Query 001409
Match_columns 1083
No_of_seqs 410 out of 2213
Neff 4.1
Searched_HMMs 46136
Date Fri Mar 29 00:04:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001409.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001409hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0049 Transcription factor, 100.0 1.9E-61 4E-66 548.1 32.7 394 213-628 44-460 (939)
2 KOG0049 Transcription factor, 100.0 6.7E-28 1.5E-32 275.8 16.8 232 292-575 220-458 (939)
3 PLN03212 Transcription repress 99.9 1.5E-24 3.3E-29 230.0 10.6 115 509-631 10-125 (249)
4 KOG0048 Transcription factor, 99.9 3.4E-24 7.3E-29 228.2 9.6 100 531-630 8-108 (238)
5 PLN03091 hypothetical protein; 99.9 1.7E-23 3.6E-28 235.4 10.6 102 530-631 12-114 (459)
6 PLN03212 Transcription repress 99.9 2.1E-22 4.6E-27 213.7 6.2 106 474-581 20-126 (249)
7 PLN03091 hypothetical protein; 99.8 1.5E-21 3.4E-26 219.7 6.3 106 473-580 8-114 (459)
8 KOG0048 Transcription factor, 99.8 7.3E-20 1.6E-24 195.1 8.5 100 477-578 7-107 (238)
9 KOG0051 RNA polymerase I termi 99.8 3.3E-18 7.1E-23 199.5 14.6 239 391-634 263-572 (607)
10 KOG0051 RNA polymerase I termi 99.8 6.5E-18 1.4E-22 197.1 17.0 227 325-579 307-568 (607)
11 KOG0050 mRNA splicing protein 99.7 3.7E-19 7.9E-24 201.8 -0.6 199 530-730 5-216 (617)
12 COG5147 REB1 Myb superfamily p 99.7 8.2E-17 1.8E-21 186.5 8.6 232 393-630 40-397 (512)
13 COG5147 REB1 Myb superfamily p 99.5 4.6E-14 9.9E-19 164.0 6.9 205 424-631 18-337 (512)
14 PF13921 Myb_DNA-bind_6: Myb-l 99.4 1E-12 2.3E-17 111.9 6.2 60 535-595 1-60 (60)
15 PF13921 Myb_DNA-bind_6: Myb-l 99.3 3.2E-12 6.9E-17 108.9 8.0 60 429-490 1-60 (60)
16 PF00249 Myb_DNA-binding: Myb- 99.0 2.2E-10 4.7E-15 94.4 4.1 47 532-578 1-48 (48)
17 KOG0050 mRNA splicing protein 99.0 8E-11 1.7E-15 135.0 2.0 143 477-623 5-158 (617)
18 PF00249 Myb_DNA-binding: Myb- 98.9 9.9E-10 2.1E-14 90.5 5.3 46 584-629 1-48 (48)
19 smart00717 SANT SANT SWI3, AD 98.7 2.5E-08 5.4E-13 79.2 6.5 47 584-630 1-48 (49)
20 smart00717 SANT SANT SWI3, AD 98.6 4.9E-08 1.1E-12 77.5 4.9 48 532-579 1-48 (49)
21 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 1.2E-07 2.6E-12 74.3 6.1 43 586-628 1-44 (45)
22 cd00167 SANT 'SWI3, ADA2, N-Co 98.4 2.3E-07 5.1E-12 72.7 4.5 45 534-578 1-45 (45)
23 KOG0457 Histone acetyltransfer 96.7 0.0017 3.7E-08 75.3 4.7 49 531-579 71-119 (438)
24 TIGR01557 myb_SHAQKYF myb-like 96.5 0.007 1.5E-07 52.9 6.3 48 426-473 3-54 (57)
25 TIGR01557 myb_SHAQKYF myb-like 96.3 0.0062 1.3E-07 53.2 4.7 47 532-578 3-54 (57)
26 KOG0457 Histone acetyltransfer 96.2 0.0053 1.2E-07 71.3 5.1 49 581-629 69-118 (438)
27 COG5259 RSC8 RSC chromatin rem 95.6 0.013 2.8E-07 68.7 4.7 47 583-629 278-324 (531)
28 KOG1279 Chromatin remodeling f 95.3 0.023 4.9E-07 68.1 5.5 47 583-629 252-298 (506)
29 KOG1279 Chromatin remodeling f 94.9 0.024 5.1E-07 67.9 4.4 45 531-576 252-296 (506)
30 COG5259 RSC8 RSC chromatin rem 94.8 0.022 4.9E-07 66.8 3.7 46 531-577 278-323 (531)
31 PF13325 MCRS_N: N-terminal re 94.6 0.16 3.4E-06 54.7 9.0 94 534-629 1-126 (199)
32 PF13837 Myb_DNA-bind_4: Myb/S 94.5 0.057 1.2E-06 49.2 4.8 47 427-473 2-64 (90)
33 PF13837 Myb_DNA-bind_4: Myb/S 94.4 0.028 6.1E-07 51.2 2.5 46 585-630 2-65 (90)
34 TIGR02894 DNA_bind_RsfA transc 93.4 0.049 1.1E-06 56.6 2.4 50 530-580 2-57 (161)
35 TIGR02894 DNA_bind_RsfA transc 91.4 0.19 4.2E-06 52.3 3.8 54 583-637 3-63 (161)
36 PF08914 Myb_DNA-bind_2: Rap1 91.3 0.21 4.6E-06 44.9 3.5 49 533-581 3-60 (65)
37 COG5114 Histone acetyltransfer 91.0 0.15 3.3E-06 57.7 2.7 46 534-579 65-110 (432)
38 COG5114 Histone acetyltransfer 89.5 0.35 7.5E-06 54.9 3.9 48 582-629 61-109 (432)
39 PF08914 Myb_DNA-bind_2: Rap1 89.2 0.15 3.2E-06 45.9 0.7 50 479-528 2-60 (65)
40 PLN03142 Probable chromatin-re 88.6 1.4 3.1E-05 57.4 9.0 141 428-575 826-981 (1033)
41 PLN03142 Probable chromatin-re 88.4 1.7 3.6E-05 56.8 9.5 99 534-632 826-987 (1033)
42 PF13325 MCRS_N: N-terminal re 88.1 0.83 1.8E-05 49.3 5.5 95 481-577 1-125 (199)
43 PF13873 Myb_DNA-bind_5: Myb/S 86.8 0.63 1.4E-05 41.9 3.3 47 532-578 2-69 (78)
44 PF13873 Myb_DNA-bind_5: Myb/S 85.9 1.2 2.6E-05 40.1 4.5 47 584-630 2-70 (78)
45 PRK13923 putative spore coat p 85.9 0.77 1.7E-05 48.5 3.7 51 582-633 3-60 (170)
46 PRK13923 putative spore coat p 84.6 1.1 2.4E-05 47.3 4.2 48 425-474 4-57 (170)
47 COG5118 BDP1 Transcription ini 80.1 3 6.5E-05 48.7 5.7 50 582-631 363-412 (507)
48 PF09111 SLIDE: SLIDE; InterP 75.2 3.6 7.9E-05 41.1 4.1 50 581-630 46-111 (118)
49 COG5118 BDP1 Transcription ini 70.2 4.4 9.6E-05 47.4 3.8 44 532-576 365-408 (507)
50 PF13404 HTH_AsnC-type: AsnC-t 69.8 8 0.00017 32.0 4.3 38 590-628 3-41 (42)
51 PF12776 Myb_DNA-bind_3: Myb/S 69.5 9 0.0002 35.4 5.1 45 586-630 1-63 (96)
52 KOG1194 Predicted DNA-binding 68.8 14 0.0003 44.4 7.5 52 583-634 186-237 (534)
53 KOG4282 Transcription factor G 67.3 5.8 0.00013 45.4 4.1 48 584-631 54-115 (345)
54 KOG4282 Transcription factor G 67.3 9.7 0.00021 43.6 5.8 48 426-473 54-113 (345)
55 PF13404 HTH_AsnC-type: AsnC-t 67.0 14 0.00031 30.6 5.1 38 433-472 4-41 (42)
56 KOG4167 Predicted DNA-binding 64.2 7.4 0.00016 48.8 4.3 44 532-576 619-662 (907)
57 PF09111 SLIDE: SLIDE; InterP 63.8 11 0.00023 37.9 4.7 53 421-473 44-110 (118)
58 KOG2656 DNA methyltransferase 62.9 5.3 0.00012 47.0 2.7 102 500-631 74-183 (445)
59 KOG4167 Predicted DNA-binding 61.9 14 0.00031 46.5 6.0 44 585-628 620-663 (907)
60 PRK11179 DNA-binding transcrip 57.3 17 0.00038 37.0 5.0 42 590-632 9-51 (153)
61 PRK11169 leucine-responsive tr 53.7 17 0.00037 37.5 4.3 43 589-632 13-56 (164)
62 smart00595 MADF subfamily of S 53.4 11 0.00025 34.4 2.7 26 605-631 29-54 (89)
63 PF12776 Myb_DNA-bind_3: Myb/S 48.8 51 0.0011 30.4 6.2 45 428-472 1-61 (96)
64 PF08281 Sigma70_r4_2: Sigma-7 48.2 24 0.00053 29.5 3.7 39 589-628 12-50 (54)
65 PRK11179 DNA-binding transcrip 47.8 33 0.00071 35.0 5.2 46 432-479 9-54 (153)
66 PF11626 Rap1_C: TRF2-interact 43.0 23 0.00051 33.3 3.1 30 475-507 43-80 (87)
67 PRK11169 leucine-responsive tr 42.5 34 0.00075 35.3 4.5 46 431-478 13-58 (164)
68 PRK09413 IS2 repressor TnpA; R 42.3 1.2E+02 0.0027 29.9 8.1 46 425-474 9-54 (121)
69 PF11626 Rap1_C: TRF2-interact 38.5 39 0.00085 31.8 3.8 30 422-454 43-80 (87)
70 KOG1194 Predicted DNA-binding 37.9 32 0.00069 41.5 3.8 46 531-577 186-231 (534)
71 smart00351 PAX Paired Box doma 33.9 2.7E+02 0.0059 27.8 9.1 84 424-509 13-103 (125)
72 KOG4468 Polycomb-group transcr 32.8 44 0.00096 41.6 3.9 50 584-633 88-147 (782)
73 KOG4468 Polycomb-group transcr 32.6 54 0.0012 40.9 4.6 46 532-578 88-143 (782)
74 PF07750 GcrA: GcrA cell cycle 32.2 53 0.0012 34.6 4.0 42 586-628 2-43 (162)
75 KOG2656 DNA methyltransferase 29.8 52 0.0011 39.2 3.7 45 533-578 131-181 (445)
76 PF04931 DNA_pol_phi: DNA poly 25.4 1E+02 0.0022 39.7 5.5 87 9-123 648-747 (784)
77 smart00344 HTH_ASNC helix_turn 25.0 1.3E+02 0.0028 28.4 5.0 41 590-631 3-44 (108)
78 COG4954 Uncharacterized protei 24.9 37 0.0008 33.9 1.2 28 91-127 51-78 (135)
79 KOG2483 Upstream transcription 23.9 1.3E+02 0.0028 33.7 5.3 41 210-250 96-136 (232)
80 PF08112 ATP-synt_E_2: ATP syn 23.2 91 0.002 27.7 3.1 20 218-237 29-48 (56)
81 PF08281 Sigma70_r4_2: Sigma-7 23.0 1.4E+02 0.0031 24.8 4.3 39 432-473 13-51 (54)
82 PF04545 Sigma70_r4: Sigma-70, 22.2 1.1E+02 0.0023 25.4 3.3 40 590-630 7-46 (50)
83 cd00131 PAX Paired Box domain 21.2 6.9E+02 0.015 25.2 9.4 84 424-509 13-103 (128)
84 KOG2009 Transcription initiati 20.5 1.2E+02 0.0026 38.0 4.6 53 580-632 405-457 (584)
85 COG1522 Lrp Transcriptional re 20.2 1.7E+02 0.0038 29.1 5.0 44 432-477 8-51 (154)
86 smart00595 MADF subfamily of S 20.0 1E+02 0.0022 28.2 3.1 23 448-472 29-51 (89)
87 PF11035 SnAPC_2_like: Small n 20.0 2.2E+02 0.0047 33.5 6.1 49 584-632 21-73 (344)
No 1
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=100.00 E-value=1.9e-61 Score=548.09 Aligned_cols=394 Identities=27% Similarity=0.472 Sum_probs=324.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCcCCCCccC
Q 001409 213 VFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVKILKDFQVSCRKVTGRALSQKKDLRVQLISSSCNSRKSKDSEG 292 (1083)
Q Consensus 213 ~~~dAL~~Nr~YQ~vL~~kL~eIE~~L~qNr~~qeevkil~d~q~s~~r~~~~als~~k~prv~li~~~kf~~k~kd~~~ 292 (1083)
+|+.++++|++||+||+++|.++++.|.+|+++|+++ +.++.++. |..+.+++.|. .++ +++||+++
T Consensus 44 t~e~~~~~n~~y~eVi~~~l~~~~~~L~~nl~~q~~l--~~~~~~~~----Ga~v~kGk~p~-~~y--m~pyFkdd---- 110 (939)
T KOG0049|consen 44 TFEGLMNVNETYVEVLDSALLSVQQHLDDNLKRQQQL--KEEYRLYN----GADITKGKVPV-HLY--MPPYFKDD---- 110 (939)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh--chhhhccc----ccccccCcCCc-hhc--cCcccccc----
Confidence 4567999999999999999999999999999999996 45666553 33355566443 333 35566664
Q ss_pred cccccccccCCCCCCHHHHHHHHHhccCCc---cccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccC-------CCCC
Q 001409 293 TNKKLSALNYGPAENSQVANYKMAMSKSPL---SLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFS-------VPEG 362 (1083)
Q Consensus 293 ~~~K~s~~g~gPP~N~da~~~r~~le~~Pl---~l~~kkWSkkE~e~LrkaVkqqlqe~lLk~~~~r~S-------~~E~ 362 (1083)
+.|++||+|+|+++ +++.+.++. +...++||..|+++|+++|++++.+|+++....+.. ..-+
T Consensus 111 ------~~G~~pP~NED~re-kchq~~k~fd~~m~~~~kWt~~eKk~lr~sVk~~lL~h~~qp~~~~~~~~~~~~~~~Ss 183 (939)
T KOG0049|consen 111 ------NNGMYPPMNEDARE-KCHQVLKWFDPMMKEEKKWTPSEKKTLRTSVKNALLAHQVQPWCSRRDIVARDADITSS 183 (939)
T ss_pred ------cCCCCCCCchhHHH-HHhccccccchhhhhcccCChHHHHHHHHHHHHHHHHHHhchhhhhhhhhhhccccccc
Confidence 45899999999954 555555543 456789999999999999999998887764332211 0000
Q ss_pred C-CC--CchhhHHHHhhhcccccChH--HHhhhCCCCCHHHHHhhcCCC-CCHHHHHHHHHhhcCCCCCCCCCCHHHHHH
Q 001409 363 S-AT--DTNSLDSILASIKDLEVTPE--MIRDFLPKVNWDQVASMYVQG-RSGAECEARWLNFEDPLINHNPWTVEEEKS 436 (1083)
Q Consensus 363 ~-~~--d~~~Ld~l~~qIkdleltpE--~irq~l~kiDW~kIA~~~lp~-RSa~ECr~RW~n~ldP~inkgkWTkEEDek 436 (1083)
. .+ .+..+..++..|-.+.-.+| .+...++.|||.+|++..|.+ ||+++|+.+|+|+++|.+|+..|+.||+++
T Consensus 184 ~L~R~~~E~~l~~l~~~ia~~~~~~ee~~l~~~~d~~DW~~ISn~dfEgsrS~~~~~~~W~n~l~P~~nk~~WS~EE~E~ 263 (939)
T KOG0049|consen 184 NLDRRQWEMELEDLMRKIAYVREKSEEEVLTASADYVDWTAISNFDFEGSRSEWAVKSKWYNELNPKWNKEHWSNEEVEK 263 (939)
T ss_pred chhhHHHHHHHHHHHHHHHHhhhcchhhhhhccccccCHHHhccccccccCCHHHHHHHHhhhcCCccchhccChHHHHH
