BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001410
(1082 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
++ + E+G P D +G+ LH AA G+ +K ++ G N +D G T LH+AA
Sbjct: 20 VKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAE 79
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G ++ V +LLS GA DP+ + RTP A+ NGHK I L
Sbjct: 80 NGHKEIVKLLLSKGA------DPNAKDSDGRTPLHYAAENGHKEIVKLL 122
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 58/116 (50%), Gaps = 6/116 (5%)
Query: 675 EKLYSWLLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWT 734
E + +++ + G P D +G+ LH AA G+ +K ++ G N +D G T
Sbjct: 46 ENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRT 105
Query: 735 ALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
LH+AA G ++ V +LLS GA DP+ RTP DLA +G++ I L
Sbjct: 106 PLHYAAENGHKEIVKLLLSKGA------DPNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 706 AASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPS 765
AA G +K + G N D G T LH+AA G ++ V +LLS GA DP+
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGA------DPN 64
Query: 766 PEFPLSRTPSDLASSNGHKGISGFL 790
+ RTP A+ NGHK I L
Sbjct: 65 AKDSDGRTPLHYAAENGHKEIVKLL 89
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/109 (34%), Positives = 57/109 (52%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
++ + E+G D +G+ LHLAA G+ +K ++ G N +D G T LH AA
Sbjct: 20 VKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAE 79
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G ++ V +LLS GA DP+ + +TP LA+ NGHK + L
Sbjct: 80 NGHKEVVKLLLSQGA------DPNAKDSDGKTPLHLAAENGHKEVVKLL 122
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 59/119 (49%), Gaps = 6/119 (5%)
Query: 672 IMKEKLYSWLLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLS 731
+ E + +++ + G P D +G+ LHLAA G+ +K ++ G N +D
Sbjct: 43 LAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD 102
Query: 732 GWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G T LH AA G ++ V +LLS GA DP+ RTP DLA +G++ + L
Sbjct: 103 GKTPLHLAAENGHKEVVKLLLSQGA------DPNTSDSDGRTPLDLAREHGNEEVVKLL 155
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 6/85 (7%)
Query: 706 AASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPS 765
AA G +K + G +N D G T LH AA G ++ V +LLS GA DP+
Sbjct: 11 AAENGNKDRVKDLLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQGA------DPN 64
Query: 766 PEFPLSRTPSDLASSNGHKGISGFL 790
+ +TP LA+ NGHK + L
Sbjct: 65 AKDSDGKTPLHLAAENGHKEVVKLL 89
>pdb|2CXK|A Chain A, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|B Chain B, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|C Chain C, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|D Chain D, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
pdb|2CXK|E Chain E, Crystal Structure Of The Tig Domain Of Human Calmodulin-
Binding Transcription Activator 1 (Camta1)
Length = 95
Score = 57.4 bits (137), Expect = 4e-08, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 52/89 (58%), Gaps = 6/89 (6%)
Query: 498 IIDFSPKWTYTDPEIEVVVTGMFLKSHQEVAKCKWSCMFAEVEVPAEVLADGVLCCRIPP 557
+ D+SP+W+Y + ++V++TG + QE A +SC+F ++ VPA ++ GVL C P
Sbjct: 9 VTDYSPEWSYPEGGVKVLITGPW----QE-ASNNYSCLFDQISVPASLIQPGVLRCYCPA 63
Query: 558 HAVGRVPFYITCSNRLACSEVREFDYIVG 586
H G V + +N++ + V F+Y G
Sbjct: 64 HDTGLVTLQVAFNNQIISNSV-VFEYKSG 91
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 56.2 bits (134), Expect = 1e-07, Method: Composition-based stats.
Identities = 34/88 (38%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD+G LHLAA +G+ ++ + G +N RD GWT LH AA G + V VLL G
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKYG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + + TP LA+ GH
Sbjct: 104 A------DVNAQDAYGLTPLHLAADRGH 125
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + G +N +D G T LH AA G + V VLL G
Sbjct: 77 DTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.4 bits (93), Expect = 0.005, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA+ G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL----AEXXXXXXXXXXKMNDSADDGA 812
D + TP LA+ NGH I L A+ ++ +AD G
Sbjct: 72 ------DVNARDTDGWTPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGH 125
Query: 813 LE 814
LE
Sbjct: 126 LE 127
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.5 bits (127), Expect = 6e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +TP DLA GH+ I+ L
Sbjct: 125 A------DVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 46.2 bits (108), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + + TP LA+ GH
Sbjct: 92 A------DVNAKDKDGYTPLHLAAREGH 113
Score = 38.9 bits (89), Expect = 0.016, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N +D G+T LH AA G + V VLL GA
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP LA+ GH
Sbjct: 60 ------DVNAKDKDGYTPLHLAAREGH 80
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 65 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 124
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +TP DLA NG++ I+ L
Sbjct: 125 A------DVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 32 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 91
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + + TP LA+ GH
Sbjct: 92 A------DVNAKDKDGYTPLHLAAREGH 113
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N +D G+T LH AA G + V VLL GA
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP LA+ GH
Sbjct: 60 ------DVNAKDKDGYTPLHLAAREGH 80
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 52.8 bits (125), Expect = 1e-06, Method: Composition-based stats.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 6/97 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G+ LHLAA G+ +K + AG +N +D +G T LH AA G + V +LL G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
A D + + RTP LA+ NGH + L E
Sbjct: 92 A------DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G+ LHLAA G+ +K + AG +N +D +G T LH AA G + V +LL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
D + + RTP LA+ NGH + L E
Sbjct: 60 ----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G+ LHLAA G+ +K + AG +N +D +G T LH AA G + V +LL G
Sbjct: 65 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124
Query: 756 A 756
A
Sbjct: 125 A 125
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
++ + E+G D +G+ LH AA G+ +K ++ G +N +D G T LH+AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAK 79
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G ++ V +L+S GA D + + RTP A+ GHK I L
Sbjct: 80 EGHKEIVKLLISKGA------DVNAKDSDGRTPLHYAAKEGHKEIVKLL 122
Score = 50.4 bits (119), Expect = 6e-06, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G+ LH AA G+ +K ++ G +N +D G T LH+AA G ++ V +L+S G
Sbjct: 67 DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKG 126
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + RTP DLA +G++ I L
Sbjct: 127 A------DVNTSDSDGRTPLDLAREHGNEEIVKLL 155
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 51.2 bits (121), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 48/94 (51%), Gaps = 6/94 (6%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G+ LHLAA G+ +K + AG +N +D +G T LH AA G + V +LL GA
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA-- 59
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
D + + RTP LA+ NGH + L E
Sbjct: 60 ----DVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G+ LHLAA G+ +K + AG +N +D +G T LH AA G + V +LL G
Sbjct: 32 DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91
Query: 756 A 756
A
Sbjct: 92 A 92
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 50.8 bits (120), Expect = 4e-06, Method: Composition-based stats.
