BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 001411
(1082 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 761 bits (1964), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/1099 (38%), Positives = 628/1099 (57%), Gaps = 40/1099 (3%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G + ++ FF GF +GFT W+LTL+ LA+ P++ ++ G + +S+ ++K AY
Sbjct: 185 KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYA 244
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AG VAEE+++ +R V AF G+ K +E Y+++L+EA + G K + I +G + L++
Sbjct: 245 KAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYA 304
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXX- 180
++AL WY LV + + G+ T +V+ F++GQ
Sbjct: 305 SYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364
Query: 181 -----XXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGK 234
S S +P + + G +EF + F+YPSR + + + LN V +G+
Sbjct: 365 IDNKPSIDSFSKSGHKPDN-------IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ 417
Query: 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 294
T A VG SG GKST + ++QRLY+P G + +DG D++++ +++LRE +G+VSQEP LFA
Sbjct: 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477
Query: 295 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354
T+IA NI G+ED +MD + +A K ANA+ F+ LP + T VGE G QLSGGQKQRIAI
Sbjct: 478 TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAI 537
Query: 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 414
ARA++RNPKILLLDEATSALD ESE +VQ AL+K RTTIV+AHRLSTVR+ D I
Sbjct: 538 ARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGF 597
Query: 415 KNGQVVESGTHVDLISKGGEYAALVNLQ--------------SSEHLSNPXXXXXXXXXX 460
G +VE G H +L+ + G Y LV Q S + + N
Sbjct: 598 DGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSS 657
Query: 461 XXXFRDFPSSRRYDVEFESSKRRELQSSD--QSFAPSPSIWELLKLNAAEWPYAVLGSVG 518
R S R + + R+L + + P S W +LKLN+ EWPY V+G
Sbjct: 658 LIRRR----STRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFC 713
Query: 519 AILAGMEAPLFALGITHILTAFYS--PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576
AI+ G P F++ + ++ F + P ++Q ++ + +L+F+ L +++ + LQ +
Sbjct: 714 AIINGGLQPAFSVIFSKVVGVFTNGGPPETQ-RQNSNLFSLLFLILGIISFITFFLQGFT 772
Query: 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII 636
+ GE LT R+R +F ++L ++ WFD +N TG L + LA DA V+ A RL++I
Sbjct: 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVI 832
Query: 637 VQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSV 696
QN+A T +I+ I W+ A V E L G + + +
Sbjct: 833 FQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKI 892
Query: 697 AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 756
A EAI N RTV + E++ +A L P + A+ + H+ G + +Q + SYA
Sbjct: 893 ATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAA 952
Query: 757 LWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKT 816
+ + L+ Q+ F +++ F PD K + + + I+ +
Sbjct: 953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012
Query: 817 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 876
I + ++GN++ V F YP RP I + + L+L+V G++LA+VG SG GK
Sbjct: 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 936
STV+ L+ RFYDP++G+V +DG +I+ LN++ LR ++G+V QEP LF +I ENI YG+
Sbjct: 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132
Query: 937 D--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
S E+++A K AN H FI +P+ Y + VGD+G QLSGGQKQR+AIARA+++ P I
Sbjct: 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
LLLDEATSALDT SE ++QEALDK EGRT I++AHRLSTI+NAD I V+Q GKV E G+
Sbjct: 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGT 1252
Query: 1055 HEQLLRKENGIYKQLIRLQ 1073
H+QLL + GIY ++ +Q
Sbjct: 1253 HQQLL-AQKGIYFSMVSVQ 1270
Score = 381 bits (979), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/606 (36%), Positives = 336/606 (55%), Gaps = 31/606 (5%)
Query: 496 PSIWELLKLNAAEWP---YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD------- 545
P++ L A W Y ++G++ AI+ G+ PL L + +F S +
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 546 ----------SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
++++ + A + G+ + V +Q F+ L ++R F A
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
I++ EIGWFD+ ++ G L + L D + + + D++ + Q +A F+I F W
Sbjct: 151 IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 656 RXXXXXXXXXXXX-IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714
+ + A + ++ L F AY++A +VA E +A IRTV A+G +K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKI-LSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267
Query: 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI 774
+ ++ + L + + + + + G + LL SYAL WY + L+ K + G +
Sbjct: 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327
Query: 775 MKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGP---VFGILYRKTAIQPDDPASKEVTEI 831
+ F P+I + A G VF I+ K +I + + I
Sbjct: 328 LTVFF---SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST + L+ R YDP+
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G V IDG DIRT+N+R LR IG+V QEP LF+TTI ENI+YG ED + E+ KA K AN
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
A+ FI ++P + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDEATSALDT SE +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
+Q ALDK EGRTTI++AHRLST+RNAD IA G + E G+H++L+R E GIY +L+
