Query 001409
Match_columns 1083
No_of_seqs 346 out of 2213
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 17:19:06 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001409.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_708-712//hhsearch_pdb/001409hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1h89_C C-MYB, MYB proto-oncoge 1.0 1 1 294.6 12.0 156 476-632 3-158 (159)
2 1h89_C C-MYB, MYB proto-oncoge 1.0 1 1 270.2 9.8 155 424-581 4-158 (159)
3 1h8a_C AMV V-MYB, MYB transfor 1.0 1 1 245.3 12.9 127 505-632 1-127 (128)
4 1h8a_C AMV V-MYB, MYB transfor 1.0 1 1 224.9 9.5 126 452-580 1-126 (128)
5 3zqc_A MYB3; transcription-DNA 1.0 1 1 200.1 12.3 100 532-631 2-101 (131)
6 2k9n_A MYB24; R2R3 domain, DNA 1.0 1 1 198.9 10.3 100 532-631 1-100 (107)
7 3osg_A MYB21; transcription-DN 1.0 1 1 198.8 11.6 101 530-631 9-109 (126)
8 3zqc_A MYB3; transcription-DNA 1.0 1 1 198.4 8.2 130 478-613 1-130 (131)
9 1gv2_A C-MYB, MYB proto-oncoge 1.0 1 1 197.7 12.8 103 530-632 2-104 (105)
10 1gv2_A C-MYB, MYB proto-oncoge 1.0 1 1 185.5 8.9 104 476-581 1-104 (105)
No 1
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=1.00 E-value=1 Score=294.62 Aligned_cols=156 Identities=41% Similarity=0.808 Sum_probs=150.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 76799999989999999999938987365532158777222233443577775455899993677799988771498412
Q 001409 476 CILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNW 555 (1083)
Q Consensus 476 ~lkKgkWTkEEDekLlkLVek~G~~nW~kIAk~LpGRS~~QCr~RW~k~L~p~i~KKGkWT~EEDekLLeaV~kyG~~nW 555 (1083)
.+.+++||+|||+.|+++|..||..+|..||..|++|+..||+.||.++|+|. ..+|+||++||.+|+.+|..||..+|
T Consensus 3 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~-~~~~~Wt~eEd~~L~~~v~~~g~~~W 81 (159)
T 1h89_C 3 HLGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE-LIKGPWTKEEDQRVIKLVQKYGPKRW 81 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTT-CCCSCCCHHHHHHHHHHHHHHCSCCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHCCCCH
T ss_conf 98899989999999999999869788999998849998799999998823998-67899995999999999999696648
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 22100189999689999998405977669999998999999999994999889960199999999999998851482
Q 001409 556 KKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 556 skIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskIAk~LpGRTdnQCKnRWk~Llkk~ 632 (1083)
..||..|||||+.||+.||.++|+|.+++++||.+||..|++++.+||.+|+.||+.|||||+++|++||+.++++.
T Consensus 82 ~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 82 SVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99998827998999999999870842113578868899999999997979999997779999999999999998611
No 2
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=1.00 E-value=1 Score=270.24 Aligned_cols=155 Identities=35% Similarity=0.759 Sum_probs=148.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
Q ss_conf 99999998799999999999599998999988299999999999988410857679999998999999999993898736
Q 001409 424 INHNPWTVEEEKSLLLIIQEKGITDWFDIAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQ 503 (1083)
Q Consensus 424 inKg~WTkEEDekLleLVek~G~~dW~kIA~eLGtnRTp~QC~~Ryqr~Lnp~lkKgkWTkEEDekLlkLVek~G~~nW~ 503 (1083)
+++++||+|||+.|+.+|..||..+|..||..|+ +||+.||+.||..+++|.+.+++||+|||+.|+.+|..||..+|.
T Consensus 4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~-~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~ 82 (159)
T 1h89_C 4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLP-NRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWS 82 (159)
T ss_dssp ----------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCC-CCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHH
T ss_conf 8899989999999999999869788999998849-998799999998823998678999959999999999996966489
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 553215877722223344357777545589999367779998877149841222100189999689999998405977
Q 001409 504 SVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPS 581 (1083)
Q Consensus 504 kIAk~LpGRS~~QCr~RW~k~L~p~i~KKGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~Ps 581 (1083)
.||..|+|||..||+.||.++|+|. .++++||++||.+|+.+|..|| ..|..||..|||||+.||+.||+.++...