Identities = 35/109 (32%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
++ + E+G D +G+ LH AA G+ +K ++ G +N +D G T LH AA
Sbjct: 20 VKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAE 79
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G ++ V +L+S GA D + + RTP A+ NGHK + L
Sbjct: 80 NGHKEVVKLLISKGA------DVNAKDSDGRTPLHHAAENGHKEVVKLL 122
Score = 38.5 bits (88), Expect = 0.023, Method: Composition-based stats.
Identities = 29/85 (34%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 706 AASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPS 765
AA G +K + G +N D G T LH AA G ++ V +L+S GA D +
Sbjct: 11 AAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGA------DVN 64
Query: 766 PEFPLSRTPSDLASSNGHKGISGFL 790
+ RTP A+ NGHK + L
Sbjct: 65 AKDSDGRTPLHHAAENGHKEVVKLL 89
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
L++++ + P + +DEG LH A G+ +K V GV++N D GWT LH AA
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 741 YCGREKTVAVLLSLGAAPGLLT 762
C + L+ GAA +T
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMT 133
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 50.4 bits (119), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
L++++ + P + +DEG LH A G+ +K V GV++N D GWT LH AA
Sbjct: 52 LVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAA 111
Query: 741 YCGREKTVAVLLSLGAAPGLLT 762
C + L+ GAA +T
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMT 133
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 897 LRPVQGDGLAHSAAIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQAR 946
L ++ D L +A I+IQK RGW RK+++ +R+ + IQ +VRGHQAR
Sbjct: 759 LEKIRADKL-RAACIRIQKTIRGWLMRKKYMRMRRAAITIQRYVRGHQAR 807
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 27/45 (60%)
Query: 909 AAIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQARKKYRPII 953
AAI IQK R + RK + +R + +QA +RG+ R KY+ ++
Sbjct: 818 AAIIIQKFQRMYVVRKRYQCMRDATIALQALLRGYLVRNKYQMML 862
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G +DD G LHLAA G+ ++ + G +N RD+ G T LH AA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAAT 89
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G + V VLL GA D + + +T D++ NG++ ++ L
Sbjct: 90 VGHLEIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.044, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L A G D ++ + G +N D +G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
D + RTP LA++ GH I L E
Sbjct: 72 ------DVNARDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 50.1 bits (118), Expect = 7e-06, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N RD +GWT LH AA+ G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + L TP LA+ GH
Sbjct: 72 ------DVNAKDSLGVTPLHLAARRGH 92
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N D G+T LH AA G + V VLL G
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N +D G T LH AA G + V VLL G
Sbjct: 44 DFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA+ GH
Sbjct: 104 A------DVNASDSHGFTPLHLAAKRGH 125
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D+ G LHLAA G+ ++ + G +N +D G+T LH AAY G + V VLL G
Sbjct: 77 DNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ NGH
Sbjct: 72 ------DVNAWDNYGATPLHLAADNGH 92
Score = 37.4 bits (85), Expect = 0.051, Method: Composition-based stats.
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G LHLAA G+ ++ + G +N D G T LH AA G + V VLL GA
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGA-- 104
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP LA+ +GH
Sbjct: 105 ----DVNAKDYEGFTPLHLAAYDGH 125
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G LH+AA+ GY +K + A +N +D GWT LH AA+ G+E+ +L+
Sbjct: 199 GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE----- 253
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
L D + +T D+A + I G+L E
Sbjct: 254 -NLCDMEAVNKVGQTAFDVADED----ILGYLEE 282
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 23/48 (47%)
Query: 715 IKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
+K V G +IN D GW LH AA CG L+S GA G +
Sbjct: 89 VKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVN 136
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 47.8 bits (112), Expect = 4e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D GWT LH AAY G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + L TP LA+ GH
Sbjct: 72 ------DVNADDSLGVTPLHLAADRGH 92
Score = 43.5 bits (101), Expect = 6e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 8/96 (8%)
Query: 697 DEGQGV--LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
D+ GV LHLAA G+ ++ + G +N D +G+T LH AA G + V VLL
Sbjct: 76 DDSLGVTPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKH 135
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ NG++ ++ L
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 36.2 bits (82), Expect = 0.11, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N D G T LH AA G + V VLL G
Sbjct: 44 DHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA++ GH
Sbjct: 104 A------DVNANDHNGFTPLHLAANIGH 125
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 47.4 bits (111), Expect = 4e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA +G+ ++ + G +N D SG T LH AA G + V VLL G
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + + + TP LA+ GH
Sbjct: 104 A------DVNADDTIGSTPLHLAADTGH 125
Score = 43.1 bits (100), Expect = 8e-04, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
LD G LHLAA G+ ++ + G +N D G T LH AA G + V VLL
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKY 135
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ NG++ ++ L
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.041, Method: Composition-based stats.