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVM 623
Query: 1072 LQQDKN 1077
Q N
Sbjct: 624 TQTAGN 629
Score = 312 bits (800), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 245/426 (57%), Gaps = 12/426 (2%)
Query: 25 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84
WQLTLL LA+VP+IA+AG +S + K + +GK+A E I R V + E
Sbjct: 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910
Query: 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA 144
K Y+ SL+ + K GI T +++ ++A + LV
Sbjct: 911 KFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENV 970
Query: 145 FTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXX----SHSSERPGDDGITLP 200
++F A+GQ S+S++ G+
Sbjct: 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ-----GLKPN 1025
Query: 201 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
L G ++FS V F YP+RP + V + L+ V G+T A VG SG GKST++ +++R Y+P
Sbjct: 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDRVIEAA 317
+G + LDG ++K L ++WLR Q+G+VSQEP LF SIA NI G S + ++ AA
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K AN H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R P ILLLDEATSALD E
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 378 SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
SE +VQ AL+K RT IV+AHRLST+++ D I+V++NG+V E GTH L+++ G Y +
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Query: 438 LVNLQS 443
+V++Q+
Sbjct: 1266 MVSVQA 1271
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/1099 (38%), Positives = 628/1099 (57%), Gaps = 40/1099 (3%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G + ++ FF GF +GFT W+LTL+ LA+ P++ ++ G + +S+ ++K AY
Sbjct: 185 KIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYA 244
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFC 121
+AG VAEE+++ +R V AF G+ K +E Y+++L+EA + G K + I +G + L++
Sbjct: 245 KAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYA 304
Query: 122 AWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXX- 180
++AL WY LV + + G+ T +V+ F++GQ
Sbjct: 305 SYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKI 364
Query: 181 -----XXXXXSHSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGK 234
S S +P + + G +EF + F+YPSR + + + LN V +G+
Sbjct: 365 IDNKPSIDSFSKSGHKPDN-------IQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQ 417
Query: 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 294
T A VG SG GKST + ++QRLY+P G + +DG D++++ +++LRE +G+VSQEP LFA
Sbjct: 418 TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA 477
Query: 295 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354
T+IA NI G+ED +MD + +A K ANA+ F+ LP + T VGE G QLSGGQKQRIAI
Sbjct: 478 TTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAI 537
Query: 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 414
ARA++RNPKILLLDEATSALD ESE +VQ AL+K RTTIV+AHRLSTVR+ D I
Sbjct: 538 ARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGF 597
Query: 415 KNGQVVESGTHVDLISKGGEYAALVNLQ--------------SSEHLSNPXXXXXXXXXX 460
G +VE G H +L+ + G Y LV Q S + + N
Sbjct: 598 DGGVIVEQGNHDELMREKGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSS 657
Query: 461 XXXFRDFPSSRRYDVEFESSKRRELQSSD--QSFAPSPSIWELLKLNAAEWPYAVLGSVG 518
R S R + + R+L + + P S W +LKLN+ EWPY V+G
Sbjct: 658 LIRRR----STRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFC 713
Query: 519 AILAGMEAPLFALGITHILTAFYS--PHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYF 576
AI+ G P F++ + ++ F + P ++Q ++ + +L+F+ L +++ + LQ +
Sbjct: 714 AIINGGLQPAFSVIFSKVVGVFTNGGPPETQ-RQNSNLFSLLFLILGIISFITFFLQGFT 772
Query: 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII 636
+ GE LT R+R +F ++L ++ WFD +N TG L + LA DA V+ A RL++I
Sbjct: 773 FGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVI 832
Query: 637 VQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSV 696
QN+A T +I+ I W+ A V E L G + + +
Sbjct: 833 FQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKI 892
Query: 697 AREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALG 756
A EAI N RTV + E++ +A L P + A+ + H+ G + +Q + SYA
Sbjct: 893 ATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAC 952
Query: 757 LWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKT 816
+ + L+ Q+ F +++ F PD K + + + I+ +
Sbjct: 953 FRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012
Query: 817 AIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGK 876
I + ++GN++ V F YP RP I + + L+L+V G++LA+VG SG GK
Sbjct: 1013 EIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGK 1072
Query: 877 STVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE 936
STV+ L+ RFYDP++G+V +DG +I+ LN++ LR ++G+V QEP LF +I ENI YG+
Sbjct: 1073 STVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDN 1132
Query: 937 D--ASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
S E+++A K AN H FI +P+ Y + VGD+G QLSGGQKQR+AIARA+++ P I
Sbjct: 1133 SRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHI 1192
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
LLLDEATSALDT SE ++QEALDK EGRT I++AHRLSTI+NAD I V+Q GKV E G+
Sbjct: 1193 LLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGT 1252
Query: 1055 HEQLLRKENGIYKQLIRLQ 1073
H+QLL + GIY ++ +Q
Sbjct: 1253 HQQLL-AQKGIYFSMVSVQ 1270
Score = 382 bits (980), Expect = e-106, Method: Compositional matrix adjust.
