Query 001407
Match_columns 1083
No_of_seqs 555 out of 5704
Neff 9.3
Searched_HMMs 29240
Date Tue Mar 26 16:56:17 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001407.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_708-712//hhsearch_pdb/001407hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 1.0 1 1 342.3 32.7 340 394-742 199-555 (768)
2 3rgz_A Protein brassinosteroid 1.0 1 1 332.8 30.6 409 395-813 126-563 (768)
3 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 332.2 20.9 281 4-300 149-473 (549)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 312.3 18.8 282 3-299 143-453 (1249)
5 3t6q_A CD180 antigen; protein- 1.0 1 1 298.0 32.1 485 331-851 36-560 (606)
6 3vq2_A TLR4, TOLL-like recepto 1.0 1 1 294.7 30.5 482 332-851 36-558 (606)
7 4ecn_A Leucine-rich repeat pro 1.0 1 1 292.1 26.9 382 330-715 325-787 (876)
8 4eco_A Uncharacterized protein 1.0 1 1 291.7 26.6 385 326-715 81-547 (636)
9 1vt4_I APAF-1 related killer D 1.0 1 1 287.3 14.4 276 5-318 148-458 (1221)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 286.4 38.6 413 395-819 57-507 (606)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=342.25 Aligned_cols=340 Identities=18% Similarity=0.200 Sum_probs=217.4
Q ss_pred CCCCCEEECCCCCCCCCCCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 989827974899999899999-9999529986788654556887533585201587786881668857743699888899
Q 001407 394 PKKLRYLHWDTYPLRTLPSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSNLHFVC 472 (1083)
Q Consensus 394 ~~~Lr~L~l~~~~l~~lp~~~-~~~~L~~L~L~~~~i~~lw~~~~~~~p~~i~~l~~L~~L~L~~~~~l~~lp~~~~~~~ 472 (1083)
..+|++|++.++.+...++.+ .+.+|++|++++|.+... +|..++.+++|++|++++|.....+|.. .+++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-------~~~~l~~l~~L~~L~Ls~n~l~~~~~~~-~l~~ 270 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-------FSRAISTCTELKLLNISSNQFVGPIPPL-PLKS 270 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-------HHHHTTTCSSCCEEECCSSCCEESCCCC-CCTT
T ss_pred CCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCC-------CCHHHHCCCCCCEEECCCCCCCCCCCCC-CCCC
T ss_conf 7868989892882788771112699999897948858781-------6577744888898989888665716724-3687
Q ss_pred CCEEEECCCCCCCCCCCCC----CCCCEEECCCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCCCC-CCCCCCCCEEEC
Q ss_conf 9399805976865358776----88228973784564-34911129998769986289896434211-148888858860
Q 001407 473 PVTINFSYCVNLIEFPQIS----GKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTS-FCKLRSLVTLIL 546 (1083)
Q Consensus 473 L~~L~l~~c~~l~~~p~~~----~~l~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~-l~~l~~L~~L~L 546 (1083)
|+.|++++|.....+|... .++++|+++++.+. .+|..++.+++|+.|++++|.....+|.. ++.+++|++|++
T Consensus 271 L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~L 350 (768)
T 3rgz_A 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDL 350 (768)
T ss_dssp CCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEEC
T ss_pred CCEEECCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEEC
T ss_conf 89897917855772588888446868899896896778423677558776677897885257379788724888878848
Q ss_pred CCCCCCCCCCHHHHHCC-CCCEECCCCCCCC-CCCCCCCC--CCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCC
Q ss_conf 68757666716666112-3573135777887-78943689--99996995267778766887768983125630145456
Q 001407 547 LGCLNLEHFPEILEKME-HLKRIYSDRTPIT-ELPSSFEN--LPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAI 622 (1083)
Q Consensus 547 ~~c~~l~~~p~~l~~l~-~L~~L~l~~~~i~-~lp~~i~~--l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~~~~ 622 (1083)
++|.....+|..+..++ +|+.|+++++.+. .+|..+.. +++|+.|++++|...+.+|..++.+++|+.|++++|.+
T Consensus 351 s~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l 430 (768)
T 3rgz_A 351 SFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430 (768)
T ss_dssp CSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEE
T ss_pred CCCCCCCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCC
T ss_conf 47843762309898632277199862787478767666533247761898977846542487775689879898958846
Q ss_pred C-CCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCHHCCCCCCCCEEEEECCCCC-CCCHH
Q ss_conf 6-798000114676599868899998767111369999649990489777-67510249989859992078886-56432
Q 001407 623 S-QLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFE-SLPAI 699 (1083)
Q Consensus 623 ~-~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~ 699 (1083)
. ..|..+..+++|+.|++++|...+..+.. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|.+
T Consensus 431 ~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~ 509 (768)
T 3rgz_A 431 SGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE-LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW 509 (768)
T ss_dssp ESCCCGGGGGCTTCCEEECCSSCCCSCCCGG-GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHH-HCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHH
T ss_conf 6854677744998898989788154718978-828777329990199513758878816998998975399518968768
Q ss_pred HHCCCCCCEEECCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCC
Q ss_conf 20899877861567646777898---89885499630787887578
Q 001407 700 IKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLP 742 (1083)
Q Consensus 700 l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~l~~c~~l~~l~ 742 (1083)
++.+++|+.|++++|...+.+|. ..++|+.|++.+|.....+|
T Consensus 510 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip 555 (768)
T 3rgz_A 510 IGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP 555 (768)
T ss_dssp GGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred HHCCCCCCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCC
T ss_conf 8568999989897894337488777088989989898884688279
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=332.78 Aligned_cols=409 Identities=18% Similarity=0.172 Sum_probs=204.4
Q ss_pred CCCCEEECCCCCCC-CCCCC--CCCCCCEEEECCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEECCCCCCCCCCCCCC
Q ss_conf 89827974899999-89999--999995299867886545568875335852---0158778688166885774369988
Q 001407 395 KKLRYLHWDTYPLR-TLPSN--FKPKNLVELNLRCSKVEQPWEGEKACVPSS---IQNFKYLSALSFKGCQSLRSFPSNL 468 (1083)
Q Consensus 395 ~~Lr~L~l~~~~l~-~lp~~--~~~~~L~~L~L~~~~i~~lw~~~~~~~p~~---i~~l~~L~~L~L~~~~~l~~lp~~~ 468 (1083)
.+|++|++++|.+. ..|.. .++.+|++|++++|.+... .+.. +.++++|++|++++|......|. .