Identities = 40/122 (32%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL----AEXXXXXXXXXXKMNDSADDGA 812
L +F S TP LA+ GH I L A+ ++ +AD G
Sbjct: 72 DVNAL-----DFSGS-TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGH 125
Query: 813 LE 814
LE
Sbjct: 126 LE 127
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G +DD G LHLAA G+ ++ + G +N D+ G T LH AA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAAT 89
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G + V VLL GA D + + +T D++ NG++ ++ L
Sbjct: 90 VGHLEIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.4 bits (85), Expect = 0.045, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L A G D ++ + G +N D +G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
D + RTP LA++ GH I L E
Sbjct: 72 ------DVNASDIWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 77 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA G+ ++ + AG +N +D G+T LH AA G + V VLL G
Sbjct: 44 DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + + TP LA+ GH
Sbjct: 104 A------DVNAKDKDGYTPLHLAAREGH 125
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N +D G+T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP LA+ GH
Sbjct: 72 ------DVNAKDKDGYTPLHLAAREGH 92
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 31/96 (32%), Positives = 50/96 (52%), Gaps = 6/96 (6%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+D G LHLAASLG+ ++ + G +N +D +G T L+ AAY G + V VLL
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH 123
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ G++ ++ L
Sbjct: 124 GA------DVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G D G+ LH+AA++G+ ++ + G +N D +G T LH AA
Sbjct: 18 VRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAAS 77
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGH 783
G + V VLL GA D + + TP LA+ GH
Sbjct: 78 LGHLEIVEVLLKYGA------DVNAKDATGITPLYLAAYWGH 113
Score = 33.9 bits (76), Expect = 0.51, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G N D G T LH AA G + V VLL GA
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGA 59
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+S GH
Sbjct: 60 ------DVNAVDTNGTTPLHLAASLGH 80
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 47.0 bits (110), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D+ GWT LH AAY G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGRDDEVRILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + L TP LA+ GH
Sbjct: 72 ------DVNAYDTLGSTPLHLAAHFGH 92
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N +D +G T LH AA G + V VLL G
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ +NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISINNGNEDLAEIL 165
Score = 39.3 bits (90), Expect = 0.013, Method: Composition-based stats.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LHLAA G+ ++ + G +N D G T LH AA+ G + V VLL GA
Sbjct: 51 LHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGA------ 104
Query: 763 DPSPEFPLSRTPSDLASSNGH 783
D + + TP LA++ GH
Sbjct: 105 DVNAKDDNGITPLHLAANRGH 125
Score = 29.6 bits (65), Expect = 8.5, Method: Composition-based stats.
Identities = 19/59 (32%), Positives = 28/59 (47%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
DD G LHLAA+ G+ ++ + G +N +D G TA + G E +L L
Sbjct: 110 DDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDKFGKTAFDISINNGNEDLAEILQKL 168
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.6 bits (109), Expect = 8e-05, Method: Composition-based stats.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G LD++G LHLAA LG+ ++ + G +N D G T LH AA
Sbjct: 30 VRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAI 89
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G + V VLL GA D + + +T D++ NG++ ++ L
Sbjct: 90 RGHLEIVEVLLKHGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 38.9 bits (89), Expect = 0.014, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + E TP LA+ GH
Sbjct: 72 ------DVNAEDNFGITPLHLAAIRGH 92
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 46.2 bits (108), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D++G LHLAAS G+ ++ + G +N DL+G T LH AA G + V VLL G
Sbjct: 44 DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA+ GH
Sbjct: 104 A------DVNAYDNDGHTPLHLAAKYGH 125
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA+ G+ ++ + G +N D G T LH AA G + V VLL G
Sbjct: 77 DLTGITPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 37.4 bits (85), Expect = 0.040, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G+T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA++ GH
Sbjct: 72 ------DVNASDLTGITPLHLAAATGH 92
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G LH+AAS G D +K + G +N + +G T LH+AA R + +LL G
Sbjct: 70 DDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 756 AAP 758
A P
Sbjct: 130 ANP 132
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 34/61 (55%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D + + LH A S G+ ++ + GV +N +D +GW+ LH AA G ++ V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 756 A 756
A
Sbjct: 97 A 97
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G LH+AAS G D +K + G +N + +G T LH+AA R + +LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 756 AAP 758
A P
Sbjct: 130 ANP 132
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D + + LH A S G+ ++ + GV +N +D +GW+ LH AA GR++ V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKG 96
Query: 756 A 756
A
Sbjct: 97 A 97
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G LH+AAS G D +K + G +N + +G T LH+AA R + +LL G
Sbjct: 70 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129
Query: 756 AAP 758
A P
Sbjct: 130 ANP 132
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D + + LH A S G+ ++ + GV +N +D +GW+ LH AA GR++ V LL G
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 96
Query: 756 A 756
A
Sbjct: 97 A 97
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 34/63 (53%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G LH+AAS G D +K + G +N + +G T LH+AA R + +LL G
Sbjct: 71 DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 130
Query: 756 AAP 758
A P
Sbjct: 131 ANP 133
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 35/61 (57%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D + + LH A S G+ ++ + GV +N +D +GW+ LH AA GR++ V LL G
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKG 97
Query: 756 A 756
A
Sbjct: 98 A 98
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 6/109 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G +DD G LHLAA G+ ++ + G +N D G T LH AA
Sbjct: 30 VRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAAT 89
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
G + V VLL GA D + + +T D++ NG++ ++ L
Sbjct: 90 VGHLEIVEVLLEYGA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 37.7 bits (86), Expect = 0.033, Method: Composition-based stats.