Identities = 223/606 (36%), Positives = 336/606 (55%), Gaps = 31/606 (5%)
Query: 496 PSIWELLKLNAAEWP---YAVLGSVGAILAGMEAPLFALGITHILTAFYSPHD------- 545
P++ L A W Y ++G++ AI+ G+ PL L + +F S +
Sbjct: 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTN 90
Query: 546 ----------SQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSA 595
++++ + A + G+ + V +Q F+ L ++R F A
Sbjct: 91 MSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHA 150
Query: 596 ILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSW 655
I++ EIGWFD+ ++ G L + L D + + + D++ + Q +A F+I F W
Sbjct: 151 IMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGW 208
Query: 656 RXXXXXXXXXXXX-IGAFVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEK 714
+ + A + ++ L F AY++A +VA E +A IRTV A+G +K
Sbjct: 209 KLTLVILAISPVLGLSAGIWAKI-LSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQK 267
Query: 715 RISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLCSYALGLWYASVLIKQKGSNFGDI 774
+ ++ + L + + + + + G + LL SYAL WY + L+ K + G +
Sbjct: 268 KELERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQV 327
Query: 775 MKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGP---VFGILYRKTAIQPDDPASKEVTEI 831
+ F P+I + A G VF I+ K +I + + I
Sbjct: 328 LTVFF---SVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNI 384
Query: 832 KGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS 891
+GN+E +N+ F YP R ++ I + LNLKV +G+++A+VG SG GKST + L+ R YDP+
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 892 GTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAAN 951
G V IDG DIRT+N+R LR IG+V QEP LF+TTI ENI+YG ED + E+ KA K AN
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
A+ FI ++P + + VG+RG QLSGGQKQR+AIARA+++NP ILLLDEATSALDT SE +
Sbjct: 505 AYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAV 564
Query: 1012 IQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIR 1071
+Q ALDK EGRTTI++AHRLST+RNAD IA G + E G+H++L+R E GIY +L+
Sbjct: 565 VQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMR-EKGIYFKLVM 623
Query: 1072 LQQDKN 1077
Q N
Sbjct: 624 TQTAGN 629
Score = 313 bits (802), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 245/426 (57%), Gaps = 12/426 (2%)
Query: 25 WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEA 84
WQLTLL LA+VP+IA+AG +S + K + +GK+A E I R V + E
Sbjct: 851 WQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQ 910
Query: 85 KAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGGKA 144
K Y+ SL+ + K GI T +++ ++A + LV
Sbjct: 911 KFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAACFRFGAYLVTQQLMTFENV 970
Query: 145 FTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXX----SHSSERPGDDGITLP 200
++F A+GQ S+S++ G+
Sbjct: 971 LLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEIDSYSTQ-----GLKPN 1025
Query: 201 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
L G ++FS V F YP+RP + V + L+ V G+T A VG SG GKST++ +++R Y+P
Sbjct: 1026 MLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDP 1085
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKED--ASMDRVIEAA 317
+G + LDG ++K L ++WLR Q+G+VSQEP LF SIA NI G S + ++ AA
Sbjct: 1086 MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAA 1145
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K AN H F++ LPD Y T+VG+ GTQLSGGQKQRIAIARA++R P ILLLDEATSALD E
Sbjct: 1146 KEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTE 1205
Query: 378 SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
SE +VQ AL+K RT IV+AHRLST+++ D I+V++NG+V E GTH L+++ G Y +
Sbjct: 1206 SEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKGIYFS 1265
Query: 438 LVNLQS 443
+V++Q+
Sbjct: 1266 MVSVQA 1271
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/1125 (38%), Positives = 611/1125 (54%), Gaps = 74/1125 (6%)
Query: 2 QTGHALRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYG 61
+ G A +YLSQF GF V FT WQLTL+ LAV P+ A+ G A +MST + + Y
Sbjct: 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYA 272
Query: 62 EAGKVAEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLL-- 119
+AGKV EE IS +R V + G +E YS +++EA KK+GV KG+ +G+++G +
Sbjct: 273 KAGKVVEETISSIRTVVSLNGLRYELERYSTAVEEA----KKAGVLKGLFLGISFGAMQA 328
Query: 120 --FCAWALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXX 177
F ++AL + V G N G TT +V+ ALG
Sbjct: 329 SNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASG 388
Query: 178 XXXXXXXXS--HSSERPGDDGITLPKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGK 234
SS + G + K+ G I V F YPSRP + + +N V+AG+
Sbjct: 389 IYEVLDRKPVIDSSSKAGRKDM---KIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445
Query: 235 TFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFA 294
T A VG SG GKSTIIS++ R Y+ GKI +DG D++ + L++LR+ + +VSQEPALF
Sbjct: 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505
Query: 295 TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAI 354
+I NI LGKE + + ++ A K ANA F++ LP+GY T VG+ GTQLSGGQKQRIAI
Sbjct: 506 CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAI 565
Query: 355 ARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 414
ARA++RNPKILLLDEATSALDAESE IVQ+AL+K RTTI++AHRLST+R+ D I+