T Consensus 83 ~Ia~~l~~Rt~~qcr~Rw~~~l~p~-~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~~r~~ 158 (159)
T 1h89_C 83 VIAKHLKGRIGKQCRERWHNHLNPE-VKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158 (159)
T ss_dssp HHHHTSTTCCHHHHHHHHHHTTCTT-SCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred HHHHHCCCCCHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 9998827998999999999870842-1135788688999999999979-79999997779999999999999998611
No 3
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=1.00 E-value=1 Score=245.33 Aligned_cols=127 Identities=41% Similarity=0.829 Sum_probs=122.8
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCC
Q ss_conf 53215877722223344357777545589999367779998877149841222100189999689999998405977669
Q 001409 505 VASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKR 584 (1083)
Q Consensus 505 IAk~LpGRS~~QCr~RW~k~L~p~i~KKGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~Psikk 584 (1083)
||..|+||+..||+.||.++|+|. ..+|+||++||.+|+.+|..||..+|..||..|||||+.||++||.++|+|.+++
T Consensus 1 Ia~~~~~Rt~~qC~~Rw~~~l~p~-~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~ 79 (128)
T 1h8a_C 1 MEAVIKNRTDVQCQHRWQKVLNPE-LNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKK 79 (128)
T ss_dssp ---------------------CTT-CCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCCCCC
T ss_conf 925038989999999999863989-7799979999999999999978787999878735983899999999764241024
Q ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 999998999999999994999889960199999999999998851482
Q 001409 585 SEWTEQEDLRLEAAIKEHGYCWSKVASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 585 gpWT~EEDekLLelv~e~G~kWskIAk~LpGRTdnQCKnRWk~Llkk~ 632 (1083)
++||.|||..|+.++.+||.+|+.||..|||||+++|++||+.++++.
T Consensus 80 ~~WT~eEd~~L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 80 TSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp SCCCHHHHHHHHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred CCCCHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 468889999999999997948999997779999999999999997442
No 4
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=1.00 E-value=1 Score=224.90 Aligned_cols=126 Identities=36% Similarity=0.772 Sum_probs=99.6
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99882999999999999884108576799999989999999999938987365532158777222233443577775455
Q 001409 452 IAASLGTNRTPFQCLARYQRSLNACILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRER 531 (1083)
Q Consensus 452 IA~eLGtnRTp~QC~~Ryqr~Lnp~lkKgkWTkEEDekLlkLVek~G~~nW~kIAk~LpGRS~~QCr~RW~k~L~p~i~K 531 (1083)
||..| ++||+.||+.||..+++|.+.+++||+|||+.|+.+|..||..+|..||..|+||+..||+.||.++|+|. .+
T Consensus 1 Ia~~~-~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~-~~ 78 (128)
T 1h8a_C 1 MEAVI-KNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPE-VK 78 (128)
T ss_dssp ----------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSS-SC
T ss_pred CCCCC-CCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHCCCC-CC
T ss_conf 92503-89899999999998639897799979999999999999978787999878735983899999999764241-02
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCC
Q ss_conf 8999936777999887714984122210018999968999999840597
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDP 580 (1083)
Q Consensus 532 KGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~P 580 (1083)
+|+||++||.+|+.+|..|| .+|..||..|||||+.||+.||+.++..
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~~~~ 126 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNSTMRR 126 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred CCCCCHHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHHHHC
T ss_conf 44688899999999999979-4899999777999999999999999744
No 5
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=1.00 E-value=1 Score=200.14 Aligned_cols=100 Identities=37% Similarity=0.713 Sum_probs=96.4
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999367779998877149841222100189999689999998405977669999998999999999994999889960
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVAS 611 (1083)
Q Consensus 532 KGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskIAk 611 (1083)
+|+||++||.+|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||.+||.+|+.++.+||.+|+.||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia~ 81 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIAK 81 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 99989999999999999848689899989877999999999986304864468888889999999999997948999997
Q ss_pred HCCCCCHHHHHHHHHHHCCC
Q ss_conf 19999999999999885148
Q 001409 612 ALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 612 ~LpGRTdnQCKnRWk~Llkk 631 (1083)
.|||||++||++||+.++..