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~ 197 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGA-------NVVGWVLSDGCGELKHLAISGNKISGDVDV-S 197 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEE-------THHHHHHTTCCTTCCEEECCSSEEESCCBC-T
T ss_pred CCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCC-------CCHHHHHHCCCCCCCEEECCCCCCCCCCCC-C
T ss_conf 89998989688267747977856388999898979835885-------871556643589889898978803465784-5
Q ss_pred CCCCCCEEEECCCCCCCCCCCC--CCCCCEEECCCCCCC-CCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 8899939980597686535877--688228973784564-3491112999876998628989643421114888885886
Q 001407 469 HFVCPVTINFSYCVNLIEFPQI--SGKVTRLYLGQSAIE-EVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLI 545 (1083)
Q Consensus 469 ~~~~L~~L~l~~c~~l~~~p~~--~~~l~~L~L~~~~l~-~lp~si~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~ 545 (1083)
.+++|+.|++++|......|.+ ..++++|+++++.+. .+|..+..+++|+.|++++|.....+|. . .+++|++|+
T Consensus 198 ~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~-~-~l~~L~~L~ 275 (768)
T 3rgz_A 198 RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP-L-PLKSLQYLS 275 (768)
T ss_dssp TCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCC-C-CCTTCCEEE
T ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCC-C-CCCCCCEEE
T ss_conf 47868989892882788771112699999897948858781657774488889898988866571672-4-368789897
Q ss_pred CCCCCCCCCCCHHHHHC-CCCCEECCCCCCCC-CCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCCCHHHHHHCCCCCC
Q ss_conf 06875766671666611-23573135777887-78943689999969952677787668877-68983125630145456
Q 001407 546 LLGCLNLEHFPEILEKM-EHLKRIYSDRTPIT-ELPSSFENLPGLEVLFVEDCSKLDNLPDN-IGSLEYLYYILAAASAI 622 (1083)
Q Consensus 546 L~~c~~l~~~p~~l~~l-~~L~~L~l~~~~i~-~lp~~i~~l~~L~~L~l~~c~~~~~lp~~-l~~l~~L~~L~l~~~~~ 622 (1083)
+++|...+.+|..+... ++|++|+++++.+. .+|..+..+++|+.|++++|...+.+|.. ++.+++|+.|++++|.+
T Consensus 276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l 355 (768)
T 3rgz_A 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355 (768)
T ss_dssp CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred CCCCCCCCCCCHHHHHHCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCC
T ss_conf 91785577258888844686889989689677842367755877667789788525737978872488887884847843
Q ss_pred C-CCCCHHHCCC-CCCEEECCCCCCCCCCCCCCC-CCCCCCCEEEECCCCCC-CCCHHCCCCCCCCEEEEECCCCC-CCC
Q ss_conf 6-7980001146-765998688999987671113-69999649990489777-67510249989859992078886-564
Q 001407 623 S-QLPSSVALSN-MLRSLDSSHCKGLESFPRTFL-LGLSAMGLLHISDYAVR-EIPQEIAYLSSLEILYLSGNNFE-SLP 697 (1083)
Q Consensus 623 ~-~l~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~-~lp~~l~~l~~L~~L~L~~n~l~-~lp 697 (1083)
. .+|..+..++ +|+.|++++|...+..+.... ..++.|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|
T Consensus 356 ~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p 435 (768)
T 3rgz_A 356 SGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIP 435 (768)
T ss_dssp EECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCC
T ss_pred CCCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCC
T ss_conf 76230989863227719986278747876766653324776189897784654248777568987989895884668546
Q ss_pred HHHHCCCCCCEEECCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCCC---CCCCCCEEEECCCCCCCCCCC---CCCC
Q ss_conf 3220899877861567646777898---898854996307878875789---999976796329889766799---8988
Q 001407 698 AIIKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRSLPE---LPLC 768 (1083)
Q Consensus 698 ~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~~l~~~~~---~~~~ 768 (1083)
..+..+++|+.|++++|.....+|. ..++|+.|++.+|.....+|. ..++|+.|++++|...+.+|. .+++
T Consensus 436 ~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 515 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCHHHCCCCCCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 77744998898989788154718978828777329990199513758878816998998975399518968768856899
Q ss_pred CCEEECCCCCCCCCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCC
Q ss_conf 648962478897767975---544542313355676865033312432
Q 001407 769 LQYLNLEDCNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQE 813 (1083)
Q Consensus 769 L~~L~L~~c~~l~~lp~~---~~sL~~L~i~~c~~L~~lp~~l~~L~~ 813 (1083)
|+.|++++|...+.+|.. +++|+.|++.+|+....+|..+..+..
T Consensus 516 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~ 563 (768)
T 3rgz_A 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563 (768)
T ss_dssp CCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTT
T ss_pred CCEEECCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCHHHHCCCC
T ss_conf 998989789433748877708898998989888468827957860421
No 3
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=332.18 Aligned_cols=281 Identities=16% Similarity=0.146 Sum_probs=219.0
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHH----HHCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCCC-C
Q ss_conf 99859999985999928999999999----83026722799731344333468878999999974201343--55799-9
Q 001407 4 SDTVQIVGIWGMGGIGKTTLAKAIFD----QFSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKL--EVAGP-N 76 (1083)
Q Consensus 4 ~~~~~vi~I~G~gGiGKTtLA~~~~~----~~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~~l~~l~~~~~--~~~~~-~ 76 (1083)
..++++|+|+|||||||||||+++|+ +++.+|+.++|+. ++..+. .++..+.+.++..+..... ..... .
T Consensus 149 ~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~-vs~~~~--~~~~~~~~~il~~l~~~~~~~~~~~~~~ 225 (549)
T 2a5y_B 149 DLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK-DSGTAP--KSTFDLFTDILLMLKSEDDLLNFPSVEH 225 (549)
T ss_dssp TSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE-CCCCST--THHHHHHHHHHHHHTTTSCCTTCCCCTT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCC--CCHHHHHHHHHHHHHCCCCCCCCCCCCC
T ss_conf 7896289998699998899999999840698746699579999-789878--7999999999999853755345555331
Q ss_pred -----CHHHHHHHHCCC-EEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEECCCCHHHH
Q ss_conf -----617899974074-16999808999288999960227789996999991643577630366321898069998779
Q 001407 77 -----IPHFTKERVRRM-KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVNGLEFEEA 150 (1083)
Q Consensus 77 -----~~~~~~~~l~~k-k~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~~L~~~ea 150 (1083)
+...+++.+.++ |+||||||||+.+++ .+.. .+||+||||||++.++..++. ...+|++++|+.++|
T Consensus 226 ~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~-~~~~~~l~~L~~~ea 298 (549)
T 2a5y_B 226 VTSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQ-TCEFIEVTSLEIDEC 298 (549)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCS-CEEEEECCCCCHHHH
T ss_pred CCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHH-CCCC-----CCCCEEEEECCCHHHHHHCCC-CCEEEECCCCCHHHH
T ss_conf 469999999999976898489999799971441-5432-----699889997497799997088-973898999898999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHH-HHHHCCCCHHHHHHHHHHCCCC
Q ss_conf 999978530899999115899999997518992057888643068888789999998-7420375403478576411038
Q 001407 151 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHD-LNRICESEIHDIYDILKISFNK 229 (1083)
Q Consensus 151 ~~lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPlal~~l~~~L~~~~~~~w~~~l~~-l~~~~~~~~~~i~~~l~~sy~~ 229 (1083)
++||.++||.... .+.+.+++++|+++|+|+|||++++|+.++.+. .+|...+.. ++..... ++..++++||+.
T Consensus 299 ~~Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~---~i~~~l~~Sy~~ 373 (549)
T 2a5y_B 299 YDFLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLV---GVECITPYSYKS 373 (549)
T ss_dssp HHHHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSS---TTCCCSSSSSSS
T ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCH-HHHHHHHHHHHHCCCHH---HHHHHHHCCCCC
T ss_conf 9999987448998-556899999999995998399999999844344-89998757876136477---789897516202
Q ss_pred CCCCCCCEEE-----------EEEECCCCCCHHHHHHHHHH---------------HHHHHHHHHHHCCCEEEE----CC
Q ss_conf 8900225177-----------99512489875699999834---------------257666887504536983----99
Q 001407 230 LTPRVKSIFL-----------DIACFFEGEDKDFVASILDD---------------SESDVLDILIDKSLVSIS----GN 279 (1083)
Q Consensus 230 L~~~~k~~fl-----------~~a~f~~~~~~~~~~~~l~~---------------~~~~~l~~L~~~sLi~~~----~~ 279 (1083)
|+.+.|.||+ |||+||+++.++ +..|.+. .+..++++|++++|++.. ..