Sbjct: 566 ARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISC 625
Query: 415 KNGQVVESGTHVDLISKGGEYAALVNLQSSEHL--SNPXXXXXXXXXXXXXFRDFPSSRR 472
KNGQVVE G H L+++ G Y LV Q+ S + R
Sbjct: 626 KNGQVVEVGDHRALMAQQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSR 685
Query: 473 YDVEFESSKRRELQSSDQSFAPSPSI----------------WELLKLNAAEW------- 509
E + R S+ S P I EL + NA +
Sbjct: 686 QASEMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILY 745
Query: 510 ---PYAV---LGSVGAILAGMEAPLFALGITHILTAFY-SPHDSQIKRVVDQ---VALIF 559
P+A+ +G A + G P +++ T + F +P D + Q AL+F
Sbjct: 746 HARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPAD-----FLSQGHFWALMF 800
Query: 560 VGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLA 619
+ LA L +F + E LT +R +F +LS IG+FD +N +G + + LA
Sbjct: 801 LVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLA 860
Query: 620 ADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFL 679
D +R+A+ R S ++ + V +AF W+ I VA +L
Sbjct: 861 TDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIA-----ILPIVAFGQYL 915
Query: 680 KG--FGGDYNRA---YSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLR 734
+G F G ++ ++ + +A EAI N+RTV A E F +L P+K+A+
Sbjct: 916 RGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKE 975
Query: 735 GHISGFGYGVSQ----LLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXX 790
I G YG + LL+ C+Y +GL A ++ +++
Sbjct: 976 AFIQGLSYGCASSVLYLLNTCAYRMGL--ALIITDPPTMQPMRVLRVMYAITISTSTLGF 1033
Query: 791 XXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDI 850
P+ K + A G +FG+L + + I A E ++ G + +NV F YP RP+I
Sbjct: 1034 ATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAG-EKKKLYGKVIFKNVRFAYPERPEI 1092
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR 910
I + L+ V G++LA+VG SG GKSTV++L+ RFYD + G + IDG +I+TLN R
Sbjct: 1093 EILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTR 1152
Query: 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEI--ELMKATKAANAHGFISRMPEGYQSHVG 968
+I +V QEP LF +I ENI YG + +S ++ +A + AN H FI+ +PEG+++ VG
Sbjct: 1153 SQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVG 1212
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMV 1028
DRG QLSGGQKQR+AIARA+++NP ILLLDEATSALDT SE ++QEALD+ EGRT I++
Sbjct: 1213 DRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVI 1272
Query: 1029 AHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
AHRL+T+ NAD IAV+ G + E G+H QL+ E G Y +L + Q
Sbjct: 1273 AHRLNTVMNADCIAVVSNGTIIEKGTHTQLM-SEKGAYYKLTQKQ 1316
Score = 355 bits (912), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 192/502 (38%), Positives = 285/502 (56%), Gaps = 13/502 (2%)
Query: 577 YTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSII 636
Y + E + R+R +IL EI WFD N++G L + L + V+ D++ +
Sbjct: 160 YLYVAEQMNNRLRREFVKSILRQEISWFD--TNHSGTLATKLFDNLERVKEGTGDKIGMA 217
Query: 637 VQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSV 696
Q ++ +T F++AF SW+ A + F Y++A V
Sbjct: 218 FQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKV 277
Query: 697 AREAIANIRTVAA-----YGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQLLSLC 751
E I++IRTV + Y +E+ +++ + + K +L+G G +G Q +
Sbjct: 278 VEETISSIRTVVSLNGLRYELER-----YSTAVEEAKKAGVLKGLFLGISFGAMQASNFI 332
Query: 752 SYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGI 811
S+AL + + NFGD++ +F + A ++ +
Sbjct: 333 SFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEV 392
Query: 812 LYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQ 871
L RK I A ++ +IKG+I + NV F YP RPD+ I +NL+V+AG+++A+VG
Sbjct: 393 LDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452
Query: 872 SGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENI 931
SG GKST+ISL++R+YD + G + IDG D+R +NL LR+ + +V QEPALF+ TI ENI
Sbjct: 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENI 512
Query: 932 KYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKN 991
G E + E++ A K ANA FI +P GY + VGDRG QLSGGQKQR+AIARA+++N
Sbjct: 513 SLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRN 572
Query: 992 PSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAE 1051
P ILLLDEATSALD SE ++Q+ALDK +GRTTI++AHRLSTIRNAD I + G+V E
Sbjct: 573 PKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVE 632
Query: 1052 IGSHEQLLRKENGIYKQLIRLQ 1073
+G H L+ ++ G+Y L+ Q
Sbjct: 633 VGDHRALMAQQ-GLYYDLVTAQ 653
Score = 294 bits (753), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 174/447 (38%), Positives = 252/447 (56%), Gaps = 19/447 (4%)
Query: 10 LSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEE 69
L G + F WQ+ LL +A++P++A + + K + + ++GK+A E
Sbjct: 881 LVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIE 940
Query: 70 IISQVRAVYAFVGEAKAIESYSHSL----KEALKQGKKSGVAKGIGVGLTYGLLFCAWAL 125
I VR V A E E++ L KEA+K+ G++ G + Y L CA+ +
Sbjct: 941 AIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRM 1000
Query: 126 LLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXX 185
L A I+ + + + S LG
Sbjct: 1001 GL--ALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKI 1058
Query: 186 SHSSERPGDDGITL----PKLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVG 240
S D ++L KL G++ F V FAYP RP + + + L+FSV+ G+T A VG
