5 26 10-35 1-26 (107)
329 PF00006 ATP-synt_ab: ATP synt 94.8 0.066 1.4E-06 55.3 6.7 86 8-101 16-118 (215)
330 cd01122 GP4d_helicase GP4d_hel 94.8 0.18 3.9E-06 54.9 10.6 36 7-42 30-66 (271)
331 cd02027 APSK Adenosine 5'-phos 94.8 0.14 3.1E-06 49.9 8.7 24 9-32 1-24 (149)
332 TIGR00235 udk uridine kinase. 94.8 0.03 6.6E-07 58.1 4.3 28 5-32 4-31 (207)
333 TIGR03499 FlhF flagellar biosy 94.8 0.085 1.8E-06 57.5 7.9 29 6-34 193-221 (282)
334 PRK05986 cob(I)alamin adenolsy 94.7 0.098 2.1E-06 52.3 7.5 118 6-126 21-158 (191)
335 KOG2123 Uncharacterized conser 94.7 0.0027 5.8E-08 65.2 -3.5 86 514-603 18-105 (388)
336 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 94.7 0.086 1.9E-06 55.5 7.5 24 8-31 49-72 (224)
337 TIGR02012 tigrfam_recA protein 94.7 0.055 1.2E-06 59.2 6.1 37 6-42 54-90 (321)
338 PF08433 KTI12: Chromatin asso 94.7 0.069 1.5E-06 57.4 6.7 34 8-41 2-35 (270)
339 PRK00625 shikimate kinase; Pro 94.7 0.028 6E-07 56.1 3.5 24 9-32 2-25 (173)
340 PF03969 AFG1_ATPase: AFG1-lik 94.7 0.086 1.9E-06 59.2 7.7 104 6-128 61-169 (362)
341 cd03268 ABC_BcrA_bacitracin_re 94.7 0.13 2.9E-06 53.4 8.8 24 7-30 26-49 (208)
342 cd01125 repA Hexameric Replica 94.6 0.27 5.9E-06 52.3 11.3 23 9-31 3-25 (239)
343 COG1428 Deoxynucleoside kinase 94.6 0.028 6.2E-07 56.2 3.4 26 7-32 4-29 (216)
344 cd04121 Rab40 Rab40 subfamily. 94.6 0.017 3.7E-07 58.8 1.9 23 7-29 6-28 (189)
345 PRK11823 DNA repair protein Ra 94.6 0.16 3.4E-06 59.1 10.0 36 7-42 80-115 (446)
346 COG4618 ArpD ABC-type protease 94.6 0.15 3.3E-06 57.6 9.2 22 8-29 363-384 (580)
347 TIGR03740 galliderm_ABC gallid 94.6 0.15 3.4E-06 53.6 9.2 24 8-31 27-50 (223)
348 COG0055 AtpD F0F1-type ATP syn 94.6 0.068 1.5E-06 57.6 6.2 101 9-112 149-269 (468)
349 cd03235 ABC_Metallic_Cations A 94.6 0.27 5.8E-06 51.3 10.8 24 8-31 26-49 (213)
350 TIGR00959 ffh signal recogniti 94.5 0.26 5.6E-06 56.6 11.4 27 6-32 98-124 (428)
351 PF07724 AAA_2: AAA domain (Cd 94.5 0.06 1.3E-06 53.6 5.6 41 7-48 3-44 (171)
352 TIGR00960 3a0501s02 Type II (G 94.5 0.27 5.8E-06 51.4 10.8 24 8-31 30-53 (216)
353 PTZ00088 adenylate kinase 1; P 94.5 0.062 1.3E-06 56.3 5.8 22 10-31 9-30 (229)
354 PRK10787 DNA-binding ATP-depen 94.5 0.16 3.5E-06 63.1 10.4 137 7-158 349-506 (784)
355 COG5635 Predicted NTPase (NACH 94.5 0.15 3.3E-06 64.5 10.2 195 9-210 224-449 (824)
356 PRK10867 signal recognition pa 94.5 0.096 2.1E-06 60.0 7.7 30 5-34 98-127 (433)
357 TIGR01360 aden_kin_iso1 adenyl 94.5 0.033 7.1E-07 56.9 3.7 26 6-31 2-27 (188)
358 PRK06547 hypothetical protein; 94.5 0.041 8.9E-07 54.9 4.2 27 5-31 13-39 (172)
359 cd03263 ABC_subfamily_A The AB 94.4 0.15 3.2E-06 53.6 8.6 23 8-30 29-51 (220)
360 PRK09354 recA recombinase A; P 94.4 0.066 1.4E-06 59.1 6.0 37 6-42 59-95 (349)
361 KOG1947 Leucine rich repeat pr 94.4 0.0085 1.9E-07 71.6 -0.9 16 470-485 187-202 (482)
362 CHL00206 ycf2 Ycf2; Provisiona 94.4 0.18 3.8E-06 66.1 10.4 26 7-32 1630-1655(2281)
363 PF13604 AAA_30: AAA domain; P 94.4 0.11 2.5E-06 53.1 7.4 105 7-128 18-133 (196)
364 cd03281 ABC_MSH5_euk MutS5 hom 94.4 0.3 6.4E-06 50.8 10.5 23 7-29 29-51 (213)
365 KOG0730 AAA+-type ATPase [Post 94.3 0.16 3.5E-06 59.2 9.0 153 5-179 216-386 (693)
366 PRK12678 transcription termina 94.3 0.073 1.6E-06 61.5 6.2 92 8-102 417-517 (672)
367 PRK06217 hypothetical protein; 94.3 0.17 3.6E-06 51.4 8.4 23 9-31 3-25 (183)
368 PF03205 MobB: Molybdopterin g 94.3 0.061 1.3E-06 51.6 4.8 35 8-42 1-35 (140)
369 cd03213 ABCG_EPDR ABCG transpo 94.3 0.22 4.7E-06 51.1 9.2 24 8-31 36-59 (194)
370 COG2607 Predicted ATPase (AAA+ 94.3 0.26 5.7E-06 50.2 9.2 29 9-37 87-115 (287)
371 cd03266 ABC_NatA_sodium_export 94.3 0.16 3.5E-06 53.2 8.5 23 8-30 32-54 (218)
372 TIGR01069 mutS2 MutS2 family p 94.2 0.15 3.3E-06 63.3 9.3 114 87-210 401-522 (771)
373 cd01129 PulE-GspE PulE/GspE Th 94.2 0.23 4.9E-06 53.5 9.5 102 7-124 80-181 (264)
374 cd02028 UMPK_like Uridine mono 94.2 0.052 1.1E-06 54.7 4.3 25 9-33 1-25 (179)
375 PRK00131 aroK shikimate kinase 94.2 0.04 8.7E-07 55.4 3.6 25 7-31 4-28 (175)
376 cd03215 ABC_Carb_Monos_II This 94.2 0.29 6.3E-06 49.6 9.9 34 8-42 27-60 (182)
377 cd01132 F1_ATPase_alpha F1 ATP 94.2 0.19 4E-06 53.5 8.5 92 8-106 70-180 (274)
378 PRK13543 cytochrome c biogenes 94.2 0.22 4.8E-06 52.0 9.2 23 8-30 38-60 (214)
379 COG0396 sufC Cysteine desulfur 94.2 0.24 5.2E-06 50.3 8.7 57 80-140 154-216 (251)
380 TIGR00064 ftsY signal recognit 94.2 0.071 1.5E-06 57.6 5.5 37 5-41 70-106 (272)
381 cd03264 ABC_drug_resistance_li 94.2 0.18 3.8E-06 52.6 8.4 22 9-30 27-48 (211)
382 PRK00889 adenylylsulfate kinas 94.2 0.068 1.5E-06 53.8 5.1 36 6-41 3-38 (175)
383 PF00560 LRR_1: Leucine Rich R 94.1 0.021 4.5E-07 35.0 0.8 20 682-701 1-20 (22)
384 TIGR01188 drrA daunorubicin re 94.1 0.11 2.4E-06 57.5 7.1 24 8-31 20-43 (302)
385 COG1066 Sms Predicted ATP-depe 94.1 0.14 3E-06 56.5 7.4 82 8-98 94-178 (456)
386 PRK13947 shikimate kinase; Pro 94.1 0.042 9.2E-07 55.1 3.4 25 9-33 3-27 (171)
387 TIGR03305 alt_F1F0_F1_bet alte 94.0 0.12 2.5E-06 59.1 7.2 90 8-101 139-245 (449)
388 PRK03846 adenylylsulfate kinas 94.0 0.075 1.6E-06 54.7 5.2 38 5-42 22-59 (198)
389 cd03285 ABC_MSH2_euk MutS2 hom 94.0 0.046 1E-06 57.2 3.6 24 6-29 29-52 (222)
390 cd03284 ABC_MutS1 MutS1 homolo 94.0 0.29 6.3E-06 51.0 9.5 22 8-29 31-52 (216)
391 cd00227 CPT Chloramphenicol (C 94.0 0.049 1.1E-06 54.8 3.7 25 8-32 3-27 (175)
392 cd00071 GMPK Guanosine monopho 94.0 0.043 9.2E-07 52.6 3.0 27 9-35 1-27 (137)
393 cd03278 ABC_SMC_barmotin Barmo 93.9 0.61 1.3E-05 47.8 11.7 21 9-29 24-44 (197)
394 PRK08972 fliI flagellum-specif 93.9 0.11 2.5E-06 58.8 6.8 89 8-102 163-266 (444)
395 PF00625 Guanylate_kin: Guanyl 93.9 0.054 1.2E-06 55.0 3.9 36 7-42 2-37 (183)
396 KOG2228 Origin recognition com 93.9 0.42 9.1E-06 51.2 10.3 150 8-158 50-219 (408)
397 PRK10751 molybdopterin-guanine 93.9 0.094 2E-06 51.9 5.3 30 5-34 4-33 (173)
398 COG4088 Predicted nucleotide k 93.9 0.31 6.7E-06 48.4 8.7 32 8-39 2-33 (261)
399 COG0488 Uup ATPase components 93.9 0.21 4.6E-06 58.8 9.1 57 80-144 163-225 (530)
400 PRK07132 DNA polymerase III su 93.8 1.6 3.4E-05 47.8 15.0 156 7-190 18-186 (299)
401 PRK14723 flhF flagellar biosyn 93.8 0.34 7.4E-06 59.1 10.7 26 7-32 185-210 (767)
402 PRK13948 shikimate kinase; Pro 93.7 0.057 1.2E-06 54.3 3.6 28 5-32 8-35 (182)
403 PRK13537 nodulation ABC transp 93.7 0.28 6.1E-06 54.3 9.4 24 8-31 34-57 (306)
404 cd02024 NRK1 Nicotinamide ribo 93.7 0.047 1E-06 55.0 3.0 23 9-31 1-23 (187)
405 PRK13647 cbiO cobalt transport 93.7 0.16 3.6E-06 55.2 7.5 23 8-30 32-54 (274)
406 KOG1514 Origin recognition com 93.7 0.79 1.7E-05 54.1 13.0 111 6-124 421-547 (767)
407 PRK14721 flhF flagellar biosyn 93.7 0.57 1.2E-05 53.5 11.9 26 6-31 190-215 (420)
408 COG3640 CooC CO dehydrogenase 93.7 0.1 2.2E-06 53.0 5.2 38 9-46 2-39 (255)
409 PF10236 DAP3: Mitochondrial r 93.7 1.2 2.7E-05 49.1 14.3 48 139-186 258-306 (309)
410 cd02025 PanK Pantothenate kina 93.7 0.049 1.1E-06 56.9 3.0 24 9-32 1-24 (220)
411 TIGR01425 SRP54_euk signal rec 93.6 0.58 1.3E-05 53.4 11.7 37 5-41 98-134 (429)
412 PRK13409 putative ATPase RIL; 93.6 0.33 7.1E-06 58.8 10.4 60 81-144 464-529 (590)
413 cd02023 UMPK Uridine monophosp 93.6 0.05 1.1E-06 56.1 3.0 23 9-31 1-23 (198)
414 PRK12727 flagellar biosynthesi 93.6 0.18 3.9E-06 58.4 7.6 29 6-34 349-377 (559)
415 KOG0062 ATPase component of AB 93.6 0.14 3.1E-06 57.8 6.4 124 8-133 107-262 (582)
416 COG1126 GlnQ ABC-type polar am 93.6 0.35 7.6E-06 48.7 8.5 55 79-133 145-203 (240)
417 PF07725 LRR_3: Leucine Rich R 93.5 0.052 1.1E-06 32.0 1.6 20 418-437 1-20 (20)
418 PRK09270 nucleoside triphospha 93.5 0.075 1.6E-06 56.1 4.3 31 4-34 30-60 (229)
419 COG1419 FlhF Flagellar GTP-bin 93.5 0.2 4.3E-06 55.7 7.5 36 7-42 203-240 (407)
420 cd03300 ABC_PotA_N PotA is an 93.5 0.2 4.4E-06 53.0 7.5 24 8-31 27-50 (232)
421 PF03215 Rad17: Rad17 cell cyc 93.5 0.85 1.8E-05 53.8 13.2 37 5-43 43-79 (519)
422 PF00154 RecA: recA bacterial 93.5 0.21 4.6E-06 54.6 7.6 36 7-42 53-88 (322)
423 cd01130 VirB11-like_ATPase Typ 93.5 0.13 2.8E-06 52.4 5.7 92 7-107 25-119 (186)
424 PRK13949 shikimate kinase; Pro 93.5 0.065 1.4E-06 53.4 3.4 25 8-32 2-26 (169)
425 TIGR02322 phosphon_PhnN phosph 93.5 0.066 1.4E-06 54.2 3.6 25 8-32 2-26 (179)
426 KOG1969 DNA replication checkp 93.4 0.24 5.3E-06 58.2 8.3 27 5-31 324-350 (877)
427 cd03287 ABC_MSH3_euk MutS3 hom 93.4 0.55 1.2E-05 48.9 10.4 24 6-29 30-53 (222)
428 COG1936 Predicted nucleotide k 93.4 0.059 1.3E-06 52.1 2.9 20 9-28 2-21 (180)
429 PRK09544 znuC high-affinity zi 93.4 0.6 1.3E-05 50.0 11.0 24 8-31 31-54 (251)
430 KOG1532 GTPase XAB1, interacts 93.4 0.069 1.5E-06 55.0 3.5 40 5-45 17-56 (366)
431 cd03282 ABC_MSH4_euk MutS4 hom 93.4 0.38 8.2E-06 49.5 9.1 23 7-29 29-51 (204)
432 COG0444 DppD ABC-type dipeptid 93.4 0.38 8.3E-06 51.7 9.2 47 86-133 169-221 (316)
433 TIGR03522 GldA_ABC_ATP gliding 93.4 0.29 6.2E-06 54.1 8.8 23 8-30 29-51 (301)
434 CHL00060 atpB ATP synthase CF1 93.4 0.27 5.8E-06 56.6 8.6 90 8-101 162-275 (494)
435 smart00763 AAA_PrkA PrkA AAA d 93.4 0.094 2E-06 57.9 4.8 29 4-32 75-103 (361)
436 TIGR00073 hypB hydrogenase acc 93.4 0.11 2.5E-06 53.8 5.3 38 4-42 19-56 (207)
437 COG0468 RecA RecA/RadA recombi 93.4 0.13 2.7E-06 55.1 5.6 38 6-43 59-96 (279)
438 TIGR00176 mobB molybdopterin-g 93.4 0.094 2E-06 51.3 4.3 33 9-41 1-33 (155)
439 cd03289 ABCC_CFTR2 The CFTR su 93.4 0.41 8.9E-06 51.9 9.7 34 8-43 31-64 (275)
440 PRK08927 fliI flagellum-specif 93.4 0.2 4.4E-06 57.2 7.5 89 7-101 158-261 (442)
441 cd02020 CMPK Cytidine monophos 93.3 0.065 1.4E-06 52.1 3.2 23 9-31 1-23 (147)
442 TIGR03771 anch_rpt_ABC anchore 93.3 0.72 1.6E-05 48.4 11.3 24 7-30 6-29 (223)
443 KOG0736 Peroxisome assembly fa 93.3 0.82 1.8E-05 54.4 12.2 146 10-180 708-876 (953)
444 COG0194 Gmk Guanylate kinase [ 93.3 0.1 2.2E-06 51.3 4.3 25 7-31 4-28 (191)
445 cd02021 GntK Gluconate kinase 93.3 0.063 1.4E-06 52.5 2.9 23 9-31 1-23 (150)
446 PF03266 NTPase_1: NTPase; In 93.3 0.12 2.5E-06 51.4 4.8 24 10-33 2-25 (168)
447 KOG0079 GTP-binding protein H- 93.2 0.62 1.4E-05 43.2 8.9 20 11-30 12-31 (198)
448 CHL00059 atpA ATP synthase CF1 93.2 0.34 7.4E-06 55.7 9.1 87 8-101 142-246 (485)
449 PRK00279 adk adenylate kinase; 93.2 0.23 5E-06 51.9 7.3 23 9-31 2-24 (215)
450 COG4555 NatA ABC-type Na+ tran 93.2 1 2.2E-05 44.9 10.9 27 6-32 27-53 (245)
451 TIGR01650 PD_CobS cobaltochela 93.2 0.86 1.9E-05 49.9 11.7 29 8-36 65-93 (327)
452 PRK13768 GTPase; Provisional 93.2 0.11 2.4E-06 55.6 4.9 35 7-41 2-36 (253)
453 PRK10463 hydrogenase nickel in 93.2 0.066 1.4E-06 57.5 3.1 36 5-40 102-137 (290)
454 PRK05057 aroK shikimate kinase 93.2 0.077 1.7E-06 53.1 3.5 26 7-32 4-29 (172)
455 COG0703 AroK Shikimate kinase 93.2 0.079 1.7E-06 51.8 3.4 28 8-35 3-30 (172)
456 cd00464 SK Shikimate kinase (S 93.2 0.077 1.7E-06 52.1 3.4 22 10-31 2-23 (154)
457 PRK12339 2-phosphoglycerate ki 93.2 0.087 1.9E-06 53.8 3.8 26 6-31 2-27 (197)
458 COG1131 CcmA ABC-type multidru 93.1 0.4 8.7E-06 52.5 9.3 25 8-32 32-56 (293)
459 cd01428 ADK Adenylate kinase ( 93.1 0.42 9.2E-06 48.9 9.1 22 10-31 2-23 (194)
460 COG2812 DnaX DNA polymerase II 93.1 0.59 1.3E-05 54.4 10.9 92 88-182 119-213 (515)
461 PRK10416 signal recognition pa 93.1 0.13 2.9E-06 56.7 5.5 30 5-34 112-141 (318)
462 PRK13946 shikimate kinase; Pro 93.1 0.078 1.7E-06 53.8 3.4 25 7-31 10-34 (184)
463 PRK05800 cobU adenosylcobinami 93.0 0.27 6E-06 48.9 7.1 79 9-97 3-85 (170)
464 PRK15453 phosphoribulokinase; 93.0 0.13 2.9E-06 54.6 5.1 30 4-33 2-31 (290)
465 COG0003 ArsA Predicted ATPase 93.0 0.12 2.7E-06 56.6 4.9 35 7-41 2-36 (322)
466 COG3638 ABC-type phosphate/pho 93.0 0.61 1.3E-05 47.7 9.4 23 7-29 30-52 (258)
467 TIGR03324 alt_F1F0_F1_al alter 93.0 0.4 8.8E-06 55.4 9.3 88 8-101 163-267 (497)
468 PRK00409 recombination and DNA 93.0 0.63 1.4E-05 58.1 11.7 114 87-210 406-527 (782)
469 KOG0737 AAA+-type ATPase [Post 93.0 0.68 1.5E-05 50.5 10.2 33 6-38 126-158 (386)
470 PRK14493 putative bifunctional 93.0 0.12 2.7E-06 55.5 4.8 35 8-43 2-36 (274)
471 PRK05439 pantothenate kinase; 92.9 0.1 2.3E-06 56.8 4.3 31 3-33 82-112 (311)
472 TIGR01287 nifH nitrogenase iro 92.9 0.11 2.3E-06 56.8 4.4 36 8-44 1-36 (275)
473 PF00437 T2SE: Type II/IV secr 92.9 0.13 2.9E-06 55.9 5.1 106 7-127 127-233 (270)
474 PRK13536 nodulation factor exp 92.9 0.5 1.1E-05 53.0 9.7 24 8-31 68-91 (340)
475 TIGR00554 panK_bact pantothena 92.9 0.11 2.3E-06 56.4 4.2 28 5-32 60-87 (290)
476 PF00158 Sigma54_activat: Sigm 92.9 0.4 8.6E-06 47.6 8.0 22 9-30 24-45 (168)
477 PRK15429 formate hydrogenlyase 92.9 1.7 3.6E-05 54.2 15.3 35 8-42 400-434 (686)
478 COG1102 Cmk Cytidylate kinase 92.9 0.092 2E-06 50.0 3.2 24 9-32 2-25 (179)
479 TIGR03263 guanyl_kin guanylate 92.8 0.076 1.7E-06 53.7 2.9 24 8-31 2-25 (180)
480 PRK13236 nitrogenase reductase 92.8 0.15 3.2E-06 56.1 5.4 32 3-34 2-33 (296)
481 PRK13975 thymidylate kinase; P 92.8 0.1 2.2E-06 53.7 3.9 26 8-33 3-28 (196)
482 TIGR02788 VirB11 P-type DNA tr 92.8 0.2 4.4E-06 55.4 6.5 112 7-129 144-256 (308)
483 TIGR00968 3a0106s01 sulfate AB 92.8 0.35 7.6E-06 51.4 8.1 23 8-30 27-49 (237)
484 cd01136 ATPase_flagellum-secre 92.8 0.41 8.8E-06 52.7 8.6 26 7-32 69-94 (326)
485 PF12775 AAA_7: P-loop contain 92.8 0.092 2E-06 56.7 3.6 25 8-32 34-58 (272)
486 PRK14738 gmk guanylate kinase; 92.8 0.11 2.4E-06 53.8 4.1 28 3-30 9-36 (206)
487 PRK11608 pspF phage shock prot 92.8 1.7 3.6E-05 48.6 13.7 22 9-30 31-52 (326)
488 COG2274 SunT ABC-type bacterio 92.7 0.31 6.7E-06 59.7 8.4 22 8-29 500-521 (709)
489 cd01124 KaiC KaiC is a circadi 92.7 0.12 2.6E-06 52.6 4.3 34 9-42 1-34 (187)
490 PF13481 AAA_25: AAA domain; P 92.7 0.33 7.3E-06 49.6 7.6 24 9-32 34-57 (193)
491 TIGR01041 ATP_syn_B_arch ATP s 92.7 0.36 7.7E-06 55.7 8.4 91 8-101 142-251 (458)
492 PRK13546 teichoic acids export 92.7 0.51 1.1E-05 50.9 9.3 24 8-31 51-74 (264)
493 cd01983 Fer4_NifH The Fer4_Nif 92.7 0.14 3E-06 45.4 4.2 25 9-33 1-25 (99)
494 TIGR02902 spore_lonB ATP-depen 92.7 0.5 1.1E-05 56.4 10.0 24 7-30 86-109 (531)
495 cd03116 MobB Molybdenum is an 92.7 0.16 3.5E-06 49.8 4.8 28 8-35 2-29 (159)
496 COG4107 PhnK ABC-type phosphon 92.7 1.6 3.4E-05 42.2 11.0 24 8-31 33-56 (258)
497 PRK13657 cyclic beta-1,2-gluca 92.6 0.33 7.2E-06 59.4 8.7 23 8-30 362-384 (588)
498 TIGR00455 apsK adenylylsulfate 92.6 0.52 1.1E-05 47.8 8.7 28 6-33 17-44 (184)
499 smart00072 GuKc Guanylate kina 92.6 0.11 2.4E-06 52.8 3.7 30 7-36 2-31 (184)
500 COG1703 ArgK Putative periplas 92.6 0.19 4.2E-06 53.1 5.5 47 3-50 47-93 (323)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.3e-99 Score=968.18 Aligned_cols=855 Identities=32% Similarity=0.526 Sum_probs=679.0
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeec--cccc---c-----ccCCHHHHHHHHHHhhhcc-ccc
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDV--RGNS---E-----TAGGLEHLQKQMLSTTLSE-KLE 71 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~--~~~~---~-----~~~~l~~l~~~ll~~l~~~-~~~ 71 (1083)
..++++|||||||||+||||||+++|+++..+|++.+|+... +... . .......++++++.++... ...
T Consensus 203 ~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~ 282 (1153)
T PLN03210 203 ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIK 282 (1153)
T ss_pred ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcc
Confidence 356799999999999999999999999999999999998642 1110 0 0011234666666664322 111
Q ss_pred cCCCCchHHHHHHhcCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHH
Q 001407 72 VAGPNIPHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAF 151 (1083)
Q Consensus 72 ~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~ 151 (1083)
.. ....++++++++|+||||||||+.++|+.+.....|+++||+||||||+++++..++ .+++|+|+.++++||+
T Consensus 283 ~~---~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~--~~~~~~v~~l~~~ea~ 357 (1153)
T PLN03210 283 IY---HLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHG--IDHIYEVCLPSNELAL 357 (1153)
T ss_pred cC---CHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcC--CCeEEEecCCCHHHHH
Confidence 11 226788999999999999999999999999998899999999999999999998776 7789999999999999
Q ss_pred HHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHhhhcCcchhhHHhHhhhcccCCC
Q 001407 152 EHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNRICESEIHDIYDILKISFNKLT 231 (1083)
Q Consensus 152 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~~~~~~~~~~i~~~l~~Sy~~L~ 231 (1083)
+||+++||++..+++++.+++++|+++|+|+|||++++|++|++++..+|+++++++++....++ ..+|++||++|+
T Consensus 358 ~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I---~~~L~~SYd~L~ 434 (1153)
T PLN03210 358 EMFCRSAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKI---EKTLRVSYDGLN 434 (1153)
T ss_pred HHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHH---HHHHHHhhhccC
Confidence 99999999988888889999999999999999999999999999999999999999988665555 999999999997
Q ss_pred c-cccceEEEEeeccCCCChhHHHHHHhhh---hHhhhHHHhhccceEEeCCEEEeeHHHHHHHHHHHhhccccCCCccc
Q 001407 232 P-RVKSIFLDIACFFEGEDKDFVASILDDS---ESDVLDILIDKSLVSISGNFLNMHDILQEMGRQIVRQESEKEPGKRS 307 (1083)
Q Consensus 232 ~-~~k~~fl~~a~f~~~~~~~~~~~~l~~~---~~~~l~~L~~~sLi~~~~~~~~mHdll~~~~~~~~~~~~~~~~~~~~ 307 (1083)
+ .+|.||+++||||.+++++.+..+++++ ++.+++.|++++||+...++++|||++|+||++++++++ .+|++|+
T Consensus 435 ~~~~k~~Fl~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~ 513 (1153)
T PLN03210 435 NKKDKAIFRHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVREDIVEMHSLLQEMGKEIVRAQS-NEPGERE 513 (1153)
T ss_pred ccchhhhhheehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcCCeEEhhhHHHHHHHHHHHhhc-CCCCcce
Confidence 6 5999999999999999999999999876 677899999999999999999999999999999999997 7899999
Q ss_pred cCCChhHHHHHHhcCcCCCcEeeEEeecCcccccccChhhhcCCCCCceEeeecCcccccccCCCCchhhccccceeecC
Q 001407 308 RLWDPKEISRVLKHNKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLP 387 (1083)
Q Consensus 308 ~l~~~~~i~~~l~~~~~~~~~~~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~l~~l~~~~~~l~ 387 (1083)
|+|+++||++++++++|++.+++|++|++......+++++|.+|++|++|+++.+.... .......+|
T Consensus 514 ~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~------------~~~~~~~lp 581 (1153)
T PLN03210 514 FLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQ------------KKEVRWHLP 581 (1153)
T ss_pred eEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccc------------cccceeecC
Confidence 99999999999999999999999999999998899999999999999999998764211 122346789
Q ss_pred CCCCCCCCCCcEEEcCCCCCCCCCCCCCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCC
Q 001407 388 NGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN 467 (1083)
Q Consensus 388 ~~~~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~ 467 (1083)
+++..+|.+||+|+|.+|+++.+|..|.+.+|++|+|++|+++.+|++ +..+++|+.|+|++|..++.+|..
T Consensus 582 ~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~--------~~~l~~Lk~L~Ls~~~~l~~ip~l 653 (1153)
T PLN03210 582 EGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG--------VHSLTGLRNIDLRGSKNLKEIPDL 653 (1153)
T ss_pred cchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc--------cccCCCCCEEECCCCCCcCcCCcc
Confidence 999999999999999999999999999999999999999999998654 458999999999999888888876
Q ss_pred CCCCCCcEEEecCCcCccccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEecc
Q 001407 468 LHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILL 547 (1083)
Q Consensus 468 ~~~~~L~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~ 547 (1083)
..+++|+.|++++|..+ ..+|.+++++++|+.|++++|..++.+|..+ ++++|++|+++
T Consensus 654 s~l~~Le~L~L~~c~~L--------------------~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Ls 712 (1153)
T PLN03210 654 SMATNLETLKLSDCSSL--------------------VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLS 712 (1153)
T ss_pred ccCCcccEEEecCCCCc--------------------cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCC
Confidence 66677777777777544 4667788899999999999999999999876 89999999999
Q ss_pred CCcCcccCchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCc-------cCCCCcCCCchhhhhhcccc
Q 001407 548 GCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD-------NLPDNIGSLEYLYYILAAAS 620 (1083)
Q Consensus 548 ~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~-------~~p~~l~~l~~L~~L~l~~~ 620 (1083)
+|..++.+|.. ..+|++|++++|.+..+|..+ .+++|+.|.+.++.... ..+......++|+.|++++|
T Consensus 713 gc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n 788 (1153)
T PLN03210 713 GCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDI 788 (1153)
T ss_pred CCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhhccccchheeCCCC
Confidence 99988888864 467899999999999999876 58899999887754221 11122234578999999998
Q ss_pred c-ccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCC-CcCchhccCCCCCcEEEeeCCCCcccch
Q 001407 621 A-ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAV-REIPQEIAYLSSLEILYLSGNNFESLPA 698 (1083)
Q Consensus 621 ~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~lp~~l~~l~~L~~L~Ls~n~l~~lp~ 698 (1083)
. +..+|..++.+++|+.|++++|...+.+|... .+++|+.|++++|.. ..+|. ..++|+.|+|++|.++.+|.
T Consensus 789 ~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~--~L~sL~~L~Ls~c~~L~~~p~---~~~nL~~L~Ls~n~i~~iP~ 863 (1153)
T PLN03210 789 PSLVELPSSIQNLHKLEHLEIENCINLETLPTGI--NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSRTGIEEVPW 863 (1153)
T ss_pred CCccccChhhhCCCCCCEEECCCCCCcCeeCCCC--CccccCEEECCCCCccccccc---cccccCEeECCCCCCccChH
Confidence 5 56799999999999999999998888777653 689999999999854 44554 24789999999999999999
Q ss_pred hhhCCCCCCEeeccCcccCCCCCCCC---CCccEEeecCCCCCCcCCCCCCCCcEEeecCCCCCccCCCCCCCccEEecc
Q 001407 699 IIKQMSQLRFIHLEDFNMLQSLPELP---LCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPELPLCLQYLNLE 775 (1083)
Q Consensus 699 ~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~l~~l~~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~ls 775 (1083)
++..+++|+.|+|++|+.+..+|..+ ++|+.|++.+|..+..++.. +++
T Consensus 864 si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~----------~~~------------------ 915 (1153)
T PLN03210 864 WIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWN----------GSP------------------ 915 (1153)
T ss_pred HHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCC----------CCc------------------
Confidence 99999999999999999988887533 34555555555544433210 000
Q ss_pred CCCCCCcCCCcccccceeecccccCcCcchhhhhccccchhhHHhhhhcCCCCCccCccccccccceeeecCcccccccc
Q 001407 776 DCNMLRSLPELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPESLKSAAICFEFTNCLKLNGKA 855 (1083)
Q Consensus 776 ~n~~l~~lp~~~~sL~~L~i~~c~~l~~lp~~l~~L~~L~~l~l~~l~~~~~~l~~~p~~l~~~l~~l~i~~C~~L~~~~ 855 (1083)
. ....+.++. ... +| ....+.|.||.+|++.+
T Consensus 916 ------------~--~~~~~~~n~-~~~----------------------------~p-----~~~~l~f~nC~~L~~~a 947 (1153)
T PLN03210 916 ------------S--EVAMATDNI-HSK----------------------------LP-----STVCINFINCFNLDQEA 947 (1153)
T ss_pred ------------h--hhhhhcccc-ccc----------------------------CC-----chhccccccccCCCchh
Confidence 0 000000000 000 01 12346789999999877
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhhHHHHhhhhhcccccEEEecCCCCCcccccCCCCceEE-EECCCCCCCCCcceeEEE
Q 001407 856 NNKILADSLLRIRHMAIASLRLGYEMAINEKLSELRGSLIVLPGSEIPDWFSNQSSGSSIC-IQLPPHSSCRNLIGFAFC 934 (1083)
Q Consensus 856 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~iP~wf~~~~~g~si~-~~lp~~~~~~~~~gf~~c 934 (1083)
|..- + .....+++||.+||+||.||+.|++++ |++|++|.+..|+||++|
T Consensus 948 ~l~~--------~---------------------~~~~~~~l~g~evp~~f~hr~~g~sl~~i~l~~~~~~~~~~~f~~c 998 (1153)
T PLN03210 948 LLQQ--------Q---------------------SIFKQLILSGEEVPSYFTHRTTGASLTNIPLLHISPCQPFFRFRAC 998 (1153)
T ss_pred hhcc--------c---------------------ccceEEECCCccCchhccCCcccceeeeeccCCcccCCCccceEEE
Confidence 5210 0 012237899999999999999999998 999999998899999999
Q ss_pred EEeccCCCCCccccccccceeEEEEEeeccCCcceeccccccccCCCcCCceEEEEEeccCc-------cc--C----CC
Q 001407 935 AVLDSKKVDSDCFRYFYVSFQFDLEIKTLSETKHVDLGYNSRYIEDLIDSDRVILGFKPCLN-------VG--F----PD 1001 (1083)
Q Consensus 935 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sdh~~~~y~~~~~-------~~--~----~~ 1001 (1083)
+|+++...... ...+.+.|.|++.+..+... +.+.++|+|+.|....+ .. . ..
T Consensus 999 ~v~~~~~~~~~-----~~~~~~~~~c~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1064 (1153)
T PLN03210 999 AVVDSESFFII-----SVSFDIQVCCRFIDRLGNHF---------DSPYQPHVFSVTKKGSHLVIFDCCFPLNEDNAPLA 1064 (1153)
T ss_pred EEEecCccccC-----CCceeEEEEEEEECCCCCcc---------ccCCCceeEeeeccccceEEecccccccccccchh
Confidence 99988764322 22468889998876532210 12345555555443211 00 0 11
Q ss_pred C--CceEEEEEEEeecCCceEEEEeeceeeecCCCC
Q 001407 1002 G--YHHTIATFKFFAERKFYKIKRCGLCPVYANPSE 1035 (1083)
Q Consensus 1002 ~--~~~~~~~f~f~~~~~~~~vk~CGv~liy~~d~~ 1035 (1083)
+ |++..+.|+|......++||+|||+++|+.+..
T Consensus 1065 ~~~~~~~~~~f~~~~~~~~~~~~~cg~~~~~~~~~~ 1100 (1153)
T PLN03210 1065 ELNYDHVDIQFRLTNKNSQLKLKGCGIRLSEDDSSL 1100 (1153)
T ss_pred ccCCceeeEEEEEecCCCCeEEEeeeEEEeccCCCc
Confidence 2 334444555554444579999999999965544
No 2
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=7.8e-58 Score=553.72 Aligned_cols=438 Identities=26% Similarity=0.332 Sum_probs=319.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHH---hcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCC---CCch
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQ---FSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG---PNIP 78 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~---~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~~ 78 (1083)
++.++|||+||||+||||||++++|+ +..+|+.++|+.. |.. +....++++++..++........ .+..
T Consensus 177 d~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~V----Sk~-f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~ 251 (889)
T KOG4658|consen 177 DDVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVV----SKE-FTTRKIQQTILERLGLLDEEWEDKEEDELA 251 (889)
T ss_pred CCCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEE----ccc-ccHHhHHHHHHHHhccCCcccchhhHHHHH
Confidence 34499999999999999999999993 6789999999984 334 78889999999986654433322 2456
Q ss_pred HHHHHHhcCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhh-hccccccEEEecCCCHHHHHHHHHHh
Q 001407 79 HFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK-FRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~-~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
..+.+.|++||+||||||||+..+|+.+..++|....||+|++|||+++|+.. ++ ++..++++.|+.+|||+||++.
T Consensus 252 ~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~--~~~~~~v~~L~~~eaW~LF~~~ 329 (889)
T KOG4658|consen 252 SKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMG--VDYPIEVECLTPEEAWDLFQKK 329 (889)
T ss_pred HHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhcccc--CCccccccccCccccHHHHHHh
Confidence 88899999999999999999999999999999998899999999999999998 66 6888999999999999999999
Q ss_pred hcCCC-CCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCC-CHHHHHHHHHHHhhhcCcc----hhhHHhHhhhcccCCC
Q 001407 158 AFKEN-HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-RKSHWGKVLHDLNRICESE----IHDIYDILKISFNKLT 231 (1083)
Q Consensus 158 a~~~~-~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~-~~~~w~~~l~~l~~~~~~~----~~~i~~~l~~Sy~~L~ 231 (1083)
||... ...+...++|++|+++|+|+|||++++|+.|+.| +..+|+.+.+.+......+ .+.+..++++|||.|+
T Consensus 330 v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~ 409 (889)
T KOG4658|consen 330 VGPNTLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLP 409 (889)
T ss_pred hccccccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhh
Confidence 98763 3445689999999999999999999999999988 6779999999887763222 3568999999999999
Q ss_pred ccccceEEEEeeccCCCChhH---HHHHHhhh--------------hHhhhHHHhhccceEEeC-----CEEEeeHHHHH
Q 001407 232 PRVKSIFLDIACFFEGEDKDF---VASILDDS--------------ESDVLDILIDKSLVSISG-----NFLNMHDILQE 289 (1083)
Q Consensus 232 ~~~k~~fl~~a~f~~~~~~~~---~~~~l~~~--------------~~~~l~~L~~~sLi~~~~-----~~~~mHdll~~ 289 (1083)
++.|.||+|||.||+++.++. +..|.+++ +..++.+|++++|+...+ ..+.|||++|+
T Consensus 410 ~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe 489 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVRE 489 (889)
T ss_pred HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHH
Confidence 999999999999999998765 33443322 778899999999999875 67999999999
Q ss_pred HHHHHHhhccccCCCccccCCChhHHHHHHhcCcCCCcEeeEEeecCcccccccChhhhcCCCCCceEeeecCccccccc
Q 001407 290 MGRQIVRQESEKEPGKRSRLWDPKEISRVLKHNKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEK 369 (1083)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~i~~~l~~~~~~~~~~~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~~ 369 (1083)
||.+++.+.+..... .+.-+-..... ......-
T Consensus 490 ~al~ias~~~~~~e~-------------------------~iv~~~~~~~~----~~~~~~~------------------ 522 (889)
T KOG4658|consen 490 MALWIASDFGKQEEN-------------------------QIVSDGVGLSE----IPQVKSW------------------ 522 (889)
T ss_pred HHHHHhccccccccc-------------------------eEEECCcCccc----cccccch------------------
Confidence 999999865421111 00000000000 0000111
Q ss_pred CCCCchhhccccceeecCCCCCCCCCCCcEEEcCCCCCCCCCCCCCCCCceEEEcCCCc--cccccCCCccccCcccccC
Q 001407 370 LPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSK--VEQPWEGEKACVPSSIQNF 447 (1083)
Q Consensus 370 l~~l~~l~~l~~~~~~l~~~~~~~~~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~--i~~lw~~~~~~~p~~~~~l 447 (1083)
...|...+.+|.+..++.....++|++|-+..|. +..+ .+..|..+
T Consensus 523 -------------------------~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~i-------s~~ff~~m 570 (889)
T KOG4658|consen 523 -------------------------NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEI-------SGEFFRSL 570 (889)
T ss_pred -------------------------hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhc-------CHHHHhhC
Confidence 2344444445555555555545566666666664 3333 23346677
Q ss_pred CCCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCccccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCC
Q 001407 448 KYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR 527 (1083)
Q Consensus 448 ~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~ 527 (1083)
+.|++|||++|..+..+|..++ ..-+|++|+++++.+..+|.++++|+.|.+||+..+..
T Consensus 571 ~~LrVLDLs~~~~l~~LP~~I~--------------------~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~ 630 (889)
T KOG4658|consen 571 PLLRVLDLSGNSSLSKLPSSIG--------------------ELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR 630 (889)
T ss_pred cceEEEECCCCCccCcCChHHh--------------------hhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence 7778777777665554444331 01123444444455556666666666666666666555
Q ss_pred cccccccccCCCCCcEEeccC
Q 001407 528 LKRISTSFCKLRSLVTLILLG 548 (1083)
Q Consensus 528 ~~~lp~~l~~l~~L~~L~L~~ 548 (1083)
+..+|..+..+.+|++|.+..
T Consensus 631 l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 631 LESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred cccccchhhhcccccEEEeec
Confidence 555555455566666666544
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.5e-41 Score=438.64 Aligned_cols=512 Identities=19% Similarity=0.217 Sum_probs=361.2
Q ss_pred cCCCccccCCChhHHHHHHhcCcCCCcEeeEEeecCcccccccChhhhcCCCCCceEeeecCcccc-cc-c-CCCCchhh
Q 001407 301 KEPGKRSRLWDPKEISRVLKHNKGTDAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYE-IE-K-LPSMSTEE 377 (1083)
Q Consensus 301 ~~~~~~~~l~~~~~i~~~l~~~~~~~~~~~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~-i~-~-l~~l~~l~ 377 (1083)
.++.++.+.|+..+.+......+.....+...+|++.+......+.+|..+++|++|++++|.+.+ ++ . +..+..|+
T Consensus 42 ~~~~~~~~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~ 121 (968)
T PLN00113 42 NDPLKYLSNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLR 121 (968)
T ss_pred CCCcccCCCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCC
Confidence 356666777865433322222222223355677788777666668899999999999999998752 21 1 22455566
Q ss_pred ccccceeecCCCCC-CCCCCCcEEEcCCCCCC-CCCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEe
Q 001407 378 QLSYSKVQLPNGLD-YLPKKLRYLHWDTYPLR-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALS 454 (1083)
Q Consensus 378 ~l~~~~~~l~~~~~-~~~~~L~~L~l~~~~l~-~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~ 454 (1083)
.++.+...+...+. ...++|++|++++|.+. .+|..+ .+++|++|+|++|.+... +|..++++++|++|+
T Consensus 122 ~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~~~~l~~L~~L~ 194 (968)
T PLN00113 122 YLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-------IPNSLTNLTSLEFLT 194 (968)
T ss_pred EEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-------CChhhhhCcCCCeee
Confidence 65555444432111 12356777777777765 456555 677777777777776654 677777777777777
Q ss_pred ccCCcCCcccCCCC-CCCCCcEEEecCCcCccccCCC---cCCccEEEcCCcccc-ccCccccCCCCCcEEEeeCCCCcc
Q 001407 455 FKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQI---SGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLK 529 (1083)
Q Consensus 455 L~~~~~l~~lp~~~-~~~~L~~l~l~~~~~l~~~~~~---~~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~ 529 (1083)
|++|...+.+|..+ .+.+|+.|+++++.....+|.. ..+|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 195 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~ 274 (968)
T PLN00113 195 LASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSG 274 (968)
T ss_pred ccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeec
Confidence 77777666666655 4567777777777555555533 345677777777665 567777777777777777777667
Q ss_pred cccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCC-CCCcccCCCCCCcEEeccCCCCCccCCCCcCC
Q 001407 530 RISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGS 608 (1083)
Q Consensus 530 ~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~ 608 (1083)
.+|..+.++++|++|++++|...+.+|..+.++++|++|++++|.+. .+|..+..+++|+.|++++|.+.+.+|..++.
T Consensus 275 ~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 275 PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred cCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 77777777777777777777777777777777777777777777766 55666777777777777777777777777777
Q ss_pred Cchhhhhhccccccc-CCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCc-CchhccCCCCCcEE
Q 001407 609 LEYLYYILAAASAIS-QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEIL 686 (1083)
Q Consensus 609 l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L 686 (1083)
+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.+..|.. +..+++|+.|++++|.+.. +|..+..+++|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~-~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKS-LGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHH-HhCCCCCCEEECcCCEeeeECChhHhcCCCCCEE
Confidence 777777777777765 55666667777777777777766655543 4567788888888887764 67777788888888
Q ss_pred EeeCCCCc-ccchhhhCCCCCCEeeccCcccCCCCCCC--CCCccEEeecCCCCCCcCCCC---CCCCcEEeecCCCCCc
Q 001407 687 YLSGNNFE-SLPAIIKQMSQLRFIHLEDFNMLQSLPEL--PLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLR 760 (1083)
Q Consensus 687 ~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~~L~l~~c~~l~~l~~~---~~~L~~L~Ls~n~~~~ 760 (1083)
++++|+++ .+|..+..+++|+.|++++|++.+.+|.. .++|+.|++++|.....+|.. ..+|+.|++++|.+.+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 88888877 45566677888888888888887777753 256888888888776666643 2368888888888888
Q ss_pred cCCC---CCCCccEEeccCCCCCCcCCCc---ccccceeecccccCcCcchhhhhccccchhhHHh
Q 001407 761 SLPE---LPLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLE 820 (1083)
Q Consensus 761 ~~~~---~~~~L~~L~ls~n~~l~~lp~~---~~sL~~L~i~~c~~l~~lp~~l~~L~~L~~l~l~ 820 (1083)
.+|. .+++|+.|++++|.+.+.+|.. +++|+.|++++|+....+|..+..+++|+.++++
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls 579 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNIS 579 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEecc
Confidence 8875 3466888888888888888865 4678888888888888888888888888888874
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.1e-38 Score=412.23 Aligned_cols=466 Identities=20% Similarity=0.241 Sum_probs=402.4
Q ss_pred EeecCccccc-ccChhhhcCCCCCceEeeecCcccccccCCCCchhhccccceeec----CCCCCCCCCCCcEEEcCCCC
Q 001407 332 FLDLSKIKGI-NLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQL----PNGLDYLPKKLRYLHWDTYP 406 (1083)
Q Consensus 332 ~l~ls~~~~~-~~~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~l~~l~~~~~~l----~~~~~~~~~~L~~L~l~~~~ 406 (1083)
.||++.+... .+....|.++++||+|++++|.+.+......+..|+.++.+.+.+ |..+..+ ++|++|++++|.
T Consensus 97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l-~~L~~L~L~~n~ 175 (968)
T PLN00113 97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSF-SSLKVLDLGGNV 175 (968)
T ss_pred EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcC-CCCCEEECccCc
Confidence 4677777654 566677889999999999999987654444556666666655543 4444444 799999999999
Q ss_pred CC-CCCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCC-CCCCCcEEEecCCcC
Q 001407 407 LR-TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVN 483 (1083)
Q Consensus 407 l~-~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~l~l~~~~~ 483 (1083)
+. .+|..+ ++++|++|+|++|.+... +|..++++++|++|+|++|...+.+|..+ .+.+|+.|++++|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 248 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQ-------IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCc-------CChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCcee
Confidence 86 678777 899999999999999876 79999999999999999999888888876 678999999999976
Q ss_pred ccccCCCc---CCccEEEcCCcccc-ccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhh
Q 001407 484 LIEFPQIS---GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEIL 559 (1083)
Q Consensus 484 l~~~~~~~---~~L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l 559 (1083)
...+|..+ .+|++|++++|.+. .+|.++.++++|++|++++|.+.+.+|..+.++++|++|++++|...+.+|..+
T Consensus 249 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~ 328 (968)
T PLN00113 249 TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVAL 328 (968)
T ss_pred ccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhH
Confidence 66666544 56799999999887 688999999999999999999989999999999999999999999999999999
Q ss_pred hhccccCeeccCCCCCC-CCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhccccccc-CCCchhhcccCccE
Q 001407 560 EKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRS 637 (1083)
Q Consensus 560 ~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~ 637 (1083)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+. .+|..+..+++|+.
T Consensus 329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~ 408 (968)
T PLN00113 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRR 408 (968)
T ss_pred hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCE
Confidence 99999999999999997 78889999999999999999999999999999999999999999987 67888999999999
Q ss_pred EEcCCCCCCCCcCcccccCCCCccEEEecCCCCCc-CchhccCCCCCcEEEeeCCCCc-ccchhhhCCCCCCEeeccCcc
Q 001407 638 LDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFE-SLPAIIKQMSQLRFIHLEDFN 715 (1083)
Q Consensus 638 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~~~ 715 (1083)
|++++|.+.+..|.. +..++.|+.|++++|.+.. +|..+..+++|+.|++++|++. .+|.. ...++|+.|++++|+
T Consensus 409 L~L~~n~l~~~~p~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~~~L~~L~ls~n~ 486 (968)
T PLN00113 409 VRLQDNSFSGELPSE-FTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQ 486 (968)
T ss_pred EECcCCEeeeECChh-HhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcc-cccccceEEECcCCc
Confidence 999999988766643 6789999999999999886 5777888999999999999987 55544 456899999999999
Q ss_pred cCCCCCCC---CCCccEEeecCCCCCCcCCCC---CCCCcEEeecCCCCCccCCCC---CCCccEEeccCCCCCCcCCCc
Q 001407 716 MLQSLPEL---PLCLKYLHLIDCKMLQSLPVL---PFCLESLDLTGCNMLRSLPEL---PLCLQYLNLEDCNMLRSLPEL 786 (1083)
Q Consensus 716 ~l~~lp~~---~~~L~~L~l~~c~~l~~l~~~---~~~L~~L~Ls~n~~~~~~~~~---~~~L~~L~ls~n~~l~~lp~~ 786 (1083)
+.+.+|.. .++|+.|++++|.....+|.. ..+|++|+|++|.+.+.+|.. +++|+.|++++|++.+.+|..
T Consensus 487 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 566 (968)
T PLN00113 487 FSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566 (968)
T ss_pred cCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChh
Confidence 99888853 468999999999887777753 357999999999999999863 567999999999999999975
Q ss_pred ---ccccceeecccccCcCcchhh
Q 001407 787 ---PLCLQLLTVRNCNRLQSLPEI 807 (1083)
Q Consensus 787 ---~~sL~~L~i~~c~~l~~lp~~ 807 (1083)
+++|+.|++++|+....+|..
T Consensus 567 l~~l~~L~~l~ls~N~l~~~~p~~ 590 (968)
T PLN00113 567 LGNVESLVQVNISHNHLHGSLPST 590 (968)
T ss_pred HhcCcccCEEeccCCcceeeCCCc
Confidence 467999999999988888864
No 5
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=7.7e-34 Score=313.78 Aligned_cols=242 Identities=31% Similarity=0.478 Sum_probs=189.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHH--hcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcccccc----CCCCc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQ--FSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEV----AGPNI 77 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~--~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~----~~~~~ 77 (1083)
++++++|+|+||||+||||||++++++ ++.+|+.++|+...+. .....+.++++..+....... +..+.
T Consensus 16 ~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~-----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 90 (287)
T PF00931_consen 16 SNEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKN-----PSLEQLLEQILRQLGEPDSSISDPKDIEEL 90 (287)
T ss_dssp TTSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES------SCCHHHHHHHHHHHTCC-STSSCCSSHHHH
T ss_pred CCCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccc-----cccccccccccccccccccccccccccccc
Confidence 478999999999999999999999987 8899999999975432 344778888888877664332 12225
Q ss_pred hHHHHHHhcCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 78 PHFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 78 ~~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
...+++.++++++||||||||+..+|+.+...++.+..|++||||||++.++..+.. ....|++++|+++||++||.+.
T Consensus 91 ~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~-~~~~~~l~~L~~~ea~~L~~~~ 169 (287)
T PF00931_consen 91 QDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGG-TDKVIELEPLSEEEALELFKKR 169 (287)
T ss_dssp HHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHS-CEEEEECSS--HHHHHHHHHHH
T ss_pred cccchhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc
Confidence 588889999999999999999999999998888777789999999999999887752 2678999999999999999999
Q ss_pred hcCCC-CCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCC-CHHHHHHHHHHHhhhcCc---chhhHHhHhhhcccCCCc
Q 001407 158 AFKEN-HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-RKSHWGKVLHDLNRICES---EIHDIYDILKISFNKLTP 232 (1083)
Q Consensus 158 a~~~~-~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~-~~~~w~~~l~~l~~~~~~---~~~~i~~~l~~Sy~~L~~ 232 (1083)
++... ...+...+.+++|+++|+|+|||++++|++|+.+ +..+|+.+++.+...... ....+..++.+||+.|++
T Consensus 170 ~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~ 249 (287)
T PF00931_consen 170 AGRKESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPD 249 (287)
T ss_dssp HTSHS----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCc
Confidence 98765 3345567789999999999999999999999654 678999999887765532 235689999999999999
Q ss_pred cccceEEEEeeccCCCChh
Q 001407 233 RVKSIFLDIACFFEGEDKD 251 (1083)
Q Consensus 233 ~~k~~fl~~a~f~~~~~~~ 251 (1083)
+.|+||++||+||.++.++
T Consensus 250 ~~~~~f~~L~~f~~~~~i~ 268 (287)
T PF00931_consen 250 ELRRCFLYLSIFPEGVPIP 268 (287)
T ss_dssp CCHHHHHHGGGSGTTS-EE
T ss_pred cHHHHHhhCcCCCCCceEC
Confidence 9999999999999988754
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=1.6e-28 Score=265.70 Aligned_cols=371 Identities=21% Similarity=0.201 Sum_probs=180.3
Q ss_pred CCcEEEcCCCCCCCCCCC----CCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCC
Q 001407 396 KLRYLHWDTYPLRTLPSN----FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFV 471 (1083)
Q Consensus 396 ~L~~L~l~~~~l~~lp~~----~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~ 471 (1083)
.-+.|+.+++.+..+... +-+..-+.||+++|++..+ .+..|.++++|+.+++..|. +..+|......
T Consensus 53 ~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~i-------d~~~f~nl~nLq~v~l~~N~-Lt~IP~f~~~s 124 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHI-------DFEFFYNLPNLQEVNLNKNE-LTRIPRFGHES 124 (873)
T ss_pred CceeeecCccccccccccccCCcCccceeeeeccccccccC-------cHHHHhcCCcceeeeeccch-hhhcccccccc
Confidence 455667777666654222 2345566788888888776 56677788888888886654 55556544322
Q ss_pred CCcEEEecCCcCccccCCCcCCccEEEcCCccccccC-ccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCc
Q 001407 472 CPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVP-SSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL 550 (1083)
Q Consensus 472 ~L~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp-~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~ 550 (1083)
++++.|+|.+|.|.++. +.+..++.|+.|||+.|.+...--.+|..-.++++|+|++|.
T Consensus 125 --------------------ghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~ 184 (873)
T KOG4194|consen 125 --------------------GHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNR 184 (873)
T ss_pred --------------------cceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccc
Confidence 23344444444444333 223344444444444443222111223333444444444444
Q ss_pred CcccCchhhhhccccCeeccCCCCCCCCCcc-cCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCch-
Q 001407 551 NLEHFPEILEKMEHLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSS- 628 (1083)
Q Consensus 551 ~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~-~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~- 628 (1083)
+...--..|.++.+|..|.|+.|+++.+|.- |.+|++|+.|+|..|.+.-.--..|..+++|+.|.+..|.+..+.+.
T Consensus 185 It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~ 264 (873)
T KOG4194|consen 185 ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGA 264 (873)
T ss_pred ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcc
Confidence 4433333444444444444444444444432 33344444444444443222222344445555555555555444332
Q ss_pred hhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcC-chhccCCCCCcEEEeeCCCCcccc-hhhhCCCCC
Q 001407 629 VALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNNFESLP-AIIKQMSQL 706 (1083)
Q Consensus 629 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L 706 (1083)
+..+.++++|+|+.|++. .+....+.++..|+.|++++|.+..+ ++.+...++|+.|+|++|+++.++ ..+..+..|
T Consensus 265 Fy~l~kme~l~L~~N~l~-~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 265 FYGLEKMEHLNLETNRLQ-AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred eeeecccceeecccchhh-hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 233444555555554422 22222334445555555555555443 333444555555555555555544 334445555
Q ss_pred CEeeccCcccCCCCC---CCCCCccEEeecCCCCCCcC------CCCCCCCcEEeecCCCCCccCCC----CCCCccEEe
Q 001407 707 RFIHLEDFNMLQSLP---ELPLCLKYLHLIDCKMLQSL------PVLPFCLESLDLTGCNMLRSLPE----LPLCLQYLN 773 (1083)
Q Consensus 707 ~~L~L~~~~~l~~lp---~~~~~L~~L~l~~c~~l~~l------~~~~~~L~~L~Ls~n~~~~~~~~----~~~~L~~L~ 773 (1083)
++|+|++|.+...-. ...++|+.|++++|..-..+ ....++|+.|++.||++- ++|. .+.+|+.|+
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk-~I~krAfsgl~~LE~Ld 422 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLK-SIPKRAFSGLEALEHLD 422 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceee-ecchhhhccCcccceec
Confidence 555555543321111 12233444444443321110 112346777777777653 4442 456678888
Q ss_pred ccCCCCCCcCCCcc--cccceeecc
Q 001407 774 LEDCNMLRSLPELP--LCLQLLTVR 796 (1083)
Q Consensus 774 ls~n~~l~~lp~~~--~sL~~L~i~ 796 (1083)
|.+|.+...-|..+ ..|++|.+.
T Consensus 423 L~~NaiaSIq~nAFe~m~Lk~Lv~n 447 (873)
T KOG4194|consen 423 LGDNAIASIQPNAFEPMELKELVMN 447 (873)
T ss_pred CCCCcceeecccccccchhhhhhhc
Confidence 88887776666544 345555544
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=6.2e-29 Score=269.83 Aligned_cols=357 Identities=21% Similarity=0.290 Sum_probs=277.9
Q ss_pred ecCccccc-ccChhhhcCCCCCceEeeecCccccc-ccCCCCchhhccccceeecCC---CCCCCCCCCcEEEcCCCCCC
Q 001407 334 DLSKIKGI-NLDPRAFTNMSNLRLFKFYVPKFYEI-EKLPSMSTEEQLSYSKVQLPN---GLDYLPKKLRYLHWDTYPLR 408 (1083)
Q Consensus 334 ~ls~~~~~-~~~~~~f~~l~~Lr~L~l~~n~l~~i-~~l~~l~~l~~l~~~~~~l~~---~~~~~~~~L~~L~l~~~~l~ 408 (1083)
|+++|... .--|.....|+.++.|++....+..+ +.+..+.+|+++..+.+++.. .+..+ +.||.+.+..|.++
T Consensus 13 DfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~L-p~LRsv~~R~N~LK 91 (1255)
T KOG0444|consen 13 DFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDL-PRLRSVIVRDNNLK 91 (1255)
T ss_pred cccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccc-hhhHHHhhhccccc
Confidence 55555433 33466677899999999988877666 455666666666666655443 33333 46777777777776
Q ss_pred --CCCCC-CCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCcc
Q 001407 409 --TLPSN-FKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLI 485 (1083)
Q Consensus 409 --~lp~~-~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~ 485 (1083)
.+|.. |.+..|..||||+|+++.. |..+..-+++-+|+|++|+ +..+|..+ |.+
T Consensus 92 nsGiP~diF~l~dLt~lDLShNqL~Ev--------P~~LE~AKn~iVLNLS~N~-IetIPn~l------------fin-- 148 (1255)
T KOG0444|consen 92 NSGIPTDIFRLKDLTILDLSHNQLREV--------PTNLEYAKNSIVLNLSYNN-IETIPNSL------------FIN-- 148 (1255)
T ss_pred cCCCCchhcccccceeeecchhhhhhc--------chhhhhhcCcEEEEcccCc-cccCCchH------------HHh--
Confidence 46655 4777777888887777764 7777777777777777765 34444422 111
Q ss_pred ccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCc-CcccCchhhhhccc
Q 001407 486 EFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCL-NLEHFPEILEKMEH 564 (1083)
Q Consensus 486 ~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~-~~~~~p~~l~~l~~ 564 (1083)
...|-.|+|++|++..+|+.+..+.+|++|+|++|.+...--..+..+++|++|.+++.. -+..+|.++..+.+
T Consensus 149 -----LtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~N 223 (1255)
T KOG0444|consen 149 -----LTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHN 223 (1255)
T ss_pred -----hHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhh
Confidence 123457788999999999999999999999999998643222224467888999998864 34679999999999
Q ss_pred cCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCC
Q 001407 565 LKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCK 644 (1083)
Q Consensus 565 L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 644 (1083)
|..++++.|.+..+|+.+-++++|+.|++++|.++. +....+.-.+|++|+++.|+++.+|+.+..++.|+.|.+.+|+
T Consensus 224 L~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~Nk 302 (1255)
T KOG0444|consen 224 LRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNK 302 (1255)
T ss_pred hhhccccccCCCcchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCc
Confidence 999999999999999999999999999999998654 3445566789999999999999999999999999999999998
Q ss_pred CCCC-cCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCCCC
Q 001407 645 GLES-FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 721 (1083)
Q Consensus 645 ~~~~-~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 721 (1083)
+.-. +|. -++.+..|+.+..++|.+.-+|+.++.+..|+.|.|+.|.+.++|+.+.-++.|+.|++..|+.+.--|
T Consensus 303 L~FeGiPS-GIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPP 379 (1255)
T KOG0444|consen 303 LTFEGIPS-GIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPP 379 (1255)
T ss_pred ccccCCcc-chhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCC
Confidence 6533 333 367788899999999999999999999999999999999999999999999999999999998886444
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.94 E-value=6e-28 Score=261.27 Aligned_cols=353 Identities=20% Similarity=0.202 Sum_probs=206.3
Q ss_pred eeEEeecCcccccccChhhhcCCCCCceEeeecCcccccccCCCCch-hhccccceeecCC----CCCCCCCCCcEEEcC
Q 001407 329 EGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMST-EEQLSYSKVQLPN----GLDYLPKKLRYLHWD 403 (1083)
Q Consensus 329 ~~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~~l~~l~~-l~~l~~~~~~l~~----~~~~~~~~L~~L~l~ 403 (1083)
..-.||+++|+..+++...|.+++||+.+++.+|.++.|+.+..... ++.+....+.++. .+..+ +.||.|||+
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l-~alrslDLS 157 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSAL-PALRSLDLS 157 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhH-hhhhhhhhh
Confidence 33468999999999999999999999999999999887765554433 5555555554443 22222 467777777
Q ss_pred CCCCCCCCCC-C-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCC-CCC-CCCCcEEEec
Q 001407 404 TYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPS-NLH-FVCPVTINFS 479 (1083)
Q Consensus 404 ~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~-~~~-~~~L~~l~l~ 479 (1083)
.|.+.++|.. | .-.++++|+|++|.|+.+ -...|..+.+|.+|.|+.|.... +|. .++ ++
T Consensus 158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l-------~~~~F~~lnsL~tlkLsrNritt-Lp~r~Fk~L~-------- 221 (873)
T KOG4194|consen 158 RNLISEIPKPSFPAKVNIKKLNLASNRITTL-------ETGHFDSLNSLLTLKLSRNRITT-LPQRSFKRLP-------- 221 (873)
T ss_pred hchhhcccCCCCCCCCCceEEeecccccccc-------ccccccccchheeeecccCcccc-cCHHHhhhcc--------
Confidence 7777766654 3 335677777777777766 44566666667777776665332 222 111 22
Q ss_pred CCcCccccCCCcCCccEEEcCCcccccc-CccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchh
Q 001407 480 YCVNLIEFPQISGKVTRLYLGQSAIEEV-PSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEI 558 (1083)
Q Consensus 480 ~~~~l~~~~~~~~~L~~L~L~~~~l~~l-p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~ 558 (1083)
+|+.|+|..|.|..+ -..|..|++|+.|.|..|.+..--...|..+.++++|+|..|+....-..+
T Consensus 222 -------------~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~ 288 (873)
T KOG4194|consen 222 -------------KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGW 288 (873)
T ss_pred -------------hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhccc
Confidence 344444555555544 234455566666666665544333344555666666666665554444445
Q ss_pred hhhccccCeeccCCCCCCCC-CcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCc-hhhcccCcc
Q 001407 559 LEKMEHLKRIYSDRTPITEL-PSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS-SVALSNMLR 636 (1083)
Q Consensus 559 l~~l~~L~~L~l~~~~l~~l-p~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~ 636 (1083)
+.++++|+.|++++|.|..+ ++++...++|+.|+|+.|.+...-+..|..+..|++|++++|.+..+.. .+..+++|+
T Consensus 289 lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~ 368 (873)
T KOG4194|consen 289 LFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLH 368 (873)
T ss_pred ccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhh
Confidence 55566666666666666544 3334555566666666666555555556666666666666666655533 234556666
Q ss_pred EEEcCCCCCCCCcCc--ccccCCCCccEEEecCCCCCcCch-hccCCCCCcEEEeeCCCCcccc-hhhhCCCCCCEeecc
Q 001407 637 SLDSSHCKGLESFPR--TFLLGLSAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLE 712 (1083)
Q Consensus 637 ~L~l~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~ 712 (1083)
.|+|++|.+...+.. ..+.++++|+.|.+.+|++..+|. .+..+++|+.|||.+|.|.++. ..|..+ .|++|.+.
T Consensus 369 ~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 369 KLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMN 447 (873)
T ss_pred hhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhc
Confidence 666666654433222 124556666666666666665543 3555666666666666555442 444444 55555443
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=2.5e-29 Score=272.88 Aligned_cols=359 Identities=21% Similarity=0.283 Sum_probs=278.6
Q ss_pred CCCceEeeecCcccccccCCCCchhhccccceeecCCCCCCCCCCCcEEEcCCCCCCCCCCCC-CCCCceEEEcCCCccc
Q 001407 352 SNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVE 430 (1083)
Q Consensus 352 ~~Lr~L~l~~n~l~~i~~l~~l~~l~~l~~~~~~l~~~~~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~ 430 (1083)
+-.|-.++++|.++ .-.+|..+..+ +.+++|.|....+..+|... .+.+|++|.+.+|++.
T Consensus 7 pFVrGvDfsgNDFs-----------------g~~FP~~v~qM-t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~ 68 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFS-----------------GDRFPHDVEQM-TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI 68 (1255)
T ss_pred ceeecccccCCcCC-----------------CCcCchhHHHh-hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH
Confidence 33456677777653 34466666555 68999999999999999887 8899999999999988
Q ss_pred cccCCCccccCcccccCCCCcEEeccCCcCCc-ccCCC-CCCCCCcEEEecCCcCccccCCCc---CCccEEEcCCcccc
Q 001407 431 QPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSN-LHFVCPVTINFSYCVNLIEFPQIS---GKVTRLYLGQSAIE 505 (1083)
Q Consensus 431 ~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~-~lp~~-~~~~~L~~l~l~~~~~l~~~~~~~---~~L~~L~L~~~~l~ 505 (1083)
.+ ...+..|+.|+.+.+++|+.-. -+|.. +.+..|..++||++ .+++.|... .++-.|+|++|+|.
T Consensus 69 ~v--------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~Ie 139 (1255)
T KOG0444|consen 69 SV--------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIE 139 (1255)
T ss_pred hh--------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccc
Confidence 75 6778889999999998887432 35544 47778888888886 566776443 45678888899999
Q ss_pred ccCccc-cCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCC--CCCccc
Q 001407 506 EVPSSI-ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT--ELPSSF 582 (1083)
Q Consensus 506 ~lp~~i-~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~--~lp~~~ 582 (1083)
.||.++ .+++.|-+|||++|+ +..+|+.+..+..|++|.|++|.....--..+..|++|+.|.++++.-+ .+|.++
T Consensus 140 tIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl 218 (1255)
T KOG0444|consen 140 TIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL 218 (1255)
T ss_pred cCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence 888765 478888888998877 6788888888888999999888754433334456778888888887654 788888
Q ss_pred CCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccE
Q 001407 583 ENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGL 662 (1083)
Q Consensus 583 ~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 662 (1083)
..+.+|..++++.|+ +..+|+.+.++++|+.|++++|.|+++....+...+|++|+++.|++. .+|. ....++.|+.
T Consensus 219 d~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~-avcKL~kL~k 295 (1255)
T KOG0444|consen 219 DDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPD-AVCKLTKLTK 295 (1255)
T ss_pred hhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchH-HHhhhHHHHH
Confidence 888888888888775 456788888888888888888888888877777888888888888854 3343 2567788888
Q ss_pred EEecCCCCC--cCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCCCCC---CCCCccEEeecCCCC
Q 001407 663 LHISDYAVR--EIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKM 737 (1083)
Q Consensus 663 L~l~~~~l~--~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~ 737 (1083)
|.+.+|.+. .+|+.++.+.+|+.+..++|++.-+|++++.+..|+.|.|+.|.+. .+|+ +++.|+.|++.+|++
T Consensus 296 Ly~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 296 LYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred HHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence 888888776 4888888888888888888888888888888888888888876654 4563 557788888888887
Q ss_pred CCcCC
Q 001407 738 LQSLP 742 (1083)
Q Consensus 738 l~~l~ 742 (1083)
+.--|
T Consensus 375 LVMPP 379 (1255)
T KOG0444|consen 375 LVMPP 379 (1255)
T ss_pred ccCCC
Confidence 76444
No 10
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.7e-30 Score=267.90 Aligned_cols=432 Identities=22% Similarity=0.240 Sum_probs=307.1
Q ss_pred cCCCCCceEeeecCcccccccCCCCchhhccccceeecCCCCCCCCCCCcEEEcCCCCCCCCCCCC-CCCCceEEEcCCC
Q 001407 349 TNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCS 427 (1083)
Q Consensus 349 ~~l~~Lr~L~l~~n~l~~i~~l~~l~~l~~l~~~~~~l~~~~~~~~~~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n 427 (1083)
..-.-|..|.+++|.+.. +.+.+..+ ..|.+|..+.|.+..+|+.+ .+..++.|+.++|
T Consensus 42 W~qv~l~~lils~N~l~~-------------------l~~dl~nL-~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n 101 (565)
T KOG0472|consen 42 WEQVDLQKLILSHNDLEV-------------------LREDLKNL-ACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHN 101 (565)
T ss_pred hhhcchhhhhhccCchhh-------------------ccHhhhcc-cceeEEEeccchhhhCCHHHHHHHHHHHhhcccc
Confidence 334556778888876432 22333333 46788888888888888876 7888888888888
Q ss_pred ccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCC-CCCCCcEEEecCCcCccccCCCcC---CccEEEcCCcc
Q 001407 428 KVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLIEFPQISG---KVTRLYLGQSA 503 (1083)
Q Consensus 428 ~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~l~l~~~~~l~~~~~~~~---~L~~L~L~~~~ 503 (1083)
++..+ |..++.+.+|+.|+.+.|... ++|+.+ .+..+..++..++ ++..+|..+. ++..|++.+|.
T Consensus 102 ~ls~l--------p~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~ 171 (565)
T KOG0472|consen 102 KLSEL--------PEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNK 171 (565)
T ss_pred hHhhc--------cHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccc
Confidence 88875 888888888888888887744 444443 5556666665554 4555665544 34677888888
Q ss_pred ccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCCCCCcccC
Q 001407 504 IEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFE 583 (1083)
Q Consensus 504 l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~ 583 (1083)
++++|+..-+++.|++||...|- ++.+|..++.+.+|.-|++..|.+ ..+| .|.++..|++|+++.|.+..+|....
T Consensus 172 l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki-~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~ 248 (565)
T KOG0472|consen 172 LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI-RFLP-EFPGCSLLKELHVGENQIEMLPAEHL 248 (565)
T ss_pred hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc-ccCC-CCCccHHHHHHHhcccHHHhhHHHHh
Confidence 88888877778889999888864 788888898899999999988654 4566 67888888899999998888888755
Q ss_pred -CCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCC--------------
Q 001407 584 -NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLES-------------- 648 (1083)
Q Consensus 584 -~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~-------------- 648 (1083)
++++|..|++.+|+ ..+.|..+.-+.+|..|++++|.|+.+|.+++++ .|+.|-+.||.+.+.
T Consensus 249 ~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLK 326 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLK 326 (565)
T ss_pred cccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHH
Confidence 88899999998886 4677888888888999999999999999999888 888888888875110
Q ss_pred --------------------------cCcccccCCCCccEEEecCCCCCcCchhccCCCC---CcEEEeeCCCCcccchh
Q 001407 649 --------------------------FPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSS---LEILYLSGNNFESLPAI 699 (1083)
Q Consensus 649 --------------------------~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~---L~~L~Ls~n~l~~lp~~ 699 (1083)
.+........+.+.|++++-.++.+|........ ....+++.|++.++|..