Confidence 0 00 01122333334444333322 223336789999999998877 799999999999999999999999999999
Q ss_pred HHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHHHHHHHHhC---CCChhhhhhhcCCCC
Q 001409 437 LLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYG---ESNWQSVASTLKGRT 513 (1083)
Q Consensus 437 LleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekLleLVek~G---~~nW~kIA~~mpGRT 513 (1083)
|+.++..+++.+|..||..||++|+.|||+.+|++.+. .+....||+|||.+|+.+|+.+. +++|.+|.++|+||+
T Consensus 264 L~AiA~A~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~-~L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~ 342 (939)
T KOG0049|consen 264 LKALAEAPKFVSWPMIALNLGTNRSSYQCMEKFKTEVS-QLSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRT 342 (939)
T ss_pred HHHHHhccccccHHHHHHHhCCCcchHHHHHHHHHHHH-HHHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcc
Confidence 99999999999999999999999999999999998754 46679999999999999999864 679999999999999
Q ss_pred ccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccCCCccCCCCCHHHHH
Q 001409 514 GTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDL 593 (1083)
Q Consensus 514 ~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~LdPsikkgpWT~EEDe 593 (1083)
..|...||.++|+|+ .++|+||.+||.+|+.+|.+||..+|.+|...||||+..|||+||.|+|+.+.+++.||..||+
T Consensus 343 ~~qLI~R~~~~LdPs-ikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~ede 421 (939)
T KOG0049|consen 343 RQQLITRFSHTLDPS-VKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDE 421 (939)
T ss_pred hhhhhhhheeccCcc-ccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchH
Confidence 999999999999999 5889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCC-CHHHHhhhCCCCCH---HHHHHHHHHh
Q 001409 594 RLEAAIKEHGY-CWSKVASALPSRTD---NQCWRRWKAL 628 (1083)
Q Consensus 594 kLLelVke~G~-kWskIAk~LpGRTd---~QCRnRWk~L 628 (1083)
.||.+|..||. +|.+||..||+||. .-||.|+-.+
T Consensus 422 qL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~~~ 460 (939)
T KOG0049|consen 422 QLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLIAA 460 (939)
T ss_pred HHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHHHH
Confidence 99999999998 99999999999999 4555555544
No 2
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.95 E-value=6.7e-28 Score=275.79 Aligned_cols=232 Identities=24% Similarity=0.471 Sum_probs=202.4
Q ss_pred CcccccccccCCCCCCHHHHHHHHHhccCCc-cccCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCchhh
Q 001409 292 GTNKKLSALNYGPAENSQVANYKMAMSKSPL-SLHRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSL 370 (1083)
Q Consensus 292 ~~~~K~s~~g~gPP~N~da~~~r~~le~~Pl-~l~~kkWSkkE~e~LrkaVkqqlqe~lLk~~~~r~S~~E~~~~d~~~L 370 (1083)
+||.++|++.|..-..+... +..+.++.. .+++--||.+|.+.|..- +. +
T Consensus 220 ~DW~~ISn~dfEgsrS~~~~--~~~W~n~l~P~~nk~~WS~EE~E~L~Ai------------A~------------A--- 270 (939)
T KOG0049|consen 220 VDWTAISNFDFEGSRSEWAV--KSKWYNELNPKWNKEHWSNEEVEKLKAL------------AE------------A--- 270 (939)
T ss_pred cCHHHhccccccccCCHHHH--HHHHhhhcCCccchhccChHHHHHHHHH------------Hh------------c---
Confidence 79999999999887777643 455555533 578899999999988641 00 0
Q ss_pred HHHHhhhcccccChHHHhhhCCCCCHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHh---CCC
Q 001409 371 DSILASIKDLEVTPEMIRDFLPKVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEK---GIT 447 (1083)
Q Consensus 371 d~l~~qIkdleltpE~irq~l~kiDW~kIA~~~lp~RSa~ECr~RW~n~ldP~inkgkWTkEEDekLleLVek~---G~~ 447 (1083)
..-+.|..||..+..+||.++|..+++.++.- +....||.|||.+|.+||+.. .+.
T Consensus 271 --------------------~~~~~W~~IA~~Lgt~RS~yQC~~kF~t~~~~-L~ekeWsEEed~kL~alV~~~~~nShI 329 (939)
T KOG0049|consen 271 --------------------PKFVSWPMIALNLGTNRSSYQCMEKFKTEVSQ-LSEKEWSEEEDTKLIALVKITSINSHI 329 (939)
T ss_pred --------------------cccccHHHHHHHhCCCcchHHHHHHHHHHHHH-HHhhhcchhhhHHHHHHHHHhhccCcc
Confidence 11347999999988899999999999998765 455789999999999999986 456
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCccccccccccCCCC
Q 001409 448 DWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHP 527 (1083)
Q Consensus 448 dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekLleLVek~G~~nW~kIA~~mpGRT~~QCr~RW~~~Lnp 527 (1083)
+|.+|...| ++|+..|...||...|+|++++|.||.+||.+|+.+|.+||..+|-+|-+.||||+..|||.||.++|+.
T Consensus 330 ~w~kVV~Ym-pgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~ 408 (939)
T KOG0049|consen 330 QWDKVVQYM-PGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNR 408 (939)
T ss_pred chHHHHHhc-CCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHH
Confidence 899999999 6899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChH---HHHHHHH
Q 001409 528 SRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQV---QCRERWV 575 (1083)
Q Consensus 528 ~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~k---QCReRW~ 575 (1083)
. .++|.||-.||+.|+.+|..||.++|.+||.++|+||.+ .||.|+.
T Consensus 409 s-~K~~rW~l~edeqL~~~V~~YG~g~WakcA~~Lp~~t~~q~~rrR~R~~ 458 (939)
T KOG0049|consen 409 S-AKVERWTLVEDEQLLYAVKVYGKGNWAKCAMLLPKKTSRQLRRRRLRLI 458 (939)
T ss_pred h-hccCceeecchHHHHHHHHHHccchHHHHHHHccccchhHHHHHHHHHH
Confidence 8 689999999999999999999999999999999999994 4666654
No 3
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.91 E-value=1.5e-24 Score=230.00 Aligned_cols=115 Identities=29% Similarity=0.503 Sum_probs=104.1
Q ss_pred cCCCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhhhhhccC-CCCChHHHHHHHHhccCCCccCCCC
Q 001409 509 LKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFV-PGRTQVQCRERWVNSLDPSVKRSEW 587 (1083)
Q Consensus 509 mpGRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~L-PGRT~kQCReRW~n~LdPsikkgpW 587 (1083)
+++|+..-|.. ++ .++++||+|||++|+.+|.+||..+|..||..+ ++||++|||+||.++|+|.+++++|
T Consensus 10 ~~~~~~pcc~K-------~g-lKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpW 81 (249)
T PLN03212 10 VSKKTTPCCTK-------MG-MKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGI 81 (249)
T ss_pred CCCCCCCCccc-------CC-CcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCC
Confidence 45566554433 23 478999999999999999999988999999988 5999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhccC
Q 001409 588 TEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 588 T~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Llkk 631 (1083)
|.|||.+|++++..||.+|+.||+.|||||+++|++||+.++++
T Consensus 82 T~EED~lLlel~~~~GnKWs~IAk~LpGRTDnqIKNRWns~LrK 125 (249)
T PLN03212 82 TSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRK 125 (249)
T ss_pred ChHHHHHHHHHHHhccccHHHHHhhcCCCCHHHHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999998753
No 4
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.90 E-value=3.4e-24 Score=228.18 Aligned_cols=100 Identities=30% Similarity=0.546 Sum_probs=97.2
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchhhhhhccCC-CCChHHHHHHHHhccCCCccCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 001409 531 RQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKV 609 (1083)
Q Consensus 531 rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LP-GRT~kQCReRW~n~LdPsikkgpWT~EEDekLLelVke~G~kWskI 609 (1083)
.+|+||+|||.+|+.+|..||.++|..|++.++ +|++++||.||.|||+|.++++.||+|||..|++++..+|++|+.|
T Consensus 8 ~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNrWs~I 87 (238)
T KOG0048|consen 8 VKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNRWSLI 87 (238)
T ss_pred cCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcHHHHH
Confidence 469999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHhcc
Q 001409 610 ASALPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 610 Ak~LpGRTd~QCRnRWk~Llk 630 (1083)
|++|||||++.++|+|+..++
T Consensus 88 A~~LPGRTDNeIKN~Wnt~lk 108 (238)
T KOG0048|consen 88 AGRLPGRTDNEVKNHWNTHLK 108 (238)
T ss_pred HhhCCCcCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 5
>PLN03091 hypothetical protein; Provisional
Probab=99.89 E-value=1.7e-23 Score=235.43 Aligned_cols=102 Identities=31% Similarity=0.641 Sum_probs=98.0
Q ss_pred ccCCCCChhHHHHHHHHHHhcCCchhhhhhccCC-CCChHHHHHHHHhccCCCccCCCCCHHHHHHHHHHHHHhCCCHHH
Q 001409 530 ERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSK 608 (1083)
Q Consensus 530 ~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LP-GRT~kQCReRW~n~LdPsikkgpWT~EEDekLLelVke~G~kWsk 608 (1083)
.++|+||+|||++|+.+|.+||..+|..||..++ +|+++|||+||.++|+|.+++++||.|||.+|++++..||.+|+.
T Consensus 12 lrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnKWsk 91 (459)
T PLN03091 12 LRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNRWSQ 91 (459)
T ss_pred CcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcchHH
Confidence 5789999999999999999999999999999885 999999999999999999999999999999999999999999999
Q ss_pred HhhhCCCCCHHHHHHHHHHhccC
Q 001409 609 VASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 609 IAk~LpGRTd~QCRnRWk~Llkk 631 (1083)
||+.|||||+++||+||+.++++
T Consensus 92 IAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 92 IAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998653
No 6
>PLN03212 Transcription repressor MYB5; Provisional
Probab=99.86 E-value=2.1e-22 Score=213.75 Aligned_cols=106 Identities=32% Similarity=0.591 Sum_probs=99.4
Q ss_pred CcCcCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhc-CCCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCC
Q 001409 474 NACILRREWTKEEDEQLRIAVEAYGESNWQSVASTL-KGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGP 552 (1083)
Q Consensus 474 np~lkKgkWT~EEDekLleLVek~G~~nW~kIA~~m-pGRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~ 552 (1083)
...+++++||+|||++|+++|.+||..+|..||..| ++|++.||+.||.++|+|.+ .+|+||.|||++|+.++..||
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I-~kgpWT~EED~lLlel~~~~G- 97 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSV-KRGGITSDEEDLILRLHRLLG- 97 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhc-ccCCCChHHHHHHHHHHHhcc-
Confidence 356889999999999999999999988999999998 59999999999999999995 789999999999999999999
Q ss_pred chhhhhhccCCCCChHHHHHHHHhccCCC
Q 001409 553 RNWKKIAQFVPGRTQVQCRERWVNSLDPS 581 (1083)
Q Consensus 553 ~nWskIAk~LPGRT~kQCReRW~n~LdPs 581 (1083)
..|..||..|||||+.+|+.||+.+|...