Sbjct: 1059 SKI------DSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVG 1112
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
PSG GKST++++++R Y+ G+I +DG ++K+L + R Q+ +VSQEP LF SIA N
Sbjct: 1113 PSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAEN 1172
Query: 301 ILLGKEDAS--MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAV 358
I+ G + +S M +V EAA+ AN H+F+ LP+G++T+VG+ GTQLSGGQKQRIAIARA+
Sbjct: 1173 IIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARAL 1232
Query: 359 LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQ 418
+RNPKILLLDEATSALD ESE +VQ AL++ RT IV+AHRL+TV + D I V+ NG
Sbjct: 1233 VRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGT 1292
Query: 419 VVESGTHVDLISKGGEYAALVNLQSSE 445
++E GTH L+S+ G Y L Q +E
Sbjct: 1293 IIEKGTHTQLMSEKGAYYKLTQKQMTE 1319
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(nucleotide-free Form)
Length = 595
Score = 344 bits (883), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 215/561 (38%), Positives = 316/561 (56%), Gaps = 24/561 (4%)
Query: 524 MEAPLFALGITHIL----TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579
M AP F I ++ T YS D+ + + A+ G A I VYL+Q
Sbjct: 36 MSAPFFLGKIIDVIYTNPTVDYS--DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS---- 89
Query: 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 639
G+ + R+R S+FS+IL E+ +FD + TG LI+ L++D L+ ++ + LS ++
Sbjct: 90 -GQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRA 146
Query: 640 VALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 699
A + F +S V +L+ + ++AT +A E
Sbjct: 147 GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEE 206
Query: 700 AIANIRTVAAYGIEKRISIQFASELSQ----PNKQALLRGHISGFGYGVSQLLSLCSYAL 755
I N+RTV A+G E ++AS++ K+A R G G+S L + S
Sbjct: 207 RIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG-ATGLSGNLIVLSV-- 263
Query: 756 GLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRK 815
L+ +L+ G++ M +++KG A G ++ +L R+
Sbjct: 264 -LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 322
Query: 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
+ ++ +G +E +NV F YP RP++ IF++ +L + +G A+VG SGSG
Sbjct: 323 PKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSG 382
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
KSTV+SL++R YDP SGT+ +DG+DIR LN LR KIG V QEP LFS +I ENI YG
Sbjct: 383 KSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 442
Query: 936 EDASEI---ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992
+D S + E+ + + ANA FI P+G+ + VG++GV LSGGQKQR+AIARA+LKNP
Sbjct: 443 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 502
Query: 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
ILLLDEATSALD +E L+QEALD+LM+GRT +++AHRLSTI+NA+ +AVL QGK+ E
Sbjct: 503 KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEY 562
Query: 1053 GSHEQLLRKENGIYKQLIRLQ 1073
G HE+LL K NGIY++L+ Q
Sbjct: 563 GKHEELLSKPNGIYRKLMNKQ 583
Score = 291 bits (746), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 257/447 (57%), Gaps = 16/447 (3%)
Query: 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 66
LR +Q VG ++ F L L+VVP +++ Y + L++ + + +A ++
Sbjct: 144 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 203
Query: 67 AEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLTYGLLFCAW 123
AEE I VR V AF E IE Y+ + ++ +K A+ GL+ L+ +
Sbjct: 204 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLS- 262
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXX 183
+L+ G+L+ G+ + ++ + G ++G
Sbjct: 263 --VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIG---GLSSFYSELMKGLGAGGRLWE 317
Query: 184 XXSHSSERPGDDGITLPK--LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVG 240
+ P ++G+ L + G +EF V FAYP+RP + +F++ + S+ +G A VG
Sbjct: 318 LLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVG 377
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
PSGSGKST++S++ RLY+P SG I LDGHD++ L WLR ++G VSQEP LF+ SIA N
Sbjct: 378 PSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 437
Query: 301 ILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357
I G +D S + + A+ ANA +F+ P G+ T VGE G LSGGQKQRIAIARA
Sbjct: 438 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 497
Query: 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 417
+L+NPKILLLDEATSALDAE+E +VQ AL+++M RT +V+AHRLST+++ + + VL G
Sbjct: 498 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQG 557
Query: 418 QVVESGTHVDLISK-GGEYAALVNLQS 443
++ E G H +L+SK G Y L+N QS
Sbjct: 558 KITEYGKHEELLSKPNGIYRKLMNKQS 584
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10
(plate Form)
Length = 619
Score = 342 bits (878), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 214/561 (38%), Positives = 315/561 (56%), Gaps = 24/561 (4%)
Query: 524 MEAPLFALGITHIL----TAFYSPHDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTL 579
M AP F I ++ T YS D+ + + A+ G A I VYL+Q
Sbjct: 67 MSAPFFLGKIIDVIYTNPTVDYS--DNLTRLCLGLSAVFLCGAAANAIRVYLMQTS---- 120
Query: 580 MGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSIIVQN 639
G+ + R+R S+FS+IL E+ +FD + TG LI+ L++D L+ ++ + LS ++
Sbjct: 121 -GQRIVNRLRTSLFSSILRQEVAFFD--KTRTGELINRLSSDTALLGRSVTENLSDGLRA 177