T Consensus 327 yLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~ 406 (565)
T KOG0472|consen 327 YLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKR 406 (565)
T ss_pred HHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhh
Confidence 0000122345678888888888888887543333 78889999999999988
Q ss_pred hhCCCCCCEeeccCcccCCCCC---CCCCCccEEeecCCCCCCcCCCCCC---CCcEEeecCCCCCccCCCCCC---Ccc
Q 001407 700 IKQMSQLRFIHLEDFNMLQSLP---ELPLCLKYLHLIDCKMLQSLPVLPF---CLESLDLTGCNMLRSLPELPL---CLQ 770 (1083)
Q Consensus 700 l~~l~~L~~L~L~~~~~l~~lp---~~~~~L~~L~l~~c~~l~~l~~~~~---~L~~L~Ls~n~~~~~~~~~~~---~L~ 770 (1083)
+..+..+...-+..++....+| ..+++|..|++++|. +.++|.... .|+.|+++.|.+- .+|.... .|+
T Consensus 407 L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~-Ln~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lE 484 (565)
T KOG0472|consen 407 LVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNL-LNDLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLE 484 (565)
T ss_pred hHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccch-hhhcchhhhhhhhhheecccccccc-cchHHHhhHHHHH
Confidence 8777777666555666666555 334677778887664 555664332 4788888887542 3443222 233
Q ss_pred EEeccCCCCCCcCCCc----ccccceeecccccCcCcchhhhhccccchhhHH
Q 001407 771 YLNLEDCNMLRSLPEL----PLCLQLLTVRNCNRLQSLPEILLCLQELDASVL 819 (1083)
Q Consensus 771 ~L~ls~n~~l~~lp~~----~~sL~~L~i~~c~~l~~lp~~l~~L~~L~~l~l 819 (1083)
.+ ++.+..++.++.. +.+|..|++.+ +.+..+|..++++++|+.|++
T Consensus 485 tl-las~nqi~~vd~~~l~nm~nL~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL 535 (565)
T KOG0472|consen 485 TL-LASNNQIGSVDPSGLKNMRNLTTLDLQN-NDLQQIPPILGNMTNLRHLEL 535 (565)
T ss_pred HH-HhccccccccChHHhhhhhhcceeccCC-CchhhCChhhccccceeEEEe
Confidence 33 3443444444432 45677777754 567788888888888887766
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.93 E-value=2.3e-28 Score=253.68 Aligned_cols=436 Identities=20% Similarity=0.245 Sum_probs=295.3
Q ss_pred cEeeEEeecCcccccccChhhhcCCCCCceEeeecCcccccc-cCCCCchhhccc---cceeecCCCCCCCCCCCcEEEc
Q 001407 327 AIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-KLPSMSTEEQLS---YSKVQLPNGLDYLPKKLRYLHW 402 (1083)
Q Consensus 327 ~~~~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~-~l~~l~~l~~l~---~~~~~l~~~~~~~~~~L~~L~l 402 (1083)
.+.-..++++++....+ .....++..|.+|.+.+|.+..+. .+..+..+..+. .....+|+.+... .+|+.|+.
T Consensus 44 qv~l~~lils~N~l~~l-~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~-~~l~~l~~ 121 (565)
T KOG0472|consen 44 QVDLQKLILSHNDLEVL-REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSL-ISLVKLDC 121 (565)
T ss_pred hcchhhhhhccCchhhc-cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhh-hhhhhhhc
Confidence 34444556666654444 345677888888888888876652 333333333333 3344566666666 47888888
Q ss_pred CCCCCCCCCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCcEEEecCC
Q 001407 403 DTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYC 481 (1083)
Q Consensus 403 ~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~ 481 (1083)
+.|.++++|+.+ .+..|..|+..+|++..+ |+.+.++.+|..|++.+|+.....|..+.+..|++++...+
T Consensus 122 s~n~~~el~~~i~~~~~l~dl~~~~N~i~sl--------p~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N 193 (565)
T KOG0472|consen 122 SSNELKELPDSIGRLLDLEDLDATNNQISSL--------PEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN 193 (565)
T ss_pred cccceeecCchHHHHhhhhhhhccccccccC--------chHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh
Confidence 999998888886 788888999999998875 88888899999999988886665556667778888877554
Q ss_pred cCccccCCCcCCc---cEEEcCCccccccCccccCCCCCcEEEeeCCCCccccccccc-CCCCCcEEeccCCcCcccCch
Q 001407 482 VNLIEFPQISGKV---TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFC-KLRSLVTLILLGCLNLEHFPE 557 (1083)
Q Consensus 482 ~~l~~~~~~~~~L---~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~-~l~~L~~L~L~~~~~~~~~p~ 557 (1083)
.++.+|+.++.+ +.|+|..|.|..+| +|..+..|+.|.+..|. ++.+|...+ .+.+|.+||+.+| .++.+|+
T Consensus 194 -~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~-i~~lpae~~~~L~~l~vLDLRdN-klke~Pd 269 (565)
T KOG0472|consen 194 -LLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQ-IEMLPAEHLKHLNSLLVLDLRDN-KLKEVPD 269 (565)
T ss_pred -hhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccH-HHhhHHHHhcccccceeeecccc-ccccCch
Confidence 466777766655 44567888998888 88888888888888876 677887766 7888999999885 4677888
Q ss_pred hhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCc-------------------------------------
Q 001407 558 ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLD------------------------------------- 600 (1083)
Q Consensus 558 ~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~------------------------------------- 600 (1083)
.+..+.+|.+|++++|.++.+|.+++++ +|+.|.+.||++..
T Consensus 270 e~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 270 EICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 8888999999999999999999999988 89999888887310
Q ss_pred cCCC----CcCCCchhhhhhcccccccCCCchhhcccC---ccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcC
Q 001407 601 NLPD----NIGSLEYLYYILAAASAISQLPSSVALSNM---LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI 673 (1083)
Q Consensus 601 ~~p~----~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~---L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l 673 (1083)
..|. ....+.+.+.|++++-+++.+|..+..... ....++++|++.+ +|......-...+.+.+++|.+.-+
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~e-lPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCE-LPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhh-hhhhhHHHHHHHHHHHhhcCccccc
Confidence 0010 112345677888888888888887654333 6778888887432 3332111112233456666766667
Q ss_pred chhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCCCCCCC---CCccEEeecCCCCCCcCCCC----CC
Q 001407 674 PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPELP---LCLKYLHLIDCKMLQSLPVL----PF 746 (1083)
Q Consensus 674 p~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~~---~~L~~L~l~~c~~l~~l~~~----~~ 746 (1083)
|..++.+++|..|+|++|-+..+|..++.+..|+.|+|+.|.+ ..+|... ..++.+-++++ .+..++.. ..
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~n-qi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNN-QIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccc-cccccChHHhhhhh
Confidence 7777888888888888888888888888888888888888733 3344322 12222222222 23333321 22
Q ss_pred CCcEEeecCCCCCccCCC--CCCCccEEeccCCCCC
Q 001407 747 CLESLDLTGCNMLRSLPE--LPLCLQYLNLEDCNML 780 (1083)
Q Consensus 747 ~L~~L~Ls~n~~~~~~~~--~~~~L~~L~ls~n~~l 780 (1083)
+|.+||+.+|.+....|. .+.+|++|++++|++.
T Consensus 506 nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 456666655555433332 3445666666666655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.91 E-value=1.6e-26 Score=264.13 Aligned_cols=424 Identities=21% Similarity=0.228 Sum_probs=243.4
Q ss_pred eecCcccccccChhhhcCCCCCceEeeecCcccccc-cCCCCchhhccccceee---cCCCCCCCCCCCcEEEcCCCCCC
Q 001407 333 LDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-KLPSMSTEEQLSYSKVQ---LPNGLDYLPKKLRYLHWDTYPLR 408 (1083)
Q Consensus 333 l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~-~l~~l~~l~~l~~~~~~---l~~~~~~~~~~L~~L~l~~~~l~ 408 (1083)
++++.|-.....-+...+.-+|+.|++++|.+...+ .+..+..|..++.+.+. +|..... ..+|++|.|.+|.+.
T Consensus 26 ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~-~~~l~~lnL~~n~l~ 104 (1081)
T KOG0618|consen 26 LNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSN-MRNLQYLNLKNNRLQ 104 (1081)
T ss_pred hhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhh-hhcchhheeccchhh
Confidence 444444333333444555555888888887654431 12222222222222211 2211111 144555555555555
Q ss_pred CCCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCcccc
Q 001407 409 TLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEF 487 (1083)
Q Consensus 409 ~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~~~ 487 (1083)
.+|..+ .+++|++|++++|.+... |..+..+..+..+..++|..+..++.. ..+.+++..+.....+
T Consensus 105 ~lP~~~~~lknl~~LdlS~N~f~~~--------Pl~i~~lt~~~~~~~s~N~~~~~lg~~----~ik~~~l~~n~l~~~~ 172 (1081)
T KOG0618|consen 105 SLPASISELKNLQYLDLSFNHFGPI--------PLVIEVLTAEEELAASNNEKIQRLGQT----SIKKLDLRLNVLGGSF 172 (1081)
T ss_pred cCchhHHhhhcccccccchhccCCC--------chhHHhhhHHHHHhhhcchhhhhhccc----cchhhhhhhhhcccch
Confidence 555554 455555555555555442 444555555555555544222222221 2445555555555555
Q ss_pred CCCcCCccE-EEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccC
Q 001407 488 PQISGKVTR-LYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLK 566 (1083)
Q Consensus 488 ~~~~~~L~~-L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~ 566 (1083)
+.....++. |+|..|.+.. ..+.++.+|+.|....|++. .+- -..++|+.|+.+.|......+. ..-.+|+
T Consensus 173 ~~~i~~l~~~ldLr~N~~~~--~dls~~~~l~~l~c~rn~ls-~l~---~~g~~l~~L~a~~n~l~~~~~~--p~p~nl~ 244 (1081)
T KOG0618|consen 173 LIDIYNLTHQLDLRYNEMEV--LDLSNLANLEVLHCERNQLS-ELE---ISGPSLTALYADHNPLTTLDVH--PVPLNLQ 244 (1081)
T ss_pred hcchhhhheeeecccchhhh--hhhhhccchhhhhhhhcccc-eEE---ecCcchheeeeccCcceeeccc--cccccce
Confidence 555555655 7777777662 23455566666666655432 211 1346677777777666533221 2235677
Q ss_pred eeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCC
Q 001407 567 RIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGL 646 (1083)
Q Consensus 567 ~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~ 646 (1083)
+++++.|.+..+|++++.+.+|+.+....|.+ ..+|..+....+|+.|.+..|.+..+|+....+++|++|+|..|.+.
T Consensus 245 ~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 245 YLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred eeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc
Confidence 77888888888887777888888888777766 56666677777777777777777777777777777777777777642
Q ss_pred CCcCccc-------------------------ccCCCCccEEEecCCCCCc-CchhccCCCCCcEEEeeCCCCcccc-hh
Q 001407 647 ESFPRTF-------------------------LLGLSAMGLLHISDYAVRE-IPQEIAYLSSLEILYLSGNNFESLP-AI 699 (1083)
Q Consensus 647 ~~~~~~~-------------------------~~~~~~L~~L~l~~~~l~~-lp~~l~~l~~L~~L~Ls~n~l~~lp-~~ 699 (1083)
. +|... -..++.|+.|++.+|.+++ .-+.+.++..|+.|+|++|++.++| ..
T Consensus 324 ~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~ 402 (1081)
T KOG0618|consen 324 S-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASK 402 (1081)
T ss_pred c-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHH
Confidence 2 22111 1234456667777777665 2334667777888888888887777 34
Q ss_pred hhCCCCCCEeeccCcccCCCCCC---CCCCccEEeecCCCCCCcCCCC--CCCCcEEeecCCCCCc-cCCC-CC-CCccE
Q 001407 700 IKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPVL--PFCLESLDLTGCNMLR-SLPE-LP-LCLQY 771 (1083)
Q Consensus 700 l~~l~~L~~L~L~~~~~l~~lp~---~~~~L~~L~l~~c~~l~~l~~~--~~~L~~L~Ls~n~~~~-~~~~-~~-~~L~~ 771 (1083)
+.+++.|++|+|++|++ +.+|. ..+.|++|...+|. +..+|.. .+.|+.+|+|.|++.. .+|. .+ ++|++
T Consensus 403 ~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ahsN~-l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 403 LRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAHSNQ-LLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred HhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhcCCc-eeechhhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 57777888888887653 44553 23456666655544 3445532 3367888888887754 3443 34 57888
Q ss_pred EeccCCCCCC
Q 001407 772 LNLEDCNMLR 781 (1083)
Q Consensus 772 L~ls~n~~l~ 781 (1083)
||+++|..+.
T Consensus 481 LdlSGN~~l~ 490 (1081)
T KOG0618|consen 481 LDLSGNTRLV 490 (1081)
T ss_pred eeccCCcccc
Confidence 8888887543
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.91 E-value=5e-23 Score=265.70 Aligned_cols=341 Identities=25% Similarity=0.387 Sum_probs=238.2
Q ss_pred CCCCceEEEcCCCccccccCCCccccCcccccCC-CCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCccccCCCcCC
Q 001407 415 KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFK-YLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFPQISGK 493 (1083)
Q Consensus 415 ~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~-~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~~~~~~~~~ 493 (1083)
.+.+|+.|.+.++..... ......+|..|..++ +|+.|++.++. ++.+|..+... +
T Consensus 556 ~m~~L~~L~~~~~~~~~~-~~~~~~lp~~~~~lp~~Lr~L~~~~~~-l~~lP~~f~~~---------------------~ 612 (1153)
T PLN03210 556 GMRNLLFLKFYTKKWDQK-KEVRWHLPEGFDYLPPKLRLLRWDKYP-LRCMPSNFRPE---------------------N 612 (1153)
T ss_pred cCccccEEEEeccccccc-ccceeecCcchhhcCcccEEEEecCCC-CCCCCCcCCcc---------------------C
Confidence 788888888876643211 001112577777764 68999988765 56677655333 4
Q ss_pred ccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCC
Q 001407 494 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 573 (1083)
Q Consensus 494 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~ 573 (1083)
|+.|++.++.+..+|.++..+++|+.|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|++++|
T Consensus 613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c 691 (1153)
T PLN03210 613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRC 691 (1153)
T ss_pred CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCC
Confidence 5666666677778888888899999999999888888886 888999999999999999999999999999999999985
Q ss_pred -CCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcc
Q 001407 574 -PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRT 652 (1083)
Q Consensus 574 -~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~ 652 (1083)
.++.+|..+ ++++|+.|++++|..++.+|.. ..+|+.|++++|.+..+|..+ .+++|+.|.+.++.... +..
T Consensus 692 ~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~-l~~- 764 (1153)
T PLN03210 692 ENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEK-LWE- 764 (1153)
T ss_pred CCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccccccccc-cccccccccccccchhh-ccc-
Confidence 677888866 7899999999999888777754 356788888999888888765 46777777776654211 000
Q ss_pred cccCCCCccEEEecCCCCCcC-chhccCCCCCcEEEeeCCC-CcccchhhhCCCCCCEeeccCcccCCCCCCC--CCCcc
Q 001407 653 FLLGLSAMGLLHISDYAVREI-PQEIAYLSSLEILYLSGNN-FESLPAIIKQMSQLRFIHLEDFNMLQSLPEL--PLCLK 728 (1083)
Q Consensus 653 ~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~~--~~~L~ 728 (1083)
.+..+ |.....+++|+.|+|++|. +..+|..++++++|+.|+|++|+.++.+|.. +++|+
T Consensus 765 ----------------~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~ 828 (1153)
T PLN03210 765 ----------------RVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLE 828 (1153)
T ss_pred ----------------cccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccC
Confidence 00111 1112335678888888874 4578888888888888888888877777743 45677
Q ss_pred EEeecCCCCCCcCCCCCCCCcEEeecCCCCCccCCC---CCCCccEEeccCCCCCCcCCCc---ccccceeecccccCcC
Q 001407 729 YLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQ 802 (1083)
Q Consensus 729 ~L~l~~c~~l~~l~~~~~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~ls~n~~l~~lp~~---~~sL~~L~i~~c~~l~ 802 (1083)
.|++++|..+..+|..+.+|+.|+|++|.+. .+|. .+++|+.|++++|+.+..+|.. +++|+.|++.+|.+++
T Consensus 829 ~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 829 SLDLSGCSRLRTFPDISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred EEECCCCCccccccccccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence 7777777766666666666666776666554 3342 2445666666666666555543 2445555566665544
Q ss_pred c
Q 001407 803 S 803 (1083)
Q Consensus 803 ~ 803 (1083)
.
T Consensus 908 ~ 908 (1153)
T PLN03210 908 E 908 (1153)
T ss_pred c
Confidence 3
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.86 E-value=1.5e-23 Score=240.08 Aligned_cols=384 Identities=21% Similarity=0.254 Sum_probs=260.4
Q ss_pred EeecCcccccccChhhhcCCCCCceEeeecCccccccc-CCCCchhhccccceeecCCCCCCCCCCCcEEEcCCCCCC-C
Q 001407 332 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEK-LPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLR-T 409 (1083)
Q Consensus 332 ~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~~-l~~l~~l~~l~~~~~~l~~~~~~~~~~L~~L~l~~~~l~-~ 409 (1083)
++.+..+ .....|..+..+++|++|++++|.+..++. +..+..+..+....+.....+... .++.+++..|.+. .
T Consensus 95 ~lnL~~n-~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~--~ik~~~l~~n~l~~~ 171 (1081)
T KOG0618|consen 95 YLNLKNN-RLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQT--SIKKLDLRLNVLGGS 171 (1081)
T ss_pred hheeccc-hhhcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccc--cchhhhhhhhhcccc
Confidence 3444443 344567788888999999999988877643 233333333333332111222222 2566666666654 4
Q ss_pred CCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCccccC
Q 001407 410 LPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIEFP 488 (1083)
Q Consensus 410 lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~~~~ 488 (1083)
++... .+.+ .|+|++|.+..+ .+.++.+|+.|....|.... + .+..++++.+..++|+..+..+
T Consensus 172 ~~~~i~~l~~--~ldLr~N~~~~~----------dls~~~~l~~l~c~rn~ls~-l--~~~g~~l~~L~a~~n~l~~~~~ 236 (1081)
T KOG0618|consen 172 FLIDIYNLTH--QLDLRYNEMEVL----------DLSNLANLEVLHCERNQLSE-L--EISGPSLTALYADHNPLTTLDV 236 (1081)
T ss_pred hhcchhhhhe--eeecccchhhhh----------hhhhccchhhhhhhhcccce-E--EecCcchheeeeccCcceeecc
Confidence 44443 4444 689999888633 56677777777776655322 1 1234567778888877665444
Q ss_pred CC-cCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCe
Q 001407 489 QI-SGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKR 567 (1083)
Q Consensus 489 ~~-~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~ 567 (1083)
.. ..++++++++.|.+..+|++++.+.+|+.|+..+|.+ ..+|..+....+|+.|.+..|. ++.+|...+.+++|++
T Consensus 237 ~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~ne-l~yip~~le~~~sL~t 314 (1081)
T KOG0618|consen 237 HPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYNE-LEYIPPFLEGLKSLRT 314 (1081)
T ss_pred ccccccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhhh-hhhCCCcccccceeee
Confidence 33 3567888888888888888888888888888888774 7777778788888888887754 5567777778888888
Q ss_pred eccCCCCCCCCCcccCC-CC-CCcEEeccCCCCCccCCCCcCCCchhhhhhccccccc-CCCchhhcccCccEEEcCCCC
Q 001407 568 IYSDRTPITELPSSFEN-LP-GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAIS-QLPSSVALSNMLRSLDSSHCK 644 (1083)
Q Consensus 568 L~l~~~~l~~lp~~~~~-l~-~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~l~~~~ 644 (1083)
|++..|.+..+|+.+-. +. +|..|..+.|.+.......=..++.|+.|++.+|.++ ..-+.+.++.+|+.|+|++|.
T Consensus 315 LdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr 394 (1081)
T KOG0618|consen 315 LDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR 394 (1081)
T ss_pred eeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccc
Confidence 88888888888875322 22 3566666555543322222235677888888888887 445556777888888888887
Q ss_pred CCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCC-CC-C
Q 001407 645 GLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQS-LP-E 722 (1083)
Q Consensus 645 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~-lp-~ 722 (1083)
+..+|...+..++.|+.|++|+|.++.+|..+..++.|++|...+|++..+| .+..++.|+.+|++.|++... +| .
T Consensus 395 -L~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 395 -LNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEA 472 (1081)
T ss_pred -cccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhh
Confidence 4567777778888888888888888888888888888888888888888888 678888888888887766432 33 2
Q ss_pred CC-CCccEEeecCCCC
Q 001407 723 LP-LCLKYLHLIDCKM 737 (1083)
Q Consensus 723 ~~-~~L~~L~l~~c~~ 737 (1083)
.| ++|++|++++|..
T Consensus 473 ~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 473 LPSPNLKYLDLSGNTR 488 (1081)
T ss_pred CCCcccceeeccCCcc
Confidence 34 6778888877764
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.79 E-value=8.9e-19 Score=209.07 Aligned_cols=262 Identities=21% Similarity=0.237 Sum_probs=160.7
Q ss_pred CCCcEEEcCCCCCCCCCCCCCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCc
Q 001407 395 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 474 (1083)
Q Consensus 395 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~ 474 (1083)
..-..|+++++.++++|..+. .+|+.|++++|+++.+ |. .+++|++|++++|. ++.+|.. ..+|+
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~-~~L~~L~L~~N~Lt~L--------P~---lp~~Lk~LdLs~N~-LtsLP~l--p~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP-AHITTLVIPDNNLTSL--------PA---LPPELRTLEVSGNQ-LTSLPVL--PPGLL 265 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh-cCCCEEEccCCcCCCC--------CC---CCCCCcEEEecCCc-cCcccCc--ccccc
Confidence 345678899999999988763 4789999999988875 43 24678888887774 3344432 23444
Q ss_pred EEEecCCcCccccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCccc
Q 001407 475 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 554 (1083)
Q Consensus 475 ~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 554 (1083)
.|+++++ .+..+|....+|+.|++++|.++.+|.. +++|+.|++++|.+.+
T Consensus 266 ~L~Ls~N-~L~~Lp~lp~~L~~L~Ls~N~Lt~LP~~---------------------------p~~L~~LdLS~N~L~~- 316 (788)
T PRK15387 266 ELSIFSN-PLTHLPALPSGLCKLWIFGNQLTSLPVL---------------------------PPGLQELSVSDNQLAS- 316 (788)
T ss_pred eeeccCC-chhhhhhchhhcCEEECcCCcccccccc---------------------------ccccceeECCCCcccc-
Confidence 4444443 2333444334444444444444444431 2345555555443322
Q ss_pred CchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccC
Q 001407 555 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 634 (1083)
Q Consensus 555 ~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 634 (1083)
+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|++.. +|.. ..+|+.|++++|.+..+|.. ..+
T Consensus 317 Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~ 383 (788)
T PRK15387 317 LPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTSLPAL---PSG 383 (788)
T ss_pred CCCC---cccccccccccCcccccccc---ccccceEecCCCccCC-CCCC---CcccceehhhccccccCccc---ccc
Confidence 2321 12344555555555555531 1356666666655442 3332 23455566666666666643 246
Q ss_pred ccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCc
Q 001407 635 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDF 714 (1083)
Q Consensus 635 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~ 714 (1083)
|+.|++++|.+.. +|. ..++|+.|++++|.+..+|.. +.+|+.|++++|+++.+|..+.++++|+.|+|++|
T Consensus 384 L~~LdLs~N~Lt~-LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTS-LPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccC-CCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeEECCCC
Confidence 7778887777543 332 235788888888888888753 35678888999999989988888899999999988
Q ss_pred ccCCCCC
Q 001407 715 NMLQSLP 721 (1083)
Q Consensus 715 ~~l~~lp 721 (1083)
++....+
T Consensus 456 ~Ls~~~~ 462 (788)
T PRK15387 456 PLSERTL 462 (788)
T ss_pred CCCchHH
Confidence 8776544
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.78 E-value=1.2e-18 Score=208.09 Aligned_cols=255 Identities=27% Similarity=0.368 Sum_probs=128.8
Q ss_pred EEEecCCcCccccCC-CcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcc
Q 001407 475 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 553 (1083)
Q Consensus 475 ~l~l~~~~~l~~~~~-~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 553 (1083)
.|+++.+ .++.+|. ...+++.|++.+|.++.+|.. +++|++|++++|. +..+|.. .++|+.|++++|.+ .
T Consensus 205 ~LdLs~~-~LtsLP~~l~~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~l---p~sL~~L~Ls~N~L-~ 275 (788)
T PRK15387 205 VLNVGES-GLTTLPDCLPAHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPVL---PPGLLELSIFSNPL-T 275 (788)
T ss_pred EEEcCCC-CCCcCCcchhcCCCEEEccCCcCCCCCCC---CCCCcEEEecCCc-cCcccCc---ccccceeeccCCch-h
Confidence 5666665 4555554 234566666666666666642 4566666666665 3345542 34666666666543 2
Q ss_pred cCchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhccc
Q 001407 554 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 633 (1083)
Q Consensus 554 ~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~ 633 (1083)
.+|.. .++|+.|++++|.++.+|.. +++|+.|++++|.+.+ +|... .+|+.|++++|.+..+|.. ..
T Consensus 276 ~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp---~~L~~L~Ls~N~L~~LP~l---p~ 342 (788)
T PRK15387 276 HLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALP---SELCKLWAYNNQLTSLPTL---PS 342 (788)
T ss_pred hhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCCc---ccccccccccCcccccccc---cc
Confidence 34432 23455666666666666542 3456666666655443 33211 2344455555555544431 12
Q ss_pred CccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccC
Q 001407 634 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 713 (1083)
Q Consensus 634 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 713 (1083)
+|+. |++++|.+..+|.. .++|+.|++++|.++.+|.. .++|+.|++++
T Consensus 343 ~Lq~-------------------------LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~ 391 (788)
T PRK15387 343 GLQE-------------------------LSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL---PSGLKELIVSG 391 (788)
T ss_pred ccce-------------------------EecCCCccCCCCCC---CcccceehhhccccccCccc---ccccceEEecC
Confidence 3444 44444444444431 23444445555555444432 13444555554
Q ss_pred cccCCCCCCCCCCccEEeecCCCCCCcCCCCCCCCcEEeecCCCCCccCCC---CCCCccEEeccCCCCCCcCCC
Q 001407 714 FNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLPE---LPLCLQYLNLEDCNMLRSLPE 785 (1083)
Q Consensus 714 ~~~l~~lp~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~Ls~n~~~~~~~~---~~~~L~~L~ls~n~~l~~lp~ 785 (1083)
|++. .+|..+++|+.|++++|. +..+|..+.+|+.|++++|++. .+|. .+++|+.|++++|++.+..+.
T Consensus 392 N~Lt-~LP~l~s~L~~LdLS~N~-LssIP~l~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 392 NRLT-SLPVLPSELKELMVSGNR-LTSLPMLPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred Cccc-CCCCcccCCCEEEccCCc-CCCCCcchhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 4332 344444455555555543 3334444445555666665554 3443 234566666766666655544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2e-17 Score=199.14 Aligned_cols=247 Identities=23% Similarity=0.345 Sum_probs=150.2
Q ss_pred CCCcEEEcCCCCCCCCCCCCCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCc
Q 001407 395 KKLRYLHWDTYPLRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 474 (1083)
Q Consensus 395 ~~L~~L~l~~~~l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~ 474 (1083)
.+...|+++++.++++|..+ +++|+.|+|++|+|+.+ |..+. ++|++|++++|. +..+|..+
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I-p~~L~~L~Ls~N~LtsL--------P~~l~--~nL~~L~Ls~N~-LtsLP~~l------ 239 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI-PEQITTLILDNNELKSL--------PENLQ--GNIKTLYANSNQ-LTSIPATL------ 239 (754)
T ss_pred cCceEEEeCCCCcCcCCccc-ccCCcEEEecCCCCCcC--------Chhhc--cCCCEEECCCCc-cccCChhh------
Confidence 45678899999999888765 45789999999988875 54443 478888888765 33444321
Q ss_pred EEEecCCcCccccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCccc
Q 001407 475 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 554 (1083)
Q Consensus 475 ~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 554 (1083)
..+|+.|+|++|.+..+|..+. .+|+.|++++|++ ..+|..+. ++|+.|++++|.+. .
T Consensus 240 ----------------~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls~N~Lt-~ 297 (754)
T PRK15370 240 ----------------PDTIQEMELSINRITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVYDNSIR-T 297 (754)
T ss_pred ----------------hccccEEECcCCccCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECCCCccc-c
Confidence 1246677777777777776654 4677788877653 45666543 46777777776543 3
Q ss_pred CchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccC
Q 001407 555 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNM 634 (1083)
Q Consensus 555 ~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~ 634 (1083)
+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+ +.+|..+. ++
T Consensus 298 LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L------------------------t~LP~~l~--~s 347 (754)
T PRK15370 298 LPAHLP--SGITHLNVQSNSLTALPETLP--PGLKTLEAGENAL------------------------TSLPASLP--PE 347 (754)
T ss_pred Ccccch--hhHHHHHhcCCccccCCcccc--ccceeccccCCcc------------------------ccCChhhc--Cc
Confidence 444332 356667777777776665432 4555555555543 33333221 34
Q ss_pred ccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhh----hCCCCCCEee
Q 001407 635 LRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAII----KQMSQLRFIH 710 (1083)
Q Consensus 635 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l----~~l~~L~~L~ 710 (1083)
|+.|++++|.+. .+|... .+.|+.|++++|.+..+|..+. .+|+.|++++|+++.+|..+ ..++++..|+
T Consensus 348 L~~L~Ls~N~L~-~LP~~l---p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~ 421 (754)
T PRK15370 348 LQVLDVSKNQIT-VLPETL---PPTITTLDVSRNALTNLPENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRII 421 (754)
T ss_pred ccEEECCCCCCC-cCChhh---cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEE
Confidence 555555555432 223211 2456666666666666665543 35777777777777666443 2346666777
Q ss_pred ccCcccC
Q 001407 711 LEDFNML 717 (1083)
Q Consensus 711 L~~~~~l 717 (1083)
+.+|++.
T Consensus 422 L~~Npls 428 (754)
T PRK15370 422 VEYNPFS 428 (754)
T ss_pred eeCCCcc
Confidence 7766653
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.69 E-value=2.1e-16 Score=190.40 Aligned_cols=223 Identities=19% Similarity=0.335 Sum_probs=160.3
Q ss_pred EEEecCCcCccccCC-CcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcc
Q 001407 475 TINFSYCVNLIEFPQ-ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE 553 (1083)
Q Consensus 475 ~l~l~~~~~l~~~~~-~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~ 553 (1083)
.|++++. .++.+|. ....++.|+|++|.|+.+|..+. ++|+.|++++|. +..+|..+. .+|+.|++++|.+.
T Consensus 182 ~L~L~~~-~LtsLP~~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N~L~- 254 (754)
T PRK15370 182 ELRLKIL-GLTTIPACIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSINRIT- 254 (754)
T ss_pred EEEeCCC-CcCcCCcccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCCccC-
Confidence 3444333 3344443 33567888888889998887764 589999999887 456776553 47899999998755
Q ss_pred cCchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhccc
Q 001407 554 HFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSN 633 (1083)
Q Consensus 554 ~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~ 633 (1083)
.+|..+. .+|+.|++++|.++.+|..+. ++|+.|++++|.+. .+|..+. ++|+.|++++|.+..+|..+. +
T Consensus 255 ~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP~~l~--~ 325 (754)
T PRK15370 255 ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALPETLP--P 325 (754)
T ss_pred cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCCcccc--c
Confidence 6776654 579999999999998888664 58999999998765 3555443 478899999999888876543 6
Q ss_pred CccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccC
Q 001407 634 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLED 713 (1083)
Q Consensus 634 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 713 (1083)
+|+.|++++|.+.. +|... .++|+.|++++|.+..+|..+ .++|+.|+|++|+++.+|..+. .+|+.|++++
T Consensus 326 sL~~L~Ls~N~Lt~-LP~~l---~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~ 397 (754)
T PRK15370 326 GLKTLEAGENALTS-LPASL---PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQIMQASR 397 (754)
T ss_pred cceeccccCCcccc-CChhh---cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhcc
Confidence 78888888887543 44322 357888888888887777655 3678888888888888876554 3677778877
Q ss_pred cccCCCCCC
Q 001407 714 FNMLQSLPE 722 (1083)
Q Consensus 714 ~~~l~~lp~ 722 (1083)
|++. .+|.
T Consensus 398 N~L~-~LP~ 405 (754)
T PRK15370 398 NNLV-RLPE 405 (754)
T ss_pred CCcc-cCch
Confidence 7654 4443
No 19
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-18 Score=181.05 Aligned_cols=268 Identities=19% Similarity=0.195 Sum_probs=135.6
Q ss_pred cCCCCCCCCCCCcEEEcCCCCCCCCCCC-C-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcc
Q 001407 386 LPNGLDYLPKKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRS 463 (1083)
Q Consensus 386 l~~~~~~~~~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~ 463 (1083)
+.+....+|..-..+.|+.|.|++||+. | .+++|+.|||++|+|+.+ -|.+|..++.|..|-+.++
T Consensus 58 L~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I-------~p~AF~GL~~l~~Lvlyg~----- 125 (498)
T KOG4237|consen 58 LTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFI-------APDAFKGLASLLSLVLYGN----- 125 (498)
T ss_pred cccCcccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhc-------ChHhhhhhHhhhHHHhhcC-----
Confidence 3334445566677777777777777765 4 677777777777777776 6666766666555544443
Q ss_pred cCCCCCCCCCcEEEecCCcCccccCCCcCCccEEEcCCccccccCc-cccCCCCCcEEEeeCCCCcccccccccCCCCCc
Q 001407 464 FPSNLHFVCPVTINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPS-SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLV 542 (1083)
Q Consensus 464 lp~~~~~~~L~~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~-~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~ 542 (1083)
|+|+.+|. .++.|..|+.|.+.-|++.-.....|..+++|.
T Consensus 126 --------------------------------------NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 126 --------------------------------------NKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred --------------------------------------CchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 33444442 345566666666666665444445556666666
Q ss_pred EEeccCCcCcccCch-hhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhccccc
Q 001407 543 TLILLGCLNLEHFPE-ILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASA 621 (1083)
Q Consensus 543 ~L~L~~~~~~~~~p~-~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 621 (1083)
.|.+.+|... .++. .+..+..++++.+..|.+... .+++.+.. .....|-.++......-..+.+..
T Consensus 168 lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd----CnL~wla~-------~~a~~~ietsgarc~~p~rl~~~R 235 (498)
T KOG4237|consen 168 LLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD----CNLPWLAD-------DLAMNPIETSGARCVSPYRLYYKR 235 (498)
T ss_pred hhcccchhhh-hhccccccchhccchHhhhcCccccc----cccchhhh-------HHhhchhhcccceecchHHHHHHH
Confidence 6666554322 2222 455555555555555542210 01111000 001111122222222222222222
Q ss_pred ccC--------------------------CCc-hhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCc
Q 001407 622 ISQ--------------------------LPS-SVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP 674 (1083)
Q Consensus 622 i~~--------------------------lp~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp 674 (1083)
+.+ .|. .+..+++|+.|++++|.+. .+....|.+...++.|.|..|.+..+.
T Consensus 236 i~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~ 314 (498)
T KOG4237|consen 236 INQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVS 314 (498)
T ss_pred hcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHH
Confidence 222 221 2444555666666555533 233334555555556666555555543
Q ss_pred h-hccCCCCCcEEEeeCCCCccc-chhhhCCCCCCEeeccCccc
Q 001407 675 Q-EIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFIHLEDFNM 716 (1083)
Q Consensus 675 ~-~l~~l~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~L~~~~~ 716 (1083)
. .|.+++.|+.|+|.+|+|+.+ |..|..+.+|..|+|-.|++
T Consensus 315 ~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 315 SGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred HHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 2 245555566666666665533 34455555555555554443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.61 E-value=4e-17 Score=151.03 Aligned_cols=172 Identities=27% Similarity=0.407 Sum_probs=147.3
Q ss_pred CCCCCCCCCCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCcEEEecCCcCccc
Q 001407 407 LRTLPSNFKPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPVTINFSYCVNLIE 486 (1083)
Q Consensus 407 l~~lp~~~~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~~l~l~~~~~l~~ 486 (1083)
+..+|..|++.+.+.|.|++|+++.+ |+.+..+.+|+.|++.+
T Consensus 23 f~~~~gLf~~s~ITrLtLSHNKl~~v--------ppnia~l~nlevln~~n----------------------------- 65 (264)
T KOG0617|consen 23 FEELPGLFNMSNITRLTLSHNKLTVV--------PPNIAELKNLEVLNLSN----------------------------- 65 (264)
T ss_pred HhhcccccchhhhhhhhcccCceeec--------CCcHHHhhhhhhhhccc-----------------------------
Confidence 34667778888888888998888764 77777777777777655
Q ss_pred cCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcc-cCchhhhhcccc
Q 001407 487 FPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLE-HFPEILEKMEHL 565 (1083)
Q Consensus 487 ~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~-~~p~~l~~l~~L 565 (1083)
|.|+++|.+++.+++|+.|++.-|+ +..+|..|+.++.|+.||+..|+..+ .+|..|..|+.|
T Consensus 66 ---------------nqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tl 129 (264)
T KOG0617|consen 66 ---------------NQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTL 129 (264)
T ss_pred ---------------chhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHH
Confidence 4466778888889999999999876 67889999999999999999887654 578899999999
Q ss_pred CeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcc
Q 001407 566 KRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALS 632 (1083)
Q Consensus 566 ~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l 632 (1083)
+.|+++.|.+..+|..++++++|+.|.+.+|.+. .+|..++.++.|++|.+.+|.++-+|+.++.+
T Consensus 130 ralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~vlppel~~l 195 (264)
T KOG0617|consen 130 RALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLTVLPPELANL 195 (264)
T ss_pred HHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceeeecChhhhhh
Confidence 9999999999999999999999999999999765 57889999999999999999999999887654
No 21
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-17 Score=174.63 Aligned_cols=123 Identities=16% Similarity=0.176 Sum_probs=81.9
Q ss_pred eEEeecCcccccccChhhhcCCCCCceEeeecCcccccc-----cCCCCchhhccc-cceeecCCCCCCCCCCCcEEEcC
Q 001407 330 GIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIE-----KLPSMSTEEQLS-YSKVQLPNGLDYLPKKLRYLHWD 403 (1083)
Q Consensus 330 ~i~l~ls~~~~~~~~~~~f~~l~~Lr~L~l~~n~l~~i~-----~l~~l~~l~~l~-~~~~~l~~~~~~~~~~L~~L~l~ 403 (1083)
...+++..|.+..+.+.+|+.+++||.|++++|.++.|. +++++..+.... +....+|.+.+.-...|+.|.+.
T Consensus 69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllN 148 (498)
T KOG4237|consen 69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLN 148 (498)
T ss_pred ceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcC
Confidence 346777788899999999999999999999999988772 334444444444 33445666665555666666666
Q ss_pred CCCCCCCCCC-C-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCc
Q 001407 404 TYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 459 (1083)
Q Consensus 404 ~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~ 459 (1083)
-|.+..++.. | .+++|..|.+..|.++.+ -..+|..+..++.+.+..|.
T Consensus 149 an~i~Cir~~al~dL~~l~lLslyDn~~q~i-------~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 149 ANHINCIRQDALRDLPSLSLLSLYDNKIQSI-------CKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred hhhhcchhHHHHHHhhhcchhcccchhhhhh-------ccccccchhccchHhhhcCc
Confidence 6666666554 3 666666666666666654 12256666666666665554
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.54 E-value=4.7e-16 Score=143.99 Aligned_cols=162 Identities=23% Similarity=0.361 Sum_probs=103.1
Q ss_pred CCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEec
Q 001407 514 LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFV 593 (1083)
Q Consensus 514 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l 593 (1083)
+.+.+.|.|++|+ +..+|..+..+.+|+.|++++| .++.+|..+..+++|+.|+++-|++..+|..|+.++.|+.|++
T Consensus 32 ~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nn-qie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 32 MSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNN-QIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred hhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccc-hhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 3344444444443 2333333444444444444432 2334444555555555555556666677888888888888888
Q ss_pred cCCCCC-ccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCc
Q 001407 594 EDCSKL-DNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVRE 672 (1083)
Q Consensus 594 ~~~~~~-~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 672 (1083)
..|++. ..+|..|..++.|+.|++++|.+.-+|..++.+++|+.|.+..| .+.+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn-------------------------dll~ 164 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN-------------------------DLLS 164 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC-------------------------chhh
Confidence 877765 45788888888888888888888888877776666655555444 3445
Q ss_pred CchhccCCCCCcEEEeeCCCCcccchhhhC
Q 001407 673 IPQEIAYLSSLEILYLSGNNFESLPAIIKQ 702 (1083)
Q Consensus 673 lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~~ 702 (1083)
+|..++.+..|++|++.+|+++.+|..+++
T Consensus 165 lpkeig~lt~lrelhiqgnrl~vlppel~~ 194 (264)
T KOG0617|consen 165 LPKEIGDLTRLRELHIQGNRLTVLPPELAN 194 (264)
T ss_pred CcHHHHHHHHHHHHhcccceeeecChhhhh
Confidence 677777777777777777777777765544
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.48 E-value=2.6e-15 Score=168.94 Aligned_cols=205 Identities=16% Similarity=0.105 Sum_probs=85.5
Q ss_pred cccCCCCCcEEEeeCCCCcccccccccCCCC---CcEEeccCCcCcc----cCchhhhhc-cccCeeccCCCCCC-----
Q 001407 510 SIECLTDLEVLDLRGCKRLKRISTSFCKLRS---LVTLILLGCLNLE----HFPEILEKM-EHLKRIYSDRTPIT----- 576 (1083)
Q Consensus 510 ~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~---L~~L~L~~~~~~~----~~p~~l~~l-~~L~~L~l~~~~l~----- 576 (1083)
.+..+++|+.|++++|.+....+..+..+.+ |++|++++|...+ .+...+..+ ++|+.|++++|.++
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 3344445555555555443333333333322 5555555544331 112223333 44455555555444
Q ss_pred CCCcccCCCCCCcEEeccCCCCCcc----CCCCcCCCchhhhhhcccccccC-----CCchhhcccCccEEEcCCCCCCC
Q 001407 577 ELPSSFENLPGLEVLFVEDCSKLDN----LPDNIGSLEYLYYILAAASAISQ-----LPSSVALSNMLRSLDSSHCKGLE 647 (1083)
Q Consensus 577 ~lp~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~ 647 (1083)
.++..+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|.+.. +...+..+++|+.|++++|.+..
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 2222333444555555555544321 11122222344444444443321 12223344556666666555332
Q ss_pred CcCcccc----cCCCCccEEEecCCCCCc-----CchhccCCCCCcEEEeeCCCCccc-----chhhhCC-CCCCEeecc
Q 001407 648 SFPRTFL----LGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFESL-----PAIIKQM-SQLRFIHLE 712 (1083)
Q Consensus 648 ~~~~~~~----~~~~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~~l-----p~~l~~l-~~L~~L~L~ 712 (1083)
....... .....|+.|++++|.++. +...+..+++|+++++++|.++.- ...+... +.|+.|++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 1111111 112455555555555541 223334445566666666655522 2222333 455555555
Q ss_pred Cc
Q 001407 713 DF 714 (1083)
Q Consensus 713 ~~ 714 (1083)
++
T Consensus 316 ~~ 317 (319)
T cd00116 316 DD 317 (319)
T ss_pred CC
Confidence 44
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.42 E-value=2.7e-14 Score=160.71 Aligned_cols=225 Identities=18% Similarity=0.152 Sum_probs=127.2
Q ss_pred CccEEEcCCcccc-----ccCccccCCCCCcEEEeeCCCCc------ccccccccCCCCCcEEeccCCcCcccCchhhhh
Q 001407 493 KVTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRL------KRISTSFCKLRSLVTLILLGCLNLEHFPEILEK 561 (1083)
Q Consensus 493 ~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~------~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~ 561 (1083)
.+++|+++++.++ .++..+...++|++|+++++... ..++..+..+++|+.|++++|......+..+..
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 3667777666663 45666677778888888887644 223445667778888888888777666666666
Q ss_pred ccc---cCeeccCCCCCCC-----CCcccCCC-CCCcEEeccCCCCCcc----CCCCcCCCchhhhhhcccccccC----
Q 001407 562 MEH---LKRIYSDRTPITE-----LPSSFENL-PGLEVLFVEDCSKLDN----LPDNIGSLEYLYYILAAASAISQ---- 624 (1083)
Q Consensus 562 l~~---L~~L~l~~~~l~~-----lp~~~~~l-~~L~~L~l~~~~~~~~----~p~~l~~l~~L~~L~l~~~~i~~---- 624 (1083)
+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+.+. ++..+..+++|++|++++|.+..
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 655 8888888877762 23344555 7788888888776632 23334455556666666665552
Q ss_pred -CCchhhcccCccEEEcCCCCCCCCcCc---ccccCCCCccEEEecCCCCCcC-chhc-----cCCCCCcEEEeeCCCCc
Q 001407 625 -LPSSVALSNMLRSLDSSHCKGLESFPR---TFLLGLSAMGLLHISDYAVREI-PQEI-----AYLSSLEILYLSGNNFE 694 (1083)
Q Consensus 625 -lp~~~~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~l~~l-p~~l-----~~l~~L~~L~Ls~n~l~ 694 (1083)
++..+..+++|+.|++++|.+.+.... ..+..+++|+.|++++|.++.. ...+ ...+.|++|++++|.++
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCC
Confidence 222333344666666666654322111 1133445555555555555431 1111 01245555555555553
Q ss_pred -----ccchhhhCCCCCCEeeccCcccC
Q 001407 695 -----SLPAIIKQMSQLRFIHLEDFNML 717 (1083)
Q Consensus 695 -----~lp~~l~~l~~L~~L~L~~~~~l 717 (1083)
.+...+..+++|+++++++|.+.
T Consensus 264 ~~~~~~l~~~~~~~~~L~~l~l~~N~l~ 291 (319)
T cd00116 264 DDGAKDLAEVLAEKESLLELDLRGNKFG 291 (319)
T ss_pred cHHHHHHHHHHhcCCCccEEECCCCCCc
Confidence 22333444455555555555443
No 25
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.30 E-value=6.4e-11 Score=153.08 Aligned_cols=277 Identities=14% Similarity=0.156 Sum_probs=169.0
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc-----------
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE----------- 71 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~----------- 71 (1083)
.....+++.|.|++|.||||++..+..+. ..++|+. +.+.. .+...+...++..+......
T Consensus 28 ~~~~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~-l~~~d---~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~ 99 (903)
T PRK04841 28 GANNYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS-LDESD---NQPERFASYLIAALQQATNGHCSKSEALAQK 99 (903)
T ss_pred cccCCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe-cCccc---CCHHHHHHHHHHHHHHhcCcccchhhhhhcc
Confidence 34567999999999999999999988642 3688885 43322 22233333444333211100
Q ss_pred cCCCCc---hHHHHHHhc--CceeEEEEeCCCChH--HHH-HHhhccCCCCCCcEEEEEecchhHHh--hhccccccEEE
Q 001407 72 VAGPNI---PHFTKERVR--RMKLLIVLDDVNEVG--QLK-RLIGELDQFGQGSRIVVTTRDKRVLE--KFRGEEKKIYR 141 (1083)
Q Consensus 72 ~~~~~~---~~~~~~~l~--~kr~LlVlDdv~~~~--~~~-~l~~~~~~~~~gsrIiiTTR~~~v~~--~~~~~~~~~~~ 141 (1083)
...... ...+...+. +.+++||+||+...+ .+. .+..-+....++.++|||||...-.. .... .....+
T Consensus 100 ~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~-~~~~~~ 178 (903)
T PRK04841 100 RQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRV-RDQLLE 178 (903)
T ss_pred CCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHh-cCccee
Confidence 000111 122222232 578999999997642 122 22222222346778999999842111 1110 233456
Q ss_pred ec----CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHhhhcCcchh
Q 001407 142 VN----GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNRICESEIH 217 (1083)
Q Consensus 142 v~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~~~~~~~~~ 217 (1083)
+. +|+.+|+.++|....... -..+.+.++.+.++|.|+++..++..+...... .......+......
T Consensus 179 l~~~~l~f~~~e~~~ll~~~~~~~-----~~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~--- 249 (903)
T PRK04841 179 IGSQQLAFDHQEAQQFFDQRLSSP-----IEAAESSRLCDDVEGWATALQLIALSARQNNSS-LHDSARRLAGINAS--- 249 (903)
T ss_pred cCHHhCCCCHHHHHHHHHhccCCC-----CCHHHHHHHHHHhCChHHHHHHHHHHHhhCCCc-hhhhhHhhcCCCch---
Confidence 66 999999999998654221 123446889999999999999998776543210 11111122111111
Q ss_pred hHHhHhh-hcccCCCccccceEEEEeeccCCCChhHHHHHHhhh-hHhhhHHHhhccceEEe----CCEEEeeHHHHHHH
Q 001407 218 DIYDILK-ISFNKLTPRVKSIFLDIACFFEGEDKDFVASILDDS-ESDVLDILIDKSLVSIS----GNFLNMHDILQEMG 291 (1083)
Q Consensus 218 ~i~~~l~-~Sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~-~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~ 291 (1083)
.+...+. -.++.||+..++.++..|+++ .+..+.+..+.+.. +...++.|.+.+++... ..+|++|++++++.
T Consensus 250 ~~~~~l~~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l 328 (903)
T PRK04841 250 HLSDYLVEEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTGEENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFL 328 (903)
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcCCCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHH
Confidence 2344433 347899999999999999986 55566555555433 77889999999996542 23799999999999
Q ss_pred HHHHhhc
Q 001407 292 RQIVRQE 298 (1083)
Q Consensus 292 ~~~~~~~ 298 (1083)
+.....+
T Consensus 329 ~~~l~~~ 335 (903)
T PRK04841 329 RHRCQWE 335 (903)
T ss_pred HHHHHhc
Confidence 9887543
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.24 E-value=7.7e-12 Score=153.61 Aligned_cols=247 Identities=25% Similarity=0.304 Sum_probs=162.8
Q ss_pred CCccEEEcCCccccccCccccCCCCCcEEEeeCCCC-cccccc-cccCCCCCcEEeccCCcCcccCchhhhhccccCeec
Q 001407 492 GKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKR-LKRIST-SFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 569 (1083)
Q Consensus 492 ~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~-~~~lp~-~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 569 (1083)
...+...+-+|.+..++....+ ++|++|-+.+|.. ...++. .|..++.|+.|||++|...+.+|+.++.+-+|++|+
T Consensus 523 ~~~rr~s~~~~~~~~~~~~~~~-~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHIAGSSEN-PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred hheeEEEEeccchhhccCCCCC-CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 3557777778888877766554 3788888888862 344444 367799999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCC---CchhhcccCccEEEcCCCCCC
Q 001407 570 SDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL---PSSVALSNMLRSLDSSHCKGL 646 (1083)
Q Consensus 570 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~l~~~~~~ 646 (1083)
++++.+..+|.++++|+.|.+|++..+.....+|.....|++|++|.+.......- -..+..+.+|+.+.......
T Consensus 602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~- 680 (889)
T KOG4658|consen 602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV- 680 (889)
T ss_pred ccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-
Confidence 99999999999999999999999998888777777777789999988766653222 22234455555555543332
Q ss_pred CCcCcccccCCCCc----cEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccch-h-----hh-CCCCCCEeeccCcc
Q 001407 647 ESFPRTFLLGLSAM----GLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPA-I-----IK-QMSQLRFIHLEDFN 715 (1083)
Q Consensus 647 ~~~~~~~~~~~~~L----~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~-~-----l~-~l~~L~~L~L~~~~ 715 (1083)
.+. ..+..+..| +.+.+.++.....+..+..+.+|+.|.+.++.+.+... + .. .++++..+.+.+|.
T Consensus 681 -~~~-e~l~~~~~L~~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 681 -LLL-EDLLGMTRLRSLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred -HhH-hhhhhhHHHHHHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 000 001112222 22333334444456667777888888888877753321 1 01 13455555555665
Q ss_pred cCCCCC--CCCCCccEEeecCCCCCCcCC
Q 001407 716 MLQSLP--ELPLCLKYLHLIDCKMLQSLP 742 (1083)
Q Consensus 716 ~l~~lp--~~~~~L~~L~l~~c~~l~~l~ 742 (1083)
....+. ..+++|+.|.+..|..++.+.
T Consensus 759 ~~r~l~~~~f~~~L~~l~l~~~~~~e~~i 787 (889)
T KOG4658|consen 759 MLRDLTWLLFAPHLTSLSLVSCRLLEDII 787 (889)
T ss_pred cccccchhhccCcccEEEEecccccccCC
Confidence 554444 345677777777776665543
No 27
>PF05729 NACHT: NACHT domain
Probab=99.09 E-value=8.1e-10 Score=111.01 Aligned_cols=142 Identities=19% Similarity=0.352 Sum_probs=87.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC------ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 81 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~ 81 (1083)
|++.|.|.+|+||||++++++.++.... ...+|+. .+..... .....+...+............ ..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~-----~~~ 73 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDS-NNSRSLADLLFDQLPESIAPIE-----ELL 73 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhc-cccchHHHHHHHhhccchhhhH-----HHH
Confidence 6899999999999999999998765443 3444443 4333322 1112344433333222111111 112
Q ss_pred HH-HhcCceeEEEEeCCCChHH---------HHHHhhccCC--CCCCcEEEEEecchhHHh---hhccccccEEEecCCC
Q 001407 82 KE-RVRRMKLLIVLDDVNEVGQ---------LKRLIGELDQ--FGQGSRIVVTTRDKRVLE---KFRGEEKKIYRVNGLE 146 (1083)
Q Consensus 82 ~~-~l~~kr~LlVlDdv~~~~~---------~~~l~~~~~~--~~~gsrIiiTTR~~~v~~---~~~~~~~~~~~v~~L~ 146 (1083)
.. ..+.++++||+|++++... +..++..+.. ..++.+|+||+|...... ... ....+++.+|+
T Consensus 74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~--~~~~~~l~~~~ 151 (166)
T PF05729_consen 74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLK--QAQILELEPFS 151 (166)
T ss_pred HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcC--CCcEEEECCCC
Confidence 22 2256799999999876543 2222322222 257899999999987622 232 44679999999
Q ss_pred HHHHHHHHHHhh
Q 001407 147 FEEAFEHFCNFA 158 (1083)
Q Consensus 147 ~~ea~~Lf~~~a 158 (1083)
+++..+++.++.
T Consensus 152 ~~~~~~~~~~~f 163 (166)
T PF05729_consen 152 EEDIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999997764
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=8.6e-11 Score=125.67 Aligned_cols=205 Identities=18% Similarity=0.178 Sum_probs=136.4
Q ss_pred cCCCCCcEEEeeCCCCccccc--ccccCCCCCcEEeccCCcCcccC--chhhhhccccCeeccCCCCCCCCCcc--cCCC
Q 001407 512 ECLTDLEVLDLRGCKRLKRIS--TSFCKLRSLVTLILLGCLNLEHF--PEILEKMEHLKRIYSDRTPITELPSS--FENL 585 (1083)
Q Consensus 512 ~~l~~L~~L~L~~~~~~~~lp--~~l~~l~~L~~L~L~~~~~~~~~--p~~l~~l~~L~~L~l~~~~l~~lp~~--~~~l 585 (1083)
.++.+|+...|.++. .+..+ .....+++++.|+|++|-+.... -.....+++|+.|+++.|.+...-++ -..+
T Consensus 118 sn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL 196 (505)
T ss_pred hhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence 457778888888765 34433 24556888888888887544432 34567788888888888887744333 2356
Q ss_pred CCCcEEeccCCCCCcc-CCCCcCCCchhhhhhccccc-ccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEE
Q 001407 586 PGLEVLFVEDCSKLDN-LPDNIGSLEYLYYILAAASA-ISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLL 663 (1083)
Q Consensus 586 ~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~-i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 663 (1083)
++|+.|.++.|.+... +-..+..+++|+.|++..|. +..-.....-+..|+.|+|++|.+...-.......++.|+.|
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~L 276 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQL 276 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhh
Confidence 7888888888887632 22334567788888888884 222222334456788888888887766555556778888888
Q ss_pred EecCCCCCcC--chh-----ccCCCCCcEEEeeCCCCcccc--hhhhCCCCCCEeeccCcccC
Q 001407 664 HISDYAVREI--PQE-----IAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNML 717 (1083)
Q Consensus 664 ~l~~~~l~~l--p~~-----l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l 717 (1083)
+++.|.+.++ |+. ...+++|++|++..|++...+ ..+..+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 8888887763 433 345788888888888886555 34556666777766655443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.02 E-value=5.7e-11 Score=130.73 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=131.1
Q ss_pred EEcCCccccccCcccc--CCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCC
Q 001407 497 LYLGQSAIEEVPSSIE--CLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTP 574 (1083)
Q Consensus 497 L~L~~~~l~~lp~~i~--~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~ 574 (1083)
|.|++-.++.+|..-. .+.--...||+.|+ ...+|..++.+..|+.|.|..|. ...+|..+.++..|.+|+++.|.
T Consensus 55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR-~~elp~~~~~f~~Le~liLy~n~-~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNR-FSELPEEACAFVSLESLILYHNC-IRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccchhhcCCCccccccccchhhhhccccc-cccCchHHHHHHHHHHHHHHhcc-ceecchhhhhhhHHHHhhhccch
Confidence 4445555555553222 23444556677766 45667767777777777776643 44567777777777788888888
Q ss_pred CCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccc
Q 001407 575 ITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFL 654 (1083)
Q Consensus 575 l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 654 (1083)
+..+|..++.|+ |+.|-+++|+ .+.+|..++.+..|..|+.+.|.+..+|+.++.+.+|+.|.+..|.+.. +|....
T Consensus 133 lS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~-lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLED-LPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhh-CCHHHh
Confidence 887777777665 7777776664 4566777777778888888888888888877777777777776666332 222211
Q ss_pred cCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccchhhh---CCCCCCEeeccCc
Q 001407 655 LGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLPAIIK---QMSQLRFIHLEDF 714 (1083)
Q Consensus 655 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp~~l~---~l~~L~~L~L~~~ 714 (1083)
.-.|..||+++|++..+|-.|..|..|++|-|.+|.+.+-|..+. ...=-++|+..-|
T Consensus 210 --~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 210 --SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred --CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 223455556666666666666666666666666666665554332 2222344555444
No 30
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.97 E-value=1.9e-08 Score=109.97 Aligned_cols=180 Identities=16% Similarity=0.143 Sum_probs=106.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH--
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER-- 84 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~-- 84 (1083)
.+++.|+|++|+||||+|+++++.....=...+++.+ .. .+..++...+...++..............+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~-----~~-~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVN-----TR-VDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeC-----CC-CCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 4589999999999999999999986532112223321 11 344566666766654332211111111223222
Q ss_pred ---hcCceeEEEEeCCCChH--HHHHHhhccC---CCCCCcEEEEEecchhHHhhh--------ccccccEEEecCCCHH
Q 001407 85 ---VRRMKLLIVLDDVNEVG--QLKRLIGELD---QFGQGSRIVVTTRDKRVLEKF--------RGEEKKIYRVNGLEFE 148 (1083)
Q Consensus 85 ---l~~kr~LlVlDdv~~~~--~~~~l~~~~~---~~~~gsrIiiTTR~~~v~~~~--------~~~~~~~~~v~~L~~~ 148 (1083)
..+++.++|+||++... .++.+..-.. .......|++|.... +.... .......+++++++.+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 25678899999998754 3454432111 112233456666543 22111 1113456889999999
Q ss_pred HHHHHHHHhhcCCC--CCCchhHHHHHHHHHhhCCCchhHHHHhhhh
Q 001407 149 EAFEHFCNFAFKEN--HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 193 (1083)
Q Consensus 149 ea~~Lf~~~a~~~~--~~~~~~~~l~~~i~~~~~glPLal~~l~~~L 193 (1083)
|..+++...+.... ....-..+..+.|++.++|.|..+..++..+
T Consensus 196 e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 99999987653221 1111234678999999999999998888765
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.95 E-value=9.9e-10 Score=127.28 Aligned_cols=154 Identities=29% Similarity=0.369 Sum_probs=91.7
Q ss_pred CccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCC
Q 001407 493 KVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 572 (1083)
Q Consensus 493 ~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 572 (1083)
+++.|++++|.+..+|..++.+++|+.|++++|+ +..+|...+.+++|+.|++++|. +..+|.....+..|++|.+++
T Consensus 141 nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~ 218 (394)
T COG4886 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSN 218 (394)
T ss_pred hcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc-cccCchhhhhhhhhhhhhhcC
Confidence 3445555555555555556666666666666665 44555544456666666666643 334555545555566666666
Q ss_pred CCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcC
Q 001407 573 TPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFP 650 (1083)
Q Consensus 573 ~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 650 (1083)
|.+..++..+.++.++..+.+.+|.... ++..++.+++++.|++++|.+..++. ++.+.+++.|+++++......+
T Consensus 219 N~~~~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 219 NSIIELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred CcceecchhhhhcccccccccCCceeee-ccchhccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 6655556666666666666655554322 24555666666677777777776666 6666677777777766554433
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=1.2e-09 Score=126.63 Aligned_cols=197 Identities=28% Similarity=0.394 Sum_probs=123.5
Q ss_pred EEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhcc-ccCeeccCCCCCCCCCcccCCCCCCcEEeccCCC
Q 001407 519 VLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKME-HLKRIYSDRTPITELPSSFENLPGLEVLFVEDCS 597 (1083)
Q Consensus 519 ~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~-~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~ 597 (1083)
.+++..+...... ..+..++.++.|++.++. ...+|.....+. +|+.|++++|.+..+|..++.+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~-~~~~~~~~l~~L~l~~n~-i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNI-SELLELTNLTSLDLDNNN-ITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCc-hhhhcccceeEEecCCcc-cccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 3455544432222 223344555666665533 233444444443 6666666666666666566666666666666665
Q ss_pred CCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhc
Q 001407 598 KLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI 677 (1083)
Q Consensus 598 ~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l 677 (1083)
+.. +|...+.++.|+.|++++|.+..+|..+.....|+.|.+++|....... ....+..+..+.+.+|.+..++..+
T Consensus 175 l~~-l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~--~~~~~~~l~~l~l~~n~~~~~~~~~ 251 (394)
T COG4886 175 LSD-LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLS--SLSNLKNLSGLELSNNKLEDLPESI 251 (394)
T ss_pred hhh-hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecch--hhhhcccccccccCCceeeeccchh
Confidence 433 3333336666777777777777777666566667777777774222211 1445566666667777777777778
Q ss_pred cCCCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCCCC
Q 001407 678 AYLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLP 721 (1083)
Q Consensus 678 ~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp 721 (1083)
+.+++|+.|++++|.++.++. ++.+.+|+.|+++++......|
T Consensus 252 ~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 252 GNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccceecccccccccccc-ccccCccCEEeccCccccccch
Confidence 888888888888888888876 8888888888888887766555
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.90 E-value=3.9e-10 Score=114.32 Aligned_cols=108 Identities=22% Similarity=0.208 Sum_probs=89.5
Q ss_pred CcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCc
Q 001407 605 NIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLE 684 (1083)
Q Consensus 605 ~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~ 684 (1083)
.+...+.|+++++++|.|+.+..++...+.++.|++++|.+...-. +..+++|+.|++++|.++++..|-..+-+++
T Consensus 279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIK 355 (490)
T KOG1259|consen 279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAECVGWHLKLGNIK 355 (490)
T ss_pred ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh---hhhcccceEeecccchhHhhhhhHhhhcCEe
Confidence 3445578999999999999999999999999999999998654322 5678889999999998888887777888899
Q ss_pred EEEeeCCCCcccchhhhCCCCCCEeeccCccc
Q 001407 685 ILYLSGNNFESLPAIIKQMSQLRFIHLEDFNM 716 (1083)
Q Consensus 685 ~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~ 716 (1083)
+|.|++|.+.++. +++.+.+|..||+++|++
T Consensus 356 tL~La~N~iE~LS-GL~KLYSLvnLDl~~N~I 386 (490)
T KOG1259|consen 356 TLKLAQNKIETLS-GLRKLYSLVNLDLSSNQI 386 (490)
T ss_pred eeehhhhhHhhhh-hhHhhhhheeccccccch
Confidence 9999999888776 578888888888888765
No 34
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.86 E-value=1.2e-08 Score=118.74 Aligned_cols=275 Identities=14% Similarity=0.182 Sum_probs=170.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcccccc----------
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEV---------- 72 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~---------- 72 (1083)
...+.|.+.|..++|.||||++.++.... ..-..+.|+..-.+.+ +.....+.++..+.......
T Consensus 33 ~~~~~RL~li~APAGfGKttl~aq~~~~~-~~~~~v~Wlslde~dn----dp~rF~~yLi~al~~~~p~~~~~a~~l~q~ 107 (894)
T COG2909 33 RANDYRLILISAPAGFGKTTLLAQWRELA-ADGAAVAWLSLDESDN----DPARFLSYLIAALQQATPTLGDEAQTLLQK 107 (894)
T ss_pred cCCCceEEEEeCCCCCcHHHHHHHHHHhc-CcccceeEeecCCccC----CHHHHHHHHHHHHHHhCccccHHHHHHHHh
Confidence 34578999999999999999999998843 4446788987443332 33444444444433211110
Q ss_pred ----CCCCchHHHHHHhc--CceeEEEEeCCCChH------HHHHHhhccCCCCCCcEEEEEecchh---HHhhhccccc
Q 001407 73 ----AGPNIPHFTKERVR--RMKLLIVLDDVNEVG------QLKRLIGELDQFGQGSRIVVTTRDKR---VLEKFRGEEK 137 (1083)
Q Consensus 73 ----~~~~~~~~~~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gsrIiiTTR~~~---v~~~~~~~~~ 137 (1083)
+...+...+...+. .++.++||||..-.. .++.+... ..++-..|||||.+- ++...- .+
T Consensus 108 ~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRl--r~ 182 (894)
T COG2909 108 HQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRL--RD 182 (894)
T ss_pred cccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceee--hh
Confidence 00112233333232 247899999974332 24455544 457899999999873 222211 23
Q ss_pred cEEEec----CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCC-CHHHHHHHHHHHhhhc
Q 001407 138 KIYRVN----GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-RKSHWGKVLHDLNRIC 212 (1083)
Q Consensus 138 ~~~~v~----~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~-~~~~w~~~l~~l~~~~ 212 (1083)
...++. .|+.+|+-++|..... .+- ...-++.+.+...|-+-|+..++=.+++. +.+.-...+....+..
T Consensus 183 ~llEi~~~~Lrf~~eE~~~fl~~~~~---l~L--d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~LsG~~~~l 257 (894)
T COG2909 183 ELLEIGSEELRFDTEEAAAFLNDRGS---LPL--DAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGLSGAASHL 257 (894)
T ss_pred hHHhcChHhhcCChHHHHHHHHHcCC---CCC--ChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhccchHHHH
Confidence 334443 5899999999987641 111 12337889999999999999988777632 3333222222111111
Q ss_pred CcchhhHHhHhhhcccCCCccccceEEEEeeccCCCChhHHHHHHhhh-hHhhhHHHhhccceEEe----CCEEEeeHHH
Q 001407 213 ESEIHDIYDILKISFNKLTPRVKSIFLDIACFFEGEDKDFVASILDDS-ESDVLDILIDKSLVSIS----GNFLNMHDIL 287 (1083)
Q Consensus 213 ~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~-~~~~l~~L~~~sLi~~~----~~~~~mHdll 287 (1083)
. .-...--+|.||++.|..++-+|++.. +.-+.+.++.+.. ....++.|..++|+-+. +++|+.|.++
T Consensus 258 ~------dYL~eeVld~Lp~~l~~FLl~~svl~~-f~~eL~~~Ltg~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LF 330 (894)
T COG2909 258 S------DYLVEEVLDRLPPELRDFLLQTSVLSR-FNDELCNALTGEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLF 330 (894)
T ss_pred H------HHHHHHHHhcCCHHHHHHHHHHHhHHH-hhHHHHHHHhcCCcHHHHHHHHHhCCCceeeecCCCceeehhHHH
Confidence 0 112233468899999988888887743 2223333333322 66779999999998765 7789999999
Q ss_pred HHHHHHHHhhcc
Q 001407 288 QEMGRQIVRQES 299 (1083)
Q Consensus 288 ~~~~~~~~~~~~ 299 (1083)
.+|-+...+.+-
T Consensus 331 aeFL~~r~~~~~ 342 (894)
T COG2909 331 AEFLRQRLQREL 342 (894)
T ss_pred HHHHHhhhcccc
Confidence 999998877643
No 35
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.83 E-value=8.6e-09 Score=113.57 Aligned_cols=163 Identities=24% Similarity=0.388 Sum_probs=69.4
Q ss_pred CCCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccCCCCCC-CCCCccEEeecCCCCCCcCCCCCCCCcEEeecCCCC
Q 001407 680 LSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNMLQSLPE-LPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNM 758 (1083)
Q Consensus 680 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp~-~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~Ls~n~~ 758 (1083)
+.+++.|++++|.++.+|. -.++|+.|.+++|..+..+|+ +|++|++|.+.+|..+..+| .+|+.|+++++..
T Consensus 51 ~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~n~~ 124 (426)
T PRK15386 51 ARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKGSAT 124 (426)
T ss_pred hcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCCCCC
Confidence 3444444454444444441 122355555555544444442 33445555555554443332 3344455443222
Q ss_pred CccCCCCCCCccEEeccCCCCC--CcCC-CcccccceeecccccCcCcchhhhhccccchhhHHhhhhcCCCCCccCccc
Q 001407 759 LRSLPELPLCLQYLNLEDCNML--RSLP-ELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPES 835 (1083)
Q Consensus 759 ~~~~~~~~~~L~~L~ls~n~~l--~~lp-~~~~sL~~L~i~~c~~l~~lp~~l~~L~~L~~l~l~~l~~~~~~l~~~p~~ 835 (1083)
..++.+|++|+.|.+.+++.. ..+| .+|++|+.|.+.+|..+. +|+.+. .+|+.|.++. ..|-.++.....
T Consensus 125 -~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~-LP~~LP--~SLk~L~ls~--n~~~sLeI~~~s 198 (426)
T PRK15386 125 -DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNII-LPEKLP--ESLQSITLHI--EQKTTWNISFEG 198 (426)
T ss_pred -cccccCcchHhheeccccccccccccccccCCcccEEEecCCCccc-Cccccc--ccCcEEEecc--cccccccCcccc
Confidence 223344444555554332211 1122 133455555555554332 222111 1222222210 011122222234
Q ss_pred cccccceeeecCcccccccc
Q 001407 836 LKSAAICFEFTNCLKLNGKA 855 (1083)
Q Consensus 836 l~~~l~~l~i~~C~~L~~~~ 855 (1083)
++.++ .|.+.+|.+++.++
T Consensus 199 LP~nl-~L~f~n~lkL~~~~ 217 (426)
T PRK15386 199 FPDGL-DIDLQNSVLLSPDV 217 (426)
T ss_pred ccccc-EechhhhcccCHHH
Confidence 55556 79999998887554
No 36
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.81 E-value=1.6e-10 Score=127.29 Aligned_cols=171 Identities=23% Similarity=0.296 Sum_probs=125.9
Q ss_pred CCcEEEcCCCCCCCCCCCC-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCcCCcccCCCCCCCCCc
Q 001407 396 KLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVCPV 474 (1083)
Q Consensus 396 ~L~~L~l~~~~l~~lp~~~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~~l~~lp~~~~~~~L~ 474 (1083)
.-...+++.|.+..+|..+ .+..|+.|.|..|.+.. +|..+.++..|++|+|+.|. +..+|..+...-
T Consensus 76 dt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~--------ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-- 144 (722)
T KOG0532|consen 76 DTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRT--------IPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-- 144 (722)
T ss_pred chhhhhccccccccCchHHHHHHHHHHHHHHhcccee--------cchhhhhhhHHHHhhhccch-hhcCChhhhcCc--
Confidence 3456788899999999887 67788888898888876 48999999999999998876 444555443333
Q ss_pred EEEecCCcCccccCCCcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCccc
Q 001407 475 TINFSYCVNLIEFPQISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEH 554 (1083)
Q Consensus 475 ~l~l~~~~~l~~~~~~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~ 554 (1083)
|+.|-+++|+++.+|..++.+..|..||.+.|. +..+|..++.+.+|+.|.+..|.. ..
T Consensus 145 -------------------Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l-~~ 203 (722)
T KOG0532|consen 145 -------------------LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHL-ED 203 (722)
T ss_pred -------------------ceeEEEecCccccCCcccccchhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhh-hh
Confidence 355556667777777777777778888888776 566677777788888887777553 44
Q ss_pred CchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCC
Q 001407 555 FPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKL 599 (1083)
Q Consensus 555 ~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~ 599 (1083)
+|+.+..| .|..|++++|++..+|-.|.+|+.|++|.|.+|++.
T Consensus 204 lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 204 LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCC
Confidence 56555533 477778888888888877777778888777777653
No 37
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1e-09 Score=117.60 Aligned_cols=202 Identities=17% Similarity=0.149 Sum_probs=133.6
Q ss_pred CccEEEcCCccccccC--ccccCCCCCcEEEeeCCCCccc--ccccccCCCCCcEEeccCCcCcccCchh-hhhccccCe
Q 001407 493 KVTRLYLGQSAIEEVP--SSIECLTDLEVLDLRGCKRLKR--ISTSFCKLRSLVTLILLGCLNLEHFPEI-LEKMEHLKR 567 (1083)
Q Consensus 493 ~L~~L~L~~~~l~~lp--~~i~~l~~L~~L~L~~~~~~~~--lp~~l~~l~~L~~L~L~~~~~~~~~p~~-l~~l~~L~~ 567 (1083)
+|++..|.+..+...+ .....+++++.|||+.|-+... +-.....+++|+.|+|+.|.......+. -..+++|+.