T Consensus 98 nKWs~IAk~LpGRTDnqIKNRWns~LrK~ 126 (249)
T PLN03212 98 NRWSLIAGRIPGRTDNEIKNYWNTHLRKK 126 (249)
T ss_pred ccHHHHHhhcCCCCHHHHHHHHHHHHhHH
Confidence 78999999999999999999999887654
No 7
>PLN03091 hypothetical protein; Provisional
Probab=99.84 E-value=1.5e-21 Score=219.72 Aligned_cols=106 Identities=29% Similarity=0.631 Sum_probs=99.2
Q ss_pred cCcCcCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC-CCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcC
Q 001409 473 LNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFG 551 (1083)
Q Consensus 473 Lnp~lkKgkWT~EEDekLleLVek~G~~nW~kIA~~mp-GRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG 551 (1083)
+...+++++||+|||++|+++|.+||..+|..||..|+ +|+++||+.||.++|+|.+ ++|+||.|||.+|+.++..||
T Consensus 8 ~KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~I-kKgpWT~EED~lLLeL~k~~G 86 (459)
T PLN03091 8 YKQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDL-KRGTFSQQEENLIIELHAVLG 86 (459)
T ss_pred cCCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcc-cCCCCCHHHHHHHHHHHHHhC
Confidence 34678899999999999999999999999999999985 9999999999999999995 789999999999999999999
Q ss_pred CchhhhhhccCCCCChHHHHHHHHhccCC
Q 001409 552 PRNWKKIAQFVPGRTQVQCRERWVNSLDP 580 (1083)
Q Consensus 552 ~~nWskIAk~LPGRT~kQCReRW~n~LdP 580 (1083)
..|..||..|||||+.+|+.||+..|..
T Consensus 87 -nKWskIAk~LPGRTDnqIKNRWnslLKK 114 (459)
T PLN03091 87 -NRWSQIAAQLPGRTDNEIKNLWNSCLKK 114 (459)
T ss_pred -cchHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 7899999999999999999999987654
No 8
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=99.80 E-value=7.3e-20 Score=195.11 Aligned_cols=100 Identities=28% Similarity=0.633 Sum_probs=95.7
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcC-CCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchh
Q 001409 477 ILRREWTKEEDEQLRIAVEAYGESNWQSVASTLK-GRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNW 555 (1083)
Q Consensus 477 lkKgkWT~EEDekLleLVek~G~~nW~kIA~~mp-GRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nW 555 (1083)
+.+|+||+|||++|+.+|..||..+|..|++.++ +|++++||.||.++|+|.+ ++|.||+|||.+|+++...|| +.|
T Consensus 7 ~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~i-krg~fT~eEe~~Ii~lH~~~G-NrW 84 (238)
T KOG0048|consen 7 LVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDL-KRGNFSDEEEDLIIKLHALLG-NRW 84 (238)
T ss_pred ccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCc-cCCCCCHHHHHHHHHHHHHHC-cHH
Confidence 4579999999999999999999999999999999 9999999999999999995 789999999999999999999 789
Q ss_pred hhhhccCCCCChHHHHHHHHhcc
Q 001409 556 KKIAQFVPGRTQVQCRERWVNSL 578 (1083)
Q Consensus 556 skIAk~LPGRT~kQCReRW~n~L 578 (1083)
..||.+|||||+..++..|+..|
T Consensus 85 s~IA~~LPGRTDNeIKN~Wnt~l 107 (238)
T KOG0048|consen 85 SLIAGRLPGRTDNEVKNHWNTHL 107 (238)
T ss_pred HHHHhhCCCcCHHHHHHHHHHHH
Confidence 99999999999999999997666
No 9
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.76 E-value=3.3e-18 Score=199.53 Aligned_cols=239 Identities=22% Similarity=0.459 Sum_probs=194.7
Q ss_pred CCCCCHHHHHhhcCCCCCHHHHHHHHHhhcCCC----CC--------CCCCCHHHHHHHHHHHHHh----CCC-------
Q 001409 391 LPKVNWDQVASMYVQGRSGAECEARWLNFEDPL----IN--------HNPWTVEEEKSLLLIIQEK----GIT------- 447 (1083)
Q Consensus 391 l~kiDW~kIA~~~lp~RSa~ECr~RW~n~ldP~----in--------kgkWTkEEDekLleLVek~----G~~------- 447 (1083)
.++++|..|+.. +..++...|+ .|.++..-. +. .+.|+.+|+..|-..|..| |..
T Consensus 263 ~~~~~~~~~~~~-l~a~~~ka~~-~~~~y~k~~~t~s~~~~~~~e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~ 340 (607)
T KOG0051|consen 263 TPNVSEDSVLRY-LRADSNKAGD-EWLNYEKDDATGSTGRTKEDEINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQR 340 (607)
T ss_pred ccCccHHHHHHH-HHhhhcccch-hhhccccccccCccccchhhhhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhh
Confidence 568899999864 5666777775 455554322 33 3789999999999998765 110
Q ss_pred ----C--------HHHHHHHhCCCCCHHHHHHHHHhhcCcCc-CCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCc
Q 001409 448 ----D--------WFDIAASLGTNRTPFQCLARYQRSLNACI-LRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTG 514 (1083)
Q Consensus 448 ----d--------W~kIA~~LGtnRTp~QC~~Rwqr~Lnp~l-kKgkWT~EEDekLleLVek~G~~nW~kIA~~mpGRT~ 514 (1083)
+ |..|...|.. |+...++.+-++.+++.- .+|.||+||++.|..+|..+|. .|..|+..| ||.+
T Consensus 341 i~s~~~~~~~~~l~n~~~~~Lp~-R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~l-gr~P 417 (607)
T KOG0051|consen 341 IWSKDWKTIIRNLYNNLYKLLPY-RDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVVEHGN-DWKEIGKAL-GRMP 417 (607)
T ss_pred eeccCcchHHHHHHHhhhhhcCc-ccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHHHhcc-cHHHHHHHH-ccCc
Confidence 1 5677778855 999999998888888766 8999999999999999999995 999999999 8999
Q ss_pred cccccccccCCCCcc-ccCCCCChhHHHHHHHHHH-------hc------------------CCchhhhhhccCCCCChH
Q 001409 515 TQCSNRWNKTLHPSR-ERQGRWNPDEDQRLIVATM-------LF------------------GPRNWKKIAQFVPGRTQV 568 (1083)
Q Consensus 515 ~QCr~RW~~~Lnp~i-~rKG~WT~EEDekLLeaV~-------ky------------------G~~nWskIAk~LPGRT~k 568 (1083)
..|+.||+++..++- ..+|.||.+|.+.|+.+|. .| ..++|..|++.+++|+..
T Consensus 418 ~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~ 497 (607)
T KOG0051|consen 418 MDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRI 497 (607)
T ss_pred HHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcc
Confidence 999999999998872 2679999999999999995 33 236899999999999999
Q ss_pred HHHHHHHhcc-CCCccCCCCCH-HHHHHHHHHHHHhC------CCHHHHhhhCCCCC-HHHHHHHHHHhccCcch
Q 001409 569 QCRERWVNSL-DPSVKRSEWTE-QEDLRLEAAIKEHG------YCWSKVASALPSRT-DNQCWRRWKALHPEAVP 634 (1083)
Q Consensus 569 QCReRW~n~L-dPsikkgpWT~-EEDekLLelVke~G------~kWskIAk~LpGRT-d~QCRnRWk~Llkk~~~ 634 (1083)
|||.+|+.++ .|..+.+.|.. .+.-.|++-+..++ ++|..|+...||.+ ..+|+.+|..|...+..
T Consensus 498 qCr~Kw~kl~~~~s~n~~~~~~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~~I~~ 572 (607)
T KOG0051|consen 498 QCRYKWYKLTTSPSFNKRQESKGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGESTGEELRLQFERLKKKIPG 572 (607)
T ss_pred hHHHHHHHHHhhHHhhcccccccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCCcHHHHHHHHHhHhhccCC
Confidence 9999999987 46667777776 46667777776665 58999999999998 99999999999876443
No 10
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=99.76 E-value=6.5e-18 Score=197.06 Aligned_cols=227 Identities=23% Similarity=0.405 Sum_probs=180.3
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCchhhHHHHhhhcccccChHHHhhhCCCCCHHHHHhhcC
Q 001409 325 HRKKWSKKENENLRKGIRQQFQEMMLQLSVDRFSVPEGSATDTNSLDSILASIKDLEVTPEMIRDFLPKVNWDQVASMYV 404 (1083)
Q Consensus 325 ~~kkWSkkE~e~LrkaVkqqlqe~lLk~~~~r~S~~E~~~~d~~~Ld~l~~qIkdleltpE~irq~l~kiDW~kIA~~~l 404 (1083)
..+.++++|..+|.+.|..++.-..+... .+...|..-.- +-.++. .|..|... +
T Consensus 307 ~~~~F~~eed~ale~~V~~y~~~eg~s~~------------------q~~~~i~s~~~-~~~~~~-----l~n~~~~~-L 361 (607)
T KOG0051|consen 307 NLKKFSKEEDAALENFVNEYLANEGWSSE------------------QFCQRIWSKDW-KTIIRN-----LYNNLYKL-L 361 (607)
T ss_pred hhhhccHHHHHHHHHHHHHHHHhhCcchh------------------hhhhheeccCc-chHHHH-----HHHhhhhh-c
Confidence 45677999999999999998865533211 00011111000 112333 39999866 7
Q ss_pred CCCCHHHHHHHHHhhcCCCC-CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCc--CCCC
Q 001409 405 QGRSGAECEARWLNFEDPLI-NHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACI--LRRE 481 (1083)
Q Consensus 405 p~RSa~ECr~RW~n~ldP~i-nkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~l--kKgk 481 (1083)
|.|+....|..-++.++|.- .+|.||+||++.|..++.+|| .+|.+|+..|| |.|..|++||+++...+- .++.
T Consensus 362 p~R~~~siy~~~rR~y~~FE~~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~lg--r~P~~crd~wr~~~~~g~~~~r~~ 438 (607)
T KOG0051|consen 362 PYRDRKSIYHHLRRAYTPFENKRGKWTPEEEEELKKLVVEHG-NDWKEIGKALG--RMPMDCRDRWRQYVKCGSKRNRGA 438 (607)
T ss_pred CcccchhHHHHHHhcCCccccccCCCCcchHHHHHHHHHHhc-ccHHHHHHHHc--cCcHHHHHHHHHhhccccccccCc
Confidence 77999999998888888886 899999999999999999999 89999999996 999999999999988774 8899
Q ss_pred CCHHHHHHHHHHHHH-------h------------------CCCChhhhhhhcCCCCccccccccccCCCCccccCCCCC
Q 001409 482 WTKEEDEQLRIAVEA-------Y------------------GESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWN 536 (1083)
Q Consensus 482 WT~EEDekLleLVek-------~------------------G~~nW~kIA~~mpGRT~~QCr~RW~~~Lnp~i~rKG~WT 536 (1083)
||.||.+.|+++|.. + ..++|..|++.+++|+..||+.+|..++.......+.|.
T Consensus 439 Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~~~~~ 518 (607)
T KOG0051|consen 439 WSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNKRQES 518 (607)
T ss_pred chHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhccccc
Confidence 999999999999961 2 246899999999999999999999998876555677777
Q ss_pred h-hHHHHHHHHHHhc-----CCchhhhhhccCCCCC-hHHHHHHHHhccC
Q 001409 537 P-DEDQRLIVATMLF-----GPRNWKKIAQFVPGRT-QVQCRERWVNSLD 579 (1083)
Q Consensus 537 ~-EEDekLLeaV~ky-----G~~nWskIAk~LPGRT-~kQCReRW~n~Ld 579 (1083)
. .+...|++-+..+ +..+|..|+...||.. +.+|+.+|.++..
T Consensus 519 ~~~~~v~l~ErL~dl~~~e~~~IDW~~l~~~~~g~~~~~e~r~q~~~lk~ 568 (607)
T KOG0051|consen 519 KGSDMVWLLERLSDLDLTEESPIDWKSLAEYAPGESTGEELRLQFERLKK 568 (607)
T ss_pred ccchhHHHHHHHHhcccccCCccCHHHHHHhCCCCCcHHHHHHHHHhHhh
Confidence 6 3555666666554 4578999999999998 9999999987653
No 11
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=3.7e-19 Score=201.81 Aligned_cols=199 Identities=26% Similarity=0.345 Sum_probs=156.7
Q ss_pred ccCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccCCCccCCCCCHHHHHHHHHHHHHhCCCHHHH
Q 001409 530 ERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKV 609 (1083)
Q Consensus 530 ~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~LdPsikkgpWT~EEDekLLelVke~G~kWskI 609 (1083)
.+.|.|+..||++|..+|++||.+.|+.|++.++-.+..||+.||..+|+|.+++..|+.+||++||+++......|..|
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI 84 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI 84 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence 36789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHhccCcchhhHHH-HHHHhhhhhhccc----cccccCCCCCCCCCCCcccccccCCCCCCchh
Q 001409 610 ASALPSRTDNQCWRRWKALHPEAVPLFLEA-KKIQKTALVSNFV----DRERERPALRPNDFIPIPMLESAFQPEEPNAS 684 (1083)
Q Consensus 610 Ak~LpGRTd~QCRnRWk~Llkk~~~~~~~a-rk~~k~~~~~nfv----~r~~erPal~~~D~~pLpml~sa~~~~a~t~~ 684 (1083)
+..| |||.+||..||+.++-......... ...--. +...-. .-...||.-..-|-+.+.|+..++++.++++|
T Consensus 85 a~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~r-Lk~gE~ePn~e~~~aRpd~~dmdEde~eMl~eaRarlaNt~g 162 (617)
T KOG0050|consen 85 ADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAK-LKEGEIEPNQETNPARPDGFDMDEDEGEMLSEARARLANTQG 162 (617)
T ss_pred HHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccc-cCCCcCCCccccccccCCcccchHHHHHHHHHHHHHHhcccc
Confidence 9999 9999999999999864322111100 000000 000000 01122333333344556899999999999999
Q ss_pred hhhhcccCCCCC--------CCCcccccccccccCccccccccccccccccccc
Q 001409 685 KKRKRKSSRKPE--------SGKENDDCNTQKKIKPNRCRKEAEVCSEEVLGIT 730 (1083)
Q Consensus 685 KK~KRK~S~k~~--------~q~~n~~~~~~Kk~~~kk~rk~~~~~~~ev~~~~ 730 (1083)
||++||.++++. .|+++..++...-.+.+|++++...|+.++++-.