T Consensus 374 L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~-i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~ 452 (549)
T 2a5y_B 374 LAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP-VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVL 452 (549)
T ss_dssp HHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE-HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSC
T ss_pred CCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE-EEEEEEECCCEECCCCCCCCHHHHHHHHHHHHHCCCEEEECCCCCE
T ss_conf 267999997526522336743235608997666-5331101355002677899999999999999875883671479804
Q ss_pred EEEEEHHHHHHHHHHHHHCCC
Q ss_conf 798208899999999731043
Q 001407 280 FLNMHDILQEMGRQIVRQESE 300 (1083)
Q Consensus 280 ~~~mH~li~~~~~~i~~~e~~ 300 (1083)
+|.|||++|++|++++++++.
T Consensus 453 ~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 453 TFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp EEECCHHHHHHHHTTSCTHHH
T ss_pred EEEECHHHHHHHHHHHHHHHH
T ss_conf 999676999999999889899
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=312.31 Aligned_cols=282 Identities=23% Similarity=0.315 Sum_probs=213.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHH---HCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCCCCC-CC--
Q ss_conf 9998599999859999289999999998---30267227997313443334688789999999742013435579-99--
Q 001407 3 SSDTVQIVGIWGMGGIGKTTLAKAIFDQ---FSHEFEGSCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKLEVAG-PN-- 76 (1083)
Q Consensus 3 ~~~~~~vi~I~G~gGiGKTtLA~~~~~~---~~~~F~~~~~~~~~~~~s~~~~~l~~l~~~~l~~l~~~~~~~~~-~~-- 76 (1083)
.++++++|+|+||||+||||||+++|++ ...+|...+||..++.... ..+......+...+......... ..
T Consensus 143 ~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 220 (1249)
T 3sfz_A 143 LNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDK--SGLLMKLQNLCMRLDQEESFSQRLPLNI 220 (1249)
T ss_dssp TTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCH--HHHHHHHHHHHHHHTTTCTTCSSCCSSH
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCH
T ss_conf 35887779999189888889999986075678862788179999788572--6799999999998655303334788777
Q ss_pred --CHHHHHHHHCCC--EEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHH-HCCCCCCEEEECC-CCHHHH
Q ss_conf --617899974074--1699980899928899996022778999699999164357763-0366321898069-998779
Q 001407 77 --IPHFTKERVRRM--KLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEK-FRGEEKKIYRVNG-LEFEEA 150 (1083)
Q Consensus 77 --~~~~~~~~l~~k--k~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~-~~~~~~~~~~l~~-L~~~ea 150 (1083)
+...++..+.++ |+||||||||+..+|+.+ ++||+||||||++.++.. .+ ....++++. |+++||
T Consensus 221 ~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~--~~~~~~~~~~l~~~~a 291 (1249)
T 3sfz_A 221 EEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMG--PKHVVPVESGLGREKG 291 (1249)
T ss_dssp HHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCS--CBCCEECCSSCCHHHH
T ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-------CCCCEEEEECCCHHHHHHHCC--CCEEEEECCCCCHHHH
T ss_conf 8999999999735678789999567997788763-------689789999277899876348--8437982588887889
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCC--------HHHHHHH
Q ss_conf 99997853089999911589999999751899205788864306888878999999874203754--------0347857
Q 001407 151 FEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLKRKSHWGKVLHDLNRICESE--------IHDIYDI 222 (1083)
Q Consensus 151 ~~lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPlal~~l~~~L~~~~~~~w~~~l~~l~~~~~~~--------~~~i~~~ 222 (1083)
++||...++.. .+.+.+.+++|+++|+|+|||++++|++|+.+. ..|+.+++++....... ..++..+
T Consensus 292 ~~l~~~~~~~~---~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (1249)
T 3sfz_A 292 LEILSLFVNMK---KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEA 367 (1249)
T ss_dssp HHHHHHHHTSC---STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHH
T ss_pred HHHHHHHHCCC---HHHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999865798---134838899999984997799999999862480-57999999986504430346556446779999
Q ss_pred HHHCCCCCCCCCCCEEEEEEECCCCCCHH--HHHHHHH---HHHHHHHHHHHHCCCEEEE-CC---EEEEEHHHHHHHHH
Q ss_conf 64110388900225177995124898756--9999983---4257666887504536983-99---79820889999999
Q 001407 223 LKISFNKLTPRVKSIFLDIACFFEGEDKD--FVASILD---DSESDVLDILIDKSLVSIS-GN---FLNMHDILQEMGRQ 293 (1083)
Q Consensus 223 l~~sy~~L~~~~k~~fl~~a~f~~~~~~~--~~~~~l~---~~~~~~l~~L~~~sLi~~~-~~---~~~mH~li~~~~~~ 293 (1083)
+.+||+.|++++|.||++||+||+++.++ .+...+. ..++.++..|++++|++.. ++ +|+||+++|+++++
T Consensus 368 l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~ 447 (1249)
T 3sfz_A 368 MSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTE 447 (1249)
T ss_dssp HHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHH
T ss_conf 99899867999999999728137997518999998858988899999999974463389637981189966899999874
Q ss_pred HHHHCC
Q ss_conf 973104
Q 001407 294 IVRQES 299 (1083)
Q Consensus 294 i~~~e~ 299 (1083)
..+++.
T Consensus 448 ~~~~~~ 453 (1249)
T 3sfz_A 448 KNRSQL 453 (1249)
T ss_dssp HTGGGH
T ss_pred HHHHHH
T ss_conf 506789
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=298.01 Aligned_cols=485 Identities=18% Similarity=0.140 Sum_probs=306.6
Q ss_pred EEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC
Q ss_conf 88205765344339232239999735865168532123588874000024422555998888998982797489999989
Q 001407 331 IFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL 410 (1083)
Q Consensus 331 i~l~l~~~~~~~~~~~~f~~~~~Lr~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Lr~L~l~~~~l~~l 410 (1083)
..++++.+....+.+.+|.++++|+.|.+++|.+. ...+..+.. ..+|++|+++++.+..+
T Consensus 36 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------------------~~~~~~~~~-l~~L~~L~Ls~n~l~~~ 96 (606)
T 3t6q_A 36 ECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY------------------WIHEDTFQS-QHRLDTLVLTANPLIFM 96 (606)
T ss_dssp CEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC------------------EECTTTTTT-CTTCCEEECTTCCCSEE
T ss_pred CEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCC------------------EECHHHCCC-CCCCCEEECCCCCCCCC
T ss_conf 58981587347179667256766528978898355------------------248511368-43367644889856545
Q ss_pred -CCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCCCCCCCCEEEECCCCCCCCC
Q ss_conf -9999-999952998678865455688753358520158778688166885774-3699888899939980597686535
Q 001407 411 -PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNLHFVCPVTINFSYCVNLIEF 487 (1083)
Q Consensus 411 -p~~~-~~~~L~~L~L~~~~i~~lw~~~~~~~p~~i~~l~~L~~L~L~~~~~l~-~lp~~~~~~~L~~L~l~~c~~l~~~ 487 (1083)
|..| .+.+|++|++++|.+..+ .+..++.+++|++|++++|.... ..|....+++|+.++++++......