T Consensus 122 kL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~ 201 (505)
T KOG3207|consen 122 KLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQ 201 (505)
T ss_pred hhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhhe
Confidence 4555566666665555 2456677788888877643322 1222356777888888776544322211 224677788
Q ss_pred eccCCCCCC--CCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCC--chhhcccCccEEEcCCC
Q 001407 568 IYSDRTPIT--ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLP--SSVALSNMLRSLDSSHC 643 (1083)
Q Consensus 568 L~l~~~~l~--~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp--~~~~~l~~L~~L~l~~~ 643 (1083)
|.++.|+++ ++-.....+|+|+.|++..|...........-+..|++|++++|.+-..+ ...+.++.|..|+++.|
T Consensus 202 L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t 281 (505)
T KOG3207|consen 202 LVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST 281 (505)
T ss_pred EEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcccc
Confidence 888888776 23333456788888888888643333334455678888888888887776 45677888888888887
Q ss_pred CCCCCcCccc-----ccCCCCccEEEecCCCCCcCch--hccCCCCCcEEEeeCCCCc
Q 001407 644 KGLESFPRTF-----LLGLSAMGLLHISDYAVREIPQ--EIAYLSSLEILYLSGNNFE 694 (1083)
Q Consensus 644 ~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~Ls~n~l~ 694 (1083)
.+........ ...+++|++|++..|++.+++. .+..+++|+.|.+..|.++
T Consensus 282 gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 282 GIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred CcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 7543221111 4578999999999999987654 4677888999988888776
No 38
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.79 E-value=3.6e-09 Score=107.47 Aligned_cols=134 Identities=19% Similarity=0.146 Sum_probs=105.0
Q ss_pred CcCCccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeec
Q 001407 490 ISGKVTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIY 569 (1083)
Q Consensus 490 ~~~~L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~ 569 (1083)
....|++|+|++|.|+.+..++.-++.++.|++++|.+... ..+..+++|+.|||++|... .+-..-.++-++++|.
T Consensus 282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred hHhhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 34567899999999999999999999999999999885433 23778999999999997643 3333445677888999
Q ss_pred cCCCCCCCCCcccCCCCCCcEEeccCCCCCcc-CCCCcCCCchhhhhhcccccccCCCc
Q 001407 570 SDRTPITELPSSFENLPGLEVLFVEDCSKLDN-LPDNIGSLEYLYYILAAASAISQLPS 627 (1083)
Q Consensus 570 l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~-~p~~l~~l~~L~~L~l~~~~i~~lp~ 627 (1083)
+++|.+..+. .++++-+|..|++++|++... --..+++++.|+++.+.+|.+..+++
T Consensus 359 La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 359 LAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 9999888765 377788899999999876532 23468889999999999988887764
No 39
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.78 E-value=6.2e-10 Score=116.22 Aligned_cols=225 Identities=16% Similarity=0.165 Sum_probs=143.1
Q ss_pred cCCccEEEcCCcccc-----ccCccccCCCCCcEEEeeCCCCcc----cccc-------cccCCCCCcEEeccCCcCccc
Q 001407 491 SGKVTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRLK----RIST-------SFCKLRSLVTLILLGCLNLEH 554 (1083)
Q Consensus 491 ~~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~----~lp~-------~l~~l~~L~~L~L~~~~~~~~ 554 (1083)
...+++|+|++|.+. .+...+.+.++|+..++++- +.+ .+|. .+-..+.|++|+||+|-+-..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~ 107 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK 107 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence 346678888888776 35556777788888888863 233 2332 344567899999998876655
Q ss_pred Cch----hhhhccccCeeccCCCCCCCCC--------------cccCCCCCCcEEeccCCCCCcc----CCCCcCCCchh
Q 001407 555 FPE----ILEKMEHLKRIYSDRTPITELP--------------SSFENLPGLEVLFVEDCSKLDN----LPDNIGSLEYL 612 (1083)
Q Consensus 555 ~p~----~l~~l~~L~~L~l~~~~l~~lp--------------~~~~~l~~L~~L~l~~~~~~~~----~p~~l~~l~~L 612 (1083)
.+. .+.++..|++|+|.+|.+...- .-+.+-+.|+++....|.+-.. +...+...+.|
T Consensus 108 g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l 187 (382)
T KOG1909|consen 108 GIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL 187 (382)
T ss_pred chHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence 443 3556788899999988876321 1234556788887777764321 22345556777
Q ss_pred hhhhcccccccC-----CCchhhcccCccEEEcCCCCCCCCcCcc---cccCCCCccEEEecCCCCCc-----Cchhc-c
Q 001407 613 YYILAAASAISQ-----LPSSVALSNMLRSLDSSHCKGLESFPRT---FLLGLSAMGLLHISDYAVRE-----IPQEI-A 678 (1083)
Q Consensus 613 ~~L~l~~~~i~~-----lp~~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~-----lp~~l-~ 678 (1083)
+.+.+..|.|.. +...+..+++|+.|+|..|.+...-... .+..+++|+.|++++|.+.. +-..+ .
T Consensus 188 eevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~ 267 (382)
T KOG1909|consen 188 EEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKE 267 (382)
T ss_pred ceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhc
Confidence 777777776652 2234566778888888877765432211 25556677777777777764 11122 3
Q ss_pred CCCCCcEEEeeCCCCc-----ccchhhhCCCCCCEeeccCccc
Q 001407 679 YLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIHLEDFNM 716 (1083)
Q Consensus 679 ~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~L~~~~~ 716 (1083)
..|+|+.|.+.+|.++ .+-..+...+.|+.|+|++|.+
T Consensus 268 ~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 268 SAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred cCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 4677777777777776 2334455577777777777765
No 40
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=98.77 E-value=2.8e-08 Score=110.64 Aligned_cols=248 Identities=17% Similarity=0.131 Sum_probs=132.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccc-cccCC-----CCchH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-LEVAG-----PNIPH 79 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-~~~~~-----~~~~~ 79 (1083)
..+.+.++|++|+|||+||++++++....+. +...... .....+... +..+.... .-++. .+...
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~----~~~~~~~----~~~~~l~~~-l~~~~~~~vl~iDEi~~l~~~~~e 99 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNLK----ITSGPAL----EKPGDLAAI-LTNLEEGDVLFIDEIHRLSPAVEE 99 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE----Eeccchh----cCchhHHHH-HHhcccCCEEEEehHhhhCHHHHH
Confidence 3566889999999999999999998754322 1111000 111112111 11111110 00010 01113
Q ss_pred HHHHHhcCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhc
Q 001407 80 FTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAF 159 (1083)
Q Consensus 80 ~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~ 159 (1083)
.+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...........+++++++.+|..+++.+.+.
T Consensus 100 ~l~~~~~~~~~~~v~~~~~~~~~~~~~------~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 100 LLYPAMEDFRLDIVIGKGPSARSVRLD------LPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred HhhHHHhhhheeeeeccCccccceeec------CCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 334444455555666655444443221 12355666777765554433221345689999999999999998875
Q ss_pred CCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHH-HHhhhcCcchhhHHhHhhhcccCCCccccceE
Q 001407 160 KENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLH-DLNRICESEIHDIYDILKISFNKLTPRVKSIF 238 (1083)
Q Consensus 160 ~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~-~l~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~f 238 (1083)
.... .-..+.+..|++.++|.|-.+..++..+ |..+.. .-..............+...|.++++.++..+
T Consensus 174 ~~~~--~~~~~al~~ia~~~~G~pR~~~~ll~~~-------~~~a~~~~~~~it~~~v~~~l~~l~~~~~~l~~~~~~~L 244 (305)
T TIGR00635 174 LLNV--EIEPEAALEIARRSRGTPRIANRLLRRV-------RDFAQVRGQKIINRDIALKALEMLMIDELGLDEIDRKLL 244 (305)
T ss_pred HhCC--CcCHHHHHHHHHHhCCCcchHHHHHHHH-------HHHHHHcCCCCcCHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence 3322 1224557889999999996554444322 111100 00001111112223335667788888777655
Q ss_pred E-EEeeccC-CCChhHHHHHHhhh---hHhhhH-HHhhccceEEe
Q 001407 239 L-DIACFFE-GEDKDFVASILDDS---ESDVLD-ILIDKSLVSIS 277 (1083)
Q Consensus 239 l-~~a~f~~-~~~~~~~~~~l~~~---~~~~l~-~L~~~sLi~~~ 277 (1083)
. .++.+.. +...+.+...+... ++..++ .|++++||+..
T Consensus 245 ~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~ 289 (305)
T TIGR00635 245 SVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRT 289 (305)
T ss_pred HHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccC
Confidence 4 3344433 24455566655443 667788 69999999754
No 41
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.70 E-value=1.1e-08 Score=101.05 Aligned_cols=125 Identities=18% Similarity=0.184 Sum_probs=38.8
Q ss_pred ccccCeeccCCCCCCCCCcccC-CCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchh-hcccCccEEE
Q 001407 562 MEHLKRIYSDRTPITELPSSFE-NLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV-ALSNMLRSLD 639 (1083)
Q Consensus 562 l~~L~~L~l~~~~l~~lp~~~~-~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~L~ 639 (1083)
..++++|++++|.|+.+.. ++ .+.+|+.|++++|.+... ..+..++.|+.|++++|.++.+...+ ..+++|+.|+
T Consensus 18 ~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELY 94 (175)
T ss_dssp ------------------S---TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE
T ss_pred ccccccccccccccccccc-hhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEE
Confidence 3345666666666665542 33 456666666666655432 13455566666666666666665443 2455666666
Q ss_pred cCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccc----hhhhCCCCCCEeecc
Q 001407 640 SSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP----AIIKQMSQLRFIHLE 712 (1083)
Q Consensus 640 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~ 712 (1083)
+++|.+..--.. ..+..+++|+.|+|.+|.++.-+ ..+..+|+|+.||-.
T Consensus 95 L~~N~I~~l~~l-----------------------~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 95 LSNNKISDLNEL-----------------------EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -TTS---SCCCC-----------------------GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred CcCCcCCChHHh-----------------------HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence 665553321111 23455667777777777666444 235667777777654
No 42
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=98.70 E-value=6.4e-08 Score=108.35 Aligned_cols=250 Identities=17% Similarity=0.139 Sum_probs=131.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccc-cccCCCC-----ch
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-LEVAGPN-----IP 78 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-~~~~~~~-----~~ 78 (1083)
...+.+.|+|++|+|||++|+.+++.....+. +.. ... ... ...+ ..++..+.... .-++..+ ..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~---~~~-~~~-~~~---~~~l-~~~l~~l~~~~vl~IDEi~~l~~~~~ 119 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR---ITS-GPA-LEK---PGDL-AAILTNLEEGDVLFIDEIHRLSPVVE 119 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE---EEe-ccc-ccC---hHHH-HHHHHhcccCCEEEEecHhhcchHHH
Confidence 34567899999999999999999998754322 111 110 011 1111 11122111100 0000000 11
Q ss_pred HHHHHHhcCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHHHHHHHhh
Q 001407 79 HFTKERVRRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..+...+.+.+..+|+|+..+..++... ..+.+-|..|||...+...........++++.+++++..+++.+.+
T Consensus 120 e~l~~~~e~~~~~~~l~~~~~~~~~~~~------l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~ 193 (328)
T PRK00080 120 EILYPAMEDFRLDIMIGKGPAARSIRLD------LPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSA 193 (328)
T ss_pred HHHHHHHHhcceeeeeccCccccceeec------CCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 2222333334444444444333322110 1224556667775544443321133568999999999999999887
Q ss_pred cCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHhhhcCcchhhHHhHhhhcccCCCccccceE
Q 001407 159 FKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIF 238 (1083)
Q Consensus 159 ~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~f 238 (1083)
...... -..+.+..|++.|+|.|-.+..+...+ ..|.... .-.......+......+...+.+|++..+..+
T Consensus 194 ~~~~~~--~~~~~~~~ia~~~~G~pR~a~~~l~~~-----~~~a~~~-~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l 265 (328)
T PRK00080 194 RILGVE--IDEEGALEIARRSRGTPRIANRLLRRV-----RDFAQVK-GDGVITKEIADKALDMLGVDELGLDEMDRKYL 265 (328)
T ss_pred HHcCCC--cCHHHHHHHHHHcCCCchHHHHHHHHH-----HHHHHHc-CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHH
Confidence 543322 223568899999999995444333221 1121110 00011111122334556777788888777766
Q ss_pred E-EEeeccC-CCChhHHHHHHhhh---hHhhhH-HHhhccceEEe
Q 001407 239 L-DIACFFE-GEDKDFVASILDDS---ESDVLD-ILIDKSLVSIS 277 (1083)
Q Consensus 239 l-~~a~f~~-~~~~~~~~~~l~~~---~~~~l~-~L~~~sLi~~~ 277 (1083)
. ....|.. ....+.+...+... +++.++ .|++.+||+..
T Consensus 266 ~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~ 310 (328)
T PRK00080 266 RTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRT 310 (328)
T ss_pred HHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccC
Confidence 4 4444543 34566676666544 666777 89999999754
No 43
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.69 E-value=1.9e-07 Score=100.25 Aligned_cols=150 Identities=20% Similarity=0.307 Sum_probs=99.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
+.+.-.-+||++|+||||||+.++......|...-=+ ..++.++.+-+- +.-+.+
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv---------~~gvkdlr~i~e----------------~a~~~~ 100 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV---------TSGVKDLREIIE----------------EARKNR 100 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc---------cccHHHHHHHHH----------------HHHHHH
Confidence 4566778999999999999999999877776543222 255555554332 222344
Q ss_pred hcCceeEEEEeCCC--ChHHHHHHhhccCCCCCCcEEEE--EecchhH--HhhhccccccEEEecCCCHHHHHHHHHHhh
Q 001407 85 VRRMKLLIVLDDVN--EVGQLKRLIGELDQFGQGSRIVV--TTRDKRV--LEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 85 l~~kr~LlVlDdv~--~~~~~~~l~~~~~~~~~gsrIii--TTR~~~v--~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..+++.++.+|.|. +..|-+.+++.. ..|.-|+| ||.++.. -.... ....++++++|+.++-.+++.+.+
T Consensus 101 ~~gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALl-SR~~vf~lk~L~~~di~~~l~ra~ 176 (436)
T COG2256 101 LLGRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALL-SRARVFELKPLSSEDIKKLLKRAL 176 (436)
T ss_pred hcCCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHh-hhhheeeeecCCHHHHHHHHHHHH
Confidence 56899999999995 445667777654 45777777 6666632 22221 256889999999999999998844
Q ss_pred cCCCCCCc-----hhHHHHHHHHHhhCCCc
Q 001407 159 FKENHCPE-----DLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 159 ~~~~~~~~-----~~~~l~~~i~~~~~glP 183 (1083)
-.....-+ -..+....+++.++|--
T Consensus 177 ~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~ 206 (436)
T COG2256 177 LDEERGLGGQIIVLDEEALDYLVRLSNGDA 206 (436)
T ss_pred hhhhcCCCcccccCCHHHHHHHHHhcCchH
Confidence 32221111 12345567788888864
No 44
>PRK06893 DNA replication initiation factor; Validated
Probab=98.68 E-value=1.6e-07 Score=99.03 Aligned_cols=148 Identities=16% Similarity=0.231 Sum_probs=90.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+.+.|||++|+|||+||+++++....+...+.|+..... .... ..+.+.+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~--------~~~~--------------------~~~~~~~~ 90 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKS--------QYFS--------------------PAVLENLE 90 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHh--------hhhh--------------------HHHHhhcc
Confidence 3568999999999999999999987666666777752100 0000 01111122
Q ss_pred CceeEEEEeCCCCh---HHHH-HHhhccCCC-CCCcEEEEEecch----------hHHhhhccccccEEEecCCCHHHHH
Q 001407 87 RMKLLIVLDDVNEV---GQLK-RLIGELDQF-GQGSRIVVTTRDK----------RVLEKFRGEEKKIYRVNGLEFEEAF 151 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~---~~~~-~l~~~~~~~-~~gsrIiiTTR~~----------~v~~~~~~~~~~~~~v~~L~~~ea~ 151 (1083)
+.-+||+||++.. .+|+ .+...+... ..|.++||+|.+. .+...+. ....++++++++++.+
T Consensus 91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~--~g~~~~l~~pd~e~~~ 167 (229)
T PRK06893 91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLT--WGEIYQLNDLTDEQKI 167 (229)
T ss_pred -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHh--cCCeeeCCCCCHHHHH
Confidence 2348999999863 3444 232222222 2466665554443 4444444 5568999999999999
Q ss_pred HHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHH
Q 001407 152 EHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 187 (1083)
Q Consensus 152 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~ 187 (1083)
+++.+.+...... --.+..+-|++.+.|..-++.
T Consensus 168 ~iL~~~a~~~~l~--l~~~v~~~L~~~~~~d~r~l~ 201 (229)
T PRK06893 168 IVLQRNAYQRGIE--LSDEVANFLLKRLDRDMHTLF 201 (229)
T ss_pred HHHHHHHHHcCCC--CCHHHHHHHHHhccCCHHHHH
Confidence 9999988644321 123445667777766654433
No 45
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.66 E-value=1.3e-06 Score=101.13 Aligned_cols=256 Identities=13% Similarity=0.104 Sum_probs=140.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCC---CCchHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG---PNIPHF 80 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~---~~~~~~ 80 (1083)
..+.+.|+|++|+|||++++++++++.... -..+++.+. .. .+...+...++.++........+ .+....
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~-~~----~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~ 128 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQ-ID----RTRYAIFSEIARQLFGHPPPSSGLSFDELFDK 128 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECC-cC----CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHH
Confidence 345688999999999999999999876544 234444322 11 34456667777765442111111 123344
Q ss_pred HHHHhc--CceeEEEEeCCCChH------HHHHHhhccCCCCCCcE--EEEEecchhHHhhhc----c-ccccEEEecCC
Q 001407 81 TKERVR--RMKLLIVLDDVNEVG------QLKRLIGELDQFGQGSR--IVVTTRDKRVLEKFR----G-EEKKIYRVNGL 145 (1083)
Q Consensus 81 ~~~~l~--~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gsr--IiiTTR~~~v~~~~~----~-~~~~~~~v~~L 145 (1083)
+.+.+. ++.++||||+++... .+..+...... .++++ +|.++.+..+..... . -....+.++++
T Consensus 129 ~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py 207 (394)
T PRK00411 129 IAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPY 207 (394)
T ss_pred HHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCC
Confidence 555554 346899999998643 34444433222 23333 677777665433221 0 01346789999
Q ss_pred CHHHHHHHHHHhhcC---CCCCCchh-HHHHHHHHHhhCCCchhHHHHhhhh-----cCC---CHHHHHHHHHHHhhhcC
Q 001407 146 EFEEAFEHFCNFAFK---ENHCPEDL-NWHSRSVVSYTKGNPLVLEVLGSSL-----CLK---RKSHWGKVLHDLNRICE 213 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a~~---~~~~~~~~-~~l~~~i~~~~~glPLal~~l~~~L-----~~~---~~~~w~~~l~~l~~~~~ 213 (1083)
+.++..+++..++-. .....++. ..+++......|..+.|+.++-.+. .++ +.+.+..+++...
T Consensus 208 ~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~---- 283 (394)
T PRK00411 208 TADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE---- 283 (394)
T ss_pred CHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH----
Confidence 999999999887632 22222222 2223322222455667776654321 111 4556666666542
Q ss_pred cchhhHHhHhhhcccCCCccccceEEEEeeccC----CCChhHHHH----HHh---------hhhHhhhHHHhhccceEE
Q 001407 214 SEIHDIYDILKISFNKLTPRVKSIFLDIACFFE----GEDKDFVAS----ILD---------DSESDVLDILIDKSLVSI 276 (1083)
Q Consensus 214 ~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~----~~~~~~~~~----~l~---------~~~~~~l~~L~~~sLi~~ 276 (1083)
.....-.+..|+.++|.++..++...+ ......+.. +.+ .....++..|.+.++|..
T Consensus 284 ------~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~ 357 (394)
T PRK00411 284 ------IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINT 357 (394)
T ss_pred ------HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEE
Confidence 222334567888888876655543321 111111111 111 114457888999999886
Q ss_pred e
Q 001407 277 S 277 (1083)
Q Consensus 277 ~ 277 (1083)
.
T Consensus 358 ~ 358 (394)
T PRK00411 358 R 358 (394)
T ss_pred E
Confidence 4
No 46
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.63 E-value=1.2e-08 Score=106.76 Aligned_cols=241 Identities=19% Similarity=0.185 Sum_probs=115.4
Q ss_pred cccCCCCCcEEEeeCCCCccc----ccccccCCCCCcEEeccCCcCcc----cCchhhhhccccCeeccCCCCCCCCCcc
Q 001407 510 SIECLTDLEVLDLRGCKRLKR----ISTSFCKLRSLVTLILLGCLNLE----HFPEILEKMEHLKRIYSDRTPITELPSS 581 (1083)
Q Consensus 510 ~i~~l~~L~~L~L~~~~~~~~----lp~~l~~l~~L~~L~L~~~~~~~----~~p~~l~~l~~L~~L~l~~~~l~~lp~~ 581 (1083)
.+..+..++.++|++|.+... +...+.+.++|+.-++++- ..+ .+|+.+..+ .+.
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l----------------~~a 87 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKML----------------SKA 87 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHH----------------HHH
Confidence 344567777778887765432 2233455566666666652 222 223222111 112
Q ss_pred cCCCCCCcEEeccCCCCCccCCCC----cCCCchhhhhhcccccccCCCc--------------hhhcccCccEEEcCCC
Q 001407 582 FENLPGLEVLFVEDCSKLDNLPDN----IGSLEYLYYILAAASAISQLPS--------------SVALSNMLRSLDSSHC 643 (1083)
Q Consensus 582 ~~~l~~L~~L~l~~~~~~~~~p~~----l~~l~~L~~L~l~~~~i~~lp~--------------~~~~l~~L~~L~l~~~ 643 (1083)
+...++|++|+||+|.+....+.. +.++..|++|++.+|.+...-. .....+.|+.+....|
T Consensus 88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rN 167 (382)
T KOG1909|consen 88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRN 167 (382)
T ss_pred HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecc
Confidence 334456666666666655443332 3456677777777776653211 1223344555555555
Q ss_pred CCCCCcC---cccccCCCCccEEEecCCCCCc-----CchhccCCCCCcEEEeeCCCCc-----ccchhhhCCCCCCEee
Q 001407 644 KGLESFP---RTFLLGLSAMGLLHISDYAVRE-----IPQEIAYLSSLEILYLSGNNFE-----SLPAIIKQMSQLRFIH 710 (1083)
Q Consensus 644 ~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~-----lp~~l~~l~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~ 710 (1083)
.+-..-. ...+...+.|+.+.++.|.+.. +-..+..+++|+.|||..|-++ .+...+..+++|+.|+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeec
Confidence 4221100 0113334455555555554432 1223445555555555555544 2223344444555555
Q ss_pred ccCcccCCCCCCCCCCccEEeecCCCCCCcCCCCCCCCcEEeecCCCCCccCC-------CCCCCccEEeccCCCCC
Q 001407 711 LEDFNMLQSLPELPLCLKYLHLIDCKMLQSLPVLPFCLESLDLTGCNMLRSLP-------ELPLCLQYLNLEDCNML 780 (1083)
Q Consensus 711 L~~~~~l~~lp~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~Ls~n~~~~~~~-------~~~~~L~~L~ls~n~~l 780 (1083)
+++|.+...=.. .....+....++|+.|.+.+|.+...-. ...+.|..|+|++|.+-
T Consensus 248 l~dcll~~~Ga~-------------a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 248 LGDCLLENEGAI-------------AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccccccHH-------------HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 555433221000 0001112234467777777777653111 12456888888888763
No 47
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.62 E-value=3.3e-08 Score=97.59 Aligned_cols=123 Identities=24% Similarity=0.244 Sum_probs=46.6
Q ss_pred CCchhhhhhcccccccCCCchhh-cccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhc-cCCCCCcE
Q 001407 608 SLEYLYYILAAASAISQLPSSVA-LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEI-AYLSSLEI 685 (1083)
Q Consensus 608 ~l~~L~~L~l~~~~i~~lp~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l-~~l~~L~~ 685 (1083)
+...+++|++.+|.|..+. .++ .+.+|+.|++++|.+..- . .+..++.|+.|++++|.++++++.+ ..+++|++
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l-~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKL-E--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCccc-c--CccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence 3344566666666666553 233 456777777777775432 1 2556788889999999998886655 46899999
Q ss_pred EEeeCCCCcccc--hhhhCCCCCCEeeccCcccCCCCC------CCCCCccEEeecC
Q 001407 686 LYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLP------ELPLCLKYLHLID 734 (1083)
Q Consensus 686 L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp------~~~~~L~~L~l~~ 734 (1083)
|++++|+|..+. ..+..+++|+.|+|.+|+....-- ...|+|+.||-..
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 999999888654 457788999999999998764411 2345677665443
No 48
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.60 E-value=2e-08 Score=108.45 Aligned_cols=282 Identities=20% Similarity=0.197 Sum_probs=186.4
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
...|.|.++|.|||||||++-.+.. +...|....++.+.....+. ..+--.....+.-.. .++......+..+
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD~----~~v~~~~ag~~gl~~--~~g~~~~~~~~~~ 84 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITDP----ALVFPTLAGALGLHV--QPGDSAVDTLVRR 84 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCch----hHhHHHHHhhccccc--ccchHHHHHHHHH
Confidence 4578999999999999999999999 88889888877777665544 222222222222111 1122223566777
Q ss_pred hcCceeEEEEeCCCChHH-HHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHH-HHHHHHHHhhcCCC
Q 001407 85 VRRMKLLIVLDDVNEVGQ-LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFE-EAFEHFCNFAFKEN 162 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~-ea~~Lf~~~a~~~~ 162 (1083)
..++|.++|+||-.+... -..+...+....+.-+|+.|+|...... .+.++.++.|+.. ++.++|.-.+..-.
T Consensus 85 ~~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~ 159 (414)
T COG3903 85 IGDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVA 159 (414)
T ss_pred HhhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhc
Confidence 888999999999876543 3344445554556678999999654432 5567888888765 78999887663221
Q ss_pred C---CCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHH----Hhhhc---CcchhhHHhHhhhcccCCCc
Q 001407 163 H---CPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHD----LNRIC---ESEIHDIYDILKISFNKLTP 232 (1083)
Q Consensus 163 ~---~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~----l~~~~---~~~~~~i~~~l~~Sy~~L~~ 232 (1083)
. ..........+|.+...|.|+++..+++..+.-...+--+.+.. +..-. ...-......+.+||.-|..
T Consensus 160 ~~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtg 239 (414)
T COG3903 160 LSFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTG 239 (414)
T ss_pred cceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhh
Confidence 1 11334556889999999999999999998876655554444432 11110 00012357789999999999
Q ss_pred cccceEEEEeeccCCCChhHHHHHHhhh--------hHhhhHHHhhccceEEe----CCEEEeeHHHHHHHHHHHhhc
Q 001407 233 RVKSIFLDIACFFEGEDKDFVASILDDS--------ESDVLDILIDKSLVSIS----GNFLNMHDILQEMGRQIVRQE 298 (1083)
Q Consensus 233 ~~k~~fl~~a~f~~~~~~~~~~~~l~~~--------~~~~l~~L~~~sLi~~~----~~~~~mHdll~~~~~~~~~~~ 298 (1083)
-++-.|..++.|...++.+.......+. ....+..+++++++... .-+++.-+-.+.|+.+...+.
T Consensus 240 we~~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~ 317 (414)
T COG3903 240 WERALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRS 317 (414)
T ss_pred HHHHHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 8899999999998888776433222111 34556778889888765 234555566666666665553
No 49
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.58 E-value=1.3e-06 Score=100.18 Aligned_cols=257 Identities=17% Similarity=0.137 Sum_probs=135.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCc------eEEEEeeccccccccCCHHHHHHHHHHhhhc--cccc---cCC
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE------GSCFVSDVRGNSETAGGLEHLQKQMLSTTLS--EKLE---VAG 74 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~------~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~--~~~~---~~~ 74 (1083)
..+.+.|+|++|+|||++|+++++++..... ..+|+.+.. . .+...+...++..+.. .... .+.
T Consensus 39 ~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~-~----~~~~~~~~~i~~~l~~~~~~~~~~~~~~ 113 (365)
T TIGR02928 39 RPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQI-L----DTLYQVLVELANQLRGSGEEVPTTGLST 113 (365)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCC-C----CCHHHHHHHHHHHHhhcCCCCCCCCCCH
Confidence 3467899999999999999999987643322 244554221 1 3344566666666531 1111 111
Q ss_pred CCchHHHHHHhc--CceeEEEEeCCCChH-----HHHHHhhccCCC-C--CCcEEEEEecchhHHhhhc----cc-cccE
Q 001407 75 PNIPHFTKERVR--RMKLLIVLDDVNEVG-----QLKRLIGELDQF-G--QGSRIVVTTRDKRVLEKFR----GE-EKKI 139 (1083)
Q Consensus 75 ~~~~~~~~~~l~--~kr~LlVlDdv~~~~-----~~~~l~~~~~~~-~--~gsrIiiTTR~~~v~~~~~----~~-~~~~ 139 (1083)
.+....+.+.+. +++++||||+++... .+..+.....+. . ....+|.+|.+........ .. ....
T Consensus 114 ~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~ 193 (365)
T TIGR02928 114 SEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEE 193 (365)
T ss_pred HHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcce
Confidence 112234444443 457899999998762 133333221111 1 2334566665554322221 11 1256
Q ss_pred EEecCCCHHHHHHHHHHhhc---CCCCCCchhHHHHHHHHHhhCCCch-hHHHHhhhh-----cCC---CHHHHHHHHHH
Q 001407 140 YRVNGLEFEEAFEHFCNFAF---KENHCPEDLNWHSRSVVSYTKGNPL-VLEVLGSSL-----CLK---RKSHWGKVLHD 207 (1083)
Q Consensus 140 ~~v~~L~~~ea~~Lf~~~a~---~~~~~~~~~~~l~~~i~~~~~glPL-al~~l~~~L-----~~~---~~~~w~~~l~~ 207 (1083)
+.+++.+.+|..+++..++- ......++..+.+.+++....|.|- |+.++-... .++ +.+..+.+.+.
T Consensus 194 i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~ 273 (365)
T TIGR02928 194 IIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEK 273 (365)
T ss_pred eeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 88999999999999998763 2222233444455667777778873 433332111 111 44555555554
Q ss_pred HhhhcCcchhhHHhHhhhcccCCCccccceEEEEeeccC-C---CChhHH----HHHHhh---------hhHhhhHHHhh
Q 001407 208 LNRICESEIHDIYDILKISFNKLTPRVKSIFLDIACFFE-G---EDKDFV----ASILDD---------SESDVLDILID 270 (1083)
Q Consensus 208 l~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~~-~---~~~~~~----~~~l~~---------~~~~~l~~L~~ 270 (1083)
+. .....-...+||.++|.++..++..-+ + .....+ ..+-++ ....++..|..
T Consensus 274 ~~----------~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~ 343 (365)
T TIGR02928 274 IE----------KDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDM 343 (365)
T ss_pred HH----------HHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHh
Confidence 42 112223445777777665554443221 1 111111 111111 15567888999
Q ss_pred ccceEEe
Q 001407 271 KSLVSIS 277 (1083)
Q Consensus 271 ~sLi~~~ 277 (1083)
.|+|+..
T Consensus 344 ~gli~~~ 350 (365)
T TIGR02928 344 LGLVEAE 350 (365)
T ss_pred cCCeEEE
Confidence 9999875
No 50
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.56 E-value=1.7e-07 Score=100.05 Aligned_cols=179 Identities=21% Similarity=0.208 Sum_probs=89.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHH------HHHHHHhhhccccc---------
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL------QKQMLSTTLSEKLE--------- 71 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l------~~~ll~~l~~~~~~--------- 71 (1083)
.+.+.|+|+.|+|||+|++++.+..+..-..++|+......... .+... .+.+..........
T Consensus 20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 97 (234)
T PF01637_consen 20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNES--SLRSFIEETSLADELSEALGISIPSITLEKISKD 97 (234)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHH--HHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECT
T ss_pred CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhh--HHHHHHHHHHHHHHHHHHHhhhcccccchhhhhc
Confidence 57899999999999999999999875543455565533222111 11111 11111111111000
Q ss_pred --cCCCCchHHHHHHhcC--ceeEEEEeCCCChH-------H-HHHHhhccCC--CCCCcEEEEEecchhHHhhhc----
Q 001407 72 --VAGPNIPHFTKERVRR--MKLLIVLDDVNEVG-------Q-LKRLIGELDQ--FGQGSRIVVTTRDKRVLEKFR---- 133 (1083)
Q Consensus 72 --~~~~~~~~~~~~~l~~--kr~LlVlDdv~~~~-------~-~~~l~~~~~~--~~~gsrIiiTTR~~~v~~~~~---- 133 (1083)
.........+.+.+.. ++++||+||++... . +..+...+.. ....-.+|+++....+.....
T Consensus 98 ~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~ 177 (234)
T PF01637_consen 98 LSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKS 177 (234)
T ss_dssp S-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTS
T ss_pred chhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccC
Confidence 0111122333334432 36999999986655 1 1222222221 233445556665555544310
Q ss_pred --cccccEEEecCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHH
Q 001407 134 --GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEV 188 (1083)
Q Consensus 134 --~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~ 188 (1083)
......+.+++|+.+++++++...+-.. ..-+...+..++|...+||+|..|..
T Consensus 178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l~~ 233 (234)
T PF01637_consen 178 PLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYLQE 233 (234)
T ss_dssp TTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHH
T ss_pred ccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHHhc
Confidence 0133449999999999999999865333 11012344569999999999987753
No 51
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.53 E-value=3.7e-07 Score=100.91 Aligned_cols=131 Identities=22% Similarity=0.344 Sum_probs=54.5
Q ss_pred ccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCC-CCCcCchhccCCCCCcEEEeeCC-CCcccchhhhCCCCCCEe
Q 001407 632 SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDY-AVREIPQEIAYLSSLEILYLSGN-NFESLPAIIKQMSQLRFI 709 (1083)
Q Consensus 632 l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~lp~~l~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L 709 (1083)
+.+++.|++++|. +..+|. -.++|+.|.+++| .+..+|..+ .++|++|++++| ++..+|. +|+.|
T Consensus 51 ~~~l~~L~Is~c~-L~sLP~----LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~------sLe~L 117 (426)
T PRK15386 51 ARASGRLYIKDCD-IESLPV----LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE------SVRSL 117 (426)
T ss_pred hcCCCEEEeCCCC-CcccCC----CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc------ccceE
Confidence 4556666666553 333331 1234555555553 233344332 235555555555 4444442 23444
Q ss_pred eccCcccCCCCCCCCCCccEEeecCCCCC--CcCC-CCCCCCcEEeecCCCCCccCCCCCCCccEEeccC
Q 001407 710 HLEDFNMLQSLPELPLCLKYLHLIDCKML--QSLP-VLPFCLESLDLTGCNMLRSLPELPLCLQYLNLED 776 (1083)
Q Consensus 710 ~L~~~~~l~~lp~~~~~L~~L~l~~c~~l--~~l~-~~~~~L~~L~Ls~n~~~~~~~~~~~~L~~L~ls~ 776 (1083)
++.. .....++.+|++|+.|.+.++... ..+| ..|.+|++|++++|......+.++.+|+.|+++.
T Consensus 118 ~L~~-n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~ 186 (426)
T PRK15386 118 EIKG-SATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI 186 (426)
T ss_pred EeCC-CCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence 4432 222234444445555554322211 1111 1233455555554444322222444455555444
No 52
>PF13173 AAA_14: AAA domain
Probab=98.51 E-value=8e-07 Score=84.44 Aligned_cols=121 Identities=19% Similarity=0.241 Sum_probs=80.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-+++.|.|+-|+||||++++++.+.. .-...+|+. ... ... ...... +..+.+.+...
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~-------~~~-~~~~~~------------~~~~~~~~~~~ 59 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDD-------PRD-RRLADP------------DLLEYFLELIK 59 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCC-------HHH-HHHhhh------------hhHHHHHHhhc
Confidence 47899999999999999999998765 334455554 111 111 000000 01133444444
Q ss_pred CceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhc----cccccEEEecCCCHHH
Q 001407 87 RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR----GEEKKIYRVNGLEFEE 149 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~----~~~~~~~~v~~L~~~e 149 (1083)
.++.+|+||+|....+|......+...+++.+|++|+........-. ......+++.+|+..|
T Consensus 60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 47789999999999888887777766667789999999886663311 1134568999998876
No 53
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.43 E-value=1.9e-06 Score=91.28 Aligned_cols=152 Identities=16% Similarity=0.180 Sum_probs=89.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.|.|+|++|+|||++|+.++++........+|+... . +.... ..+.+.+
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~-~----------~~~~~-----------------~~~~~~~ 88 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLA-E----------LAQAD-----------------PEVLEGL 88 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHH-H----------HHHhH-----------------HHHHhhc
Confidence 356899999999999999999998765554455555421 1 11000 0001111
Q ss_pred cCceeEEEEeCCCChH---H-HHHHhhccCC-CCCCcEEEEEecchh---------HHhhhccccccEEEecCCCHHHHH
Q 001407 86 RRMKLLIVLDDVNEVG---Q-LKRLIGELDQ-FGQGSRIVVTTRDKR---------VLEKFRGEEKKIYRVNGLEFEEAF 151 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea~ 151 (1083)
.+ .-+||+||++... . .+.+...+.. ...+.++|+||+... +...+. ....++++++++++..
T Consensus 89 ~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~--~~~~i~l~~l~~~e~~ 165 (226)
T TIGR03420 89 EQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA--WGLVFQLPPLSDEEKI 165 (226)
T ss_pred cc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh--cCeeEecCCCCHHHHH
Confidence 22 2389999997543 2 2333332221 123457999888532 111221 2457999999999999
Q ss_pred HHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHh
Q 001407 152 EHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 190 (1083)
Q Consensus 152 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~ 190 (1083)
.++...+-+... .--.+..+.+++.+.|.|..+.-+.
T Consensus 166 ~~l~~~~~~~~~--~~~~~~l~~L~~~~~gn~r~L~~~l 202 (226)
T TIGR03420 166 AALQSRAARRGL--QLPDEVADYLLRHGSRDMGSLMALL 202 (226)
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHH
Confidence 998876532221 1123445777778888887666553
No 54
>PLN03150 hypothetical protein; Provisional
Probab=98.40 E-value=5.4e-07 Score=109.32 Aligned_cols=105 Identities=19% Similarity=0.231 Sum_probs=68.2
Q ss_pred ccEEEcCCcccc-ccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCC
Q 001407 494 VTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDR 572 (1083)
Q Consensus 494 L~~L~L~~~~l~-~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~ 572 (1083)
++.|+|++|.+. .+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|+.++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 456666666665 5666666777777777777766666776667777777777777766666676666666666666666
Q ss_pred CCCC-CCCcccCCC-CCCcEEeccCCCC
Q 001407 573 TPIT-ELPSSFENL-PGLEVLFVEDCSK 598 (1083)
Q Consensus 573 ~~l~-~lp~~~~~l-~~L~~L~l~~~~~ 598 (1083)
|.+. .+|..+..+ .++..+++.+|..
T Consensus 500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 500 NSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CcccccCChHHhhccccCceEEecCCcc
Confidence 6665 556555442 3455566665543
No 55
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=7.5e-08 Score=111.65 Aligned_cols=127 Identities=23% Similarity=0.231 Sum_probs=74.6
Q ss_pred ccEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCC
Q 001407 494 VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRT 573 (1083)
Q Consensus 494 L~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~ 573 (1083)
++.+++..|.|..+-..+..+++|+.|++.+|.+ ..+...+..+++|++|++++|.+... ..+..++.|+.|++++|
T Consensus 74 l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i-~~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 74 LKELNLRQNLIAKILNHLSKLKSLEALDLYDNKI-EKIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGN 150 (414)
T ss_pred HHhhccchhhhhhhhcccccccceeeeeccccch-hhcccchhhhhcchheeccccccccc--cchhhccchhhheeccC
Confidence 3444455566665444566677777777777663 33332255666777777776654443 23445555777777777
Q ss_pred CCCCCCcccCCCCCCcEEeccCCCCCccCC-CCcCCCchhhhhhcccccccCC
Q 001407 574 PITELPSSFENLPGLEVLFVEDCSKLDNLP-DNIGSLEYLYYILAAASAISQL 625 (1083)
Q Consensus 574 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p-~~l~~l~~L~~L~l~~~~i~~l 625 (1083)
.++.++. +..+++|+.+++++|.+...-+ . ...+.+++.+++.+|.+..+
T Consensus 151 ~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i 201 (414)
T KOG0531|consen 151 LISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI 201 (414)
T ss_pred cchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc
Confidence 7766554 4446667777776666544332 2 35566666666666666544
No 56
>PLN03150 hypothetical protein; Provisional
Probab=98.32 E-value=5.5e-07 Score=109.25 Aligned_cols=92 Identities=22% Similarity=0.274 Sum_probs=66.5
Q ss_pred CCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCC-CCCcccCCCCCCcEEecc
Q 001407 516 DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVE 594 (1083)
Q Consensus 516 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~ 594 (1083)
.++.|+|++|.+.+.+|..++.+++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+. .+|..++++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3667777777777777777777777777777777777777777777777777777777776 566667777777777777
Q ss_pred CCCCCccCCCCcC
Q 001407 595 DCSKLDNLPDNIG 607 (1083)
Q Consensus 595 ~~~~~~~~p~~l~ 607 (1083)
+|.+.+.+|..++
T Consensus 499 ~N~l~g~iP~~l~ 511 (623)
T PLN03150 499 GNSLSGRVPAALG 511 (623)
T ss_pred CCcccccCChHHh
Confidence 7776666665543
No 57
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.30 E-value=1.2e-05 Score=92.90 Aligned_cols=155 Identities=18% Similarity=0.287 Sum_probs=91.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
+....+.++|++|+||||+|+.+++.....|.. +... . .+...+. .++.... ...
T Consensus 34 ~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~---l~a~-----~-~~~~~ir-~ii~~~~---------------~~~ 88 (413)
T PRK13342 34 GRLSSMILWGPPGTGKTTLARIIAGATDAPFEA---LSAV-----T-SGVKDLR-EVIEEAR---------------QRR 88 (413)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE---Eecc-----c-ccHHHHH-HHHHHHH---------------Hhh
Confidence 345678899999999999999999977554422 1111 0 2222221 1221110 011
Q ss_pred hcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEE--ecchh--HHhhhccccccEEEecCCCHHHHHHHHHHhh
Q 001407 85 VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVT--TRDKR--VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiT--TR~~~--v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..+++.+|++|+++.. .+.+.+...+. .|..++|. |.+.. +...... ....+++++++.++..+++.+.+
T Consensus 89 ~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~S-R~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 89 SAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLS-RAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred hcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhc-cceeeEeCCCCHHHHHHHHHHHH
Confidence 2457789999999854 45666665543 35555553 34332 2122211 34679999999999999998865
Q ss_pred cCCCCCC-chhHHHHHHHHHhhCCCchhHHH
Q 001407 159 FKENHCP-EDLNWHSRSVVSYTKGNPLVLEV 188 (1083)
Q Consensus 159 ~~~~~~~-~~~~~l~~~i~~~~~glPLal~~ 188 (1083)
....... .-..+..+.+++.++|.+..+..
T Consensus 165 ~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln 195 (413)
T PRK13342 165 EDKERGLVELDDEALDALARLANGDARRALN 195 (413)
T ss_pred HHhhcCCCCCCHHHHHHHHHhCCCCHHHHHH
Confidence 3211111 12245577889999998865433
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.25 E-value=2.2e-06 Score=82.02 Aligned_cols=113 Identities=19% Similarity=0.264 Sum_probs=70.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhccc-----CceEEEEeeccccccccCCHHHHHHHHHHhhhccccc-cCCCCchH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE-----FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-VAGPNIPH 79 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~ 79 (1083)
+-+++.|+|.+|+|||++++++..+...+ -..++|+.. . .. .....+.+.++..+...... ....++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~i~~~l~~~~~~~~~~~~l~~ 77 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNC-P---SS-RTPRDFAQEILEALGLPLKSRQTSDELRS 77 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEH-H---HH-SSHHHHHHHHHHHHT-SSSSTS-HHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEe-C---CC-CCHHHHHHHHHHHhCccccccCCHHHHHH
Confidence 46789999999999999999999976543 244455542 2 12 35678888888886655444 22223345
Q ss_pred HHHHHhcCce-eEEEEeCCCCh---HHHHHHhhccCCCCCCcEEEEEecc
Q 001407 80 FTKERVRRMK-LLIVLDDVNEV---GQLKRLIGELDQFGQGSRIVVTTRD 125 (1083)
Q Consensus 80 ~~~~~l~~kr-~LlVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~ 125 (1083)
.+.+.+...+ .+||+|+++.. +.++.+..... ..+.++|++.++
T Consensus 78 ~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 78 LLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 6666665554 59999999766 33555544333 667788888876
No 59
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.25 E-value=2.5e-07 Score=107.36 Aligned_cols=143 Identities=24% Similarity=0.186 Sum_probs=69.0
Q ss_pred cEEEcCCccccccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCc-hhhhhccccCeeccCCC
Q 001407 495 TRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP-EILEKMEHLKRIYSDRT 573 (1083)
Q Consensus 495 ~~L~L~~~~l~~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p-~~l~~l~~L~~L~l~~~ 573 (1083)
++|++++|.|+.+. .+..++.|+.|++++|.+ ..++. +..+++|+.+++++|.....-+ . ...+.+|+.+.+.+|
T Consensus 121 ~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i-~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n 196 (414)
T KOG0531|consen 121 QVLDLSFNKITKLE-GLSTLTLLKELNLSGNLI-SDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN 196 (414)
T ss_pred hheecccccccccc-chhhccchhhheeccCcc-hhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC
Confidence 33444444444432 334444455555555542 22222 3345555555565554433322 1 355556666666666
Q ss_pred CCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCc--hhhhhhcccccccCCCchhhcccCccEEEcCCCC
Q 001407 574 PITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLE--YLYYILAAASAISQLPSSVALSNMLRSLDSSHCK 644 (1083)
Q Consensus 574 ~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~--~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 644 (1083)
.+..+.. +..+..+..+++..|.+...-+ +..+. .|+.+++++|.+..++..+..+..+..|++..+.
T Consensus 197 ~i~~i~~-~~~~~~l~~~~l~~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~ 266 (414)
T KOG0531|consen 197 SIREIEG-LDLLKKLVLLSLLDNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR 266 (414)
T ss_pred chhcccc-hHHHHHHHHhhcccccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence 6554432 2222333333444444332211 11222 3677777777777665555555666666666555
No 60
>PRK08727 hypothetical protein; Validated
Probab=98.18 E-value=2.1e-05 Score=83.15 Aligned_cols=143 Identities=13% Similarity=0.078 Sum_probs=85.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
..+.|+|.+|+|||.||+++++....+...++|+... +....+. +.+ +.+ .
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~-----------~~~~~~~----------------~~~-~~l-~ 92 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQ-----------AAAGRLR----------------DAL-EAL-E 92 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHH-----------HhhhhHH----------------HHH-HHH-h
Confidence 4599999999999999999999876665566676411 1111110 111 111 1
Q ss_pred ceeEEEEeCCCChH---HHH-HHhhccCC-CCCCcEEEEEecch---------hHHhhhccccccEEEecCCCHHHHHHH
Q 001407 88 MKLLIVLDDVNEVG---QLK-RLIGELDQ-FGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 88 kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
+.-+||+||++... +++ .+...+.. ...|..||+|++.. ++...+. ....++++++++++-.++
T Consensus 93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~--~~~~~~l~~~~~e~~~~i 170 (233)
T PRK08727 93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLA--QCIRIGLPVLDDVARAAV 170 (233)
T ss_pred cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHh--cCceEEecCCCHHHHHHH
Confidence 23489999997431 222 23222221 12466799999854 1111211 346899999999999999
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCc
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glP 183 (1083)
+.+++..... .-..+...-+++.+.|-.
T Consensus 171 L~~~a~~~~l--~l~~e~~~~La~~~~rd~ 198 (233)
T PRK08727 171 LRERAQRRGL--ALDEAAIDWLLTHGEREL 198 (233)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhCCCCH
Confidence 9987754322 112334556666666544
No 61
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.16 E-value=1.7e-06 Score=69.92 Aligned_cols=59 Identities=32% Similarity=0.571 Sum_probs=47.6
Q ss_pred CCccEEEecCCCCCcCch-hccCCCCCcEEEeeCCCCcccc-hhhhCCCCCCEeeccCccc
Q 001407 658 SAMGLLHISDYAVREIPQ-EIAYLSSLEILYLSGNNFESLP-AIIKQMSQLRFIHLEDFNM 716 (1083)
Q Consensus 658 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~L~~~~~ 716 (1083)
++|+.|++++|.+..+|. .+..+++|++|++++|+++.++ ..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 467888888888888764 5778888888888888888877 4678888888888888763
No 62
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.13 E-value=1.7e-05 Score=90.26 Aligned_cols=151 Identities=21% Similarity=0.292 Sum_probs=85.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+-|.|+|++|+|||++|++++++....|-... ...+......+... .....+...-.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~--------------~~~l~~~~~g~~~~--------~i~~~f~~a~~ 213 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV--------------GSELVRKYIGEGAR--------LVREIFELAKE 213 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc--------------hHHHHHHhhhHHHH--------HHHHHHHHHHh
Confidence 456899999999999999999998765532111 01111111111000 00011121122
Q ss_pred CceeEEEEeCCCCh-------------H---HHHHHhhccCCC--CCCcEEEEEecchhHHhhhc---cccccEEEecCC
Q 001407 87 RMKLLIVLDDVNEV-------------G---QLKRLIGELDQF--GQGSRIVVTTRDKRVLEKFR---GEEKKIYRVNGL 145 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~L 145 (1083)
....+|++|+++.. + .+..+...+... ..+.+||.||...+.....- +..+..++++..
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 34679999998653 1 133333333222 24678888888553322110 124678999999
Q ss_pred CHHHHHHHHHHhhcCCCCCC-chhHHHHHHHHHhhCCCc
Q 001407 146 EFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~glP 183 (1083)
+.++..++|..++.+..... .+ ...+++.+.|..
T Consensus 294 ~~~~r~~Il~~~~~~~~l~~~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 294 DFEGRLEILKIHTRKMKLAEDVD----LEAIAKMTEGAS 328 (364)
T ss_pred CHHHHHHHHHHHHhcCCCCccCC----HHHHHHHcCCCC
Confidence 99999999999875543322 22 345666776654
No 63
>PRK09087 hypothetical protein; Validated
Probab=98.11 E-value=3.2e-05 Score=80.91 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=82.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+.+.|||++|+|||+|++.++.... ..|+.. ..+...+.. .+.
T Consensus 44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~~-----------~~~~~~~~~--------------------~~~ 87 (226)
T PRK09087 44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIHP-----------NEIGSDAAN--------------------AAA 87 (226)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEecH-----------HHcchHHHH--------------------hhh
Confidence 35689999999999999999887532 225431 011111111 111
Q ss_pred CceeEEEEeCCCCh----HHHHHHhhccCCCCCCcEEEEEecch---------hHHhhhccccccEEEecCCCHHHHHHH
Q 001407 87 RMKLLIVLDDVNEV----GQLKRLIGELDQFGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~----~~~~~l~~~~~~~~~gsrIiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
+ -+|++||++.. +.+-.+..... ..|..||+|++.. ++...+. ...+++++++++++-.++
T Consensus 88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~--~gl~~~l~~pd~e~~~~i 161 (226)
T PRK09087 88 E--GPVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLK--AATVVEIGEPDDALLSQV 161 (226)
T ss_pred c--CeEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHh--CCceeecCCCCHHHHHHH
Confidence 1 27888999543 22222332222 2477799998742 3333333 557899999999999999
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHH
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 187 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~ 187 (1083)
+.+.+-.... .--++...-|++.+.|..-++.
T Consensus 162 L~~~~~~~~~--~l~~ev~~~La~~~~r~~~~l~ 193 (226)
T PRK09087 162 IFKLFADRQL--YVDPHVVYYLVSRMERSLFAAQ 193 (226)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHHhhhhHHHHH
Confidence 9988743221 1223456667777776655444
No 64
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.11 E-value=2e-06 Score=69.59 Aligned_cols=58 Identities=22% Similarity=0.357 Sum_probs=52.4
Q ss_pred CCCcEEEcCCCCCCCCCCC-C-CCCCceEEEcCCCccccccCCCccccCcccccCCCCcEEeccCCc
Q 001407 395 KKLRYLHWDTYPLRTLPSN-F-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQ 459 (1083)
Q Consensus 395 ~~L~~L~l~~~~l~~lp~~-~-~l~~L~~L~L~~n~i~~lw~~~~~~~p~~~~~l~~L~~L~L~~~~ 459 (1083)
++|++|++++|.++.+|.. | .+++|++|+|++|.++.+ .|.+|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i-------~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI-------PPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE-------ETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc-------CHHHHcCCCCCCEEeCcCCc
Confidence 3689999999999999865 5 899999999999999988 77899999999999999986
No 65
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.11 E-value=3.9e-05 Score=81.17 Aligned_cols=147 Identities=14% Similarity=0.176 Sum_probs=84.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.+.|+|+.|+|||+||+++++....+-..+.|+..- . . .... ..+.+.+
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~-~---~----~~~~--------------------~~~~~~~ 95 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLD-K---R----AWFV--------------------PEVLEGM 95 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHH-H---H----hhhh--------------------HHHHHHh
Confidence 346789999999999999999999766554455565421 0 0 0000 0111111
Q ss_pred cCceeEEEEeCCCCh---HHHHH-HhhccCC-CCCC-cEEEEEecchh---------HHhhhccccccEEEecCCCHHHH
Q 001407 86 RRMKLLIVLDDVNEV---GQLKR-LIGELDQ-FGQG-SRIVVTTRDKR---------VLEKFRGEEKKIYRVNGLEFEEA 150 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~g-srIiiTTR~~~---------v~~~~~~~~~~~~~v~~L~~~ea 150 (1083)
.. --++++||+... .+|+. +...+.. ...| .++|+||+..- +...+. ...+++++++++++-
T Consensus 96 ~~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~--~g~~~~l~~~~~~~~ 172 (235)
T PRK08084 96 EQ-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLD--WGQIYKLQPLSDEEK 172 (235)
T ss_pred hh-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHh--CCceeeecCCCHHHH
Confidence 11 237899999653 33332 2122211 1123 47999998552 222222 457899999999999
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 151 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 151 ~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
.+++.+++-.... .--++...-+++.+.|..-+
T Consensus 173 ~~~l~~~a~~~~~--~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 173 LQALQLRARLRGF--ELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred HHHHHHHHHHcCC--CCCHHHHHHHHHhhcCCHHH
Confidence 9998886643221 11234455666666655433
No 66
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.07 E-value=4.7e-05 Score=77.88 Aligned_cols=150 Identities=12% Similarity=0.176 Sum_probs=91.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhccc---------------------CceEEEEeeccccccccCCHHHHHHHHHHhh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEGSCFVSDVRGNSETAGGLEHLQKQMLSTT 65 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 65 (1083)
...+.++|+.|+||||+|+.+...+... +....++... ... .+.+.+ +++....
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~-~~~~~i-~~i~~~~ 88 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS-IKVDQV-RELVEFL 88 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc-CCHHHH-HHHHHHH
Confidence 3678999999999999999999876431 1111222100 000 112111 1111111
Q ss_pred hccccccCCCCchHHHHHHhcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEe
Q 001407 66 LSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v 142 (1083)
... -..+.+-++|+|+++.. +..+.++..+....+.+.+|++|++. .+...... ....+++
T Consensus 89 ~~~---------------~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~ 152 (188)
T TIGR00678 89 SRT---------------PQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPF 152 (188)
T ss_pred ccC---------------cccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeC
Confidence 100 01244668899998764 34667777776655677777777654 33333322 3468999
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 143 NGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
.+++.++..+++.+. + . ..+.+..+++.++|.|..
T Consensus 153 ~~~~~~~~~~~l~~~--g---i---~~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 153 PPLSEEALLQWLIRQ--G---I---SEEAAELLLALAGGSPGA 187 (188)
T ss_pred CCCCHHHHHHHHHHc--C---C---CHHHHHHHHHHcCCCccc
Confidence 999999999998876 1 1 135588999999998853
No 67
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=1.3e-07 Score=96.54 Aligned_cols=179 Identities=20% Similarity=0.156 Sum_probs=110.1
Q ss_pred CCccEEEcCCcccc--ccCccccCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCc--hhhhhccccCe
Q 001407 492 GKVTRLYLGQSAIE--EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFP--EILEKMEHLKR 567 (1083)
Q Consensus 492 ~~L~~L~L~~~~l~--~lp~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p--~~l~~l~~L~~ 567 (1083)
..+++|+|+...|+ .+..-+..+.+|+.|.|.++++...+-..+.+-.+|+.|++++|+...... -.+.+++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 35677888777776 455556778888888888888777777777888888888888887665432 23556666777
Q ss_pred eccCCCCCCC-C-CcccCC-CCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCC
Q 001407 568 IYSDRTPITE-L-PSSFEN-LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCK 644 (1083)
Q Consensus 568 L~l~~~~l~~-l-p~~~~~-l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~ 644 (1083)
|+++.+.+.. . ...+.. -++|..|+++|+...- ....+..-...+++|.+|||+.|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl--------------------~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNL--------------------QKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhh--------------------hhhHHHHHHHhCCceeeecccccc
Confidence 7766665441 0 000111 1344455555443110 011122223456777777777776
Q ss_pred CCCCcCcccccCCCCccEEEecCCCCCcCch---hccCCCCCcEEEeeCC
Q 001407 645 GLESFPRTFLLGLSAMGLLHISDYAVREIPQ---EIAYLSSLEILYLSGN 691 (1083)
Q Consensus 645 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~---~l~~l~~L~~L~Ls~n 691 (1083)
.+..-....+..++.|++|.++.|..- +|. .+...|+|.+|++.++
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYDI-IPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcCC-ChHHeeeeccCcceEEEEeccc
Confidence 655544444667777777777777432 122 3567788888888776
No 68
>PRK05642 DNA replication initiation factor; Validated
Probab=98.04 E-value=5.1e-05 Score=80.17 Aligned_cols=147 Identities=14% Similarity=0.254 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
+.+.|||..|+|||.||+++++.+..+-..++|+.. .++.... ..+.+.+.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~-----------~~~~~~~-----------------~~~~~~~~~ 97 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL-----------AELLDRG-----------------PELLDNLEQ 97 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH-----------HHHHhhh-----------------HHHHHhhhh
Confidence 578999999999999999999876655455667651 1111110 122233332
Q ss_pred ceeEEEEeCCCCh---HHHHH-HhhccCC-CCCCcEEEEEecchh--HHh---hhcc--ccccEEEecCCCHHHHHHHHH
Q 001407 88 MKLLIVLDDVNEV---GQLKR-LIGELDQ-FGQGSRIVVTTRDKR--VLE---KFRG--EEKKIYRVNGLEFEEAFEHFC 155 (1083)
Q Consensus 88 kr~LlVlDdv~~~---~~~~~-l~~~~~~-~~~gsrIiiTTR~~~--v~~---~~~~--~~~~~~~v~~L~~~ea~~Lf~ 155 (1083)
-. ++|+||+... .+|+. +..-+.. ...|.+||+|++... ... ...+ ....+++++++++++-.+++.
T Consensus 98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~ 176 (234)
T PRK05642 98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ 176 (234)
T ss_pred CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence 22 6788999632 23332 3333322 234778999887542 111 0100 134678999999999999998
Q ss_pred HhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 156 NFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 156 ~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
+++...... --.+...-+++++.|-.-+
T Consensus 177 ~ka~~~~~~--l~~ev~~~L~~~~~~d~r~ 204 (234)
T PRK05642 177 LRASRRGLH--LTDEVGHFILTRGTRSMSA 204 (234)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCCHHH
Confidence 666433211 1134455666666655433
No 69
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.03 E-value=4.5e-05 Score=79.54 Aligned_cols=152 Identities=14% Similarity=0.178 Sum_probs=83.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCc--eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
...+.|||..|+|||.|.+++++.+.+..+ .++|+. ..+..+.+....... ....+++.
T Consensus 34 ~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~-----------~~~f~~~~~~~~~~~--------~~~~~~~~ 94 (219)
T PF00308_consen 34 YNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS-----------AEEFIREFADALRDG--------EIEEFKDR 94 (219)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE-----------HHHHHHHHHHHHHTT--------SHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec-----------HHHHHHHHHHHHHcc--------cchhhhhh
Confidence 345789999999999999999998765432 344553 223333333332221 11445555
Q ss_pred hcCceeEEEEeCCCChH---HHH-HHhhccCC-CCCCcEEEEEecch-h--------HHhhhccccccEEEecCCCHHHH
Q 001407 85 VRRMKLLIVLDDVNEVG---QLK-RLIGELDQ-FGQGSRIVVTTRDK-R--------VLEKFRGEEKKIYRVNGLEFEEA 150 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~~---~~~-~l~~~~~~-~~~gsrIiiTTR~~-~--------v~~~~~~~~~~~~~v~~L~~~ea 150 (1083)
++. -=++++||++... .|+ .+..-+.. ...|-+||+|++.. . +...+. ..-+++++++++++.
T Consensus 95 ~~~-~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~--~Gl~~~l~~pd~~~r 171 (219)
T PF00308_consen 95 LRS-ADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLS--WGLVVELQPPDDEDR 171 (219)
T ss_dssp HCT-SSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHH--CSEEEEE----HHHH
T ss_pred hhc-CCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHh--hcchhhcCCCCHHHH
Confidence 553 3478899996542 222 22222221 13577899999544 1 222222 556799999999999
Q ss_pred HHHHHHhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 151 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 151 ~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
.+++.+.|-..... --.+.++-+++.+.+.
T Consensus 172 ~~il~~~a~~~~~~--l~~~v~~~l~~~~~~~ 201 (219)
T PF00308_consen 172 RRILQKKAKERGIE--LPEEVIEYLARRFRRD 201 (219)
T ss_dssp HHHHHHHHHHTT----S-HHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHhCCC--CcHHHHHHHHHhhcCC
Confidence 99999887433221 1223344455444433
No 70
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=0.00011 Score=85.04 Aligned_cols=163 Identities=13% Similarity=0.147 Sum_probs=95.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
.-+.|+|..|+|||+|++++++.+.... ..++|+. ...+...+...+.... +....+++.+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~-----------~~~f~~~~~~~l~~~~------~~~~~~~~~~ 204 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS-----------GDEFARKAVDILQKTH------KEIEQFKNEI 204 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHHhh------hHHHHHHHHh
Confidence 4588999999999999999999765432 2344443 2334444444332210 0113334433
Q ss_pred cCceeEEEEeCCCChH---H-HHHHhhccCC-CCCCcEEEEEecch-hH--------HhhhccccccEEEecCCCHHHHH
Q 001407 86 RRMKLLIVLDDVNEVG---Q-LKRLIGELDQ-FGQGSRIVVTTRDK-RV--------LEKFRGEEKKIYRVNGLEFEEAF 151 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~---~-~~~l~~~~~~-~~~gsrIiiTTR~~-~v--------~~~~~~~~~~~~~v~~L~~~ea~ 151 (1083)
+ +.-+||+||+.... . .+.+..-+.. ...|..||+|+... .. ...+. ..-++++++++.++..
T Consensus 205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~--~Gl~~~L~~pd~e~r~ 281 (450)
T PRK14087 205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFN--MGLSIAIQKLDNKTAT 281 (450)
T ss_pred c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHh--CCceeccCCcCHHHHH
Confidence 3 34478899996432 2 2333322221 12455788886533 12 12222 4566889999999999
Q ss_pred HHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHh
Q 001407 152 EHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 190 (1083)
Q Consensus 152 ~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~ 190 (1083)
+++.+++-.......-..+...-|++.++|.|-.+.-+.
T Consensus 282 ~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 282 AIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 999988743221112235667889999999986655443
No 71
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.97 E-value=8e-05 Score=75.29 Aligned_cols=150 Identities=19% Similarity=0.212 Sum_probs=83.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
+...-+.+||++|+||||||.-++++....|. +.. . ..- ....++... ...
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s-g-~~i---~k~~dl~~i---------------------l~~ 98 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFK---ITS-G-PAI---EKAGDLAAI---------------------LTN 98 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE-C-CC-----SCHHHHHH---------------------HHT
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeE---ecc-c-hhh---hhHHHHHHH---------------------HHh
Confidence 44677899999999999999999998877663 121 1 011 111122111 111
Q ss_pred hcCceeEEEEeCCCCh--HHHHHHhhccCCC--------CCCc-----------EEEEEecchhHHhhhccccccEEEec
Q 001407 85 VRRMKLLIVLDDVNEV--GQLKRLIGELDQF--------GQGS-----------RIVVTTRDKRVLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~--------~~gs-----------rIiiTTR~~~v~~~~~~~~~~~~~v~ 143 (1083)
++ ++-++.+|.+... .+-+.|.+....+ ++++ -|=-|||...+...+.....-+.++.
T Consensus 99 l~-~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~ 177 (233)
T PF05496_consen 99 LK-EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLE 177 (233)
T ss_dssp ---TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE--
T ss_pred cC-CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchh
Confidence 22 2345667888643 3444554443321 2222 35568887666655543344556899
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhH
Q 001407 144 GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 186 (1083)
Q Consensus 144 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal 186 (1083)
..+.+|-.++..+.|-.-+. +-..+.+.+|++.+.|-|--.
T Consensus 178 ~Y~~~el~~Iv~r~a~~l~i--~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 178 FYSEEELAKIVKRSARILNI--EIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp --THHHHHHHHHHCCHCTT---EE-HHHHHHHHHCTTTSHHHH
T ss_pred cCCHHHHHHHHHHHHHHhCC--CcCHHHHHHHHHhcCCChHHH
Confidence 99999999999887643222 334567899999999999543
No 72
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.96 E-value=6.4e-05 Score=79.34 Aligned_cols=129 Identities=16% Similarity=0.296 Sum_probs=81.0
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHH
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 83 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 83 (1083)
.+...-+.+||++|+||||||+-+...-+.+- ..||.- +.+.....++. .++++ ..-..
T Consensus 159 q~~ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfvel----SAt~a~t~dvR-~ife~--------------aq~~~ 217 (554)
T KOG2028|consen 159 QNRIPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVEL----SATNAKTNDVR-DIFEQ--------------AQNEK 217 (554)
T ss_pred cCCCCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEEE----eccccchHHHH-HHHHH--------------HHHHH
Confidence 35667788999999999999999998654431 334442 22212222222 22222 11123
Q ss_pred HhcCceeEEEEeCCCC--hHHHHHHhhccCCCCCCcEEEE--EecchhHH--hhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 84 RVRRMKLLIVLDDVNE--VGQLKRLIGELDQFGQGSRIVV--TTRDKRVL--EKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 84 ~l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIii--TTR~~~v~--~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
.+.++|..+.+|.|.. ..|-+.+++ ....|.-++| ||.+.... ...- ....++.+++|+.++-..++.+.
T Consensus 218 ~l~krkTilFiDEiHRFNksQQD~fLP---~VE~G~I~lIGATTENPSFqln~aLl-SRC~VfvLekL~~n~v~~iL~ra 293 (554)
T KOG2028|consen 218 SLTKRKTILFIDEIHRFNKSQQDTFLP---HVENGDITLIGATTENPSFQLNAALL-SRCRVFVLEKLPVNAVVTILMRA 293 (554)
T ss_pred hhhcceeEEEeHHhhhhhhhhhhcccc---eeccCceEEEecccCCCccchhHHHH-hccceeEeccCCHHHHHHHHHHH
Confidence 4567899999999854 345455544 3456887776 77766432 1111 15678999999999998888873
No 73
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.95 E-value=8.8e-05 Score=86.77 Aligned_cols=165 Identities=15% Similarity=0.097 Sum_probs=92.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc--cCceEEEEeeccccc--cccCCHHHHHHHHHHhhhccccccCCCCchHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH--EFEGSCFVSDVRGNS--ETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTK 82 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~~~~~~~--~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 82 (1083)
...+.++|++|+||||+|+.++..+.. .+...|+.+.....- ....++. .+... ...+.+..+.+.
T Consensus 36 ~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~--------el~~~--~~~~vd~iR~l~ 105 (504)
T PRK14963 36 GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL--------EIDAA--SNNSVEDVRDLR 105 (504)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE--------Eeccc--ccCCHHHHHHHH
Confidence 356799999999999999999987632 222233322100000 0000000 00000 000000011122
Q ss_pred HH-----hcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHH
Q 001407 83 ER-----VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHF 154 (1083)
Q Consensus 83 ~~-----l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf 154 (1083)
+. ..+++-++|+|+++.. +.++.+...+....+...+|++|... .+...... ....+++.+++.++..+++
T Consensus 106 ~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S-Rc~~~~f~~ls~~el~~~L 184 (504)
T PRK14963 106 EKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS-RTQHFRFRRLTEEEIAGKL 184 (504)
T ss_pred HHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc-ceEEEEecCCCHHHHHHHH
Confidence 21 1234568899998754 45777777766545565666655443 33333321 4567999999999999999
Q ss_pred HHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 155 CNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 155 ~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
.+.+-...... ..+.+..|++.++|.+-
T Consensus 185 ~~i~~~egi~i--~~~Al~~ia~~s~GdlR 212 (504)
T PRK14963 185 RRLLEAEGREA--EPEALQLVARLADGAMR 212 (504)
T ss_pred HHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 88774433211 23457889999999874
No 74
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.95 E-value=1.4e-05 Score=87.50 Aligned_cols=91 Identities=15% Similarity=0.163 Sum_probs=60.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC-------chH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-------IPH 79 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-------~~~ 79 (1083)
+.++|+|++|+||||||+++|+.+.. +|+..+|+..+++.. ..+.++++++....-....+.+... ...
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~---~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie 246 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIE 246 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCch---hHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHH
Confidence 56789999999999999999997654 799999998776633 3577888888643222211111110 111
Q ss_pred HHHHH-hcCceeEEEEeCCCChH
Q 001407 80 FTKER-VRRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 80 ~~~~~-l~~kr~LlVlDdv~~~~ 101 (1083)
..++. -.+++++|++|++....
T Consensus 247 ~Ae~~~e~G~dVlL~iDsItR~a 269 (416)
T PRK09376 247 KAKRLVEHGKDVVILLDSITRLA 269 (416)
T ss_pred HHHHHHHcCCCEEEEEEChHHHH
Confidence 11111 36789999999986543
No 75
>COG3899 Predicted ATPase [General function prediction only]
Probab=97.94 E-value=9.6e-05 Score=92.20 Aligned_cols=223 Identities=18% Similarity=0.236 Sum_probs=136.7
Q ss_pred CceeEEEEeCCCChHH-----HHHHhhccC--C-CCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 87 RMKLLIVLDDVNEVGQ-----LKRLIGELD--Q-FGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~-----~~~l~~~~~--~-~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
.++.++|+||+.-.+. ++.+..... . .....-.+.|.+.. ..... .......+.+.+|+..+...+....
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~-~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILK-SATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhh-cCCceeEEecCcCchhhHHHHHHHH
Confidence 3489999999953332 334443332 0 00112233344433 11111 1124567999999999999998877
Q ss_pred hcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCC-------CHHHHHHHHHHHhhhcCcchhhHHhHhhhcccCC
Q 001407 158 AFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK-------RKSHWGKVLHDLNRICESEIHDIYDILKISFNKL 230 (1083)
Q Consensus 158 a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~-------~~~~w~~~l~~l~~~~~~~~~~i~~~l~~Sy~~L 230 (1083)
...... ...+.+..|+++.+|+|+-+..+-..+... +...|..-...+.... ..+++.+.+..-.+.|
T Consensus 232 l~~~~~---~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~--~~~~vv~~l~~rl~kL 306 (849)
T COG3899 232 LGCTKL---LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILA--TTDAVVEFLAARLQKL 306 (849)
T ss_pred hCCccc---ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCch--hhHHHHHHHHHHHhcC
Confidence 633232 234557889999999999998888877653 3345554444333321 2233566788889999
Q ss_pred CccccceEEEEeeccCCCChhHHHHHHhhh----hHhhhHHHhhccceEEe--------CCEE---EeeHHHHHHHHHHH
Q 001407 231 TPRVKSIFLDIACFFEGEDKDFVASILDDS----ESDVLDILIDKSLVSIS--------GNFL---NMHDILQEMGRQIV 295 (1083)
Q Consensus 231 ~~~~k~~fl~~a~f~~~~~~~~~~~~l~~~----~~~~l~~L~~~sLi~~~--------~~~~---~mHdll~~~~~~~~ 295 (1083)
|...+++....||+...++.+.+..+.++. +...++.|....++..+ .... -.|+.+|+.+-...
T Consensus 307 ~~~t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~i 386 (849)
T COG3899 307 PGTTREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNLI 386 (849)
T ss_pred CHHHHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhccC
Confidence 999999999999999999988888777644 55556666655555321 1111 36777777665554
Q ss_pred hhccccCCCccccCCChhHHHHHHhcCc
Q 001407 296 RQESEKEPGKRSRLWDPKEISRVLKHNK 323 (1083)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~i~~~l~~~~ 323 (1083)
.+. .|-..+..|...+..+.
T Consensus 387 ~~~--------~rq~~H~~i~~lL~~~~ 406 (849)
T COG3899 387 PES--------QRQYLHLRIGQLLEQNI 406 (849)
T ss_pred chh--------hHHHHHHHHHHHHHHhC
Confidence 433 22344555666665543
No 76
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=1.9e-07 Score=95.36 Aligned_cols=156 Identities=15% Similarity=0.107 Sum_probs=77.5
Q ss_pred CCcEEeccCCcCccc-CchhhhhccccCeeccCCCCCC-CCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhc
Q 001407 540 SLVTLILLGCLNLEH-FPEILEKMEHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 617 (1083)
Q Consensus 540 ~L~~L~L~~~~~~~~-~p~~l~~l~~L~~L~l~~~~l~-~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l 617 (1083)
.|++|||+...+... +-..+..+.+|+.|.+.|+.+. .+-..+..-.+|+.|+++.|+-......