T Consensus 163 kka~Rk~reK~l~e~~r~~~lqkrrelraagi~~~~rkr~~~~Idyn~~ipfek 216 (617)
T KOG0050|consen 163 KKAKRKLREKQLEEPRRGAPLQKRRELRAAGILRTTRKRLSHLIDYNISIPFEK 216 (617)
T ss_pred hHHHHHHHHHHHhhccCCccchhHHHHHhhhhhHHhHhhhhccCCccccccccc
Confidence 999999998884 4555666777777888899999999999998754
No 12
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.67 E-value=8.2e-17 Score=186.50 Aligned_cols=232 Identities=25% Similarity=0.536 Sum_probs=191.6
Q ss_pred CCCHHHHHhhcCCCCCHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhh
Q 001409 393 KVNWDQVASMYVQGRSGAECEARWLNFEDPLINHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRS 472 (1083)
Q Consensus 393 kiDW~kIA~~~lp~RSa~ECr~RW~n~ldP~inkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~ 472 (1083)
..+|..||.. +..+++.+|..||.++++|.++++.|+.+||+.|+.+...+| ..|..||..++ +|+..+|+.||.+.
T Consensus 40 ~nnws~vas~-~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~-~~wstia~~~d-~rt~~~~~ery~~~ 116 (512)
T COG5147 40 PNNWSKVASL-LISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELG-TQWSTIADYKD-RRTAQQCVERYVNT 116 (512)
T ss_pred cccHHHHHHH-hcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcC-chhhhhccccC-ccchHHHHHHHHHH
Confidence 3459999987 445999999999999999999999999999999999999999 67999999995 69999999999955
Q ss_pred cCcC----------------------------------------------------------------------------
Q 001409 473 LNAC---------------------------------------------------------------------------- 476 (1083)
Q Consensus 473 Lnp~---------------------------------------------------------------------------- 476 (1083)
+...
T Consensus 117 ~~~~~s~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv~~~~vk~~~~~~~~~~~~~~~qe 196 (512)
T COG5147 117 LEDLSSTHDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQE 196 (512)
T ss_pred hhhhhccccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccchHhhhhHHhhcccccccHHHHHH
Confidence 4221
Q ss_pred ---------------c--------CCCCCCHHHHHHHHHHHHHhCC-----------------CChhhhhhhcCCCCccc
Q 001409 477 ---------------I--------LRREWTKEEDEQLRIAVEAYGE-----------------SNWQSVASTLKGRTGTQ 516 (1083)
Q Consensus 477 ---------------l--------kKgkWT~EEDekLleLVek~G~-----------------~nW~kIA~~mpGRT~~Q 516 (1083)
. -...||...++.+-..++..|. ..|.-|-..+++|+...
T Consensus 197 m~~~~~~s~~~~~~~~~~~~~~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~Iws~~~~~~~f~~n~~~~l~~R~~ks 276 (512)
T COG5147 197 MKELKSASITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKS 276 (512)
T ss_pred HhHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHhcccHHHHHhhccccccccccccchhhcccccccccc
Confidence 0 0123555555555555555432 24666666777888888
Q ss_pred cccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccCC--CccCCCCCHHHHHH
Q 001409 517 CSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDP--SVKRSEWTEQEDLR 594 (1083)
Q Consensus 517 Cr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~LdP--sikkgpWT~EEDek 594 (1083)
.+.+-++.+++. ...|.||.+|+..|...+..+| +.|..|...+ +|-+..||+||.++..+ ..++++|+.+|+.+
T Consensus 277 iy~~~rrky~~f-~~~~~wt~e~~~eL~~~~~~~~-~~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~ 353 (512)
T COG5147 277 IYKHLRRKYNIF-EQRGKWTKEEEQELAKLVVEHG-GSWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEEL 353 (512)
T ss_pred hHHHHHHhhhHH-hhhccCcccccccccccccccc-chhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhh
Confidence 888888878876 4679999999999999999999 8999999888 99999999999999987 67788999999999
Q ss_pred HHHHHHHh--------CCCHHHHhhhCCCCCHHHHHHHHHHhcc
Q 001409 595 LEAAIKEH--------GYCWSKVASALPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 595 LLelVke~--------G~kWskIAk~LpGRTd~QCRnRWk~Llk 630 (1083)
|...+.+. -..|..|+..+++|...+|+..|..+..
T Consensus 354 l~~vv~e~~~~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~ 397 (512)
T COG5147 354 LDKVVNEMRLEAQQSSRILWLLIAQNIRNRLQHHCRDKYGVLIS 397 (512)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHhhhccccCCCCCccccccc
Confidence 98887632 1489999999999999999998888765
No 13
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=99.47 E-value=4.6e-14 Score=163.98 Aligned_cols=205 Identities=24% Similarity=0.435 Sum_probs=171.7
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHHHHHHHHhCCCChh
Q 001409 424 INHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQ 503 (1083)
Q Consensus 424 inkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekLleLVek~G~~nW~ 503 (1083)
...|.|+..||+.|..+|+.+|.++|..||..|+ .+++.+|..||...+++.++++.|+.|||..|+.+-..+|. .|.
T Consensus 18 ~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~-~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~-~ws 95 (512)
T COG5147 18 RKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLI-SSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGT-QWS 95 (512)
T ss_pred ecCCCCCCcchhHHHHHHhhcccccHHHHHHHhc-ccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCc-hhh
Confidence 5678999999999999999999999999999996 49999999999999999999999999999999999999996 699
Q ss_pred hhhhhcCCCCccccccccccCCCCc-------------------------------------------------------
Q 001409 504 SVASTLKGRTGTQCSNRWNKTLHPS------------------------------------------------------- 528 (1083)
Q Consensus 504 kIA~~mpGRT~~QCr~RW~~~Lnp~------------------------------------------------------- 528 (1083)
.||..+++|+..+|..||.+++.+.
T Consensus 96 tia~~~d~rt~~~~~ery~~~~~~~~s~~~s~~~~~~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv~~ 175 (512)
T COG5147 96 TIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSK 175 (512)
T ss_pred hhccccCccchHHHHHHHHHHhhhhhccccccccchhhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccchH
Confidence 9999999999999999998544110
Q ss_pred --------------------------------------cc-----cCCCCChhHHHHHHHHHHhcCC-------------
Q 001409 529 --------------------------------------RE-----RQGRWNPDEDQRLIVATMLFGP------------- 552 (1083)
Q Consensus 529 --------------------------------------i~-----rKG~WT~EEDekLLeaV~kyG~------------- 552 (1083)
.. -+--|+...++.+-..++.+|-
T Consensus 176 ~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~~~~~~~~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~Iws~~ 255 (512)
T COG5147 176 ADVKPREKGEENNPDIEDLQEMKELKSASITRHLILPSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTD 255 (512)
T ss_pred hhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhhhhhhhhccccchhHHHHHHHHHHHHHHHhcccHHHHHhhccccc
Confidence 00 0112555555555445544442
Q ss_pred ----chhhhhhccCCCCChHHHHHHHHhccCCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 553 ----RNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 553 ----~nWskIAk~LPGRT~kQCReRW~n~LdPsikkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
..|..|-..+++|+.+....+-...+.+--.++.||.+|+..|-.++.++|..|..|...+ ||-++.|+.||+..
T Consensus 256 ~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~~~wt~e~~~eL~~~~~~~~~~w~~ig~~~-~rmp~~crd~wr~~ 334 (512)
T COG5147 256 RDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQRGKWTKEEEQELAKLVVEHGGSWTEIGKLL-GRMPNDCRDRWRDY 334 (512)
T ss_pred cccccccchhhcccccccccchHHHHHHhhhHHhhhccCccccccccccccccccchhhHhhhhh-ccCcHHHHHHHhhh
Confidence 2366666777788888888777777777788999999999999999999999999999988 99999999999987
Q ss_pred ccC
Q 001409 629 HPE 631 (1083)
Q Consensus 629 lkk 631 (1083)
+.-
T Consensus 335 ~~~ 337 (512)
T COG5147 335 VKC 337 (512)
T ss_pred ccc
Confidence 654
No 14
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.36 E-value=1e-12 Score=111.86 Aligned_cols=60 Identities=45% Similarity=0.933 Sum_probs=55.0
Q ss_pred CChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccCCCccCCCCCHHHHHHH
Q 001409 535 WNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRL 595 (1083)
Q Consensus 535 WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~LdPsikkgpWT~EEDekL 595 (1083)
||.+||.+|+.+|..|| .+|..||..|+.||..||+.||.+.|.+.+.+++||.+||.+|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 7999999999779999999999999999999999999999987
No 15
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=99.34 E-value=3.2e-12 Score=108.89 Aligned_cols=60 Identities=50% Similarity=0.883 Sum_probs=54.7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHH
Q 001409 429 WTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQL 490 (1083)
Q Consensus 429 WTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekL 490 (1083)
||+|||+.|+.++..|| .+|..||..|| +||+.+|+.||...|.+...+++||++||++|
T Consensus 1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~-~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L 60 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYG-NDWKKIAEHLG-NRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL 60 (60)
T ss_dssp S-HHHHHHHHHHHHHHT-S-HHHHHHHST-TS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHC-cCHHHHHHHHC-cCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence 99999999999999999 79999999996 79999999999998999999999999999987
No 16
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.02 E-value=2.2e-10 Score=94.36 Aligned_cols=47 Identities=49% Similarity=0.948 Sum_probs=42.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhhhhhccCC-CCChHHHHHHHHhcc
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVP-GRTQVQCRERWVNSL 578 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nWskIAk~LP-GRT~kQCReRW~n~L 578 (1083)
+++||++||.+|+++|..||..+|..||..|| +||..||+.||+++|
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999777999999999 999999999999875
No 17
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=99.02 E-value=8e-11 Score=135.05 Aligned_cols=143 Identities=29% Similarity=0.522 Sum_probs=114.1
Q ss_pred cCCCCCCHHHHHHHHHHHHHhCCCChhhhhhhcCCCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhh
Q 001409 477 ILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWK 556 (1083)
Q Consensus 477 lkKgkWT~EEDekLleLVek~G~~nW~kIA~~mpGRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWs 556 (1083)
++.|.|+.-||+.|..+|.+||...|..|+..+.-.+..||+.||..+++|.+ ++..|+.+||++|+-+...+. ..|.
T Consensus 5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i-~~tews~eederlLhlakl~p-~qwr 82 (617)
T KOG0050|consen 5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAI-KKTEWSREEDERLLHLAKLEP-TQWR 82 (617)
T ss_pred EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHH-hhhhhhhhHHHHHHHHHHhcC-Cccc
Confidence 45689999999999999999999999999999999999999999999999996 667799999999999999998 8999
Q ss_pred hhhccCCCCChHHHHHHHHhccCCCccCC----------CCCHHHH-HHHHHHHHHhCCCHHHHhhhCCCCCHHHHHH
Q 001409 557 KIAQFVPGRTQVQCRERWVNSLDPSVKRS----------EWTEQED-LRLEAAIKEHGYCWSKVASALPSRTDNQCWR 623 (1083)
Q Consensus 557 kIAk~LPGRT~kQCReRW~n~LdPsikkg----------pWT~EED-ekLLelVke~G~kWskIAk~LpGRTd~QCRn 623 (1083)
-|+..| ||+..||-+||.+.|+..+... -|-.|-+ ..+...+.-.|.+|..+-..| .++...|..
T Consensus 83 tIa~i~-gr~~~qc~eRy~~ll~~~~s~~~~~~~~~D~rLk~gE~ePn~e~~~aRpd~~dmdEde~eM-l~eaRarla 158 (617)
T KOG0050|consen 83 TIADIM-GRTSQQCLERYNNLLDVYVSYHYHSEPYIDAKLKEGEIEPNQETNPARPDGFDMDEDEGEM-LSEARARLA 158 (617)
T ss_pred hHHHHh-hhhHHHHHHHHHHHHHHHHhhhcccccccccccCCCcCCCccccccccCCcccchHHHHHH-HHHHHHHHh
Confidence 999998 9999999999998875422211 1333333 334455555566676666655 445544433
No 18
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=98.95 E-value=9.9e-10 Score=90.49 Aligned_cols=46 Identities=43% Similarity=0.801 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC-HHHHhhhCC-CCCHHHHHHHHHHhc
Q 001409 584 RSEWTEQEDLRLEAAIKEHGYC-WSKVASALP-SRTDNQCWRRWKALH 629 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~G~k-WskIAk~Lp-GRTd~QCRnRWk~Ll 629 (1083)
+++||.+||.+|++++.+||.. |..||..|| |||..||++||..++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence 5789999999999999999998 999999999 999999999999863
No 19
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.73 E-value=2.5e-08 Score=79.17 Aligned_cols=47 Identities=45% Similarity=0.835 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHhhhCCCCCHHHHHHHHHHhcc
Q 001409 584 RSEWTEQEDLRLEAAIKEHG-YCWSKVASALPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~G-~kWskIAk~LpGRTd~QCRnRWk~Llk 630 (1083)
+++||.+|+.+|+.++..+| .+|..||..|++||..+|++||..+.+
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 36899999999999999999 899999999999999999999998764
No 20
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.61 E-value=4.9e-08 Score=77.48 Aligned_cols=48 Identities=50% Similarity=0.964 Sum_probs=44.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccC
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLD 579 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~Ld 579 (1083)
++.||++||.+|+.++..||..+|..||..+++||..+|+.||.+++.