T Consensus 97 ~~~~~~~l~~L~~L~L~~n~i~~l-------~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 169 (606)
T 3t6q_A 97 AETALSGPKALKHLFFIQTGISSI-------DFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169 (606)
T ss_dssp CTTTTSSCTTCCEEECTTSCCSCG-------GGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEEC
T ss_pred CHHHHCCCCCCCEEECCCCCCCCC-------CCCHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
T ss_conf 865523442153765212676657-------8101223782238988798341147654568765687776568445549
Q ss_pred CC---CCCCCC--EEECCCCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCC--EEECCCCCCC---CCCCH
Q ss_conf 87---768822--89737845643491112999876998628989643421114888885--8860687576---66716
Q 001407 488 PQ---ISGKVT--RLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRLKRISTSFCKLRSLV--TLILLGCLNL---EHFPE 557 (1083)
Q Consensus 488 p~---~~~~l~--~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~--~L~L~~c~~l---~~~p~ 557 (1083)
+. ...+++ .|+++.+.+..+++.......|+.|++++|..+. ..+..+.++. .+.+..+... ...+.
T Consensus 170 ~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLL---VIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHH---HHHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred HHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHCCCCCCCCCCCHHHH---HHHHHCCCCCHHHEECHHHCCCCCCCCCHH
T ss_conf 65633221564038966798147548667300100135567726677---776513356442200201102641226866
Q ss_pred HHHHCC--CCCEECCCCCCCCCCCCC-CCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCC-CCHHHCCC
Q ss_conf 666112--357313577788778943-68999996995267778766887768983125630145456679-80001146
Q 001407 558 ILEKME--HLKRIYSDRTPITELPSS-FENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQL-PSSVALSN 633 (1083)
Q Consensus 558 ~l~~l~--~L~~L~l~~~~i~~lp~~-i~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~~~~~~l-~~~l~~l~ 633 (1083)
.+..+. +|+.|+++++.+..++.. +..+++|+.|++++|. +..+|..+..+++|+.|++++|.+..+ +..+..++
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 325 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFP 325 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCT
T ss_pred HHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEECCCCC-CCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHHCCC
T ss_conf 7430320750599944576585577774456678889562882-677782141654688897716876867602330157
Q ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CHHCCCCCCCCEEEEECCCCCCC-CHHHHCCCCCCEE
Q ss_conf 7659986889999876711136999964999048977767---51024998985999207888656-4322089987786
Q 001407 634 MLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGNNFESL-PAIIKQMSQLRFI 709 (1083)
Q Consensus 634 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~n~l~~l-p~~l~~l~~L~~L 709 (1083)
+|+.|++++|......+...+..+++|+.|++++|.+... +..+..+++|+.|++++|.+..+ |..+..+++|+.|
T Consensus 326 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 405 (606)
T 3t6q_A 326 SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELL 405 (606)
T ss_dssp TCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEE
T ss_pred CCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEE
T ss_conf 68988898997444346245506675898878899666456752210567888989898996775788873477457768
Q ss_pred ECCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCC---CCCCCCEEEECCCCCCCC-CC-----CCCCCCCEEECCC
Q ss_conf 156764677789----8898854996307878875789---999976796329889766-79-----9898864896247
Q 001407 710 HLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRS-LP-----ELPLCLQYLNLED 776 (1083)
Q Consensus 710 ~L~~c~~l~~l~----~l~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~~l~~-~~-----~~~~~L~~L~L~~ 776 (1083)
++++|......+ ...++|+.|++.+|......+. ..++|+.|++++|...+. ++ ..+++|+.|++++
T Consensus 406 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~ 485 (606)
T 3t6q_A 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485 (606)
T ss_dssp ECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTT
T ss_pred ECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCC
T ss_conf 78888677756521241765588898989855776877873788788898989988854345431240488766887999
Q ss_pred CCCCCCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCC-CCC--CCCCCEEEECCCCC
Q ss_conf 8897767975---54454231335567686503331243201457866313899886672-110--12344356327333
Q 001407 777 CNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAP-ESL--KSAAICFEFTNCLK 850 (1083)
Q Consensus 777 c~~l~~lp~~---~~sL~~L~i~~c~~L~~lp~~l~~L~~L~~l~l~~l~~~~p~l~~~~-~~~--~~~l~~l~~~~C~~ 850 (1083)
|...+..|.. +++|+.|++.+|......|..+..++.| .++++ ++ .+..++ ..+ ...++.+.+.+++-
T Consensus 486 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~----~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 559 (606)
T 3t6q_A 486 CDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLA----SN-HISIILPSLLPILSQQRTINLRQNPL 559 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECC----SS-CCCCCCGGGHHHHHTSSEEECTTCCE
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCC-EEECC----CC-CCCCCCHHHCCCCCCCCEEECCCCCC
T ss_conf 96670686463265678889898980686896684756651-89876----89-41426876625677878896779986
Q ss_pred C
Q ss_conf 3
Q 001407 851 L 851 (1083)
Q Consensus 851 l 851 (1083)
.
T Consensus 560 ~ 560 (606)
T 3t6q_A 560 D 560 (606)
T ss_dssp E
T ss_pred C
T ss_conf 1
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=1.00 E-value=1 Score=294.66 Aligned_cols=482 Identities=18% Similarity=0.132 Sum_probs=306.8
Q ss_pred EEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCEEECCCCCCCCCCCCCEEECCCCCCCCC-
Q ss_conf 8205765344339232239999735865168532123588874000024422555998888998982797489999989-
Q 001407 332 FLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPSMSTEEQLSYSKVQLPNGLDYLPKKLRYLHWDTYPLRTL- 410 (1083)
Q Consensus 332 ~l~l~~~~~~~~~~~~f~~~~~Lr~L~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Lr~L~l~~~~l~~l- 410 (1083)
.++++.+....+.+.+|.++++||.|.+++|.+. .++...+...++|++|+++++.++.+
T Consensus 36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-------------------~i~~~~~~~l~~L~~L~Ls~n~l~~~~ 96 (606)
T 3vq2_A 36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-------------------TIEDKAWHGLHHLSNLILTGNPIQSFS 96 (606)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-------------------EECTTTTTTCTTCCEEECTTCCCCCCC
T ss_pred EEECCCCCCCEECHHHCCCCCCCCEEECCCCCCC-------------------CCCHHHHHCHHHCCEEECCCCCCCCCC
T ss_conf 8878889757737545557766748868877366-------------------439777306010688678798563048
Q ss_pred CCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCC-CCCCCC-CCCCCCEEEECCCCCCCCC
Q ss_conf 9999-999952998678865455688753358520158778688166885774-369988-8899939980597686535
Q 001407 411 PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLR-SFPSNL-HFVCPVTINFSYCVNLIEF 487 (1083)
Q Consensus 411 p~~~-~~~~L~~L~L~~~~i~~lw~~~~~~~p~~i~~l~~L~~L~L~~~~~l~-~lp~~~-~~~~L~~L~l~~c~~l~~~ 487 (1083)
|..| .+.+|++|++++|.+..+ .+..++++++|++|++++|.... .+|..+ .+++|+.|+++++......
T Consensus 97 p~~~~~l~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~ 169 (606)
T 3vq2_A 97 PGSFSGLTSLENLVAVETKLASL-------ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT 169 (606)
T ss_dssp TTSSTTCTTCCEEECTTSCCCCS-------SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred HHHCCCCCCCCEEECCCCCCCCC-------CCCCCCCCCCCCEEECCCCCCCCEECHHHHHHCCCCCEEECCCCCCEECC
T ss_conf 52207865378887037755544-------51134898877989687885232530686732677778876688531057
Q ss_pred CCCCCC-------CCEEECCCCCCCCCCCCCCCCCCCCEEEEECCCCC-CCCCCCCCCCCCCCEEECCCCC-----CCCC
Q ss_conf 877688-------22897378456434911129998769986289896-4342111488888588606875-----7666
Q 001407 488 PQISGK-------VTRLYLGQSAIEEVPSSIECLTDLEVLDLRGCKRL-KRISTSFCKLRSLVTLILLGCL-----NLEH 554 (1083)
Q Consensus 488 p~~~~~-------l~~L~L~~~~l~~lp~si~~l~~L~~L~L~~c~~l-~~lp~~l~~l~~L~~L~L~~c~-----~l~~ 554 (1083)
+...+. +..|+++.+.+..++.......+|+.|++++|... ...|..++++++|+.+.+.... .+..