Identities = 33/96 (34%), Positives = 44/96 (45%), Gaps = 7/96 (7%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L A G D ++ + G +N D +G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-ATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAE 792
D + RTP LA++ GH I L E
Sbjct: 72 ------DVNASDSWGRTPLHLAATVGHLEIVEVLLE 101
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N D +GWT LH AA G+ + V VLL G
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHG 128
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + L T D++ + G + ++ L
Sbjct: 129 A------DVNAQDALGLTAFDISINQGQEDLAEIL 157
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 33/61 (54%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G LHLAA+ G ++ + G +N D +G T LH AAY G + V VLL G
Sbjct: 36 DDNGLTPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEVLLKHG 95
Query: 756 A 756
A
Sbjct: 96 A 96
Score = 37.7 bits (86), Expect = 0.036, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA+ G D ++ + G +N D +G T LH AA G+ + V VLL GA
Sbjct: 5 DLGKKLLEAAAA-GQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGA 63
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ +GH
Sbjct: 64 ------DVNASDSAGITPLHLAAYDGH 84
>pdb|2IX7|C Chain C, Structure Of Apo-Calmodulin Bound To Unconventional Myosin
V
Length = 58
Score = 45.1 bits (105), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/39 (46%), Positives = 28/39 (71%)
Query: 908 SAAIQIQKKFRGWKKRKEFLLIRQRIVKIQAHVRGHQAR 946
+A I+IQK RGW RK +L +++ + +Q +VRG+QAR
Sbjct: 6 AACIRIQKTIRGWLLRKRYLCMQRAAITVQRYVRGYQAR 44
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 44.3 bits (103), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LHL + G+ I+ + +N D SGWT LH AAY G + V VLL GA
Sbjct: 51 LHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGA------ 104
Query: 763 DPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ +GH
Sbjct: 105 DVNAMDYQGYTPLHLAAEDGH 125
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N D G+T LH AA G + V VLL G
Sbjct: 77 DKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 3.4, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 11/122 (9%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH G + + VLL A
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL----AEXXXXXXXXXXKMNDSADDGA 812
D + TP LA+ GH I L A+ ++ +A+DG
Sbjct: 72 ------DVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAAEDGH 125
Query: 813 LE 814
LE
Sbjct: 126 LE 127
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 43.9 bits (102), Expect = 5e-04, Method: Composition-based stats.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA G+ ++ + G +N D G+T LH AA G + V VLL G
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYG 136
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 137 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 42.4 bits (98), Expect = 0.002, Method: Composition-based stats.
Identities = 32/88 (36%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DD G+ LHLAA G+ ++ + G +N D G T LH AA G + V VLL G
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEVLLKNG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA+ GH
Sbjct: 104 A------DVNATDTYGFTPLHLAADAGH 125
Score = 38.1 bits (87), Expect = 0.029, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 53/122 (43%), Gaps = 11/122 (9%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D SG T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL----AEXXXXXXXXXXKMNDSADDGA 812
D + + TP LA+ GH I L A+ ++ +AD G
Sbjct: 72 ------DVNAADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGH 125
Query: 813 LE 814
LE
Sbjct: 126 LE 127
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 43.1 bits (100), Expect = 0.001, Method: Composition-based stats.
Identities = 32/87 (36%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D SGWT LH AA+ G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ GH
Sbjct: 72 ------DVNAVDHAGMTPLRLAALFGH 92
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+D G L LAA G+ ++ + G +N D+ G T LH AA G + V VLL
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN 135
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ NG++ ++ L
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 6/88 (6%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LH+AAS G+ ++ + G +N +D+ TALHWA ++ V +L+ GA
Sbjct: 71 LHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGA------ 124
Query: 763 DPSPEFPLSRTPSDLASSNGHKGISGFL 790
D + +T D++ NG++ ++ L
Sbjct: 125 DVHTQSKFCKTAFDISIDNGNEDLAEIL 152
Score = 34.7 bits (78), Expect = 0.27, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 30/66 (45%)
Query: 691 GPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAV 750
P D G LHLAA G+ + + AGVS + R T LH AA G V V
Sbjct: 26 APFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 751 LLSLGA 756
LL GA
Sbjct: 86 LLKHGA 91
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
+R + +G +D+ G LHLAA G+ ++ + G ++ D+ G+T LH AA
Sbjct: 30 VRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAM 89
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGH 783
G + V VLL GA D + TP LA+ GH
Sbjct: 90 TGHLEIVEVLLKYGA------DVNAFDMTGSTPLHLAADEGH 125
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LHLAA G+ ++ + G +N D++G T LH AA G + V VLL GA
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGA------ 137
Query: 763 DPSPEFPLSRTPSDLASSNGHKGIS 787
D + + +T D++ NG++ ++
Sbjct: 138 DVNAQDKFGKTAFDISIDNGNEDLA 162
Score = 38.9 bits (89), Expect = 0.015, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 52/122 (42%), Gaps = 11/122 (9%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D +G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL----AEXXXXXXXXXXKMNDSADDGA 812
D TP LA+ GH I L A+ ++ +AD+G
Sbjct: 72 ------DVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAADEGH 125
Query: 813 LE 814
LE
Sbjct: 126 LE 127
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 42.7 bits (99), Expect = 0.001, Method: Composition-based stats.