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~------------- 252 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENAL------------- 252 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHH-------------
Confidence 477777776444322 2334566677777777777665 3444456666777777776653322111
Q ss_pred ccccccCCCchhhcccCccEEEcCCCCCCCCcCccc-ccCCCCccEEEecCCCC----CcCchhccCCCCCcEEEeeCCC
Q 001407 618 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYAV----REIPQEIAYLSSLEILYLSGNN 692 (1083)
Q Consensus 618 ~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l----~~lp~~l~~l~~L~~L~Ls~n~ 692 (1083)
.-.+..++.|..|++++|......-... ..--+.|+.|+++++.- ..+..-...+++|..||||+|.
T Consensus 253 --------~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 253 --------QLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred --------HHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 0112334444444444444332221111 11123444455544421 1122223456677777777664
Q ss_pred -Cc-ccchhhhCCCCCCEeeccCccc
Q 001407 693 -FE-SLPAIIKQMSQLRFIHLEDFNM 716 (1083)
Q Consensus 693 -l~-~lp~~l~~l~~L~~L~L~~~~~ 716 (1083)
++ ..-..+.+++.|++|.++.|-.
T Consensus 325 ~l~~~~~~~~~kf~~L~~lSlsRCY~ 350 (419)
T KOG2120|consen 325 MLKNDCFQEFFKFNYLQHLSLSRCYD 350 (419)
T ss_pred ccCchHHHHHHhcchheeeehhhhcC
Confidence 22 2334456667777777776654
No 77
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.91 E-value=0.00032 Score=79.58 Aligned_cols=94 Identities=13% Similarity=0.190 Sum_probs=63.4
Q ss_pred ceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++... .++.++..+....+..++|++|.+. .+.....+ ....+++++++.++..+.+...+-..+..
T Consensus 119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~ 197 (363)
T PRK14961 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILS-RCLQFKLKIISEEKIFNFLKYILIKESID 197 (363)
T ss_pred CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 45689999998764 4667777766555667777777554 34333321 34679999999999999888766433221
Q ss_pred CchhHHHHHHHHHhhCCCch
Q 001407 165 PEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPL 184 (1083)
-..+.++.+++.++|.|-
T Consensus 198 --i~~~al~~ia~~s~G~~R 215 (363)
T PRK14961 198 --TDEYALKLIAYHAHGSMR 215 (363)
T ss_pred --CCHHHHHHHHHHcCCCHH
Confidence 123456778999999875
No 78
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.90 E-value=0.00011 Score=77.70 Aligned_cols=151 Identities=14% Similarity=0.166 Sum_probs=85.9
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.+.|+|..|+|||+||+++++.....-....++.... +...+ ..
T Consensus 41 ~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~-----------~~~~~---------------------~~- 87 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS-----------PLLAF---------------------DF- 87 (227)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH-----------hHHHH---------------------hh-
Confidence 3467899999999999999999997644333444554110 00000 00
Q ss_pred cCceeEEEEeCCCCh--HHHHHHhhccCCC-CCCc-EEEEEecchhHHh--------hhccccccEEEecCCCHHHHHHH
Q 001407 86 RRMKLLIVLDDVNEV--GQLKRLIGELDQF-GQGS-RIVVTTRDKRVLE--------KFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~-~~gs-rIiiTTR~~~v~~--------~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
....-+||+||++.. .+.+.+...+... ..|. .||+|++...... .+. ....++++++++++-.++
T Consensus 88 ~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~--~~~~i~l~pl~~~~~~~~ 165 (227)
T PRK08903 88 DPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLG--WGLVYELKPLSDADKIAA 165 (227)
T ss_pred cccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHh--cCeEEEecCCCHHHHHHH
Confidence 112346888999643 2223333332211 2344 3666666432211 111 236789999999887777
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhh
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL 193 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L 193 (1083)
+.+.+-.... .-..+..+.+++...|.+..++.+-..+
T Consensus 166 l~~~~~~~~v--~l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 166 LKAAAAERGL--QLADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred HHHHHHHcCC--CCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 7665422221 1223456777788888887776665433
No 79
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.90 E-value=0.00016 Score=80.37 Aligned_cols=156 Identities=17% Similarity=0.234 Sum_probs=94.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc------ccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS------HEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHF 80 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~------~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~ 80 (1083)
.+...++|+.|+||||+|+.++..+- .+.+...|.. ..+ .. .++.++. ++...+....
T Consensus 26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-~~~--~~-i~v~~ir-~~~~~~~~~p----------- 89 (313)
T PRK05564 26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-INK--KS-IGVDDIR-NIIEEVNKKP----------- 89 (313)
T ss_pred CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc-ccC--CC-CCHHHHH-HHHHHHhcCc-----------
Confidence 46778999999999999999998652 2333333322 111 11 2333322 2222211100
Q ss_pred HHHHhcCceeEEEEeCC--CChHHHHHHhhccCCCCCCcEEEEEecchhHH-hhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 81 TKERVRRMKLLIVLDDV--NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVL-EKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 81 ~~~~l~~kr~LlVlDdv--~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
...++|+ +|+|++ .+.+.++.|+..+....+++.+|++|.+.+.. ....+ ....+++.++++++..+.+.+.
T Consensus 90 ---~~~~~kv-~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 90 ---YEGDKKV-IIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKS-RCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred ---ccCCceE-EEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHh-hceeeeCCCcCHHHHHHHHHHH
Confidence 1123444 555554 45667888888887767789999888766432 22221 4568999999999998888655
Q ss_pred hcCCCCCCchhHHHHHHHHHhhCCCchhHHHH
Q 001407 158 AFKENHCPEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 158 a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
. .. ...+.++.++.+++|.|..+...
T Consensus 165 ~-~~-----~~~~~~~~l~~~~~g~~~~a~~~ 190 (313)
T PRK05564 165 Y-ND-----IKEEEKKSAIAFSDGIPGKVEKF 190 (313)
T ss_pred h-cC-----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 3 11 11233678899999998655433
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=97.89 E-value=0.0001 Score=82.25 Aligned_cols=158 Identities=13% Similarity=0.226 Sum_probs=89.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
+.+-+.++|++|+||||+|+.+++.+.. .|...+.-.+. ++. .+...+. .............
T Consensus 33 ~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~---sd~-~~~~~vr-~~i~~~~~~~~~~------------ 95 (319)
T PLN03025 33 NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNA---SDD-RGIDVVR-NKIKMFAQKKVTL------------ 95 (319)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecc---ccc-ccHHHHH-HHHHHHHhccccC------------
Confidence 3455779999999999999999987633 33322111111 111 2333222 2222111110000
Q ss_pred hcCceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCC
Q 001407 85 VRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKE 161 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~ 161 (1083)
-.++.-++|+|+++... +.+.+...+....+.+++|++|... .+...... ....++++++++++..+.+...+-..
T Consensus 96 ~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S-Rc~~i~f~~l~~~~l~~~L~~i~~~e 174 (319)
T PLN03025 96 PPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS-RCAIVRFSRLSDQEILGRLMKVVEAE 174 (319)
T ss_pred CCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-hhhcccCCCCCHHHHHHHHHHHHHHc
Confidence 01345689999997653 3445555444445667888877543 22222221 34578999999999998888876443
Q ss_pred CCCCchhHHHHHHHHHhhCCCc
Q 001407 162 NHCPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 162 ~~~~~~~~~l~~~i~~~~~glP 183 (1083)
+..- ..+....+++.++|-.
T Consensus 175 gi~i--~~~~l~~i~~~~~gDl 194 (319)
T PLN03025 175 KVPY--VPEGLEAIIFTADGDM 194 (319)
T ss_pred CCCC--CHHHHHHHHHHcCCCH
Confidence 3211 1345677888888865
No 81
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.89 E-value=0.0002 Score=81.01 Aligned_cols=172 Identities=15% Similarity=0.103 Sum_probs=89.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccC-ce-EEEEeeccccccccCCHHHHHH--HHHHhhhccccccCCCCchHHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF-EG-SCFVSDVRGNSETAGGLEHLQK--QMLSTTLSEKLEVAGPNIPHFT 81 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F-~~-~~~~~~~~~~~~~~~~l~~l~~--~ll~~l~~~~~~~~~~~~~~~~ 81 (1083)
..+.+.++|++|+||||+|+++++.+.... .. .+++. ....... ....+.. .+....... .. ........+
T Consensus 35 ~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~-~~~~~~~--~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~ 109 (337)
T PRK12402 35 NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN-VADFFDQ--GKKYLVEDPRFAHFLGTD-KR-IRSSKIDNF 109 (337)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec-hhhhhhc--chhhhhcCcchhhhhhhh-hh-hccchHHHH
Confidence 345688999999999999999998764332 22 23333 1111000 0000000 000000000 00 000001122
Q ss_pred HHHh---------cCceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHH
Q 001407 82 KERV---------RRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEE 149 (1083)
Q Consensus 82 ~~~l---------~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~e 149 (1083)
++.+ ...+-+||+||++... ..+.+...+....+.+++|+||... .+...... ....+++.+++.++
T Consensus 110 ~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~s-r~~~v~~~~~~~~~ 188 (337)
T PRK12402 110 KHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRS-RCLPLFFRAPTDDE 188 (337)
T ss_pred HHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcC-CceEEEecCCCHHH
Confidence 2111 1234589999997553 3444544444344567888887543 23232221 34568899999999
Q ss_pred HHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 150 AFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 150 a~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
..+++...+-..... -..+.++.++++++|.+-.
T Consensus 189 ~~~~l~~~~~~~~~~--~~~~al~~l~~~~~gdlr~ 222 (337)
T PRK12402 189 LVDVLESIAEAEGVD--YDDDGLELIAYYAGGDLRK 222 (337)
T ss_pred HHHHHHHHHHHcCCC--CCHHHHHHHHHHcCCCHHH
Confidence 999998876433221 1244577888888887543
No 82
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.88 E-value=0.00013 Score=88.70 Aligned_cols=149 Identities=20% Similarity=0.326 Sum_probs=84.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
+....+.++|++|+||||+|+.+++.....|. .+..+ . .++..+. +.+. ...+.
T Consensus 50 ~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~lna~-----~-~~i~dir-~~i~----------------~a~~~ 103 (725)
T PRK13341 50 DRVGSLILYGPPGVGKTTLARIIANHTRAHFS---SLNAV-----L-AGVKDLR-AEVD----------------RAKER 103 (725)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCcce---eehhh-----h-hhhHHHH-HHHH----------------HHHHH
Confidence 34557789999999999999999997765542 22111 0 1222211 1111 11111
Q ss_pred --hcCceeEEEEeCCCC--hHHHHHHhhccCCCCCCcEEEEE--ecch--hHHhhhccccccEEEecCCCHHHHHHHHHH
Q 001407 85 --VRRMKLLIVLDDVNE--VGQLKRLIGELDQFGQGSRIVVT--TRDK--RVLEKFRGEEKKIYRVNGLEFEEAFEHFCN 156 (1083)
Q Consensus 85 --l~~kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiT--TR~~--~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~ 156 (1083)
..+++.++||||++. ..+.+.|...+. .|..++|+ |++. .+.....+ ....+++++++.++...++.+
T Consensus 104 l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~S-R~~v~~l~pLs~edi~~IL~~ 179 (725)
T PRK13341 104 LERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVS-RSRLFRLKSLSDEDLHQLLKR 179 (725)
T ss_pred hhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhc-cccceecCCCCHHHHHHHHHH
Confidence 124567999999974 455667765433 35655653 3332 12222211 345799999999999999887
Q ss_pred hhcCC-----CCCCchhHHHHHHHHHhhCCCc
Q 001407 157 FAFKE-----NHCPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 157 ~a~~~-----~~~~~~~~~l~~~i~~~~~glP 183 (1083)
.+-.. .....-..+....|++++.|..
T Consensus 180 ~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~ 211 (725)
T PRK13341 180 ALQDKERGYGDRKVDLEPEAEKHLVDVANGDA 211 (725)
T ss_pred HHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH
Confidence 65310 1111112344566777777753
No 83
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.87 E-value=0.00026 Score=85.65 Aligned_cols=101 Identities=12% Similarity=0.123 Sum_probs=67.9
Q ss_pred cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCC
Q 001407 86 RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKEN 162 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 162 (1083)
.+++-++|||+++.. +..+.|+..+.......++|++|.+. .+.....+ ....|++++++.++..+++.+.+-.+.
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~Eg 195 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQ 195 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcC
Confidence 356778999998754 56777777766555567766666554 44433221 457899999999999999987653322
Q ss_pred CCCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 163 HCPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 163 ~~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
. .-..+.+..|++.++|.|- |+..+
T Consensus 196 I--~~edeAL~lIA~~S~Gd~R~ALnLL 221 (944)
T PRK14949 196 L--PFEAEALTLLAKAANGSMRDALSLT 221 (944)
T ss_pred C--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 1223457889999999874 44443
No 84
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.86 E-value=5.6e-05 Score=73.86 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=57.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.+.|+|.+|+|||++|+++++.+...-..++++. ....... ....... ... ..........
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-~~~~~~~----~~~~~~~--~~~---------~~~~~~~~~~ 81 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN-ASDLLEG----LVVAELF--GHF---------LVRLLFELAE 81 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe-hhhhhhh----hHHHHHh--hhh---------hHhHHHHhhc
Confidence 3568999999999999999999998753333444443 2111111 0000000 000 0001112223
Q ss_pred cCceeEEEEeCCCCh--HH---HHHHhhccCCC---CCCcEEEEEecchh
Q 001407 86 RRMKLLIVLDDVNEV--GQ---LKRLIGELDQF---GQGSRIVVTTRDKR 127 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~---~~~l~~~~~~~---~~gsrIiiTTR~~~ 127 (1083)
..++.++|+||++.. +. +..+....... ..+.+||+||....
T Consensus 82 ~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 82 KAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred cCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 456789999999864 22 33333333221 36788999888654
No 85
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.83 E-value=2.4e-07 Score=105.33 Aligned_cols=178 Identities=22% Similarity=0.235 Sum_probs=94.4
Q ss_pred CccccCCCCCcEEEeeCCCCcccccccccCC-CCCcEEeccCCcCcccCchhhhh----------ccccCeeccCCCCCC
Q 001407 508 PSSIECLTDLEVLDLRGCKRLKRISTSFCKL-RSLVTLILLGCLNLEHFPEILEK----------MEHLKRIYSDRTPIT 576 (1083)
Q Consensus 508 p~~i~~l~~L~~L~L~~~~~~~~lp~~l~~l-~~L~~L~L~~~~~~~~~p~~l~~----------l~~L~~L~l~~~~l~ 576 (1083)
|-+|..+..|+.|.|++|.+.. ... +..+ ..|++|.-.+ + +..+-..|.. ...|...+.+.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC~~-S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLICHN-S-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhhhc-c-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH
Confidence 5567778899999999987432 211 1111 2344443221 0 1111111111 124556667777777
Q ss_pred CCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccC
Q 001407 577 ELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLG 656 (1083)
Q Consensus 577 ~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 656 (1083)
.+..++.-++.|+.|+|+.|++...- .+..++.|++|+++.|.+..+|..-..-..|+.|.+++|.+.+-.. +.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~g---ie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRG---IEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhh---HHh
Confidence 77777777777777777777765432 5666777777777777777666432222236666666655332111 234
Q ss_pred CCCccEEEecCCCCCcCc--hhccCCCCCcEEEeeCCCCc
Q 001407 657 LSAMGLLHISDYAVREIP--QEIAYLSSLEILYLSGNNFE 694 (1083)
Q Consensus 657 ~~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~ 694 (1083)
+.+|+.||+++|-+.... ..+..+..|+.|.|.||.+.
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 455555555555444321 11334455555555555554
No 86
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.82 E-value=3.7e-05 Score=81.21 Aligned_cols=93 Identities=16% Similarity=0.147 Sum_probs=60.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCC-------Cc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP-------NI 77 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-------~~ 77 (1083)
.-+.++|.|++|+|||||++++++.... +|+..+|+..+.+.. ..+.++++.+....-....+.+.. ..
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~---~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~ 91 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERP---EEVTDMQRSVKGEVIASTFDEPPERHVQVAEMV 91 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCC---ccHHHHHHHhccEEEEecCCCCHHHHHHHHHHH
Confidence 3467899999999999999999997643 689999987665432 467788888833321111111110 01
Q ss_pred hHHHHH-HhcCceeEEEEeCCCChH
Q 001407 78 PHFTKE-RVRRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 78 ~~~~~~-~l~~kr~LlVlDdv~~~~ 101 (1083)
....+. +-.++++++++|++....
T Consensus 92 ~~~a~~~~~~G~~vll~iDei~r~a 116 (249)
T cd01128 92 LEKAKRLVEHGKDVVILLDSITRLA 116 (249)
T ss_pred HHHHHHHHHCCCCEEEEEECHHHhh
Confidence 122222 234789999999986543
No 87
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00042 Score=80.79 Aligned_cols=95 Identities=18% Similarity=0.232 Sum_probs=64.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEE-EecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIii-TTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. .+++.|...+....+...+|+ ||+...+...... ....+++++++.++..+.+.+.+-..+.
T Consensus 127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~S-Rc~~~ef~~ls~~el~~~L~~i~~~egi 205 (507)
T PRK06645 127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIIS-RCQRYDLRRLSFEEIFKLLEYITKQENL 205 (507)
T ss_pred CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHh-cceEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999864 457788777665555666655 4454455544432 3467999999999999999988754332
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
.. ..+....|++.++|.+-
T Consensus 206 ~i--e~eAL~~Ia~~s~GslR 224 (507)
T PRK06645 206 KT--DIEALRIIAYKSEGSAR 224 (507)
T ss_pred CC--CHHHHHHHHHHcCCCHH
Confidence 11 23446778888988763
No 88
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00028 Score=83.63 Aligned_cols=99 Identities=10% Similarity=0.102 Sum_probs=66.3
Q ss_pred ceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecchhHH-hhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDKRVL-EKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
+.-++|||+++... .++.|+..+....+..++|+||++.+-. .... .....+.++.++.++..+.+.+.+-.+...
T Consensus 119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIr-SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~ 197 (830)
T PRK07003 119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVL-SRCLQFNLKQMPAGHIVSHLERILGEERIA 197 (830)
T ss_pred CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhh-hheEEEecCCcCHHHHHHHHHHHHHHcCCC
Confidence 44578899998664 4777777666555678888888776433 2222 145679999999999999998876433221
Q ss_pred CchhHHHHHHHHHhhCCCc-hhHHHH
Q 001407 165 PEDLNWHSRSVVSYTKGNP-LVLEVL 189 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glP-Lal~~l 189 (1083)
-..+....|++.++|.. -|+..+
T Consensus 198 --id~eAL~lIA~~A~GsmRdALsLL 221 (830)
T PRK07003 198 --FEPQALRLLARAAQGSMRDALSLT 221 (830)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12345677888988864 455443
No 89
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.80 E-value=0.00046 Score=80.96 Aligned_cols=95 Identities=13% Similarity=0.128 Sum_probs=63.3
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+|+.. ...+.|+..+.....+.++|++|.+.. +..... .....++++.++.++..+.+.+.+-..+.
T Consensus 117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIl-SRCq~feFkpLs~eEI~k~L~~Il~kEgI 195 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVI-SRCLQFTLRPLAVDEITKHLGAILEKEQI 195 (702)
T ss_pred CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHH-HhhheeeccCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999765 456677766655456677887776653 222221 14578999999999999988877643332
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
. -..+....|++.++|.+-
T Consensus 196 ~--id~eAL~~IA~~S~GdLR 214 (702)
T PRK14960 196 A--ADQDAIWQIAESAQGSLR 214 (702)
T ss_pred C--CCHHHHHHHHHHcCCCHH
Confidence 1 223446778889988764
No 90
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.80 E-value=0.00048 Score=80.76 Aligned_cols=156 Identities=17% Similarity=0.182 Sum_probs=89.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCc--eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
..-+.|+|.+|+|||+||+++++.+..++. .++|+. ...+...+...+... ....+.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~ 208 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT-----------SEKFTNDFVNALRNN--------TMEEFKEK 208 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHHcC--------cHHHHHHH
Confidence 356899999999999999999998876643 244443 112233333332211 11334444
Q ss_pred hcCceeEEEEeCCCCh---H-HHHHHhhccCC-CCCCcEEEEEecch--hH---Hhhhcc--ccccEEEecCCCHHHHHH
Q 001407 85 VRRMKLLIVLDDVNEV---G-QLKRLIGELDQ-FGQGSRIVVTTRDK--RV---LEKFRG--EEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~---~-~~~~l~~~~~~-~~~gsrIiiTTR~~--~v---~~~~~~--~~~~~~~v~~L~~~ea~~ 152 (1083)
++ +.-+|||||++.. + ..+.+...+.. ...|..|||||... .+ .....+ ....++++++.+.++..+
T Consensus 209 ~~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~ 287 (450)
T PRK00149 209 YR-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIA 287 (450)
T ss_pred Hh-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHH
Confidence 44 3447889999642 1 12233322211 12355688887643 11 111111 134579999999999999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 153 HFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 153 Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
++.+.+-.... .--.+...-|++.+.|..-
T Consensus 288 il~~~~~~~~~--~l~~e~l~~ia~~~~~~~R 317 (450)
T PRK00149 288 ILKKKAEEEGI--DLPDEVLEFIAKNITSNVR 317 (450)
T ss_pred HHHHHHHHcCC--CCCHHHHHHHHcCcCCCHH
Confidence 99998743221 1223456778888877654
No 91
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.79 E-value=0.00025 Score=81.06 Aligned_cols=149 Identities=23% Similarity=0.317 Sum_probs=82.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCch-HHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~~~~~l 85 (1083)
++-|.++|++|+|||++|++++++....|-. +. . ..+......+ ..... ..+...-
T Consensus 165 p~gvLL~GppGtGKT~lAkaia~~~~~~~i~---v~-~----------~~l~~~~~g~---------~~~~i~~~f~~a~ 221 (389)
T PRK03992 165 PKGVLLYGPPGTGKTLLAKAVAHETNATFIR---VV-G----------SELVQKFIGE---------GARLVRELFELAR 221 (389)
T ss_pred CCceEEECCCCCChHHHHHHHHHHhCCCEEE---ee-h----------HHHhHhhccc---------hHHHHHHHHHHHH
Confidence 5668999999999999999999976543221 11 0 1111111000 00000 1122222
Q ss_pred cCceeEEEEeCCCCh-------------HH---HHHHhhccCCC--CCCcEEEEEecchhHHhhhc---cccccEEEecC
Q 001407 86 RRMKLLIVLDDVNEV-------------GQ---LKRLIGELDQF--GQGSRIVVTTRDKRVLEKFR---GEEKKIYRVNG 144 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~-------------~~---~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~ 144 (1083)
.....+|+||+++.. +. +..+...+... ..+.+||.||...+.....- +..+..++++.
T Consensus 222 ~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~ 301 (389)
T PRK03992 222 EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPL 301 (389)
T ss_pred hcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECC
Confidence 335678999998753 11 22233222221 23567787887654332211 12567899999
Q ss_pred CCHHHHHHHHHHhhcCCCCCC-chhHHHHHHHHHhhCCC
Q 001407 145 LEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~gl 182 (1083)
.+.++..++|+.++.+..... .++ ..+++.+.|.
T Consensus 302 P~~~~R~~Il~~~~~~~~~~~~~~~----~~la~~t~g~ 336 (389)
T PRK03992 302 PDEEGRLEILKIHTRKMNLADDVDL----EELAELTEGA 336 (389)
T ss_pred CCHHHHHHHHHHHhccCCCCCcCCH----HHHHHHcCCC
Confidence 999999999998875433222 233 4456666664
No 92
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.00035 Score=81.00 Aligned_cols=156 Identities=16% Similarity=0.172 Sum_probs=89.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCc--eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
.-+.|||.+|+|||+||+++++.+..... .++|+. ..++...+...+.... ...+++.+
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-----------~~~f~~~~~~~~~~~~--------~~~f~~~~ 191 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-----------SEKFLNDLVDSMKEGK--------LNEFREKY 191 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-----------HHHHHHHHHHHHhccc--------HHHHHHHH
Confidence 45899999999999999999998765542 344553 1223333333322110 13344444
Q ss_pred cCceeEEEEeCCCCh---HHH-HHHhhccCC-CCCCcEEEEEec-chhHHhhh----cc--ccccEEEecCCCHHHHHHH
Q 001407 86 RRMKLLIVLDDVNEV---GQL-KRLIGELDQ-FGQGSRIVVTTR-DKRVLEKF----RG--EEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR-~~~v~~~~----~~--~~~~~~~v~~L~~~ea~~L 153 (1083)
+.+.-+||+||++.. ... +.+...+.. ...|..||+||. +..-...+ .+ ....++++++.+.++-.++
T Consensus 192 ~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~I 271 (440)
T PRK14088 192 RKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKI 271 (440)
T ss_pred HhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHH
Confidence 444558999999743 111 222222211 123557888884 33222211 10 1345789999999999999
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
+.+.+-..... --.+.+.-|++.+.|.--
T Consensus 272 L~~~~~~~~~~--l~~ev~~~Ia~~~~~~~R 300 (440)
T PRK14088 272 ARKMLEIEHGE--LPEEVLNFVAENVDDNLR 300 (440)
T ss_pred HHHHHHhcCCC--CCHHHHHHHHhccccCHH
Confidence 99887432221 123456777777776543
No 93
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.77 E-value=0.0012 Score=76.37 Aligned_cols=153 Identities=14% Similarity=0.095 Sum_probs=84.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
.-+.|+|+.|+|||+||+++++.+......++|+. ...+...+...+... ....+++.++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~-----------~~~f~~~~~~~l~~~--------~~~~f~~~~~- 201 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR-----------SELFTEHLVSAIRSG--------EMQRFRQFYR- 201 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee-----------HHHHHHHHHHHHhcc--------hHHHHHHHcc-
Confidence 45789999999999999999998765544455654 122333333332211 0133444443
Q ss_pred ceeEEEEeCCCChH----HHHHHhhccCC-CCCCcEEEEEecch-h----HHhhhcc--ccccEEEecCCCHHHHHHHHH
Q 001407 88 MKLLIVLDDVNEVG----QLKRLIGELDQ-FGQGSRIVVTTRDK-R----VLEKFRG--EEKKIYRVNGLEFEEAFEHFC 155 (1083)
Q Consensus 88 kr~LlVlDdv~~~~----~~~~l~~~~~~-~~~gsrIiiTTR~~-~----v~~~~~~--~~~~~~~v~~L~~~ea~~Lf~ 155 (1083)
+.-++++||+.... ..+.+...+.. ...|..||+||... . +.....+ .....+++++++.++..+++.
T Consensus 202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~ 281 (445)
T PRK12422 202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE 281 (445)
T ss_pred cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence 34478889985432 11222222111 12356788888542 1 1122211 134678999999999999998
Q ss_pred HhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 156 NFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 156 ~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
+.+-..... --.+...-++..+.|.
T Consensus 282 ~k~~~~~~~--l~~evl~~la~~~~~d 306 (445)
T PRK12422 282 RKAEALSIR--IEETALDFLIEALSSN 306 (445)
T ss_pred HHHHHcCCC--CCHHHHHHHHHhcCCC
Confidence 877432211 1123344455555543
No 94
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.76 E-value=0.0004 Score=75.02 Aligned_cols=135 Identities=16% Similarity=0.168 Sum_probs=74.0
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHH
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 81 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~ 81 (1083)
.+...-+.++|++|+||||+|+.++..+...- ....++. ++ ..++......+. ...+
T Consensus 39 ~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~-~~--------~~~l~~~~~g~~------------~~~~ 97 (261)
T TIGR02881 39 SKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE-VE--------RADLVGEYIGHT------------AQKT 97 (261)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE-ec--------HHHhhhhhccch------------HHHH
Confidence 34566788999999999999999998653211 1112221 10 011111111000 0111
Q ss_pred HHHhcC-ceeEEEEeCCCC----------hHHHHHHhhccCCCCCCcEEEEEecchhHHh------hhccccccEEEecC
Q 001407 82 KERVRR-MKLLIVLDDVNE----------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLE------KFRGEEKKIYRVNG 144 (1083)
Q Consensus 82 ~~~l~~-kr~LlVlDdv~~----------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~------~~~~~~~~~~~v~~ 144 (1083)
++.+.. ..-+|++|+++. .++++.+...+........+|+++...+... .........++++.
T Consensus 98 ~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~ 177 (261)
T TIGR02881 98 REVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPD 177 (261)
T ss_pred HHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECC
Confidence 122211 124788999964 3356667666554434445666655433211 11112345688999
Q ss_pred CCHHHHHHHHHHhhc
Q 001407 145 LEFEEAFEHFCNFAF 159 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~ 159 (1083)
++.+|-.+++.+.+-
T Consensus 178 ~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 178 YTVEELMEIAERMVK 192 (261)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999987764
No 95
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.76 E-value=0.00062 Score=79.91 Aligned_cols=100 Identities=13% Similarity=0.132 Sum_probs=62.9
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +..+.|+..+.......++|++|.+. .+.....+ ....+++++++.++..+.+.+.+-..+.
T Consensus 118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi 196 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENI 196 (546)
T ss_pred CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999999754 45777777766555566666555443 44433221 4578999999999988887765433221
Q ss_pred CCchhHHHHHHHHHhhCCCc-hhHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNP-LVLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glP-Lal~~l 189 (1083)
.-.......+++.++|-+ -|+..+
T Consensus 197 --~~e~~Al~~Ia~~s~GdlR~alnlL 221 (546)
T PRK14957 197 --NSDEQSLEYIAYHAKGSLRDALSLL 221 (546)
T ss_pred --CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 122334567888888865 344444
No 96
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.76 E-value=2e-06 Score=97.96 Aligned_cols=122 Identities=22% Similarity=0.117 Sum_probs=83.6
Q ss_pred hhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEeeC
Q 001407 611 YLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYLSG 690 (1083)
Q Consensus 611 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~ 690 (1083)
.|...+.+.|.+..+..++..++.|+.|+|++|++...- .+..++.|++|||+.|.+..+|..-..--.|+.|.|++
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrn 241 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRN 241 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecc
Confidence 455556677777777777888888888888888865432 46678888888888888887775322222388888888
Q ss_pred CCCcccchhhhCCCCCCEeeccCcccCCCCC----CCCCCccEEeecCCC
Q 001407 691 NNFESLPAIIKQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCK 736 (1083)
Q Consensus 691 n~l~~lp~~l~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~l~~c~ 736 (1083)
|.++++- ++.+|.+|+.||+++|-+...-. ..+..|+.|.+.+|+
T Consensus 242 N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 242 NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 8888776 57788888888888875443211 112346666666665
No 97
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.76 E-value=7.9e-06 Score=83.82 Aligned_cols=65 Identities=15% Similarity=0.233 Sum_probs=37.7
Q ss_pred CCCccEEEecCCCCCcCc--hhccCCCCCcEEEeeCCCCcccc--hhhhCCCCCCEeeccCcccCCCCC
Q 001407 657 LSAMGLLHISDYAVREIP--QEIAYLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQSLP 721 (1083)
Q Consensus 657 ~~~L~~L~l~~~~l~~lp--~~l~~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~lp 721 (1083)
++++..+.+..|.+.+.. .....++.+-.|+|+.|+|.+.. +.+.+++.|..|.++++++...+.
T Consensus 198 Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 198 FPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred cccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 344455555555444331 22344566666777777666433 356677777777777777766554
No 98
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.0013 Score=73.84 Aligned_cols=96 Identities=14% Similarity=0.167 Sum_probs=63.7
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+.+.++|+|+++.. .....|+..+....++..+|++|.+.+ +..... .....+.+.+++.++..+++......
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~-SRc~~i~l~~l~~~~i~~~L~~~~~~--- 215 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIR-SRCRKLRLRPLAPEDVIDALAAAGPD--- 215 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhh-ccceEEECCCCCHHHHHHHHHHhccc---
Confidence 34668999998754 446666666654445677777777664 333322 25678999999999999999876411
Q ss_pred CCchhHHHHHHHHHhhCCCchhHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
.. .+....++..++|.|+....+
T Consensus 216 ~~---~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 216 LP---DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred CC---HHHHHHHHHHcCCCHHHHHHH
Confidence 11 111267899999999855444
No 99
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00061 Score=79.17 Aligned_cols=102 Identities=13% Similarity=0.100 Sum_probs=63.1
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. ++.+.++..+........+|++|.+ ..+...... ....+++++++.++....+.+.+.....
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~S-R~~vv~f~~l~~~el~~~L~~i~~~egi 194 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIIS-RCQVIEFRNISDELIIKRLQEVAEAEGI 194 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhc-CcEEEEECCccHHHHHHHHHHHHHHcCC
Confidence 45678999999754 3466677666543444544444443 444444332 4567999999999998888887643322
Q ss_pred CCchhHHHHHHHHHhhCCC-chhHHHHhh
Q 001407 164 CPEDLNWHSRSVVSYTKGN-PLVLEVLGS 191 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~gl-PLal~~l~~ 191 (1083)
. -..+....|+++++|- +.|+..+..
T Consensus 195 ~--i~~eal~~Ia~~s~GdlR~aln~Le~ 221 (472)
T PRK14962 195 E--IDREALSFIAKRASGGLRDALTMLEQ 221 (472)
T ss_pred C--CCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 1 1234467788877654 566655543
No 100
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.73 E-value=0.00038 Score=78.85 Aligned_cols=94 Identities=12% Similarity=0.087 Sum_probs=61.5
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++.. +..+.|+..+....++..+|++|.+. .+.....+ ....+.++.++.++..+.+.... + .
T Consensus 117 ~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~-~--~- 191 (394)
T PRK07940 117 RWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD-G--V- 191 (394)
T ss_pred CcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc-C--C-
Confidence 4457778998765 34456666655445567677666665 44434332 45789999999999998887432 1 1
Q ss_pred CchhHHHHHHHHHhhCCCchhHHHH
Q 001407 165 PEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
..+.+..++..++|.|.....+
T Consensus 192 ---~~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 192 ---DPETARRAARASQGHIGRARRL 213 (394)
T ss_pred ---CHHHHHHHHHHcCCCHHHHHHH
Confidence 1344778999999999754433
No 101
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.72 E-value=0.00049 Score=80.59 Aligned_cols=100 Identities=9% Similarity=0.100 Sum_probs=65.1
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEec-chhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
++.-++|+|+++.. ...+.|+..+..-..+.++|++|. ...+.....+ ....+.++.++.++..+.+.+.+-.+..
T Consensus 123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi 201 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGI 201 (700)
T ss_pred CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHH-HHHhcccCCCChHHHHHHHHHHHHHcCC
Confidence 45568999999765 457777777655445666555554 4455444332 4567999999999999988876643322
Q ss_pred CCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
.. ..+..+.|++.++|.|. |+..+
T Consensus 202 ~~--d~eAL~~IA~~A~Gs~RdALsLL 226 (700)
T PRK12323 202 AH--EVNALRLLAQAAQGSMRDALSLT 226 (700)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 11 23345778999999885 44433
No 102
>PRK06620 hypothetical protein; Validated
Probab=97.71 E-value=0.00034 Score=72.56 Aligned_cols=129 Identities=12% Similarity=0.045 Sum_probs=73.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
+.+.|||++|+|||+||+++++.... .++... . . . . +.. +
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~~~-----~--~----~--------------------~---~~~-~ 84 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNA-----YIIKDI-----F--F----N--------------------E---EIL-E 84 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCC-----EEcchh-----h--h----c--------------------h---hHH-h
Confidence 66899999999999999998765421 222100 0 0 0 0 001 1
Q ss_pred ceeEEEEeCCCChHH--HHHHhhccCCCCCCcEEEEEecchhH-------HhhhccccccEEEecCCCHHHHHHHHHHhh
Q 001407 88 MKLLIVLDDVNEVGQ--LKRLIGELDQFGQGSRIVVTTRDKRV-------LEKFRGEEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 88 kr~LlVlDdv~~~~~--~~~l~~~~~~~~~gsrIiiTTR~~~v-------~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..-++++||++..++ +-.+...+. ..|..||+|++.... ...+. ..-+++++++++++-.+++.+.+
T Consensus 85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~--~gl~~~l~~pd~~~~~~~l~k~~ 160 (214)
T PRK06620 85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIK--SVLSILLNSPDDELIKILIFKHF 160 (214)
T ss_pred cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHh--CCceEeeCCCCHHHHHHHHHHHH
Confidence 234688899985543 222222221 356789999885421 12222 34579999999999888887776
Q ss_pred cCCCCCCchhHHHHHHHHHhhCCC
Q 001407 159 FKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 159 ~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
-.... .--++..+-|++++.|-
T Consensus 161 ~~~~l--~l~~ev~~~L~~~~~~d 182 (214)
T PRK06620 161 SISSV--TISRQIIDFLLVNLPRE 182 (214)
T ss_pred HHcCC--CCCHHHHHHHHHHccCC
Confidence 32211 11133445555555444
No 103
>PRK04195 replication factor C large subunit; Provisional
Probab=97.70 E-value=0.0002 Score=84.61 Aligned_cols=152 Identities=15% Similarity=0.198 Sum_probs=88.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+.+.|+|++|+||||+|+++++++. |+. +.+. . ++. ... .....+........ ....
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~--~~~-ieln-a---sd~-r~~-~~i~~~i~~~~~~~-------------sl~~ 96 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYG--WEV-IELN-A---SDQ-RTA-DVIERVAGEAATSG-------------SLFG 96 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC--CCE-EEEc-c---ccc-ccH-HHHHHHHHHhhccC-------------cccC
Confidence 67899999999999999999999763 221 2221 1 111 111 22222222211100 0011
Q ss_pred CceeEEEEeCCCChH------HHHHHhhccCCCCCCcEEEEEecchh-HHh-hhccccccEEEecCCCHHHHHHHHHHhh
Q 001407 87 RMKLLIVLDDVNEVG------QLKRLIGELDQFGQGSRIVVTTRDKR-VLE-KFRGEEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~------~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~-~~~~~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
.++.+||+|+++... .++.+...+. ..+..||+|+.+.. ... ... .....++++.++.++....+.+.+
T Consensus 97 ~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lr-sr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 97 ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELR-NACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHh-ccceEEEecCCCHHHHHHHHHHHH
Confidence 357789999997642 2555554443 23445677765432 111 111 145678999999999998888776
Q ss_pred cCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 159 FKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 159 ~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
......- ..+....|++.++|..-.
T Consensus 174 ~~egi~i--~~eaL~~Ia~~s~GDlR~ 198 (482)
T PRK04195 174 RKEGIEC--DDEALKEIAERSGGDLRS 198 (482)
T ss_pred HHcCCCC--CHHHHHHHHHHcCCCHHH
Confidence 4433221 235578888888886543
No 104
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.70 E-value=9.4e-05 Score=81.74 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=61.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhccc-CceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC-------chH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-------IPH 79 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-------~~~ 79 (1083)
+.++|+|++|.|||||++.+++.+..+ |+..+|+..+++.. ..+.++++.+.........+.+... ...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~---~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e 245 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERP---EEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIE 245 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCC---ccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHH
Confidence 568999999999999999999987655 99999998765432 4677888888655322222211111 111
Q ss_pred HHH-HHhcCceeEEEEeCCCChH
Q 001407 80 FTK-ERVRRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 80 ~~~-~~l~~kr~LlVlDdv~~~~ 101 (1083)
..+ .+-.+++++|++|.+....
T Consensus 246 ~Ae~~~~~GkdVVLlIDEitR~a 268 (415)
T TIGR00767 246 KAKRLVEHKKDVVILLDSITRLA 268 (415)
T ss_pred HHHHHHHcCCCeEEEEEChhHHH
Confidence 111 1235789999999997554
No 105
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=97.70 E-value=0.00026 Score=84.26 Aligned_cols=182 Identities=14% Similarity=0.099 Sum_probs=91.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhccc-----Cc--eEEEEeeccccccccCCHHHHHHHHHHhhhcccccc--CCCCc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHE-----FE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEV--AGPNI 77 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-----F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~--~~~~~ 77 (1083)
..++-|+|++|.|||+.++.|..++... .. .++++.+..- .....+...+..++....... ...+.
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L-----stp~sIYqvI~qqL~g~~P~~GlsS~ev 855 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV-----VHPNAAYQVLYKQLFNKKPPNALNSFKI 855 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc-----CCHHHHHHHHHHHHcCCCCCccccHHHH
Confidence 4677899999999999999999866421 11 2345543221 233455555555553222111 11112
Q ss_pred hHHHHHHhc---CceeEEEEeCCCChH--HHHHHhhccCCC-CCCcEEEE--EecchhHHh----hhcc-ccccEEEecC
Q 001407 78 PHFTKERVR---RMKLLIVLDDVNEVG--QLKRLIGELDQF-GQGSRIVV--TTRDKRVLE----KFRG-EEKKIYRVNG 144 (1083)
Q Consensus 78 ~~~~~~~l~---~kr~LlVlDdv~~~~--~~~~l~~~~~~~-~~gsrIii--TTR~~~v~~----~~~~-~~~~~~~v~~ 144 (1083)
...+.+.+. +...+||||+|+... +-+.|..-+.|. ..+++|+| +|.+.++.. .+.. -....+..++
T Consensus 856 LerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~P 935 (1164)
T PTZ00112 856 LDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSP 935 (1164)
T ss_pred HHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCC
Confidence 233333331 124589999997543 212233222222 24666555 343322211 1111 0122356699
Q ss_pred CCHHHHHHHHHHhhcCC-CCCCch-hHHHHHHHHHhhCCCchhHHHHhhhh
Q 001407 145 LEFEEAFEHFCNFAFKE-NHCPED-LNWHSRSVVSYTKGNPLVLEVLGSSL 193 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~~-~~~~~~-~~~l~~~i~~~~~glPLal~~l~~~L 193 (1083)
.+.+|-.+++..++-.. ....++ ..-+|+.++...|-.-.||.++-.+.
T Consensus 936 YTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 936 YKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 99999999999887432 112222 22333333333344456666554433
No 106
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.70 E-value=0.00067 Score=77.43 Aligned_cols=101 Identities=11% Similarity=0.046 Sum_probs=64.6
Q ss_pred cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEE-EecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCC
Q 001407 86 RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKEN 162 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIii-TTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 162 (1083)
.++..++|+|+++.. +.++.|+..+........+|. ||....+.....+ ....|.++.++.++..+.+.+.+-..+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S-RCq~~~f~~ls~~~i~~~L~~i~~~Eg 197 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS-RCQDFIFKKVPLSVLQDYSEKLCKIEN 197 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh-hhheeeecCCCHHHHHHHHHHHHHHcC
Confidence 345668999999754 457888777654334555444 4444444444322 446799999999999888887764332
Q ss_pred CCCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 163 HCPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 163 ~~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
.. -..+....|++.++|.+- |+..+
T Consensus 198 i~--~e~eAL~~Ia~~S~Gd~RdAL~lL 223 (484)
T PRK14956 198 VQ--YDQEGLFWIAKKGDGSVRDMLSFM 223 (484)
T ss_pred CC--CCHHHHHHHHHHcCChHHHHHHHH
Confidence 21 123456889999999874 44333
No 107
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.69 E-value=0.00044 Score=80.04 Aligned_cols=156 Identities=19% Similarity=0.204 Sum_probs=87.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCc--eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFE--GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~--~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.|+|..|+|||+||+++++.+..+.. .++|+. ...+...+...+... ....+.+.+
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~-----------~~~~~~~~~~~~~~~--------~~~~~~~~~ 197 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS-----------SEKFTNDFVNALRNN--------KMEEFKEKY 197 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE-----------HHHHHHHHHHHHHcC--------CHHHHHHHH
Confidence 46899999999999999999998766542 344543 122233333332211 113344444
Q ss_pred cCceeEEEEeCCCChH---H-HHHHhhccCCC-CCCcEEEEEecch-hHHhh----hcc--ccccEEEecCCCHHHHHHH
Q 001407 86 RRMKLLIVLDDVNEVG---Q-LKRLIGELDQF-GQGSRIVVTTRDK-RVLEK----FRG--EEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~---~-~~~l~~~~~~~-~~gsrIiiTTR~~-~v~~~----~~~--~~~~~~~v~~L~~~ea~~L 153 (1083)
++ .-+|||||++... . .+.+...+... ..|..|||||... ..... ..+ .....+++++.+.++..++
T Consensus 198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i 276 (405)
T TIGR00362 198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI 276 (405)
T ss_pred Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence 43 3378899996431 1 12233222111 2355688877642 21111 111 1234689999999999999
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
+.+.+-..... -..+....|++.+.|..-.
T Consensus 277 l~~~~~~~~~~--l~~e~l~~ia~~~~~~~r~ 306 (405)
T TIGR00362 277 LQKKAEEEGLE--LPDEVLEFIAKNIRSNVRE 306 (405)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHhcCCCHHH
Confidence 99887433221 1234566677777666543
No 108
>PF14516 AAA_35: AAA-like domain
Probab=97.68 E-value=0.0031 Score=70.46 Aligned_cols=183 Identities=11% Similarity=0.167 Sum_probs=102.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeecccc-ccccCCHHHHHHHHH----Hhhhcccc-------cc-C
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGN-SETAGGLEHLQKQML----STTLSEKL-------EV-A 73 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~-~~~~~~l~~l~~~ll----~~l~~~~~-------~~-~ 73 (1083)
-+.+.|.|+-.+|||+|..++.+...++=-.++++. .... +..........+.+. ..+.-... .. .
T Consensus 31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 357899999999999999999998765433444554 3322 212134444444443 33322110 01 1
Q ss_pred CCCchHHHHHHh---cCceeEEEEeCCCChHH----HHHHhhccC-CCC-------CCcEEEEEecchhH--Hhhh-cc-
Q 001407 74 GPNIPHFTKERV---RRMKLLIVLDDVNEVGQ----LKRLIGELD-QFG-------QGSRIVVTTRDKRV--LEKF-RG- 134 (1083)
Q Consensus 74 ~~~~~~~~~~~l---~~kr~LlVlDdv~~~~~----~~~l~~~~~-~~~-------~gsrIiiTTR~~~v--~~~~-~~- 134 (1083)
..+....+.+.+ .+++++|++|+|+..-. .+.+.+.+. |.. ...-.+|.....+. .... .+
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP 189 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP 189 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence 112224444433 25799999999875321 112222111 100 11122222222211 1111 11
Q ss_pred -ccccEEEecCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCC
Q 001407 135 -EEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK 196 (1083)
Q Consensus 135 -~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~ 196 (1083)
.....+++++|+.+|..+|...+... . -....+++...+||+|--+..++..+...
T Consensus 190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 190 FNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLVQKACYLLVEE 246 (331)
T ss_pred cccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 24456899999999999999877422 1 11227899999999999888888888653
No 109
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=97.67 E-value=0.00072 Score=75.89 Aligned_cols=160 Identities=16% Similarity=0.200 Sum_probs=89.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+.+.++|..|+||||+|+.++++.........++. ... +.. .+...+...+ ........ ..
T Consensus 37 ~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~~-~~~-~~~~~~~~~i-~~~~~~~~-------------~~ 99 (319)
T PRK00440 37 NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LNA-SDE-RGIDVIRNKI-KEFARTAP-------------VG 99 (319)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ecc-ccc-cchHHHHHHH-HHHHhcCC-------------CC
Confidence 3455799999999999999999987643211111221 100 111 1111111111 11110000 00
Q ss_pred cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCC
Q 001407 86 RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKEN 162 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 162 (1083)
...+-+||+|+++.. +..+.+...+....+.+++|+++... .+...... ....++++++++++...++...+-...
T Consensus 100 ~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s-r~~~~~~~~l~~~ei~~~l~~~~~~~~ 178 (319)
T PRK00440 100 GAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS-RCAVFRFSPLKKEAVAERLRYIAENEG 178 (319)
T ss_pred CCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-HhheeeeCCCCHHHHHHHHHHHHHHcC
Confidence 123558999998754 33455555555555667788777433 22222211 334689999999999999888774433
Q ss_pred CCCchhHHHHHHHHHhhCCCchh
Q 001407 163 HCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 163 ~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
.. -..+.+..+++.++|.+--
T Consensus 179 ~~--i~~~al~~l~~~~~gd~r~ 199 (319)
T PRK00440 179 IE--ITDDALEAIYYVSEGDMRK 199 (319)
T ss_pred CC--CCHHHHHHHHHHcCCCHHH
Confidence 21 1234577888899988643
No 110
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.62 E-value=7.6e-05 Score=55.14 Aligned_cols=39 Identities=28% Similarity=0.514 Sum_probs=24.0
Q ss_pred CccEEEecCCCCCcCchhccCCCCCcEEEeeCCCCcccc
Q 001407 659 AMGLLHISDYAVREIPQEIAYLSSLEILYLSGNNFESLP 697 (1083)
Q Consensus 659 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp 697 (1083)
+|++|++++|.++++|..++.+++|+.|++++|++++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 466666666666666666666666666666666666554
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=97.61 E-value=0.00079 Score=79.86 Aligned_cols=95 Identities=9% Similarity=0.114 Sum_probs=61.2
Q ss_pred CceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++... ..+.|+..+.......++|++|.+. .+.....+ ....++++.++.++..+.+.+.+-..+.
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrS-RC~~f~f~~Ls~eeI~~~L~~Il~kEgi 196 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLS-RCLQFVLRNMTAQQVADHLAHVLDSEKI 196 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHH-HHhhhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456689999997654 3556666655444566777777654 33322211 3456888899999999988877643332
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
. -..+....|++.++|.+.
T Consensus 197 ~--id~eAL~~Ia~~A~GslR 215 (709)
T PRK08691 197 A--YEPPALQLLGRAAAGSMR 215 (709)
T ss_pred C--cCHHHHHHHHHHhCCCHH
Confidence 1 123456889999998874
No 112
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.60 E-value=0.00046 Score=78.89 Aligned_cols=131 Identities=22% Similarity=0.336 Sum_probs=75.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC-chHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~~~~~l 85 (1083)
.+-|.++|++|+|||++|++++++....|-. +.. + .+......+ +.. ....+....
T Consensus 217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi~---V~~----s-------eL~~k~~Ge---------~~~~vr~lF~~A~ 273 (438)
T PTZ00361 217 PKGVILYGPPGTGKTLLAKAVANETSATFLR---VVG----S-------ELIQKYLGD---------GPKLVRELFRVAE 273 (438)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEE---Eec----c-------hhhhhhcch---------HHHHHHHHHHHHH
Confidence 4568899999999999999999987655421 110 0 011111000 000 001222222
Q ss_pred cCceeEEEEeCCCChH----------------HHHHHhhccCCC--CCCcEEEEEecchhHHhhhc---cccccEEEecC
Q 001407 86 RRMKLLIVLDDVNEVG----------------QLKRLIGELDQF--GQGSRIVVTTRDKRVLEKFR---GEEKKIYRVNG 144 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~ 144 (1083)
...+.+|+||+++... .+..++..+..+ ..+.+||.||...+.....- +..+..++++.
T Consensus 274 ~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~ 353 (438)
T PTZ00361 274 ENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPN 353 (438)
T ss_pred hCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCC
Confidence 3456788888864321 122233333221 24567888888665544321 23577899999
Q ss_pred CCHHHHHHHHHHhhcC
Q 001407 145 LEFEEAFEHFCNFAFK 160 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~ 160 (1083)
.+.++..++|..++.+
T Consensus 354 Pd~~~R~~Il~~~~~k 369 (438)
T PTZ00361 354 PDEKTKRRIFEIHTSK 369 (438)
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999988643
No 113
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.60 E-value=0.00066 Score=77.98 Aligned_cols=95 Identities=8% Similarity=0.092 Sum_probs=62.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+.+-++|+|+++.. ++++.+...+....+.+.+|++| +...+...... ....++++++++++..+.+...+-....
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~ 204 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGI 204 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCC
Confidence 34568899998754 45777777766555677766655 43444433221 3457899999999998888776532221
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
.-..+.+..+++.++|.+-
T Consensus 205 --~i~~~al~~l~~~s~g~lr 223 (397)
T PRK14955 205 --SVDADALQLIGRKAQGSMR 223 (397)
T ss_pred --CCCHHHHHHHHHHcCCCHH
Confidence 1224457889999999774
No 114
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.59 E-value=0.0016 Score=74.19 Aligned_cols=99 Identities=11% Similarity=0.120 Sum_probs=65.2
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++.. ...+.+...+....+.+.+|++|.+.+ +...... ....++.+++++++..+++...+-.....
T Consensus 117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~s-r~~~~~~~~~~~~~l~~~l~~~~~~~g~~ 195 (355)
T TIGR02397 117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILS-RCQRFDFKRIPLEDIVERLKKILDKEGIK 195 (355)
T ss_pred CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHh-heeEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 4558889998755 456677776655456677777775554 3333321 34578899999999999988876433321
Q ss_pred CchhHHHHHHHHHhhCCCchhHHHH
Q 001407 165 PEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
- ..+.+..+++.++|.|..+...
T Consensus 196 i--~~~a~~~l~~~~~g~~~~a~~~ 218 (355)
T TIGR02397 196 I--EDEALELIARAADGSLRDALSL 218 (355)
T ss_pred C--CHHHHHHHHHHcCCChHHHHHH
Confidence 1 2355778899999988655433
No 115
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.58 E-value=0.00089 Score=74.78 Aligned_cols=98 Identities=10% Similarity=0.177 Sum_probs=63.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEE-EEecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIV-VTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIi-iTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. ...+.|+..+.....+..+| +|++...+.....+ ....+.+.+++.++..+++...+....
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~- 217 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG- 217 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC-
Confidence 35668999999754 34566666655434455544 44444444444332 446899999999999999987432211
Q ss_pred CCchhHHHHHHHHHhhCCCchhHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
-..+.+..+++.++|.|.....+
T Consensus 218 ---~~~~~~~~i~~~s~G~pr~Al~l 240 (351)
T PRK09112 218 ---SDGEITEALLQRSKGSVRKALLL 240 (351)
T ss_pred ---CCHHHHHHHHHHcCCCHHHHHHH
Confidence 11344678999999999755444
No 116
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.56 E-value=0.00092 Score=77.59 Aligned_cols=135 Identities=19% Similarity=0.360 Sum_probs=75.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccC-----ceEEEEeeccccc--ccc-CCHHHHHHHHHHhhhccccccCCCCch
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEF-----EGSCFVSDVRGNS--ETA-GGLEHLQKQMLSTTLSEKLEVAGPNIP 78 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F-----~~~~~~~~~~~~~--~~~-~~l~~l~~~ll~~l~~~~~~~~~~~~~ 78 (1083)
.+-|.++|++|+|||++|+++++.+...+ ....|+. +.... ... .......+.++
T Consensus 216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~-v~~~eLl~kyvGete~~ir~iF---------------- 278 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN-IKGPELLNKYVGETERQIRLIF---------------- 278 (512)
T ss_pred CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe-ccchhhcccccchHHHHHHHHH----------------
Confidence 45689999999999999999999875542 2233442 21100 000 00001111111
Q ss_pred HHHHHH-hcCceeEEEEeCCCChH---------H-----HHHHhhccCCCC--CCcEEEEEecchhHHhhhc---ccccc
Q 001407 79 HFTKER-VRRMKLLIVLDDVNEVG---------Q-----LKRLIGELDQFG--QGSRIVVTTRDKRVLEKFR---GEEKK 138 (1083)
Q Consensus 79 ~~~~~~-l~~kr~LlVlDdv~~~~---------~-----~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~~---~~~~~ 138 (1083)
...++. ..+++++|+||+++..- + +..++..+.... .+..||.||...+.....- +..+.
T Consensus 279 ~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~ 358 (512)
T TIGR03689 279 QRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDV 358 (512)
T ss_pred HHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccce
Confidence 111111 13468999999986421 1 233444333222 3445666666554433211 13567
Q ss_pred EEEecCCCHHHHHHHHHHhh
Q 001407 139 IYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 139 ~~~v~~L~~~ea~~Lf~~~a 158 (1083)
.++++..+.+++.++|.++.
T Consensus 359 ~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 359 KIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred EEEeCCCCHHHHHHHHHHHh
Confidence 79999999999999999886
No 117
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=1e-05 Score=73.59 Aligned_cols=105 Identities=17% Similarity=0.322 Sum_probs=79.4
Q ss_pred hhhhhcccccccCCCchh---hcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCchhccCCCCCcEEEe
Q 001407 612 LYYILAAASAISQLPSSV---ALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIPQEIAYLSSLEILYL 688 (1083)
Q Consensus 612 L~~L~l~~~~i~~lp~~~---~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~L 688 (1083)
+..++++.|.+..++... .....|+..+|++|.+ .++|..+...++.++.|++++|.+.++|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhccc
Confidence 445566666665554433 3445566678888773 445666666778889999999999999999999999999999
Q ss_pred eCCCCcccchhhhCCCCCCEeeccCcccC
Q 001407 689 SGNNFESLPAIIKQMSQLRFIHLEDFNML 717 (1083)
Q Consensus 689 s~n~l~~lp~~l~~l~~L~~L~L~~~~~l 717 (1083)
+.|.+...|..+..+.+|-.|+.-+|...
T Consensus 108 ~~N~l~~~p~vi~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 108 RFNPLNAEPRVIAPLIKLDMLDSPENARA 136 (177)
T ss_pred ccCccccchHHHHHHHhHHHhcCCCCccc
Confidence 99999999988877888888888776543
No 118
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.55 E-value=0.0016 Score=72.12 Aligned_cols=94 Identities=12% Similarity=0.184 Sum_probs=61.9
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
.|+ +|+|+++.. +..+.|+..+..-.+++.+|+||.+.+ +.....+ ....+.+.+++.+++.+.+.... ..
T Consensus 107 ~kv-~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~~L~~~~-~~--- 180 (328)
T PRK05707 107 RKV-VLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQWLQQAL-PE--- 180 (328)
T ss_pred CeE-EEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHHHHHHhc-cc---
Confidence 344 467998754 456667666655456778888887764 4333322 45679999999999999987653 11
Q ss_pred CchhHHHHHHHHHhhCCCchhHHHH
Q 001407 165 PEDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
...+.+..++..++|.|+....+
T Consensus 181 --~~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 181 --SDERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred --CChHHHHHHHHHcCCCHHHHHHH
Confidence 11233567789999999755444
No 119
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.54 E-value=0.00085 Score=76.24 Aligned_cols=152 Identities=20% Similarity=0.219 Sum_probs=84.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+-|.++|++|.|||++|+++++.....|- .+. . ..+......+.. ..+...+....
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi---~i~--~---------s~l~~k~~ge~~--------~~lr~lf~~A~ 235 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFI---RVV--G---------SEFVQKYLGEGP--------RMVRDVFRLAR 235 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe--h---------HHHHHHhcchhH--------HHHHHHHHHHH
Confidence 3577999999999999999999997654432 111 0 011111111000 00002222223
Q ss_pred cCceeEEEEeCCCCh------------H----HHHHHhhccCCC--CCCcEEEEEecchhHHhhh---ccccccEEEecC
Q 001407 86 RRMKLLIVLDDVNEV------------G----QLKRLIGELDQF--GQGSRIVVTTRDKRVLEKF---RGEEKKIYRVNG 144 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~------------~----~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~---~~~~~~~~~v~~ 144 (1083)
...+.+|++|+++.. . .+..++..+..+ ..+..||.||...+..... .+..+..++++.
T Consensus 236 ~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~ 315 (398)
T PTZ00454 236 ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPL 315 (398)
T ss_pred hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCC
Confidence 456789999997642 1 122333333322 2456788888866544321 123567799999
Q ss_pred CCHHHHHHHHHHhhcCCCC-CCchhHHHHHHHHHhhCCCc
Q 001407 145 LEFEEAFEHFCNFAFKENH-CPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~i~~~~~glP 183 (1083)
.+.++..++|..+.-+... ...++ .+++..+.|.-
T Consensus 316 P~~~~R~~Il~~~~~~~~l~~dvd~----~~la~~t~g~s 351 (398)
T PTZ00454 316 PDRRQKRLIFQTITSKMNLSEEVDL----EDFVSRPEKIS 351 (398)
T ss_pred cCHHHHHHHHHHHHhcCCCCcccCH----HHHHHHcCCCC
Confidence 9999999999877633221 11233 45556666653
No 120
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.54 E-value=0.0015 Score=75.65 Aligned_cols=154 Identities=16% Similarity=0.222 Sum_probs=91.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc---------------------cCceEEEEeeccccccccCCHHHHHHHHHHhh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH---------------------EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT 65 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~---------------------~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 65 (1083)
.+-+.++|+.|+||||+|+.++..+-. .+..++.+... + . .++.++. ++....
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaa---s-~-~~vddIR-~Iie~~ 108 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAA---S-N-TSVDDIK-VILENS 108 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecc---c-C-CCHHHHH-HHHHHH
Confidence 347889999999999999999875421 11222222211 0 0 2222221 222111
Q ss_pred hccccccCCCCchHHHHHHhcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEe
Q 001407 66 LSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v 142 (1083)
... -..+++-++|+|+++.. +..+.|+..+....+..++|++|.+ +.+...... ....+++
T Consensus 109 ~~~---------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~S-Rc~~~~f 172 (491)
T PRK14964 109 CYL---------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIIS-RCQRFDL 172 (491)
T ss_pred Hhc---------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHH-hheeeec
Confidence 100 01234567999998754 4477777777655567776666644 444444322 4567999
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 143 NGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
+.++.++..+.+.+.+-.++..- ..+.+..|++.++|.+-
T Consensus 173 ~~l~~~el~~~L~~ia~~Egi~i--~~eAL~lIa~~s~GslR 212 (491)
T PRK14964 173 QKIPTDKLVEHLVDIAKKENIEH--DEESLKLIAENSSGSMR 212 (491)
T ss_pred ccccHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCCHH
Confidence 99999999999988775433221 23446778888888764
No 121
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.54 E-value=4e-05 Score=78.77 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=47.7
Q ss_pred CCCCCcEEEeeCCCCcccc--hhhhCCCCCCEeeccCcccCCC--CC--CCCCCccEEeecCCCCCCcCC
Q 001407 679 YLSSLEILYLSGNNFESLP--AIIKQMSQLRFIHLEDFNMLQS--LP--ELPLCLKYLHLIDCKMLQSLP 742 (1083)
Q Consensus 679 ~l~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~L~~~~~l~~--lp--~~~~~L~~L~l~~c~~l~~l~ 742 (1083)
-+|++..+-+..|.+.+.. .+...++.+..|+|+.+++-.- +. ..++.|..|.+.+++....+.
T Consensus 197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~ 266 (418)
T KOG2982|consen 197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLR 266 (418)
T ss_pred hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccccc
Confidence 4788999999999887554 4566788888899988765321 11 346789999999998877665
No 122
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.54 E-value=0.0023 Score=71.56 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=101.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
...+.|||..|.|||.|++++.+......+...++. .........+...+... -...+++..
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y---------~~se~f~~~~v~a~~~~--------~~~~Fk~~y- 174 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY---------LTSEDFTNDFVKALRDN--------EMEKFKEKY- 174 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe---------ccHHHHHHHHHHHHHhh--------hHHHHHHhh-
Confidence 567899999999999999999998777766433332 11222333333332221 114556555
Q ss_pred CceeEEEEeCCCChHH----HHHHhhccCC-CCCCcEEEEEecch---------hHHhhhccccccEEEecCCCHHHHHH
Q 001407 87 RMKLLIVLDDVNEVGQ----LKRLIGELDQ-FGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~----~~~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~ 152 (1083)
.-=++++||++-... -+++...+.. ...|-+||+|++.. .+...+. ..-++++.+.+++....
T Consensus 175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~--~Gl~~~I~~Pd~e~r~a 251 (408)
T COG0593 175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLE--WGLVVEIEPPDDETRLA 251 (408)
T ss_pred -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHh--ceeEEeeCCCCHHHHHH
Confidence 344888999854221 2223322221 12344899998543 2233333 55789999999999999
Q ss_pred HHHHhhcCCC--CCCchhHHHHHHHHHhhCCCchhHHHHhhhh--cCC--CHHHHHHHHHHHhh
Q 001407 153 HFCNFAFKEN--HCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL--CLK--RKSHWGKVLHDLNR 210 (1083)
Q Consensus 153 Lf~~~a~~~~--~~~~~~~~l~~~i~~~~~glPLal~~l~~~L--~~~--~~~~w~~~l~~l~~ 210 (1083)
.+.+.+-... -+.+-..-+++++-+-..-+.-|+..+..+- .++ +.+..++++..+..
T Consensus 252 iL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a~~~~~~iTi~~v~e~L~~~~~ 315 (408)
T COG0593 252 ILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFALFTKRAITIDLVKEILKDLLR 315 (408)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcCccCcHHHHHHHHHHhhc
Confidence 9998764332 2223333344444433333444443333221 111 44555555554433
No 123
>PRK08116 hypothetical protein; Validated
Probab=97.53 E-value=0.00032 Score=75.47 Aligned_cols=101 Identities=24% Similarity=0.303 Sum_probs=56.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
+-+.++|.+|+|||.||.++++.+..+...++|+. ...+...+........ ......+.+.+.+
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~-----------~~~ll~~i~~~~~~~~-----~~~~~~~~~~l~~ 178 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN-----------FPQLLNRIKSTYKSSG-----KEDENEIIRSLVN 178 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-----------HHHHHHHHHHHHhccc-----cccHHHHHHHhcC
Confidence 45899999999999999999998766644555554 2223333332221110 0111234444554
Q ss_pred ceeEEEEeCCC--ChHHH--HHHhhccCC-CCCCcEEEEEecc
Q 001407 88 MKLLIVLDDVN--EVGQL--KRLIGELDQ-FGQGSRIVVTTRD 125 (1083)
Q Consensus 88 kr~LlVlDdv~--~~~~~--~~l~~~~~~-~~~gsrIiiTTR~ 125 (1083)
-. ||||||+. ...+| +.+..-+.. ...|..+||||..
T Consensus 179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 44 89999993 22222 222222221 2346678999874
No 124
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=97.52 E-value=0.0013 Score=78.36 Aligned_cols=101 Identities=12% Similarity=0.141 Sum_probs=65.5
Q ss_pred cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCC
Q 001407 86 RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKEN 162 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~ 162 (1083)
.+++-++|+|+++.. ...+.|+..+.......++|++|.+. .+.....+ ....|.++.++.++..+.+.+.+-...
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~ 195 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILS-RCLQFHLKALDVEQIRQQLEHILQAEQ 195 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHh-hheEeeCCCCCHHHHHHHHHHHHHHcC
Confidence 355678999999754 45777776665545566666655554 44433322 457899999999999999887653322
Q ss_pred CCCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 163 HCPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 163 ~~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
... .......|++.++|.+- |+..+
T Consensus 196 i~~--e~~aL~~Ia~~s~Gs~R~Al~ll 221 (647)
T PRK07994 196 IPF--EPRALQLLARAADGSMRDALSLT 221 (647)
T ss_pred CCC--CHHHHHHHHHHcCCCHHHHHHHH
Confidence 211 23445778999999775 44444
No 125
>CHL00181 cbbX CbbX; Provisional
Probab=97.51 E-value=0.0021 Score=69.91 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=75.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhccc-C-ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHE-F-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..|.++|++|+||||+|+.++...... + ...-|+. .....+......+.. ......+.+.
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~---------v~~~~l~~~~~g~~~--------~~~~~~l~~a- 121 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT---------VTRDDLVGQYIGHTA--------PKTKEVLKKA- 121 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE---------ecHHHHHHHHhccch--------HHHHHHHHHc-
Confidence 458899999999999999998864321 1 1111222 111122222211100 0000222221
Q ss_pred cCceeEEEEeCCCC-----------hHHHHHHhhccCCCCCCcEEEEEecchhHHh------hhccccccEEEecCCCHH
Q 001407 86 RRMKLLIVLDDVNE-----------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLE------KFRGEEKKIYRVNGLEFE 148 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~-----------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~------~~~~~~~~~~~v~~L~~~ 148 (1083)
..-+|++|+++. .+..+.|...+.....+.+||+++....+.. .........++.++++.+
T Consensus 122 --~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~ 199 (287)
T CHL00181 122 --MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPE 199 (287)
T ss_pred --cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHH
Confidence 234889999864 2345566665554445667777776543321 111225568999999999
Q ss_pred HHHHHHHHhhcC
Q 001407 149 EAFEHFCNFAFK 160 (1083)
Q Consensus 149 ea~~Lf~~~a~~ 160 (1083)
|..+++.+.+-+
T Consensus 200 el~~I~~~~l~~ 211 (287)
T CHL00181 200 ELLQIAKIMLEE 211 (287)
T ss_pred HHHHHHHHHHHH
Confidence 999999887643
No 126
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.50 E-value=0.00067 Score=64.77 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhc
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
|.|+|++|+||||+|+.+++...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 67999999999999999999874
No 127
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.49 E-value=0.00085 Score=73.06 Aligned_cols=130 Identities=15% Similarity=0.129 Sum_probs=72.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-|.++|++|+|||++|+.++..+...- ....|+... ...+...+.. ... ......+.+.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~---------~~~l~~~~~g---~~~-----~~~~~~~~~a-- 120 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT---------RDDLVGQYIG---HTA-----PKTKEILKRA-- 120 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec---------HHHHhHhhcc---cch-----HHHHHHHHHc--
Confidence 588999999999999999887654321 111233210 1112111111 000 0011222221
Q ss_pred CceeEEEEeCCCCh-----------HHHHHHhhccCCCCCCcEEEEEecchhHHhhh------ccccccEEEecCCCHHH
Q 001407 87 RMKLLIVLDDVNEV-----------GQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF------RGEEKKIYRVNGLEFEE 149 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~------~~~~~~~~~v~~L~~~e 149 (1083)
..-+|+||++... +.++.|...+.....+.+||+++.....-..+ .......+++++++.+|
T Consensus 121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed 199 (284)
T TIGR02880 121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE 199 (284)
T ss_pred -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence 2357888998632 23455666555445566777776543222111 11135679999999999
Q ss_pred HHHHHHHhh
Q 001407 150 AFEHFCNFA 158 (1083)
Q Consensus 150 a~~Lf~~~a 158 (1083)
-.+++.+.+
T Consensus 200 l~~I~~~~l 208 (284)
T TIGR02880 200 LLVIAGLML 208 (284)
T ss_pred HHHHHHHHH
Confidence 999988876
No 128
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.48 E-value=0.0015 Score=76.84 Aligned_cols=150 Identities=19% Similarity=0.228 Sum_probs=85.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+.|||..|.|||.|++++++.....+ ..++|+. ...+..++...+... ....++++++
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-----------aeef~~el~~al~~~--------~~~~f~~~y~ 376 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-----------SEEFTNEFINSIRDG--------KGDSFRRRYR 376 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-----------HHHHHHHHHHHHHhc--------cHHHHHHHhh
Confidence 489999999999999999999875533 2344553 223333333332211 0133444444
Q ss_pred CceeEEEEeCCCCh---HHH-HHHhhccCC-CCCCcEEEEEecch---------hHHhhhccccccEEEecCCCHHHHHH
Q 001407 87 RMKLLIVLDDVNEV---GQL-KRLIGELDQ-FGQGSRIVVTTRDK---------RVLEKFRGEEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~---~~~-~~l~~~~~~-~~~gsrIiiTTR~~---------~v~~~~~~~~~~~~~v~~L~~~ea~~ 152 (1083)
+- =+|||||+... +.+ +.+...+.. ...|..|||||+.. .+...+. ..-+++++..+.+...+
T Consensus 377 ~~-DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~--~GLvv~I~~PD~EtR~a 453 (617)
T PRK14086 377 EM-DILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFE--WGLITDVQPPELETRIA 453 (617)
T ss_pred cC-CEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhh--cCceEEcCCCCHHHHHH
Confidence 33 47888999643 222 222222211 12456788888753 1222222 55678999999999999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 153 HFCNFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 153 Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
++.+++-..... --.++++-|++.+.+.
T Consensus 454 IL~kka~~r~l~--l~~eVi~yLa~r~~rn 481 (617)
T PRK14086 454 ILRKKAVQEQLN--APPEVLEFIASRISRN 481 (617)
T ss_pred HHHHHHHhcCCC--CCHHHHHHHHHhccCC
Confidence 999887433221 1133444455554443
No 129
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=97.47 E-value=0.00081 Score=81.22 Aligned_cols=112 Identities=13% Similarity=-0.002 Sum_probs=64.1
Q ss_pred hHHHHHHhcCceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEE--EecchhH-HhhhccccccEEEecCCCHHHHHH
Q 001407 78 PHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVV--TTRDKRV-LEKFRGEEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 78 ~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIii--TTR~~~v-~~~~~~~~~~~~~v~~L~~~ea~~ 152 (1083)
...+.+.+.++++.++-|++|..+ .|+.+...+....+...|+| ||++... ...... ....+.+.+++.+|.++
T Consensus 282 Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~ 360 (615)
T TIGR02903 282 QNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIAL 360 (615)
T ss_pred HHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHH
Confidence 356666777778887766555432 35555554444445555555 6665432 222221 23467889999999999
Q ss_pred HHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhh
Q 001407 153 HFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSS 192 (1083)
Q Consensus 153 Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~ 192 (1083)
++.+.+-..... --.+..+.|.++...-+-|+..++..