T Consensus 170 ~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~ 249 (606)
T 3vq2_A 170 VNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEI 249 (606)
T ss_dssp TTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSC
T ss_pred HHHHHHHHCCCCCCCEEECCCCCCCEECCCCCCCCEEEEEECCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 33412120342002430046897532571105676043352467856166778886026656523141111036774102
Q ss_pred C-CHHHHHCC--CCCEECC-CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHH
Q ss_conf 7-16666112--3573135-777887789436899999699526777876688776898312563014545667980001
Q 001407 555 F-PEILEKME--HLKRIYS-DRTPITELPSSFENLPGLEVLFVEDCSKLDNLPDNIGSLEYLYYILAAASAISQLPSSVA 630 (1083)
Q Consensus 555 ~-p~~l~~l~--~L~~L~l-~~~~i~~lp~~i~~l~~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l~~~~~~~l~~~l~ 630 (1083)
+ +..+..+. .++.+.+ ..+.+......+..+++|+.|+++++.. ..+| .+..+++|+.|.+.+|.+..+|. +
T Consensus 250 ~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~l~-~l~~~~~L~~L~l~~n~l~~lp~-~- 325 (606)
T 3vq2_A 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI-KYLE-DVPKHFKWQSLSIIRCQLKQFPT-L- 325 (606)
T ss_dssp CCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC-CCCC-CCCTTCCCSEEEEESCCCSSCCC-C-
T ss_pred CCHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCCCCEEEECCCCC-HHHH-HCCCCCCCCEEECCCCCCCCCCC-C-
T ss_conf 681776666543474501236655554322235488789877147660-4435-43340117789764666765466-7-
Q ss_pred CCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCC---CHHCCCCCCCCEEEEECCCCCCCCHHHHCCCCCC
Q ss_conf 1467659986889999876711136999964999048977767---5102499898599920788865643220899877
Q 001407 631 LSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVREI---PQEIAYLSSLEILYLSGNNFESLPAIIKQMSQLR 707 (1083)
Q Consensus 631 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~l---p~~l~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~ 707 (1083)
.+++|+.|++++|...... .+..+++|+.|++++|.+... |..+..+++|+.|++++|.+..+|..+..+++|+
T Consensus 326 ~l~~L~~L~l~~n~~~~~~---~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~ 402 (606)
T 3vq2_A 326 DLPFLKSLTLTMNKGSISF---KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQ 402 (606)
T ss_dssp CCSSCCEEEEESCSSCEEC---CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCC
T ss_pred CCCCCCEEECCCCCCCCCH---HHCCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCHHHCCCCCCCC
T ss_conf 8875564454478685310---0024898887977587368775201221467755486788995300055406888889
Q ss_pred EEECCCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCC---CCCCCCEEEECCCCCCCC-CCC---CCCCCCEEECCC
Q ss_conf 86156764677789----8898854996307878875789---999976796329889766-799---898864896247
Q 001407 708 FIHLEDFNMLQSLP----ELPLCLKYLHLIDCKMLQSLPV---LPFCLESLDLTGCNMLRS-LPE---LPLCLQYLNLED 776 (1083)
Q Consensus 708 ~L~L~~c~~l~~l~----~l~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~~l~~-~~~---~~~~L~~L~L~~ 776 (1083)
.|++++|......+ ...++|+.|++.+|......+. ..++|+.|++++|...+. +|. .+++|+.|++++
T Consensus 403 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSK 482 (606)
T ss_dssp EEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred EEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCC
T ss_conf 65898870587537645646213788989689787433555347787898989898379854677604578899898988
Q ss_pred CCCCCCCCCC---CCCCCEEECCCCCCCCCCHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCC---CCCCCCEEEECCCCC
Q ss_conf 8897767975---5445423133556768650333124320145786631389988667211---012344356327333
Q 001407 777 CNMLRSLPEL---PLCLQLLTVRNCNRLQSLPEILLCLQELDASVLEKLSKHSPDLQWAPES---LKSAAICFEFTNCLK 850 (1083)
Q Consensus 777 c~~l~~lp~~---~~sL~~L~i~~c~~L~~lp~~l~~L~~L~~l~l~~l~~~~p~l~~~~~~---~~~~l~~l~~~~C~~ 850 (1083)
|...+..|.. +++|+.|++.+|......|..+..+++|+.++++ ++ .+..+|.. ++.+|+.+.+.+++-
T Consensus 483 n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~----~N-~l~~~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 483 CQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS----FN-RIETSKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECT----TS-CCCCEESCGGGSCTTCCEEECCSCCC
T ss_pred CCCCCCCHHHHCCCCCCCEEECCCCCCCCCCHHHCCCCCCCCEEECC----CC-CCCCCCHHHHHHCCCCCEEECCCCCC
T ss_conf 85776486561546468989898995787487770688768988898----98-37666876752102174887628986
Q ss_pred C
Q ss_conf 3
Q 001407 851 L 851 (1083)
Q Consensus 851 l 851 (1083)
.
T Consensus 558 ~ 558 (606)
T 3vq2_A 558 A 558 (606)
T ss_dssp C
T ss_pred C
T ss_conf 6
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=1.00 E-value=1 Score=292.09 Aligned_cols=382 Identities=15% Similarity=0.155 Sum_probs=260.6
Q ss_pred EEEEECCCCCCCCCCHHHHCCCCCCCEEEE-ECCCCCCCCCCCCCCH------HHCCC-----------------CC---
Q ss_conf 688205765344339232239999735865-1685321235888740------00024-----------------42---
Q 001407 330 GIFLDLSKIKGINLDPRAFTNMSNLRLFKF-YVPKFYEIEKLPSMST------EEQLS-----------------YS--- 382 (1083)
Q Consensus 330 ~i~l~l~~~~~~~~~~~~f~~~~~Lr~L~i-~~~~~~~~~~~~~~~~------~~~~~-----------------~~--- 382 (1083)
...++++.+.....-+.+|.++++||.|.+ ++|.+.+...+..... ..... ..
T Consensus 325 V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 325 VTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEECCCCCCCCCCCHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 98998724789994855774155562843012563356664222344544115678887776666542037511156787
Q ss_pred ---EEECCC---CCCCCCCCCCEEECCC--CCCCCCCCCC-CCCCCEEEECCCCCCCCC-----CCCC-----CCCCCCC
Q ss_conf ---255599---8888998982797489--9999899999-999952998678865455-----6887-----5335852
Q 001407 383 ---KVQLPN---GLDYLPKKLRYLHWDT--YPLRTLPSNF-KPKNLVELNLRCSKVEQP-----WEGE-----KACVPSS 443 (1083)
Q Consensus 383 ---~~~l~~---~~~~~~~~Lr~L~l~~--~~l~~lp~~~-~~~~L~~L~L~~~~i~~l-----w~~~-----~~~~p~~ 443 (1083)
....+. ........++.+.+.. +.+..+|..+ ++.+|++|+|++|.+... |... ...+|..