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 689 GKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
G P ++D EG +HLAA G+ + + G ++ D +G T L WAAY
Sbjct: 99 GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAY 151
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 42.0 bits (97), Expect = 0.002, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 34/61 (55%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D+ G LHLAA G+ ++ + G ++ D+ G+T LH AAY G + V VLL G
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNG 103
Query: 756 A 756
A
Sbjct: 104 A 104
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 42/87 (48%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D +G T LH AAY G + V VLL GA
Sbjct: 13 DLGRKLLE-AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D S F TP LA+ GH
Sbjct: 72 D----VDASDVF--GYTPLHLAAYWGH 92
Score = 39.7 bits (91), Expect = 0.010, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 6/92 (6%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G LHLAA G+ ++ + G +N D G T LH AA G + V VLL GA
Sbjct: 80 GYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGA-- 137
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
D + + +T D++ NG++ ++ L
Sbjct: 138 ----DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 31.2 bits (69), Expect = 3.1, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+D +G LHLAA GY ++ + G +N +D G TA + G E +L L
Sbjct: 109 MDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+D G LHLAA +G+ ++ + G +N D G T LH AA G + V VLL
Sbjct: 76 IDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ NG++ ++ L
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA+ G+ ++ + G +N D+ G T LH AA G + V VLL G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA+ GH
Sbjct: 104 A------DVNAVDTWGDTPLHLAAIMGH 125
Score = 36.2 bits (82), Expect = 0.093, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D SG T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ GH
Sbjct: 72 ------DVNAIDIXGSTPLHLAALIGH 92
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 41.2 bits (95), Expect = 0.003, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+D G LHLAA +G+ ++ + G +N D G T LH AA G + V VLL
Sbjct: 76 IDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKH 135
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
GA D + + +T D++ NG++ ++ L
Sbjct: 136 GA------DVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 31/88 (35%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA+ G+ ++ + G +N D+ G T LH AA G + V VLL G
Sbjct: 44 DASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGH 783
A D + TP LA+ GH
Sbjct: 104 A------DVNAVDTWGDTPLHLAAIMGH 125
Score = 37.7 bits (86), Expect = 0.037, Method: Composition-based stats.
Identities = 31/87 (35%), Positives = 41/87 (47%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D SG T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP LA+ GH
Sbjct: 72 ------DVNAIDIMGSTPLHLAALIGH 92
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 30/55 (54%)
Query: 698 EGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLL 752
+G L LAA L + ++ +TA IN D SG TALHWAA + V +LL
Sbjct: 117 DGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILL 171
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 40.0 bits (92), Expect = 0.006, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDL-SGWTALHWAAYCGREKTVAVLLS 753
+D+ G+ L A LG D ++ AG ++ RD+ G TALH AA R + V L+
Sbjct: 72 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 131
Query: 754 LGA 756
LGA
Sbjct: 132 LGA 134
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 40.0 bits (92), Expect = 0.007, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDL-SGWTALHWAAYCGREKTVAVLLS 753
+D+ G+ L A LG D ++ AG ++ RD+ G TALH AA R + V L+
Sbjct: 73 VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 754 LGA 756
LGA
Sbjct: 133 LGA 135
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 40.0 bits (92), Expect = 0.008, Method: Composition-based stats.
Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N +D G+T LH AA G + V VLL GA
Sbjct: 1 DLGKKLLE-AARAGQDDEVRILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGA 59
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
D + + +T D++ NG++ ++ L
Sbjct: 60 ------DVNAQDKFGKTAFDISIDNGNEDLAEIL 87
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 39.7 bits (91), Expect = 0.008, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D +G LHLAA + ++ + G +N D G T LH AA G + V VLL G
Sbjct: 44 DRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 104 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 30.0 bits (66), Expect = 7.0, Method: Composition-based stats.
Identities = 29/87 (33%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + TP LA+ GH
Sbjct: 72 ------DVNAHDNDGSTPLHLAALFGH 92
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 39.7 bits (91), Expect = 0.009, Method: Composition-based stats.