T Consensus 361 Il~~~a~~~~v~--ls~eal~~L~~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 361 IVLNAAEKINVH--LAAGVEELIARYTIEGRKAVNILADV 398 (615)
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 999876432211 11334555666655445666655433
No 130
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.47 E-value=4.6e-06 Score=89.68 Aligned_cols=108 Identities=17% Similarity=0.234 Sum_probs=56.3
Q ss_pred cccCccEEEcCCCCCCCCcCccc-ccCCCCccEEEecCCCCCc---CchhccCCCCCcEEEeeCCCCc------ccchhh
Q 001407 631 LSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYAVRE---IPQEIAYLSSLEILYLSGNNFE------SLPAII 700 (1083)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~Ls~n~l~------~lp~~l 700 (1083)
+..+|+.|-+++|+..+...... ..+.+.|+.+++..+.... +-.--.+++.|+.|.|++|... .+...-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 45677777777777544433322 3455666777666665432 2222235666777777766432 112233
Q ss_pred hCCCCCCEeeccCcccCCCCC----CCCCCccEEeecCCCCC
Q 001407 701 KQMSQLRFIHLEDFNMLQSLP----ELPLCLKYLHLIDCKML 738 (1083)
Q Consensus 701 ~~l~~L~~L~L~~~~~l~~lp----~~~~~L~~L~l~~c~~l 738 (1083)
..+..|..+.|++|+.+..-. ...++|+.+++.+|...
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~v 439 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDV 439 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhh
Confidence 445566666666666544321 11234555555555443
No 131
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.44 E-value=0.0017 Score=72.56 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=69.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
..++.++|++|+||||+|+++++.....| .++... . .....+...+ ...... ....
T Consensus 43 ~~~lll~G~~G~GKT~la~~l~~~~~~~~---~~i~~~-~-----~~~~~i~~~l-~~~~~~--------------~~~~ 98 (316)
T PHA02544 43 PNMLLHSPSPGTGKTTVAKALCNEVGAEV---LFVNGS-D-----CRIDFVRNRL-TRFAST--------------VSLT 98 (316)
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhCccc---eEeccC-c-----ccHHHHHHHH-HHHHHh--------------hccc
Confidence 46777899999999999999998763322 233211 1 1122221111 111000 0011
Q ss_pred CceeEEEEeCCCCh---HHHHHHhhccCCCCCCcEEEEEecchhHH-hhhccccccEEEecCCCHHHHHHHHHH
Q 001407 87 RMKLLIVLDDVNEV---GQLKRLIGELDQFGQGSRIVVTTRDKRVL-EKFRGEEKKIYRVNGLEFEEAFEHFCN 156 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~---~~~~~l~~~~~~~~~gsrIiiTTR~~~v~-~~~~~~~~~~~~v~~L~~~ea~~Lf~~ 156 (1083)
+.+-+||+|+++.. +..+.+...+.....+.++|+||...... ..... ....+.++..+.++..+++..
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s-R~~~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS-RCRVIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-hceEEEeCCCCHHHHHHHHHH
Confidence 23457889999755 23334444344445678899998765322 22211 334677778888888777654
No 132
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=0.0017 Score=69.33 Aligned_cols=177 Identities=21% Similarity=0.265 Sum_probs=105.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
++=|.+||++|.|||-||++|+++....| +..++ .++.+..+.+ +..+++.+.+.-+
T Consensus 185 PKGVLLYGPPGTGKTLLAkAVA~~T~AtF-----Irvvg---------SElVqKYiGE---------GaRlVRelF~lAr 241 (406)
T COG1222 185 PKGVLLYGPPGTGKTLLAKAVANQTDATF-----IRVVG---------SELVQKYIGE---------GARLVRELFELAR 241 (406)
T ss_pred CCceEeeCCCCCcHHHHHHHHHhccCceE-----EEecc---------HHHHHHHhcc---------chHHHHHHHHHHh
Confidence 45688999999999999999999875544 33221 1233333221 2222333444444
Q ss_pred Cc-eeEEEEeCCCChH--------------H--HHHHhhccCCCCC--CcEEEEEecchhHHhhh---ccccccEEEecC
Q 001407 87 RM-KLLIVLDDVNEVG--------------Q--LKRLIGELDQFGQ--GSRIVVTTRDKRVLEKF---RGEEKKIYRVNG 144 (1083)
Q Consensus 87 ~k-r~LlVlDdv~~~~--------------~--~~~l~~~~~~~~~--gsrIiiTTR~~~v~~~~---~~~~~~~~~v~~ 144 (1083)
.| ...|.+|.++... | +-.|+..+.-|.+ .-|||..|.-.+++... .+..++.++++.
T Consensus 242 ekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfpl 321 (406)
T COG1222 242 EKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPL 321 (406)
T ss_pred hcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCC
Confidence 43 6788889774321 1 3345666665553 46888888766655432 134788999998
Q ss_pred CCHHHHHHHHHHhhcCCCC-CCchhHHHHHHHHHhhCCCch----hHHHHhhhhc--C-C---CHHHHHHHHHHHhh
Q 001407 145 LEFEEAFEHFCNFAFKENH-CPEDLNWHSRSVVSYTKGNPL----VLEVLGSSLC--L-K---RKSHWGKVLHDLNR 210 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~~~~-~~~~~~~l~~~i~~~~~glPL----al~~l~~~L~--~-~---~~~~w~~~l~~l~~ 210 (1083)
-+.+.-.++|.-|+-+-.. ..-+++ .+++.+.|.-- |+-+=|+.+. . + +.+++..+.++.-.
T Consensus 322 Pd~~gR~~Il~IHtrkM~l~~dvd~e----~la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 322 PDEEGRAEILKIHTRKMNLADDVDLE----LLARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred CCHHHHHHHHHHHhhhccCccCcCHH----HHHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 8888888999988754332 223443 45666666543 3444444442 2 1 45666666665443
No 133
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0017 Score=74.16 Aligned_cols=155 Identities=14% Similarity=0.255 Sum_probs=87.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc--------cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCch
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH--------EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP 78 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~ 78 (1083)
.+.+.++|+.|+||||+|+++.+.+.. .|...++-.+ . ... .++..+. ++..+....
T Consensus 39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~--~-~~~-~~~~~i~-~l~~~~~~~---------- 103 (367)
T PRK14970 39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD--A-ASN-NSVDDIR-NLIDQVRIP---------- 103 (367)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec--c-ccC-CCHHHHH-HHHHHHhhc----------
Confidence 468899999999999999999886543 1222222110 0 000 1122221 222111100
Q ss_pred HHHHHHhcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHH
Q 001407 79 HFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFC 155 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~ 155 (1083)
-..+++-+||+|+++.. ..++.+...+........+|++|.. ..+...... ....++.+++++++....+.
T Consensus 104 -----p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~s-r~~~v~~~~~~~~~l~~~l~ 177 (367)
T PRK14970 104 -----PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILS-RCQIFDFKRITIKDIKEHLA 177 (367)
T ss_pred -----cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHh-cceeEecCCccHHHHHHHHH
Confidence 01234457999998754 3466666555433345556655533 333332221 34578999999999998888
Q ss_pred HhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 156 NFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 156 ~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
..+-..+..- ..+.+..+++.++|.+-
T Consensus 178 ~~~~~~g~~i--~~~al~~l~~~~~gdlr 204 (367)
T PRK14970 178 GIAVKEGIKF--EDDALHIIAQKADGALR 204 (367)
T ss_pred HHHHHcCCCC--CHHHHHHHHHhCCCCHH
Confidence 8764433211 23557778888888664
No 134
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.41 E-value=0.0024 Score=76.15 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
+.-++|||+|+.. +..+.|+..+.......++|++|.+ ..+.....+ ....++++.++.++..+.+.+.+-..+..
T Consensus 124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ 202 (618)
T PRK14951 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVP 202 (618)
T ss_pred CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4457899999764 4577777766554455666655544 344433321 45789999999999999988776433322
Q ss_pred CchhHHHHHHHHHhhCCCch
Q 001407 165 PEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPL 184 (1083)
. ..+....|++.++|.+-
T Consensus 203 i--e~~AL~~La~~s~GslR 220 (618)
T PRK14951 203 A--EPQALRLLARAARGSMR 220 (618)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 23446778888888764
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.39 E-value=0.003 Score=74.72 Aligned_cols=103 Identities=12% Similarity=0.111 Sum_probs=66.5
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-+||+|+++.. +..+.|+..+........+|++|.+ ..+...... ....++++.++.++..+.+...+.....
T Consensus 118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi 196 (624)
T PRK14959 118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGV 196 (624)
T ss_pred CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999998765 4566777666543445666666655 444433321 3457899999999999998876644332
Q ss_pred CCchhHHHHHHHHHhhCCCc-hhHHHHhhh
Q 001407 164 CPEDLNWHSRSVVSYTKGNP-LVLEVLGSS 192 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glP-Lal~~l~~~ 192 (1083)
. -..+.++.|++.++|.+ .|+..+...
T Consensus 197 ~--id~eal~lIA~~s~GdlR~Al~lLeql 224 (624)
T PRK14959 197 D--YDPAAVRLIARRAAGSVRDSMSLLGQV 224 (624)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 1 12345778888898864 566666543
No 136
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=97.38 E-value=0.002 Score=75.73 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=60.5
Q ss_pred eeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCCC
Q 001407 89 KLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP 165 (1083)
Q Consensus 89 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~ 165 (1083)
+-++|+|+++.. +.++.|+..+....+...+|++|.. ..+...... ....+++.+++.++....+...+-..+..
T Consensus 120 ~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~S-Rcq~ieF~~Ls~~eL~~~L~~il~kegi~- 197 (605)
T PRK05896 120 YKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIIS-RCQRYNFKKLNNSELQELLKSIAKKEKIK- 197 (605)
T ss_pred cEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHh-hhhhcccCCCCHHHHHHHHHHHHHHcCCC-
Confidence 335999998763 4566777665544445666555543 344333221 35679999999999998888766433211
Q ss_pred chhHHHHHHHHHhhCCCch-hHHHH
Q 001407 166 EDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 166 ~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
-..+.+..+++.++|.+- |+..+
T Consensus 198 -Is~eal~~La~lS~GdlR~AlnlL 221 (605)
T PRK05896 198 -IEDNAIDKIADLADGSLRDGLSIL 221 (605)
T ss_pred -CCHHHHHHHHHHcCCcHHHHHHHH
Confidence 113446788888988653 44443
No 137
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.36 E-value=0.0029 Score=74.45 Aligned_cols=154 Identities=15% Similarity=0.153 Sum_probs=88.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhccc---------------------CceEEEEeeccccccccCCHHHHHHHHHHhh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHE---------------------FEGSCFVSDVRGNSETAGGLEHLQKQMLSTT 65 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~---------------------F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l 65 (1083)
...+.++|+.|+||||+|+.++..+-.. |...+.+... .. .++.++ ++++...
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaa----s~-~~v~~i-R~l~~~~ 111 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAA----SR-TKVEDT-RELLDNI 111 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEccc----cc-CCHHHH-HHHHHHH
Confidence 3457899999999999999999865321 1112222111 01 222222 1222211
Q ss_pred hccccccCCCCchHHHHHHhcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEe
Q 001407 66 LSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v 142 (1083)
... -..++.-++|+|+|+.. +..+.++..+....+..++|++|.+. .+.....+ ....+++
T Consensus 112 ~~~---------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~S-Rc~~~~f 175 (509)
T PRK14958 112 PYA---------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLS-RCLQFHL 175 (509)
T ss_pred hhc---------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHH-Hhhhhhc
Confidence 100 11244557889999764 45677776666555677777666554 33323211 3466889
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 143 NGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
+.++.++..+.+.+.+-..+... ..+....|++.++|-+-
T Consensus 176 ~~l~~~~i~~~l~~il~~egi~~--~~~al~~ia~~s~GslR 215 (509)
T PRK14958 176 AQLPPLQIAAHCQHLLKEENVEF--ENAALDLLARAANGSVR 215 (509)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHcCCcHH
Confidence 99999988877766553332211 12345678888888774
No 138
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.35 E-value=0.00024 Score=52.46 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=32.4
Q ss_pred CCCcEEEeeCCCCcccchhhhCCCCCCEeeccCcccC
Q 001407 681 SSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFNML 717 (1083)
Q Consensus 681 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~~~~l 717 (1083)
++|++|++++|+|+.+|..++++++|+.|++++|++.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 5799999999999999988999999999999999754
No 139
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=97.35 E-value=0.0034 Score=68.31 Aligned_cols=154 Identities=22% Similarity=0.258 Sum_probs=83.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccc-cccccCCHHHHHHHHHHhhhccccccCCCCchHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRG-NSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 83 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~-~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 83 (1083)
.-++.++|||++|.|||.+|++++.+....| +-+. ..+ .+.-...-++..++.+... .+
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~---i~vs-a~eL~sk~vGEsEk~IR~~F~~A----------------~~ 205 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEP---IVMS-AGELESENAGEPGKLIRQRYREA----------------AD 205 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCe---EEEE-HHHhhcCcCCcHHHHHHHHHHHH----------------HH
Confidence 4578999999999999999999999875543 1221 111 1111122233444443321 11
Q ss_pred H--hcCceeEEEEeCCCCh------------HHH--HHHhhccC----------C----CCCCcEEEEEecchhHHhhh-
Q 001407 84 R--VRRMKLLIVLDDVNEV------------GQL--KRLIGELD----------Q----FGQGSRIVVTTRDKRVLEKF- 132 (1083)
Q Consensus 84 ~--l~~kr~LlVlDdv~~~------------~~~--~~l~~~~~----------~----~~~gsrIiiTTR~~~v~~~~- 132 (1083)
. -+++.+.|++|+++.. .+. ..|+.... | ..++-.||+||.+.+.....
T Consensus 206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL 285 (413)
T PLN00020 206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL 285 (413)
T ss_pred HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence 1 1457889999987521 111 23332211 1 23566788899777643322
Q ss_pred c--cccccEEEecCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCch
Q 001407 133 R--GEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 133 ~--~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPL 184 (1083)
. +..+..| ..-+.++-.++++.+. +....+ ..-..++++...|-|+
T Consensus 286 lRpGRfDk~i--~lPd~e~R~eIL~~~~-r~~~l~---~~dv~~Lv~~f~gq~~ 333 (413)
T PLN00020 286 IRDGRMEKFY--WAPTREDRIGVVHGIF-RDDGVS---REDVVKLVDTFPGQPL 333 (413)
T ss_pred cCCCCCCcee--CCCCHHHHHHHHHHHh-ccCCCC---HHHHHHHHHcCCCCCc
Confidence 1 1233444 3456777778877654 333222 1224556666666554
No 140
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.33 E-value=1.5e-05 Score=85.79 Aligned_cols=218 Identities=18% Similarity=0.184 Sum_probs=99.5
Q ss_pred ccCeeccCCCCCC---CCCcccCCCCCCcEEeccCCCCCccCC--CCcCCCchhhhhhcccc-cccCC--CchhhcccCc
Q 001407 564 HLKRIYSDRTPIT---ELPSSFENLPGLEVLFVEDCSKLDNLP--DNIGSLEYLYYILAAAS-AISQL--PSSVALSNML 635 (1083)
Q Consensus 564 ~L~~L~l~~~~l~---~lp~~~~~l~~L~~L~l~~~~~~~~~p--~~l~~l~~L~~L~l~~~-~i~~l--p~~~~~l~~L 635 (1083)
.|+.|.+.|+.-. .+-....++++++.|.+.+|..+.... ..-..+++|++|++..| .++.. -.....+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 3566666664322 222224456677777777766432211 11124556666666653 23321 1122346666
Q ss_pred cEEEcCCCCCCCCcCc-ccccCCCCccEEEecCCCCCcC---chhccCCCCCcEEEeeCCC-Ccccc--hhhhCCCCCCE
Q 001407 636 RSLDSSHCKGLESFPR-TFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGNN-FESLP--AIIKQMSQLRF 708 (1083)
Q Consensus 636 ~~L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~l---p~~l~~l~~L~~L~Ls~n~-l~~lp--~~l~~l~~L~~ 708 (1083)
++|++++|.....-.. ....+...++.+.+.+|.-.++ -..-....-+.++++..|+ ++... ..-..+..|+.
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~ 298 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV 298 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence 6777766654332111 1133444455555555432221 1111233445555555543 22111 11234556666
Q ss_pred eeccCcccCCCCC-----CCCCCccEEeecCCCCCCcCC-----CCCCCCcEEeecCCCCCccC-----CCCCCCccEEe
Q 001407 709 IHLEDFNMLQSLP-----ELPLCLKYLHLIDCKMLQSLP-----VLPFCLESLDLTGCNMLRSL-----PELPLCLQYLN 773 (1083)
Q Consensus 709 L~L~~~~~l~~lp-----~~~~~L~~L~l~~c~~l~~l~-----~~~~~L~~L~Ls~n~~~~~~-----~~~~~~L~~L~ 773 (1083)
|+.++|...+..+ ...++|+.|.++.|..+.... ...+.|+.+++.+|.....- ....+.|+.|.
T Consensus 299 l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls 378 (483)
T KOG4341|consen 299 LCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS 378 (483)
T ss_pred hcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence 6666665544322 334566666666666543322 12223555555555443211 11223355555
Q ss_pred ccCCCCCC
Q 001407 774 LEDCNMLR 781 (1083)
Q Consensus 774 ls~n~~l~ 781 (1083)
+++|....
T Consensus 379 lshce~it 386 (483)
T KOG4341|consen 379 LSHCELIT 386 (483)
T ss_pred hhhhhhhh
Confidence 55554443
No 141
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.31 E-value=0.0025 Score=75.57 Aligned_cols=100 Identities=11% Similarity=0.115 Sum_probs=63.1
Q ss_pred CceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++... ..+.|+..+........+|++|.+. .+.....+ ....++++.++.++..+.+.+.+-.++.
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~S-Rc~~~~f~~l~~~~i~~~L~~il~~egi 196 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLS-RCLQFNLKQMPPPLIVSHLQHILEQENI 196 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHH-HHHHHhcCCCCHHHHHHHHHHHHHHcCC
Confidence 456689999998653 4667777666544566666666544 33322211 3467899999999998888776533322
Q ss_pred CCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
. ...+....+++.++|.+- |+..+
T Consensus 197 ~--~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 197 P--FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123446778889999774 44443
No 142
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=97.31 E-value=0.0039 Score=70.01 Aligned_cols=176 Identities=14% Similarity=0.194 Sum_probs=104.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCce--EEEEeeccccccccCCHHHHHHHHHHhhhc-cccccCCCCchHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEG--SCFVSDVRGNSETAGGLEHLQKQMLSTTLS-EKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~-~~~~~~~~~~~~~~~~~l 85 (1083)
-+.|+|.+|+|||+.++.++.++...... ++++.+..- ....++..+++..+.. ........+....+.+.+
T Consensus 44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~-----~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~ 118 (366)
T COG1474 44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLEL-----RTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNL 118 (366)
T ss_pred cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeC-----CCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHH
Confidence 38999999999999999999987655332 466653222 4556777788777642 222233333445666665
Q ss_pred c--CceeEEEEeCCCChHHH--HHHhhccCCCCC-CcEE--EEEecchhHHhhhcc-----ccccEEEecCCCHHHHHHH
Q 001407 86 R--RMKLLIVLDDVNEVGQL--KRLIGELDQFGQ-GSRI--VVTTRDKRVLEKFRG-----EEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 86 ~--~kr~LlVlDdv~~~~~~--~~l~~~~~~~~~-gsrI--iiTTR~~~v~~~~~~-----~~~~~~~v~~L~~~ea~~L 153 (1083)
. ++.++||||+++....- +.+..-+.+... .++| |..+-+..+...+.. -....+..++-+.+|-.+.
T Consensus 119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~I 198 (366)
T COG1474 119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDI 198 (366)
T ss_pred HhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHH
Confidence 4 46899999998654321 222222222222 3443 334444443333221 1223366788888888888
Q ss_pred HHHhh---cCCCCCCchhHHHHHHHHHhhCCC-chhHHHH
Q 001407 154 FCNFA---FKENHCPEDLNWHSRSVVSYTKGN-PLVLEVL 189 (1083)
Q Consensus 154 f~~~a---~~~~~~~~~~~~l~~~i~~~~~gl-PLal~~l 189 (1083)
+..++ |......++..+++..++..-+|- -.|+.++
T Consensus 199 l~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 199 LRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred HHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 88765 444555566666667777777763 3444443
No 143
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.28 E-value=0.0046 Score=74.00 Aligned_cols=94 Identities=7% Similarity=0.081 Sum_probs=59.7
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
.+-++|+|+++.. +..+.|+..+....+.+.+|++| +...+...... ....++.+.++.++....+.+.+-.....
T Consensus 127 ~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi~ 205 (620)
T PRK14954 127 RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGIQ 205 (620)
T ss_pred CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCCC
Confidence 4557899998765 34667777665544556655555 44444443321 45789999999999888887765332211
Q ss_pred CchhHHHHHHHHHhhCCCch
Q 001407 165 PEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPL 184 (1083)
-..+.++.+++.++|..-
T Consensus 206 --I~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 206 --IDADALQLIARKAQGSMR 223 (620)
T ss_pred --CCHHHHHHHHHHhCCCHH
Confidence 123457788999998653
No 144
>PRK08181 transposase; Validated
Probab=97.28 E-value=0.00089 Score=71.60 Aligned_cols=36 Identities=25% Similarity=0.109 Sum_probs=29.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.+-|.++|++|+|||.||.++.+....+...+.|+.
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~ 141 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR 141 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee
Confidence 345899999999999999999997766555566664
No 145
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.26 E-value=7.4e-05 Score=90.43 Aligned_cols=105 Identities=21% Similarity=0.166 Sum_probs=48.7
Q ss_pred CCchhhhhhcccccccCCCchhhcccCccEEEcCCCCCCCCcCcccccCCCCccEEEecCCCCCcCc-------hhccCC
Q 001407 608 SLEYLYYILAAASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREIP-------QEIAYL 680 (1083)
Q Consensus 608 ~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-------~~l~~l 680 (1083)
++++|..||+++++++.+ .+++.+++|+.|.+.+-.+........+..+.+|+.||+|.......+ +.-..+
T Consensus 171 sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L 249 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL 249 (699)
T ss_pred ccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence 444444445555544444 444444555555444433322222222334445555555443322211 112347
Q ss_pred CCCcEEEeeCCCCc--ccchhhhCCCCCCEeeccC
Q 001407 681 SSLEILYLSGNNFE--SLPAIIKQMSQLRFIHLED 713 (1083)
Q Consensus 681 ~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~L~~ 713 (1083)
|.|+.||.|++.+. .+...+...++|+.+.+-+
T Consensus 250 peLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~ 284 (699)
T KOG3665|consen 250 PELRFLDCSGTDINEEILEELLNSHPNLQQIAALD 284 (699)
T ss_pred ccccEEecCCcchhHHHHHHHHHhCccHhhhhhhh
Confidence 77888887777665 2223334455555554433
No 146
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.26 E-value=0.003 Score=72.18 Aligned_cols=120 Identities=24% Similarity=0.251 Sum_probs=79.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcCc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRM 88 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~k 88 (1083)
++.|.|+=++||||+++.+.....+. .+++......... ..+.+.. ....+.-..+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~-~~l~d~~--------------------~~~~~~~~~~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDR-IELLDLL--------------------RAYIELKERE 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcch-hhHHHHH--------------------HHHHHhhccC
Confidence 99999999999999997776665454 5555422111111 1111111 1111111127
Q ss_pred eeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHh-----hhccccccEEEecCCCHHHHHHHH
Q 001407 89 KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLE-----KFRGEEKKIYRVNGLEFEEAFEHF 154 (1083)
Q Consensus 89 r~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-----~~~~~~~~~~~v~~L~~~ea~~Lf 154 (1083)
+.+|+||.|.....|+..+..+...++. +|+||+-...+.. ...+ ....+++.+|+..|-..+-
T Consensus 95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~G-R~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAG-RGKDLELYPLSFREFLKLK 163 (398)
T ss_pred CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCC-CceeEEECCCCHHHHHhhc
Confidence 7899999999999999988888777766 8999988775433 2222 4667899999999876653
No 147
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.24 E-value=0.0044 Score=74.85 Aligned_cols=169 Identities=13% Similarity=0.117 Sum_probs=92.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCC-----CCchHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG-----PNIPHFT 81 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~-----~~~~~~~ 81 (1083)
...+.++|+.|+||||+|+.++..+.......-+ ...+.-...+.+...........+. .+..+.+
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~---------~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~i 108 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKG---------RPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREI 108 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC---------CCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHH
Confidence 3567899999999999999999866321100000 0011112222222211110000000 0001112
Q ss_pred HHHh-----cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHH
Q 001407 82 KERV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 82 ~~~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
.+.+ .+++-++|+|+++.. +..+.|+..+....+...+|++|.+. .+...... ....++++.++.++..+.
T Consensus 109 i~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~S-R~~~i~f~~l~~~el~~~ 187 (585)
T PRK14950 109 IERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILS-RCQRFDFHRHSVADMAAH 187 (585)
T ss_pred HHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHh-ccceeeCCCCCHHHHHHH
Confidence 2211 234568999998754 45777776665545566777666543 33333221 345788999999999888
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHH
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLE 187 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~ 187 (1083)
+.+.+...+.. -..+.+..+++.++|.+..+.
T Consensus 188 L~~~a~~egl~--i~~eal~~La~~s~Gdlr~al 219 (585)
T PRK14950 188 LRKIAAAEGIN--LEPGALEAIARAATGSMRDAE 219 (585)
T ss_pred HHHHHHHcCCC--CCHHHHHHHHHHcCCCHHHHH
Confidence 88776443321 123457788999999885443
No 148
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.23 E-value=0.00068 Score=65.51 Aligned_cols=35 Identities=31% Similarity=0.463 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
+.+.|+|++|+||||+|+.++.........++++.
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~ 37 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYID 37 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence 57899999999999999999997766543455553
No 149
>CHL00176 ftsH cell division protein; Validated
Probab=97.23 E-value=0.0042 Score=74.82 Aligned_cols=151 Identities=21% Similarity=0.271 Sum_probs=85.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+-|.++|++|+|||++|++++...... |+. + ....+....... ........+.+...
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~-i--------s~s~f~~~~~g~--------~~~~vr~lF~~A~~ 273 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS-I--------SGSEFVEMFVGV--------GAARVRDLFKKAKE 273 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee-c--------cHHHHHHHhhhh--------hHHHHHHHHHHHhc
Confidence 4568999999999999999999865322 221 1 001111111000 00011133444445
Q ss_pred CceeEEEEeCCCChH----------------HHHHHhhccCCC--CCCcEEEEEecchhHHhhh-c--cccccEEEecCC
Q 001407 87 RMKLLIVLDDVNEVG----------------QLKRLIGELDQF--GQGSRIVVTTRDKRVLEKF-R--GEEKKIYRVNGL 145 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~-~--~~~~~~~~v~~L 145 (1083)
..+.+|++|+++... .+..++..+..+ ..+-.||.||...+..... . +..+..+.++..
T Consensus 274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP 353 (638)
T CHL00176 274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP 353 (638)
T ss_pred CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence 668899999996431 133444333322 2455677777665443321 1 125678899999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 146 EFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
+.++..++++.++-..... .......+++.+.|.
T Consensus 354 d~~~R~~IL~~~l~~~~~~---~d~~l~~lA~~t~G~ 387 (638)
T CHL00176 354 DREGRLDILKVHARNKKLS---PDVSLELIARRTPGF 387 (638)
T ss_pred CHHHHHHHHHHHHhhcccc---hhHHHHHHHhcCCCC
Confidence 9999999999887442211 112245677777763
No 150
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.22 E-value=2.8e-05 Score=70.82 Aligned_cols=112 Identities=21% Similarity=0.285 Sum_probs=78.3
Q ss_pred CCCcEEEeeCCCCcccccccc---cCCCCCcEEeccCCcCcccCchhhh-hccccCeeccCCCCCCCCCcccCCCCCCcE
Q 001407 515 TDLEVLDLRGCKRLKRISTSF---CKLRSLVTLILLGCLNLEHFPEILE-KMEHLKRIYSDRTPITELPSSFENLPGLEV 590 (1083)
Q Consensus 515 ~~L~~L~L~~~~~~~~lp~~l---~~l~~L~~L~L~~~~~~~~~p~~l~-~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~ 590 (1083)
..+..++|++|. +..+++.. .....|...+|++|.+ ..+|..|. ..+.++.|++++|.+.++|..+..++.|+.
T Consensus 27 kE~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~ 104 (177)
T KOG4579|consen 27 KELHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS 104 (177)
T ss_pred HHhhhcccccch-hhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence 345667788876 44444433 3445566667887654 44555444 455788888888888888888888888888
Q ss_pred EeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchh
Q 001407 591 LFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSV 629 (1083)
Q Consensus 591 L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~ 629 (1083)
|+++.|++.. .|..+..+.+|..|+..+|.+.++|-.+
T Consensus 105 lNl~~N~l~~-~p~vi~~L~~l~~Lds~~na~~eid~dl 142 (177)
T KOG4579|consen 105 LNLRFNPLNA-EPRVIAPLIKLDMLDSPENARAEIDVDL 142 (177)
T ss_pred cccccCcccc-chHHHHHHHhHHHhcCCCCccccCcHHH
Confidence 8888887543 4555666888888888888888777653
No 151
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.22 E-value=0.0045 Score=74.43 Aligned_cols=100 Identities=12% Similarity=0.144 Sum_probs=62.8
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEE-EecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVV-TTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIii-TTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +.+..|+..+....+...+|+ ||+...+...... ....+++.+++.++..+.+...+-..+.
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~S-Rcq~ieF~~L~~eeI~~~L~~il~kegI 195 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILS-RVQRFNFRRISEDEIVSRLEFILEKENI 195 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHh-hceeEEccCCCHHHHHHHHHHHHHHcCC
Confidence 45568899998754 457777776655444555554 4444455443321 3468999999999999888876533221
Q ss_pred CCchhHHHHHHHHHhhCCCch-hHHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL-al~~l 189 (1083)
. -..+.++.+++.++|-+- |+..+
T Consensus 196 ~--id~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 196 S--YEKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 1 123346788899988664 44443
No 152
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.20 E-value=0.0044 Score=69.14 Aligned_cols=133 Identities=25% Similarity=0.220 Sum_probs=81.8
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHH
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKE 83 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~ 83 (1083)
......|.+.|++|.|||+||.+++.. ..|+.+--+. .++.-++.+-.+... +...+..
T Consensus 535 ~s~lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS-----pe~miG~sEsaKc~~--------------i~k~F~D 593 (744)
T KOG0741|consen 535 RSPLVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS-----PEDMIGLSESAKCAH--------------IKKIFED 593 (744)
T ss_pred cCcceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC-----hHHccCccHHHHHHH--------------HHHHHHH
Confidence 345678899999999999999999864 6777655543 111122222221111 1134444
Q ss_pred HhcCceeEEEEeCCCChHH------------HHHHhhcc---CCCCCCcEEEEEecchhHHhhhcc--ccccEEEecCCC
Q 001407 84 RVRRMKLLIVLDDVNEVGQ------------LKRLIGEL---DQFGQGSRIVVTTRDKRVLEKFRG--EEKKIYRVNGLE 146 (1083)
Q Consensus 84 ~l~~kr~LlVlDdv~~~~~------------~~~l~~~~---~~~~~gsrIiiTTR~~~v~~~~~~--~~~~~~~v~~L~ 146 (1083)
..+..--.||+||+...-+ +++|+..+ |..+..--|+-||..+.+.+.|+. .....|.|+.++
T Consensus 594 AYkS~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~ 673 (744)
T KOG0741|consen 594 AYKSPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLT 673 (744)
T ss_pred hhcCcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccC
Confidence 4555667899999865443 23333333 222333446668888899988862 245678999998
Q ss_pred H-HHHHHHHHHh
Q 001407 147 F-EEAFEHFCNF 157 (1083)
Q Consensus 147 ~-~ea~~Lf~~~ 157 (1083)
. ++..+.+...
T Consensus 674 ~~~~~~~vl~~~ 685 (744)
T KOG0741|consen 674 TGEQLLEVLEEL 685 (744)
T ss_pred chHHHHHHHHHc
Confidence 7 6777776654
No 153
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=97.19 E-value=0.0014 Score=69.41 Aligned_cols=92 Identities=18% Similarity=0.289 Sum_probs=58.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccccc-cCC-CC--------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLE-VAG-PN-------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~~~-~~-------- 76 (1083)
+-++|.|.+|+||||||+.++++++.+|+..+++..+++... .+.++.+.+... ......- ... .+
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer~~---Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~ 146 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGERTR---EGNDLYHEMKESGVLSKTALVYGQMNEPPGARARV 146 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcH---HHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 568999999999999999999998888888888877765543 345555555443 1111100 000 00
Q ss_pred --chHHHHHHh---cCceeEEEEeCCCChHH
Q 001407 77 --IPHFTKERV---RRMKLLIVLDDVNEVGQ 102 (1083)
Q Consensus 77 --~~~~~~~~l---~~kr~LlVlDdv~~~~~ 102 (1083)
..-.+.+++ +++.+|+|+||+....+
T Consensus 147 ~~~a~~~AEyfr~~~g~~Vl~~~Dsltr~a~ 177 (274)
T cd01133 147 ALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQ 177 (274)
T ss_pred HHHHHHHHHHHHHhcCCeEEEEEeChhHHHH
Confidence 112233333 37899999999865543
No 154
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.18 E-value=0.00075 Score=67.79 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=27.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
+.+-+.++|..|+|||.||.++.+....+-..+.|+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 3456899999999999999999997665545566664
No 155
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.18 E-value=0.0053 Score=71.38 Aligned_cols=99 Identities=10% Similarity=0.126 Sum_probs=62.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+.+-++|+|+++.. +..+.|...+........+|++|.+ ..+...... ....++++.+++++..+.+.+.+-+.+.
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~ 198 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGI 198 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCC
Confidence 45667899998754 3456666666554456667666643 333333221 3467899999999998888876533221
Q ss_pred CCchhHHHHHHHHHhhCCCch-hHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL-VLEV 188 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL-al~~ 188 (1083)
. -..+.++.++++++|.+- |+..
T Consensus 199 ~--i~~~al~~L~~~s~gdlr~a~~~ 222 (451)
T PRK06305 199 E--TSREALLPIARAAQGSLRDAESL 222 (451)
T ss_pred C--CCHHHHHHHHHHcCCCHHHHHHH
Confidence 1 123457789999998663 4433
No 156
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.18 E-value=0.0082 Score=71.36 Aligned_cols=101 Identities=16% Similarity=0.162 Sum_probs=64.3
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEec-chhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +..+.|+..+........+|++|. ...+.....+ ....++.+.++.++..+.+.+.+-....
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~S-Rc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRS-RTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHH-hceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 34558899998643 457777777765555666665554 4444444322 3577999999999998888876643332
Q ss_pred CCchhHHHHHHHHHhhCCCch-hHHHHh
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL-VLEVLG 190 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL-al~~l~ 190 (1083)
.- ..+.+..|++.++|-+- |+..+-
T Consensus 196 ~i--~~~al~~Ia~~s~GdlR~aln~Ld 221 (584)
T PRK14952 196 VV--DDAVYPLVIRAGGGSPRDTLSVLD 221 (584)
T ss_pred CC--CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 11 13345778888888763 444443
No 157
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.17 E-value=0.0059 Score=71.45 Aligned_cols=95 Identities=12% Similarity=0.145 Sum_probs=63.8
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +..+.|+..+....+.+++|++|.+. .+...... ....+++++++.++..+.+.+.+-..+.
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi 194 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILS-RTQHFRFKQIPQNSIISHLKTILEKEGV 194 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 34568899998754 44677777766555677777777664 23222222 3567999999999999988776643332
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
.. ..+.++.+++.++|.+-
T Consensus 195 ~i--~~~Al~~Ia~~s~GdlR 213 (535)
T PRK08451 195 SY--EPEALEILARSGNGSLR 213 (535)
T ss_pred CC--CHHHHHHHHHHcCCcHH
Confidence 11 23457789999999874
No 158
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.17 E-value=0.0077 Score=70.49 Aligned_cols=96 Identities=8% Similarity=0.028 Sum_probs=60.4
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEec-chhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +..+.|...+....+...+|++|. ...+...... ....+++.+++.++..+.+.+.+-....
T Consensus 118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~S-Rc~~i~f~~ls~~el~~~L~~i~k~egi 196 (486)
T PRK14953 118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILS-RCQRFIFSKPTKEQIKEYLKRICNEEKI 196 (486)
T ss_pred CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHH-hceEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 45668999998754 446677666655445566665553 3334333221 3457899999999998888876643322
Q ss_pred CCchhHHHHHHHHHhhCCCchh
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLa 185 (1083)
. -..+.+..+++.++|.+..
T Consensus 197 ~--id~~al~~La~~s~G~lr~ 216 (486)
T PRK14953 197 E--YEEKALDLLAQASEGGMRD 216 (486)
T ss_pred C--CCHHHHHHHHHHcCCCHHH
Confidence 1 1234467788888887643
No 159
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.14 E-value=0.0035 Score=65.67 Aligned_cols=169 Identities=14% Similarity=0.202 Sum_probs=97.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc--ccCceEEEEeeccccccccCCHHHHHHHH--HHhhhccccccCCCCchHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFS--HEFEGSCFVSDVRGNSETAGGLEHLQKQM--LSTTLSEKLEVAGPNIPHF 80 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~~~~~~~~~~~~l~~l~~~l--l~~l~~~~~~~~~~~~~~~ 80 (1083)
........+|++|.|||+-|++++.++- +-|..++-=.+++. . .|..-....+ +..+........+
T Consensus 55 ~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSd---e-rGisvvr~Kik~fakl~~~~~~~~~------ 124 (346)
T KOG0989|consen 55 RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASD---E-RGISVVREKIKNFAKLTVLLKRSDG------ 124 (346)
T ss_pred cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccc---c-ccccchhhhhcCHHHHhhccccccC------
Confidence 3466788999999999999999998653 34555544333222 1 2222111111 0001000000000
Q ss_pred HHHHhcCce-eEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHH
Q 001407 81 TKERVRRMK-LLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCN 156 (1083)
Q Consensus 81 ~~~~l~~kr-~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~ 156 (1083)
. .-+. -.||||+++.. +.|.++......+...+|.|..|..-+ +..... ....-|.-++|.+++..+-+..
T Consensus 125 ---~-~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~-SRC~KfrFk~L~d~~iv~rL~~ 199 (346)
T KOG0989|consen 125 ---Y-PCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV-SRCQKFRFKKLKDEDIVDRLEK 199 (346)
T ss_pred ---C-CCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH-hhHHHhcCCCcchHHHHHHHHH
Confidence 0 0112 36889999875 458888888877676777555554443 322221 1344588899999999988888
Q ss_pred hhcCCCCCCchhHHHHHHHHHhhCCC-chhHHHHh
Q 001407 157 FAFKENHCPEDLNWHSRSVVSYTKGN-PLVLEVLG 190 (1083)
Q Consensus 157 ~a~~~~~~~~~~~~l~~~i~~~~~gl-PLal~~l~ 190 (1083)
.+-.++..- ..+..+.|++.++|- --|+.++-
T Consensus 200 Ia~~E~v~~--d~~al~~I~~~S~GdLR~Ait~Lq 232 (346)
T KOG0989|consen 200 IASKEGVDI--DDDALKLIAKISDGDLRRAITTLQ 232 (346)
T ss_pred HHHHhCCCC--CHHHHHHHHHHcCCcHHHHHHHHH
Confidence 885554432 234567888888884 34554443
No 160
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.13 E-value=0.00018 Score=73.13 Aligned_cols=86 Identities=16% Similarity=0.201 Sum_probs=46.0
Q ss_pred ccCCCCCcEEEeeCCCCcccc----cccccCCCCCcEEeccCCcCccc----Cc-------hhhhhccccCeeccCCCCC
Q 001407 511 IECLTDLEVLDLRGCKRLKRI----STSFCKLRSLVTLILLGCLNLEH----FP-------EILEKMEHLKRIYSDRTPI 575 (1083)
Q Consensus 511 i~~l~~L~~L~L~~~~~~~~l----p~~l~~l~~L~~L~L~~~~~~~~----~p-------~~l~~l~~L~~L~l~~~~l 575 (1083)
+..+..+..++||+|.+...- ...+.+-.+|+..+++.- .++. +| ..+-++++|+..+++.|.+
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf 104 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF 104 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence 344777888888888765443 333455667777777652 2221 22 2233455555566655555
Q ss_pred C-CCCc----ccCCCCCCcEEeccCCC
Q 001407 576 T-ELPS----SFENLPGLEVLFVEDCS 597 (1083)
Q Consensus 576 ~-~lp~----~~~~l~~L~~L~l~~~~ 597 (1083)
. ..|. .+.+-+.|.+|.+++|.
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnG 131 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNG 131 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCC
Confidence 4 2232 13444455555555544
No 161
>PRK09183 transposase/IS protein; Provisional
Probab=97.12 E-value=0.0018 Score=69.51 Aligned_cols=35 Identities=26% Similarity=0.194 Sum_probs=26.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
-..|.|+|++|+|||+||.+++.....+-..+.|+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~ 136 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT 136 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 34688999999999999999988654443344454
No 162
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.12 E-value=8.8e-05 Score=89.81 Aligned_cols=57 Identities=26% Similarity=0.392 Sum_probs=28.7
Q ss_pred CCCCcEEeccCCcCc-ccCchhhhhccccCeeccCCCCCCCCCcccCCCCCCcEEeccC
Q 001407 538 LRSLVTLILLGCLNL-EHFPEILEKMEHLKRIYSDRTPITELPSSFENLPGLEVLFVED 595 (1083)
Q Consensus 538 l~~L~~L~L~~~~~~-~~~p~~l~~l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~ 595 (1083)
+|+|+.|.+++-... +.+.....++++|..|++++++++.+ .++++|++|+.|.+.+
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRN 204 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccC
Confidence 555555555553221 12333344555555555555555555 3455555555555544
No 163
>PRK06526 transposase; Provisional
Probab=97.11 E-value=0.00068 Score=72.13 Aligned_cols=34 Identities=26% Similarity=0.159 Sum_probs=26.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEE
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCF 40 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 40 (1083)
.+-|.|+|++|+|||+||.++......+-..+.|
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f 131 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF 131 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence 4568999999999999999999876544333444
No 164
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.07 E-value=0.011 Score=73.31 Aligned_cols=95 Identities=12% Similarity=0.082 Sum_probs=60.8
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|||+++.. +..+.|+..+......+.+|++|.+. .+...... ....|++..++.++-.+++.+..-.++.
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv 197 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGV 197 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 44557889998754 44667777666555566666655443 45444322 4578999999999988888775432221
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
. -..+....|++.++|.+.
T Consensus 198 ~--id~eal~lLa~~sgGdlR 216 (824)
T PRK07764 198 P--VEPGVLPLVIRAGGGSVR 216 (824)
T ss_pred C--CCHHHHHHHHHHcCCCHH
Confidence 1 123345678888888773
No 165
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.07 E-value=0.00079 Score=65.98 Aligned_cols=102 Identities=20% Similarity=0.197 Sum_probs=50.5
Q ss_pred CCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCchhhc-ccCccEEEcCCCCCCCCcCcccccCCCCccEEEe
Q 001407 587 GLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVAL-SNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHI 665 (1083)
Q Consensus 587 ~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 665 (1083)
+...+++++|.+... ..|..++.|.+|.+++|.|+.+.+.+.. +++|+.|.+.+|++..--...
T Consensus 43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~------------- 107 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLD------------- 107 (233)
T ss_pred ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcc-------------
Confidence 444555555543221 2244555566666666666655444432 344555555554432211111
Q ss_pred cCCCCCcCchhccCCCCCcEEEeeCCCCcccc----hhhhCCCCCCEeeccC
Q 001407 666 SDYAVREIPQEIAYLSSLEILYLSGNNFESLP----AIIKQMSQLRFIHLED 713 (1083)
Q Consensus 666 ~~~~l~~lp~~l~~l~~L~~L~Ls~n~l~~lp----~~l~~l~~L~~L~L~~ 713 (1083)
.+..+|.|++|.+-+|.++.-. -.+..+|+|+.||..+
T Consensus 108 ----------pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 108 ----------PLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ----------hhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence 2345566666666666655433 1245566677766654
No 166
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.06 E-value=0.0069 Score=71.96 Aligned_cols=151 Identities=23% Similarity=0.315 Sum_probs=81.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+-|.++|++|+|||++|++++......| +. + ....+....... ....+...+.....
T Consensus 88 ~~giLL~GppGtGKT~la~alA~~~~~~~-----~~-i--------~~~~~~~~~~g~--------~~~~l~~~f~~a~~ 145 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAKAVAGEAGVPF-----FS-I--------SGSDFVEMFVGV--------GASRVRDLFEQAKK 145 (495)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCe-----ee-c--------cHHHHHHHHhcc--------cHHHHHHHHHHHHh
Confidence 34588999999999999999998653322 11 0 111111111100 00001123333334
Q ss_pred CceeEEEEeCCCChH----------------HHHHHhhccCCC--CCCcEEEEEecchhHHhh-h--ccccccEEEecCC
Q 001407 87 RMKLLIVLDDVNEVG----------------QLKRLIGELDQF--GQGSRIVVTTRDKRVLEK-F--RGEEKKIYRVNGL 145 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~----------------~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~-~--~~~~~~~~~v~~L 145 (1083)
..+.+|++|+++... .+..++..+... ..+-.||.||...+.... . .+..+..++++..
T Consensus 146 ~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~P 225 (495)
T TIGR01241 146 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLP 225 (495)
T ss_pred cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCC
Confidence 456899999985421 122333333322 234456666665532221 1 1125678999999
Q ss_pred CHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 146 EFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
+.++..++|..+.-+..... + .....+++.+.|.
T Consensus 226 d~~~R~~il~~~l~~~~~~~-~--~~l~~la~~t~G~ 259 (495)
T TIGR01241 226 DIKGREEILKVHAKNKKLAP-D--VDLKAVARRTPGF 259 (495)
T ss_pred CHHHHHHHHHHHHhcCCCCc-c--hhHHHHHHhCCCC
Confidence 99999999988764332211 1 1134677777774
No 167
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=97.05 E-value=0.0062 Score=72.83 Aligned_cols=96 Identities=13% Similarity=0.113 Sum_probs=62.6
Q ss_pred ceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++... ..+.|+..+....+.+++|++| ....+...... ....++++.++.++..+.+.+.+-.+...
T Consensus 132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~ 210 (598)
T PRK09111 132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVE 210 (598)
T ss_pred CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 34578999986553 4667776665555667766555 43444433322 45679999999999999998876433221
Q ss_pred CchhHHHHHHHHHhhCCCchhH
Q 001407 165 PEDLNWHSRSVVSYTKGNPLVL 186 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPLal 186 (1083)
-..+.+..|++.++|.+.-+
T Consensus 211 --i~~eAl~lIa~~a~Gdlr~a 230 (598)
T PRK09111 211 --VEDEALALIARAAEGSVRDG 230 (598)
T ss_pred --CCHHHHHHHHHHcCCCHHHH
Confidence 12345778899999987533
No 168
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.04 E-value=0.013 Score=70.68 Aligned_cols=167 Identities=17% Similarity=0.149 Sum_probs=89.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC-ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCC--CCchHHHHH-
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG--PNIPHFTKE- 83 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~--~~~~~~~~~- 83 (1083)
.-+.++|+.|+||||+|+.++..+-... ..... ...+.-...+.+...........+. ....+.+++
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~---------~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IRei 109 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTP---------EPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIREL 109 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCC---------CCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHH
Confidence 5678999999999999999998754321 10000 0011112222222211100000000 000111111
Q ss_pred --Hh-----cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHH
Q 001407 84 --RV-----RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 84 --~l-----~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
.+ .+++-++|+|+++.. +..+.|+..+........+|++|.+. .+...... ....+++..++.++..+.
T Consensus 110 i~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrS-Rc~~~~f~~l~~~ei~~~ 188 (620)
T PRK14948 110 IERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIIS-RCQRFDFRRIPLEAMVQH 188 (620)
T ss_pred HHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHh-heeEEEecCCCHHHHHHH
Confidence 11 234568899999854 45777777666444455555555443 44433321 456688889999998888
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchhH
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVL 186 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal 186 (1083)
+.+.+-.....- ..+.+..+++.++|.+..+
T Consensus 189 L~~ia~kegi~i--s~~al~~La~~s~G~lr~A 219 (620)
T PRK14948 189 LSEIAEKESIEI--EPEALTLVAQRSQGGLRDA 219 (620)
T ss_pred HHHHHHHhCCCC--CHHHHHHHHHHcCCCHHHH
Confidence 877664322211 1244778899999987543
No 169
>PRK12377 putative replication protein; Provisional
Probab=97.04 E-value=0.0026 Score=67.23 Aligned_cols=36 Identities=25% Similarity=0.196 Sum_probs=29.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
...+.++|.+|+|||+||.++++.+..+...++|+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~ 136 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT 136 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 357899999999999999999998876655566664
No 170
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.03 E-value=0.0037 Score=65.64 Aligned_cols=136 Identities=16% Similarity=0.278 Sum_probs=72.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh----cccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF----SHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTK 82 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~----~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 82 (1083)
-|+|.++|++|.|||+|.+++++++ .++|.....+.- .-..+-.+++++.+.-... +.+.++
T Consensus 177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEi---------nshsLFSKWFsESgKlV~k-----mF~kI~ 242 (423)
T KOG0744|consen 177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEI---------NSHSLFSKWFSESGKLVAK-----MFQKIQ 242 (423)
T ss_pred eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEE---------ehhHHHHHHHhhhhhHHHH-----HHHHHH
Confidence 4899999999999999999999964 355665555541 1223444444442221111 124555
Q ss_pred HHhcCce--eEEEEeCCCCh-----------------HHHHHHhhccCCCC--CCcEEEEEecch-hHHh-hhccccccE
Q 001407 83 ERVRRMK--LLIVLDDVNEV-----------------GQLKRLIGELDQFG--QGSRIVVTTRDK-RVLE-KFRGEEKKI 139 (1083)
Q Consensus 83 ~~l~~kr--~LlVlDdv~~~-----------------~~~~~l~~~~~~~~--~gsrIiiTTR~~-~v~~-~~~~~~~~~ 139 (1083)
+.+.++. +.+.+|.|... ..+.+++.+++..+ ++- +|.||.+- +-.. .+....+-.
T Consensus 243 ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv-liL~TSNl~~siD~AfVDRADi~ 321 (423)
T KOG0744|consen 243 ELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV-LILATSNLTDSIDVAFVDRADIV 321 (423)
T ss_pred HHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE-EEEeccchHHHHHHHhhhHhhhe
Confidence 5555554 45567988432 22455555554433 333 44455443 2111 111113344
Q ss_pred EEecCCCHHHHHHHHHHh
Q 001407 140 YRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 140 ~~v~~L~~~ea~~Lf~~~ 157 (1083)
.-|++-+.+.-.++++..
T Consensus 322 ~yVG~Pt~~ai~~Ilksc 339 (423)
T KOG0744|consen 322 FYVGPPTAEAIYEILKSC 339 (423)
T ss_pred eecCCccHHHHHHHHHHH
Confidence 556666665555555443
No 171
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.00 E-value=0.012 Score=64.65 Aligned_cols=91 Identities=10% Similarity=0.145 Sum_probs=61.7
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-.+|+|+++.. +....|+..+..-.++..+|++|.+. .+.....+ ....+.+.++++++..+.+..... .
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC~~~~~~~~~~~~~~~~L~~~~~-~-- 181 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RCQTWLIHPPEEQQALDWLQAQSS-A-- 181 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hceEEeCCCCCHHHHHHHHHHHhc-c--
Confidence 34557889998765 34666776666556677777777765 44444321 456899999999999999887641 1
Q ss_pred CCchhHHHHHHHHHhhCCCchh
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLa 185 (1083)
+ ...+...+..++|.|+.
T Consensus 182 --~--~~~~~~~~~l~~g~p~~ 199 (325)
T PRK06871 182 --E--ISEILTALRINYGRPLL 199 (325)
T ss_pred --C--hHHHHHHHHHcCCCHHH
Confidence 1 11256678899999963
No 172
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=96.96 E-value=0.003 Score=65.00 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=66.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
.+|.|.|+.|.||||++..+...+.......++...-.. . ..... ...+ ..+.....+.....+.++..++.
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~---E-~~~~~-~~~~---i~q~~vg~~~~~~~~~i~~aLr~ 73 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPI---E-FVHES-KRSL---INQREVGLDTLSFENALKAALRQ 73 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCc---c-ccccC-ccce---eeecccCCCccCHHHHHHHHhcC
Confidence 478999999999999999988876554444444321110 0 00000 0000 11111111122344667777777
Q ss_pred ceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhh
Q 001407 88 MKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 131 (1083)
Q Consensus 88 kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~ 131 (1083)
..=.+++|.+.+.+.++...... ..|-.++.|+....+...
T Consensus 74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~~~~~ 114 (198)
T cd01131 74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNSAAKT 114 (198)
T ss_pred CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCcHHHH
Confidence 77799999999888766655442 346667777776665543
No 173
>PRK06921 hypothetical protein; Provisional
Probab=96.95 E-value=0.0034 Score=67.49 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=30.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhccc-CceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 42 (1083)
...-+.++|..|+|||.||.++++.+..+ ...++|+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~ 153 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP 153 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence 35678999999999999999999987665 45566765
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.94 E-value=0.0049 Score=71.77 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=81.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCC-HHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGG-LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
.+-|.++|++|.|||.+|+++++.+.-.| +..+.........+ -....+ +.++..-
T Consensus 259 pkGILL~GPpGTGKTllAkaiA~e~~~~~----~~l~~~~l~~~~vGese~~l~-------------------~~f~~A~ 315 (489)
T CHL00195 259 PRGLLLVGIQGTGKSLTAKAIANDWQLPL----LRLDVGKLFGGIVGESESRMR-------------------QMIRIAE 315 (489)
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCE----EEEEhHHhcccccChHHHHHH-------------------HHHHHHH
Confidence 56689999999999999999999764332 11111100000000 001111 2222222
Q ss_pred cCceeEEEEeCCCChH--------------HHHHHhhccCCCCCCcEEEEEecchhHHh-hh--ccccccEEEecCCCHH
Q 001407 86 RRMKLLIVLDDVNEVG--------------QLKRLIGELDQFGQGSRIVVTTRDKRVLE-KF--RGEEKKIYRVNGLEFE 148 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~--------------~~~~l~~~~~~~~~gsrIiiTTR~~~v~~-~~--~~~~~~~~~v~~L~~~ 148 (1083)
...+++|++|+++..- .+..+...+.....+--||.||.+.+... .+ .+..+..+.++..+.+
T Consensus 316 ~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 316 ALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 3467899999886321 01222222222233445666776554322 11 1236778999999999
Q ss_pred HHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCc
Q 001407 149 EAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 149 ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glP 183 (1083)
+..++|..+..+....... ......+++.+.|.-
T Consensus 396 eR~~Il~~~l~~~~~~~~~-~~dl~~La~~T~GfS 429 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWK-KYDIKKLSKLSNKFS 429 (489)
T ss_pred HHHHHHHHHHhhcCCCccc-ccCHHHHHhhcCCCC
Confidence 9999999887443211100 111345666666654
No 175
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.93 E-value=0.0019 Score=62.28 Aligned_cols=22 Identities=41% Similarity=0.490 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
|.|+|.+|+|||+||+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999999987
No 176
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.92 E-value=0.00096 Score=68.05 Aligned_cols=32 Identities=28% Similarity=0.459 Sum_probs=22.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.....+.+.|+|.+|+|||+|+++++.++...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 34567999999999999999999999987766
No 177
>PRK10536 hypothetical protein; Provisional
Probab=96.91 E-value=0.0042 Score=64.84 Aligned_cols=117 Identities=15% Similarity=0.244 Sum_probs=60.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH-h-cccCceEEEEeeccccccc----cCCHHH----HHHHHHHhhhc----cccc-c
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ-F-SHEFEGSCFVSDVRGNSET----AGGLEH----LQKQMLSTTLS----EKLE-V 72 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~-~-~~~F~~~~~~~~~~~~~~~----~~~l~~----l~~~ll~~l~~----~~~~-~ 72 (1083)
.+|.+.|.+|.|||+||.+++.+ + .+.|...+.....-+..+. +.++.+ ...-+...+.. .... .
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~~ 154 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQYC 154 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 58999999999999999999884 3 4455544443221111110 011211 11111111110 0000 0
Q ss_pred ---CCCCchHHHHHHhcCce---eEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh
Q 001407 73 ---AGPNIPHFTKERVRRMK---LLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR 127 (1083)
Q Consensus 73 ---~~~~~~~~~~~~l~~kr---~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 127 (1083)
....+.-.-..+++++. -+||+|.+.+. .+...++.. .+.+|+||+|--..+
T Consensus 155 ~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR---~g~~sk~v~~GD~~Q 214 (262)
T PRK10536 155 LRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTR---LGENVTVIVNGDITQ 214 (262)
T ss_pred HHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhh---cCCCCEEEEeCChhh
Confidence 00000011123455553 49999998765 455555554 578999999876543
No 178
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.88 E-value=0.016 Score=69.95 Aligned_cols=94 Identities=13% Similarity=0.206 Sum_probs=61.7
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++.. +..+.|+..+......+.+|++| +...+...... ...+++++++++++..+.+.+.+-..+..
T Consensus 121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~S-Rc~iv~f~~ls~~ei~~~L~~ia~~egi~ 199 (614)
T PRK14971 121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILS-RCQIFDFNRIQVADIVNHLQYVASKEGIT 199 (614)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHh-hhheeecCCCCHHHHHHHHHHHHHHcCCC
Confidence 3457899998765 34667777666545566666555 44455544322 45779999999999998888766443321
Q ss_pred CchhHHHHHHHHHhhCCCch
Q 001407 165 PEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPL 184 (1083)
. ..+.+..|+..++|-.-
T Consensus 200 i--~~~al~~La~~s~gdlr 217 (614)
T PRK14971 200 A--EPEALNVIAQKADGGMR 217 (614)
T ss_pred C--CHHHHHHHHHHcCCCHH
Confidence 1 22346788889988664
No 179
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=96.87 E-value=0.014 Score=64.09 Aligned_cols=94 Identities=11% Similarity=0.176 Sum_probs=62.3
Q ss_pred ceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+++... .-..|+..+..-.+++.+|++|.+. .+.....+ ....+.+..++.+++.+.+.... .
T Consensus 113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-RCq~i~~~~~~~~~~~~~L~~~~----~- 186 (319)
T PRK08769 113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-RCQRLEFKLPPAHEALAWLLAQG----V- 186 (319)
T ss_pred CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-hheEeeCCCcCHHHHHHHHHHcC----C-
Confidence 45688999987653 4555666555445677777777654 44444332 45678899999999998886531 1
Q ss_pred CchhHHHHHHHHHhhCCCchhHHHHh
Q 001407 165 PEDLNWHSRSVVSYTKGNPLVLEVLG 190 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glPLal~~l~ 190 (1083)
. ...+..++..++|.|+....+.
T Consensus 187 ~---~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 187 S---ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred C---hHHHHHHHHHcCCCHHHHHHHh
Confidence 1 2226678999999998655443
No 180
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.024 Score=67.50 Aligned_cols=95 Identities=7% Similarity=0.141 Sum_probs=62.1
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. ++++.|+..+....+...+|++|.+ ..+...... ....++.+.++.++..+.+.+.+...+.
T Consensus 118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi 196 (563)
T PRK06647 118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQI 196 (563)
T ss_pred CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 45567899998755 4577777776654556666666544 344433321 3457899999999998888877644332
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
. -..+.+..|++.++|.+-
T Consensus 197 ~--id~eAl~lLa~~s~GdlR 215 (563)
T PRK06647 197 K--YEDEALKWIAYKSTGSVR 215 (563)
T ss_pred C--CCHHHHHHHHHHcCCCHH
Confidence 2 123456778888898774
No 181
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.005 Score=70.07 Aligned_cols=145 Identities=18% Similarity=0.202 Sum_probs=76.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.|=|.++|++|.|||.||++++++..--|-.+.-- .+.+...++. ...+-..+.+...
T Consensus 223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp------------------eivSGvSGES----EkkiRelF~~A~~ 280 (802)
T KOG0733|consen 223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP------------------EIVSGVSGES----EKKIRELFDQAKS 280 (802)
T ss_pred CCceeeeCCCCccHHHHHHHHhhhcCCceEeecch------------------hhhcccCccc----HHHHHHHHHHHhc
Confidence 46689999999999999999999764433222111 1111111110 0011123333344
Q ss_pred CceeEEEEeCCCChH------H-------HHHHhhccCC---CC-CCcEEEE---EecchhHHhhhc--cccccEEEecC
Q 001407 87 RMKLLIVLDDVNEVG------Q-------LKRLIGELDQ---FG-QGSRIVV---TTRDKRVLEKFR--GEEKKIYRVNG 144 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~------~-------~~~l~~~~~~---~~-~gsrIii---TTR~~~v~~~~~--~~~~~~~~v~~ 144 (1083)
.-.+++++|+++... | +..|+..+.. .+ .|-.||| |+|...+-.... +..++-+.+..
T Consensus 281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v 360 (802)
T KOG0733|consen 281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV 360 (802)
T ss_pred cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC
Confidence 568999999986421 1 2233333321 11 1333333 455544333222 34677788888
Q ss_pred CCHHHHHHHHHHhhcCCC-CCCchhHHHHH
Q 001407 145 LEFEEAFEHFCNFAFKEN-HCPEDLNWHSR 173 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~~~~-~~~~~~~~l~~ 173 (1083)
-++.+..++++..+-+-. ...-++..+|+
T Consensus 361 P~e~aR~~IL~~~~~~lrl~g~~d~~qlA~ 390 (802)
T KOG0733|consen 361 PSETAREEILRIICRGLRLSGDFDFKQLAK 390 (802)
T ss_pred CchHHHHHHHHHHHhhCCCCCCcCHHHHHh
Confidence 888888888877664322 22344444433
No 182
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.86 E-value=0.015 Score=60.48 Aligned_cols=34 Identities=32% Similarity=0.514 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.++|.|..|.||||+++.+.....++|..++.+.
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t 48 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT 48 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence 5789999999999999999999999997666554
No 183
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.85 E-value=0.0052 Score=64.77 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=29.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
...+.++|.+|+|||+||.++++.+..+-..++++.
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it 134 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT 134 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 457899999999999999999998766555566653
No 184
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.83 E-value=0.01 Score=74.16 Aligned_cols=151 Identities=19% Similarity=0.219 Sum_probs=83.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
.+-|.++|++|.|||++|+++++.....|- .+. . ..+......+ . ...+...+...-.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi---~v~-~----------~~l~~~~vGe---s-----e~~i~~~f~~A~~ 544 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFI---AVR-G----------PEILSKWVGE---S-----EKAIREIFRKARQ 544 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEE---EEe-h----------HHHhhcccCc---H-----HHHHHHHHHHHHh
Confidence 455889999999999999999998654431 111 0 0111111000 0 0001122233334
Q ss_pred CceeEEEEeCCCCh--------------HHHHHHhhccCCC--CCCcEEEEEecchhHHhhhc---cccccEEEecCCCH
Q 001407 87 RMKLLIVLDDVNEV--------------GQLKRLIGELDQF--GQGSRIVVTTRDKRVLEKFR---GEEKKIYRVNGLEF 147 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--------------~~~~~l~~~~~~~--~~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~L~~ 147 (1083)
.....|++|+++.. ..+..++..+... ..+-.||.||...+.....- +..+..+.++..+.
T Consensus 545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~ 624 (733)
T TIGR01243 545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE 624 (733)
T ss_pred cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence 45689999998532 1133344444322 23445666776655443221 23677899999999
Q ss_pred HHHHHHHHHhhcCCCCC-CchhHHHHHHHHHhhCCCc
Q 001407 148 EEAFEHFCNFAFKENHC-PEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 148 ~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~~glP 183 (1083)
++..++|..+.-+.... ..+ ...+++.+.|.-
T Consensus 625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCC
Confidence 99999998765332211 122 345666666654
No 185
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.83 E-value=0.0012 Score=64.70 Aligned_cols=80 Identities=21% Similarity=0.275 Sum_probs=39.6
Q ss_pred CCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCCCCCc--ccCCCCCCcEEec
Q 001407 516 DLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS--SFENLPGLEVLFV 593 (1083)
Q Consensus 516 ~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L~l 593 (1083)
....+||++|.+ ..++. |..++.|.+|.++.|.+...-|..-.-+++|+.|.+.+|++.++.+ .+..+|.|+.|.+
T Consensus 43 ~~d~iDLtdNdl-~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl 120 (233)
T KOG1644|consen 43 QFDAIDLTDNDL-RKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL 120 (233)
T ss_pred ccceecccccch-hhccc-CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence 444555555542 22222 4455555555555555554444444445555555555555554432 1344555555555
Q ss_pred cCCC
Q 001407 594 EDCS 597 (1083)
Q Consensus 594 ~~~~ 597 (1083)
-+|+
T Consensus 121 l~Np 124 (233)
T KOG1644|consen 121 LGNP 124 (233)
T ss_pred cCCc
Confidence 5544
No 186
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.82 E-value=0.0036 Score=63.55 Aligned_cols=118 Identities=23% Similarity=0.279 Sum_probs=53.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH-h-cccCceEEEEeeccccccccCCH-HHHHHHHHHhhh---ccccccCCCCchHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQ-F-SHEFEGSCFVSDVRGNSETAGGL-EHLQKQMLSTTL---SEKLEVAGPNIPHF 80 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~-~-~~~F~~~~~~~~~~~~~~~~~~l-~~l~~~ll~~l~---~~~~~~~~~~~~~~ 80 (1083)
..+|.+.|++|.|||.||.+.+-+ + .++|+..++....-+..+....+ ..+.+++...+. +.-...-+....+.
T Consensus 19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~~~~~~~ 98 (205)
T PF02562_consen 19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFGKEKLEE 98 (205)
T ss_dssp -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS-TTCHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhChHhHHH
Confidence 458999999999999999998864 2 46788888776543221110000 011111111000 00000001111111
Q ss_pred HH----------HHhcCc---eeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh
Q 001407 81 TK----------ERVRRM---KLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR 127 (1083)
Q Consensus 81 ~~----------~~l~~k---r~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 127 (1083)
+. ..++++ ...||+|.+.+. +++..++.. .+.|||||++--..+
T Consensus 99 ~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~~GD~~Q 157 (205)
T PF02562_consen 99 LIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIIITGDPSQ 157 (205)
T ss_dssp HHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEEEE----
T ss_pred HhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEEecCcee
Confidence 11 123333 468999999654 567777665 578999999986543
No 187
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.044 Score=56.37 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=99.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC----chHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN----IPHF 80 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~----~~~~ 80 (1083)
++-+++.++|.-|.|||+++++....+-+.=-.++.+. .+. .+...+...+..++...+ ...... ..+.
T Consensus 49 d~qg~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~-~s~~~~~~ai~~~l~~~p-~~~~~~~~e~~~~~ 121 (269)
T COG3267 49 DGQGILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPT-LSDATLLEAIVADLESQP-KVNVNAVLEQIDRE 121 (269)
T ss_pred cCCceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----Ccc-hhHHHHHHHHHHHhccCc-cchhHHHHHHHHHH
Confidence 45679999999999999999955554433222233332 222 455567777777765522 111111 1122
Q ss_pred HHHH-hcCce-eEEEEeCCCChH--HHHHHh--hccCC-CCCCcEEEEEecch-------hHHhhhccccccEEEecCCC
Q 001407 81 TKER-VRRMK-LLIVLDDVNEVG--QLKRLI--GELDQ-FGQGSRIVVTTRDK-------RVLEKFRGEEKKIYRVNGLE 146 (1083)
Q Consensus 81 ~~~~-l~~kr-~LlVlDdv~~~~--~~~~l~--~~~~~-~~~gsrIiiTTR~~-------~v~~~~~~~~~~~~~v~~L~ 146 (1083)
+... -+++| +.++.|+..+.. +++.+. ..+.. +..--+|+..-..+ .+.........-.|++++++
T Consensus 122 L~al~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~ 201 (269)
T COG3267 122 LAALVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLT 201 (269)
T ss_pred HHHHHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcC
Confidence 2222 24567 899999886542 344332 22211 11112345444332 11111111122239999999
Q ss_pred HHHHHHHHHHhhcCCCCCCch-hHHHHHHHHHhhCCCchhHHHHh
Q 001407 147 FEEAFEHFCNFAFKENHCPED-LNWHSRSVVSYTKGNPLVLEVLG 190 (1083)
Q Consensus 147 ~~ea~~Lf~~~a~~~~~~~~~-~~~l~~~i~~~~~glPLal~~l~ 190 (1083)
.++...++..+.-+...+.+- ..+....|.....|.|.++..++
T Consensus 202 ~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~ 246 (269)
T COG3267 202 EAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLA 246 (269)
T ss_pred hHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHH
Confidence 999999998876544332222 23456778888999998887765
No 188
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=96.74 E-value=0.00062 Score=69.39 Aligned_cols=88 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred cCCccEEEcCCcccc-----ccCccccCCCCCcEEEeeCCCCccc----cc-------ccccCCCCCcEEeccCCcCccc
Q 001407 491 SGKVTRLYLGQSAIE-----EVPSSIECLTDLEVLDLRGCKRLKR----IS-------TSFCKLRSLVTLILLGCLNLEH 554 (1083)
Q Consensus 491 ~~~L~~L~L~~~~l~-----~lp~~i~~l~~L~~L~L~~~~~~~~----lp-------~~l~~l~~L~~L~L~~~~~~~~ 554 (1083)
...+..++|++|-|. .+...|.+-.+|+..+++.-. ++. +| ..+-+++.|+..+||+|.+...
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~f-tgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAF-TGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhh-hcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 345678888888887 355566777888888887632 222 22 2356788888888888887777
Q ss_pred Cchh----hhhccccCeeccCCCCCCCCC
Q 001407 555 FPEI----LEKMEHLKRIYSDRTPITELP 579 (1083)
Q Consensus 555 ~p~~----l~~l~~L~~L~l~~~~l~~lp 579 (1083)
+|+. +.+-+.|.+|.+++|.+..+.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~a 136 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIA 136 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccc
Confidence 6654 445577888888888877443
No 189
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=96.73 E-value=0.063 Score=58.94 Aligned_cols=107 Identities=13% Similarity=0.154 Sum_probs=68.3
Q ss_pred eeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCCC
Q 001407 89 KLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP 165 (1083)
Q Consensus 89 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~ 165 (1083)
+-.+|+|+++.. +....|+..+..-.+++.+|++|.+. .+.....+ ....+.+++++++++.+.+.... .
T Consensus 109 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S-RCq~~~~~~~~~~~~~~~L~~~~----~-- 181 (319)
T PRK06090 109 YRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS-RCQQWVVTPPSTAQAMQWLKGQG----I-- 181 (319)
T ss_pred ceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-cceeEeCCCCCHHHHHHHHHHcC----C--
Confidence 457888888754 34666776665555677766666654 55555432 55678999999999999886542 1
Q ss_pred chhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHh
Q 001407 166 EDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLN 209 (1083)
Q Consensus 166 ~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~ 209 (1083)
+ .+..++..++|.|+....+. .....+.++..+..+.
T Consensus 182 ~----~~~~~l~l~~G~p~~A~~~~---~~~~~~~~~~~~~~l~ 218 (319)
T PRK06090 182 T----VPAYALKLNMGSPLKTLAMM---KEGGLEKYHKLERQLV 218 (319)
T ss_pred c----hHHHHHHHcCCCHHHHHHHh---CCCcHHHHHHHHHHHH
Confidence 1 13567899999998665443 2233344444444444
No 190
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.71 E-value=0.021 Score=61.66 Aligned_cols=24 Identities=38% Similarity=0.412 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
-|.|.|++|+|||++|+.++....
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg 46 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRD 46 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999998653
No 191
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=96.71 E-value=0.065 Score=55.46 Aligned_cols=96 Identities=23% Similarity=0.314 Sum_probs=54.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh-
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV- 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l- 85 (1083)
..-|.+||..|.|||++++++.+....+--..+-+. . .++..+ ..+.+.+
T Consensus 52 annvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~---k-----~~L~~l---------------------~~l~~~l~ 102 (249)
T PF05673_consen 52 ANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVS---K-----EDLGDL---------------------PELLDLLR 102 (249)
T ss_pred CcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEEC---H-----HHhccH---------------------HHHHHHHh
Confidence 445788999999999999999998766542222221 1 111111 1222222
Q ss_pred -cCceeEEEEeCCCC---hHHHHHHhhcc----CCCCCCcEEEEEecchhHHhh
Q 001407 86 -RRMKLLIVLDDVNE---VGQLKRLIGEL----DQFGQGSRIVVTTRDKRVLEK 131 (1083)
Q Consensus 86 -~~kr~LlVlDdv~~---~~~~~~l~~~~----~~~~~gsrIiiTTR~~~v~~~ 131 (1083)
+..||+|.+||..- ......|+..+ .....+..|..||--+++...