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence 368999999999999999998899999999999999999999998764
No 21
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.57 E-value=1.2e-07 Score=74.27 Aligned_cols=43 Identities=49% Similarity=0.914 Sum_probs=41.4
Q ss_pred CCCHHHHHHHHHHHHHhC-CCHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 586 EWTEQEDLRLEAAIKEHG-YCWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 586 pWT~EEDekLLelVke~G-~kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
+||.+|+..|+.++..+| .+|..||..+++||..+|++||..+
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~ 44 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNL 44 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHh
Confidence 599999999999999999 8999999999999999999999876
No 22
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.44 E-value=2.3e-07 Score=72.67 Aligned_cols=45 Identities=51% Similarity=0.976 Sum_probs=42.4
Q ss_pred CCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhcc
Q 001409 534 RWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSL 578 (1083)
Q Consensus 534 ~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L 578 (1083)
.||.+|+..|+.++..||..+|..||..+++||..+|+.||.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999999999999999999998753
No 23
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.67 E-value=0.0017 Score=75.30 Aligned_cols=49 Identities=27% Similarity=0.602 Sum_probs=45.6
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccC
Q 001409 531 RQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLD 579 (1083)
Q Consensus 531 rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~Ld 579 (1083)
-.+.||.+|+..|++++..||-+||..||.+++.|+...|+++|.+++-
T Consensus 71 ~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv 119 (438)
T KOG0457|consen 71 LDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFV 119 (438)
T ss_pred CCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHh
Confidence 3467999999999999999999999999999999999999999998763
No 24
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.51 E-value=0.007 Score=52.88 Aligned_cols=48 Identities=23% Similarity=0.286 Sum_probs=43.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCH---HHHHHHhCCCC-CHHHHHHHHHhhc
Q 001409 426 HNPWTVEEEKSLLLIIQEKGITDW---FDIAASLGTNR-TPFQCLARYQRSL 473 (1083)
Q Consensus 426 kgkWTkEEDekLleLVek~G~~dW---~kIA~~LGtnR-Tp~QC~~Rwqr~L 473 (1083)
+-.||+||...++..++.+|..+| ..|+..|+..+ |+.||..++|.+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 346999999999999999997799 99999998667 9999999999874
No 25
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=96.29 E-value=0.0062 Score=53.22 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=41.3
Q ss_pred CCCCChhHHHHHHHHHHhcCCchh---hhhhccCC-CC-ChHHHHHHHHhcc
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNW---KKIAQFVP-GR-TQVQCRERWVNSL 578 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nW---skIAk~LP-GR-T~kQCReRW~n~L 578 (1083)
+-.||+||..+++.+|..||.++| ..|++.|. .+ |..||+.++..+.
T Consensus 3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 457999999999999999997799 99998875 45 9999999988764
No 26
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=96.20 E-value=0.0053 Score=71.33 Aligned_cols=49 Identities=20% Similarity=0.528 Sum_probs=45.1
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhc
Q 001409 581 SVKRSEWTEQEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKALH 629 (1083)
Q Consensus 581 sikkgpWT~EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~Ll 629 (1083)
.+-...||.+|+..||+++..+|. +|..||.++..||..+|+.+|..+.
T Consensus 69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f 118 (438)
T KOG0457|consen 69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF 118 (438)
T ss_pred CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence 445678999999999999999998 9999999999999999999999874
No 27
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=95.58 E-value=0.013 Score=68.70 Aligned_cols=47 Identities=32% Similarity=0.518 Sum_probs=43.9
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhc
Q 001409 583 KRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALH 629 (1083)
Q Consensus 583 kkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Ll 629 (1083)
....||.+|..+|++.+..||-+|.+||.++.++|..||.-||-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHHcCC
Confidence 34589999999999999999999999999999999999999999883
No 28
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=95.28 E-value=0.023 Score=68.09 Aligned_cols=47 Identities=38% Similarity=0.620 Sum_probs=44.3
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhc
Q 001409 583 KRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALH 629 (1083)
Q Consensus 583 kkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Ll 629 (1083)
....||.+|..+||+++..||-+|.+||.++.+||..||--+|.+|=
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFLRLP 298 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHHhcC
Confidence 35789999999999999999999999999999999999999999883
No 29
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=94.94 E-value=0.024 Score=67.94 Aligned_cols=45 Identities=27% Similarity=0.617 Sum_probs=42.4
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHh
Q 001409 531 RQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVN 576 (1083)
Q Consensus 531 rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n 576 (1083)
-++.||.+|..+|+++|..|| .+|.+||.++++||..||-.++.+
T Consensus 252 ~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~ 296 (506)
T KOG1279|consen 252 ARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLR 296 (506)
T ss_pred CCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHh
Confidence 457899999999999999999 899999999999999999999985
No 30
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=94.83 E-value=0.022 Score=66.77 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=42.7
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhc
Q 001409 531 RQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNS 577 (1083)
Q Consensus 531 rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~ 577 (1083)
....||.+|..+|+++|+.|| -+|.+||.+|+++|..||-.||.+.
T Consensus 278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L 323 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL 323 (531)
T ss_pred ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence 445899999999999999999 8999999999999999999999864
No 31
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.58 E-value=0.16 Score=54.70 Aligned_cols=94 Identities=23% Similarity=0.403 Sum_probs=70.9
Q ss_pred CCChhHHHHHHHHHHhcCCchhhhhhccCC---CCChHHHHHHHHhcc-CCC--------------------ccCCCCCH
Q 001409 534 RWNPDEDQRLIVATMLFGPRNWKKIAQFVP---GRTQVQCRERWVNSL-DPS--------------------VKRSEWTE 589 (1083)
Q Consensus 534 ~WT~EEDekLLeaV~kyG~~nWskIAk~LP---GRT~kQCReRW~n~L-dPs--------------------ikkgpWT~ 589 (1083)
+|++.+|..|+.+|..-. +-..|+..+. .-|..-+.+||+..| +|. ..+.+||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 599999999999998755 4455655443 567889999999876 442 23578999
Q ss_pred HHHHHHHHHHHHhCC---CHHHHhhh-----CCCCCHHHHHHHHHHhc
Q 001409 590 QEDLRLEAAIKEHGY---CWSKVASA-----LPSRTDNQCWRRWKALH 629 (1083)
Q Consensus 590 EEDekLLelVke~G~---kWskIAk~-----LpGRTd~QCRnRWk~Ll 629 (1083)
+|++.|......... .+.+|-.. -++||+.+...+|..|.
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmk 126 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMK 126 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHH
Confidence 999999997665543 56666432 36899999999999774
No 32
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.49 E-value=0.057 Score=49.22 Aligned_cols=47 Identities=38% Similarity=0.613 Sum_probs=32.9
Q ss_pred CCCCHHHHHHHHHHHHHh--C--------C---CCHHHHHHHh---CCCCCHHHHHHHHHhhc
Q 001409 427 NPWTVEEEKSLLLIIQEK--G--------I---TDWFDIAASL---GTNRTPFQCLARYQRSL 473 (1083)
Q Consensus 427 gkWTkEEDekLleLVek~--G--------~---~dW~kIA~~L---GtnRTp~QC~~Rwqr~L 473 (1083)
..||.+|...|+.+.... . . .-|..||..| |.+||+.||..+|.++.
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~ 64 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLK 64 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 479999999999988761 1 0 1399999876 88999999999998864
No 33
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=94.35 E-value=0.028 Score=51.18 Aligned_cols=46 Identities=35% Similarity=0.661 Sum_probs=34.1
Q ss_pred CCCCHHHHHHHHHHHHH------hC--------CCHHHHhhhC----CCCCHHHHHHHHHHhcc
Q 001409 585 SEWTEQEDLRLEAAIKE------HG--------YCWSKVASAL----PSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 585 gpWT~EEDekLLelVke------~G--------~kWskIAk~L----pGRTd~QCRnRWk~Llk 630 (1083)
..||.+|...||+++.. ++ .-|..||..| ..||..||++||+.|.+
T Consensus 2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~ 65 (90)
T PF13837_consen 2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKK 65 (90)
T ss_dssp -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 57999999999999877 11 1499999886 36999999999999964
No 34
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=93.37 E-value=0.049 Score=56.59 Aligned_cols=50 Identities=24% Similarity=0.510 Sum_probs=41.4
Q ss_pred ccCCCCChhHHHHHHHHHHhc---CCc---hhhhhhccCCCCChHHHHHHHHhccCC
Q 001409 530 ERQGRWNPDEDQRLIVATMLF---GPR---NWKKIAQFVPGRTQVQCRERWVNSLDP 580 (1083)
Q Consensus 530 ~rKG~WT~EEDekLLeaV~ky---G~~---nWskIAk~LPGRT~kQCReRW~n~LdP 580 (1083)
.+...||.+||.+|-+.|-.| |.. .+..|+..+ +||...|.-||+.++..
T Consensus 2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRk 57 (161)
T TIGR02894 2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRK 57 (161)
T ss_pred ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHH
Confidence 366789999999999999877 422 477788887 99999999999998863
No 35
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=91.41 E-value=0.19 Score=52.35 Aligned_cols=54 Identities=31% Similarity=0.580 Sum_probs=44.1
Q ss_pred cCCCCCHHHHHHHHHHHHHh---C----CCHHHHhhhCCCCCHHHHHHHHHHhccCcchhhH
Q 001409 583 KRSEWTEQEDLRLEAAIKEH---G----YCWSKVASALPSRTDNQCWRRWKALHPEAVPLFL 637 (1083)
Q Consensus 583 kkgpWT~EEDekLLelVke~---G----~kWskIAk~LpGRTd~QCRnRWk~Llkk~~~~~~ 637 (1083)
....||.|||.+|-+.|-.| | .-+..++..| |||..+|-=||++.+++....-.
T Consensus 3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~~i 63 (161)
T TIGR02894 3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEEAI 63 (161)
T ss_pred cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHHHH
Confidence 45689999999998888765 3 2588899999 99999999999999886554433
No 36
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=91.32 E-value=0.21 Score=44.88 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=33.5
Q ss_pred CCCChhHHHHHHHHHHhc--------CCchhhhhhccCC-CCChHHHHHHHHhccCCC
Q 001409 533 GRWNPDEDQRLIVATMLF--------GPRNWKKIAQFVP-GRTQVQCRERWVNSLDPS 581 (1083)
Q Consensus 533 G~WT~EEDekLLeaV~ky--------G~~nWskIAk~LP-GRT~kQCReRW~n~LdPs 581 (1083)
.+||.+||.+|+..|..+ |..-|..+++..+ .+|-...|+||...|.+.
T Consensus 3 ~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 3 TPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp ----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 479999999999999654 2234999998888 899999999999988654
No 37
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=90.97 E-value=0.15 Score=57.74 Aligned_cols=46 Identities=26% Similarity=0.583 Sum_probs=44.2
Q ss_pred CCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhccC
Q 001409 534 RWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLD 579 (1083)
Q Consensus 534 ~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~Ld 579 (1083)
.|+..|+..|+++....|-+||..||..++.|+...|+++|..++.
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~ 110 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD 110 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence 5999999999999999999999999999999999999999999876
No 38
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=89.46 E-value=0.35 Score=54.95 Aligned_cols=48 Identities=19% Similarity=0.420 Sum_probs=43.6
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhc
Q 001409 582 VKRSEWTEQEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKALH 629 (1083)
Q Consensus 582 ikkgpWT~EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~Ll 629 (1083)
+--..|+.+|+..|++.....|. +|..||.+++.|+...|+.+|..+.
T Consensus 61 I~~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y 109 (432)
T COG5114 61 IGEEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMY 109 (432)
T ss_pred ccCCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 33457999999999999999998 9999999998899999999998764
No 39
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=89.18 E-value=0.15 Score=45.91 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=33.5
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCChhhhhhhcC-CCCccccccccccCCCCc
Q 001409 479 RREWTKEEDEQLRIAVEAY--------GESNWQSVASTLK-GRTGTQCSNRWNKTLHPS 528 (1083)
Q Consensus 479 KgkWT~EEDekLleLVek~--------G~~nW~kIA~~mp-GRT~~QCr~RW~~~Lnp~ 528 (1083)
+-++|.|||+.|+..|..+ |+.-|..+++..+ .+|.++-++||.+.|.+.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~ 60 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGR 60 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT---
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 4589999999999999764 2234999999888 999999999999887653
No 40
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.62 E-value=1.4 Score=57.42 Aligned_cols=141 Identities=13% Similarity=0.210 Sum_probs=77.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCCCCCCHHHHHHHHHHHHHhCCC--Chhhh
Q 001409 428 PWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGES--NWQSV 505 (1083)
Q Consensus 428 kWTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkKgkWT~EEDekLleLVek~G~~--nW~kI 505 (1083)
.||.-+-..++....+||..+-..||..|+ +.|+..+.....- +-..... -.+-++++.-+++.... .-..+
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~-~k~~~ev~~y~~~-f~~~~~~----~~~~~~~~~~ie~~e~~~~~~~~~ 899 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEME-GKTEEEVERYAKV-FWERYKE----LNDYDRIIKNIERGEARISRKDEI 899 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhc-CCCHHHHHHHHHH-HHHhhhh----hccHHHHHHHHHHHHHHHHHHHHH
Confidence 477777777777777788778888999985 5888887643322 2111110 11123333333221100 00000
Q ss_pred hhhcCCCCccccccccccCC-CCccccCCCCChhHHHHHHHHHHhcCCchhhhhhcc------------CCCCChHHHHH
Q 001409 506 ASTLKGRTGTQCSNRWNKTL-HPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQF------------VPGRTQVQCRE 572 (1083)
Q Consensus 506 A~~mpGRT~~QCr~RW~~~L-np~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~------------LPGRT~kQCRe 572 (1083)
...+ .+-..+|..-|..+. ..+..++..||.+||.-|+-.+.+||..+|..|-.. +..||+..+..
T Consensus 900 ~~~~-~~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~ 978 (1033)
T PLN03142 900 MKAI-GKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELAR 978 (1033)
T ss_pred HHHH-HHHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHH
Confidence 0001 122233434442211 111124456999999999999999999999999543 23677777777
Q ss_pred HHH
Q 001409 573 RWV 575 (1083)
Q Consensus 573 RW~ 575 (1083)
|-.