Identities = 27/95 (28%), Positives = 47/95 (49%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D+ G L+LA + G+ ++ + G +N D G+T LH AA+ G + VLL G
Sbjct: 44 DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 104 A------DVNAQDKFGKTAFDISIGNGNEDLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 39.3 bits (90), Expect = 0.011, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 6/92 (6%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
G LHLAA LG+ ++ + G +N +G T LH AA+ + V VLL GA
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGA-- 104
Query: 759 GLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
D + + +T D++ NG++ ++ L
Sbjct: 105 ----DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.24, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ G +N D G T LH AA G + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILTANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + RTP LA+ H
Sbjct: 72 ------DVNATGNTGRTPLHLAAWADH 92
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LH+AA ++ ++ G +N D G TALH AA G +T +LLS G+ P +++
Sbjct: 251 LHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIIS 310
Score = 35.4 bits (80), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 9/82 (10%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LH A S G+ + + G +N DL +T LH AA R + ++LLS G
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 756 AAPGLLT---------DPSPEF 768
A P L+ P+PE
Sbjct: 148 ADPTLVNCHGKSAVDMAPTPEL 169
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
+++ + + G P + + + + LH+AA G+ K + +N + T LH AA
Sbjct: 29 IVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAA 88
Query: 741 YCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGH 783
G V +LL A P L T TP +A+ GH
Sbjct: 89 RIGHTNMVKLLLENNANPNLATTA------GHTPLHIAAREGH 125
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 17/150 (11%)
Query: 676 KLYSWLLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTA 735
++ + LL K G + G LHL A G+ + GV ++ G+T
Sbjct: 259 EMVALLLSKQANGNLG----NKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTP 314
Query: 736 LHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAEXXX 795
LH A++ G K V LL A D + + L +P A+ GH I L +
Sbjct: 315 LHVASHYGNIKLVKFLLQHQA------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA 368
Query: 796 XXXXXXXKMNDSADDGALEDSIAKAVQTVS 825
N+ + DG +IAK + +S
Sbjct: 369 SP-------NEVSSDGTTPLAIAKRLGYIS 391
Score = 31.2 bits (69), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 39/88 (44%), Gaps = 6/88 (6%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LH+AA + + G S N + G T LH AA G + VA+LLS A G L
Sbjct: 216 LHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG 274
Query: 763 DPSPEFPLSRTPSDLASSNGHKGISGFL 790
+ S TP L + GH ++ L
Sbjct: 275 NKS-----GLTPLHLVAQEGHVPVADVL 297
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 26/53 (49%)
Query: 700 QGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLL 752
Q LH AA +G+ +K + + N +G T LH AA G +TV LL
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 36/81 (44%)
Query: 678 YSWLLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALH 737
++ +++ + E+ P + G LH+AA G+ + + S G+T LH
Sbjct: 92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH 151
Query: 738 WAAYCGREKTVAVLLSLGAAP 758
AA G+ + +LL A P
Sbjct: 152 VAAKYGKVRVAELLLERDAHP 172
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAG-VSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
D EG LHLAA G+ ++ ++ G + +N +D GWT + WA V +LLS
Sbjct: 74 DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK 133
Query: 755 GA 756
G+
Sbjct: 134 GS 135
Score = 30.4 bits (67), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 714 AIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
A+K + AG ++ +D G T LH AA G + V LLS G
Sbjct: 59 AVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG 100
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 715 IKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLS 753
+K ++ G IN RD LHWAA+ G +LL+
Sbjct: 127 VKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA 165
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 36.2 bits (82), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAA 757
LHLA G+ +K + + N +DLSG T L +A G + VA+LL GA+
Sbjct: 123 LHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGAS 177
Score = 32.3 bits (72), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 48/136 (35%), Gaps = 6/136 (4%)
Query: 682 LRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAY 741
L KV G G + +G LH+AA G I + G + R+ LH A
Sbjct: 69 LAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQ 128
Query: 742 CGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAEXXXXXXXXX 801
G + V LL A P D S TP A S GH + L +
Sbjct: 129 QGHFQVVKCLLDSNAKPN-KKDLS-----GNTPLIYACSGGHHELVALLLQHGASINASN 182
Query: 802 XKMNDSADDGALEDSI 817
K N + + +E +
Sbjct: 183 NKGNTALHEAVIEKHV 198
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 36.2 bits (82), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKP-TVTAGVSINFRDLSGWTALHWA 739
++++ ++ P ++EG LH A G +++I +TAG ++N D GWT LH A
Sbjct: 36 VVQQAVKEMNDPSQPNEEGITALH-NAICGANYSIVDFLITAGANVNSPDSHGWTPLHCA 94
Query: 740 AYCGREKTVAVLLSLGAA 757
A C L+ GAA
Sbjct: 95 ASCNDTVICMALVQHGAA 112
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 35.0 bits (79), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLL 752
G+ +LH+A+ G +++ + G N +D +GWT LH A G K V +LL
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLL 63
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
+N D G+T L WA+ G +TV LL GA P +L E LS LAS+ G+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALS-----LASTGGYT 82
Query: 785 GISGFLAE 792
I G L E
Sbjct: 83 DIVGLLLE 90
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.7 bits (78), Expect = 0.26, Method: Composition-based stats.