T Consensus 103 ~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 103 DRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred cCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 34599999999842 22333343332 222345556667766676554
No 192
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.017 Score=67.11 Aligned_cols=163 Identities=20% Similarity=0.217 Sum_probs=86.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
.-|.|.|..|+|||+||+++++.+.+ +..+++.-+.+..-....++++|+.+- ..+.+.+.-
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k--~~~~hv~~v~Cs~l~~~~~e~iQk~l~----------------~vfse~~~~ 493 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSK--DLIAHVEIVSCSTLDGSSLEKIQKFLN----------------NVFSEALWY 493 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhcc--ccceEEEEEechhccchhHHHHHHHHH----------------HHHHHHHhh
Confidence 45889999999999999999998763 333444333332222244666665543 334444556
Q ss_pred ceeEEEEeCCCChH--------H-------HHHHhhcc-C-CCCCCcE--EEEEecchhHHhhh-c--cccccEEEecCC
Q 001407 88 MKLLIVLDDVNEVG--------Q-------LKRLIGEL-D-QFGQGSR--IVVTTRDKRVLEKF-R--GEEKKIYRVNGL 145 (1083)
Q Consensus 88 kr~LlVlDdv~~~~--------~-------~~~l~~~~-~-~~~~gsr--IiiTTR~~~v~~~~-~--~~~~~~~~v~~L 145 (1083)
..-+|||||++-.. | +..++... . ....+.+ +|-|.....-.... . .-...+..++.+
T Consensus 494 ~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap 573 (952)
T KOG0735|consen 494 APSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAP 573 (952)
T ss_pred CCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCc
Confidence 68899999985321 1 11111110 0 1224444 33344333222111 1 114456778888
Q ss_pred CHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCC-chhHHHHh
Q 001407 146 EFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN-PLVLEVLG 190 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl-PLal~~l~ 190 (1083)
...+..++++... ..........+ ..-+..+|+|. |.-+.++.
T Consensus 574 ~~~~R~~IL~~~~-s~~~~~~~~~d-Ld~ls~~TEGy~~~DL~ifV 617 (952)
T KOG0735|consen 574 AVTRRKEILTTIF-SKNLSDITMDD-LDFLSVKTEGYLATDLVIFV 617 (952)
T ss_pred chhHHHHHHHHHH-HhhhhhhhhHH-HHHHHHhcCCccchhHHHHH
Confidence 8888777776543 33321111122 22267777764 55555443
No 193
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.69 E-value=0.0068 Score=67.00 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=29.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-+.++|..|+|||.||.++++.+..+-..++|+.
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t 218 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT 218 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 66899999999999999999998766655677765
No 194
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.69 E-value=0.021 Score=63.50 Aligned_cols=92 Identities=12% Similarity=0.121 Sum_probs=61.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-.+|+|+++.. +.-..|+..+..-.+++.+|.+|.+. .+.....+ ....+.+.+++++++.+.+.... +
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrS-RCq~~~~~~~~~~~~~~~L~~~~-~--- 181 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRS-RCRLHYLAPPPEQYALTWLSREV-T--- 181 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh-ccccccCCCCCHHHHHHHHHHcc-C---
Confidence 44567889988754 34566666665555677777777665 45545432 44578999999999998886532 1
Q ss_pred CCchhHHHHHHHHHhhCCCchhH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLVL 186 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLal 186 (1083)
. ..+.+..++..++|.|...
T Consensus 182 ~---~~~~a~~~~~la~G~~~~A 201 (334)
T PRK07993 182 M---SQDALLAALRLSAGAPGAA 201 (334)
T ss_pred C---CHHHHHHHHHHcCCCHHHH
Confidence 1 1223678899999999643
No 195
>PRK08118 topology modulation protein; Reviewed
Probab=96.67 E-value=0.0038 Score=62.11 Aligned_cols=34 Identities=26% Similarity=0.526 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc---ccCceEEEE
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS---HEFEGSCFV 41 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~---~~F~~~~~~ 41 (1083)
+.|.|+|++|+||||+|+++++... -+|+..+|-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 3589999999999999999999753 346666653
No 196
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.66 E-value=0.017 Score=64.07 Aligned_cols=181 Identities=16% Similarity=0.161 Sum_probs=99.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCce--EEEEeeccccccccCCHHHHHHHHHHhh-hccccccCCCCchHHHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEG--SCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKLEVAGPNIPHFTK 82 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~--~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~~~~~~~~~~~~~ 82 (1083)
..+-+-|.|-+|.|||.+..+++.+....... ++++.+..-. ....+...+.+.+ ........+.+....+.
T Consensus 174 t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~-----~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~ 248 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLT-----EASAIFKKIFSSLLQDLVSPGTGMQHLEKFE 248 (529)
T ss_pred cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeecccc-----chHHHHHHHHHHHHHHhcCCchhHHHHHHHH
Confidence 34567789999999999999999976544333 4666544211 2234444444443 12222222233345555
Q ss_pred HHhcCc--eeEEEEeCCCChHH--HHHHhhccCCCC-CCcEEEEEecchhH------Hhhhc---cccccEEEecCCCHH
Q 001407 83 ERVRRM--KLLIVLDDVNEVGQ--LKRLIGELDQFG-QGSRIVVTTRDKRV------LEKFR---GEEKKIYRVNGLEFE 148 (1083)
Q Consensus 83 ~~l~~k--r~LlVlDdv~~~~~--~~~l~~~~~~~~-~gsrIiiTTR~~~v------~~~~~---~~~~~~~~v~~L~~~ 148 (1083)
+..++. -+|+|+|.++.... -..+...+.|.. +++|+|+.---..+ +.... .-....+.-++-+.+
T Consensus 249 ~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~ 328 (529)
T KOG2227|consen 249 KHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKD 328 (529)
T ss_pred HHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHH
Confidence 555554 58999998875432 223333444433 78887765432211 11111 013456777889999
Q ss_pred HHHHHHHHhhcCCCCCC---chhHHHHHHHHHhhCCCchhHHHHhh
Q 001407 149 EAFEHFCNFAFKENHCP---EDLNWHSRSVVSYTKGNPLVLEVLGS 191 (1083)
Q Consensus 149 ea~~Lf~~~a~~~~~~~---~~~~~l~~~i~~~~~glPLal~~l~~ 191 (1083)
+-.+++..+.-...... ...+-.|+.++...|.+-.|+.+.-+
T Consensus 329 qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~ 374 (529)
T KOG2227|consen 329 QIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRR 374 (529)
T ss_pred HHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 99999998864332211 12233344444444455555555443
No 197
>PTZ00202 tuzin; Provisional
Probab=96.66 E-value=0.02 Score=63.75 Aligned_cols=140 Identities=18% Similarity=0.173 Sum_probs=80.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
..+++.|.|++|+|||||++.+..... ..+++.+.+ +..++.+.++.+++..... ...++.+.+.+.+
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr-------g~eElLr~LL~ALGV~p~~-~k~dLLrqIqeaL 352 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR-------GTEDTLRSVVKALGVPNVE-ACGDLLDFISEAC 352 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC-------CHHHHHHHHHHHcCCCCcc-cHHHHHHHHHHHH
Confidence 357999999999999999999997654 336665543 4578889999988863222 1122333333322
Q ss_pred -----c-CceeEEEEe--CCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhc-cccccEEEecCCCHHHHHHHHHH
Q 001407 86 -----R-RMKLLIVLD--DVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR-GEEKKIYRVNGLEFEEAFEHFCN 156 (1083)
Q Consensus 86 -----~-~kr~LlVlD--dv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~-~~~~~~~~v~~L~~~ea~~Lf~~ 156 (1083)
. +++.+||+- .=.+..-+-.=.-.+.....-|.|++----+.+..... .+.-+.|-++.|+.++|.++-..
T Consensus 353 l~~~~e~GrtPVLII~lreg~~l~rvyne~v~la~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h 432 (550)
T PTZ00202 353 RRAKKMNGETPLLVLKLREGSSLQRVYNEVVALACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH 432 (550)
T ss_pred HHHHHhCCCCEEEEEEecCCCcHHHHHHHHHHHHccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence 2 566777764 22222211110111111123456666444333322111 12446799999999999988654
Q ss_pred h
Q 001407 157 F 157 (1083)
Q Consensus 157 ~ 157 (1083)
.
T Consensus 433 ~ 433 (550)
T PTZ00202 433 A 433 (550)
T ss_pred c
Confidence 3
No 198
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.66 E-value=0.016 Score=56.39 Aligned_cols=117 Identities=18% Similarity=0.134 Sum_probs=60.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhc----cccccCCCC-------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLS----EKLEVAGPN------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~----~~~~~~~~~------- 76 (1083)
.+|-|++..|.||||+|...+-+...+=..+.++.-+.... . .+-....+.+ ..+.- ........+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~-~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~ 79 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-K-YGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAA 79 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-c-cCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHH
Confidence 57889999999999999999887655544555543333211 1 2222333332 11000 000000000
Q ss_pred ---chHHHHHHhcCc-eeEEEEeCCCCh-----HHHHHHhhccCCCCCCcEEEEEecchh
Q 001407 77 ---IPHFTKERVRRM-KLLIVLDDVNEV-----GQLKRLIGELDQFGQGSRIVVTTRDKR 127 (1083)
Q Consensus 77 ---~~~~~~~~l~~k-r~LlVlDdv~~~-----~~~~~l~~~~~~~~~gsrIiiTTR~~~ 127 (1083)
..+..++.+... -=|+|||.+... -..+.+...+....++.-+|+|.|+..
T Consensus 80 a~~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 80 AAEGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 113333444433 349999987432 122333333333456778999999863
No 199
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=96.64 E-value=0.024 Score=62.54 Aligned_cols=95 Identities=15% Similarity=0.225 Sum_probs=60.0
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+.+-++|+|+++.. ...+.|+..+.... .+.+|++| +...+.....+ ....++++++++++..+.+.+....+.
T Consensus 123 ~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~- 199 (314)
T PRK07399 123 APRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEI- 199 (314)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhcccc-
Confidence 34568889988755 34556665554333 44555444 44455554432 567899999999999999987642111
Q ss_pred CCchhHHHHHHHHHhhCCCchhHHH
Q 001407 164 CPEDLNWHSRSVVSYTKGNPLVLEV 188 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPLal~~ 188 (1083)
.......++..++|.|..+..
T Consensus 200 ----~~~~~~~l~~~a~Gs~~~al~ 220 (314)
T PRK07399 200 ----LNINFPELLALAQGSPGAAIA 220 (314)
T ss_pred ----chhHHHHHHHHcCCCHHHHHH
Confidence 111135789999999965543
No 200
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=96.63 E-value=0.019 Score=64.05 Aligned_cols=69 Identities=13% Similarity=0.231 Sum_probs=47.3
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
.+-++|+|+++.. +..+.|+..+....+++.+|++|.+.+ +.....+ ....++++++++++..+.+...
T Consensus 110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrS-Rc~~i~~~~~~~~~~~~~L~~~ 181 (329)
T PRK08058 110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILS-RCQVVEFRPLPPESLIQRLQEE 181 (329)
T ss_pred CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHh-hceeeeCCCCCHHHHHHHHHHc
Confidence 4456888988654 345667776665566787787776653 3333322 5678999999999998888653
No 201
>PHA00729 NTP-binding motif containing protein
Probab=96.62 E-value=0.0071 Score=62.18 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=24.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.+...|.|.|.+|+||||||.++.+++.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999998753
No 202
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.60 E-value=0.0055 Score=60.90 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
++.|+|.+|+||||+|..++.....+-..++|+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~ 34 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD 34 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence 4789999999999999999987765555666665
No 203
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.55 E-value=0.031 Score=59.73 Aligned_cols=179 Identities=12% Similarity=0.087 Sum_probs=97.6
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCc------eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCC-C
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFE------GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP-N 76 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~------~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~-~ 76 (1083)
....+-+.|+|.+|+|||++++++...+...++ .++.+. .+...+...+...|+..++......+.. .
T Consensus 58 ~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq-----~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~ 132 (302)
T PF05621_consen 58 RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ-----MPPEPDERRFYSAILEALGAPYRPRDRVAK 132 (302)
T ss_pred ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe-----cCCCCChHHHHHHHHHHhCcccCCCCCHHH
Confidence 345567899999999999999999986543332 222332 2223778899999999977654333222 2
Q ss_pred chHHHHHHhcCc-eeEEEEeCCCCh-----HHHHHHhhccCCC---CCCcEEEEEecchhHHhhhcc---ccccEEEecC
Q 001407 77 IPHFTKERVRRM-KLLIVLDDVNEV-----GQLKRLIGELDQF---GQGSRIVVTTRDKRVLEKFRG---EEKKIYRVNG 144 (1083)
Q Consensus 77 ~~~~~~~~l~~k-r~LlVlDdv~~~-----~~~~~l~~~~~~~---~~gsrIiiTTR~~~v~~~~~~---~~~~~~~v~~ 144 (1083)
......+.++.- --++|+|.+.+. .+-..++..+... -.=+-|.|-|++.--+-.... ....++.++.
T Consensus 133 ~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~ 212 (302)
T PF05621_consen 133 LEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPR 212 (302)
T ss_pred HHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCC
Confidence 223344455443 348899998653 1112222222111 233456666665422211100 1234556665
Q ss_pred CCHHH-HHHHHHHhhc--C-CCCCCchhHHHHHHHHHhhCCCchhHH
Q 001407 145 LEFEE-AFEHFCNFAF--K-ENHCPEDLNWHSRSVVSYTKGNPLVLE 187 (1083)
Q Consensus 145 L~~~e-a~~Lf~~~a~--~-~~~~~~~~~~l~~~i~~~~~glPLal~ 187 (1083)
...++ ...|+..... . .....-...++++.|...++|+.--+.
T Consensus 213 W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~ 259 (302)
T PF05621_consen 213 WELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELS 259 (302)
T ss_pred CCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHH
Confidence 55443 4444432211 1 111123346788999999999875443
No 204
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.55 E-value=0.055 Score=64.78 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=59.2
Q ss_pred CceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCC
Q 001407 87 RMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENH 163 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~ 163 (1083)
+++-++|+|+++.. +.+..|+..+........+|++| ....+.....+ ....++...++.++..+.+.+.+-..+.
T Consensus 118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi 196 (559)
T PRK05563 118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILS-RCQRFDFKRISVEDIVERLKYILDKEGI 196 (559)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHh-HheEEecCCCCHHHHHHHHHHHHHHcCC
Confidence 44567899999754 45777776665434455555444 44444433321 3456889999999988888877643322
Q ss_pred CCchhHHHHHHHHHhhCCCch
Q 001407 164 CPEDLNWHSRSVVSYTKGNPL 184 (1083)
Q Consensus 164 ~~~~~~~l~~~i~~~~~glPL 184 (1083)
.- ..+.+..+++.++|-+.
T Consensus 197 ~i--~~~al~~ia~~s~G~~R 215 (559)
T PRK05563 197 EY--EDEALRLIARAAEGGMR 215 (559)
T ss_pred CC--CHHHHHHHHHHcCCCHH
Confidence 11 13446778888888764
No 205
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.54 E-value=0.0079 Score=66.46 Aligned_cols=91 Identities=14% Similarity=0.162 Sum_probs=54.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC-ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC------chHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF-EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN------IPHF 80 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~------~~~~ 80 (1083)
+-++|+|.+|+|||||++++++.+..+. +..+++..+.+.. ..+.++.+.+...+.....+..... ....
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~---~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~ 210 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERP---EEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLE 210 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCC---CCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHH
Confidence 4569999999999999999999776544 3333443343332 4566777777665433221111111 1111
Q ss_pred HHHHh--cCceeEEEEeCCCChH
Q 001407 81 TKERV--RRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 81 ~~~~l--~~kr~LlVlDdv~~~~ 101 (1083)
+.+++ ++++++||+|++....
T Consensus 211 ~Ae~f~~~GkdVVLvlDsltr~A 233 (380)
T PRK12608 211 RAKRLVEQGKDVVILLDSLTRLA 233 (380)
T ss_pred HHHHHHHcCCCEEEEEeCcHHHH
Confidence 11222 5789999999986543
No 206
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.53 E-value=0.052 Score=58.87 Aligned_cols=144 Identities=15% Similarity=0.210 Sum_probs=80.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhh-cccccc--CC--CC---ch
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL-SEKLEV--AG--PN---IP 78 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~~~~~--~~--~~---~~ 78 (1083)
+.+|-|+|-+|.|||.+.+++.+... ...+|+..+.. +....+..+++.... ...+.. .+ .. ..
T Consensus 30 PS~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n~~ec-----ft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i 101 (438)
T KOG2543|consen 30 PSIVHIYGHSGTGKTYLVRQLLRKLN---LENVWLNCVEC-----FTYAILLEKILNKSQLADKDGDKVEGDAENFSDFI 101 (438)
T ss_pred ceeEEEeccCCCchhHHHHHHHhhcC---CcceeeehHHh-----ccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHH
Confidence 44569999999999999999998763 34678876554 455566666666653 111111 11 11 11
Q ss_pred HHHHH--Hhc--CceeEEEEeCCCChHHHHH-----HhhccCCCCCCcEEEEEecchhHHhh---hccccccEEEecCCC
Q 001407 79 HFTKE--RVR--RMKLLIVLDDVNEVGQLKR-----LIGELDQFGQGSRIVVTTRDKRVLEK---FRGEEKKIYRVNGLE 146 (1083)
Q Consensus 79 ~~~~~--~l~--~kr~LlVlDdv~~~~~~~~-----l~~~~~~~~~gsrIiiTTR~~~v~~~---~~~~~~~~~~v~~L~ 146 (1083)
..+.+ ... +++++||||+++...+.++ +..-..-.....-.|+++-...-... ++.....++..+.-+
T Consensus 102 ~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys 181 (438)
T KOG2543|consen 102 YLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYS 181 (438)
T ss_pred HHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCC
Confidence 22222 122 4589999999987765332 21111111112334444433322211 231233445678889
Q ss_pred HHHHHHHHHHhh
Q 001407 147 FEEAFEHFCNFA 158 (1083)
Q Consensus 147 ~~ea~~Lf~~~a 158 (1083)
.+|..+++.+.-
T Consensus 182 ~~e~~~Il~~~~ 193 (438)
T KOG2543|consen 182 VEETQVILSRDN 193 (438)
T ss_pred HHHHHHHHhcCC
Confidence 999999987643
No 207
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.53 E-value=0.017 Score=58.35 Aligned_cols=41 Identities=24% Similarity=0.504 Sum_probs=34.7
Q ss_pred CCCCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 2 DSSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 2 ~~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
+......+|.+.|+.|.||||+|+.++..+..++...+++.
T Consensus 2 ~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~ 42 (176)
T PRK05541 2 QMKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD 42 (176)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 44556779999999999999999999999887777777774
No 208
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.53 E-value=0.0093 Score=63.63 Aligned_cols=36 Identities=28% Similarity=0.298 Sum_probs=28.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
..-+.++|.+|+|||.||.++.+++.+.--.+.|+.
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~ 140 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT 140 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE
Confidence 446889999999999999999999874444555554
No 209
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.48 E-value=0.07 Score=59.24 Aligned_cols=90 Identities=14% Similarity=0.219 Sum_probs=59.1
Q ss_pred eeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecc-hhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCCC
Q 001407 89 KLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRD-KRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCP 165 (1083)
Q Consensus 89 r~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~-~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~ 165 (1083)
+-++|+|+++.. +....|+..+..-.++..+|.+|.+ ..+.....+ ....+.+.+++.++..+.+.... . .
T Consensus 133 ~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~----~-~ 206 (342)
T PRK06964 133 ARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG----V-A 206 (342)
T ss_pred ceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC----C-C
Confidence 447788888754 4567777776655667766665555 455555432 45689999999999999987652 1 1
Q ss_pred chhHHHHHHHHHhhCCCchhHHHH
Q 001407 166 EDLNWHSRSVVSYTKGNPLVLEVL 189 (1083)
Q Consensus 166 ~~~~~l~~~i~~~~~glPLal~~l 189 (1083)
+ ...++..++|.|.....+
T Consensus 207 ~-----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 207 D-----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred h-----HHHHHHHcCCCHHHHHHH
Confidence 1 223577889999744433
No 210
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.46 E-value=0.0024 Score=59.98 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|+|.|++|+||||+|++++.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 211
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.46 E-value=0.014 Score=72.58 Aligned_cols=128 Identities=16% Similarity=0.203 Sum_probs=68.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhccc-----C-ceEEEEeeccccccc---cCCHHHHHHHHHHhhhccccccCCCCch
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHE-----F-EGSCFVSDVRGNSET---AGGLEHLQKQMLSTTLSEKLEVAGPNIP 78 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-----F-~~~~~~~~~~~~~~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~~ 78 (1083)
.-+.++|++|+|||++|+.++.++... + ...+|..+....... ......-.+
T Consensus 204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~------------------- 264 (731)
T TIGR02639 204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLK------------------- 264 (731)
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHH-------------------
Confidence 346799999999999999999976432 1 234443321110000 000001111
Q ss_pred HHHHHHhcCceeEEEEeCCCCh-----------HHHHHHhhccCCCCCC-cEEEEEecchhHHh------hhccccccEE
Q 001407 79 HFTKERVRRMKLLIVLDDVNEV-----------GQLKRLIGELDQFGQG-SRIVVTTRDKRVLE------KFRGEEKKIY 140 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~g-srIiiTTR~~~v~~------~~~~~~~~~~ 140 (1083)
..+.+.-..++++|++|+++.. +.-+.+.+.+. .| -++|-+|...+... .... ....+
T Consensus 265 ~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~---~g~i~~IgaTt~~e~~~~~~~d~al~r-Rf~~i 340 (731)
T TIGR02639 265 AVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS---SGKLRCIGSTTYEEYKNHFEKDRALSR-RFQKI 340 (731)
T ss_pred HHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh---CCCeEEEEecCHHHHHHHhhhhHHHHH-hCceE
Confidence 1222211245789999998632 12233444433 23 34455554422211 1111 23578
Q ss_pred EecCCCHHHHHHHHHHhh
Q 001407 141 RVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 141 ~v~~L~~~ea~~Lf~~~a 158 (1083)
+++.++.++..+++....
T Consensus 341 ~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 341 DVGEPSIEETVKILKGLK 358 (731)
T ss_pred EeCCCCHHHHHHHHHHHH
Confidence 999999999999998654
No 212
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.031 Score=67.19 Aligned_cols=99 Identities=12% Similarity=0.144 Sum_probs=60.8
Q ss_pred ceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEe-cchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTT-RDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTT-R~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
++-++|+|+|+.. ...+.|+..+....+...+|++| ....+...... ....++.+.++.++..+.+...+-..+..
T Consensus 119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~L~~i~~~egi~ 197 (576)
T PRK14965 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILS-RCQRFDFRRIPLQKIVDRLRYIADQEGIS 197 (576)
T ss_pred CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHH-hhhhhhcCCCCHHHHHHHHHHHHHHhCCC
Confidence 3457889998754 34666776665544566666555 44445444321 34678899999999888887655332221
Q ss_pred CchhHHHHHHHHHhhCCCc-hhHHHH
Q 001407 165 PEDLNWHSRSVVSYTKGNP-LVLEVL 189 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~glP-Lal~~l 189 (1083)
-..+.+..+++.++|.. .|+..+
T Consensus 198 --i~~~al~~la~~a~G~lr~al~~L 221 (576)
T PRK14965 198 --ISDAALALVARKGDGSMRDSLSTL 221 (576)
T ss_pred --CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 12344677888888865 444444
No 213
>PRK07261 topology modulation protein; Provisional
Probab=96.45 E-value=0.01 Score=59.31 Aligned_cols=23 Identities=35% Similarity=0.653 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.|+|+|++|+||||||+++....
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999998754
No 214
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=96.45 E-value=0.02 Score=69.84 Aligned_cols=131 Identities=21% Similarity=0.255 Sum_probs=73.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
+-|.|+|++|.|||++|+.++.+....|- .+. . ..+....... . .......+......
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~---~is-~----------~~~~~~~~g~-~-------~~~~~~~f~~a~~~ 243 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFF---TIS-G----------SDFVEMFVGV-G-------ASRVRDMFEQAKKA 243 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEE---EEe-h----------HHhHHhhhcc-c-------HHHHHHHHHHHHhc
Confidence 34899999999999999999987654331 111 0 0111111000 0 00011222223334
Q ss_pred ceeEEEEeCCCChH----------------HHHHHhhccCCCC--CCcEEEEEecchhHHhhhc---cccccEEEecCCC
Q 001407 88 MKLLIVLDDVNEVG----------------QLKRLIGELDQFG--QGSRIVVTTRDKRVLEKFR---GEEKKIYRVNGLE 146 (1083)
Q Consensus 88 kr~LlVlDdv~~~~----------------~~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~L~ 146 (1083)
...+|++|+++... .+..++..+..+. .+.-+|.||...+.....- +..++.+.++..+
T Consensus 244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd 323 (644)
T PRK10733 244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD 323 (644)
T ss_pred CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence 57889999986531 1333433333222 3444555777665443221 2357788999999
Q ss_pred HHHHHHHHHHhhcC
Q 001407 147 FEEAFEHFCNFAFK 160 (1083)
Q Consensus 147 ~~ea~~Lf~~~a~~ 160 (1083)
.++..+++..+.-+
T Consensus 324 ~~~R~~Il~~~~~~ 337 (644)
T PRK10733 324 VRGREQILKVHMRR 337 (644)
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999887643
No 215
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.45 E-value=0.035 Score=69.44 Aligned_cols=151 Identities=21% Similarity=0.226 Sum_probs=77.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCC-HHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGG-LEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~-l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
.+-|.++|++|+|||++|+++++.....| +.+. ..+......+ .... +...+....
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~~g~~~~~-------------------l~~lf~~a~ 268 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKYYGESEER-------------------LREIFKEAE 268 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhcccccHHHHH-------------------HHHHHHHHH
Confidence 46689999999999999999998764432 2221 1000000000 0000 112223333
Q ss_pred cCceeEEEEeCCCCh-------------HHHHHHhhccCCC-CCCcEEEE-EecchhHH-hhhc--cccccEEEecCCCH
Q 001407 86 RRMKLLIVLDDVNEV-------------GQLKRLIGELDQF-GQGSRIVV-TTRDKRVL-EKFR--GEEKKIYRVNGLEF 147 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~-~~gsrIii-TTR~~~v~-~~~~--~~~~~~~~v~~L~~ 147 (1083)
.....+|++|+++.. .....+...+... ..+..++| ||....-. .... +..+..++++..+.
T Consensus 269 ~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 269 ENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 445678999997542 1123333333222 23344454 55443211 1111 11456788888899
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCc
Q 001407 148 EEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP 183 (1083)
Q Consensus 148 ~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glP 183 (1083)
++..+++..+.-+.... ++ .....+++.+.|.-
T Consensus 349 ~~R~~Il~~~~~~~~l~-~d--~~l~~la~~t~G~~ 381 (733)
T TIGR01243 349 RARKEILKVHTRNMPLA-ED--VDLDKLAEVTHGFV 381 (733)
T ss_pred HHHHHHHHHHhcCCCCc-cc--cCHHHHHHhCCCCC
Confidence 99999988654221111 11 12456777777754
No 216
>PRK04132 replication factor C small subunit; Provisional
Probab=96.41 E-value=0.032 Score=68.78 Aligned_cols=154 Identities=14% Similarity=0.181 Sum_probs=91.4
Q ss_pred CCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcCceeEEE
Q 001407 15 MGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMKLLIV 93 (1083)
Q Consensus 15 ~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~kr~LlV 93 (1083)
|.|+||||+|.++++++-. .+...+.-.+... . .++..+. ++......... . -..+.-++|
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd---~-rgid~IR-~iIk~~a~~~~-~------------~~~~~KVvI 635 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASD---E-RGINVIR-EKVKEFARTKP-I------------GGASFKIIF 635 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCC---c-ccHHHHH-HHHHHHHhcCC-c------------CCCCCEEEE
Confidence 7899999999999997632 2333332222221 1 3444333 22222111000 0 012456899
Q ss_pred EeCCCChH--HHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCCCchhHH
Q 001407 94 LDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNW 170 (1083)
Q Consensus 94 lDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~ 170 (1083)
+|+++... +.+.|...+.......++|++|.+.. +.....+ ....++++++++++-.+.+.+.+-.+... -..+
T Consensus 636 IDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~--i~~e 712 (846)
T PRK04132 636 LDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE--LTEE 712 (846)
T ss_pred EECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCC--CCHH
Confidence 99998764 56677776665556777777776653 3333322 46789999999999888877665332221 1134
Q ss_pred HHHHHHHhhCCCch-hHHHH
Q 001407 171 HSRSVVSYTKGNPL-VLEVL 189 (1083)
Q Consensus 171 l~~~i~~~~~glPL-al~~l 189 (1083)
....|++.++|.+- |+..+
T Consensus 713 ~L~~Ia~~s~GDlR~AIn~L 732 (846)
T PRK04132 713 GLQAILYIAEGDMRRAINIL 732 (846)
T ss_pred HHHHHHHHcCCCHHHHHHHH
Confidence 57889999999874 44333
No 217
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.40 E-value=0.012 Score=61.38 Aligned_cols=147 Identities=18% Similarity=0.172 Sum_probs=82.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccc-------cccCCCCch-
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEK-------LEVAGPNIP- 78 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~-------~~~~~~~~~- 78 (1083)
-.++||+|..|.||||+|+.+..-...- .+.+++....-..-......+...+++...+... ....+.+..
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~pt-~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEEPT-SGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcCCC-CceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 3589999999999999999999755433 3444443211000000222333444444433111 112333333
Q ss_pred HHHHHHhcCceeEEEEeC------CCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHHH
Q 001407 79 HFTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDd------v~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~ 152 (1083)
-.+.+.+.-+.-++|.|. |.-..|+-.++..+. ...|-..+..|.|-.++..+.......|.=+-.+...+.+
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq-~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQ-EELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHH-HHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 355667788889999995 333455555555543 2457778999999999888752222223223333444555
Q ss_pred HHH
Q 001407 153 HFC 155 (1083)
Q Consensus 153 Lf~ 155 (1083)
+|.
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 554
No 218
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.40 E-value=0.009 Score=61.01 Aligned_cols=58 Identities=16% Similarity=0.130 Sum_probs=36.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSE 68 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~ 68 (1083)
+++|.++|+.|+||||.+.+++.+.+.+-..+..+. ... .+ .+..+-.+...+.++..
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis-~D~--~R-~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS-ADT--YR-IGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE-EST--SS-THHHHHHHHHHHHHTEE
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec-CCC--CC-ccHHHHHHHHHHHhccc
Confidence 479999999999999999999987766644455554 211 11 23334444555555543
No 219
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.38 E-value=0.038 Score=69.67 Aligned_cols=93 Identities=24% Similarity=0.254 Sum_probs=48.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
.++.++|+.|+|||++|+.+++.....-...+.+. +.+.... .. ...+.+......+.+....+.+.++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id-~se~~~~-----~~----~~~LiG~~pgy~g~~~~g~l~~~v~~ 668 (857)
T PRK10865 599 GSFLFLGPTGVGKTELCKALANFMFDSDDAMVRID-MSEFMEK-----HS----VSRLVGAPPGYVGYEEGGYLTEAVRR 668 (857)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEE-hHHhhhh-----hh----HHHHhCCCCcccccchhHHHHHHHHh
Confidence 57899999999999999999986543323333332 2221111 11 11111111111111111334444433
Q ss_pred c-eeEEEEeCCC--ChHHHHHHhhcc
Q 001407 88 M-KLLIVLDDVN--EVGQLKRLIGEL 110 (1083)
Q Consensus 88 k-r~LlVlDdv~--~~~~~~~l~~~~ 110 (1083)
+ .-+|+||+++ +.+.+..+...+
T Consensus 669 ~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 669 RPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred CCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 3 3589999997 444566665544
No 220
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.38 E-value=0.015 Score=63.91 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=29.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
..+-+.|+|..|+|||.||.++++.+..+-..+.|+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3456899999999999999999998765544556664
No 221
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.38 E-value=0.027 Score=54.60 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR 87 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~ 87 (1083)
.+++|.|..|.|||||++.+...... ..+.+++.......-. ..+. . +....-.+.+.+..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~~~~~i~~~-~~lS--------~---------G~~~rv~laral~~ 87 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEP-DEGIVTWGSTVKIGYF-EQLS--------G---------GEKMRLALAKLLLE 87 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCC-CceEEEECCeEEEEEE-ccCC--------H---------HHHHHHHHHHHHhc
Confidence 58999999999999999999875432 3455555421111000 0000 0 00000233445555
Q ss_pred ceeEEEEeCCC---ChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 88 MKLLIVLDDVN---EVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 88 kr~LlVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
+.-++++|+.. |.+..+.+...+... +..||++|.+.+..... .++++.+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~---~d~v~~l 140 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQV---ATKIIEL 140 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh---CCEEEEE
Confidence 66788999753 222222232222222 34688898887766554 3455544
No 222
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.36 E-value=0.06 Score=67.13 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=49.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
..++.++|+.|+|||++|+.++..+.. ..+.+. +.+.... .....+ .. .....-+.+....+.+.++
T Consensus 484 ~~~~lf~Gp~GvGKT~lA~~la~~l~~---~~~~~d-~se~~~~-~~~~~l----ig----~~~gyvg~~~~~~l~~~~~ 550 (731)
T TIGR02639 484 VGSFLFTGPTGVGKTELAKQLAEALGV---HLERFD-MSEYMEK-HTVSRL----IG----APPGYVGFEQGGLLTEAVR 550 (731)
T ss_pred ceeEEEECCCCccHHHHHHHHHHHhcC---CeEEEe-Cchhhhc-ccHHHH----hc----CCCCCcccchhhHHHHHHH
Confidence 457899999999999999999987632 223332 3222221 111111 11 1111111122234555554
Q ss_pred Cc-eeEEEEeCCCCh--HHHHHHhhccC
Q 001407 87 RM-KLLIVLDDVNEV--GQLKRLIGELD 111 (1083)
Q Consensus 87 ~k-r~LlVlDdv~~~--~~~~~l~~~~~ 111 (1083)
.+ .-+|+||+++.. +.++.|+..+.
T Consensus 551 ~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 551 KHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred hCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 44 458999999754 33555555443
No 223
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.35 E-value=0.054 Score=60.39 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=82.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcCce
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRMK 89 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~kr 89 (1083)
-.++|++|.|||+++.++++-+ +.-++.....+.... . + .+.++.. ...|
T Consensus 238 YLLYGPPGTGKSS~IaAmAn~L----~ydIydLeLt~v~~n-~---d-Lr~LL~~---------------------t~~k 287 (457)
T KOG0743|consen 238 YLLYGPPGTGKSSFIAAMANYL----NYDIYDLELTEVKLD-S---D-LRHLLLA---------------------TPNK 287 (457)
T ss_pred ceeeCCCCCCHHHHHHHHHhhc----CCceEEeeeccccCc-H---H-HHHHHHh---------------------CCCC
Confidence 4689999999999999999855 444555444433332 1 1 2222211 1123
Q ss_pred eEEEEeCCCCh--------------------HHHHHHhhccC--CCCC-CcEE-EEEecchhHHhhh---ccccccEEEe
Q 001407 90 LLIVLDDVNEV--------------------GQLKRLIGELD--QFGQ-GSRI-VVTTRDKRVLEKF---RGEEKKIYRV 142 (1083)
Q Consensus 90 ~LlVlDdv~~~--------------------~~~~~l~~~~~--~~~~-gsrI-iiTTR~~~v~~~~---~~~~~~~~~v 142 (1083)
-.||+.|++-. -.+..|+..++ |... +-|| |.||-+++-+... .+..+..+.+
T Consensus 288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m 367 (457)
T KOG0743|consen 288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM 367 (457)
T ss_pred cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence 44555554321 01222333332 2222 2355 4577777544332 2346677889
Q ss_pred cCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhh-cCC
Q 001407 143 NGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSL-CLK 196 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L-~~~ 196 (1083)
.--+.+.-..||.++...+. + ..++.+|.+...|.-+.=..+|..| ..+
T Consensus 368 gyCtf~~fK~La~nYL~~~~-~----h~L~~eie~l~~~~~~tPA~V~e~lm~~~ 417 (457)
T KOG0743|consen 368 GYCTFEAFKTLASNYLGIEE-D----HRLFDEIERLIEETEVTPAQVAEELMKNK 417 (457)
T ss_pred CCCCHHHHHHHHHHhcCCCC-C----cchhHHHHHHhhcCccCHHHHHHHHhhcc
Confidence 99999999999988874332 2 2345555555555544444444444 444
No 224
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.34 E-value=0.0044 Score=58.67 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=30.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhccc-Cce-EEEEeeccc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEG-SCFVSDVRG 46 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~-~~~~~~~~~ 46 (1083)
.--|+|.||+|+||||+++++.+.++.+ |.. .+|..-+++
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 3458999999999999999999987765 654 444444543
No 225
>PRK04296 thymidine kinase; Provisional
Probab=96.29 E-value=0.01 Score=60.52 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=59.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc--cCC-CCchHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE--VAG-PNIPHFTKER 84 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~~~-~~~~~~~~~~ 84 (1083)
.++.|+|..|.||||+|..++.+...+...+.++... .... .+... +.+.++..... ... .++...+++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~--~d~~-~~~~~----i~~~lg~~~~~~~~~~~~~~~~~~~~- 74 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPA--IDDR-YGEGK----VVSRIGLSREAIPVSSDTDIFELIEE- 74 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEecc--cccc-ccCCc----EecCCCCcccceEeCChHHHHHHHHh-
Confidence 4788999999999999999999876554444444210 0011 11111 22222211110 111 111122222
Q ss_pred hcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh
Q 001407 85 VRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR 127 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~ 127 (1083)
..++.-+||+|.+.-. +++..+...+. ..|..||+|.++..
T Consensus 75 ~~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 75 EGEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred hCCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 2234568999998653 44555544432 46889999999844
No 226
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=96.25 E-value=0.018 Score=59.91 Aligned_cols=154 Identities=18% Similarity=0.128 Sum_probs=81.5
Q ss_pred EEEEecchhHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCH
Q 001407 119 IVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRK 198 (1083)
Q Consensus 119 IiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~ 198 (1083)
|=-|||.-.+..........+.+++.-+.+|-.+...+.|..-+. +-..+.+.+|+++..|-|--..-+-+..+
T Consensus 155 IGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i--~i~~~~a~eIA~rSRGTPRIAnRLLrRVR---- 228 (332)
T COG2255 155 IGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGI--EIDEEAALEIARRSRGTPRIANRLLRRVR---- 228 (332)
T ss_pred eeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCC--CCChHHHHHHHHhccCCcHHHHHHHHHHH----
Confidence 446898776665554335567888999999999999888732211 22345588999999999953322222221
Q ss_pred HHHHHHHHHHhhhcCcchhhHHhHhhhcccCCCccccceEEEEeecc--CCCChhHHHHHHhhh---hHhhhH-HHhhcc
Q 001407 199 SHWGKVLHDLNRICESEIHDIYDILKISFNKLTPRVKSIFLDIACFF--EGEDKDFVASILDDS---ESDVLD-ILIDKS 272 (1083)
Q Consensus 199 ~~w~~~l~~l~~~~~~~~~~i~~~l~~Sy~~L~~~~k~~fl~~a~f~--~~~~~~~~~~~l~~~---~~~~l~-~L~~~s 272 (1083)
++..+-.. ......-.+...+.|.+--.+|+...++.+..+.-.+ .+...+.+...+.+. .++.++ -|+..+
T Consensus 229 -Dfa~V~~~-~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~g 306 (332)
T COG2255 229 -DFAQVKGD-GDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQG 306 (332)
T ss_pred -HHHHHhcC-CcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhc
Confidence 11111000 0000000011344555555566665555444443333 234455555555433 222222 377888
Q ss_pred ceEEe-CCE
Q 001407 273 LVSIS-GNF 280 (1083)
Q Consensus 273 Li~~~-~~~ 280 (1083)
|++.. .||
T Consensus 307 fi~RTpRGR 315 (332)
T COG2255 307 FIQRTPRGR 315 (332)
T ss_pred hhhhCCCcc
Confidence 88776 444
No 227
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.23 E-value=0.071 Score=59.12 Aligned_cols=66 Identities=12% Similarity=0.166 Sum_probs=40.8
Q ss_pred EEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEecCCCHHHHHHHHHHh
Q 001407 91 LIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVNGLEFEEAFEHFCNF 157 (1083)
Q Consensus 91 LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~ 157 (1083)
.+|+|+++.. +....+...+.....+..+|++|.+.+ +..... .....+.+.+++.+++.+.+...
T Consensus 116 V~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 116 VILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred EEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhc
Confidence 4456877643 334444444433345676777777764 433322 14567899999999999888654
No 228
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.22 E-value=0.038 Score=56.41 Aligned_cols=149 Identities=21% Similarity=0.226 Sum_probs=86.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccccccCCCCchHHHHHH-
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLEVAGPNIPHFTKER- 84 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~~~~~~~~~~~~~~- 84 (1083)
++-|..+|++|.|||-+|++++++.+--|- -+. ..+++.+ .+.. ......+.++
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l---~vk---------------at~liGehVGdg------ar~Ihely~rA 206 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLL---LVK---------------ATELIGEHVGDG------ARRIHELYERA 206 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceE---Eec---------------hHHHHHHHhhhH------HHHHHHHHHHH
Confidence 678999999999999999999997643321 111 0111211 1111 1011222222
Q ss_pred hcCceeEEEEeCCCCh--------------HHHHHHhhccCCCC--CCcEEEEEecchhHHhhh-ccccccEEEecCCCH
Q 001407 85 VRRMKLLIVLDDVNEV--------------GQLKRLIGELDQFG--QGSRIVVTTRDKRVLEKF-RGEEKKIYRVNGLEF 147 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~--------------~~~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~-~~~~~~~~~v~~L~~ 147 (1083)
-+.-.+.+.+|.++.. +-+.+|+..+.... .|-.-|-.|...+++... .+....-++.+--++
T Consensus 207 ~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~ 286 (368)
T COG1223 207 RKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPND 286 (368)
T ss_pred HhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCCh
Confidence 2334788888876432 23566776665433 566666666666655433 222455678888899
Q ss_pred HHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCC
Q 001407 148 EEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 148 ~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~gl 182 (1083)
+|..+++..++-.-.-+-+.. .+.++.+.+|+
T Consensus 287 eEr~~ile~y~k~~Plpv~~~---~~~~~~~t~g~ 318 (368)
T COG1223 287 EERLEILEYYAKKFPLPVDAD---LRYLAAKTKGM 318 (368)
T ss_pred HHHHHHHHHHHHhCCCccccC---HHHHHHHhCCC
Confidence 999999999883322222111 45566666665
No 229
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.16 E-value=0.073 Score=53.51 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=25.1
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+++++-+.|.||+|+||||-+..+++.+-
T Consensus 45 ~gnmP~liisGpPG~GKTTsi~~LAr~LL 73 (333)
T KOG0991|consen 45 EGNMPNLIISGPPGTGKTTSILCLARELL 73 (333)
T ss_pred cCCCCceEeeCCCCCchhhHHHHHHHHHh
Confidence 46678889999999999999999998653
No 230
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.11 E-value=0.036 Score=55.57 Aligned_cols=114 Identities=20% Similarity=0.212 Sum_probs=61.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeecc--ccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVR--GNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~--~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
-.+++|.|..|.|||||++.+..-... ..+.+++.... -..+. ..+.. +....-.+.+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~i~~~~q~-~~LSg-----------------Gq~qrv~lara 85 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIP-NGDNDEWDGITPVYKPQY-IDLSG-----------------GELQRVAIAAA 85 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCC-CCcEEEECCEEEEEEccc-CCCCH-----------------HHHHHHHHHHH
Confidence 358999999999999999999875432 24445443210 00111 00000 00001234445
Q ss_pred hcCceeEEEEeCCC---ChHH---HHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEec
Q 001407 85 VRRMKLLIVLDDVN---EVGQ---LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 85 l~~kr~LlVlDdv~---~~~~---~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~ 143 (1083)
+..+.-++++|... |... +..+...+.. ..+..||++|.+....... .++++.+.
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~~~~tiiivsH~~~~~~~~---~d~i~~l~ 146 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSE-EGKKTALVVEHDLAVLDYL---SDRIHVFE 146 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHh---CCEEEEEc
Confidence 55667789999753 2222 2223322221 1236788888888776654 34555554
No 231
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.11 E-value=0.033 Score=56.34 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=66.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHH------HHHHHHhhhccc------cccCCC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHL------QKQMLSTTLSEK------LEVAGP 75 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l------~~~ll~~l~~~~------~~~~~~ 75 (1083)
.+++|.|..|.|||||++.++.... ...+.+++....- .. ...... ..+++..++-.. ...++.
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~~-~~~G~v~~~g~~~-~~--~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G 101 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLLK-PSSGEILLDGKDL-AS--LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG 101 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCcEEEECCEEC-Cc--CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence 5899999999999999999987543 3456666642210 00 111111 111233322111 001111
Q ss_pred C-chHHHHHHhcCceeEEEEeCCC---ChH---HHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 76 N-IPHFTKERVRRMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 76 ~-~~~~~~~~l~~kr~LlVlDdv~---~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
+ ..-.+.+.+-...-++++|... |.+ .+..+...+.. ..|..||++|.+.+..... .++++.+
T Consensus 102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~-~~~~tiii~sh~~~~~~~~---~d~~~~l 171 (180)
T cd03214 102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLAR-ERGKTVVMVLHDLNLAARY---ADRVILL 171 (180)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHh---CCEEEEE
Confidence 1 1123445566677899999753 222 23333333221 1267899999988766554 3455544
No 232
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.10 E-value=0.063 Score=67.58 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=69.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC------ceEEEEeecccccc-c--cCCHHHHHHHHHHhhhccccccCCCCch
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSE-T--AGGLEHLQKQMLSTTLSEKLEVAGPNIP 78 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~-~--~~~l~~l~~~ll~~l~~~~~~~~~~~~~ 78 (1083)
.-+.++|.+|+||||+|+.++.++.... ...+|..++..... . ...+..-.+
T Consensus 209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk------------------- 269 (852)
T TIGR03345 209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLK------------------- 269 (852)
T ss_pred CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHH-------------------
Confidence 3457999999999999999999764331 22334332221110 0 011111111
Q ss_pred HHHHHHh-cCceeEEEEeCCCChH-------HHH---HHhhccCCCCCCcEEEEEecchhHHhhhc-----cccccEEEe
Q 001407 79 HFTKERV-RRMKLLIVLDDVNEVG-------QLK---RLIGELDQFGQGSRIVVTTRDKRVLEKFR-----GEEKKIYRV 142 (1083)
Q Consensus 79 ~~~~~~l-~~kr~LlVlDdv~~~~-------~~~---~l~~~~~~~~~gsrIiiTTR~~~v~~~~~-----~~~~~~~~v 142 (1083)
..+.+.- .++++++++|++.... +.+ .|.+.+.. ..-++|-||...+...... ......++|
T Consensus 270 ~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v 347 (852)
T TIGR03345 270 SVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKV 347 (852)
T ss_pred HHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence 1122111 2467899999875431 222 24444322 1345666666533211110 013468999
Q ss_pred cCCCHHHHHHHHHHhh
Q 001407 143 NGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a 158 (1083)
+.++.+++.+++....
T Consensus 348 ~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 348 EEPDEETAIRMLRGLA 363 (852)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 9999999999975443
No 233
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=96.08 E-value=0.012 Score=66.50 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=28.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc--cCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH--EFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--~F~~~~~~~ 42 (1083)
.+.|.++|++|+|||++|+++++.+.. .|..+.|+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt 231 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ 231 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe
Confidence 356889999999999999999987643 455555655
No 234
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.07 E-value=0.052 Score=63.05 Aligned_cols=130 Identities=23% Similarity=0.312 Sum_probs=75.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceE----EEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGS----CFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHF 80 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~----~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~ 80 (1083)
...+=|.++|++|.|||++|+++++.-+..|-.+ .|-..+ ..-++..+++++...
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~v-------GeSEr~ir~iF~kAR-------------- 524 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYV-------GESERAIREVFRKAR-------------- 524 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhc-------CchHHHHHHHHHHHh--------------
Confidence 3467789999999999999999999877766543 111111 111223333332211
Q ss_pred HHHHhcCceeEEEEeCCCChH-------------HHHHHhhccCCCCCCcEEEE-E--ecchhHHhhh--ccccccEEEe
Q 001407 81 TKERVRRMKLLIVLDDVNEVG-------------QLKRLIGELDQFGQGSRIVV-T--TRDKRVLEKF--RGEEKKIYRV 142 (1083)
Q Consensus 81 ~~~~l~~kr~LlVlDdv~~~~-------------~~~~l~~~~~~~~~gsrIii-T--TR~~~v~~~~--~~~~~~~~~v 142 (1083)
+--...|.||.++... -+..|+..++-......|+| . -|...+-..+ .+..+..+-|
T Consensus 525 -----~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyV 599 (693)
T KOG0730|consen 525 -----QVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYV 599 (693)
T ss_pred -----hcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEee
Confidence 1224666677554321 25556666654444434444 2 2322222221 1247788889
Q ss_pred cCCCHHHHHHHHHHhhcC
Q 001407 143 NGLEFEEAFEHFCNFAFK 160 (1083)
Q Consensus 143 ~~L~~~ea~~Lf~~~a~~ 160 (1083)
+.-+.+..+++|+.++-+
T Consensus 600 plPD~~aR~~Ilk~~~kk 617 (693)
T KOG0730|consen 600 PLPDLEARLEILKQCAKK 617 (693)
T ss_pred cCccHHHHHHHHHHHHhc
Confidence 998999999999999844
No 235
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.03 E-value=0.036 Score=61.53 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=28.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
+.++|+++|++|+||||++.+++..+..+-..+.++.
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~ 276 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT 276 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4689999999999999999999987654433344443
No 236
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.02 E-value=0.003 Score=64.86 Aligned_cols=86 Identities=24% Similarity=0.264 Sum_probs=56.1
Q ss_pred cCCCCCcEEEeeCCCCcccccccccCCCCCcEEeccCC--cCcccCchhhhhccccCeeccCCCCCCCCCc--ccCCCCC
Q 001407 512 ECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGC--LNLEHFPEILEKMEHLKRIYSDRTPITELPS--SFENLPG 587 (1083)
Q Consensus 512 ~~l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~--~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~--~~~~l~~ 587 (1083)
-.+..|+.|++.++..+.. ..+-.|++|++|.++.| .....++.....+++|++|++++|++..+.. .+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3456677777777654332 22556888888888888 6666666666677888888888888774221 1345556
Q ss_pred CcEEeccCCCCC
Q 001407 588 LEVLFVEDCSKL 599 (1083)
Q Consensus 588 L~~L~l~~~~~~ 599 (1083)
|..|++.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 666666666543
No 237
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.99 E-value=0.024 Score=59.17 Aligned_cols=52 Identities=21% Similarity=0.368 Sum_probs=36.8
Q ss_pred HHHHHHhcCceeEEEEeC------CCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhh
Q 001407 79 HFTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKF 132 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDd------v~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~ 132 (1083)
-.+.+.|..+.=|+|||. +.....+-.++..+.. .|..|+++|.|-+.....
T Consensus 148 V~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~--eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 148 VLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQ--EGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred HHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHH--CCCEEEEEeCCcHHhHhh
Confidence 345566778888999993 3334446666666553 389999999998877665
No 238
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=95.98 E-value=0.03 Score=55.57 Aligned_cols=124 Identities=14% Similarity=0.213 Sum_probs=63.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC-chHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKERVR 86 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~~~~~l~ 86 (1083)
.+++|.|..|.|||||.+.++.... ...+.+++....-. . .......+. ....- ...++.+ ..-.+.+.+-
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~~-~~~G~v~~~g~~~~--~-~~~~~~~~~---~i~~~-~qLS~G~~qrl~laral~ 98 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLYK-PDSGEILVDGKEVS--F-ASPRDARRA---GIAMV-YQLSVGERQMVEIARALA 98 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEECC--c-CCHHHHHhc---CeEEE-EecCHHHHHHHHHHHHHh
Confidence 5799999999999999999987543 34556666432110 0 111111110 01000 0011111 1123444555
Q ss_pred CceeEEEEeCCC---ChHHHHHHhhccCCC-CCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 87 RMKLLIVLDDVN---EVGQLKRLIGELDQF-GQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 87 ~kr~LlVlDdv~---~~~~~~~l~~~~~~~-~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
.+.-++++|+.. |.+..+.+...+... ..|..||++|.+....... .++++.+
T Consensus 99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~---~d~~~~l 155 (163)
T cd03216 99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEI---ADRVTVL 155 (163)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh---CCEEEEE
Confidence 667788999753 222222222222211 3467799999988765544 3455544
No 239
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=95.97 E-value=0.041 Score=57.79 Aligned_cols=127 Identities=17% Similarity=0.254 Sum_probs=68.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
-+..++|||++|.|||-+|++|+.+.--.|-.++ ...-.+.......++.++++... -
T Consensus 165 ~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~---ss~lv~kyiGEsaRlIRemf~yA-------------------~ 222 (388)
T KOG0651|consen 165 PPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV---SSALVDKYIGESARLIRDMFRYA-------------------R 222 (388)
T ss_pred CCceeEEeCCCCCchhHHHHHHHHhcCCceEEee---HhhhhhhhcccHHHHHHHHHHHH-------------------h
Confidence 3578999999999999999999988755543211 00001111122223444333221 1
Q ss_pred cCceeEEEEeCCCCh-------------H---HHHHHhhccCCCC--CCcEEEEEecchhHHhhhc---cccccEEEecC
Q 001407 86 RRMKLLIVLDDVNEV-------------G---QLKRLIGELDQFG--QGSRIVVTTRDKRVLEKFR---GEEKKIYRVNG 144 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~-------------~---~~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~ 144 (1083)
...++.|.+|+++.. + .+-+|+..+.-+. ..-++|+||.+.+.+...- +.-++.|+.+-
T Consensus 223 ~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPl 302 (388)
T KOG0651|consen 223 EVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPL 302 (388)
T ss_pred hhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchhhcCCccccceeccCC
Confidence 123577788887431 1 1333444433333 4678999998886654321 22456677764
Q ss_pred CCHHHHHHHH
Q 001407 145 LEFEEAFEHF 154 (1083)
Q Consensus 145 L~~~ea~~Lf 154 (1083)
.++....+.+
T Consensus 303 pne~~r~~I~ 312 (388)
T KOG0651|consen 303 PNEQARLGIL 312 (388)
T ss_pred cchhhceeeE
Confidence 4443333333
No 240
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.1 Score=59.97 Aligned_cols=129 Identities=20% Similarity=0.283 Sum_probs=80.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCch-HHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKERVR 86 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~~~~~l~ 86 (1083)
.=|.+||++|.|||-||++|+++-.-.|-.+ . + -++......+.. ..+ ..+++.-.
T Consensus 546 sGvLL~GPPGCGKTLlAKAVANEag~NFisV------K-------G-PELlNkYVGESE---------rAVR~vFqRAR~ 602 (802)
T KOG0733|consen 546 SGVLLCGPPGCGKTLLAKAVANEAGANFISV------K-------G-PELLNKYVGESE---------RAVRQVFQRARA 602 (802)
T ss_pred CceEEeCCCCccHHHHHHHHhhhccCceEee------c-------C-HHHHHHHhhhHH---------HHHHHHHHHhhc
Confidence 3478999999999999999999876665322 1 1 123333332211 011 22333333
Q ss_pred CceeEEEEeCCCCh-------------HHHHHHhhccCCCC--CCcEEEEEecchhHHhhh---ccccccEEEecCCCHH
Q 001407 87 RMKLLIVLDDVNEV-------------GQLKRLIGELDQFG--QGSRIVVTTRDKRVLEKF---RGEEKKIYRVNGLEFE 148 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~---~~~~~~~~~v~~L~~~ 148 (1083)
...+.|.+|.++.. .-+..|+..+.-.. .|-.||-.|.-.++.... .+..+...-|+.-+.+
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~ 682 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAE 682 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHH
Confidence 45899999987532 12555666655332 466666666655544322 1346778889999999
Q ss_pred HHHHHHHHhhc
Q 001407 149 EAFEHFCNFAF 159 (1083)
Q Consensus 149 ea~~Lf~~~a~ 159 (1083)
|..++++..+-
T Consensus 683 eR~~ILK~~tk 693 (802)
T KOG0733|consen 683 ERVAILKTITK 693 (802)
T ss_pred HHHHHHHHHhc
Confidence 99999998874
No 241
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.94 E-value=0.026 Score=56.19 Aligned_cols=125 Identities=15% Similarity=0.193 Sum_probs=60.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeecc---ccccccC-CHHHHHHHHHHhhhccccccCCCC-chHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVR---GNSETAG-GLEHLQKQMLSTTLSEKLEVAGPN-IPHFTK 82 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~---~~~~~~~-~l~~l~~~ll~~l~~~~~~~~~~~-~~~~~~ 82 (1083)
.+++|.|..|.|||||++.++...... .+.+++...+ -..++.. .-..+.+.+.-. .....++.+ ..-.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~---~~~~LS~G~~~rv~la 103 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP---WDDVLSGGEQQRLAFA 103 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc---CCCCCCHHHHHHHHHH
Confidence 479999999999999999998754322 3333332100 0011100 001222222110 111111111 113344
Q ss_pred HHhcCceeEEEEeCCC---ChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 83 ERVRRMKLLIVLDDVN---EVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 83 ~~l~~kr~LlVlDdv~---~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
+.+..+.=++++|... |.+..+.+...+... +..||++|.+.+... . .++++.+
T Consensus 104 ral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~-~---~d~i~~l 160 (166)
T cd03223 104 RLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK-F---HDRVLDL 160 (166)
T ss_pred HHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh-h---CCEEEEE
Confidence 5556677788999643 222222222222222 466888888877653 3 4556555
No 242
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.92 E-value=0.028 Score=70.58 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
..++.++|++|+|||.+|++++..+.+
T Consensus 596 ~~~~lf~Gp~GvGKT~lA~~La~~l~~ 622 (852)
T TIGR03345 596 LGVFLLVGPSGVGKTETALALAELLYG 622 (852)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhC
Confidence 458899999999999999999987643
No 243
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.92 E-value=0.035 Score=66.55 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=23.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
..++++|+|++|+||||+|+.++..+.
T Consensus 109 ~~~illL~GP~GsGKTTl~~~la~~l~ 135 (637)
T TIGR00602 109 PKRILLITGPSGCGKSTTIKILSKELG 135 (637)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999998653
No 244
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.19 Score=51.01 Aligned_cols=130 Identities=18% Similarity=0.297 Sum_probs=75.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
+++=|.++|++|.|||-||+++++.. .+.|+. +++ .++.+....+- ....+.+.-..
T Consensus 180 QPKGvlLygppgtGktLlaraVahht-----~c~fir-vsg--------selvqk~igeg---------srmvrelfvma 236 (404)
T KOG0728|consen 180 QPKGVLLYGPPGTGKTLLARAVAHHT-----DCTFIR-VSG--------SELVQKYIGEG---------SRMVRELFVMA 236 (404)
T ss_pred CCcceEEecCCCCchhHHHHHHHhhc-----ceEEEE-ech--------HHHHHHHhhhh---------HHHHHHHHHHH
Confidence 45668899999999999999999743 233333 211 23333332221 00011111111
Q ss_pred -cCceeEEEEeCCCCh-------------H-H--HHHHhhccCCCC--CCcEEEEEecchhHHhhhc---cccccEEEec
Q 001407 86 -RRMKLLIVLDDVNEV-------------G-Q--LKRLIGELDQFG--QGSRIVVTTRDKRVLEKFR---GEEKKIYRVN 143 (1083)
Q Consensus 86 -~~kr~LlVlDdv~~~-------------~-~--~~~l~~~~~~~~--~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~ 143 (1083)
..-.-.|.+|.+++. + | .-+++..+.-|. ++-+||..|..-++....- +..++.++.+
T Consensus 237 rehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp 316 (404)
T KOG0728|consen 237 REHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFP 316 (404)
T ss_pred HhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCC
Confidence 123566777876432 1 1 223445554443 5678888887666654331 3467789999
Q ss_pred CCCHHHHHHHHHHhh
Q 001407 144 GLEFEEAFEHFCNFA 158 (1083)
Q Consensus 144 ~L~~~ea~~Lf~~~a 158 (1083)
+-+++...++++-|.
T Consensus 317 ~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 317 PPNEEARLDILKIHS 331 (404)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999988888887765
No 245
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.90 E-value=0.068 Score=67.76 Aligned_cols=94 Identities=20% Similarity=0.262 Sum_probs=50.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
..++.+.|+.|+|||++|+.++......-...+.+. +.+.... ... ..+. +.....-+.+....+.+.++
T Consensus 595 ~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d-~s~~~~~-~~~----~~l~----g~~~g~~g~~~~g~l~~~v~ 664 (852)
T TIGR03346 595 IGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRID-MSEYMEK-HSV----ARLI----GAPPGYVGYEEGGQLTEAVR 664 (852)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEe-chhhccc-chH----HHhc----CCCCCccCcccccHHHHHHH
Confidence 467889999999999999999987644333334333 3222211 111 1111 11111111111133444444
Q ss_pred Cc-eeEEEEeCCCCh--HHHHHHhhcc
Q 001407 87 RM-KLLIVLDDVNEV--GQLKRLIGEL 110 (1083)
Q Consensus 87 ~k-r~LlVlDdv~~~--~~~~~l~~~~ 110 (1083)
.+ ..+|+||+++.. +.++.|+..+
T Consensus 665 ~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 665 RKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred cCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 33 348899999754 3455555544
No 246
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=95.89 E-value=0.052 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+|.+.|++|.||||+|+.+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 689999999999999999987653
No 247
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.031 Score=55.18 Aligned_cols=122 Identities=21% Similarity=0.301 Sum_probs=66.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC-chHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN-IPHFTKERVR 86 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~-~~~~~~~~l~ 86 (1083)
.+++|.|..|.|||||++.+...+. ...+.+++....-. . .........+. -..+ ..+.+ ..-.+.+.+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~-~~~G~i~~~~~~~~-~--~~~~~~~~~i~-~~~q----lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLK-PTSGEILIDGKDIA-K--LPLEELRRRIG-YVPQ----LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCccEEEECCEEcc-c--CCHHHHHhceE-EEee----CCHHHHHHHHHHHHHh
Confidence 5899999999999999999988653 34566666532110 0 00111111100 0000 11111 1123445555
Q ss_pred CceeEEEEeCCC---ChH---HHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEec
Q 001407 87 RMKLLIVLDDVN---EVG---QLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 87 ~kr~LlVlDdv~---~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~ 143 (1083)
...-++++|... |.+ .+..+...+. ..+..|+++|.+.+..... .++++.+.
T Consensus 97 ~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~~~---~d~i~~l~ 154 (157)
T cd00267 97 LNPDLLLLDEPTSGLDPASRERLLELLRELA--EEGRTVIIVTHDPELAELA---ADRVIVLK 154 (157)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCHHHHHHh---CCEEEEEe
Confidence 667889999764 222 2333333322 2256799999988877665 35555553
No 248
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.84 E-value=0.082 Score=59.17 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=28.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccC--ceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF--EGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F--~~~~~~~ 42 (1083)
+-++++++|+.|+||||++.+++.+...++ ..+.++.
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit 174 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLT 174 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEe
Confidence 357999999999999999999998765443 3444443
No 249
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.84 E-value=0.044 Score=59.02 Aligned_cols=118 Identities=21% Similarity=0.267 Sum_probs=62.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHH-H--hcccCceEEEEeecccccccc--------CCHHHHHHHHHHhhhccc-cc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFD-Q--FSHEFEGSCFVSDVRGNSETA--------GGLEHLQKQMLSTTLSEK-LE 71 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~-~--~~~~F~~~~~~~~~~~~~~~~--------~~l~~l~~~ll~~l~~~~-~~ 71 (1083)
++++..|.+.|.+|.|||.||.+..- + .++.|...+-...+-...++- ..+....+.+...+..-. ..
T Consensus 242 d~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~ 321 (436)
T COG1875 242 DDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPN 321 (436)
T ss_pred CCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccc
Confidence 46789999999999999999988653 2 234454444322221111110 111222222222211100 00
Q ss_pred cCCCCchHHHHHH-------------hcCc---eeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecchh
Q 001407 72 VAGPNIPHFTKER-------------VRRM---KLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDKR 127 (1083)
Q Consensus 72 ~~~~~~~~~~~~~-------------l~~k---r~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~~ 127 (1083)
..+. ..+.+. .+++ +.+||+|...+.. ++..+... .|+||||+.|--..+
T Consensus 322 ~~~~---~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR---~G~GsKIVl~gd~aQ 389 (436)
T COG1875 322 EPGD---RALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR---AGEGSKIVLTGDPAQ 389 (436)
T ss_pred ccch---HHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh---ccCCCEEEEcCCHHH
Confidence 0111 222222 2232 4689999987654 55565554 689999999876433
No 250
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.83 E-value=0.059 Score=66.44 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=48.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
...+.++|++|+|||++|+.++..+... .+.+ ++.+.... ..+ ..++. ......+.+....+.+.++
T Consensus 488 ~~~~Lf~GP~GvGKT~lAk~LA~~l~~~---~i~i-d~se~~~~-~~~----~~LiG----~~~gyvg~~~~g~L~~~v~ 554 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRF-DMSEYMER-HTV----SRLIG----APPGYVGFDQGGLLTDAVI 554 (758)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCC---cEEe-echhhccc-ccH----HHHcC----CCCCcccccccchHHHHHH
Confidence 4578999999999999999999876322 2222 23222222 111 22221 1111111111234444444
Q ss_pred Cc-eeEEEEeCCCChH--HHHHHhhcc
Q 001407 87 RM-KLLIVLDDVNEVG--QLKRLIGEL 110 (1083)
Q Consensus 87 ~k-r~LlVlDdv~~~~--~~~~l~~~~ 110 (1083)
.+ .-+|+||+++... .++.++..+
T Consensus 555 ~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 555 KHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred hCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 44 4589999997653 355555444
No 251
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=95.82 E-value=0.029 Score=54.94 Aligned_cols=115 Identities=20% Similarity=0.227 Sum_probs=52.8
Q ss_pred EEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcCc--e
Q 001407 12 IWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRRM--K 89 (1083)
Q Consensus 12 I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~k--r 89 (1083)
|.|++|.||||+|++++.++ .|.....-..++........+....++.+.. ...++..-....+++++... .
T Consensus 1 i~G~PgsGK~t~~~~la~~~--~~~~is~~~llr~~~~~~s~~g~~i~~~l~~----g~~vp~~~v~~ll~~~l~~~~~~ 74 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRY--GLVHISVGDLLREEIKSDSELGKQIQEYLDN----GELVPDELVIELLKERLEQPPCN 74 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHH--TSEEEEHHHHHHHHHHTTSHHHHHHHHHHHT----TSS--HHHHHHHHHHHHHSGGTT
T ss_pred CcCCCCCChHHHHHHHHHhc--CcceechHHHHHHHHhhhhHHHHHHHHHHHh----hccchHHHHHHHHHHHHhhhccc
Confidence 68999999999999999875 2322211111111111101111111111111 11111111235555555433 4
Q ss_pred eEEEEeCC-CChHHHHHHhhcc--CCCCCCcEEEEEecchhHHhhh
Q 001407 90 LLIVLDDV-NEVGQLKRLIGEL--DQFGQGSRIVVTTRDKRVLEKF 132 (1083)
Q Consensus 90 ~LlVlDdv-~~~~~~~~l~~~~--~~~~~gsrIiiTTR~~~v~~~~ 132 (1083)
.-+|||++ .+.+|.+.+...+ ....+..-|.+.-.+..+...+
T Consensus 75 ~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~ 120 (151)
T PF00406_consen 75 RGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERL 120 (151)
T ss_dssp TEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHH
T ss_pred ceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhc
Confidence 56789998 4555666555422 1123444455555554444444
No 252
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=95.81 E-value=0.034 Score=62.56 Aligned_cols=111 Identities=12% Similarity=0.159 Sum_probs=66.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe-eccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS-DVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~-~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
-.+|.|.|+.|.||||+++.+...+.......++.. +-.+ .........................++..+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E---------~~~~~~~~~i~q~evg~~~~~~~~~l~~~l 192 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIE---------YVHRNKRSLINQREVGLDTLSFANALRAAL 192 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChh---------hhccCccceEEccccCCCCcCHHHHHHHhh
Confidence 468999999999999999999987765555555543 1111 000000000111111112233457778888
Q ss_pred cCceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHH
Q 001407 86 RRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVL 129 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~ 129 (1083)
+...=.|++|.+.+.+.+...... ...|-.++.|.-.....
T Consensus 193 r~~pd~i~vgEird~~~~~~~l~a---a~tGh~v~~T~Ha~~~~ 233 (343)
T TIGR01420 193 REDPDVILIGEMRDLETVELALTA---AETGHLVFGTLHTNSAA 233 (343)
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHH---HHcCCcEEEEEcCCCHH
Confidence 888889999999998877654443 23466555555544443
No 253
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.81 E-value=0.075 Score=52.07 Aligned_cols=53 Identities=11% Similarity=0.274 Sum_probs=36.7
Q ss_pred HHHHHHhcCceeEEEEe----CCCChHHHHHH--hhccCCCCCCcEEEEEecchhHHhhhc
Q 001407 79 HFTKERVRRMKLLIVLD----DVNEVGQLKRL--IGELDQFGQGSRIVVTTRDKRVLEKFR 133 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlD----dv~~~~~~~~l--~~~~~~~~~gsrIiiTTR~~~v~~~~~ 133 (1083)
-.+.+..-++.-+++-| |++..-.|+-+ ...+. ..|..||++|.+.++...+.
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeein--r~GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEIN--RLGTTVLMATHDLELVNRMR 204 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHh--hcCcEEEEEeccHHHHHhcc
Confidence 34556666778888999 45555555532 33332 46999999999999988874
No 254
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.79 E-value=0.034 Score=58.39 Aligned_cols=37 Identities=16% Similarity=0.287 Sum_probs=30.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-+++.|.|.+|+||||+|.+++.....+-..++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~ 54 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID 54 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 3578999999999999999999987655556677775
No 255
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.77 E-value=0.045 Score=57.81 Aligned_cols=37 Identities=24% Similarity=0.232 Sum_probs=29.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccC------ceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~ 42 (1083)
.-.++.|.|.+|.|||++|.+++....... ..++|+.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~ 60 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID 60 (226)
T ss_pred CCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence 357899999999999999999987654444 5677776
No 256
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.036 Score=66.11 Aligned_cols=136 Identities=21% Similarity=0.236 Sum_probs=80.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
...+.|.++|++|.|||.||+++++.....|-.+..- .+....+.+.. ..+...+...
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~--------------~l~sk~vGese--------k~ir~~F~~A 331 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS--------------ELLSKWVGESE--------KNIRELFEKA 331 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH--------------HHhccccchHH--------HHHHHHHHHH
Confidence 3456899999999999999999999765555433221 11111111110 0011333333
Q ss_pred hcCceeEEEEeCCCCh-------------HHHHHHhhccCCCCCCc--EEEEEecchhHHhhh-c--cccccEEEecCCC
Q 001407 85 VRRMKLLIVLDDVNEV-------------GQLKRLIGELDQFGQGS--RIVVTTRDKRVLEKF-R--GEEKKIYRVNGLE 146 (1083)
Q Consensus 85 l~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gs--rIiiTTR~~~v~~~~-~--~~~~~~~~v~~L~ 146 (1083)
.+.....|.+|.++.. ..+..++..+......+ .||-||-........ - +..+..+.++.-+
T Consensus 332 ~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd 411 (494)
T COG0464 332 RKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPD 411 (494)
T ss_pred HcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCC
Confidence 4566889999987432 22344444444333333 344455444433321 1 1367789999999
Q ss_pred HHHHHHHHHHhhcCCC
Q 001407 147 FEEAFEHFCNFAFKEN 162 (1083)
Q Consensus 147 ~~ea~~Lf~~~a~~~~ 162 (1083)
.++..+.|..+.-+..
T Consensus 412 ~~~r~~i~~~~~~~~~ 427 (494)
T COG0464 412 LEERLEIFKIHLRDKK 427 (494)
T ss_pred HHHHHHHHHHHhcccC
Confidence 9999999999885433
No 257
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.76 E-value=0.035 Score=67.02 Aligned_cols=98 Identities=23% Similarity=0.279 Sum_probs=61.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
....+....|+.|||||-||++++..+-+.=+.-+-+ ++++..++ +. .+.+-+.++..-+-+-...+-+.
T Consensus 519 rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~-DMSEy~Ek-Hs--------VSrLIGaPPGYVGyeeGG~LTEa 588 (786)
T COG0542 519 RPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRI-DMSEYMEK-HS--------VSRLIGAPPGYVGYEEGGQLTEA 588 (786)
T ss_pred CCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceee-chHHHHHH-HH--------HHHHhCCCCCCceeccccchhHh
Confidence 3467888999999999999999998664322333333 34444333 22 23333444443333334677777
Q ss_pred hcCcee-EEEEeCCCC--hHHHHHHhhccCC
Q 001407 85 VRRMKL-LIVLDDVNE--VGQLKRLIGELDQ 112 (1083)
Q Consensus 85 l~~kr~-LlVlDdv~~--~~~~~~l~~~~~~ 112 (1083)
.+++.| +|.||.|+. ++-++.++.-+..
T Consensus 589 VRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 589 VRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred hhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 888877 667899964 4556666666654
No 258
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.74 E-value=0.04 Score=69.59 Aligned_cols=127 Identities=17% Similarity=0.169 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc------CceEEEEeeccccccc---cCCHHHHHHHHHHhhhccccccCCCCchH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHE------FEGSCFVSDVRGNSET---AGGLEHLQKQMLSTTLSEKLEVAGPNIPH 79 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~~~~~~~~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~~~ 79 (1083)
-+.++|++|+|||++|+.++.++... -...+|..+....... ....++-.+ .