Query: 640 VALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATSVARE 699
A + F +S V +L+ + ++AT +A E
Sbjct: 178 GAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEE 237
Query: 700 AIANIRTVAAYGIEKRISIQFASELSQ----PNKQALLRGHISGFGYGVSQLLSLCSYAL 755
I N+RTV A+G E ++AS++ K+A R G G+S L + S
Sbjct: 238 RIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFG-ATGLSGNLIVLSV-- 294
Query: 756 GLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRK 815
L+ +L+ G++ M +++KG A G ++ +L R+
Sbjct: 295 -LYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLERE 353
Query: 816 TAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSG 875
+ ++ +G +E +NV F YP RP++ IF++ +L + +G A+VG SGSG
Sbjct: 354 PKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSG 413
Query: 876 KSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGN 935
KSTV+SL++R YDP SGT+ +DG+DIR LN LR KIG V QEP LFS +I ENI YG
Sbjct: 414 KSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGA 473
Query: 936 EDASEI---ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNP 992
+D S + E+ + + ANA FI P+G+ + VG++GV LSGGQKQR+AIARA+LKNP
Sbjct: 474 DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNP 533
Query: 993 SILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEI 1052
ILLLDEATSALD +E L+QEALD+LM+GRT +++AH LSTI+NA+ +AVL QGK+ E
Sbjct: 534 KILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEY 593
Query: 1053 GSHEQLLRKENGIYKQLIRLQ 1073
G HE+LL K NGIY++L+ Q
Sbjct: 594 GKHEELLSKPNGIYRKLMNKQ 614
Score = 288 bits (738), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 171/447 (38%), Positives = 256/447 (57%), Gaps = 16/447 (3%)
Query: 7 LRYLSQFFVGFAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKV 66
LR +Q VG ++ F L L+VVP +++ Y + L++ + + +A ++
Sbjct: 175 LRAGAQASVGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQL 234
Query: 67 AEEIISQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGI---GVGLTYGLLFCAW 123
AEE I VR V AF E IE Y+ + ++ +K A+ GL+ L+ +
Sbjct: 235 AEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARAGFFGATGLSGNLIVLS- 293
Query: 124 ALLLWYAGILVRHGDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXX 183
+L+ G+L+ G+ + ++ + G ++G
Sbjct: 294 --VLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIG---GLSSFYSELMKGLGAGGRLWE 348
Query: 184 XXSHSSERPGDDGITLPK--LAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVG 240
+ P ++G+ L + G +EF V FAYP+RP + +F++ + S+ +G A VG
Sbjct: 349 LLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVG 408
Query: 241 PSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANN 300
PSGSGKST++S++ RLY+P SG I LDGHD++ L WLR ++G VSQEP LF+ SIA N
Sbjct: 409 PSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAEN 468
Query: 301 ILLGKEDAS---MDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARA 357
I G +D S + + A+ ANA +F+ P G+ T VGE G LSGGQKQRIAIARA
Sbjct: 469 IAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARA 528
Query: 358 VLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNG 417
+L+NPKILLLDEATSALDAE+E +VQ AL+++M RT +V+AH LST+++ + + VL G
Sbjct: 529 LLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQG 588
Query: 418 QVVESGTHVDLISK-GGEYAALVNLQS 443
++ E G H +L+SK G Y L+N QS
Sbjct: 589 KITEYGKHEELLSKPNGIYRKLMNKQS 615
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 263 bits (671), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 179/571 (31%), Positives = 294/571 (51%), Gaps = 14/571 (2%)
Query: 509 WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQI----KRVVDQVALIFVGLAV 564
WP G I+AG+ L A T +L+ D + V+ + L+ +GL +
Sbjct: 17 WPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLMI 76
Query: 565 VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 624
+ + Y + + + +R +F ++ + +FD + +TG L+S + D+
Sbjct: 77 LRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFD--KQSTGTLLSRITYDSEQ 134
Query: 625 VRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXX-XXXIGAFVAEQLFLKGFG 683
V S+ + L +V+ A + F++ F SW+ I V + F +
Sbjct: 135 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRF-RSIS 193
Query: 684 GDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYG 743
+ + T+ A + + + V +G ++ + +F ++ Q + S
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDP 253
Query: 744 VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQ 803
+ QL++ + A L+ AS G I F +G
Sbjct: 254 IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 804 ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 863
A +F IL + Q D + + G++E RNV+F YP R ++ N+NLK+ AG
Sbjct: 314 ACQTLFAILDSE---QEKDEGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAG 369
Query: 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 923
+++A+VG+SGSGKST+ SL+ RFYD G +L+DG+D+R L SLR ++ LV Q LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 924 STTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982
+ T+ NI Y E+ S ++ +A + A A FI++M G + +G+ GV LSGGQ+QR+
Sbjct: 430 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRI 489
Query: 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1042
AIARA+L++ IL+LDEATSALDT SE IQ ALD+L + RT++++AHRLSTI AD+I