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 7/101 (6%)
Query: 690 KGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVA 749
+G + D G+ +L AA G D ++ + G + +D +G T LH AA G + V
Sbjct: 16 RGSHMGSDLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVK 74
Query: 750 VLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
+LL GA D + +T D++ NG++ ++ L
Sbjct: 75 LLLEAGA------DVXAQDKFGKTAFDISIDNGNEDLAEIL 109
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 34.7 bits (78), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 6/68 (8%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
+N D G+T L WA+ G +TV LL GA P +L E LS LAS+ G+
Sbjct: 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKER-ESALS-----LASTGGYT 82
Query: 785 GISGFLAE 792
I G L E
Sbjct: 83 DIVGLLLE 90
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 34.7 bits (78), Expect = 0.29, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 7/94 (7%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G + +D +G T LH AA G + V +LL GA
Sbjct: 5 DLGKKLLE-AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA 63
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
D + + +T D++ NG++ ++ L
Sbjct: 64 ------DVNAQDKFGKTAFDISIDNGNEDLAEIL 91
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 34.3 bits (77), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 715 IKPTVTAGVSINFRDL-SGWTALHWAAYCGREKTVAVLLSLGAAPGL 760
++ + G ++NF++ GWT LH A RE V +LL GA P L
Sbjct: 41 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 87
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 4/90 (4%)
Query: 671 KIMKEKLYSWLLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDL 730
++ +E + LLR G P + G LAA G +K ++ G +N D
Sbjct: 68 QMSREDIVELLLRH----GADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDF 123
Query: 731 SGWTALHWAAYCGREKTVAVLLSLGAAPGL 760
G+TA AA G+ K + L GA L
Sbjct: 124 YGFTAFMEAAVYGKVKALKFLYKRGANVNL 153
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 34.3 bits (77), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
+N D G++ LHWA GR V +L+ GA ++ TP LA+S+GH+
Sbjct: 27 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------TPLHLAASHGHR 80
Query: 785 GI 786
I
Sbjct: 81 DI 82
Score = 30.4 bits (67), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LHLAAS G+ ++ + IN + G LH+A + G+++ L++ GA +
Sbjct: 71 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-IC 129
Query: 763 DPSPEFPLSRTPSDL 777
+ E P+ + + L
Sbjct: 130 NKYGEMPVDKAKAPL 144
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 34.3 bits (77), Expect = 0.40, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
D G LHLAA + ++ + G +N D G T LH A G + V VLL G
Sbjct: 44 DKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHG 103
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFL 790
A D + + +T D++ NG++ ++ L
Sbjct: 104 A------DVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 1.8, Method: Composition-based stats.
Identities = 28/87 (32%), Positives = 38/87 (43%), Gaps = 7/87 (8%)
Query: 697 DEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
D G+ +L AA G D ++ + G +N D G T LH AA + V VLL GA
Sbjct: 13 DLGKKLLE-AARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGA 71
Query: 757 APGLLTDPSPEFPLSRTPSDLASSNGH 783
D + + TP L + GH
Sbjct: 72 ------DVNAIDAIGETPLHLVAMYGH 92
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
+N D G++ LHWA GR V +L+ GA ++ TP LA+S+GH+
Sbjct: 32 LNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD------TPLHLAASHGHR 85
Query: 785 GI 786
I
Sbjct: 86 DI 87
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 703 LHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLT 762
LHLAAS G+ ++ + IN + G LH+A + G+++ L++ GA +
Sbjct: 76 LHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS-IC 134
Query: 763 DPSPEFPLSRTPSDL 777
+ E P+ + + L
Sbjct: 135 NKYGEMPVDKAKAPL 149
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 33.9 bits (76), Expect = 0.47, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 715 IKPTVTAGVSINFRDLSG-WTALHWAAYCGREKTVAVLLSLGAAPGL 760
++ + G ++NF++ G WT LH A RE V +LL GA P L
Sbjct: 21 VQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67
Score = 30.8 bits (68), Expect = 3.7, Method: Composition-based stats.
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 7/111 (6%)
Query: 649 QMVEANPEKNLSQHVEKYQILQ---KIMKEKLYSWLLRKVCEDGKGPCILDDEGQGVLHL 705
Q++E N + + L ++ +E + LLR G P + G L
Sbjct: 23 QLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH----GADPVLRKKNGATPFLL 78
Query: 706 AASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGA 756
AA G +K ++ G +N D G+TA AA G+ K + L GA
Sbjct: 79 AAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGA 129
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 29/60 (48%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
DDE +H+AA G ++ + GVS ++ G TALH A G T L S+G
Sbjct: 17 DDENXEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVG 76
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 723 VSINFRDLSGWTALHWAAYCGRE--KTVAVLLSLGAAPGLLTDPSPEFPLSR 772
+ + + G TALHW G E + + +L+ LGA+P D + E PL R
Sbjct: 129 IGSHVKHCKGQTALHWCVGLGPEYLEXIKILVQLGASP-TAKDKADETPLXR 179
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
+D GQ LHLAA LG ++ AG + + G TALH A VLL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ-- 99
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASS 780
P P P + + L S
Sbjct: 100 --------PRPSHPRDASDTYLTQS 116
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 33.5 bits (75), Expect = 0.69, Method: Composition-based stats.