T Consensus 82 ~l~gRt~~~~k~rw~~~l~~ 101 (131)
T 3zqc_A 82 LIPGRTDNAIKNRWNSSISK 101 (131)
T ss_dssp TSTTCCHHHHHHHHHHTTGG
T ss_pred HCCCCCHHHHHHHHHHHHHH
T ss_conf 76999999999999999778
No 6
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=1.00 E-value=1 Score=198.87 Aligned_cols=100 Identities=31% Similarity=0.695 Sum_probs=96.9
Q ss_pred CCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
Q ss_conf 89999367779998877149841222100189999689999998405977669999998999999999994999889960
Q 001409 532 QGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVAS 611 (1083)
Q Consensus 532 KGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskIAk 611 (1083)
+|+||++||.+|+.+|..||..+|..||..|||||+.||++||.++|+|.+++++||.+||..|+.++.+||.+|+.||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~ 80 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK 80 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHH
T ss_conf 97989999999999999878997999956648999999999999997145213565899999999999996958999997
Q ss_pred HCCCCCHHHHHHHHHHHCCC
Q ss_conf 19999999999999885148
Q 001409 612 ALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 612 ~LpGRTdnQCKnRWk~Llkk 631 (1083)
.|||||++||++||..++++
T Consensus 81 ~l~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 81 FLKNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HHSSSCHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHH
T ss_conf 77899999999999999814
No 7
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=1.00 E-value=1 Score=198.78 Aligned_cols=101 Identities=37% Similarity=0.708 Sum_probs=97.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 55899993677799988771498412221001899996899999984059776699999989999999999949998899
Q 001409 530 ERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKV 609 (1083)
Q Consensus 530 ~KKGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskI 609 (1083)
.++|+||++||.+|+.+|..|| .+|..||..|||||..||++||.++|+|.+++++||.+||.+|+.++.+||.+|+.|
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G-~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W~~I 87 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQWAII 87 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHT-TCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 8899989999999999999959-799999988489988899988723000101125689899999999999989399999
Q ss_pred HHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 6019999999999999885148
Q 001409 610 ASALPSRTDNQCWRRWKALHPE 631 (1083)
Q Consensus 610 Ak~LpGRTdnQCKnRWk~Llkk 631 (1083)
|..|||||+++|++||..|+++
T Consensus 88 a~~l~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 88 AKFFPGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp HTTSTTCCHHHHHHHHHHHHHH
T ss_pred HHHCCCCCHHHHHHHHHHHHHH
T ss_conf 9886999999999999999985
No 8
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=1.00 E-value=1 Score=198.40 Aligned_cols=130 Identities=26% Similarity=0.547 Sum_probs=113.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHH
Q ss_conf 79999998999999999993898736553215877722223344357777545589999367779998877149841222
Q 001409 478 LRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNWKK 557 (1083)
Q Consensus 478 kKgkWTkEEDekLlkLVek~G~~nW~kIAk~LpGRS~~QCr~RW~k~L~p~i~KKGkWT~EEDekLLeaV~kyG~~nWsk 557 (1083)
.+|+||+|||+.|+.+|..||..+|..||..|+||+..||+.||.++|+|. ..+|+||++||.+|+.+|..|| .+|..