T Consensus 202 n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~-------------------~ 262 (821)
T CHL00095 202 NPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLK-------------------R 262 (821)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHH-------------------H
Confidence 45799999999999999999876421 1234454332111000 000011111 2
Q ss_pred HHHHHhcCceeEEEEeCCCChH---------HHH-HHhhccCCCCCCcEEEEEecchhHHhh------hccccccEEEec
Q 001407 80 FTKERVRRMKLLIVLDDVNEVG---------QLK-RLIGELDQFGQGSRIVVTTRDKRVLEK------FRGEEKKIYRVN 143 (1083)
Q Consensus 80 ~~~~~l~~kr~LlVlDdv~~~~---------~~~-~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~~~v~ 143 (1083)
.+.+.-..+++++++|++...- ... .|.+.+. .+ .-++|.+|...+.... +. .....++++
T Consensus 263 i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~-rg-~l~~IgaTt~~ey~~~ie~D~aL~-rRf~~I~v~ 339 (821)
T CHL00095 263 IFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA-RG-ELQCIGATTLDEYRKHIEKDPALE-RRFQPVYVG 339 (821)
T ss_pred HHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh-CC-CcEEEEeCCHHHHHHHHhcCHHHH-hcceEEecC
Confidence 2222223467899999984221 122 2333322 12 2455556655543221 11 134567889
Q ss_pred CCCHHHHHHHHHHh
Q 001407 144 GLEFEEAFEHFCNF 157 (1083)
Q Consensus 144 ~L~~~ea~~Lf~~~ 157 (1083)
..+.++...+++..
T Consensus 340 ep~~~e~~aILr~l 353 (821)
T CHL00095 340 EPSVEETIEILFGL 353 (821)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988887643
No 259
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.71 E-value=0.077 Score=52.70 Aligned_cols=80 Identities=9% Similarity=0.102 Sum_probs=48.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhcC-
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVRR- 87 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~~- 87 (1083)
++.|.|.+|.|||++|.++... ....++|+.-... .+ .++++.+......+.......+....+.+.+.+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~at~~~-----~d-~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~ 71 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIATAEA-----FD-DEMAERIARHRKRRPAHWRTIETPRDLVSALKEL 71 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEEccCc-----CC-HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhc
Confidence 4689999999999999999865 2346667742211 22 245555555444444444444444455555532
Q ss_pred -ceeEEEEeCC
Q 001407 88 -MKLLIVLDDV 97 (1083)
Q Consensus 88 -kr~LlVlDdv 97 (1083)
+.-.|++|.+
T Consensus 72 ~~~~~VLIDcl 82 (169)
T cd00544 72 DPGDVVLIDCL 82 (169)
T ss_pred CCCCEEEEEcH
Confidence 2337899975
No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.71 E-value=0.043 Score=61.84 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=30.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-.++.|.|.+|+|||||+.+++......-..++|+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs 117 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS 117 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999999987766555677775
No 261
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.69 E-value=0.034 Score=56.16 Aligned_cols=34 Identities=32% Similarity=0.451 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.+++|.|..|.|||||++.++.... ...+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~-~~~G~i~~~ 60 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLEE-PDSGSILID 60 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-CCceEEEEC
Confidence 5899999999999999999986542 345555554
No 262
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=95.67 E-value=0.085 Score=52.16 Aligned_cols=120 Identities=14% Similarity=0.235 Sum_probs=64.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc--------------------cCceEEEEeeccccccccCCHHHHHHHHHHhhh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH--------------------EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL 66 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--------------------~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~ 66 (1083)
...+.++|+.|+||+++|..++..+-. ......|+..... ... -.++++. ++...+.
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~-~~~-i~i~~ir-~i~~~~~ 95 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKK-KKS-IKIDQIR-EIIEFLS 95 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTS-SSS-BSHHHHH-HHHHHCT
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecccc-cch-hhHHHHH-HHHHHHH
Confidence 346789999999999999999985421 1222333321100 000 1222222 2222221
Q ss_pred ccccccCCCCchHHHHHHhcCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccccEEEec
Q 001407 67 SEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~~~~~v~ 143 (1083)
... ..+++-.+|+||++.. +...+|+..+.....++++|++|++.+ +.....+ ....+.++
T Consensus 96 ~~~---------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~S-Rc~~i~~~ 159 (162)
T PF13177_consen 96 LSP---------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRS-RCQVIRFR 159 (162)
T ss_dssp SS----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHT-TSEEEEE-
T ss_pred HHH---------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHh-hceEEecC
Confidence 110 1233557889998764 457777777766677899999988775 4444332 34456665
Q ss_pred CC
Q 001407 144 GL 145 (1083)
Q Consensus 144 ~L 145 (1083)
++
T Consensus 160 ~l 161 (162)
T PF13177_consen 160 PL 161 (162)
T ss_dssp --
T ss_pred CC
Confidence 54
No 263
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.66 E-value=0.0018 Score=66.39 Aligned_cols=84 Identities=17% Similarity=0.107 Sum_probs=60.9
Q ss_pred ccccCeeccCCCCCCCCCcccCCCCCCcEEeccCCCCCccCCCCcCCCchhhhhhcccccccCCCc--hhhcccCccEEE
Q 001407 562 MEHLKRIYSDRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPS--SVALSNMLRSLD 639 (1083)
Q Consensus 562 l~~L~~L~l~~~~l~~lp~~~~~l~~L~~L~l~~~~~~~~~p~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~ 639 (1083)
+.+.++|+..|+.+..+.- ...++.|+.|.|+-|++...- .+..+++|++|+|..|.|..+.. .+.++++|+.|.
T Consensus 18 l~~vkKLNcwg~~L~DIsi-c~kMp~lEVLsLSvNkIssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDISI-CEKMPLLEVLSLSVNKISSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHhhhhcccCCCccHHHH-HHhcccceeEEeeccccccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4556677777777775542 456888888888888776543 36788999999999999887753 356777888888
Q ss_pred cCCCCCCCC
Q 001407 640 SSHCKGLES 648 (1083)
Q Consensus 640 l~~~~~~~~ 648 (1083)
|..|.-.+.
T Consensus 95 L~ENPCc~~ 103 (388)
T KOG2123|consen 95 LDENPCCGE 103 (388)
T ss_pred hccCCcccc
Confidence 877764443
No 264
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.65 E-value=0.042 Score=55.23 Aligned_cols=124 Identities=20% Similarity=0.248 Sum_probs=63.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc-----------cCCCC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-----------VAGPN 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-----------~~~~~ 76 (1083)
.+++|.|..|.|||||++.++.... ...+.+++....- .. .. ....+. ..-..+...- .++.+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~-~~~G~i~~~g~~~-~~--~~-~~~~~~-i~~~~q~~~~~~~~tv~~~~~LS~G~ 100 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLLK-PDSGEIKVLGKDI-KK--EP-EEVKRR-IGYLPEEPSLYENLTVRENLKLSGGM 100 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-CCCeEEEECCEEc-cc--ch-Hhhhcc-EEEEecCCccccCCcHHHHhhcCHHH
Confidence 5899999999999999999987543 2345555532110 00 00 000000 0000010000 00000
Q ss_pred -chHHHHHHhcCceeEEEEeCCCC------hHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 77 -IPHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 77 -~~~~~~~~l~~kr~LlVlDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
..-.+.+.+..+.-++++|+... .+.+..+...+. ..|..||++|.+.+..... .++++.+
T Consensus 101 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~--~~g~tiii~th~~~~~~~~---~d~i~~l 168 (173)
T cd03230 101 KQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK--KEGKTILLSSHILEEAERL---CDRVAIL 168 (173)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH--HCCCEEEEECCCHHHHHHh---CCEEEEE
Confidence 11234455666778999997532 223333333332 2367899999998876655 3455554
No 265
>PRK06762 hypothetical protein; Provisional
Probab=95.62 E-value=0.037 Score=55.16 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=22.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.++|.|.|++|.||||+|+++...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 266
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.56 E-value=0.0012 Score=78.96 Aligned_cols=83 Identities=24% Similarity=0.257 Sum_probs=42.3
Q ss_pred cccCccEEEcCCCCCCCCcCccc-ccCCCCccEEEecCCC-CCc--CchhccCCCCCcEEEeeCCCCc---ccchhhhCC
Q 001407 631 LSNMLRSLDSSHCKGLESFPRTF-LLGLSAMGLLHISDYA-VRE--IPQEIAYLSSLEILYLSGNNFE---SLPAIIKQM 703 (1083)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~-l~~--lp~~l~~l~~L~~L~Ls~n~l~---~lp~~l~~l 703 (1083)
.+++|+.|+++++...++..... ...+++|+.|.+.+|. +++ +-.....+++|++|+|++|... .+.....++
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c 320 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNC 320 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhC
Confidence 34666667766666443333322 2235666666666665 332 2233345666777777766442 123333445
Q ss_pred CCCCEeeccC
Q 001407 704 SQLRFIHLED 713 (1083)
Q Consensus 704 ~~L~~L~L~~ 713 (1083)
++|+.|.+..
T Consensus 321 ~~l~~l~~~~ 330 (482)
T KOG1947|consen 321 PNLRELKLLS 330 (482)
T ss_pred cchhhhhhhh
Confidence 5555544433
No 267
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.56 E-value=0.081 Score=53.43 Aligned_cols=34 Identities=21% Similarity=0.392 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.+++|.|..|.|||||++.++..... -.+.+++.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~ 62 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDLKP-QQGEITLD 62 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccCCC-CCCEEEEC
Confidence 47999999999999999999875432 23445543
No 268
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.56 E-value=0.017 Score=58.68 Aligned_cols=30 Identities=47% Similarity=0.648 Sum_probs=27.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
+.+.+|||-|.+|.||||+|++++..+...
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 568999999999999999999999988765
No 269
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.55 E-value=0.059 Score=54.71 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
||.|.|++|+||||+|++++.++
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~ 23 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENF 23 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999865
No 270
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.55 E-value=0.0091 Score=54.98 Aligned_cols=29 Identities=41% Similarity=0.542 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCceE
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFSHEFEGS 38 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~~~F~~~ 38 (1083)
|.|+|.+|+||||+|+.++..+...|..+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RI 30 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRI 30 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence 68999999999999999999888887654
No 271
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.54 E-value=0.058 Score=68.13 Aligned_cols=95 Identities=22% Similarity=0.271 Sum_probs=51.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
...+.++|+.|+|||+||+.++..+-..-...+.+ ++.+.... ..+..+ . +.....-+.+....+.+.++
T Consensus 539 ~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~-~~~~~l----~----g~~~gyvg~~~~~~l~~~~~ 608 (821)
T CHL00095 539 IASFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEK-HTVSKL----I----GSPPGYVGYNEGGQLTEAVR 608 (821)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-Echhcccc-ccHHHh----c----CCCCcccCcCccchHHHHHH
Confidence 35678999999999999999998764332333333 23332222 222221 1 11111111111234555565
Q ss_pred Cce-eEEEEeCCCCh--HHHHHHhhccC
Q 001407 87 RMK-LLIVLDDVNEV--GQLKRLIGELD 111 (1083)
Q Consensus 87 ~kr-~LlVlDdv~~~--~~~~~l~~~~~ 111 (1083)
.++ -+|+||+++.. +.++.|+..+.
T Consensus 609 ~~p~~VvllDeieka~~~v~~~Llq~le 636 (821)
T CHL00095 609 KKPYTVVLFDEIEKAHPDIFNLLLQILD 636 (821)
T ss_pred hCCCeEEEECChhhCCHHHHHHHHHHhc
Confidence 554 58889999754 34555555544
No 272
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=95.47 E-value=0.079 Score=66.51 Aligned_cols=29 Identities=34% Similarity=0.565 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
.+++.++|++|+|||++|+.++..+...|
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~ 375 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKF 375 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence 35799999999999999999999876554
No 273
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.47 E-value=0.071 Score=65.74 Aligned_cols=131 Identities=14% Similarity=0.151 Sum_probs=65.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc------CceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHE------FEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTK 82 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~------F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 82 (1083)
-+.++|.+|+|||++|+.++.++... .+..+|..+ +..+ +.. ....-........+.
T Consensus 209 n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~----------~~~l----laG---~~~~Ge~e~rl~~l~ 271 (758)
T PRK11034 209 NPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD----------IGSL----LAG---TKYRGDFEKRFKALL 271 (758)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc----------HHHH----hcc---cchhhhHHHHHHHHH
Confidence 35689999999999999999865322 122333211 1111 100 000000000011122
Q ss_pred HHh-cCceeEEEEeCCCCh----------HHHHHHhhccCCCCCCcEEEEEecchhHHhh------hccccccEEEecCC
Q 001407 83 ERV-RRMKLLIVLDDVNEV----------GQLKRLIGELDQFGQGSRIVVTTRDKRVLEK------FRGEEKKIYRVNGL 145 (1083)
Q Consensus 83 ~~l-~~kr~LlVlDdv~~~----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~------~~~~~~~~~~v~~L 145 (1083)
+.+ +.++.+|++|+++.. .+...++.++... ..-++|-+|...+..+. +.. ....++|+.+
T Consensus 272 ~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~-g~i~vIgATt~~E~~~~~~~D~AL~r-RFq~I~v~eP 349 (758)
T PRK11034 272 KQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS-GKIRVIGSTTYQEFSNIFEKDRALAR-RFQKIDITEP 349 (758)
T ss_pred HHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC-CCeEEEecCChHHHHHHhhccHHHHh-hCcEEEeCCC
Confidence 222 345679999998632 1222223222211 12345555544432111 111 3357999999
Q ss_pred CHHHHHHHHHHhh
Q 001407 146 EFEEAFEHFCNFA 158 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a 158 (1083)
+.+++.+++....
T Consensus 350 s~~~~~~IL~~~~ 362 (758)
T PRK11034 350 SIEETVQIINGLK 362 (758)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998654
No 274
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.42 E-value=0.012 Score=55.75 Aligned_cols=22 Identities=45% Similarity=0.797 Sum_probs=20.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
|+|.|++|+||||+|+++..+.
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999875
No 275
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.42 E-value=0.11 Score=52.14 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=20.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
.+++|.|+.|.|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 5899999999999999998863
No 276
>PRK10865 protein disaggregation chaperone; Provisional
Probab=95.41 E-value=0.096 Score=66.17 Aligned_cols=129 Identities=13% Similarity=0.135 Sum_probs=67.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC------ceEEEEeeccccccc---cCCHHHHHHHHHHhhhccccccCCCCch
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSET---AGGLEHLQKQMLSTTLSEKLEVAGPNIP 78 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~---~~~l~~l~~~ll~~l~~~~~~~~~~~~~ 78 (1083)
.-+.++|.+|+|||++|+.++.++.... ...+|..++...... ...+..-.+
T Consensus 200 ~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk------------------- 260 (857)
T PRK10865 200 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLK------------------- 260 (857)
T ss_pred CceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHH-------------------
Confidence 3567999999999999999999764321 233333322211000 001111111
Q ss_pred HHHHHHh-cCceeEEEEeCCCChH----------HHHHHhhccCCCCCCcEEEEEecchhHHh------hhccccccEEE
Q 001407 79 HFTKERV-RRMKLLIVLDDVNEVG----------QLKRLIGELDQFGQGSRIVVTTRDKRVLE------KFRGEEKKIYR 141 (1083)
Q Consensus 79 ~~~~~~l-~~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gsrIiiTTR~~~v~~------~~~~~~~~~~~ 141 (1083)
..+.+.. .++++++++|++.... .-+.|.+.+.. | .-++|-+|...+... .... ....+.
T Consensus 261 ~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~-g-~l~~IgaTt~~e~r~~~~~d~al~r-Rf~~i~ 337 (857)
T PRK10865 261 GVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR-G-ELHCVGATTLDEYRQYIEKDAALER-RFQKVF 337 (857)
T ss_pred HHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-C-CCeEEEcCCCHHHHHHhhhcHHHHh-hCCEEE
Confidence 1222211 2468999999986432 12233333321 1 345555555544311 1111 233567
Q ss_pred ecCCCHHHHHHHHHHhh
Q 001407 142 VNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 142 v~~L~~~ea~~Lf~~~a 158 (1083)
+...+.++..++++...
T Consensus 338 v~eP~~~~~~~iL~~l~ 354 (857)
T PRK10865 338 VAEPSVEDTIAILRGLK 354 (857)
T ss_pred eCCCCHHHHHHHHHHHh
Confidence 88889999999887554
No 277
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.40 E-value=0.13 Score=50.61 Aligned_cols=119 Identities=14% Similarity=0.061 Sum_probs=59.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc--cCCC--------
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE--VAGP-------- 75 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~--~~~~-------- 75 (1083)
+..+|-|++..|.||||.|..++.+...+=-.++.+.-+.... . .+-....+.+.-........ ....
T Consensus 4 ~~Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~-~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~ 81 (173)
T TIGR00708 4 ERGIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-P-NGERAAFEPHGVEFQVMGTGFTWETQNREADTAI 81 (173)
T ss_pred cccEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-c-cChHHHHHhcCcEEEECCCCCeecCCCcHHHHHH
Confidence 3468889999999999999999887655433443332222211 1 12222222220000000000 0000
Q ss_pred --CchHHHHHHhcCce-eEEEEeCCCChH-----HHHHHhhccCCCCCCcEEEEEecch
Q 001407 76 --NIPHFTKERVRRMK-LLIVLDDVNEVG-----QLKRLIGELDQFGQGSRIVVTTRDK 126 (1083)
Q Consensus 76 --~~~~~~~~~l~~kr-~LlVlDdv~~~~-----~~~~l~~~~~~~~~gsrIiiTTR~~ 126 (1083)
+.....++.+...+ =|||||.+...- ..+.+...+....++.-||+|-|+.
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 01233444444444 499999773211 1223333333345677999999987
No 278
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=95.40 E-value=0.013 Score=60.10 Aligned_cols=26 Identities=46% Similarity=0.650 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
||||.|.+|.||||+|+++...+...
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~ 26 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKR 26 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 79999999999999999999987643
No 279
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.40 E-value=0.48 Score=49.33 Aligned_cols=193 Identities=15% Similarity=0.251 Sum_probs=108.3
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcc------cCceEEEEeecccc-------c-------cccCCH--HHHHHHH
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSH------EFEGSCFVSDVRGN-------S-------ETAGGL--EHLQKQM 61 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~------~F~~~~~~~~~~~~-------~-------~~~~~l--~~l~~~l 61 (1083)
.++..-..++|+.|.||-|.+..+.+++-+ +-+...|....... | +...|. ..+.+++
T Consensus 31 ~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQel 110 (351)
T KOG2035|consen 31 TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQEL 110 (351)
T ss_pred cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHH
Confidence 356778899999999999999988876432 34455555433220 0 000111 1233444
Q ss_pred HHhhhccccccCCCCchHHHHHHhcCcee-EEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchh-HHhhhccccc
Q 001407 62 LSTTLSEKLEVAGPNIPHFTKERVRRMKL-LIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKR-VLEKFRGEEK 137 (1083)
Q Consensus 62 l~~l~~~~~~~~~~~~~~~~~~~l~~kr~-LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~-v~~~~~~~~~ 137 (1083)
+.+..+...- .-. ..+.| ++|+-.+++. +.-.+|..........+|+|+...... +.....+ ..
T Consensus 111 lKevAQt~qi----------e~~-~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~RlIl~cns~SriIepIrS-RC 178 (351)
T KOG2035|consen 111 LKEVAQTQQI----------ETQ-GQRPFKVVVINEADELTRDAQHALRRTMEKYSSNCRLILVCNSTSRIIEPIRS-RC 178 (351)
T ss_pred HHHHHhhcch----------hhc-cccceEEEEEechHhhhHHHHHHHHHHHHHHhcCceEEEEecCcccchhHHhh-he
Confidence 4443322111 000 11122 4556555432 233445554444567888888655432 2222221 34
Q ss_pred cEEEecCCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCc-hhHHHHhhh-hcC-----C----CHHHHHHHHH
Q 001407 138 KIYRVNGLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNP-LVLEVLGSS-LCL-----K----RKSHWGKVLH 206 (1083)
Q Consensus 138 ~~~~v~~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glP-Lal~~l~~~-L~~-----~----~~~~w~~~l~ 206 (1083)
-.++++..+++|-...+++.+-++...-+ .+++.+|+++++|.- .||-++-.. +.+ . ...+|+-++.
T Consensus 179 l~iRvpaps~eeI~~vl~~v~~kE~l~lp--~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~ 256 (351)
T KOG2035|consen 179 LFIRVPAPSDEEITSVLSKVLKKEGLQLP--KELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQ 256 (351)
T ss_pred eEEeCCCCCHHHHHHHHHHHHHHhcccCc--HHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHHH
Confidence 56899999999999999988755554333 678999999999874 343332111 111 1 3468998888
Q ss_pred HHhh
Q 001407 207 DLNR 210 (1083)
Q Consensus 207 ~l~~ 210 (1083)
+...
T Consensus 257 e~a~ 260 (351)
T KOG2035|consen 257 EIAR 260 (351)
T ss_pred HHHH
Confidence 7654
No 280
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=95.38 E-value=0.089 Score=54.04 Aligned_cols=23 Identities=26% Similarity=0.150 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
++++|.|+.|.||||+.+.+...
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 79999999999999999999863
No 281
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.37 E-value=0.13 Score=51.72 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
++.+.|++|.||||+++.++..+...-..++.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 688999999999999999998776552334444
No 282
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.34 E-value=0.1 Score=52.40 Aligned_cols=124 Identities=19% Similarity=0.223 Sum_probs=62.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc---------cCCCC-c
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE---------VAGPN-I 77 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~~~~-~ 77 (1083)
.+++|.|..|.|||||++.++..... ..+.+++.... .. . .......+.+ .-..+...- .++.+ .
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~~~-~~G~i~~~g~~-~~-~-~~~~~~~~~i-~~~~q~~~~~~~tv~~~lLS~G~~q 103 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLLRP-TSGRVRLDGAD-IS-Q-WDPNELGDHV-GYLPQDDELFSGSIAENILSGGQRQ 103 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccCC-CCCeEEECCEE-cc-c-CCHHHHHhhe-EEECCCCccccCcHHHHCcCHHHHH
Confidence 47999999999999999999875432 34555553211 00 0 1111111110 000111000 00000 1
Q ss_pred hHHHHHHhcCceeEEEEeCCCC------hHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEe
Q 001407 78 PHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRV 142 (1083)
Q Consensus 78 ~~~~~~~l~~kr~LlVlDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v 142 (1083)
.-.+.+.+-.+.=++++|+... ..++..++..+. ..|..||++|.+.+... . .++++.+
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~--~~~~tii~~sh~~~~~~-~---~d~v~~l 168 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALK--AAGATRIVIAHRPETLA-S---ADRILVL 168 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHH--hCCCEEEEEeCCHHHHH-h---CCEEEEE
Confidence 1233344555667889997532 223333333332 24778999999887664 3 4555554
No 283
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.33 E-value=0.0075 Score=62.05 Aligned_cols=14 Identities=29% Similarity=0.114 Sum_probs=6.8
Q ss_pred cCCCCCcEEEeeCC
Q 001407 678 AYLSSLEILYLSGN 691 (1083)
Q Consensus 678 ~~l~~L~~L~Ls~n 691 (1083)
.-+++|++|+-...
T Consensus 140 ~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 140 LLLPSLKYLDGCDV 153 (260)
T ss_pred HHhhhhcccccccc
Confidence 34555555554333
No 284
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=95.32 E-value=0.71 Score=51.90 Aligned_cols=104 Identities=12% Similarity=0.017 Sum_probs=71.0
Q ss_pred ceeEEEEeCCCCh-----------HHHHHHhhccCCCCCCcEEEEEecchhHHhh----hccccccEEEecCCCHHHHHH
Q 001407 88 MKLLIVLDDVNEV-----------GQLKRLIGELDQFGQGSRIVVTTRDKRVLEK----FRGEEKKIYRVNGLEFEEAFE 152 (1083)
Q Consensus 88 kr~LlVlDdv~~~-----------~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~----~~~~~~~~~~v~~L~~~ea~~ 152 (1083)
+|=+||+||.... .+|...+.. .+=.+||++|-+....+. +...+.+.+.+...+.+.|.+
T Consensus 148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~----~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ----NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred cCCEEEEcchhccCcccchHHHHHHHHHHHHHh----cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 3678999998442 234443332 456789999988765553 323466778899999999999
Q ss_pred HHHHhhcCCCCC-------------C-----chhHHHHHHHHHhhCCCchhHHHHhhhhcC
Q 001407 153 HFCNFAFKENHC-------------P-----EDLNWHSRSVVSYTKGNPLVLEVLGSSLCL 195 (1083)
Q Consensus 153 Lf~~~a~~~~~~-------------~-----~~~~~l~~~i~~~~~glPLal~~l~~~L~~ 195 (1083)
+...+.-..... . .....-....++.+||--.-|..+++.++.
T Consensus 224 yV~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks 284 (431)
T PF10443_consen 224 YVLSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS 284 (431)
T ss_pred HHHHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 999887432110 0 123444677888899999999999988864
No 285
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.32 E-value=0.2 Score=60.32 Aligned_cols=154 Identities=20% Similarity=0.193 Sum_probs=89.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCch-HHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~~~~~l 85 (1083)
+|=|.++|++|.|||-||++++.+.. +=|+...+. ++.+..... +.... +.+...-
T Consensus 344 PkGvLL~GPPGTGKTLLAKAiAGEAg-----VPF~svSGS-------------EFvE~~~g~-----~asrvr~lf~~ar 400 (774)
T KOG0731|consen 344 PKGVLLVGPPGTGKTLLAKAIAGEAG-----VPFFSVSGS-------------EFVEMFVGV-----GASRVRDLFPLAR 400 (774)
T ss_pred cCceEEECCCCCcHHHHHHHHhcccC-----CceeeechH-------------HHHHHhccc-----chHHHHHHHHHhh
Confidence 45578999999999999999997632 223331111 111110000 00000 1122222
Q ss_pred cCceeEEEEeCCCC-----------------hHHHHHHhhccCCCCCCcE-EEE-EecchhHHhhh---ccccccEEEec
Q 001407 86 RRMKLLIVLDDVNE-----------------VGQLKRLIGELDQFGQGSR-IVV-TTRDKRVLEKF---RGEEKKIYRVN 143 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~-----------------~~~~~~l~~~~~~~~~gsr-Iii-TTR~~~v~~~~---~~~~~~~~~v~ 143 (1083)
......|.+|+++. ...+..++...+-+..+.. |++ +|+..++.... .+..++.+.+.
T Consensus 401 ~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~ 480 (774)
T KOG0731|consen 401 KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQID 480 (774)
T ss_pred ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceecc
Confidence 23355666665532 1226677777776664443 333 44444443322 13477889999
Q ss_pred CCCHHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhCCCchh
Q 001407 144 GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLV 185 (1083)
Q Consensus 144 ~L~~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPLa 185 (1083)
.-+.....++|..|+-..... .+..++++ ++...-|.+-|
T Consensus 481 ~p~~~~r~~i~~~h~~~~~~~-~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 481 LPDVKGRASILKVHLRKKKLD-DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred CCchhhhHHHHHHHhhccCCC-cchhhHHH-HHhcCCCCcHH
Confidence 999999999999998555443 45566677 89898888855
No 286
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.31 E-value=0.098 Score=53.85 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=40.0
Q ss_pred HHHHHHhcCceeEEEEeCC------CChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEec
Q 001407 79 HFTKERVRRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~ 143 (1083)
-++.+.+-...-+|+-|.- .+.+.+-.++..+.. ..|..||+.|.|..++..+ ++++.++
T Consensus 151 VAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~-~~g~tii~VTHd~~lA~~~----dr~i~l~ 216 (226)
T COG1136 151 VAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNK-ERGKTIIMVTHDPELAKYA----DRVIELK 216 (226)
T ss_pred HHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHH-hcCCEEEEEcCCHHHHHhC----CEEEEEe
Confidence 4556677778889999953 333444445544431 3578899999999999864 4666554
No 287
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=95.29 E-value=0.072 Score=56.55 Aligned_cols=91 Identities=19% Similarity=0.222 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc----ccCceEEEEeeccccccccCCHHHHHHHHHHhh-hccc-cccCCC-C----
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS----HEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEK-LEVAGP-N---- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~----~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~-~~~~~~-~---- 76 (1083)
+-++|.|-+|+|||+|+..+.++.. ++-+.++|+. +++.. ..+.++.+++...- .... .-.... +
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~-IGeR~---rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~ 145 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAA-MGITM---EDARFFKDDFEETGALERVVLFLNLANDPTIE 145 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEE-ecccc---HHHHHHHHHhhhcCCcceEEEEEecCCCCHHH
Confidence 4579999999999999999887653 2235566654 44332 34555666555441 1111 100110 0
Q ss_pred ------chHHHHHHh---cCceeEEEEeCCCChHH
Q 001407 77 ------IPHFTKERV---RRMKLLIVLDDVNEVGQ 102 (1083)
Q Consensus 77 ------~~~~~~~~l---~~kr~LlVlDdv~~~~~ 102 (1083)
..-.+.+++ .++++|+|+||+....+
T Consensus 146 r~~a~~~a~aiAEyfrd~~g~~VLl~~D~ltr~A~ 180 (276)
T cd01135 146 RIITPRMALTTAEYLAYEKGKHVLVILTDMTNYAE 180 (276)
T ss_pred HHHHHHHHHHHHHHHHhccCCeEEEEEcChhHHHH
Confidence 112233333 26899999999966544
No 288
>PRK08356 hypothetical protein; Provisional
Probab=95.27 E-value=0.096 Score=53.75 Aligned_cols=21 Identities=48% Similarity=0.491 Sum_probs=19.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIF 28 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~ 28 (1083)
.+|+|.|++|+||||+|+.+.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~ 26 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE 26 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999994
No 289
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=95.27 E-value=0.028 Score=54.38 Aligned_cols=36 Identities=25% Similarity=0.272 Sum_probs=29.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
..||-|.|.+|.||||||+++..++...-..+.++.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD 37 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD 37 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence 468999999999999999999999888766666664
No 290
>PRK14974 cell division protein FtsY; Provisional
Probab=95.26 E-value=0.15 Score=56.56 Aligned_cols=30 Identities=20% Similarity=0.272 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.+.++|+++|++|+||||++.+++..+..+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~ 167 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKN 167 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 357899999999999999999998876554
No 291
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=95.26 E-value=0.053 Score=56.45 Aligned_cols=36 Identities=19% Similarity=0.289 Sum_probs=31.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-+++.|+|.+|+|||++|.+++.....+-..++|+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~ 47 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID 47 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 579999999999999999999887666667888886
No 292
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=95.23 E-value=0.052 Score=62.12 Aligned_cols=91 Identities=19% Similarity=0.300 Sum_probs=52.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhh-hccccc-cCCCC---------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKLE-VAGPN--------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~~-~~~~~--------- 76 (1083)
+-++|.|.+|+|||||+..++.....+...++-+..+++.. ..+.++.+++...- ..+..- ....+
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~---rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a 221 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRV 221 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCc---HHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 56899999999999999998876554323333333444433 33455666655431 111110 01111
Q ss_pred --chHHHHHHh---cCceeEEEEeCCCChH
Q 001407 77 --IPHFTKERV---RRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 --~~~~~~~~l---~~kr~LlVlDdv~~~~ 101 (1083)
..-.+.+++ ++++||+++|++....
T Consensus 222 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A 251 (463)
T PRK09280 222 ALTGLTMAEYFRDVEGQDVLLFIDNIFRFT 251 (463)
T ss_pred HHHHHHHHHHHHHhcCCceEEEecchHHHH
Confidence 122344444 5689999999996544
No 293
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.22 E-value=0.1 Score=58.91 Aligned_cols=27 Identities=22% Similarity=0.338 Sum_probs=24.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
..++|.++|+.|+||||.+.+++..+.
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~ 199 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYG 199 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999998654
No 294
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=95.19 E-value=0.1 Score=53.47 Aligned_cols=52 Identities=19% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHhcCceeEEEEeCCCCh------HH-HHHHhhccCCCCCCcEEEEEecchhHHhhhc
Q 001407 80 FTKERVRRMKLLIVLDDVNEV------GQ-LKRLIGELDQFGQGSRIVVTTRDKRVLEKFR 133 (1083)
Q Consensus 80 ~~~~~l~~kr~LlVlDdv~~~------~~-~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~ 133 (1083)
++.+.|.-+.-++|+|..-+. .+ |+-+.. +. ...|-.+|+.|.|..++..+.
T Consensus 151 aIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~-l~-~~~~lt~l~IsHdl~~v~~~c 209 (252)
T COG1124 151 AIARALIPEPKLLILDEPTSALDVSVQAQILNLLLE-LK-KERGLTYLFISHDLALVEHMC 209 (252)
T ss_pred HHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHH-HH-HhcCceEEEEeCcHHHHHHHh
Confidence 455667777789999975332 22 333222 22 134667899999998887774
No 295
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.19 E-value=0.1 Score=53.85 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.+++|.|..|.|||||++.+.....
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcccCC
Confidence 5899999999999999999987553
No 296
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=95.19 E-value=0.11 Score=65.97 Aligned_cols=133 Identities=11% Similarity=0.106 Sum_probs=67.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC------ceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF------EGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFT 81 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F------~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~ 81 (1083)
.-+.++|.+|+|||++|+.++.++...+ ...+|..++...-..........+ .+...+
T Consensus 195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~----------------~l~~~l 258 (852)
T TIGR03346 195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEE----------------RLKAVL 258 (852)
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHH----------------HHHHHH
Confidence 4566899999999999999999764431 233443322110000000000000 000222
Q ss_pred HHHhc-CceeEEEEeCCCChH----------HHHHHhhccCCCCCCcEEEEEecchhHHhhhc-----cccccEEEecCC
Q 001407 82 KERVR-RMKLLIVLDDVNEVG----------QLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR-----GEEKKIYRVNGL 145 (1083)
Q Consensus 82 ~~~l~-~kr~LlVlDdv~~~~----------~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~-----~~~~~~~~v~~L 145 (1083)
.+.-+ +++++|++|++.... ..+.|.+.+. .+ .-++|-+|...+...... ......+.|+..
T Consensus 259 ~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~-~g-~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p 336 (852)
T TIGR03346 259 NEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALA-RG-ELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEP 336 (852)
T ss_pred HHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhh-cC-ceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCC
Confidence 22212 358999999986432 1223333321 12 234555555443311110 013356789999
Q ss_pred CHHHHHHHHHHhh
Q 001407 146 EFEEAFEHFCNFA 158 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a 158 (1083)
+.++..+++....
T Consensus 337 ~~~~~~~iL~~~~ 349 (852)
T TIGR03346 337 TVEDTISILRGLK 349 (852)
T ss_pred CHHHHHHHHHHHH
Confidence 9999999987654
No 297
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.18 E-value=0.077 Score=59.79 Aligned_cols=25 Identities=28% Similarity=0.335 Sum_probs=22.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.++|+++|++|+||||+|.+++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999999999754
No 298
>PTZ00301 uridine kinase; Provisional
Probab=95.18 E-value=0.018 Score=59.38 Aligned_cols=29 Identities=28% Similarity=0.552 Sum_probs=25.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
..+|||.|.+|.||||+|+++..++...+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~ 31 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHC 31 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhc
Confidence 57999999999999999999998775443
No 299
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=95.16 E-value=0.072 Score=62.76 Aligned_cols=54 Identities=19% Similarity=0.467 Sum_probs=37.4
Q ss_pred HHhcCceeEEEEe------CCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecC
Q 001407 83 ERVRRMKLLIVLD------DVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNG 144 (1083)
Q Consensus 83 ~~l~~kr~LlVlD------dv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~ 144 (1083)
..+-.+.=++||| |++..++++..+..+ +|+ ||+.|.|+...... ..+++.+.+
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gt-vl~VSHDr~Fl~~v---a~~i~~~~~ 511 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGT-VLLVSHDRYFLDRV---ATRIWLVED 511 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCe-EEEEeCCHHHHHhh---cceEEEEcC
Confidence 3445567799999 445555555555443 254 89999999999887 567777765
No 300
>PRK06696 uridine kinase; Validated
Probab=95.15 E-value=0.027 Score=59.23 Aligned_cols=31 Identities=26% Similarity=0.303 Sum_probs=27.0
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.+.+.+|+|.|.+|.||||+|+++...+...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~ 49 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKR 49 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999999999877543
No 301
>PRK05480 uridine/cytidine kinase; Provisional
Probab=95.15 E-value=0.02 Score=59.63 Aligned_cols=28 Identities=39% Similarity=0.633 Sum_probs=25.2
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+.+..+|+|.|.+|+||||||+.++..+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3567899999999999999999999876
No 302
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=95.13 E-value=0.057 Score=56.95 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-.++.|+|.+|+|||++|.+++......-..++|+.
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~ 58 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID 58 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 468999999999999999999987655667788886
No 303
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.12 E-value=0.058 Score=57.85 Aligned_cols=26 Identities=27% Similarity=0.598 Sum_probs=22.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
+|.+.|++|.||||+|+++.......
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~ 26 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEK 26 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 47899999999999999999876543
No 304
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.11 E-value=0.078 Score=56.56 Aligned_cols=24 Identities=42% Similarity=0.731 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|+|..|+|||||++.++...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 305
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=95.11 E-value=0.083 Score=56.71 Aligned_cols=120 Identities=16% Similarity=0.131 Sum_probs=67.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc-----cCCCCchH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE-----VAGPNIPH 79 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~-----~~~~~~~~ 79 (1083)
.+.+-++|+|..|.||||+.+.++..++.. .+.+++.... .... ....++...+ ....+.... .+...-..
T Consensus 109 ~~~~~~~i~g~~g~GKttl~~~l~~~~~~~-~G~i~~~g~~-v~~~-d~~~ei~~~~-~~~~q~~~~~r~~v~~~~~k~~ 184 (270)
T TIGR02858 109 NRVLNTLIISPPQCGKTTLLRDLARILSTG-ISQLGLRGKK-VGIV-DERSEIAGCV-NGVPQHDVGIRTDVLDGCPKAE 184 (270)
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHhCccCCC-CceEEECCEE-eecc-hhHHHHHHHh-cccccccccccccccccchHHH
Confidence 345789999999999999999999876543 3444443111 0000 0111222111 111111110 01110011
Q ss_pred HHHHHhc-CceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEecchhHHhh
Q 001407 80 FTKERVR-RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 131 (1083)
Q Consensus 80 ~~~~~l~-~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~ 131 (1083)
.+...+. ...=++|+|.+...+.+..+...+. .|..||+||.+..+...
T Consensus 185 ~~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 185 GMMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred HHHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 2222222 4677899999988887777776653 47889999998766443
No 306
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.10 E-value=0.22 Score=49.93 Aligned_cols=116 Identities=19% Similarity=0.297 Sum_probs=59.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccc---------cCCCC-c
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLE---------VAGPN-I 77 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~---------~~~~~-~ 77 (1083)
.+++|.|..|.|||||++.++..... ..+.+++....- . . .......+.+ .-..+...- .++.+ .
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~~~-~~G~i~~~g~~~-~-~-~~~~~~~~~i-~~~~~~~~~~~~t~~e~lLS~G~~~ 103 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLYDP-TSGEILIDGVDL-R-D-LDLESLRKNI-AYVPQDPFLFSGTIRENILSGGQRQ 103 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC-CCCEEEECCEEh-h-h-cCHHHHHhhE-EEEcCCchhccchHHHHhhCHHHHH
Confidence 47899999999999999999885432 345555542110 0 0 0001110000 000000000 00000 0
Q ss_pred hHHHHHHhcCceeEEEEeCCCC------hHHHHHHhhccCCCCCCcEEEEEecchhHHhh
Q 001407 78 PHFTKERVRRMKLLIVLDDVNE------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK 131 (1083)
Q Consensus 78 ~~~~~~~l~~kr~LlVlDdv~~------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~ 131 (1083)
.-.+.+.+..+.-++++|.... .+.+..+...+. .+..||++|.+.+....
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~---~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALA---KGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhc---CCCEEEEEecCHHHHHh
Confidence 1223444556677999997532 233434444332 35778999988877654
No 307
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.11 Score=58.55 Aligned_cols=130 Identities=23% Similarity=0.269 Sum_probs=72.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCch-HHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIP-HFTKERV 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~-~~~~~~l 85 (1083)
++=|.++|++|.|||-||++++.+. ..-+|.. .+...++ ++-.. +...+ +.+...-
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA----~VPFF~~-sGSEFdE----------m~VGv--------GArRVRdLF~aAk 393 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEA----GVPFFYA-SGSEFDE----------MFVGV--------GARRVRDLFAAAK 393 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhccc----CCCeEec-cccchhh----------hhhcc--------cHHHHHHHHHHHH
Confidence 4568899999999999999999753 2233332 2211111 01000 00001 1222222
Q ss_pred cCceeEEEEeCCCCh-------------HHHHHHhhccCCCCCCcEEEE--EecchhHHhh-hc--cccccEEEecCCCH
Q 001407 86 RRMKLLIVLDDVNEV-------------GQLKRLIGELDQFGQGSRIVV--TTRDKRVLEK-FR--GEEKKIYRVNGLEF 147 (1083)
Q Consensus 86 ~~kr~LlVlDdv~~~-------------~~~~~l~~~~~~~~~gsrIii--TTR~~~v~~~-~~--~~~~~~~~v~~L~~ 147 (1083)
+.-.+.|.+|.++.. +.+..|+..++-|.++.-||| .|.-++.+.. .. +..+..+.|+.-+.
T Consensus 394 ~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv 473 (752)
T KOG0734|consen 394 ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDV 473 (752)
T ss_pred hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCc
Confidence 344789999977542 126667777776765544444 3333333332 21 34667777877777
Q ss_pred HHHHHHHHHhhc
Q 001407 148 EEAFEHFCNFAF 159 (1083)
Q Consensus 148 ~ea~~Lf~~~a~ 159 (1083)
.-..+++..|.-
T Consensus 474 ~GR~eIL~~yl~ 485 (752)
T KOG0734|consen 474 RGRTEILKLYLS 485 (752)
T ss_pred ccHHHHHHHHHh
Confidence 777777777753
No 308
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.01 E-value=0.069 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.515 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.|.|.|.+|.||||+|+++..++
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999973
No 309
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=95.01 E-value=0.07 Score=60.83 Aligned_cols=92 Identities=17% Similarity=0.300 Sum_probs=52.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhh-hcccc-ccCC-CC--------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKL-EVAG-PN-------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~-~~~~-~~-------- 76 (1083)
+-++|.|.+|+|||||+..+..........++-+..+++.. ..+.++.+++...- ..+.. -... .+
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~---rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a 220 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERT---REGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRV 220 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCc---hHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHH
Confidence 56899999999999999999886544333333333454433 33555666554431 11110 0001 10
Q ss_pred --chHHHHHHh---cCceeEEEEeCCCChHH
Q 001407 77 --IPHFTKERV---RRMKLLIVLDDVNEVGQ 102 (1083)
Q Consensus 77 --~~~~~~~~l---~~kr~LlVlDdv~~~~~ 102 (1083)
..-.+.+++ ++++||+|+||+....+
T Consensus 221 ~~~a~tiAEyfrd~~G~~VLll~DslTR~A~ 251 (461)
T TIGR01039 221 ALTGLTMAEYFRDEQGQDVLLFIDNIFRFTQ 251 (461)
T ss_pred HHHHHHHHHHHHHhcCCeeEEEecchhHHHH
Confidence 122333444 46799999999966543
No 310
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.01 E-value=0.16 Score=58.56 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=27.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc--ccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS--HEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~ 42 (1083)
-++|+++|++|+||||++.+++.... ..-..+.++.
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~ 258 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT 258 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 46999999999999999999988664 3334455554
No 311
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.12 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.526 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||++.++..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 312
>PRK08233 hypothetical protein; Provisional
Probab=94.98 E-value=0.021 Score=57.98 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=23.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
..+|+|.|.+|.||||+|++++..+.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57999999999999999999998754
No 313
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.98 E-value=0.022 Score=47.11 Aligned_cols=23 Identities=43% Similarity=0.654 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|+|.|..|.||||+|+++...+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999885
No 314
>PRK04040 adenylate kinase; Provisional
Probab=94.97 E-value=0.028 Score=57.10 Aligned_cols=26 Identities=27% Similarity=0.584 Sum_probs=23.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.++|+|+|++|+||||+++.+..++.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 36899999999999999999999874
No 315
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=94.97 E-value=0.07 Score=61.32 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=52.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhh-hcccc-ccCCCC--------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKL-EVAGPN-------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~-~~~~~~-------- 76 (1083)
+-++|.|.+|+|||||+.+++..... +-+.++|. .+++.. ..+.++.+.+...- ..+.. -....+
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~-liGER~---rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~ 219 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFA-GVGERS---REGHELYHEMKESGVLDKTVMVYGQMNEPPGARMR 219 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEE-cCCcch---HHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHH
Confidence 56899999999999999999886643 34555554 344433 33445555554431 11111 011111
Q ss_pred ---chHHHHHHh---cCceeEEEEeCCCChH
Q 001407 77 ---IPHFTKERV---RRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 ---~~~~~~~~l---~~kr~LlVlDdv~~~~ 101 (1083)
..-.+.+++ +++++|+++||+....
T Consensus 220 a~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 250 (461)
T PRK12597 220 VVLTGLTIAEYLRDEEKEDVLLFIDNIFRFV 250 (461)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEeccchHHH
Confidence 112333444 3789999999996544
No 316
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.078 Score=62.33 Aligned_cols=138 Identities=20% Similarity=0.284 Sum_probs=72.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-.+++++|++|||||+||+.++.-+.+.|-... +-.++..++- .|- .....+.....+.+.+++ .+
T Consensus 350 GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s-LGGvrDEAEI-RGH-----------RRTYIGamPGrIiQ~mkk-a~ 415 (782)
T COG0466 350 GPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS-LGGVRDEAEI-RGH-----------RRTYIGAMPGKIIQGMKK-AG 415 (782)
T ss_pred CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe-cCccccHHHh-ccc-----------cccccccCChHHHHHHHH-hC
Confidence 369999999999999999999998877765332 2222222211 000 000011111111122221 23
Q ss_pred CceeEEEEeCCCChHH----------HHHHhhccCC--------CC-CCcEEEE-Eecch-h-HHhhhccccccEEEecC
Q 001407 87 RMKLLIVLDDVNEVGQ----------LKRLIGELDQ--------FG-QGSRIVV-TTRDK-R-VLEKFRGEEKKIYRVNG 144 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~----------~~~l~~~~~~--------~~-~gsrIii-TTR~~-~-v~~~~~~~~~~~~~v~~ 144 (1083)
.+.=+++||.++.... ++.|-+..+. .. .=|.|++ ||-+. + +-... .+...++++.+
T Consensus 416 ~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PL-lDRMEiI~lsg 494 (782)
T COG0466 416 VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPL-LDRMEVIRLSG 494 (782)
T ss_pred CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHH-hcceeeeeecC
Confidence 4567899998854221 2322222110 00 1244444 33322 2 21111 12557899999
Q ss_pred CCHHHHHHHHHHhhc
Q 001407 145 LEFEEAFEHFCNFAF 159 (1083)
Q Consensus 145 L~~~ea~~Lf~~~a~ 159 (1083)
-+++|-+++-.+|..
T Consensus 495 Yt~~EKl~IAk~~Li 509 (782)
T COG0466 495 YTEDEKLEIAKRHLI 509 (782)
T ss_pred CChHHHHHHHHHhcc
Confidence 999999988777753
No 317
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=94.95 E-value=0.036 Score=58.25 Aligned_cols=61 Identities=11% Similarity=0.295 Sum_probs=38.0
Q ss_pred HHHHHHhcCceeEEEEeCC------CChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEec
Q 001407 79 HFTKERVRRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN 143 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~ 143 (1083)
-.+.+.|.++.=+++||.- .+.-++-.+...+.. ..|..||+++.|-..|..+ .++.+-++
T Consensus 147 v~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~-~~~~tvv~vlHDlN~A~ry---ad~~i~lk 213 (258)
T COG1120 147 VLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNR-EKGLTVVMVLHDLNLAARY---ADHLILLK 213 (258)
T ss_pred HHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHH-hcCCEEEEEecCHHHHHHh---CCEEEEEE
Confidence 4455667777778899954 222222233333321 3577899999999888877 45555554
No 318
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.92 E-value=0.2 Score=55.62 Aligned_cols=38 Identities=24% Similarity=0.313 Sum_probs=29.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
...++|+++|+.|+||||++.+++.....+-..+.++.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt 241 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT 241 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34789999999999999999999987654434455554
No 319
>PRK07667 uridine kinase; Provisional
Probab=94.92 E-value=0.038 Score=56.57 Aligned_cols=30 Identities=30% Similarity=0.472 Sum_probs=25.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
+...+|||.|.+|.||||+|+.+...+...
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~ 44 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQE 44 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 455899999999999999999999876543
No 320
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.88 E-value=0.1 Score=60.76 Aligned_cols=36 Identities=31% Similarity=0.304 Sum_probs=29.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs 129 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS 129 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 468899999999999999999887655434577775
No 321
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.88 E-value=0.06 Score=61.86 Aligned_cols=37 Identities=27% Similarity=0.229 Sum_probs=28.8
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
..+.+|.++|.+|+||||+|.+++..++.+-..+..+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV 129 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV 129 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence 3578999999999999999999998776542233333
No 322
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.86 E-value=0.11 Score=55.07 Aligned_cols=37 Identities=16% Similarity=0.152 Sum_probs=29.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-.++.|+|.+|+|||++|.++......+-..++|+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~ 60 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT 60 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence 3578999999999999999999765434446677775
No 323
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=94.86 E-value=0.13 Score=53.18 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIF 28 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~ 28 (1083)
.+++|+|..|.|||||..+++
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~ 43 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALK 43 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 399999999999999999985
No 324
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.85 E-value=0.095 Score=54.07 Aligned_cols=23 Identities=39% Similarity=0.658 Sum_probs=21.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||++.++..
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999875
No 325
>PRK03839 putative kinase; Provisional
Probab=94.81 E-value=0.024 Score=57.43 Aligned_cols=24 Identities=38% Similarity=0.681 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.|.|.|++|+||||+|++++.+..
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~ 25 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG 25 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998764
No 326
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=94.81 E-value=0.046 Score=59.90 Aligned_cols=37 Identities=27% Similarity=0.301 Sum_probs=31.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId 90 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID 90 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence 3578999999999999999999887666666788886
No 327
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.80 E-value=0.21 Score=56.05 Aligned_cols=118 Identities=16% Similarity=0.226 Sum_probs=66.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccC---------------------ceEEEEeeccccccccCC---HHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEF---------------------EGSCFVSDVRGNSETAGG---LEHLQKQMLST 64 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F---------------------~~~~~~~~~~~~~~~~~~---l~~l~~~ll~~ 64 (1083)
-+.++|++|+||||+|.+++..+-... +.+..+.. +.. .. ..+..+++...
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~----s~~-~~~~i~~~~vr~~~~~ 100 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNP----SDL-RKIDIIVEQVRELAEF 100 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecc----ccc-CCCcchHHHHHHHHHH
Confidence 489999999999999999998764322 22222221 111 11 22333333322
Q ss_pred hhccccccCCCCchHHHHHHhcCceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEE
Q 001407 65 TLSEKLEVAGPNIPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYR 141 (1083)
Q Consensus 65 l~~~~~~~~~~~~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~ 141 (1083)
..... ..++.-++|+|+++... .-..+...+.......++|++|.+. .+.....+ ....++
T Consensus 101 ~~~~~---------------~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~S-Rc~~i~ 164 (325)
T COG0470 101 LSESP---------------LEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRS-RCQRIR 164 (325)
T ss_pred hccCC---------------CCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhh-cceeee
Confidence 11110 03456789999998654 3455665555556788888888844 34333321 345566
Q ss_pred ecCCCH
Q 001407 142 VNGLEF 147 (1083)
Q Consensus 142 v~~L~~ 147 (1083)
+++.+.
T Consensus 165 f~~~~~ 170 (325)
T COG0470 165 FKPPSR 170 (325)
T ss_pred cCCchH
Confidence 666333
No 328
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.79 E-value=0.019 Score=52.35 Aligned_cols=26 Identities=38% Similarity=0.611 Sum_probs=21.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
|-|+|.+|+|||++|+.++..+.+.+
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~ 26 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHI 26 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 46899999999999999998765443
No 329
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.77 E-value=0.066 Score=55.26 Aligned_cols=86 Identities=17% Similarity=0.385 Sum_probs=49.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccc-cccCCCC---------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEK-LEVAGPN--------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~-~~~~~~~--------- 76 (1083)
+-++|.|.+|+|||+|+..+.+.... +..+++. +++.. ..+.++.+++... ..... .-....+
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~~~--d~~V~~~-iGer~---~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~ 89 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQDA--DVVVYAL-IGERG---REVTEFIEELKGEGALERTVVVAATSDEPPAARYRA 89 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCTT--TEEEEEE-ESECH---HHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcccc--cceeeee-ccccc---hhHHHHHHHHhhcccccccccccccchhhHHHHhhh
Confidence 45899999999999999999987643 3335554 32222 3345555555443 11111 0011100
Q ss_pred ------chHHHHHHhcCceeEEEEeCCCChH
Q 001407 77 ------IPHFTKERVRRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 ------~~~~~~~~l~~kr~LlVlDdv~~~~ 101 (1083)
..+.+++ +++.+|+|+||+....
T Consensus 90 ~~~a~t~AEyfrd--~G~dVlli~Dsltr~a 118 (215)
T PF00006_consen 90 PYTALTIAEYFRD--QGKDVLLIIDSLTRWA 118 (215)
T ss_dssp HHHHHHHHHHHHH--TTSEEEEEEETHHHHH
T ss_pred hccchhhhHHHhh--cCCceeehhhhhHHHH
Confidence 1233333 6889999999985443
No 330
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.77 E-value=0.18 Score=54.94 Aligned_cols=36 Identities=17% Similarity=0.099 Sum_probs=28.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhccc-CceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~ 42 (1083)
-.++.|.|.+|+||||+|.+++.....+ -..++|+.
T Consensus 30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS 66 (271)
T cd01122 30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS 66 (271)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence 3588999999999999999998876444 45677775
No 331
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.76 E-value=0.14 Score=49.86 Aligned_cols=24 Identities=29% Similarity=0.591 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
||.|.|.+|.||||+|+.+...+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~ 24 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLF 24 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998764
No 332
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.76 E-value=0.03 Score=58.10 Aligned_cols=28 Identities=43% Similarity=0.648 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+...+|+|.|++|.||||||+.++..+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4568999999999999999999998654
No 333
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.76 E-value=0.085 Score=57.47 Aligned_cols=29 Identities=28% Similarity=0.418 Sum_probs=25.0
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
..++|+|+|++|+||||++.+++.....+
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 46799999999999999999999876543
No 334
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.75 E-value=0.098 Score=52.33 Aligned_cols=118 Identities=15% Similarity=0.070 Sum_probs=61.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhh----ccccccCCCC-----
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL----SEKLEVAGPN----- 76 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~----~~~~~~~~~~----- 76 (1083)
+...|-|+|..|-||||.|..++-+...+=-.+..+--+..... .+-....+.+ ..+. ...-.....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~ 97 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERNLLEFG-GGVEFHVMGTGFTWETQDRERDI 97 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHH
Confidence 35689999999999999999998876554444444433332211 1222222221 0100 0000000000
Q ss_pred -----chHHHHHHhcCc-eeEEEEeCCCChH-----HHHHHhhccCCCCCCcEEEEEecch
Q 001407 77 -----IPHFTKERVRRM-KLLIVLDDVNEVG-----QLKRLIGELDQFGQGSRIVVTTRDK 126 (1083)
Q Consensus 77 -----~~~~~~~~l~~k-r~LlVlDdv~~~~-----~~~~l~~~~~~~~~gsrIiiTTR~~ 126 (1083)
.....++.+... -=|||||.+...- ..+.+...+....++.-||+|-|+.
T Consensus 98 ~~~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 98 AAAREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 123344444443 4499999874321 1333333333345678999999987
No 335
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.73 E-value=0.0027 Score=65.17 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=59.2
Q ss_pred CCCCcEEEeeCCCCcccccccccCCCCCcEEeccCCcCcccCchhhhhccccCeeccCCCCCCCCCc--ccCCCCCCcEE
Q 001407 514 LTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEHLKRIYSDRTPITELPS--SFENLPGLEVL 591 (1083)
Q Consensus 514 l~~L~~L~L~~~~~~~~lp~~l~~l~~L~~L~L~~~~~~~~~p~~l~~l~~L~~L~l~~~~l~~lp~--~~~~l~~L~~L 591 (1083)
+.+.+.|++.+|.+ ..+.- ..+++.|+.|.|+-|.+... ..+..+++|++|+|..|.|..+.+ .+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L-~DIsi-c~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGL-DDISI-CEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCc-cHHHH-HHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 45566777777763 33221 34677888888887765543 346778888888888888887654 36778888888
Q ss_pred eccCCCCCccCC
Q 001407 592 FVEDCSKLDNLP 603 (1083)
Q Consensus 592 ~l~~~~~~~~~p 603 (1083)
.|..|+-.+.-+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 888877665544
No 336
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=94.68 E-value=0.086 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.598 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999999744
No 337
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=94.68 E-value=0.055 Score=59.25 Aligned_cols=37 Identities=27% Similarity=0.343 Sum_probs=30.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-+++-|+|++|+||||||.+++.....+-..++|+.
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId 90 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 90 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence 3479999999999999999999887655556677875
No 338
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.66 E-value=0.069 Score=57.37 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
..|.|+|.+|.||||+|+++...+...=..+.++
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i 35 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVII 35 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4689999999999999999998765532334444
No 339
>PRK00625 shikimate kinase; Provisional
Probab=94.66 E-value=0.028 Score=56.12 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.|.|+||+|+||||+|+.++.++.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~ 25 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS 25 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 488999999999999999998764
No 340
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=94.66 E-value=0.086 Score=59.18 Aligned_cols=104 Identities=18% Similarity=0.321 Sum_probs=58.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV 85 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l 85 (1083)
.++=+-|||..|.|||.|+-.+|+.+..+-..++-+. ..+.++.+.+-..- ...+....+.+.+
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh---------~Fm~~vh~~l~~~~-------~~~~~l~~va~~l 124 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH---------EFMLDVHSRLHQLR-------GQDDPLPQVADEL 124 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCcccccccccc---------HHHHHHHHHHHHHh-------CCCccHHHHHHHH
Confidence 4677889999999999999999996543211111111 11223333332221 1122235566677
Q ss_pred cCceeEEEEeCC--CChH---HHHHHhhccCCCCCCcEEEEEecchhH
Q 001407 86 RRMKLLIVLDDV--NEVG---QLKRLIGELDQFGQGSRIVVTTRDKRV 128 (1083)
Q Consensus 86 ~~kr~LlVlDdv--~~~~---~~~~l~~~~~~~~~gsrIiiTTR~~~v 128 (1083)
.++..||.+|.+ .|.. -+..|...+ +..|. |||+|-+..-
T Consensus 125 ~~~~~lLcfDEF~V~DiaDAmil~rLf~~l--~~~gv-vlVaTSN~~P 169 (362)
T PF03969_consen 125 AKESRLLCFDEFQVTDIADAMILKRLFEAL--FKRGV-VLVATSNRPP 169 (362)
T ss_pred HhcCCEEEEeeeeccchhHHHHHHHHHHHH--HHCCC-EEEecCCCCh
Confidence 777889999953 3443 355555544 23465 5666655543
No 341
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.65 E-value=0.13 Score=53.41 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=21.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
-.+++|.|..|.|||||++.++..
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 342
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=94.63 E-value=0.27 Score=52.32 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+..|+|++|+|||+||..++..+
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999998754
No 343
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.61 E-value=0.028 Score=56.22 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=23.7
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
-.+|+|-||-|+||||||+++++++.
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~ 29 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLG 29 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhC
Confidence 46899999999999999999998775
No 344
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=94.60 E-value=0.017 Score=58.82 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=20.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
.--|.++|.+|+|||+|+.++.+
T Consensus 6 ~~KivviG~~~vGKTsll~~~~~ 28 (189)
T cd04121 6 LLKFLLVGDSDVGKGEILASLQD 28 (189)
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 34567999999999999999986
No 345
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.59 E-value=0.16 Score=59.14 Aligned_cols=36 Identities=31% Similarity=0.291 Sum_probs=29.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-.++.|.|.+|+|||||+.+++.....+-..++|+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs 115 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS 115 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468999999999999999999987654445677775
No 346
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=94.58 E-value=0.15 Score=57.56 Aligned_cols=22 Identities=41% Similarity=0.691 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
-.++|+|+.|.||||||+.+..
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 3689999999999999999864
No 347
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=94.58 E-value=0.15 Score=53.56 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITGIL 50 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998743
No 348
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion]
Probab=94.58 E-value=0.068 Score=57.60 Aligned_cols=101 Identities=20% Similarity=0.378 Sum_probs=62.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccc-------cccCCCC----
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEK-------LEVAGPN---- 76 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~-------~~~~~~~---- 76 (1083)
-||+.|-+|+|||.+.+.+.+.+..+......+..+++...+ -.++..++... ...+. ...++.+
T Consensus 149 KiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFaGvGERtRE---GndLy~Em~es~vl~ktalv~gQMNEpPGaR~RVa 225 (468)
T COG0055 149 KIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTRE---GNDLYHEMKESGVLDKTALVFGQMNEPPGARMRVA 225 (468)
T ss_pred eeeeeccCCccceeeHHHHHHHHHHHcCCeEEEEeccccccc---hHHHHHHHHhcCCCCceeEEEeecCCCCcceeeeh
Confidence 489999999999999999999887776666666566654433 33555555544 11111 0112221
Q ss_pred -chHHHHHHh---cCceeEEEEeCCCChH----HHHHHhhccCC
Q 001407 77 -IPHFTKERV---RRMKLLIVLDDVNEVG----QLKRLIGELDQ 112 (1083)
Q Consensus 77 -~~~~~~~~l---~~kr~LlVlDdv~~~~----~~~~l~~~~~~ 112 (1083)
..-...+++ .++.+|+.+||+.... ++..+++..|.
T Consensus 226 ltGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PS 269 (468)
T COG0055 226 LTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPS 269 (468)
T ss_pred hhhhhHHHHhhcccCCeEEEEehhhhHHhhcchHHHHHhccCcc
Confidence 011222333 3568999999986544 36677777664
No 349
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.56 E-value=0.27 Score=51.34 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 26 EFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC
Confidence 589999999999999999998643
No 350
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.55 E-value=0.26 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=24.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.+.+|.++|.+|+||||.|.+++..+.
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 478999999999999999999988754
No 351
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.54 E-value=0.06 Score=53.62 Aligned_cols=41 Identities=27% Similarity=0.216 Sum_probs=31.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc-ccCceEEEEeeccccc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS-HEFEGSCFVSDVRGNS 48 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~~~~~~~ 48 (1083)
..++.+.|+.|+|||.+|++++..+. +.....+-+ ++.+.+
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~-d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRI-DMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEE-EGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHH-hhhccc
Confidence 46789999999999999999999876 555555544 344433
No 352
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.53 E-value=0.27 Score=51.45 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 353
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.51 E-value=0.062 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
|.|.|++|+||||+|+.++.++
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~~ 30 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKKE 30 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8899999999999999999865
No 354
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.49 E-value=0.16 Score=63.13 Aligned_cols=137 Identities=15% Similarity=0.238 Sum_probs=69.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
..++.++|++|+||||+|+.++......|-... +..++ +...+. ... ..........+.+.+.+. .
T Consensus 349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~-~~~~~-------d~~~i~----g~~-~~~~g~~~G~~~~~l~~~-~ 414 (784)
T PRK10787 349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA-LGGVR-------DEAEIR----GHR-RTYIGSMPGKLIQKMAKV-G 414 (784)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE-cCCCC-------CHHHhc----cch-hccCCCCCcHHHHHHHhc-C
Confidence 457999999999999999999987655543222 11111 111110 000 000000001111222221 1
Q ss_pred CceeEEEEeCCCChHH------HHHHhhccCC--------------CC-CCcEEEEEecchhHHhhhccccccEEEecCC
Q 001407 87 RMKLLIVLDDVNEVGQ------LKRLIGELDQ--------------FG-QGSRIVVTTRDKRVLEKFRGEEKKIYRVNGL 145 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~------~~~l~~~~~~--------------~~-~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L 145 (1083)
...-+++||.++.... .+.+...+.. +. .+.-+|.||....+-..... ...+++..++
T Consensus 415 ~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~-R~~ii~~~~~ 493 (784)
T PRK10787 415 VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLD-RMEVIRLSGY 493 (784)
T ss_pred CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhc-ceeeeecCCC
Confidence 2344788998854321 2344433321 01 23334445544443333322 3457899999
Q ss_pred CHHHHHHHHHHhh
Q 001407 146 EFEEAFEHFCNFA 158 (1083)
Q Consensus 146 ~~~ea~~Lf~~~a 158 (1083)
+++|-.++..++.
T Consensus 494 t~eek~~Ia~~~L 506 (784)
T PRK10787 494 TEDEKLNIAKRHL 506 (784)
T ss_pred CHHHHHHHHHHhh
Confidence 9999988887776
No 355
>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]
Probab=94.48 E-value=0.15 Score=64.52 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=96.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhccc----CceEEEEee--ccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHE----FEGSCFVSD--VRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTK 82 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~----F~~~~~~~~--~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~ 82 (1083)
-+.|+|-+|.||||....++-....+ =+..+|+.. ........... .+..-+......... .........
T Consensus 224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~-~~~~~l~~~~~~~~~---~~~~~~~~~ 299 (824)
T COG5635 224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQL-SLIDYLAEELFSQGI---AKQLIEAHQ 299 (824)
T ss_pred heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhc-cHHHHHHHHHhccCC---cchhhHHHH
Confidence 57899999999999999998743222 122333321 11111100000 122222222111111 111113335
Q ss_pred HHhcCceeEEEEeCCCChHH------HHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecCCCHHHHHHHHH-
Q 001407 83 ERVRRMKLLIVLDDVNEVGQ------LKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEAFEHFC- 155 (1083)
Q Consensus 83 ~~l~~kr~LlVlDdv~~~~~------~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~- 155 (1083)
+.++..++|+++|.++.... ...+-...+ .-+.+++|+|+|....-.... ....+++..+.++.-.+...
T Consensus 300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~-~~~~~~~iltcR~~~~~~~~~--~f~~~ei~~~~~~~i~~~~~~ 376 (824)
T COG5635 300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQ-EYPDAQVLLTCRPDTYKEEFK--GFAVFEIYKFLDLQINQFILY 376 (824)
T ss_pred HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhh-hccCCeEEEEeccchhhhhhh--hhhhccchhhhHHHHHHHHHH
Confidence 78899999999999876542 222222222 235889999999876554443 34456666666554332222
Q ss_pred -------HhhcCCCCCC--chhHHH---HHHHHHhhCCCchhHHHHhhhhc------CCCHHHHHHHHHHHhh
Q 001407 156 -------NFAFKENHCP--EDLNWH---SRSVVSYTKGNPLVLEVLGSSLC------LKRKSHWGKVLHDLNR 210 (1083)
Q Consensus 156 -------~~a~~~~~~~--~~~~~l---~~~i~~~~~glPLal~~l~~~L~------~~~~~~w~~~l~~l~~ 210 (1083)
...++..... .....+ ..+.++.....|++|.+.+..-. ....+-++.+++.+-.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ik~l~~~p~~L~l~c~~~~~~~~lP~~~~~ly~~~~~~~~~ 449 (824)
T COG5635 377 QWLDAFIEDWFGDSRLLAKKLLERLKLPENRRIKELALTPLLLALECLIWQAQGDLPESRAELYEQAVDALLG 449 (824)
T ss_pred HHHHHHHHhhhcccchhhHHHHHHhcchhhHHHHHhccCHHHHHHHHHhhhHHhhCCCCcHHHHHHHHHHHHh
Confidence 2222211111 001111 22333444777988888774332 2244556666655443
No 356
>PRK10867 signal recognition particle protein; Provisional
Probab=94.47 E-value=0.096 Score=60.05 Aligned_cols=30 Identities=23% Similarity=0.370 Sum_probs=25.6
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
....+|.++|.+|+||||+|.+++..++.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~ 127 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKK 127 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence 347899999999999999999998866555
No 357
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.46 E-value=0.033 Score=56.88 Aligned_cols=26 Identities=31% Similarity=0.456 Sum_probs=23.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
++++|+|.|++|+||||+|+.++..+
T Consensus 2 ~~~ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 2 KCKIIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999999764
No 358
>PRK06547 hypothetical protein; Provisional
Probab=94.45 E-value=0.041 Score=54.87 Aligned_cols=27 Identities=41% Similarity=0.347 Sum_probs=24.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
....+|+|.|++|.||||+|+.+....
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999999864
No 359
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.44 E-value=0.15 Score=53.61 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|+|..|.|||||++.++..
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 360
>PRK09354 recA recombinase A; Provisional
Probab=94.43 E-value=0.066 Score=59.15 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=31.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-+++-|+|++|+||||||.+++......-..++|+.
T Consensus 59 ~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId 95 (349)
T PRK09354 59 RGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID 95 (349)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence 3578999999999999999999887666667788886
No 361
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.42 E-value=0.0085 Score=71.57 Aligned_cols=16 Identities=13% Similarity=0.191 Sum_probs=8.7
Q ss_pred CCCCcEEEecCCcCcc
Q 001407 470 FVCPVTINFSYCVNLI 485 (1083)
Q Consensus 470 ~~~L~~l~l~~~~~l~ 485 (1083)
.+.|+.+.+.+|..+.
T Consensus 187 ~~~L~~l~l~~~~~~~ 202 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKIT 202 (482)
T ss_pred CchhhHhhhcccccCC
Confidence 3455566666665444
No 362
>CHL00206 ycf2 Ycf2; Provisional
Probab=94.40 E-value=0.18 Score=66.07 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.|=|.++|++|.|||.||++++.+..
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es~ 1655 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNSY 1655 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhcC
Confidence 56688999999999999999998643
No 363
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.40 E-value=0.11 Score=53.12 Aligned_cols=105 Identities=21% Similarity=0.259 Sum_probs=53.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHh-
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERV- 85 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l- 85 (1083)
-+++.|.|.+|.||||+++.+...+..+-..++++. .+......+.+. .......+ ...+...-
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a------pT~~Aa~~L~~~----~~~~a~Ti-----~~~l~~~~~ 82 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA------PTNKAAKELREK----TGIEAQTI-----HSFLYRIPN 82 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE------SSHHHHHHHHHH----HTS-EEEH-----HHHTTEECC
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC------CcHHHHHHHHHh----hCcchhhH-----HHHHhcCCc
Confidence 467889999999999999999886655533334432 110111222222 11111000 00000000
Q ss_pred --------cCceeEEEEeCCCCh--HHHHHHhhccCCCCCCcEEEEEecchhH
Q 001407 86 --------RRMKLLIVLDDVNEV--GQLKRLIGELDQFGQGSRIVVTTRDKRV 128 (1083)
Q Consensus 86 --------~~kr~LlVlDdv~~~--~~~~~l~~~~~~~~~gsrIiiTTR~~~v 128 (1083)
..++-+||+|++... .++..+..... ..|+|+|+.--..++
T Consensus 83 ~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~QL 133 (196)
T PF13604_consen 83 GDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPNQL 133 (196)
T ss_dssp EECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TTSH
T ss_pred ccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcchh
Confidence 223459999998654 45666666543 258898888765544
No 364
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.35 E-value=0.3 Score=50.80 Aligned_cols=23 Identities=26% Similarity=0.209 Sum_probs=21.2
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
.|++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 48999999999999999999874
No 365
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.32 E-value=0.16 Score=59.15 Aligned_cols=153 Identities=17% Similarity=0.237 Sum_probs=83.5
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHH
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKER 84 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~ 84 (1083)
..++-+.++|++|+|||-+|++|+++.. ..+|..+. ..+...+..+ ....+...+.+.
T Consensus 216 ~~prg~Ll~gppg~Gkt~l~~aVa~e~~----a~~~~i~~----------peli~k~~gE--------te~~LR~~f~~a 273 (693)
T KOG0730|consen 216 KPPRGLLLYGPPGTGKTFLVRAVANEYG----AFLFLING----------PELISKFPGE--------TESNLRKAFAEA 273 (693)
T ss_pred CCCCCccccCCCCCChHHHHHHHHHHhC----ceeEeccc----------HHHHHhcccc--------hHHHHHHHHHHH
Confidence 3467789999999999999999999764 23333321 1222222211 111122455555
Q ss_pred hcCc-eeEEEEeCCCChH------------HHHHHhhccCCCCCCcEE--EEEecchhHHhh-hc-cccccEEEecCCCH
Q 001407 85 VRRM-KLLIVLDDVNEVG------------QLKRLIGELDQFGQGSRI--VVTTRDKRVLEK-FR-GEEKKIYRVNGLEF 147 (1083)
Q Consensus 85 l~~k-r~LlVlDdv~~~~------------~~~~l~~~~~~~~~gsrI--iiTTR~~~v~~~-~~-~~~~~~~~v~~L~~ 147 (1083)
.+.+ +-.+.+|+++... -...+..-..+.++.+++ |-|||...-... .. +..++-+++.-.+.
T Consensus 274 ~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 274 LKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGRFDREVEIGIPGS 353 (693)
T ss_pred hccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCCCcceeeecCCCc
Confidence 5666 7777778664321 122233333334433333 335555433221 11 23677788999998
Q ss_pred HHHHHHHHHhhcCCCCC-CchhHHHHHHHHHhh
Q 001407 148 EEAFEHFCNFAFKENHC-PEDLNWHSRSVVSYT 179 (1083)
Q Consensus 148 ~ea~~Lf~~~a~~~~~~-~~~~~~l~~~i~~~~ 179 (1083)
.+..++++.+.-.-+.. ..+..+++.....+.
T Consensus 354 ~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyv 386 (693)
T KOG0730|consen 354 DGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYV 386 (693)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHccchh
Confidence 99999988876443333 234444444433333
No 366
>PRK12678 transcription termination factor Rho; Provisional
Probab=94.32 E-value=0.073 Score=61.50 Aligned_cols=92 Identities=17% Similarity=0.235 Sum_probs=50.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcc-cCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCC------CchHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSH-EFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP------NIPHF 80 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~-~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~------~~~~~ 80 (1083)
+-++|+|.+|+|||||++.+++.+.. +-+..+++..+.+-... +..+.+.+-.++.....+.+.. ...-.