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHHHHCCCCCCCCCCCCCCHHHCEECCCCCCCCCHHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 87765073324322235442312040566676152118875699987897968867887465322332222224458744
Q ss_pred CC--CCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEEECCCCCCC--CCCCC----------CCCCCEEECCCCCCCCCC
Q ss_conf 01--58778688166885774369988-88999399805976865--35877----------688228973784564349
Q 001407 444 IQ--NFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLI--EFPQI----------SGKVTRLYLGQSAIEEVP 508 (1083)
Q Consensus 444 i~--~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~l~~c~~l~--~~p~~----------~~~l~~L~L~~~~l~~lp 508 (1083)
++ ++++|++|++++|.....+|..+ .+++|+.|+++++..+. .+|.. ..+|+.|+++++.+..+|
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred HHHCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCCCCEEEEECCCCCCCC
T ss_conf 40255999778987189887527387737999899989689876566461778752330155688319982289477618
Q ss_pred C--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC-CCEECCCCCCCCCCCCCCCCC
Q ss_conf 1--1129998769986289896434211148888858860687576667166661123-573135777887789436899
Q 001407 509 S--SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH-LKRIYSDRTPITELPSSFENL 585 (1083)
Q Consensus 509 ~--si~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~-L~~L~l~~~~i~~lp~~i~~l 585 (1083)
. +++.+++|+.|++++|.. ..+| .++.+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+..+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l-~~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~ 641 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKV-RHLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAK 641 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCC-CBCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTT
T ss_pred CHHHHHCCCCCCEEECCCCCC-CCCH-HHCCCCCCEEEECCCCCCC-CCHHHHHHCCCCCCEEECCCCCCCCCCHHHHCC
T ss_conf 723551589889898979982-5621-2247985007987187125-035877525114989998499787476445225
Q ss_pred CC--CCEEECCCCCCCCCCCC---CCC--CCCHHHHHHCCCCCCCCCCCHHH-CCCCCCEEECCCCCCCCCCCCCCCCCC
Q ss_conf 99--96995267778766887---768--98312563014545667980001-146765998688999987671113699
Q 001407 586 PG--LEVLFVEDCSKLDNLPD---NIG--SLEYLYYILAAASAISQLPSSVA-LSNMLRSLDSSHCKGLESFPRTFLLGL 657 (1083)
Q Consensus 586 ~~--L~~L~l~~c~~~~~lp~---~l~--~l~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~ 657 (1083)
.. |+.|++++|...+.+|. .++ .+++|+.|++++|.+..+|..+. .+++|+.|++++|... .++...+...
T Consensus 642 ~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~ 720 (876)
T 4ecn_A 642 SVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPK 720 (876)
T ss_dssp CSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCT
T ss_pred CCCCCCEEECCCCCCCCCCCCCHHHHCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHHHHCCC
T ss_conf 567778897708847886432000000135797688983199688659788713898899989899688-5496784555
Q ss_pred -------CCCCEEEECCCCCCCCCHHCC--CCCCCCEEEEECCCCCCCCHHHHCCCCCCEEECCCCC
Q ss_conf -------996499904897776751024--9989859992078886564322089987786156764
Q 001407 658 -------SAMGLLHISDYAVREIPQEIA--YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 715 (1083)
Q Consensus 658 -------~~L~~L~l~~~~~~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 715 (1083)
++|+.|++++|.+..+|..+. .+++|+.|++++|.+..+|..+..+++|+.|++++|+
T Consensus 721 ~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~ 787 (876)
T 4ecn_A 721 DGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQR 787 (876)
T ss_dssp TSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCB
T ss_pred CCCCCCCCCCCEEECCCCCCCCCHHHHHHCCCCCCCEEEECCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 3343214871589888997866527762442798698990899787610566159998899887997
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=1.00 E-value=1 Score=291.75 Aligned_cols=385 Identities=16% Similarity=0.183 Sum_probs=280.6
Q ss_pred CCEEEEEEECCCCCCCCCCHHHHCCCCCCCEEEEECCCCCCCCCCCC-------CCHH--HC--CCCCEE----ECCCCC
Q ss_conf 72766882057653443392322399997358651685321235888-------7400--00--244225----559988
Q 001407 326 DAIEGIFLDLSKIKGINLDPRAFTNMSNLRLFKFYVPKFYEIEKLPS-------MSTE--EQ--LSYSKV----QLPNGL 390 (1083)
Q Consensus 326 ~~v~~i~l~l~~~~~~~~~~~~f~~~~~Lr~L~i~~~~~~~~~~~~~-------~~~~--~~--~~~~~~----~l~~~~ 390 (1083)
.+|.+ ++++.......-+.+|.++++||.|.+++|.+........ +... .. ...... ..+..+
T Consensus 81 ~~V~~--L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~ 158 (636)
T 4eco_A 81 GRVTG--LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158 (636)
T ss_dssp CCEEE--EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred CCEEE--EEECCCCCCCCCCHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
T ss_conf 97889--9842766577288578568451189876885123774334532356733888888876577755411706667
Q ss_pred C------------------CCCCCCCEEECC--CCCCCCCCCCC-CCCCCEEEECCCCCCCCC-----CCCCC-----CC
Q ss_conf 8------------------899898279748--99999899999-999952998678865455-----68875-----33
Q 001407 391 D------------------YLPKKLRYLHWD--TYPLRTLPSNF-KPKNLVELNLRCSKVEQP-----WEGEK-----AC 439 (1083)
Q Consensus 391 ~------------------~~~~~Lr~L~l~--~~~l~~lp~~~-~~~~L~~L~L~~~~i~~l-----w~~~~-----~~ 439 (1083)
. .....++.+.+. .+.+..+|..+ ++.+|++|+|++|.+... |.... ..
T Consensus 159 ~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp CHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCHHCCC
T ss_conf 78877776427554654101334421300101367775078777256478789886882366423221222221001024
Q ss_pred CCCCCC--CCCCCCEEECCCCCCCCCCCCCC-CCCCCCEEEECCCCCCC--CCCCCC---------CCCCEEECCCCCCC
Q ss_conf 585201--58778688166885774369988-88999399805976865--358776---------88228973784564
Q 001407 440 VPSSIQ--NFKYLSALSFKGCQSLRSFPSNL-HFVCPVTINFSYCVNLI--EFPQIS---------GKVTRLYLGQSAIE 505 (1083)
Q Consensus 440 ~p~~i~--~l~~L~~L~L~~~~~l~~lp~~~-~~~~L~~L~l~~c~~l~--~~p~~~---------~~l~~L~L~~~~l~ 505 (1083)
+|..++ ++++|++|++++|...+.+|..+ .+++|+.|+++++..+. .+|... .++++|+++++.+.