T Consensus 979 r~~ 981 (1033)
T PLN03142 979 RCD 981 (1033)
T ss_pred HHH
Confidence 764
No 41
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=88.42 E-value=1.7 Score=56.81 Aligned_cols=99 Identities=24% Similarity=0.360 Sum_probs=76.8
Q ss_pred CCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHH-------HHHhccC---------------------------
Q 001409 534 RWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRE-------RWVNSLD--------------------------- 579 (1083)
Q Consensus 534 ~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCRe-------RW~n~Ld--------------------------- 579 (1083)
.|+.-+=..++.+..+||-.+...||..|.|+|...++. ||..+-+
T Consensus 826 ~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~~ 905 (1033)
T PLN03142 826 TWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIGK 905 (1033)
T ss_pred cccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 488888888888889999889999999999999877763 2211000
Q ss_pred ----------------CCccCCCCCHHHHHHHHHHHHHhCC-CHHHHhhh------------CCCCCHHHHHHHHHHhcc
Q 001409 580 ----------------PSVKRSEWTEQEDLRLEAAIKEHGY-CWSKVASA------------LPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 580 ----------------PsikkgpWT~EEDekLLelVke~G~-kWskIAk~------------LpGRTd~QCRnRWk~Llk 630 (1083)
+..+...||.+||..|+-.+.+||. .|..|-.. |..||+..+.+|-..|+.
T Consensus 906 k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~ 985 (1033)
T PLN03142 906 KLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIR 985 (1033)
T ss_pred HHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHH
Confidence 1223456999999999999999996 89999543 358999999999999976
Q ss_pred Cc
Q 001409 631 EA 632 (1083)
Q Consensus 631 k~ 632 (1083)
-.
T Consensus 986 ~~ 987 (1033)
T PLN03142 986 LI 987 (1033)
T ss_pred HH
Confidence 43
No 42
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=88.05 E-value=0.83 Score=49.32 Aligned_cols=95 Identities=26% Similarity=0.419 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCChhhhhhhcC---CCCccccccccccCC----------------CC----ccccCCCCCh
Q 001409 481 EWTKEEDEQLRIAVEAYGESNWQSVASTLK---GRTGTQCSNRWNKTL----------------HP----SRERQGRWNP 537 (1083)
Q Consensus 481 kWT~EEDekLleLVek~G~~nW~kIA~~mp---GRT~~QCr~RW~~~L----------------np----~i~rKG~WT~ 537 (1083)
+|++++|-.|+.+|..-. +-..|+..+. .-|...+..||+.+| +| .+..+-.||.
T Consensus 1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~ 78 (199)
T PF13325_consen 1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK 78 (199)
T ss_pred CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence 699999999999998764 4566665543 345556678887655 22 1235678999
Q ss_pred hHHHHHHHHHHhcCC--chhhhhhc-----cCCCCChHHHHHHHHhc
Q 001409 538 DEDQRLIVATMLFGP--RNWKKIAQ-----FVPGRTQVQCRERWVNS 577 (1083)
Q Consensus 538 EEDekLLeaV~kyG~--~nWskIAk-----~LPGRT~kQCReRW~n~ 577 (1083)
+|++.|......... ..+.+|-. +-++||+++...+|..+
T Consensus 79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lm 125 (199)
T PF13325_consen 79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLM 125 (199)
T ss_pred HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHH
Confidence 999999997765532 24666642 33689999999999864
No 43
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=86.82 E-value=0.63 Score=41.88 Aligned_cols=47 Identities=19% Similarity=0.372 Sum_probs=38.7
Q ss_pred CCCCChhHHHHHHHHHHhcCC----------------chhhhhhccC-----CCCChHHHHHHHHhcc
Q 001409 532 QGRWNPDEDQRLIVATMLFGP----------------RNWKKIAQFV-----PGRTQVQCRERWVNSL 578 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~----------------~nWskIAk~L-----PGRT~kQCReRW~n~L 578 (1083)
+..||.+|...|+.+|..|.. ..|..|+..| +.||..|++.+|.++.
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk 69 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK 69 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence 467999999999999988731 2499999765 2699999999998765
No 44
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=85.92 E-value=1.2 Score=40.14 Aligned_cols=47 Identities=26% Similarity=0.524 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhC-----------------CCHHHHhhhC-----CCCCHHHHHHHHHHhcc
Q 001409 584 RSEWTEQEDLRLEAAIKEHG-----------------YCWSKVASAL-----PSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~G-----------------~kWskIAk~L-----pGRTd~QCRnRWk~Llk 630 (1083)
...||.+|...|++++.+|. .-|..|+..| +.||..+++.+|..|..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 35799999999999998873 1499999876 25999999999999854
No 45
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=85.89 E-value=0.77 Score=48.47 Aligned_cols=51 Identities=25% Similarity=0.492 Sum_probs=40.3
Q ss_pred ccCCCCCHHHHHHHHHHHHHhC----C---CHHHHhhhCCCCCHHHHHHHHHHhccCcc
Q 001409 582 VKRSEWTEQEDLRLEAAIKEHG----Y---CWSKVASALPSRTDNQCWRRWKALHPEAV 633 (1083)
Q Consensus 582 ikkgpWT~EEDekLLelVke~G----~---kWskIAk~LpGRTd~QCRnRWk~Llkk~~ 633 (1083)
.+...||.|+|.+|-+.|-.|+ . -...++..| +||..+|.-||+..+++..
T Consensus 3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Y 60 (170)
T PRK13923 3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQY 60 (170)
T ss_pred chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHH
Confidence 3467899999999977776665 2 356667778 9999999999999987544
No 46
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=84.56 E-value=1.1 Score=47.33 Aligned_cols=48 Identities=19% Similarity=0.371 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCC------HHHHHHHhCCCCCHHHHHHHHHhhcC
Q 001409 425 NHNPWTVEEEKSLLLIIQEKGITD------WFDIAASLGTNRTPFQCLARYQRSLN 474 (1083)
Q Consensus 425 nkgkWTkEEDekLleLVek~G~~d------W~kIA~~LGtnRTp~QC~~Rwqr~Ln 474 (1083)
.+..||.|+|..|.+.|-+|+... ...++..| +||+.+|..||...+.
T Consensus 4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L--~rt~aac~fRwNs~vr 57 (170)
T PRK13923 4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL--KRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH--hhhHHHHHhHHHHHHH
Confidence 457899999999999998885333 45566777 5999999999965543
No 47
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=80.10 E-value=3 Score=48.68 Aligned_cols=50 Identities=18% Similarity=0.242 Sum_probs=44.7
Q ss_pred ccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhccC
Q 001409 582 VKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 582 ikkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Llkk 631 (1083)
....+||.+|-++...++...|..++.|+..||.|...|++-+|..=-+.
T Consensus 363 ~~~~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~ 412 (507)
T COG5118 363 KGALRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV 412 (507)
T ss_pred CCCCcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence 34568999999999999999999999999999999999999999865443
No 48
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=75.17 E-value=3.6 Score=41.11 Aligned_cols=50 Identities=30% Similarity=0.466 Sum_probs=40.6
Q ss_pred CccCCCCCHHHHHHHHHHHHHhCC----CHHHHhhh------------CCCCCHHHHHHHHHHhcc
Q 001409 581 SVKRSEWTEQEDLRLEAAIKEHGY----CWSKVASA------------LPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 581 sikkgpWT~EEDekLLelVke~G~----kWskIAk~------------LpGRTd~QCRnRWk~Llk 630 (1083)
..+...||.+||.-||-.+.+||. .|..|-.. +..||+..+..|-..|+.
T Consensus 46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~ 111 (118)
T PF09111_consen 46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIK 111 (118)
T ss_dssp TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHH
T ss_pred CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHH
Confidence 556788999999999999999997 89998764 348999999999998864
No 49
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=70.18 E-value=4.4 Score=47.36 Aligned_cols=44 Identities=20% Similarity=0.527 Sum_probs=41.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHh
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVN 576 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n 576 (1083)
.-+||.+|-+++..|+..+| .++..|+..+|.|..+|++.+|.+
T Consensus 365 ~~~Ws~~e~ekFYKALs~wG-tdF~LIs~lfP~R~RkqIKaKfi~ 408 (507)
T COG5118 365 ALRWSKKEIEKFYKALSIWG-TDFSLISSLFPNRERKQIKAKFIK 408 (507)
T ss_pred CCcccHHHHHHHHHHHHHhc-chHHHHHHhcCchhHHHHHHHHHH
Confidence 35899999999999999999 899999999999999999999975
No 50
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=69.76 E-value=8 Score=31.98 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 590 QEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 590 EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
+=|.+|+.++...|. .|..||..+ |=|...|.+|+..|
T Consensus 3 ~~D~~Il~~Lq~d~r~s~~~la~~l-glS~~~v~~Ri~rL 41 (42)
T PF13404_consen 3 ELDRKILRLLQEDGRRSYAELAEEL-GLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHHH-TTS-HHHHHHHH-TS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHHHHHHHH-CcCHHHHHHHHHHh
Confidence 448899999999987 999999999 99999999999876
No 51
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=69.49 E-value=9 Score=35.40 Aligned_cols=45 Identities=27% Similarity=0.508 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHh---CC----------CHHHHhhhC---C--CCCHHHHHHHHHHhcc
Q 001409 586 EWTEQEDLRLEAAIKEH---GY----------CWSKVASAL---P--SRTDNQCWRRWKALHP 630 (1083)
Q Consensus 586 pWT~EEDekLLelVke~---G~----------kWskIAk~L---p--GRTd~QCRnRWk~Llk 630 (1083)
.||++.+..|++++.+. |. .|..|+..| + ..|..||++||..|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 49999999999998654 21 499999876 2 3688999999999955
No 52
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=68.79 E-value=14 Score=44.38 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=46.0
Q ss_pred cCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhccCcch
Q 001409 583 KRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEAVP 634 (1083)
Q Consensus 583 kkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Llkk~~~ 634 (1083)
-...||.||-.++-+++..||.++.+|-+.||.|+-..+...|....+....
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~~ 237 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTREY 237 (534)
T ss_pred CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhhH
Confidence 3567999999999999999999999999999999999999999988665433
No 53
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=67.35 E-value=5.8 Score=45.37 Aligned_cols=48 Identities=29% Similarity=0.523 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHHh----------CCCHHHHhhhC----CCCCHHHHHHHHHHhccC
Q 001409 584 RSEWTEQEDLRLEAAIKEH----------GYCWSKVASAL----PSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~----------G~kWskIAk~L----pGRTd~QCRnRWk~Llkk 631 (1083)
...|+.+|-..||++..+. +..|..||..+ .-||+.||+++|..|.++
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~ 115 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKK 115 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 4679999999999997653 24699999854 359999999999999653
No 54
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=67.27 E-value=9.7 Score=43.62 Aligned_cols=48 Identities=31% Similarity=0.465 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHHh---------CCCCHHHHHHH---hCCCCCHHHHHHHHHhhc
Q 001409 426 HNPWTVEEEKSLLLIIQEK---------GITDWFDIAAS---LGTNRTPFQCLARYQRSL 473 (1083)
Q Consensus 426 kgkWTkEEDekLleLVek~---------G~~dW~kIA~~---LGtnRTp~QC~~Rwqr~L 473 (1083)
...|+.+|-..|+.+..+. ....|..||.. +|..||+.+|..+|.++.
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~ 113 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK 113 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 3679999999999887642 23569999984 588999999999987764
No 55
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=67.03 E-value=14 Score=30.56 Aligned_cols=38 Identities=24% Similarity=0.405 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhh
Q 001409 433 EEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRS 472 (1083)
Q Consensus 433 EDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~ 472 (1083)
=|.+|+.+.+..+...|.+||..+| =++..|..|++++
T Consensus 4 ~D~~Il~~Lq~d~r~s~~~la~~lg--lS~~~v~~Ri~rL 41 (42)
T PF13404_consen 4 LDRKILRLLQEDGRRSYAELAEELG--LSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHHHH-TTS-HHHHHHHHT--S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHC--cCHHHHHHHHHHh
Confidence 4788999999999899999999997 5899999998764
No 56
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=64.21 E-value=7.4 Score=48.83 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=40.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHh
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVN 576 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n 576 (1083)
...||+.|-..+-+|+..|. +++-.|+..++++|-+||-+-|+.
T Consensus 619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt 662 (907)
T KOG4167|consen 619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT 662 (907)
T ss_pred cccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence 45899999999999999999 899999999999999999998863
No 57
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=63.81 E-value=11 Score=37.87 Aligned_cols=53 Identities=23% Similarity=0.404 Sum_probs=39.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhC-----------CCCCHHHHHHHHHhhc
Q 001409 421 DPLINHNPWTVEEEKSLLLIIQEKGI---TDWFDIAASLG-----------TNRTPFQCLARYQRSL 473 (1083)
Q Consensus 421 dP~inkgkWTkEEDekLleLVek~G~---~dW~kIA~~LG-----------tnRTp~QC~~Rwqr~L 473 (1083)
-|..++..||.+||.-|+-.+.+||. ..|..|-..+- ..||+..+..|....+
T Consensus 44 ~~~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi 110 (118)
T PF09111_consen 44 PPNNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLI 110 (118)
T ss_dssp TSTSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHH
T ss_pred CCCCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHH
Confidence 34677789999999999999999998 78999987652 2577777777765543
No 58
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=62.93 E-value=5.3 Score=46.96 Aligned_cols=102 Identities=19% Similarity=0.319 Sum_probs=68.6
Q ss_pred CChhhhhhhcCCCCccccccccccCCCCccccCCCCChhHHHHHHHHHHhcCCchhhhhhccC--CCCChHHHHHHHHhc
Q 001409 500 SNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFV--PGRTQVQCRERWVNS 577 (1083)
Q Consensus 500 ~nW~kIA~~mpGRT~~QCr~RW~~~Lnp~i~rKG~WT~EEDekLLeaV~kyG~~nWskIAk~L--PGRT~kQCReRW~n~ 577 (1083)
.+|.-+.-..+.|......++|.+..++. +- | .+.+..+.| |.-| .+-|.++
T Consensus 74 ~~W~w~pFtn~aRkD~~~l~HWvr~~d~~--~d-----------------y---pfakfNk~vdipsYt----~eEYe~~ 127 (445)
T KOG2656|consen 74 RPWKWVPFTNSARKDDATLHHWVRVGDTP--KD-----------------Y---PFAKFNKHVDIPSYT----DEEYEAH 127 (445)
T ss_pred CCceeeccCCccccCCceEEeeeeccCCC--CC-----------------C---chhhhccccCccccc----hHHHHHh
Confidence 45666555555666667777787764433 10 1 111111222 2222 2346666
Q ss_pred cCCCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhh-----CCC-CCHHHHHHHHHHhccC
Q 001409 578 LDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASA-----LPS-RTDNQCWRRWKALHPE 631 (1083)
Q Consensus 578 LdPsikkgpWT~EEDekLLelVke~G~kWskIAk~-----LpG-RTd~QCRnRWk~Llkk 631 (1083)
|+. ..||.+|-..|+++.+.|..+|-.|+.. ++. ||-...+.||+.+.+.