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeE---Vtdm~rsVkgeVVasT~D~p~~~~~~~a~~ai~ 493 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEE---VTDMQRSVKGEVIASTFDRPPSDHTTVAELAIE 493 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhh---HHHHHHhccceEEEECCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999997643 23444455555544333 3333333211111111111000 01112
Q ss_pred HHHHh--cCceeEEEEeCCCChHH
Q 001407 81 TKERV--RRMKLLIVLDDVNEVGQ 102 (1083)
Q Consensus 81 ~~~~l--~~kr~LlVlDdv~~~~~ 102 (1083)
+-+++ .++.|||++|++.....
T Consensus 494 ~Ae~fre~G~dVlillDSlTR~Ar 517 (672)
T PRK12678 494 RAKRLVELGKDVVVLLDSITRLGR 517 (672)
T ss_pred HHHHHHHcCCCEEEEEeCchHHHH
Confidence 22333 57899999999865543
No 367
>PRK06217 hypothetical protein; Validated
Probab=94.31 E-value=0.17 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.|.|.|++|.||||+|+++...+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999875
No 368
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.30 E-value=0.061 Score=51.59 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=26.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
++|+|+|..|+|||||++.+.+.+..+--.++.+.
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik 35 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIK 35 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEE
Confidence 48999999999999999999998775543344333
No 369
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.29 E-value=0.22 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||.+.++...
T Consensus 36 e~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998754
No 370
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=94.27 E-value=0.26 Score=50.19 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCce
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEG 37 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~ 37 (1083)
-|.+||.-|+||++|++++.+.+.++.-.
T Consensus 87 nVLLwGaRGtGKSSLVKA~~~e~~~~glr 115 (287)
T COG2607 87 NVLLWGARGTGKSSLVKALLNEYADEGLR 115 (287)
T ss_pred ceEEecCCCCChHHHHHHHHHHHHhcCCe
Confidence 47899999999999999999998887665
No 371
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.26 E-value=0.16 Score=53.19 Aligned_cols=23 Identities=30% Similarity=0.540 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||++.++..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999864
No 372
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=94.24 E-value=0.15 Score=63.27 Aligned_cols=114 Identities=12% Similarity=0.085 Sum_probs=59.3
Q ss_pred CceeEEEEeCCCC---hHHHHH----HhhccCCCCCCcEEEEEecchhHHhhhcc-ccccEEEecCCCHHHHHHHHHHhh
Q 001407 87 RMKLLIVLDDVNE---VGQLKR----LIGELDQFGQGSRIVVTTRDKRVLEKFRG-EEKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 87 ~kr~LlVlDdv~~---~~~~~~----l~~~~~~~~~gsrIiiTTR~~~v~~~~~~-~~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..+-|+++|.+-. +..... +...+. ..|+.+|+||.+.++...... .....+.|. ++.+ .+. |..+
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~-~l~-p~Yk- 474 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEE-TLS-PTYK- 474 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCC-CCc-eEEE-
Confidence 4688999998743 222222 233322 358899999999887543321 011111221 1111 111 1111
Q ss_pred cCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHhh
Q 001407 159 FKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNR 210 (1083)
Q Consensus 159 ~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~~ 210 (1083)
+....+. ...|-+|++++ |+|-.+.--|..+.+....+++..++++..
T Consensus 475 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~L~~ 522 (771)
T TIGR01069 475 LLKGIPG---ESYAFEIAQRY-GIPHFIIEQAKTFYGEFKEEINVLIEKLSA 522 (771)
T ss_pred ECCCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1122222 22366777776 788887777777766555566666665543
No 373
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=94.23 E-value=0.23 Score=53.53 Aligned_cols=102 Identities=17% Similarity=0.152 Sum_probs=60.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-.+|.|.|..|.||||+++++...+...-..++.+.+-.+.. +..+ .+... ....+......++..++
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~-----~~~~-----~q~~v--~~~~~~~~~~~l~~~lR 147 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQ-----IPGI-----NQVQV--NEKAGLTFARGLRAILR 147 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceec-----CCCc-----eEEEe--CCcCCcCHHHHHHHHhc
Confidence 458999999999999999999887644223344554332211 1100 00000 01111234477788888
Q ss_pred CceeEEEEeCCCChHHHHHHhhccCCCCCCcEEEEEec
Q 001407 87 RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTR 124 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrIiiTTR 124 (1083)
...=.|+++.+.+.+....+.... ..|-. ++||=
T Consensus 148 ~~PD~i~vgEiR~~e~a~~~~~aa---~tGh~-v~tTl 181 (264)
T cd01129 148 QDPDIIMVGEIRDAETAEIAVQAA---LTGHL-VLSTL 181 (264)
T ss_pred cCCCEEEeccCCCHHHHHHHHHHH---HcCCc-EEEEe
Confidence 888899999999998765544442 23444 45554
No 374
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=94.19 E-value=0.052 Score=54.72 Aligned_cols=25 Identities=48% Similarity=0.662 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
+|+|.|.+|.||||+|+.+...+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987653
No 375
>PRK00131 aroK shikimate kinase; Reviewed
Probab=94.19 E-value=0.04 Score=55.41 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
...|.|.|++|.||||+|++++..+
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999876
No 376
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.18 E-value=0.29 Score=49.56 Aligned_cols=34 Identities=38% Similarity=0.536 Sum_probs=25.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.+++|.|..|.|||||++.++..... ..+.+++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~~~-~~G~i~~~ 60 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGLRPP-ASGEITLD 60 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCC-CCceEEEC
Confidence 47999999999999999999875432 23444443
No 377
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=94.18 E-value=0.19 Score=53.52 Aligned_cols=92 Identities=17% Similarity=0.256 Sum_probs=50.8
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhh-hcccc------ccCCCC---
Q 001407 8 QIVGIWGMGGIGKTTLA-KAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKL------EVAGPN--- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA-~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~------~~~~~~--- 76 (1083)
+-++|.|.+|+|||+|| ..+.++. +-+..+.+..+++.. ..+.++.+++...- ..+.. +.+...
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~~--~~~v~~V~~~iGer~---~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~ 144 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQK--GKKVYCIYVAIGQKA---STVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYL 144 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHhc--CCCeEEEEEecccch---HHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHH
Confidence 56899999999999996 5555543 234554444454433 33455666555431 11110 111100
Q ss_pred -------chHHHHHHhcCceeEEEEeCCCChHH-HHHH
Q 001407 77 -------IPHFTKERVRRMKLLIVLDDVNEVGQ-LKRL 106 (1083)
Q Consensus 77 -------~~~~~~~~l~~kr~LlVlDdv~~~~~-~~~l 106 (1083)
+.+.++. +++.+|+|+||+....+ +.++
T Consensus 145 a~~~a~aiAE~fr~--~G~~Vlvl~DslTr~A~A~rEi 180 (274)
T cd01132 145 APYTGCAMGEYFMD--NGKHALIIYDDLSKQAVAYRQM 180 (274)
T ss_pred HHHHHHHHHHHHHH--CCCCEEEEEcChHHHHHHHHHH
Confidence 1233322 47899999999976543 4443
No 378
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.17 E-value=0.22 Score=51.99 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=21.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||++.++..
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 47999999999999999999864
No 379
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.16 E-value=0.24 Score=50.34 Aligned_cols=57 Identities=18% Similarity=0.229 Sum_probs=35.4
Q ss_pred HHHHHhcCceeEEEEeCCCChHHHH------HHhhccCCCCCCcEEEEEecchhHHhhhccccccEE
Q 001407 80 FTKERVRRMKLLIVLDDVNEVGQLK------RLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIY 140 (1083)
Q Consensus 80 ~~~~~l~~kr~LlVlDdv~~~~~~~------~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~ 140 (1083)
.+.+.+--++-+.|||..++--+++ .....+. .+|+-++|.|....++.... .+.+|
T Consensus 154 EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~--pD~vh 216 (251)
T COG0396 154 EILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIK--PDKVH 216 (251)
T ss_pred HHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcC--CCEEE
Confidence 4444445567799999766543332 2222332 35777888899999988775 44444
No 380
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.16 E-value=0.071 Score=57.57 Aligned_cols=37 Identities=16% Similarity=0.328 Sum_probs=29.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
.+.++|+++|++|+||||++.+++..+..+-..+.++
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li 106 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLA 106 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4578999999999999999999998776553344444
No 381
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.15 E-value=0.18 Score=52.62 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
+++|.|..|.|||||++.++..
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCC
Confidence 8999999999999999999863
No 382
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.15 E-value=0.068 Score=53.83 Aligned_cols=36 Identities=25% Similarity=0.254 Sum_probs=27.3
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
...+|+|.|++|.||||+|++++......-....++
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i 38 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL 38 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 346999999999999999999999765432233444
No 383
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.13 E-value=0.021 Score=35.02 Aligned_cols=20 Identities=50% Similarity=0.738 Sum_probs=11.6
Q ss_pred CCcEEEeeCCCCcccchhhh
Q 001407 682 SLEILYLSGNNFESLPAIIK 701 (1083)
Q Consensus 682 ~L~~L~Ls~n~l~~lp~~l~ 701 (1083)
+|++|+|++|+++.+|.+++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~ 20 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFS 20 (22)
T ss_dssp TESEEEETSSEESEEGTTTT
T ss_pred CccEEECCCCcCEeCChhhc
Confidence 35666666666666665443
No 384
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=94.12 E-value=0.11 Score=57.51 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|+.|.|||||++.+...+
T Consensus 20 e~~~l~G~NGaGKSTLl~~l~Gl~ 43 (302)
T TIGR01188 20 EVFGFLGPNGAGKTTTIRMLTTLL 43 (302)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998743
No 385
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=0.14 Score=56.45 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcccc--cc-CCCCchHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKL--EV-AGPNIPHFTKER 84 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~--~~-~~~~~~~~~~~~ 84 (1083)
.+|.|-|-+|||||||..+++.++..+- .+.||. ++. +..++.-. ...++.... .. ...++...++..
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs--GEE-----S~~QiklR-A~RL~~~~~~l~l~aEt~~e~I~~~l 164 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS--GEE-----SLQQIKLR-ADRLGLPTNNLYLLAETNLEDIIAEL 164 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe--CCc-----CHHHHHHH-HHHhCCCccceEEehhcCHHHHHHHH
Confidence 5789999999999999999999988776 777875 222 23332221 122332111 11 222232333333
Q ss_pred hcCceeEEEEeCCC
Q 001407 85 VRRMKLLIVLDDVN 98 (1083)
Q Consensus 85 l~~kr~LlVlDdv~ 98 (1083)
-+.+.-++|+|-+.
T Consensus 165 ~~~~p~lvVIDSIQ 178 (456)
T COG1066 165 EQEKPDLVVIDSIQ 178 (456)
T ss_pred HhcCCCEEEEeccc
Confidence 34567899999874
No 386
>PRK13947 shikimate kinase; Provisional
Probab=94.07 E-value=0.042 Score=55.09 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
-|.|+|++|+||||+|++++.++.-
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~ 27 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSF 27 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 4899999999999999999987643
No 387
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=94.05 E-value=0.12 Score=59.15 Aligned_cols=90 Identities=20% Similarity=0.304 Sum_probs=52.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc-ccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccccc-cCCCC--------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS-HEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLE-VAGPN-------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~-~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~-~~~~~-------- 76 (1083)
+-++|.|.+|+|||+|+..+..... .+-+.++|. .+++.. ..+.++.+++... ......- ....+
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~-~iGeR~---rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~ 214 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFC-GIGERC---REGEELYREMKEAGVLDNTVMVFGQMNEPPGARFR 214 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEE-EeccCc---HHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHH
Confidence 5689999999999999999887653 223566665 344332 3344555555543 1111110 01100
Q ss_pred ---chHHHHHHhc---CceeEEEEeCCCChH
Q 001407 77 ---IPHFTKERVR---RMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 ---~~~~~~~~l~---~kr~LlVlDdv~~~~ 101 (1083)
..-.+.++++ ++++|+|+||+....
T Consensus 215 ~~~~a~tiAEyfrd~~G~~VLl~~DslTR~A 245 (449)
T TIGR03305 215 VGHTALTMAEYFRDDEKQDVLLLIDNIFRFI 245 (449)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEecChHHHH
Confidence 1233344443 589999999996554
No 388
>PRK03846 adenylylsulfate kinase; Provisional
Probab=94.03 E-value=0.075 Score=54.70 Aligned_cols=38 Identities=18% Similarity=0.242 Sum_probs=29.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
....+|+|.|++|.||||+|+.+...+...-...+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld 59 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLD 59 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 45679999999999999999999987654433455553
No 389
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.01 E-value=0.046 Score=57.18 Aligned_cols=24 Identities=25% Similarity=0.105 Sum_probs=21.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
+.+++.|.|+.|.||||+.+.+..
T Consensus 29 ~~~~~~l~G~n~~GKstll~~i~~ 52 (222)
T cd03285 29 KSRFLIITGPNMGGKSTYIRQIGV 52 (222)
T ss_pred CCeEEEEECCCCCChHHHHHHHHH
Confidence 568999999999999999999774
No 390
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=93.98 E-value=0.29 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.256 Sum_probs=20.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
++++|.|+.|.||||+.+.+..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 7999999999999999999864
No 391
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.98 E-value=0.049 Score=54.82 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
++|.+.|++|.||||+|+++..+..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 5899999999999999999988753
No 392
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.98 E-value=0.043 Score=52.60 Aligned_cols=27 Identities=33% Similarity=0.730 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
+|+|+|+.|+|||||++.++......|
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~ 27 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNF 27 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccc
Confidence 478999999999999999998654443
No 393
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=93.95 E-value=0.61 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
+++|+|..|.|||||+++++.
T Consensus 24 ~~~i~G~nGsGKStll~al~~ 44 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIRW 44 (197)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 889999999999999999874
No 394
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=93.94 E-value=0.11 Score=58.85 Aligned_cols=89 Identities=15% Similarity=0.223 Sum_probs=49.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhh-ccc-cccCC-CC--------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTL-SEK-LEVAG-PN-------- 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~-~~~-~~~~~-~~-------- 76 (1083)
..++|.|..|+|||||++.++..... +..++. .+++.. ..+.++.+.++..-. ... .-... ++
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~~~--dv~Vi~-lIGER~---rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a 236 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGTTA--DVIVVG-LVGERG---REVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKG 236 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCCCC--CEEEEE-EEcCCh---HHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHH
Confidence 57899999999999999999864332 444443 344433 224445554433311 110 00011 11
Q ss_pred --chHHHHHHh--cCceeEEEEeCCCChHH
Q 001407 77 --IPHFTKERV--RRMKLLIVLDDVNEVGQ 102 (1083)
Q Consensus 77 --~~~~~~~~l--~~kr~LlVlDdv~~~~~ 102 (1083)
..-.+.+++ ++++||+++||+....+
T Consensus 237 ~~~A~tiAEyfrd~G~~VLl~~DslTR~A~ 266 (444)
T PRK08972 237 CETATTIAEYFRDQGLNVLLLMDSLTRYAQ 266 (444)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcChHHHHH
Confidence 111233333 57899999999965543
No 395
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=93.92 E-value=0.054 Score=54.98 Aligned_cols=36 Identities=28% Similarity=0.422 Sum_probs=30.9
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.|+|.|+|+.|+|||||++++..+...+|...+...
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T 37 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT 37 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence 478999999999999999999999888886555543
No 396
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=93.92 E-value=0.42 Score=51.23 Aligned_cols=150 Identities=18% Similarity=0.171 Sum_probs=76.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccc-cCCHHHHHHHHHHhhhccccc-cCCCCchHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET-AGGLEHLQKQMLSTTLSEKLE-VAGPNIPHFTKERV 85 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~-~~~l~~l~~~ll~~l~~~~~~-~~~~~~~~~~~~~l 85 (1083)
--|.|+|+.|.|||+|......+ .+.|.-...+....+.-.. .--+..+.+++..++...... .+..+-...+-+.|
T Consensus 50 nsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L 128 (408)
T KOG2228|consen 50 NSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEAL 128 (408)
T ss_pred CceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHHH
Confidence 34788999999999998887766 3445544444433332211 012334455554443322111 12222223344444
Q ss_pred cC------ceeEEEEeCCCChH----H--HHHHhhcc-CCCCCCcEEEEEecchhHH---hhhcc--ccccEEEecCCCH
Q 001407 86 RR------MKLLIVLDDVNEVG----Q--LKRLIGEL-DQFGQGSRIVVTTRDKRVL---EKFRG--EEKKIYRVNGLEF 147 (1083)
Q Consensus 86 ~~------kr~LlVlDdv~~~~----~--~~~l~~~~-~~~~~gsrIiiTTR~~~v~---~~~~~--~~~~~~~v~~L~~ 147 (1083)
+. -+|.+|+|.++-.. | +-.+...- ....|=+-|-+|||-.-+- +...+ ....++-.+.++-
T Consensus 129 ~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l 208 (408)
T KOG2228|consen 129 KKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPL 208 (408)
T ss_pred hcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCCh
Confidence 32 27899999876433 2 22222221 1234677788999965221 11111 0223555666666
Q ss_pred HHHHHHHHHhh
Q 001407 148 EEAFEHFCNFA 158 (1083)
Q Consensus 148 ~ea~~Lf~~~a 158 (1083)
++-.+++++..
T Consensus 209 ~~yv~l~r~ll 219 (408)
T KOG2228|consen 209 GDYVDLYRKLL 219 (408)
T ss_pred HHHHHHHHHHh
Confidence 66666665543
No 397
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=93.92 E-value=0.094 Score=51.91 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=26.1
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
....+++|+|..|.|||||++++...+..+
T Consensus 4 ~~~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 4 TMIPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred CCceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 457799999999999999999999877653
No 398
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.91 E-value=0.31 Score=48.39 Aligned_cols=32 Identities=28% Similarity=0.370 Sum_probs=25.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEE
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSC 39 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~ 39 (1083)
+.|.+.|.+|+||||+|+.++..++++-..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi 33 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVI 33 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhcc
Confidence 46889999999999999999987765544433
No 399
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=93.87 E-value=0.21 Score=58.85 Aligned_cols=57 Identities=16% Similarity=0.317 Sum_probs=37.4
Q ss_pred HHHHHhcCceeEEEEeC------CCChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecC
Q 001407 80 FTKERVRRMKLLIVLDD------VNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNG 144 (1083)
Q Consensus 80 ~~~~~l~~kr~LlVlDd------v~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~ 144 (1083)
.+.+.|-.+.=+++||. +...+.++..+.. -+| .+||+|.|+.....+ +.+++++..
T Consensus 163 ~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~----~~g-tviiVSHDR~FLd~V---~t~I~~ld~ 225 (530)
T COG0488 163 ALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR----YPG-TVIVVSHDRYFLDNV---ATHILELDR 225 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCC-cEEEEeCCHHHHHHH---hhheEEecC
Confidence 34445556667999994 4444445554443 346 799999999999887 456666543
No 400
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.80 E-value=1.6 Score=47.76 Aligned_cols=156 Identities=6% Similarity=0.068 Sum_probs=88.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcc--------c-Cc-eEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCC
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSH--------E-FE-GSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPN 76 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~--------~-F~-~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~ 76 (1083)
..+..++|..|+||+++|+++.+.+-. . .+ ...++. ..+ .. -++.++. ++...+....
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~g--~~-i~vd~Ir-~l~~~~~~~~------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IFD--KD-LSKSEFL-SAINKLYFSS------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cCC--Cc-CCHHHHH-HHHHHhccCC-------
Confidence 467789999999999999999987611 1 11 122221 101 11 2222222 2222211100
Q ss_pred chHHHHHHhcCceeEEEEeCCCChH--HHHHHhhccCCCCCCcEEEEEec-chhHHhhhccccccEEEecCCCHHHHHHH
Q 001407 77 IPHFTKERVRRMKLLIVLDDVNEVG--QLKRLIGELDQFGQGSRIVVTTR-DKRVLEKFRGEEKKIYRVNGLEFEEAFEH 153 (1083)
Q Consensus 77 ~~~~~~~~l~~kr~LlVlDdv~~~~--~~~~l~~~~~~~~~gsrIiiTTR-~~~v~~~~~~~~~~~~~v~~L~~~ea~~L 153 (1083)
.-.+.+-++|+|+++... ..+.|+..+....+++.+|++|. ...+.....+ ....+++.++++++..+.
T Consensus 86 -------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~~~~f~~l~~~~l~~~ 157 (299)
T PRK07132 86 -------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQVFNVKEPDQQKILAK 157 (299)
T ss_pred -------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeEEEECCCCCHHHHHHH
Confidence 001356678888886653 35667666665566777776664 4445544321 567899999999998887
Q ss_pred HHHhhcCCCCCCchhHHHHHHHHHhhCCCchhHHHHh
Q 001407 154 FCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLG 190 (1083)
Q Consensus 154 f~~~a~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~ 190 (1083)
+.... .+ .+.+..++...+|.=.|++.++
T Consensus 158 l~~~~-----~~---~~~a~~~a~~~~~~~~a~~~~~ 186 (299)
T PRK07132 158 LLSKN-----KE---KEYNWFYAYIFSNFEQAEKYIN 186 (299)
T ss_pred HHHcC-----CC---hhHHHHHHHHcCCHHHHHHHHh
Confidence 76531 11 2335666666776334555543
No 401
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.77 E-value=0.34 Score=59.07 Aligned_cols=26 Identities=23% Similarity=0.351 Sum_probs=23.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
-+||+++|+.|+||||++.+++..+.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~ 210 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCV 210 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHH
Confidence 47999999999999999999998653
No 402
>PRK13948 shikimate kinase; Provisional
Probab=93.75 E-value=0.057 Score=54.30 Aligned_cols=28 Identities=21% Similarity=0.313 Sum_probs=24.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
...+.|.++||.|.||||+++.+..++.
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg 35 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALM 35 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4567899999999999999999998764
No 403
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=93.74 E-value=0.28 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|+.|.|||||.+.++...
T Consensus 34 ei~gllGpNGaGKSTLl~~l~Gl~ 57 (306)
T PRK13537 34 ECFGLLGPNGAGKTTTLRMLLGLT 57 (306)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998743
No 404
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=93.74 E-value=0.047 Score=55.01 Aligned_cols=23 Identities=52% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|+|.|.+|.||||+|++++...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999875
No 405
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=93.74 E-value=0.16 Score=55.20 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=21.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||++.+...
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNGI 54 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 58999999999999999999864
No 406
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=93.73 E-value=0.79 Score=54.06 Aligned_cols=111 Identities=15% Similarity=0.196 Sum_probs=68.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc--------ccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFS--------HEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNI 77 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~--------~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~ 77 (1083)
.-+.+-|.|.+|.|||..+..|.+.++ ..|++ +.+..++- .+..++...|+..+........ ..
T Consensus 421 ~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~y-veINgm~l-----~~~~~~Y~~I~~~lsg~~~~~~--~a 492 (767)
T KOG1514|consen 421 LGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDY-VEINGLRL-----ASPREIYEKIWEALSGERVTWD--AA 492 (767)
T ss_pred CceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccE-EEEcceee-----cCHHHHHHHHHHhcccCcccHH--HH
Confidence 345889999999999999999998543 23442 23332222 4566888888888765543321 11
Q ss_pred hHHHHHHhc-----CceeEEEEeCCCChHH--HHHHhhccCCCC-CCcEEEEEec
Q 001407 78 PHFTKERVR-----RMKLLIVLDDVNEVGQ--LKRLIGELDQFG-QGSRIVVTTR 124 (1083)
Q Consensus 78 ~~~~~~~l~-----~kr~LlVlDdv~~~~~--~~~l~~~~~~~~-~gsrIiiTTR 124 (1083)
...+..+.. .+..+|++|+++..-. -+.+-..+.|-. ++|+++|.+=
T Consensus 493 l~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLvvi~I 547 (767)
T KOG1514|consen 493 LEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLVVIAI 547 (767)
T ss_pred HHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceEEEEe
Confidence 244444443 3467888898754422 234444566644 8898877663
No 407
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.73 E-value=0.57 Score=53.45 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.8
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.-++|+++|+.|+||||++.+++.+.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 35799999999999999999998753
No 408
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.71 E-value=0.1 Score=53.04 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRG 46 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~ 46 (1083)
.|+|+|-||+||||+|..+..++..+-...+.+.+..+
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp 39 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP 39 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC
Confidence 58999999999999999977665554334555555544
No 409
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=93.69 E-value=1.2 Score=49.08 Aligned_cols=48 Identities=23% Similarity=0.082 Sum_probs=33.4
Q ss_pred EEEecCCCHHHHHHHHHHhhcCCCCCC-chhHHHHHHHHHhhCCCchhH
Q 001407 139 IYRVNGLEFEEAFEHFCNFAFKENHCP-EDLNWHSRSVVSYTKGNPLVL 186 (1083)
Q Consensus 139 ~~~v~~L~~~ea~~Lf~~~a~~~~~~~-~~~~~l~~~i~~~~~glPLal 186 (1083)
+++|++++.+|+..++..++-.+-... ...+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence 789999999999999998874433222 233344566666668998654
No 410
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.65 E-value=0.049 Score=56.93 Aligned_cols=24 Identities=38% Similarity=0.554 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+|||.|..|.||||+|+.+...+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 589999999999999999998765
No 411
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.63 E-value=0.58 Score=53.42 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=28.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
...++|.++|..|+||||+|.+++..++.+-..++.+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV 134 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV 134 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 3478999999999999999999988665443233433
No 412
>PRK13409 putative ATPase RIL; Provisional
Probab=93.61 E-value=0.33 Score=58.83 Aligned_cols=60 Identities=13% Similarity=0.230 Sum_probs=36.3
Q ss_pred HHHHhcCceeEEEEeCCC------ChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhccccccEEEecC
Q 001407 81 TKERVRRMKLLIVLDDVN------EVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNG 144 (1083)
Q Consensus 81 ~~~~l~~kr~LlVlDdv~------~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~~~~~~~v~~ 144 (1083)
+.+.+....=+++||.-. ...++..+...+.. ..|..||++|.+...+... .++++.+.+
T Consensus 464 iAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~-~~g~tviivsHD~~~~~~~---aDrvivl~~ 529 (590)
T PRK13409 464 IAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAE-EREATALVVDHDIYMIDYI---SDRLMVFEG 529 (590)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHh---CCEEEEEcC
Confidence 344556667799999542 23333344433321 2366799999998877766 456666654
No 413
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=93.58 E-value=0.05 Score=56.10 Aligned_cols=23 Identities=52% Similarity=0.797 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|||.|.+|+||||+|+.+...+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998865
No 414
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.58 E-value=0.18 Score=58.40 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=24.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.-++|+|+|.+|+||||++.+++.....+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~ 377 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQ 377 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 45799999999999999999998865443
No 415
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=93.55 E-value=0.14 Score=57.83 Aligned_cols=124 Identities=20% Similarity=0.194 Sum_probs=65.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCce-----EEEEeeccccccc---------------cC-CHHHHHHHHHHhhh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEG-----SCFVSDVRGNSET---------------AG-GLEHLQKQMLSTTL 66 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~-----~~~~~~~~~~~~~---------------~~-~l~~l~~~ll~~l~ 66 (1083)
|--|++|..|+|||||.+++.+..-..|.. .+++.......+. .. .+.++...++..++
T Consensus 107 rRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glG 186 (582)
T KOG0062|consen 107 RRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERLDFLAEEKELLAGLTLEEIYDKILAGLG 186 (582)
T ss_pred cccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhCC
Confidence 567999999999999999999843334433 2233221111100 01 22333333444433
Q ss_pred ccccc--cCCC------CchHHHHHHhcCceeEEEEeCCCC---hHHHHHHhhccCCCCCCcEEEEEecchhHHhhhc
Q 001407 67 SEKLE--VAGP------NIPHFTKERVRRMKLLIVLDDVNE---VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR 133 (1083)
Q Consensus 67 ~~~~~--~~~~------~~~~~~~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~ 133 (1083)
-.... .+.. ...-.+.+.+-.+.=|+.||.-.+ ...+..|...+.. .+..+||.|.|+..+....
T Consensus 187 Ft~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t--~~~T~liVSHDr~FLn~V~ 262 (582)
T KOG0062|consen 187 FTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQT--WKITSLIVSHDRNFLNTVC 262 (582)
T ss_pred CCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhh--CCceEEEEeccHHHHHHHH
Confidence 22111 1111 122445566666778999995432 2223333333321 2366999999998877663
No 416
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.55 E-value=0.35 Score=48.74 Aligned_cols=55 Identities=5% Similarity=0.122 Sum_probs=36.0
Q ss_pred HHHHHHhcCceeEEEEeCCCC---hHHHHHHhhccC-CCCCCcEEEEEecchhHHhhhc
Q 001407 79 HFTKERVRRMKLLIVLDDVNE---VGQLKRLIGELD-QFGQGSRIVVTTRDKRVLEKFR 133 (1083)
Q Consensus 79 ~~~~~~l~~kr~LlVlDdv~~---~~~~~~l~~~~~-~~~~gsrIiiTTR~~~v~~~~~ 133 (1083)
-++.+.|.-++-++.+|...+ ++-..+.+.-.. -...|-..||.|.+-..|....
T Consensus 145 VAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~Va 203 (240)
T COG1126 145 VAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVA 203 (240)
T ss_pred HHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhh
Confidence 456667777788999998754 343332222211 1246888999999998888874
No 417
>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.
Probab=93.54 E-value=0.052 Score=32.00 Aligned_cols=20 Identities=65% Similarity=0.994 Sum_probs=18.0
Q ss_pred CceEEEcCCCccccccCCCc
Q 001407 418 NLVELNLRCSKVEQPWEGEK 437 (1083)
Q Consensus 418 ~L~~L~L~~n~i~~lw~~~~ 437 (1083)
+|.+|+|++++++.+|+|.+
T Consensus 1 ~LVeL~m~~S~lekLW~G~k 20 (20)
T PF07725_consen 1 NLVELNMPYSKLEKLWEGVK 20 (20)
T ss_pred CcEEEECCCCChHHhcCccC
Confidence 58999999999999999864
No 418
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.52 E-value=0.075 Score=56.12 Aligned_cols=31 Identities=35% Similarity=0.475 Sum_probs=26.8
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.+...+|||.|+.|.|||||++.+...++..
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~ 60 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQD 60 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 4568899999999999999999999876543
No 419
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.50 E-value=0.2 Score=55.75 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=26.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc--ccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS--HEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~--~~F~~~~~~~ 42 (1083)
-++|.++|+.|+||||...+++.+.. ..=..+.++.
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiIT 240 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIIT 240 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEE
Confidence 68999999999999887777766544 3334555554
No 420
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.50 E-value=0.2 Score=53.02 Aligned_cols=24 Identities=33% Similarity=0.394 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~g~~ 50 (232)
T cd03300 27 EFFTLLGPSGCGKTTLLRLIAGFE 50 (232)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 589999999999999999998754
No 421
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=93.49 E-value=0.85 Score=53.85 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=29.7
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEee
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 43 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 43 (1083)
...+++.+.|++|+||||.++.++.+. .|+..-|...
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~el--g~~v~Ew~np 79 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKEL--GFEVQEWINP 79 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHh--CCeeEEecCC
Confidence 346799999999999999999999876 4566667543
No 422
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=93.49 E-value=0.21 Score=54.58 Aligned_cols=36 Identities=31% Similarity=0.332 Sum_probs=30.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
-|+|-|+|..|+||||||..+.....+.-..++|++
T Consensus 53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID 88 (322)
T PF00154_consen 53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID 88 (322)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence 468999999999999999999988766667788886
No 423
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.48 E-value=0.13 Score=52.39 Aligned_cols=92 Identities=17% Similarity=0.139 Sum_probs=52.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcccc---ccCCCCchHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKL---EVAGPNIPHFTKE 83 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~---~~~~~~~~~~~~~ 83 (1083)
-.+++|.|..|.||||+++.+...+... ...+.+.+..+.... . .... .+..... ..........++.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~~~-~~~i~ied~~E~~~~-~------~~~~-~~~~~~~~~~~~~~~~~~~~l~~ 95 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIPPD-ERIITIEDTAELQLP-H------PNWV-RLVTRPGNVEGSGEVTMADLLRS 95 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCC-CCEEEECCccccCCC-C------CCEE-EEEEecCCCCCCCccCHHHHHHH
Confidence 4679999999999999999998866533 334444332221110 0 0000 0000000 0111223356666
Q ss_pred HhcCceeEEEEeCCCChHHHHHHh
Q 001407 84 RVRRMKLLIVLDDVNEVGQLKRLI 107 (1083)
Q Consensus 84 ~l~~kr~LlVlDdv~~~~~~~~l~ 107 (1083)
.++..+=.+|++.+.+.+.++.+.
T Consensus 96 ~lR~~pd~i~igEir~~ea~~~~~ 119 (186)
T cd01130 96 ALRMRPDRIIVGEVRGGEALDLLQ 119 (186)
T ss_pred HhccCCCEEEEEccCcHHHHHHHH
Confidence 677777888999999888766544
No 424
>PRK13949 shikimate kinase; Provisional
Probab=93.46 E-value=0.065 Score=53.44 Aligned_cols=25 Identities=36% Similarity=0.446 Sum_probs=22.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+-|.|+|+.|.||||+|+.++..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~ 26 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG 26 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999998764
No 425
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.45 E-value=0.066 Score=54.16 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
++|+|.|+.|+||||+|+++...+.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999988653
No 426
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.44 E-value=0.24 Score=58.24 Aligned_cols=27 Identities=41% Similarity=0.481 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+-+|..++|++|+||||||..++.+.
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa 350 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA 350 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc
Confidence 456899999999999999999999764
No 427
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.44 E-value=0.55 Score=48.94 Aligned_cols=24 Identities=17% Similarity=-0.064 Sum_probs=21.4
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHH
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
..++++|.|+.|.||||+.+.+..
T Consensus 30 ~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 30 GGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347889999999999999999887
No 428
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=93.43 E-value=0.059 Score=52.09 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIF 28 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~ 28 (1083)
.|+|.|.+|+||||+++++.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999998
No 429
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=93.42 E-value=0.6 Score=50.01 Aligned_cols=24 Identities=29% Similarity=0.599 Sum_probs=21.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|..|.|||||++.++...
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998743
No 430
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.42 E-value=0.069 Score=55.02 Aligned_cols=40 Identities=23% Similarity=0.332 Sum_probs=31.2
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeecc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVR 45 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~ 45 (1083)
....+|.++||+|.||||..++++..++.++.. .|+.|+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p-pYviNLD 56 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTP-PYVINLD 56 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCC-CeEEeCC
Confidence 446789999999999999999999987766543 4555554
No 431
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=93.42 E-value=0.38 Score=49.54 Aligned_cols=23 Identities=30% Similarity=0.120 Sum_probs=21.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
.++++|.|+.|.||||+.+.++.
T Consensus 29 ~~~~~l~G~n~~GKstll~~i~~ 51 (204)
T cd03282 29 SRFHIITGPNMSGKSTYLKQIAL 51 (204)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 48899999999999999999875
No 432
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=93.41 E-value=0.38 Score=51.74 Aligned_cols=47 Identities=21% Similarity=0.355 Sum_probs=32.9
Q ss_pred cCceeEEEEeCC------CChHHHHHHhhccCCCCCCcEEEEEecchhHHhhhc
Q 001407 86 RRMKLLIVLDDV------NEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR 133 (1083)
Q Consensus 86 ~~kr~LlVlDdv------~~~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~ 133 (1083)
....=|||-|.- ....|+-.++..+.. ..|..||+.|.|-.++..+.
T Consensus 169 a~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~-e~~~aiilITHDl~vva~~a 221 (316)
T COG0444 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQR-EKGTALILITHDLGVVAEIA 221 (316)
T ss_pred hCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHH-hcCCEEEEEeCCHHHHHHhc
Confidence 344569999954 334455555555554 57889999999999887774
No 433
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.41 E-value=0.29 Score=54.14 Aligned_cols=23 Identities=43% Similarity=0.589 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999864
No 434
>CHL00060 atpB ATP synthase CF1 beta subunit
Probab=93.40 E-value=0.27 Score=56.65 Aligned_cols=90 Identities=19% Similarity=0.239 Sum_probs=52.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhccc-CceEEEEeeccccccccCCHHHHHHHHHHh--hhcc------cc-cc---CC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHE-FEGSCFVSDVRGNSETAGGLEHLQKQMLST--TLSE------KL-EV---AG 74 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~-F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~--l~~~------~~-~~---~~ 74 (1083)
+-++|.|-+|+|||||+..+...+.+. =+.++|. .+++.. ..+.++...+... +... .. -. +.
T Consensus 162 QR~gIfgg~GvGKs~L~~~~~~~~~~~~~dv~V~~-lIGERg---rEv~efi~~~~~~~~~~~~~~~~~rsvvv~atsd~ 237 (494)
T CHL00060 162 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFG-GVGERT---REGNDLYMEMKESGVINEQNIAESKVALVYGQMNE 237 (494)
T ss_pred CEEeeecCCCCChhHHHHHHHHHHHHhcCCeEEEE-EeccCc---hHHHHHHHHHHhcCccccCcccccceEEEEECCCC
Confidence 568999999999999999988764322 2455554 454433 3355666666552 1111 00 00 11
Q ss_pred C--------CchHHHHHHhc--C-ceeEEEEeCCCChH
Q 001407 75 P--------NIPHFTKERVR--R-MKLLIVLDDVNEVG 101 (1083)
Q Consensus 75 ~--------~~~~~~~~~l~--~-kr~LlVlDdv~~~~ 101 (1083)
. ...-.+.++++ + +++|+++||+....
T Consensus 238 p~~~R~~a~~~A~tiAEyfrd~g~~~VLll~DslTR~A 275 (494)
T CHL00060 238 PPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFV 275 (494)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCCEEEEcccchHHH
Confidence 1 11233455553 3 49999999996554
No 435
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=93.39 E-value=0.094 Score=57.91 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=25.1
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+...++++++|++|.||||||+++++.+.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~ 103 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLE 103 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34568999999999999999999998653
No 436
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=93.38 E-value=0.11 Score=53.78 Aligned_cols=38 Identities=21% Similarity=0.373 Sum_probs=29.4
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
..++++|+++|..|.|||||..++........ .+.++.
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~-~v~v~~ 56 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKDEV-KIAVIE 56 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhcCC-eEEEEE
Confidence 45799999999999999999999988754332 344443
No 437
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=93.38 E-value=0.13 Score=55.12 Aligned_cols=38 Identities=26% Similarity=0.322 Sum_probs=32.6
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEee
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 43 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 43 (1083)
.-+++=|+|+.|.||||+|.+++-.....-..++|++.
T Consensus 59 ~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fIDt 96 (279)
T COG0468 59 RGRITEIYGPESSGKTTLALQLVANAQKPGGKAAFIDT 96 (279)
T ss_pred cceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEeC
Confidence 45789999999999999999998877666678899973
No 438
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=93.36 E-value=0.094 Score=51.33 Aligned_cols=33 Identities=21% Similarity=0.224 Sum_probs=26.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
||+|+|+.|+||||++.++...++.+--.+..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~vi 33 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATI 33 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 589999999999999999999876652234444
No 439
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=93.36 E-value=0.41 Score=51.91 Aligned_cols=34 Identities=35% Similarity=0.517 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEee
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 43 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 43 (1083)
.+++|+|..|.|||||++.++..+. -.+.+++..
T Consensus 31 e~~~IvG~nGsGKSTLl~~L~gl~~--~~G~I~i~g 64 (275)
T cd03289 31 QRVGLLGRTGSGKSTLLSAFLRLLN--TEGDIQIDG 64 (275)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC--CCcEEEECC
Confidence 4799999999999999999987653 245555543
No 440
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=93.35 E-value=0.2 Score=57.17 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=48.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhcccc--ccCC-CC-------
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKL--EVAG-PN------- 76 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~--~~~~-~~------- 76 (1083)
-+.++|.|..|+|||||++.++..... +..++. .+++... .+.++....+.+-..... -... .+
T Consensus 158 Gqri~I~G~sG~GKTtLL~~I~~~~~~--d~~v~~-~iGER~r---Ev~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~ 231 (442)
T PRK08927 158 GQRMGIFAGSGVGKSVLLSMLARNADA--DVSVIG-LIGERGR---EVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQ 231 (442)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccCC--CEEEEE-EEecCcH---HHHHHHHHHhhccCceeEEEEEECCCCCHHHHHH
Confidence 467899999999999999999876533 344443 3433322 233444333332110000 0000 10
Q ss_pred ---chHHHHHHh--cCceeEEEEeCCCChH
Q 001407 77 ---IPHFTKERV--RRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 ---~~~~~~~~l--~~kr~LlVlDdv~~~~ 101 (1083)
..-.+.+++ +++.||+++||+....
T Consensus 232 a~~~a~tiAEyfrd~G~~Vll~~DslTr~A 261 (442)
T PRK08927 232 AAYLTLAIAEYFRDQGKDVLCLMDSVTRFA 261 (442)
T ss_pred HHHHHHHHHHHHHHCCCcEEEEEeCcHHHH
Confidence 111233333 5789999999996544
No 441
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=93.34 E-value=0.065 Score=52.09 Aligned_cols=23 Identities=39% Similarity=0.586 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|.|.|++|.||||+|+++..+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999865
No 442
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=93.31 E-value=0.72 Score=48.44 Aligned_cols=24 Identities=42% Similarity=0.685 Sum_probs=21.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
-.+++|.|..|.|||||++.++..
T Consensus 6 Ge~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 6 GELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 368999999999999999999864
No 443
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.82 Score=54.38 Aligned_cols=146 Identities=21% Similarity=0.176 Sum_probs=0.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHh-hhccccccCCCCchHHHHHHhcCc
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLST-TLSEKLEVAGPNIPHFTKERVRRM 88 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~-l~~~~~~~~~~~~~~~~~~~l~~k 88 (1083)
|.++|++|.|||-+|++|+.+.+=.|-.+ .|.+-+-.-+-+. -..+ +.+.+.-..+
T Consensus 708 ILLYGPPGTGKTLlAKAVATEcsL~FlSV-------------KGPELLNMYVGqSE~NVR----------~VFerAR~A~ 764 (953)
T KOG0736|consen 708 ILLYGPPGTGKTLLAKAVATECSLNFLSV-------------KGPELLNMYVGQSEENVR----------EVFERARSAA 764 (953)
T ss_pred eEEECCCCCchHHHHHHHHhhceeeEEee-------------cCHHHHHHHhcchHHHHH----------HHHHHhhccC
Q ss_pred eeEEEEeCCCC-------------------hHHHHHHhhccCCCCCCcEEEEEecchhHHhhhc---cccccEEEecCCC
Q 001407 89 KLLIVLDDVNE-------------------VGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFR---GEEKKIYRVNGLE 146 (1083)
Q Consensus 89 r~LlVlDdv~~-------------------~~~~~~l~~~~~~~~~gsrIiiTTR~~~v~~~~~---~~~~~~~~v~~L~ 146 (1083)
.+.|.+|.+++ .+-+.++-+-......+--||=.|.-.++....- +..+.-+.|+.=+
T Consensus 765 PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 765 PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCccccChhhcCCCccceeEEecCCc
Q ss_pred HHHHHHHHHHhhcCCCCCCchhHHHHHHHHHhhC
Q 001407 147 FEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTK 180 (1083)
Q Consensus 147 ~~ea~~Lf~~~a~~~~~~~~~~~~l~~~i~~~~~ 180 (1083)
++++..=.-+..-+.-.-.++.. ..+|+++|.
T Consensus 845 d~esk~~vL~AlTrkFkLdedVd--L~eiAk~cp 876 (953)
T KOG0736|consen 845 DAESKLRVLEALTRKFKLDEDVD--LVEIAKKCP 876 (953)
T ss_pred cHHHHHHHHHHHHHHccCCCCcC--HHHHHhhCC
No 444
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.26 E-value=0.1 Score=51.30 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
-.++.|.|++|+|||||++++..+.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4689999999999999999999876
No 445
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=93.26 E-value=0.063 Score=52.49 Aligned_cols=23 Identities=35% Similarity=0.692 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
+|.|.|++|+||||+|+.+..+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc
Confidence 47899999999999999998863
No 446
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=93.25 E-value=0.12 Score=51.42 Aligned_cols=24 Identities=38% Similarity=0.588 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
|.|.|.+|+||||++++++..++.
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 689999999999999999997754
No 447
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=93.23 E-value=0.62 Score=43.25 Aligned_cols=20 Identities=35% Similarity=0.479 Sum_probs=18.3
Q ss_pred EEEcCCCCcHHHHHHHHHHH
Q 001407 11 GIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 11 ~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.|.|-+|+|||+|+.++.++
T Consensus 12 lIigDsgVGKssLl~rF~dd 31 (198)
T KOG0079|consen 12 LIIGDSGVGKSSLLLRFADD 31 (198)
T ss_pred HeecCCcccHHHHHHHHhhc
Confidence 58899999999999999985
No 448
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=93.23 E-value=0.34 Score=55.69 Aligned_cols=87 Identities=17% Similarity=0.232 Sum_probs=49.0
Q ss_pred EEEEEEcCCCCcHHHHHHH-HHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhh-hcccc-cc-CC---------
Q 001407 8 QIVGIWGMGGIGKTTLAKA-IFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKL-EV-AG--------- 74 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~-~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~-~~-~~--------- 74 (1083)
+-++|.|-.|+||||||.. +.++. .-+..|.+..+++.. ..+.++.+.+...- ..... -. ..
T Consensus 142 QR~~I~g~~g~GKt~Lal~~I~~q~--~~dv~cV~~~IGer~---rev~e~~~~l~~~~~l~~tvvV~atad~~~~~r~~ 216 (485)
T CHL00059 142 QRELIIGDRQTGKTAVATDTILNQK--GQNVICVYVAIGQKA---SSVAQVVTTLQERGAMEYTIVVAETADSPATLQYL 216 (485)
T ss_pred CEEEeecCCCCCHHHHHHHHHHhcc--cCCeEEEEEEecCCc---hHHHHHHHHhhcccchhceEEEEeCCCCCHHHHHH
Confidence 5689999999999999654 55542 335554444454433 33555665555431 11110 00 00
Q ss_pred -----CCchHHHHHHhcCceeEEEEeCCCChH
Q 001407 75 -----PNIPHFTKERVRRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 75 -----~~~~~~~~~~l~~kr~LlVlDdv~~~~ 101 (1083)
..+.+.++. +++++|+|+||+....
T Consensus 217 ap~~a~aiAEyfr~--~G~~VLlv~DdlTr~A 246 (485)
T CHL00059 217 APYTGAALAEYFMY--RGRHTLIIYDDLSKQA 246 (485)
T ss_pred HHHHHhhHHHHHHH--cCCCEEEEEcChhHHH
Confidence 112233333 5789999999996554
No 449
>PRK00279 adk adenylate kinase; Reviewed
Probab=93.22 E-value=0.23 Score=51.89 Aligned_cols=23 Identities=35% Similarity=0.426 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.|.|.|++|.||||+|+.++.++
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~ 24 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKY 24 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998764
No 450
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=93.20 E-value=1 Score=44.85 Aligned_cols=27 Identities=37% Similarity=0.516 Sum_probs=23.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+-+|+||.|..|.||||+.+.++.-+.
T Consensus 27 ~Gei~GlLG~NGAGKTT~LRmiatlL~ 53 (245)
T COG4555 27 EGEITGLLGENGAGKTTLLRMIATLLI 53 (245)
T ss_pred cceEEEEEcCCCCCchhHHHHHHHhcc
Confidence 457999999999999999999998543
No 451
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=93.20 E-value=0.86 Score=49.94 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFE 36 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 36 (1083)
+-|.|.|.+|+||||+|+.++..+...|-
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 45899999999999999999998765544
No 452
>PRK13768 GTPase; Provisional
Probab=93.19 E-value=0.11 Score=55.62 Aligned_cols=35 Identities=37% Similarity=0.393 Sum_probs=26.5
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
..++.|.|+||+||||++..+....+.+-..++.+
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i 36 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV 36 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence 36899999999999999999988665543333333
No 453
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.18 E-value=0.066 Score=57.46 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=30.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEE
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCF 40 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~ 40 (1083)
.++.+|.|.|.+|.|||||+.++...+.......+.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI 137 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI 137 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence 468899999999999999999999988766544433
No 454
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=93.18 E-value=0.077 Score=53.14 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=22.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.+.|.|+|+.|.||||+|+.+.....
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~ 29 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN 29 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC
Confidence 45699999999999999999998753
No 455
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.17 E-value=0.079 Score=51.83 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
+-|.++||.|.||||+.++++..+.-.|
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4588999999999999999998765443
No 456
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=93.16 E-value=0.077 Score=52.07 Aligned_cols=22 Identities=32% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
|.|+|++|.||||+|++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999876
No 457
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.15 E-value=0.087 Score=53.80 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=23.2
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
...+|.|.|++|+||||+|+.++.+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~ 27 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999999874
No 458
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=93.14 E-value=0.4 Score=52.54 Aligned_cols=25 Identities=40% Similarity=0.614 Sum_probs=22.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
.++|+.|+.|.|||||.+.+...++
T Consensus 32 ei~gllG~NGAGKTTllk~l~gl~~ 56 (293)
T COG1131 32 EIFGLLGPNGAGKTTLLKILAGLLK 56 (293)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5899999999999999999997553
No 459
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=93.13 E-value=0.42 Score=48.92 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 001407 10 VGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 10 v~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
|.|.|++|.||||+|+.++.+.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~ 23 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKY 23 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999999864
No 460
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.59 Score=54.39 Aligned_cols=92 Identities=13% Similarity=0.187 Sum_probs=57.3
Q ss_pred ceeEEEEeCCCC--hHHHHHHhhccCCCCCCcEEEEEecch-hHHhhhccccccEEEecCCCHHHHHHHHHHhhcCCCCC
Q 001407 88 MKLLIVLDDVNE--VGQLKRLIGELDQFGQGSRIVVTTRDK-RVLEKFRGEEKKIYRVNGLEFEEAFEHFCNFAFKENHC 164 (1083)
Q Consensus 88 kr~LlVlDdv~~--~~~~~~l~~~~~~~~~gsrIiiTTR~~-~v~~~~~~~~~~~~~v~~L~~~ea~~Lf~~~a~~~~~~ 164 (1083)
+.=..|+|.|.- ...+..|+..+.--.+.-..|..|++. .+....- .....|..+.++.++-...+...+-.+...
T Consensus 119 ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIl-SRcq~f~fkri~~~~I~~~L~~i~~~E~I~ 197 (515)
T COG2812 119 RYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTIL-SRCQRFDFKRLDLEEIAKHLAAILDKEGIN 197 (515)
T ss_pred cceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhh-hccccccccCCCHHHHHHHHHHHHHhcCCc
Confidence 344788999864 456888888776555566656655555 3433322 155679999999998888887766433322
Q ss_pred CchhHHHHHHHHHhhCCC
Q 001407 165 PEDLNWHSRSVVSYTKGN 182 (1083)
Q Consensus 165 ~~~~~~l~~~i~~~~~gl 182 (1083)
. ..+...-|++..+|-
T Consensus 198 ~--e~~aL~~ia~~a~Gs 213 (515)
T COG2812 198 I--EEDALSLIARAAEGS 213 (515)
T ss_pred c--CHHHHHHHHHHcCCC
Confidence 2 223345566666664
No 461
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.10 E-value=0.13 Score=56.70 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=26.3
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
....+|+++|++|+||||++.+++..++.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~ 141 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQ 141 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhc
Confidence 357899999999999999999999877654
No 462
>PRK13946 shikimate kinase; Provisional
Probab=93.07 E-value=0.078 Score=53.83 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=23.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+.|.+.|+.|.||||+|+.++.++
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~L 34 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATML 34 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 4679999999999999999999876
No 463
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=93.04 E-value=0.27 Score=48.89 Aligned_cols=79 Identities=8% Similarity=0.100 Sum_probs=45.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCC----CchHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGP----NIPHFTKER 84 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~----~~~~~~~~~ 84 (1083)
+|.|.|.+|.||||+|.++..+... ..+|+.-. . ..-.+.++++......+....... ++...+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~---~~~~iat~-----~-~~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~ 73 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGL---QVLYIATA-----Q-PFDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRAD 73 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCC---CcEeCcCC-----C-CChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhh
Confidence 6899999999999999999876432 23454311 1 223355566655544443333222 233444332
Q ss_pred hcCceeEEEEeCC
Q 001407 85 VRRMKLLIVLDDV 97 (1083)
Q Consensus 85 l~~kr~LlVlDdv 97 (1083)
..+ .-++|+|.+
T Consensus 74 ~~~-~~~VlID~L 85 (170)
T PRK05800 74 AAP-GRCVLVDCL 85 (170)
T ss_pred cCC-CCEEEehhH
Confidence 332 336888976
No 464
>PRK15453 phosphoribulokinase; Provisional
Probab=93.02 E-value=0.13 Score=54.56 Aligned_cols=30 Identities=30% Similarity=0.442 Sum_probs=25.7
Q ss_pred CCCeEEEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 4 ~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
+....+|+|.|.+|.||||+|+++.+.+..
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~ 31 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRR 31 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 356789999999999999999999976643
No 465
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=93.01 E-value=0.12 Score=56.62 Aligned_cols=35 Identities=34% Similarity=0.400 Sum_probs=28.1
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEE
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFV 41 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~ 41 (1083)
.|+|.+.|.|||||||+|.+.+-........+.-+
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlv 36 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLV 36 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEE
Confidence 58999999999999999999887766655444444
No 466
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.00 E-value=0.61 Score=47.69 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
--+|+|+|..|.|||||.+.+..
T Consensus 30 GE~VaiIG~SGaGKSTLLR~lng 52 (258)
T COG3638 30 GEMVAIIGPSGAGKSTLLRSLNG 52 (258)
T ss_pred CcEEEEECCCCCcHHHHHHHHhc
Confidence 35899999999999999999976
No 467
>TIGR03324 alt_F1F0_F1_al alternate F1F0 ATPase, F1 subunit alpha. A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 alpha subunit of this apparent second ATP synthase.
Probab=93.00 E-value=0.4 Score=55.38 Aligned_cols=88 Identities=19% Similarity=0.249 Sum_probs=48.7
Q ss_pred EEEEEEcCCCCcHHHHH-HHHHHHhcccCce-EEEEeeccccccccCCHHHHHHHHHHhh-hccc-cccC-CCC------
Q 001407 8 QIVGIWGMGGIGKTTLA-KAIFDQFSHEFEG-SCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEK-LEVA-GPN------ 76 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA-~~~~~~~~~~F~~-~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~-~~~~-~~~------ 76 (1083)
+-++|.|..|+|||||| ..+.++.. -+. ++|+ .+++.. ..+.++.+.+...- .... .-.. ..+
T Consensus 163 QR~~Ifg~~g~GKT~Lal~~I~~q~~--~dv~~V~~-~IGeR~---rev~e~i~~l~~~~~l~~tvvV~atsd~p~~~r~ 236 (497)
T TIGR03324 163 QRELILGDRQTGKTAIAIDTILNQKG--RNVLCIYC-AIGQRA---SAVAKVVANLREHGAMDYTIVVVTEGNDPPGLQY 236 (497)
T ss_pred CEEEeecCCCCCHHHHHHHHHHHhcC--CCcEEEEE-EeccCc---HHHHHHHHHhhhcCCcceeEEEEeCCCCCHHHHH
Confidence 56899999999999997 46777642 344 3444 344332 33455555555441 1111 0000 000
Q ss_pred ----chHHHHHHh--cCceeEEEEeCCCChH
Q 001407 77 ----IPHFTKERV--RRMKLLIVLDDVNEVG 101 (1083)
Q Consensus 77 ----~~~~~~~~l--~~kr~LlVlDdv~~~~ 101 (1083)
..-.+-+++ +++++|+|+||+....
T Consensus 237 ~ap~~a~aiAEyfrd~G~~VLlv~DdlTr~A 267 (497)
T TIGR03324 237 IAPYAATSIGEHFMEQGRDVLIVYDDLTQHA 267 (497)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEcChhHHH
Confidence 112233333 5789999999996544
No 468
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=92.98 E-value=0.63 Score=58.10 Aligned_cols=114 Identities=13% Similarity=0.148 Sum_probs=59.9
Q ss_pred CceeEEEEeCCCC---hHHHHH----HhhccCCCCCCcEEEEEecchhHHhhhccc-cccEEEecCCCHHHHHHHHHHhh
Q 001407 87 RMKLLIVLDDVNE---VGQLKR----LIGELDQFGQGSRIVVTTRDKRVLEKFRGE-EKKIYRVNGLEFEEAFEHFCNFA 158 (1083)
Q Consensus 87 ~kr~LlVlDdv~~---~~~~~~----l~~~~~~~~~gsrIiiTTR~~~v~~~~~~~-~~~~~~v~~L~~~ea~~Lf~~~a 158 (1083)
..+-|+++|..-. +..-.. +...+. ..|+.+|+||.+.++....... ....+.+. ++. +... +. +-
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~-~d~-~~l~-~~-Yk 479 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVE-FDE-ETLR-PT-YR 479 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEE-Eec-CcCc-EE-EE
Confidence 4677999998742 222222 222222 2478999999998877654310 11112221 111 1111 11 11
Q ss_pred cCCCCCCchhHHHHHHHHHhhCCCchhHHHHhhhhcCCCHHHHHHHHHHHhh
Q 001407 159 FKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNR 210 (1083)
Q Consensus 159 ~~~~~~~~~~~~l~~~i~~~~~glPLal~~l~~~L~~~~~~~w~~~l~~l~~ 210 (1083)
+....+. ...|-+|++.+ |+|-.+.--|..+.+....+++..+.++..
T Consensus 480 l~~G~~g---~S~a~~iA~~~-Glp~~ii~~A~~~~~~~~~~~~~li~~l~~ 527 (782)
T PRK00409 480 LLIGIPG---KSNAFEIAKRL-GLPENIIEEAKKLIGEDKEKLNELIASLEE 527 (782)
T ss_pred EeeCCCC---CcHHHHHHHHh-CcCHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 1122222 22366777776 788887777777766655566666666543
No 469
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.95 E-value=0.68 Score=50.49 Aligned_cols=33 Identities=33% Similarity=0.395 Sum_probs=27.7
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcccCceE
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGS 38 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~ 38 (1083)
..+-|.++|++|.|||-+|++++.+....|-.+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv 158 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEAGANFINV 158 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHcCCCccee
Confidence 456789999999999999999999877766543
No 470
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=92.95 E-value=0.12 Score=55.52 Aligned_cols=35 Identities=29% Similarity=0.360 Sum_probs=30.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEee
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSD 43 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~ 43 (1083)
++|+|+|.+|+|||||+.++...++++. .++.+..
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKh 36 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKH 36 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEE
Confidence 5899999999999999999999988876 5666653
No 471
>PRK05439 pantothenate kinase; Provisional
Probab=92.94 E-value=0.1 Score=56.83 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=26.1
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
....+.+|||.|.+|+||||+|+.+...+..
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~ 112 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSR 112 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3456789999999999999999999886543
No 472
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=92.93 E-value=0.11 Score=56.82 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=26.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeec
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDV 44 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~ 44 (1083)
|+|+|+|-||+||||+|..++.-+..+= ..+.+.+.
T Consensus 1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G-~~VlliD~ 36 (275)
T TIGR01287 1 RQIAIYGKGGIGKSTTTQNIAAALAEMG-KKVMIVGC 36 (275)
T ss_pred CeeEEeCCCcCcHHHHHHHHHHHHHHCC-CeEEEEeC
Confidence 5799999999999999999998665542 23444333
No 473
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.90 E-value=0.13 Score=55.88 Aligned_cols=106 Identities=16% Similarity=0.128 Sum_probs=60.4
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-+.|.|.|..|.||||+++++...+...-...+-+.+..+..-. . . ........ .......+.++..|+
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~-----~----~-~~~~~~~~-~~~~~~~~~l~~~LR 195 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLP-----G----P-NQIQIQTR-RDEISYEDLLKSALR 195 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--S-----C----S-SEEEEEEE-TTTBSHHHHHHHHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeec-----c----c-ceEEEEee-cCcccHHHHHHHHhc
Confidence 47899999999999999999998765552333444432222111 0 0 00000000 122334477888888
Q ss_pred CceeEEEEeCCCChHHHHHHhhccCCCCCCcEE-EEEecchh
Q 001407 87 RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRI-VVTTRDKR 127 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsrI-iiTTR~~~ 127 (1083)
...=.||++.+.+.+.++.+. .. ..|..+ +-|.....
T Consensus 196 ~~pD~iiigEiR~~e~~~~~~-a~---~tGh~~~~tT~Ha~s 233 (270)
T PF00437_consen 196 QDPDVIIIGEIRDPEAAEAIQ-AA---NTGHLGSLTTLHANS 233 (270)
T ss_dssp S--SEEEESCE-SCHHHHHHH-HH---HTT-EEEEEEEE-SS
T ss_pred CCCCcccccccCCHhHHHHHH-hh---ccCCceeeeeeecCC
Confidence 888899999999998877733 32 347777 55544333
No 474
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=92.88 E-value=0.5 Score=53.03 Aligned_cols=24 Identities=33% Similarity=0.607 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.++||.|+.|.|||||.+.+...+
T Consensus 68 ei~gLlGpNGaGKSTLl~~L~Gl~ 91 (340)
T PRK13536 68 ECFGLLGPNGAGKSTIARMILGMT 91 (340)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 689999999999999999998743
No 475
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=92.88 E-value=0.11 Score=56.39 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCeEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 5 ~~~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
..+.+|||.|..|+||||+|+.+...+.
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4578999999999999999988876554
No 476
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=92.86 E-value=0.4 Score=47.64 Aligned_cols=22 Identities=45% Similarity=0.502 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
-|.|+|..|+||+.+|+.+++.
T Consensus 24 pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 24 PVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp -EEEECSTTSSHHHHHHHHHHC
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 4669999999999999999984
No 477
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=92.86 E-value=1.7 Score=54.19 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=25.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
.-|.|+|..|+|||++|+.+++.-...-...+.+.
T Consensus 400 ~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~ 434 (686)
T PRK15429 400 STVLILGETGTGKELIARAIHNLSGRNNRRMVKMN 434 (686)
T ss_pred CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEe
Confidence 35889999999999999999985432223333443
No 478
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=92.85 E-value=0.092 Score=50.02 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+|.|-|++|.||||+|+.++....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC
Confidence 689999999999999999998753
No 479
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.83 E-value=0.076 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.614 Sum_probs=21.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
++|+|+|+.|+||||||+.++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 589999999999999999999754
No 480
>PRK13236 nitrogenase reductase; Reviewed
Probab=92.82 E-value=0.15 Score=56.12 Aligned_cols=32 Identities=22% Similarity=0.582 Sum_probs=27.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhccc
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHE 34 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~ 34 (1083)
.+++.|+|++.|-||+||||+|..++..+..+
T Consensus 2 ~~~~~~~~~~~GKGGVGKTt~a~NLA~~La~~ 33 (296)
T PRK13236 2 TDENIRQIAFYGKGGIGKSTTSQNTLAAMAEM 33 (296)
T ss_pred CCcCceEEEEECCCcCCHHHHHHHHHHHHHHC
Confidence 35678999999999999999999988866554
No 481
>PRK13975 thymidylate kinase; Provisional
Probab=92.82 E-value=0.1 Score=53.68 Aligned_cols=26 Identities=31% Similarity=0.481 Sum_probs=23.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
.+|+|.|+.|+||||+|+.++.++..
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 58999999999999999999998754
No 482
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.81 E-value=0.2 Score=55.37 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=62.6
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccccCCHHHHHHHHHHhhhccccccCCCCchHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAGPNIPHFTKERVR 86 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l~~~~~~~~~~~~~~~~~~~l~ 86 (1083)
-..|+|.|..|.||||+++++...+.... ..+.+.+..+..........+ . ..............+.+...++
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~~~~~~l----~--~~~~~~~~~~~~~~~~l~~~Lr 216 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPHPNYVHL----F--YSKGGQGLAKVTPKDLLQSCLR 216 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCCCCEEEE----E--ecCCCCCcCccCHHHHHHHHhc
Confidence 46899999999999999999988664432 344444333322110000000 0 0000001112233466777788
Q ss_pred CceeEEEEeCCCChHHHHHHhhccCCCCCCcE-EEEEecchhHH
Q 001407 87 RMKLLIVLDDVNEVGQLKRLIGELDQFGQGSR-IVVTTRDKRVL 129 (1083)
Q Consensus 87 ~kr~LlVlDdv~~~~~~~~l~~~~~~~~~gsr-IiiTTR~~~v~ 129 (1083)
...=.+|+|.+.+.+.++.+ ..... |.. ++.|+......
T Consensus 217 ~~pd~ii~gE~r~~e~~~~l-~a~~~---g~~~~i~T~Ha~~~~ 256 (308)
T TIGR02788 217 MRPDRIILGELRGDEAFDFI-RAVNT---GHPGSITTLHAGSPE 256 (308)
T ss_pred CCCCeEEEeccCCHHHHHHH-HHHhc---CCCeEEEEEeCCCHH
Confidence 88888999999987766543 33332 332 46666655433
No 483
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=92.81 E-value=0.35 Score=51.40 Aligned_cols=23 Identities=35% Similarity=0.538 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.+++|.|..|.|||||.+.++..
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~ 49 (237)
T TIGR00968 27 SLVALLGPSGSGKSTLLRIIAGL 49 (237)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 58999999999999999999864
No 484
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=92.80 E-value=0.41 Score=52.70 Aligned_cols=26 Identities=35% Similarity=0.445 Sum_probs=22.3
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
-+.++|.|..|.|||||++.+.....
T Consensus 69 Gqri~I~G~sG~GKTtLl~~Ia~~~~ 94 (326)
T cd01136 69 GQRLGIFAGSGVGKSTLLGMIARGTT 94 (326)
T ss_pred CcEEEEECCCCCChHHHHHHHhCCCC
Confidence 35789999999999999998887654
No 485
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=92.78 E-value=0.092 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=21.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
+=|.++|+.|+|||++++.+..+..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~ 58 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLD 58 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCST
T ss_pred CcEEEECCCCCchhHHHHhhhccCC
Confidence 4578999999999999999887543
No 486
>PRK14738 gmk guanylate kinase; Provisional
Probab=92.76 E-value=0.11 Score=53.75 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.2
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHH
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
.....++|.|.|++|+|||||++++...
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4456789999999999999999999754
No 487
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=92.75 E-value=1.7 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.299 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
-|.|+|-.|+||+++|+.++..
T Consensus 31 pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 31 PVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CEEEECCCCCcHHHHHHHHHHh
Confidence 4789999999999999999864
No 488
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=92.74 E-value=0.31 Score=59.72 Aligned_cols=22 Identities=41% Similarity=0.584 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFD 29 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~ 29 (1083)
..|+|+|..|.|||||||-+..
T Consensus 500 e~vaIvG~SGsGKSTL~KLL~g 521 (709)
T COG2274 500 EKVAIVGRSGSGKSTLLKLLLG 521 (709)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999865
No 489
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.74 E-value=0.12 Score=52.64 Aligned_cols=34 Identities=26% Similarity=0.156 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEe
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVS 42 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~ 42 (1083)
++.|.|.+|+|||++|.++......+-..++|+.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s 34 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT 34 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 4789999999999999999876544446677775
No 490
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.74 E-value=0.33 Score=49.65 Aligned_cols=24 Identities=38% Similarity=0.393 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFS 32 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~ 32 (1083)
++.|.|.+|+||||++..++..+.
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 788999999999999999988654
No 491
>TIGR01041 ATP_syn_B_arch ATP synthase archaeal, B subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=92.73 E-value=0.36 Score=55.69 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=50.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcc--cC-ceEEEEeeccccccccCCHHHHHHHHHHhh-hccccc-cCCC-------
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSH--EF-EGSCFVSDVRGNSETAGGLEHLQKQMLSTT-LSEKLE-VAGP------- 75 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~--~F-~~~~~~~~~~~~~~~~~~l~~l~~~ll~~l-~~~~~~-~~~~------- 75 (1083)
+-++|.|-+|+|||||+..+.++... .+ +.++-+..+++.. ..+.++.+.+...- .....- ....
T Consensus 142 QR~gIfgg~G~GKs~L~~~ia~~~~ad~~~~~~v~V~~~iGERg---rEv~efi~~~~~~~~l~rtvvv~atsd~p~~~R 218 (458)
T TIGR01041 142 QKLPIFSGSGLPHNELAAQIARQATVRGEESEFAVVFAAMGITY---EEANFFMKDFEETGALERAVVFLNLADDPAVER 218 (458)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHhhcccCCCCceEEEEEEccccc---hHHHHHHHHHHhcCCcceEEEEEECCCCCHHHH
Confidence 56899999999999999999885431 11 1223233343332 33455555555431 111110 0110
Q ss_pred ----CchHHHHHHhc---CceeEEEEeCCCChH
Q 001407 76 ----NIPHFTKERVR---RMKLLIVLDDVNEVG 101 (1083)
Q Consensus 76 ----~~~~~~~~~l~---~kr~LlVlDdv~~~~ 101 (1083)
...-.+.++++ +++||+++||+....
T Consensus 219 ~~a~~~a~tiAEyfr~d~G~~VLli~DslTR~A 251 (458)
T TIGR01041 219 IVTPRMALTAAEYLAFEKDMHVLVILTDMTNYC 251 (458)
T ss_pred HHHHHHHHHHHHHHHHccCCcEEEEEcChhHHH
Confidence 01223444444 679999999996544
No 492
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=92.72 E-value=0.51 Score=50.90 Aligned_cols=24 Identities=33% Similarity=0.670 Sum_probs=21.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.+++|.|+.|.|||||++.++...
T Consensus 51 e~~~liG~NGsGKSTLlk~L~Gl~ 74 (264)
T PRK13546 51 DVIGLVGINGSGKSTLSNIIGGSL 74 (264)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 579999999999999999998754
No 493
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=92.72 E-value=0.14 Score=45.38 Aligned_cols=25 Identities=36% Similarity=0.643 Sum_probs=22.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 9 IVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 9 vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
++.+.|.+|+||||+|..++..+++
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~ 25 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAK 25 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999998765
No 494
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=92.69 E-value=0.5 Score=56.42 Aligned_cols=24 Identities=38% Similarity=0.599 Sum_probs=20.8
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHH
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
..-|.|+|.+|+|||++|+.+++.
T Consensus 86 ~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 86 PQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred CceEEEECCCCCCHHHHHHHHHHH
Confidence 345789999999999999999874
No 495
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=92.69 E-value=0.16 Score=49.80 Aligned_cols=28 Identities=32% Similarity=0.527 Sum_probs=24.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhcccC
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQFSHEF 35 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~~~~F 35 (1083)
++|+|+|..|.|||||+.++...+..+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999876553
No 496
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.68 E-value=1.6 Score=42.17 Aligned_cols=24 Identities=46% Similarity=0.702 Sum_probs=21.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQF 31 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~~ 31 (1083)
.|.||+|-.|.|||||...+..++
T Consensus 33 eVLgiVGESGSGKtTLL~~is~rl 56 (258)
T COG4107 33 EVLGIVGESGSGKTTLLKCISGRL 56 (258)
T ss_pred cEEEEEecCCCcHHhHHHHHhccc
Confidence 489999999999999999887654
No 497
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=92.65 E-value=0.33 Score=59.44 Aligned_cols=23 Identities=39% Similarity=0.455 Sum_probs=20.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 001407 8 QIVGIWGMGGIGKTTLAKAIFDQ 30 (1083)
Q Consensus 8 ~vv~I~G~gGiGKTtLA~~~~~~ 30 (1083)
..|+|+|..|.|||||++.+...
T Consensus 362 ~~v~IvG~sGsGKSTLl~lL~gl 384 (588)
T PRK13657 362 QTVAIVGPTGAGKSTLINLLQRV 384 (588)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 498
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.62 E-value=0.52 Score=47.82 Aligned_cols=28 Identities=25% Similarity=0.432 Sum_probs=24.5
Q ss_pred CeEEEEEEcCCCCcHHHHHHHHHHHhcc
Q 001407 6 TVQIVGIWGMGGIGKTTLAKAIFDQFSH 33 (1083)
Q Consensus 6 ~~~vv~I~G~gGiGKTtLA~~~~~~~~~ 33 (1083)
...+|.|.|.+|.||||+|+.+...+..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999987643
No 499
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=92.62 E-value=0.11 Score=52.79 Aligned_cols=30 Identities=27% Similarity=0.478 Sum_probs=25.0
Q ss_pred eEEEEEEcCCCCcHHHHHHHHHHHhcccCc
Q 001407 7 VQIVGIWGMGGIGKTTLAKAIFDQFSHEFE 36 (1083)
Q Consensus 7 ~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~ 36 (1083)
.++|.|+|++|+||+|++.++.......|.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~ 31 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE 31 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence 478999999999999999999987544443
No 500
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=92.61 E-value=0.19 Score=53.06 Aligned_cols=47 Identities=23% Similarity=0.344 Sum_probs=34.9
Q ss_pred CCCCeEEEEEEcCCCCcHHHHHHHHHHHhcccCceEEEEeeccccccc
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQFSHEFEGSCFVSDVRGNSET 50 (1083)
Q Consensus 3 ~~~~~~vv~I~G~gGiGKTtLA~~~~~~~~~~F~~~~~~~~~~~~~~~ 50 (1083)
..++..+|||.|.||+|||||.-++..++..+-..+.-+ .+...|+.
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVl-AVDPSSp~ 93 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVL-AVDPSSPF 93 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEE-EECCCCCC
Confidence 456778999999999999999999998876654433333 45555554
Done!