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIV 549
Query: 1043 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
V++ G + E G+H +LL ++G+Y QL ++Q
Sbjct: 550 VVEDGIIVERGTHSELL-AQHGVYAQLHKMQ 579
Score = 252 bits (644), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 152/428 (35%), Positives = 228/428 (53%), Gaps = 7/428 (1%)
Query: 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 76
F + F WQL+++ + + P++++A + ++S+ + G+ AE+++ +
Sbjct: 157 FIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 77 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH 136
V F G+ + + + QG K A I + + A A +L+ A
Sbjct: 217 VLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276
Query: 137 GDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDG 196
G I V+FS SE+ D+G
Sbjct: 277 DSLTAGT-----ITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG 331
Query: 197 I-TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255
+ + G +EF V F YP R N+N + AGKT A VG SGSGKSTI S++ R
Sbjct: 332 KRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 256 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVI 314
Y+ G IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI + E+ S +++
Sbjct: 392 FYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIE 451
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LDEATSAL
Sbjct: 452 EAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 375 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 434
D ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE GTH +L+++ G
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGV 571
Query: 435 YAALVNLQ 442
YA L +Q
Sbjct: 572 YAQLHKMQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 262 bits (670), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 180/571 (31%), Positives = 291/571 (50%), Gaps = 14/571 (2%)
Query: 509 WPYAVLGSVGAILAGMEAPLFALGITHILTAFYSPHDSQI----KRVVDQVALIFVGLAV 564
WP G I+AG+ L A T +L+ D + V+ + L+ +GL +
Sbjct: 17 WPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKTDRSVLVWMPLVVIGLMI 76
Query: 565 VTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATL 624
+ + Y + + + +R +F ++ + +FD + +TG L+S + D+
Sbjct: 77 LRGITSYVSSYCISWVSGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQ 134
Query: 625 VRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXXXX-XXXIGAFVAEQLFLKGFG 683
V S+ + L +V+ A + F++ F SW+ I V + F +
Sbjct: 135 VASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRF-RNIS 193
Query: 684 GDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYG 743
+ + T+ A + + + V +G ++ + +F ++ Q + S
Sbjct: 194 KNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDP 253
Query: 744 VSQLLSLCSYALGLWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQ 803
+ QL++ + A L+ AS G I F +G
Sbjct: 254 IIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMA 313
Query: 804 ALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAG 863
A +F IL + Q D + + G++E RNV+F YP R D+ N+NLK+ AG
Sbjct: 314 ACQTLFTILDSE---QEKDEGKRVIERATGDVEFRNVTFTYPGR-DVPALRNINLKIPAG 369
Query: 864 RSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALF 923
+++A+VG+SGSGKST+ SL+ RFYD G +L+DG+D+R L SLR ++ LV Q LF
Sbjct: 370 KTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLF 429
Query: 924 STTIYENIKYG-NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRV 982
+ T+ NI Y E S ++ +A + A A FI++M G + +G+ GV LSGGQ+QR+
Sbjct: 430 NDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRI 489
Query: 983 AIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIA 1042
AIARA+L++ IL+LDEATSALDT SE IQ ALD+L + RT++++AHRLSTI AD+I
Sbjct: 490 AIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIV 549
Query: 1043 VLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
V++ G + E G+H LL + G+Y QL ++Q
Sbjct: 550 VVEDGVIVERGTHNDLL-EHRGVYAQLHKMQ 579
Score = 253 bits (646), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 153/428 (35%), Positives = 224/428 (52%), Gaps = 7/428 (1%)
Query: 17 FAVGFTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRA 76
F + F WQL+++ + + P++++A + +S+ + G+ AE+++ +
Sbjct: 157 FIMMFYYSWQLSIILIVLAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKE 216
Query: 77 VYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRH 136
V F G+ + + QG K A I + + A A +L+ A
Sbjct: 217 VLIFGGQEVETKRFDKVSNRMRLQGMKMVSASSISDPIIQLIASLALAFVLYAASFPSVM 276
Query: 137 GDTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDG 196
G I V+FS SE+ D+G
Sbjct: 277 DSLTAGT-----ITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEG 331
Query: 197 I-TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQR 255
+ + G +EF V F YP R N+N + AGKT A VG SGSGKSTI S++ R
Sbjct: 332 KRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITR 391
Query: 256 LYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGK-EDASMDRVI 314
Y+ G+IL+DGHDL+ L LR Q+ LVSQ LF ++ANNI + E S +++
Sbjct: 392 FYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIE 451
Query: 315 EAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL 374
EAA+ A A F+ + +G T +GE G LSGGQ+QRIAIARA+LR+ IL+LDEATSAL
Sbjct: 452 EAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSAL 511