T Consensus 128 l~d----n~WskeETD~LF~lck~fDLRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~ 183 (445)
T KOG2656|consen 128 LND----NSWSKEETDYLFDLCKRFDLRFFVIADRYDNQQYKKSRTVEDLKERYYSVCRK 183 (445)
T ss_pred hcc----ccccHHHHHHHHHHHHhcCeeEEEEeeccchhhccccccHHHHHHHHHHHHHH
Confidence 643 7899999999999999999999999976 565 9999999999988653
No 59
>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]
Probab=61.87 E-value=14 Score=46.53 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=40.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 585 SEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 585 gpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
..||..|-...-+++..|..++-.|++.+++.|..||-..|+.-
T Consensus 620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW 663 (907)
T KOG4167|consen 620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW 663 (907)
T ss_pred ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence 46999999999999999999999999999999999998886654
No 60
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=57.32 E-value=17 Score=36.98 Aligned_cols=42 Identities=12% Similarity=0.148 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhccCc
Q 001409 590 QEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 590 EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~Llkk~ 632 (1083)
+-|.+||.+....|. .|+.||+.+ |-|...|++|++.|....
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~l-glS~~tV~~Ri~rL~~~G 51 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQF-GVSPGTIHVRVEKMKQAG 51 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 468999999999986 999999999 999999999999996543
No 61
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=53.72 E-value=17 Score=37.48 Aligned_cols=43 Identities=12% Similarity=0.281 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhccCc
Q 001409 589 EQEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 589 ~EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~Llkk~ 632 (1083)
.+-|.+||.+..+.|. .|+.||+.+ |-|...|++|++.|....
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~l-glS~~tv~~Ri~rL~~~G 56 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRV-GLSPTPCLERVRRLERQG 56 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHH-CcCHHHHHHHHHHHHHCC
Confidence 4458999999999987 999999999 999999999999997654
No 62
>smart00595 MADF subfamily of SANT domain.
Probab=53.37 E-value=11 Score=34.38 Aligned_cols=26 Identities=31% Similarity=0.795 Sum_probs=22.6
Q ss_pred CHHHHhhhCCCCCHHHHHHHHHHhccC
Q 001409 605 CWSKVASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 605 kWskIAk~LpGRTd~QCRnRWk~Llkk 631 (1083)
-|..||..| |-|..+|+.+|+.|...
T Consensus 29 aW~~Ia~~l-~~~~~~~~~kw~~LR~~ 54 (89)
T smart00595 29 AWEEIAEEL-GLSVEECKKRWKNLRDR 54 (89)
T ss_pred HHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 499999999 55999999999999643
No 63
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=48.82 E-value=51 Score=30.44 Aligned_cols=45 Identities=31% Similarity=0.488 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHHHHHHh---CCC---------CHHHHHHHh----CCCCCHHHHHHHHHhh
Q 001409 428 PWTVEEEKSLLLIIQEK---GIT---------DWFDIAASL----GTNRTPFQCLARYQRS 472 (1083)
Q Consensus 428 kWTkEEDekLleLVek~---G~~---------dW~kIA~~L----GtnRTp~QC~~Rwqr~ 472 (1083)
.||+++++.|+.+..+. |.. .|..|+..| |...+..||..||...
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~l 61 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTL 61 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHH
Confidence 49999999999987543 212 288888876 5566788888887764
No 64
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=48.23 E-value=24 Score=29.45 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 589 EQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 589 ~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
++++..++.++...|..|..||..+ |.|...++.+....
T Consensus 12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra 50 (54)
T PF08281_consen 12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRA 50 (54)
T ss_dssp -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHH
Confidence 4567788889999999999999999 99999999987754
No 65
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=47.81 E-value=33 Score=35.01 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcCC
Q 001409 432 EEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILR 479 (1083)
Q Consensus 432 EEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lkK 479 (1083)
+-|.+|+.+.++.|...|.+||..+| -++..|..|++++...+..+
T Consensus 9 ~~D~~Il~~Lq~d~R~s~~eiA~~lg--lS~~tV~~Ri~rL~~~GvI~ 54 (153)
T PRK11179 9 NLDRGILEALMENARTPYAELAKQFG--VSPGTIHVRVEKMKQAGIIT 54 (153)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCee
Confidence 45889999999999999999999997 69999999999987655443
No 66
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=42.97 E-value=23 Score=33.27 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=16.9
Q ss_pred cCcCCCCCCHHHHHHH--------HHHHHHhCCCChhhhhh
Q 001409 475 ACILRREWTKEEDEQL--------RIAVEAYGESNWQSVAS 507 (1083)
Q Consensus 475 p~lkKgkWT~EEDekL--------leLVek~G~~nW~kIA~ 507 (1083)
|....|-||+|+|..| .+++++|| |..|+.
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 4567899999999999 45556676 455543
No 67
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=42.52 E-value=34 Score=35.30 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCcC
Q 001409 431 VEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACIL 478 (1083)
Q Consensus 431 kEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~lk 478 (1083)
.+-|.+|+.+.++.|...|.+||..+| -++..|..|++++...+..
T Consensus 13 D~~D~~IL~~Lq~d~R~s~~eiA~~lg--lS~~tv~~Ri~rL~~~GvI 58 (164)
T PRK11169 13 DRIDRNILNELQKDGRISNVELSKRVG--LSPTPCLERVRRLERQGFI 58 (164)
T ss_pred HHHHHHHHHHhccCCCCCHHHHHHHHC--cCHHHHHHHHHHHHHCCCe
Confidence 345888999999999999999999997 5899999999998765543
No 68
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=42.30 E-value=1.2e+02 Score=29.88 Aligned_cols=46 Identities=15% Similarity=0.152 Sum_probs=33.3
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcC
Q 001409 425 NHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLN 474 (1083)
Q Consensus 425 nkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Ln 474 (1083)
.+..||.|+-..++..+...| ..=..||..+|. ++ +-+.+|.+.+.
T Consensus 9 ~rr~ys~EfK~~aV~~~~~~g-~sv~evA~e~gI--s~-~tl~~W~r~y~ 54 (121)
T PRK09413 9 KRRRRTTQEKIAIVQQSFEPG-MTVSLVARQHGV--AA-SQLFLWRKQYQ 54 (121)
T ss_pred CCCCCCHHHHHHHHHHHHcCC-CCHHHHHHHHCc--CH-HHHHHHHHHHh
Confidence 357799999777777766666 577899999986 33 34556777653
No 69
>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []. The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.
Probab=38.52 E-value=39 Score=31.80 Aligned_cols=30 Identities=27% Similarity=0.331 Sum_probs=17.2
Q ss_pred CCCCCCCCCHHHHHHH--------HHHHHHhCCCCHHHHHH
Q 001409 422 PLINHNPWTVEEEKSL--------LLIIQEKGITDWFDIAA 454 (1083)
Q Consensus 422 P~inkgkWTkEEDekL--------leLVek~G~~dW~kIA~ 454 (1083)
|....|-||+++|+.| ..|+++|| |..|+.
T Consensus 43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~ 80 (87)
T PF11626_consen 43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER 80 (87)
T ss_dssp -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence 6677899999999999 34556676 555554
No 70
>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]
Probab=37.93 E-value=32 Score=41.53 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=41.3
Q ss_pred cCCCCChhHHHHHHHHHHhcCCchhhhhhccCCCCChHHHHHHHHhc
Q 001409 531 RQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNS 577 (1083)
Q Consensus 531 rKG~WT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~ 577 (1083)
....||.||-.++-.++..|| +++.+|-..||.|+-..++.-|+..
T Consensus 186 ~~d~WT~Ed~vlFe~aF~~~G-K~F~kIrq~LP~rsLaSlvqyYy~~ 231 (534)
T KOG1194|consen 186 FPDEWTAEDIVLFEQAFQFFG-KDFHKIRQALPHRSLASLVQYYYSW 231 (534)
T ss_pred CcccchHHHHHHHHHHHHHhc-ccHHHHHHHccCccHHHHHHHHHHH
Confidence 346799999999999999999 8999999999999999999888753
No 71
>smart00351 PAX Paired Box domain.
Probab=33.86 E-value=2.7e+02 Score=27.82 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=55.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCC-CHHHHHHHHHhh--cCcCc----CCCCCCHHHHHHHHHHHHH
Q 001409 424 INHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNR-TPFQCLARYQRS--LNACI----LRREWTKEEDEQLRIAVEA 496 (1083)
Q Consensus 424 inkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnR-Tp~QC~~Rwqr~--Lnp~l----kKgkWT~EEDekLleLVek 496 (1083)
.+..+++.++-.+++.++. .| .....||..||..| |.+.+..||... +.+.. ....=+.+....|.+++..
T Consensus 13 ~~~~~~s~~~R~riv~~~~-~G-~s~~~iA~~~gvs~~tV~kwi~r~~~~G~~~pk~~gg~rp~~~~~~~~~~I~~~~~~ 90 (125)
T smart00351 13 VNGRPLPDEERQRIVELAQ-NG-VRPCDISRQLCVSHGCVSKILGRYYETGSIRPGAIGGSKPKVATPKVVKKIADYKQE 90 (125)
T ss_pred cCCCCCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCcCCCCCCCCccCHHHHHHHHHHHHH
Confidence 4456799999999998886 45 57899999998765 355666677653 22321 2233566677778888888
Q ss_pred hCCCChhhhhhhc
Q 001409 497 YGESNWQSVASTL 509 (1083)
Q Consensus 497 ~G~~nW~kIA~~m 509 (1083)
++...=.+|+..+
T Consensus 91 ~p~~t~~el~~~L 103 (125)
T smart00351 91 NPGIFAWEIRDRL 103 (125)
T ss_pred CCCCCHHHHHHHH
Confidence 7753334555444
No 72
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=32.75 E-value=44 Score=41.59 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=41.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCHHHH----------hhhCCCCCHHHHHHHHHHhccCcc
Q 001409 584 RSEWTEQEDLRLEAAIKEHGYCWSKV----------ASALPSRTDNQCWRRWKALHPEAV 633 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~G~kWskI----------Ak~LpGRTd~QCRnRWk~Llkk~~ 633 (1083)
+..||..|..-...+++++|.++..| -..+.-.|..|++.+|++++.+..
T Consensus 88 ktaWt~~E~~~Ffdal~~~GKdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~~~m~ 147 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGKDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLVRRMN 147 (782)
T ss_pred ccccchhhHHHHHHHHHHhcccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHHHHHH
Confidence 67899999999999999999999998 333455788999999998865443
No 73
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=32.57 E-value=54 Score=40.87 Aligned_cols=46 Identities=20% Similarity=0.412 Sum_probs=38.5
Q ss_pred CCCCChhHHHHHHHHHHhcCCchhhhh----------hccCCCCChHHHHHHHHhcc
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKI----------AQFVPGRTQVQCRERWVNSL 578 (1083)
Q Consensus 532 KG~WT~EEDekLLeaV~kyG~~nWskI----------Ak~LPGRT~kQCReRW~n~L 578 (1083)
+..||-.|..-+..++..+| +++..| ...+.-+|-.|.|.+|+..+
T Consensus 88 ktaWt~~E~~~Ffdal~~~G-KdFe~VinaklKRrna~s~~~~Ktkdqvr~~yY~~~ 143 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVG-KDFEKVINAKLKRRNATSRVQSKTKDQVRHYYYRLV 143 (782)
T ss_pred ccccchhhHHHHHHHHHHhc-ccHHHHHHHHHHhcccccchhhhhhHHHHHHHHHHH
Confidence 56799999999999999999 888888 33445678889999998765
No 74
>PF07750 GcrA: GcrA cell cycle regulator; InterPro: IPR011681 GcrA, together with CtrA (see IPR001789 from INTERPRO and IPR001867 from INTERPRO), form a master cell cycle regulator. These bacterial regulators are involved in controlling the progression and asymmetric polar morphogenesis []. During this process, there are temporal and spatial variations in the concentrations of GcrA and CtrA. The variation in concentration produces time and space dependent transcriptional regulation of modular functions that implement cell-cycle processes []. More specifically, GcrA acts as an activator of components of the replisome and the segregation machinery [].