T Consensus 1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~-~~~~~Wt~eEd~~L~~~~~~~G-~~W~~ 78 (131)
T 3zqc_A 1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPA-VVKHAWTPEEDETIFRNYLKLG-SKWSV 78 (131)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTT-CCCSCCCHHHHHHHHHHHHHSC-SCHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHC-CCHHH
T ss_conf 999989999999999999848689899989877999999999986304864-4688888899999999999979-48999
Q ss_pred HHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
Q ss_conf 10018999968999999840597766999999899999999999499988996019
Q 001409 558 IAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKVASAL 613 (1083)
Q Consensus 558 IAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskIAk~L 613 (1083)
||..|||||+.||+.||+++|.+.+..++|+.+- +.........|+.|++.+
T Consensus 79 Ia~~l~gRt~~~~k~rw~~~l~~~~~~~~~~~~~----~~p~~~kk~~~~~i~k~~ 130 (131)
T 3zqc_A 79 IAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEI----LLPDRSKKRKAADVPKKL 130 (131)
T ss_dssp HTTTSTTCCHHHHHHHHHHTTGGGCCCCTTSCCC----CCCCCC------------
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCC----CCCHHHHHHHHHHCCHHC
T ss_conf 9977699999999999999977886059876421----381444233355301510
No 9
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=1.00 E-value=1 Score=197.73 Aligned_cols=103 Identities=41% Similarity=0.783 Sum_probs=99.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
Q ss_conf 55899993677799988771498412221001899996899999984059776699999989999999999949998899
Q 001409 530 ERQGRWNPDEDQRLIVATMLFGPRNWKKIAQFVPGRTQVQCRERWVNSLDPSVKRSEWTEQEDLRLEAAIKEHGYCWSKV 609 (1083)
Q Consensus 530 ~KKGkWT~EEDekLLeaV~kyG~~nWskIAk~LPGRT~kQCReRW~n~L~PsikkgpWT~EEDekLLelv~e~G~kWskI 609 (1083)
+++|+||++||.+|+.+|..||..+|..||..|||||+.||+.||.++|+|.+++++||.+||..|+.++.+||.+|+.|
T Consensus 2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~I 81 (105)
T 1gv2_A 2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAEI 81 (105)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 99999999999999999999687769998045148998999999982248752156788799999999999919998999
Q ss_pred HHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 60199999999999998851482
Q 001409 610 ASALPSRTDNQCWRRWKALHPEA 632 (1083)
Q Consensus 610 Ak~LpGRTdnQCKnRWk~Llkk~ 632 (1083)
|..|||||++||++||+.++++.
T Consensus 82 a~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 82 AKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 97868999999999999998530
No 10
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=1.00 E-value=1 Score=185.46 Aligned_cols=104 Identities=34% Similarity=0.785 Sum_probs=93.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHH
Q ss_conf 76799999989999999999938987365532158777222233443577775455899993677799988771498412
Q 001409 476 CILRREWTKEEDEQLRIAVEAYGESNWQSVASTLKGRTGTQCSNRWNKTLHPSRERQGRWNPDEDQRLIVATMLFGPRNW 555 (1083)
Q Consensus 476 ~lkKgkWTkEEDekLlkLVek~G~~nW~kIAk~LpGRS~~QCr~RW~k~L~p~i~KKGkWT~EEDekLLeaV~kyG~~nW 555 (1083)
.+++++||+|||+.|+++|..||..+|..||..|+||+..||+.||.++|+|. .++|+||++||.+|+.+|..|| .+|
T Consensus 1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~-~~~~~Wt~eEd~~L~~~~~~~G-~~W 78 (105)
T 1gv2_A 1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE-VKKTSWTEEEDRIIYQAHKRLG-NRW 78 (105)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCC-CCCCCCCHHHHHHHHHHHHHHS-SCH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCCCC-CCCCCCCHHHHHHHHHHHHHHC-CCH
T ss_conf 99999999999999999999968776999804514899899999998224875-2156788799999999999919-998
Q ss_pred HHHHCCCCCCCHHHHHHHHHHCCCCC
Q ss_conf 22100189999689999998405977
Q 001409 556 KKIAQFVPGRTQVQCRERWVNSLDPS 581 (1083)
Q Consensus 556 skIAk~LPGRT~kQCReRW~n~L~Ps 581 (1083)
..||..|||||+.||+.||+.++...
T Consensus 79 ~~Ia~~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 79 AEIAKLLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp HHHHTTCTTCCHHHHHHHHHHHTC--
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHCC
T ss_conf 99997868999999999999998530
Done!