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CCHHHHHCCCCCCCEEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCHHHHHHHHCCCCCCCCCEEECCCCCCC
T ss_conf 86322004468788898048857762838883499978897847988766533578875430465788888989799377
Q ss_pred CCCC--CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHCCC-CCEECCCCCCCCCCCCCC
Q ss_conf 3491--1129998769986289896434211148888858860687576667166661123-573135777887789436
Q 001407 506 EVPS--SIECLTDLEVLDLRGCKRLKRISTSFCKLRSLVTLILLGCLNLEHFPEILEKMEH-LKRIYSDRTPITELPSSF 582 (1083)
Q Consensus 506 ~lp~--si~~l~~L~~L~L~~c~~l~~lp~~l~~l~~L~~L~L~~c~~l~~~p~~l~~l~~-L~~L~l~~~~i~~lp~~i 582 (1083)
.+|. .++.+++|+.|++++|...+.+| .++.+++|++|++++|... .+|..+..+++ |++|+++++.+..+|..+
T Consensus 319 ~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~ 396 (636)
T 4eco_A 319 TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIF 396 (636)
T ss_dssp SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCC
T ss_pred CCCCHHHHCCCCCCCEEECCCCCCCCCHH-HHCCCCCCCEEECCCCCCC-CCCHHHHHHCCCCCEEECCCCCCCCCCHHH
T ss_conf 66765554257888989690880705166-6478898898989899403-033756510236868985298275446655
Q ss_pred CCCC--CCCEEECCCCCCCCCCCCCCC-------CCCHHHHHHCCCCCCCCCCCHHH-CCCCCCEEECCCCCCCCCCCCC
Q ss_conf 8999--996995267778766887768-------98312563014545667980001-1467659986889999876711
Q 001407 583 ENLP--GLEVLFVEDCSKLDNLPDNIG-------SLEYLYYILAAASAISQLPSSVA-LSNMLRSLDSSHCKGLESFPRT 652 (1083)
Q Consensus 583 ~~l~--~L~~L~l~~c~~~~~lp~~l~-------~l~~L~~L~l~~~~~~~l~~~l~-~l~~L~~L~l~~~~~~~~~~~~ 652 (1083)
..+. +|+.|++++|...+..|..++ .+++|+.|++++|.+..+|..+. .+++|+.|++++|... .++..
T Consensus 397 ~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 475 (636)
T 4eco_A 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKN 475 (636)
T ss_dssp CTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSS
T ss_pred HHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCC-CCCHH
T ss_conf 33345766889774885788652442002201125898888977279668678788715898898989799788-73978
Q ss_pred CCCCCC-------CCCEEEECCCCCCCCCHHCC--CCCCCCEEEEECCCCCCCCHHHHCCCCCCEEECCCCC
Q ss_conf 136999-------96499904897776751024--9989859992078886564322089987786156764
Q 001407 653 FLLGLS-------AMGLLHISDYAVREIPQEIA--YLSSLEILYLSGNNFESLPAIIKQMSQLRFIHLEDFN 715 (1083)
Q Consensus 653 ~~~~~~-------~L~~L~l~~~~~~~lp~~l~--~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~c~ 715 (1083)
.+.... .|+.|++++|.+..+|..+. .+++|+.|++++|.+..+|..+..+++|+.|++++|.
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~ 547 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQR 547 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCB
T ss_pred HHCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCEEECCCCC
T ss_conf 840440012214773389896993881685453445887698989899887768235308887878898886
No 9
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=287.31 Aligned_cols=276 Identities=18% Similarity=0.179 Sum_probs=195.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHH--HHCCCCCE-EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCC----CCCC---
Q ss_conf 9859999985999928999999999--83026722-799731344333468878999999974201343----5579---
Q 001407 5 DTVQIVGIWGMGGIGKTTLAKAIFD--QFSHEFEG-SCFVSDVRGNSETAGGLEHLQKQMLSTTLSEKL----EVAG--- 74 (1083)
Q Consensus 5 ~~~~vi~I~G~gGiGKTtLA~~~~~--~~~~~F~~-~~~~~~~~~~s~~~~~l~~l~~~~l~~l~~~~~----~~~~--- 74 (1083)
+++++|+|+||||+||||||+++|+ +++.+|+. ++|+. ++.. .....+...+...+..... ....
T Consensus 148 d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs-Vs~~----~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ 222 (1221)
T 1vt4_I 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNC----NSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222 (1221)
T ss_dssp CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE-CCCS----SSHHHHHHHHHHHHHHHCSSSTTTSCCCSS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEE-ECCC----CCHHHHHHHHHHHHHHCCCCCCCCCCCCCC
T ss_conf 89718999769996679999999971498874899389998-2899----999999999999986227210220013467
Q ss_pred -----CCCHHHHHHHH---CCCEEEEEEECCCCHHHHHHHHHCCCCCCCCCEEEEEECCHHHHHHHCCCCCCEEEEC---
Q ss_conf -----99617899974---0741699980899928899996022778999699999164357763036632189806---
Q 001407 75 -----PNIPHFTKERV---RRMKLLIVLDDVNEVGQLKRLIGELDQFGQGSRIVVTTRDKRVLEKFRGEEKKIYRVN--- 143 (1083)
Q Consensus 75 -----~~~~~~~~~~l---~~kk~LlVLDdv~~~~~~~~l~~~~~~~~~gs~IiiTTR~~~~~~~~~~~~~~~~~l~--- 143 (1083)
..+...+++.+ .++|+||||||||+.++|+.+. +||+||||||++.++..+. ....|+++
T Consensus 223 ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f~-------pGSRILVTTRd~~Va~~l~--g~~vy~LeL~d 293 (1221)
T 1vt4_I 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-------LSCKILLTTRFKQVTDFLS--AATTTHISLDH 293 (1221)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHHH-------SSCCEEEECSCSHHHHHHH--HHSSCEEEECS
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHC-------CCEEEEEECCCHHHHHHCC--CCEEEEECCCC
T ss_conf 99999999999999998504788799871868189998647-------9829999443737998668--97089946865
Q ss_pred ---CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHCCC--CHHHHHHHHHHHHHHCCCCHHH
Q ss_conf ---99987799999785308999991158999999975189920578886430688--8878999999874203754034
Q 001407 144 ---GLEFEEAFEHFCNFAFKENHCPEDLNWHSRSVVSYTKGNPLVLEVLGSSLCLK--RKSHWGKVLHDLNRICESEIHD 218 (1083)
Q Consensus 144 ---~L~~~ea~~lf~~~a~~~~~~~~~~~~l~~~i~~~~~glPlal~~l~~~L~~~--~~~~w~~~l~~l~~~~~~~~~~ 218 (1083)
+|+++||++||+++. +.. ..++..++ |+|+|||++++|+.|+++ +.++|+.. . ..+
T Consensus 294 ~dL~LS~eEA~eLF~~~~-g~~-----~eeL~~eI---CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~---~~~ 354 (1221)
T 1vt4_I 294 HSMTLTPDEVKSLLLKYL-DCR-----PQDLPREV---LTTNPRRLSIIAESIRDGLATWDNWKHV-------N---CDK 354 (1221)
T ss_dssp SSSCCCHHHHHHHHHHHH-CCC-----TTTHHHHH---CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------S---CHH
T ss_pred CCCCCCHHHHHHHHHHHC-CCC-----HHHHHHHH---HCCCHHHHHHHHHHHHCCCCCHHHHHCC-------C---HHH
T ss_conf 568969999999999974-998-----89999999---6989999999999984889979998669-------8---618
Q ss_pred HHHHHHHCCCCCCCCC-CCEEEEEEECCCCCCHHH--HHHHHHH----HHHHHHHHHHHCCCEEEE--CCEEEEEHHHHH
Q ss_conf 7857641103889002-251779951248987569--9999834----257666887504536983--997982088999
Q 001407 219 IYDILKISFNKLTPRV-KSIFLDIACFFEGEDKDF--VASILDD----SESDVLDILIDKSLVSIS--GNFLNMHDILQE 289 (1083)