Identities = 26/85 (30%), Positives = 33/85 (38%), Gaps = 10/85 (11%)
Query: 696 DDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLG 755
+D GQ LHLAA LG ++ AG + + G TALH A VLL
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQ-- 99
Query: 756 AAPGLLTDPSPEFPLSRTPSDLASS 780
P P P + + L S
Sbjct: 100 --------PRPSHPRDASDTYLTQS 116
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 32.3 bits (72), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 698 EGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVL 751
EG+ L +A+ G +K + G I+ RDL+G TA A GR++ + +
Sbjct: 133 EGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 32/73 (43%)
Query: 684 KVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCG 743
K+ G D G+ L + GY + G ++N R+L G T L A+ G
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYG 145
Query: 744 REKTVAVLLSLGA 756
R + V LL LGA
Sbjct: 146 RSEIVKKLLELGA 158
>pdb|1GM5|A Chain A, Structure Of Recg Bound To Three-Way Dna Junction
Length = 780
Score = 32.0 bits (71), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 983 MNPNPQHMPLKEDDYDFLKDGRKQTEERLQKALGRVKSMVQYPEARAQYR 1032
+N H LKE D L++ K EE+LQ L VK + PEAR +YR
Sbjct: 37 VNTRRIHQLLKELDDPLLEN--KDLEEKLQAFLDYVKEIPNLPEARKRYR 84
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 32.0 bits (71), Expect = 2.0, Method: Composition-based stats.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 4/80 (5%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAG----VSINFRDLSGWTAL 736
++R + G P LD GQ HLA ++ + + + + R+ G TAL
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 737 HWAAYCGREKTVAVLLSLGA 756
H A ++TV +LL GA
Sbjct: 121 HVAVNTECQETVQLLLERGA 140
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
IN D G+T L WAA G+ V LL GA P LL E LS LA S G+
Sbjct: 45 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALS-----LACSKGYT 98
Query: 785 GISGFL 790
I L
Sbjct: 99 DIVKML 104
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
IN D G+T L WAA G+ V LL GA P LL E LS LA S G+
Sbjct: 27 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALS-----LACSKGYT 80
Query: 785 GISGFLAE 792
I L +
Sbjct: 81 DIVKMLLD 88
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Query: 725 INFRDLSGWTALHWAAYCGREKTVAVLLSLGAAPGLLTDPSPEFPLSRTPSDLASSNGHK 784
IN D G+T L WAA G+ V LL GA P LL E LS LA S G+
Sbjct: 29 INHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLL-GKGRESALS-----LACSKGYT 82
Query: 785 GISGFL 790
I L
Sbjct: 83 DIVKML 88
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 31.6 bits (70), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+ ++G LHLA + + + G S+ +D LH AA G K + +L L
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAEXXXXXXXXXXKMNDSADDGALE 814
G + D PL A + GH + L E A+D AL
Sbjct: 163 GKSAVNWQDKQGWTPLFH-----ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 815 DSIAK 819
+ + K
Sbjct: 218 EQVKK 222
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 31.2 bits (69), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 897 LRPVQGDGLAHSAAIQIQKKFRGWKKRKEFLLIRQ 931
L ++ D L +A I+IQK RGW RK+++ +R+
Sbjct: 759 LEKIRADKL-RAACIRIQKTIRGWLMRKKYMRMRR 792
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 31.2 bits (69), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 46/125 (36%), Gaps = 5/125 (4%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+ ++G LHLA + + + G S+ +D LH AA G K + +L L
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAEXXXXXXXXXXKMNDSADDGALE 814
G + D PL A + GH + L E A+D AL
Sbjct: 163 GKSAVNWQDKQGWTPLFH-----ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 815 DSIAK 819
+ + K
Sbjct: 218 EQVKK 222
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 31.2 bits (69), Expect = 3.3, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
+ R++ G P + D G V+H AA G+ ++ + +N D G LH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 741 YCGREKTVAVLLSLGAA 757
G + V L+ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 51/137 (37%), Gaps = 6/137 (4%)
Query: 695 LDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSL 754
+ ++G LHLA + + + G S+ +D LH AA G K + +L L
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL 162
Query: 755 GAAPGLLTDPSPEFPLSRTPSDLASSNGHKGISGFLAEXXXXXXXXXXKMNDSADDGALE 814
G + D PL A + GH + L E A+D AL
Sbjct: 163 GKSAVNWQDKQGWTPLFH-----ALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN 217
Query: 815 DSIAK-AVQTVSEKTAT 830
+ + K + V +K A
Sbjct: 218 EQVKKFFLNNVVDKLAA 234
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 699 GQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAAYCGREKTVAVLLSLGAAP 758
GQ L LA S G +K + +N +D G TAL A G ++ +LL++ +
Sbjct: 183 GQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCD 242
Query: 759 GLLTD 763
LTD
Sbjct: 243 ISLTD 247
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 30.0 bits (66), Expect = 6.7, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
+ R++ G P + D G V+H AA G+ ++ + +N D G LH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIEDNEGNLPLHLAA 111
Query: 741 YCGREKTVAVLLSLGAA 757
G + V L+ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 30.0 bits (66), Expect = 7.8, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
+ R++ G P + D G V+H AA G+ ++ + +N D G LH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 741 YCGREKTVAVLLSLGAA 757
G + V L+ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 30.0 bits (66), Expect = 8.1, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%)
Query: 681 LLRKVCEDGKGPCILDDEGQGVLHLAASLGYDWAIKPTVTAGVSINFRDLSGWTALHWAA 740
+ R++ G P + D G V+H AA G+ ++ + +N D G LH AA
Sbjct: 52 IARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAA 111
Query: 741 YCGREKTVAVLLSLGAA 757
G + V L+ A+
Sbjct: 112 KEGHLRVVEFLVKHTAS 128
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.132 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,335,743
Number of Sequences: 62578
Number of extensions: 1309219
Number of successful extensions: 2797
Number of sequences better than 100.0: 95
Number of HSP's better than 100.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 2556
Number of HSP's gapped (non-prelim): 232
length of query: 1082
length of database: 14,973,337
effective HSP length: 109
effective length of query: 973
effective length of database: 8,152,335
effective search space: 7932221955
effective search space used: 7932221955
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)