Probab=32.17 E-value=53 Score=34.59 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=36.2
Q ss_pred CCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHh
Q 001409 586 EWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKAL 628 (1083)
Q Consensus 586 pWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~L 628 (1083)
.||.|..+.|.++. .-|..=+.||..|.|.|.|.+.-+-+.|
T Consensus 2 ~Wtde~~~~L~~lw-~~G~SasqIA~~lg~vsRnAViGk~hRl 43 (162)
T PF07750_consen 2 SWTDERVERLRKLW-AEGLSASQIARQLGGVSRNAVIGKAHRL 43 (162)
T ss_pred CCCHHHHHHHHHHH-HcCCCHHHHHHHhCCcchhhhhhhhhcc
Confidence 59999999888887 5689999999999889999998776655
No 75
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=29.79 E-value=52 Score=39.19 Aligned_cols=45 Identities=22% Similarity=0.280 Sum_probs=39.9
Q ss_pred CCCChhHHHHHHHHHHhcCCchhhhhhcc-----CCC-CChHHHHHHHHhcc
Q 001409 533 GRWNPDEDQRLIVATMLFGPRNWKKIAQF-----VPG-RTQVQCRERWVNSL 578 (1083)
Q Consensus 533 G~WT~EEDekLLeaV~kyG~~nWskIAk~-----LPG-RT~kQCReRW~n~L 578 (1083)
..||.+|-.-|..+...|. ..|..|+.. ++. ||-...++||+.+.
T Consensus 131 n~WskeETD~LF~lck~fD-LRf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~ 181 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFD-LRFFVIADRYDNQQYKKSRTVEDLKERYYSVC 181 (445)
T ss_pred ccccHHHHHHHHHHHHhcC-eeEEEEeeccchhhccccccHHHHHHHHHHHH
Confidence 4699999999999999999 899999976 554 99999999998653
No 76
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar. The majority are described as transcription factor transactivators. The family also includes the fifth essential DNA polymerase (Pol5p) of Schizosaccharomyces pombe (Fission yeast) and Saccharomyces cerevisiae (Baker's yeast) (2.7.7.7 from EC). Pol5p is localized exclusively to the nucleolus and binds near or at the enhancer region of rRNA-encoding DNA repeating units.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006351 transcription, DNA-dependent
Probab=25.35 E-value=1e+02 Score=39.65 Aligned_cols=87 Identities=24% Similarity=0.355 Sum_probs=0.0
Q ss_pred CCcCCCCCCCchhhHHHHHHHHHHhhhcccCcccccccccCCCCCCCCCCCcccCCCCCCCCC----cHHHHHHHHHhhc
Q 001409 9 DGEEFSGSENDDAFDEDMEALRRACMIIRADADDLEKTDYHHLPDAAAPSATAADEWSSDGEG----DLELVRSIQNRLA 84 (1083)
Q Consensus 9 ~~~~~~~~~~~~~~~~d~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----d~~~~r~i~~~~~ 84 (1083)
|++++++.+++|+..+|.+ +.++-...++. ..+.-...-.+++|++++| |=++-..+.+-|.
T Consensus 648 ede~~~~~~~~d~ded~~~-----------~~~d~~~~~e~---d~e~~~~~e~~dd~e~~~~~~~~d~~~~~~l~~aL~ 713 (784)
T PF04931_consen 648 EDEDEDDEEEEDDDEDDEE-----------DGEDDEDESED---DDEDEEEDEEEDDDEDDEDLAEVDEEFRSALAKALG 713 (784)
T ss_pred ccccccccccCCCcccccc-----------ccccccccccc---ccccccccccccccccccchhhhHHHHHHHHHHHhc
Q ss_pred cCCCCCCCCCcccccCCCCCCCCCcccchh---------HHHHHHHHh
Q 001409 85 LSNDLCQPLSLEALCTLPPVVSDDDEEDDF---------ETLHVIQKR 123 (1083)
Q Consensus 85 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---------etl~ai~~r 123 (1083)
.++.. +++|++|++|+ +.|-+|+|+
T Consensus 714 ~~~~~--------------~~~~~~~~~~mdDe~m~~lD~~La~~Fk~ 747 (784)
T PF04931_consen 714 DADAL--------------DDDDSSDDEDMDDEQMMALDEQLAAIFKE 747 (784)
T ss_pred ccccc--------------cccccccccccCHHHHHHHHHHHHHHHHH
No 77
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=25.04 E-value=1.3e+02 Score=28.35 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCC-CHHHHhhhCCCCCHHHHHHHHHHhccC
Q 001409 590 QEDLRLEAAIKEHGY-CWSKVASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 590 EEDekLLelVke~G~-kWskIAk~LpGRTd~QCRnRWk~Llkk 631 (1083)
+.|.+|+.++...|. .|+.||+.+ |-+...|+++...|...
T Consensus 3 ~~D~~il~~L~~~~~~~~~~la~~l-~~s~~tv~~~l~~L~~~ 44 (108)
T smart00344 3 EIDRKILEELQKDARISLAELAKKV-GLSPSTVHNRVKRLEEE 44 (108)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHH-CcCHHHHHHHHHHHHHC
Confidence 468889999988885 999999999 99999999999999654
No 78
>COG4954 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.88 E-value=37 Score=33.93 Aligned_cols=28 Identities=36% Similarity=0.553 Sum_probs=22.8
Q ss_pred CCCCcccccCCCCCCCCCcccchhHHHHHHHHhhhcc
Q 001409 91 QPLSLEALCTLPPVVSDDDEEDDFETLHVIQKRFSAY 127 (1083)
Q Consensus 91 ~p~~~~~~~~~~~~~~~~~~~~~~etl~ai~~rf~~y 127 (1083)
-||++.|++.++. |- |||+||.||--.-
T Consensus 51 nplsiqpvivls~-----dq----etl~aihrraler 78 (135)
T COG4954 51 NPLSIQPVIVLSG-----DQ----ETLKAIHRRALER 78 (135)
T ss_pred CccccceEEEEeC-----CH----HHHHHHHHHHHhc
Confidence 7999999999877 33 9999999995443
No 79
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=23.89 E-value=1.3e+02 Score=33.70 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=38.2
Q ss_pred chHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 001409 210 SAQVFIDAIKKNRSYQKFIRSKLTQIESRIEENNKLKERVK 250 (1083)
Q Consensus 210 ~aq~~~dAL~~Nr~YQ~vL~~kL~eIE~~L~qNr~~qeevk 250 (1083)
++..|..|+..+..++.-.......||.+-.+|.+++.++.
T Consensus 96 ~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ 136 (232)
T KOG2483|consen 96 TLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLE 136 (232)
T ss_pred hhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888899999999999999999999999999999999875
No 80
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=23.15 E-value=91 Score=27.73 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=17.7
Q ss_pred HHHhHHHHHHHHHHHHHHHH
Q 001409 218 IKKNRSYQKFIRSKLTQIES 237 (1083)
Q Consensus 218 L~~Nr~YQ~vL~~kL~eIE~ 237 (1083)
=++|++|+.+|..++.++|.
T Consensus 29 ~~ln~EY~kiLk~r~~~lEe 48 (56)
T PF08112_consen 29 SNLNMEYEKILKQRRKELEE 48 (56)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999886
No 81
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=23.04 E-value=1.4e+02 Score=24.83 Aligned_cols=39 Identities=23% Similarity=0.367 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhc
Q 001409 432 EEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSL 473 (1083)
Q Consensus 432 EEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~L 473 (1083)
++...++.+..-.| ..|.+||..+| .+...+..++.+.+
T Consensus 13 ~~~r~i~~l~~~~g-~s~~eIa~~l~--~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 13 ERQREIFLLRYFQG-MSYAEIAEILG--ISESTVKRRLRRAR 51 (54)
T ss_dssp HHHHHHHHHHHTS----HHHHHHHCT--S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-cCHHHHHHHHC--cCHHHHHHHHHHHH
Confidence 34455666655556 79999999996 79999988877653
No 82
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=22.16 E-value=1.1e+02 Score=25.45 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhcc
Q 001409 590 QEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHP 630 (1083)
Q Consensus 590 EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Llk 630 (1083)
+++..++.+....|..+..||..+ |-|...++.+....+.
T Consensus 7 ~~er~vi~~~y~~~~t~~eIa~~l-g~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 7 PREREVIRLRYFEGLTLEEIAERL-GISRSTVRRILKRALK 46 (50)
T ss_dssp HHHHHHHHHHHTST-SHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH-CCcHHHHHHHHHHHHH
Confidence 456677777777778999999999 9999999888776543
No 83
>cd00131 PAX Paired Box domain
Probab=21.18 E-value=6.9e+02 Score=25.22 Aligned_cols=84 Identities=18% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCC-HHHHHHHHHhh--cCcCcC----CCCCCHHHHHHHHHHHHH
Q 001409 424 INHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRT-PFQCLARYQRS--LNACIL----RREWTKEEDEQLRIAVEA 496 (1083)
Q Consensus 424 inkgkWTkEEDekLleLVek~G~~dW~kIA~~LGtnRT-p~QC~~Rwqr~--Lnp~lk----KgkWT~EEDekLleLVek 496 (1083)
.+..+.|.+.-.+++.+++ .| .....||..||..++ .+.+..||... +.|... ...=|++.+..|..+|..
T Consensus 13 ~m~~~lS~d~R~rIv~~~~-~G-~s~~~iA~~~~Vs~~tV~r~i~r~~e~G~v~pk~~gg~rpr~~~~~~~~~i~~~v~~ 90 (128)
T cd00131 13 VNGRPLPDSIRQRIVELAQ-SG-IRPCDISRQLRVSHGCVSKILNRYYETGSIRPGAIGGSKPRVATPEVVKKIEIYKQE 90 (128)
T ss_pred cCCCcCCHHHHHHHHHHHH-cC-CCHHHHHHHHCcCHHHHHHHHHHHHHcCCcCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 3446899999899998875 55 689999999986553 55566666644 223221 122367777778888888
Q ss_pred hCCCChhhhhhhc
Q 001409 497 YGESNWQSVASTL 509 (1083)
Q Consensus 497 ~G~~nW~kIA~~m 509 (1083)
++...=.+|++.+
T Consensus 91 ~p~~Tl~El~~~L 103 (128)
T cd00131 91 NPGMFAWEIRDRL 103 (128)
T ss_pred CCCCCHHHHHHHH
Confidence 8765545555554
No 84
>KOG2009 consensus Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=20.55 E-value=1.2e+02 Score=37.99 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=46.4
Q ss_pred CCccCCCCCHHHHHHHHHHHHHhCCCHHHHhhhCCCCCHHHHHHHHHHhccCc
Q 001409 580 PSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 580 PsikkgpWT~EEDekLLelVke~G~kWskIAk~LpGRTd~QCRnRWk~Llkk~ 632 (1083)
+......|+.+|-++.-.++...|.+.+.|+..+|+|+..|+|.+|..=-++.
T Consensus 405 k~~~~~~w~~se~e~fyka~~~~gs~~slis~l~p~R~rk~iK~K~~~eE~r~ 457 (584)
T KOG2009|consen 405 KKLETDKWDASETELFYKALSERGSDFSLISNLFPLRDRKQIKAKFKKEEKRN 457 (584)
T ss_pred CccccCcccchhhHHhhhHHhhhcccccccccccccccHHHHHHHHhhhhhcc
Confidence 34567899999999999999999999999999999999999999998654443
No 85
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=20.20 E-value=1.7e+02 Score=29.06 Aligned_cols=44 Identities=20% Similarity=0.344 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHhCCCCCHHHHHHHHHhhcCcCc
Q 001409 432 EEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACI 477 (1083)
Q Consensus 432 EEDekLleLVek~G~~dW~kIA~~LGtnRTp~QC~~Rwqr~Lnp~l 477 (1083)
+-|.+++++.+..+...+.+||..+| -++..|..|-++....++
T Consensus 8 ~~D~~IL~~L~~d~r~~~~eia~~lg--lS~~~v~~Ri~~L~~~Gi 51 (154)
T COG1522 8 DIDRRILRLLQEDARISNAELAERVG--LSPSTVLRRIKRLEEEGV 51 (154)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHC--CCHHHHHHHHHHHHHCCc
Confidence 44788999999999899999999997 689999999888765443
No 86
>smart00595 MADF subfamily of SANT domain.
Probab=20.01 E-value=1e+02 Score=28.15 Aligned_cols=23 Identities=30% Similarity=0.632 Sum_probs=20.3
Q ss_pred CHHHHHHHhCCCCCHHHHHHHHHhh
Q 001409 448 DWFDIAASLGTNRTPFQCLARYQRS 472 (1083)
Q Consensus 448 dW~kIA~~LGtnRTp~QC~~Rwqr~ 472 (1083)
-|..||..||. +...|..+|..+
T Consensus 29 aW~~Ia~~l~~--~~~~~~~kw~~L 51 (89)
T smart00595 29 AWEEIAEELGL--SVEECKKRWKNL 51 (89)
T ss_pred HHHHHHHHHCc--CHHHHHHHHHHH
Confidence 49999999975 999999999875
No 87
>PF11035 SnAPC_2_like: Small nuclear RNA activating complex subunit 2-like; InterPro: IPR021281 This family of proteins is SnAPC subunit 2-like. SnAPC allows the transcription of human small nuclear RNA genes to occur by recognition of the proximal sequence element [].
Probab=20.01 E-value=2.2e+02 Score=33.49 Aligned_cols=49 Identities=18% Similarity=0.332 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHh-C---CCHHHHhhhCCCCCHHHHHHHHHHhccCc
Q 001409 584 RSEWTEQEDLRLEAAIKEH-G---YCWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 584 kgpWT~EEDekLLelVke~-G---~kWskIAk~LpGRTd~QCRnRWk~Llkk~ 632 (1083)
-..||.-|...|+.+.... | .+-..|++.++||+..+|++--..|..++
T Consensus 21 p~~Ws~rEkr~Llr~Lqar~g~~epd~ael~~~l~~Rs~aEI~~fl~~LK~rv 73 (344)
T PF11035_consen 21 PAAWSAREKRQLLRLLQARRGQPEPDAAELAKELPGRSEAEIRDFLQQLKGRV 73 (344)
T ss_pred cccCcHHHHHHHHHHHHHhcCCCCcCHHHHHhhccCcCHHHHHHHHHHHHHHH
Confidence 4579999999999888754 4 37789999999999999998888776543
Done!