Q Consensus 219 i~~~l~~sy~~L~~~~-k~~fl~~a~f~~~~~~~~--~~~~l~~----~~~~~l~~L~~~sLi~~~--~~~~~mH~li~~ 289 (1083)
+..+++.||+.|++++ |.||++||+||+++.++. +...+.. .++.+++.|+++||++.. ..+|+|||++++
T Consensus 355 I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE 434 (1221)
T 1vt4_I 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434 (1221)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHCCEEEECCCCEEEEHHHHHH
T ss_conf 99999999984889999999999717799998779999987667788999999999996198898689998986099999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99999731043698963458895679999
Q 001407 290 MGRQIVRQESEKEPGKRSRLWDPKEISRV 318 (1083)
Q Consensus 290 ~~~~i~~~e~~~~~~~~~rl~~~~~i~~~ 318 (1083)
++.. ....+..+.|+.+.-+++.+
T Consensus 435 Lr~~-----~~e~~alHrRLvd~Y~~~~v 458 (1221)
T 1vt4_I 435 LKVK-----LENEYALHRSIVDHYNIPKT 458 (1221)
T ss_dssp HHHH-----HSCCTTHHHHHHHHHHHHHH
T ss_pred HHCC-----CCCHHHHHHHHHHHHHHHCC
T ss_conf 8568-----98599999999999985485
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=286.45 Aligned_cols=413 Identities=16% Similarity=0.106 Sum_probs=243.9
Q ss_pred CCCCEEECCCCCCCCC-CCCC-CCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCC-CCCC
Q ss_conf 8982797489999989-9999-99995299867886545568875335852015877868816688577436998-8889
Q 001407 395 KKLRYLHWDTYPLRTL-PSNF-KPKNLVELNLRCSKVEQPWEGEKACVPSSIQNFKYLSALSFKGCQSLRSFPSN-LHFV 471 (1083)
Q Consensus 395 ~~Lr~L~l~~~~l~~l-p~~~-~~~~L~~L~L~~~~i~~lw~~~~~~~p~~i~~l~~L~~L~L~~~~~l~~lp~~-~~~~ 471 (1083)
++|++|+++++.+..+ |..| .+.+|++|++++|.+... .|..++.+++|++|++++|......|.. ..++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~ 129 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-------AETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129 (606)
T ss_dssp TTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-------CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCT
T ss_pred CCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCC-------CHHHHCCCCCCCEEECCCCCCCCCCCCHHCCCC
T ss_conf 6652897889835524851136843367644889856545-------865523442153765212676657810122378
Q ss_pred CCCEEEECCCCCCC-CCCCC--CCCCCEEECCCCCCCCCC-CCCCCCCCCC--EEEEECCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 99399805976865-35877--688228973784564349-1112999876--998628989643421114888885886
Q 001407 472 CPVTINFSYCVNLI-EFPQI--SGKVTRLYLGQSAIEEVP-SSIECLTDLE--VLDLRGCKRLKRISTSFCKLRSLVTLI 545 (1083)
Q Consensus 472 ~L~~L~l~~c~~l~-~~p~~--~~~l~~L~L~~~~l~~lp-~si~~l~~L~--~L~L~~c~~l~~lp~~l~~l~~L~~L~ 545 (1083)
+|+.|+++++.... ..|.. ..+++.|+++++.+..++ ..++.+++|+ .|++++|......|. .....+|+.|+
T Consensus 130 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~-~~~~~~L~~L~ 208 (606)
T 3t6q_A 130 TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG-AFDSAVFQSLN 208 (606)
T ss_dssp TCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT-TTTTCEEEEEE
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCCCCHH-HHHHCCCCCCC
T ss_conf 22389887983411476545687656877765684455496563322156403896679814754866-73001001355
Q ss_pred CCCCCCCCCCCHHHHHCCCCCEECCCCCCCC-----CCC-CCCCCCC--CCCEEECCCCCCCCCCCCCCCCCCHHHHHHC
Q ss_conf 0687576667166661123573135777887-----789-4368999--9969952677787668877689831256301
Q 001407 546 LLGCLNLEHFPEILEKMEHLKRIYSDRTPIT-----ELP-SSFENLP--GLEVLFVEDCSKLDNLPDNIGSLEYLYYILA 617 (1083)
Q Consensus 546 L~~c~~l~~~p~~l~~l~~L~~L~l~~~~i~-----~lp-~~i~~l~--~L~~L~l~~c~~~~~lp~~l~~l~~L~~L~l 617 (1083)
+++|. ..+..+..+.++....+...... .++ ..+..+. +|+.|++++|......+..++.+++|+.|++
T Consensus 209 l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 285 (606)
T 3t6q_A 209 FGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDL 285 (606)
T ss_dssp CTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEEC
T ss_pred CCCCH---HHHHHHHHCCCCCHHHEECHHHCCCCCCCCCHHHHCHHHCCCEEEEEEECCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 67726---677776513356442200201102641226866743032075059994457658557777445667888956
Q ss_pred CCCCCCCCCCHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC-CCCH-HCCCCCCCCEEEEECCCCCC
Q ss_conf 454566798000114676599868899998767111369999649990489777-6751-02499898599920788865
Q 001407 618 AASAISQLPSSVALSNMLRSLDSSHCKGLESFPRTFLLGLSAMGLLHISDYAVR-EIPQ-EIAYLSSLEILYLSGNNFES 695 (1083)
Q Consensus 618 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~lp~-~l~~l~~L~~L~L~~n~l~~ 695 (1083)
+++.+..+|..+..+++|+.|++++|..... +...+..+++|+.|++++|.+. .+|. .+..+++|+.|++++|.+..
T Consensus 286 ~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 364 (606)
T 3t6q_A 286 TATHLSELPSGLVGLSTLKKLVLSANKFENL-CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET 364 (606)
T ss_dssp TTSCCSCCCSSCCSCTTCCEEECTTCCCSBG-GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCCCCCCHHHCCCCCCCEEECCCCCCCCC-CHHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCC
T ss_conf 2882677782141654688897716876867-602330157689888989974443462455066758988788996664
Q ss_pred C---CHHHHCCCCCCEEECCCCCCCCCCCC---CCCCCCEEEECCCCCCCCCC----CCCCCCCEEEECCCCCCCCCCC-
Q ss_conf 6---43220899877861567646777898---89885499630787887578----9999976796329889766799-
Q 001407 696 L---PAIIKQMSQLRFIHLEDFNMLQSLPE---LPLCLKYLHLIDCKMLQSLP----VLPFCLESLDLTGCNMLRSLPE- 764 (1083)
Q Consensus 696 l---p~~l~~l~~L~~L~L~~c~~l~~l~~---l~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~~~~l~~~~~- 764 (1083)
. +..+..+++|+.|++++|......+. ..++|+.|++.+|......+ ...++|+.|++++|......+.
T Consensus 365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 444 (606)
T 3t6q_A 365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444 (606)
T ss_dssp EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred CCCCCHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCHHH
T ss_conf 56752210567888989898996775788873477457768788886777565212417655888989898557768778
Q ss_pred --CCCCCCEEECCCCCCCCC-CC-----CCCCCCCEEECCCCCCCCCCHHHHHCCCCCHHHHH
Q ss_conf --898864896247889776-79-----75544542313355676865033312432014578
Q 001407 765 --LPLCLQYLNLEDCNMLRS-LP-----ELPLCLQLLTVRNCNRLQSLPEILLCLQELDASVL 819 (1083)
Q Consensus 765 --~~~~L~~L~L~~c~~l~~-lp-----~~~~sL~~L~i~~c~~L~~lp~~l~~L~~L~~l~l 819 (1083)
.+++|+.|++++|...+. ++ ..+++|+.|++.+|......|..+..+++|+.+++
T Consensus 445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred HHCCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEEC
T ss_conf 737887888989899888543454312404887668879999667068646326567888989
Done!