Query: 375 DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE 434
D ESE +Q AL+++ NRT++V+AHRLST+ D I+V+++G +VE GTH DL+ G
Sbjct: 512 DTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRGV 571
Query: 435 YAALVNLQ 442
YA L +Q
Sbjct: 572 YAQLHKMQ 579
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 261 bits (666), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 124/240 (51%), Positives = 174/240 (72%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G+I+ V F Y + +++N S++ G+T AFVG SG GKST+I+++ R Y+ TSG+
Sbjct: 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
IL+DGH++K LR Q+GLV Q+ LF+ ++ NILLG+ A+ + V+EAAK ANAH
Sbjct: 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAH 457
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
F+ LP GY T+VGE G +LSGGQKQR++IAR L NP IL+LDEATSALD ESE I+Q
Sbjct: 458 DFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
AL+ + +RTT++VAHRLST+ D I+V++NG +VE+GTH +LI+K G Y L ++Q+
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
Score = 251 bits (642), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 130/246 (52%), Positives = 179/246 (72%), Gaps = 3/246 (1%)
Query: 830 EIK-GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYD 888
EIK G I++ +VSF+Y + I +++NL + G ++A VG SG GKST+I+L+ RFYD
Sbjct: 334 EIKQGRIDIDHVSFQYN-DNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392
Query: 889 PISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK 948
SG +LIDG++I+ SLR +IGLVQQ+ LFS T+ ENI G A++ E+++A K
Sbjct: 393 VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAK 452
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
ANAH FI +P+GY + VG+RGV+LSGGQKQR++IAR L NP IL+LDEATSALD S
Sbjct: 453 MANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
Query: 1009 ENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQ 1068
E++IQEALD L + RTT++VAHRLSTI +ADKI V++ G + E G+H +L+ K+ G Y+
Sbjct: 513 ESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ-GAYEH 571
Query: 1069 LIRLQQ 1074
L +Q
Sbjct: 572 LYSIQN 577
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 598
Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 124/259 (47%), Positives = 178/259 (68%), Gaps = 11/259 (4%)
Query: 819 QPDDPASKEVTEIKGNIELRNVSFKY----PVRPDITIFENLNLKVSAGRSLAVVGQSGS 874
+ DDP + E+ E++G IE +NV F Y PV DIT + G+ +A+VG +GS
Sbjct: 339 EKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDIT------FHIKPGQKVALVGPTGS 392
Query: 875 GKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG 934
GK+T+++L+MRFYD G +L+DG DIR + SLR IG+V Q+ LFSTT+ EN+KYG
Sbjct: 393 GKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYG 452
Query: 935 NEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSI 994
N A++ E+ +A K ++ FI +PEGY++ + D G LS GQ+Q +AI RA L NP I
Sbjct: 453 NPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512
Query: 995 LLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
L+LDEATS +DT +E IQ A+ KLMEG+T+I++AHRL+TI+NAD I VL+ G++ E+G
Sbjct: 513 LILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGK 572
Query: 1055 HEQLLRKENGIYKQLIRLQ 1073
H++L++K G Y +L Q
Sbjct: 573 HDELIQKR-GFYYELFTSQ 590
Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 134/425 (31%), Positives = 227/425 (53%), Gaps = 22/425 (5%)
Query: 27 LTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAFVGEAKA 86
L+L+TL++VPL + + + + G+ + EE IS + + F E K
Sbjct: 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKE 238
Query: 87 IESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHGDTNGG---- 142
+E + + K G K+ + G+ L + +AL+ + G L G
Sbjct: 239 MEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIAT 298
Query: 143 -----KAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDGI 197
+ FT +N + + F + Q E+ D +
Sbjct: 299 FIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL------------EEEKDDPDAV 346
Query: 198 TLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLY 257
L ++ G+IEF V F+Y + V +++ F + G+ A VGP+GSGK+TI++++ R Y
Sbjct: 347 ELREVRGEIEFKNVWFSY-DKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFY 405
Query: 258 EPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAA 317
+ G+IL+DG D++ ++ LR +G+V Q+ LF+T++ N+ G A+ + + EAA
Sbjct: 406 DVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAA 465
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K ++ F++ LP+GY+T + + G LS GQ+Q +AI RA L NPKIL+LDEATS +D +
Sbjct: 466 KLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTK 525
Query: 378 SELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
+E +Q A+ K+M +T+I++AHRL+T+++ D I+VL++G++VE G H +LI K G Y
Sbjct: 526 TEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYE 585
Query: 438 LVNLQ 442
L Q
Sbjct: 586 LFTSQ 590
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 239 bits (610), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 147/430 (34%), Positives = 232/430 (53%), Gaps = 13/430 (3%)
Query: 21 FTSVWQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEIISQVRAVYAF 80
F + WQL+L+ + V P++A A + +S + A G AE+++ + V ++
Sbjct: 161 FWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSY 220
Query: 81 VG---EAKAIESYSHSLKEALKQGKKSGVAKGIGVGLTYGLLFCAWALLLWYAGILVRHG 137
G E K + S+S+++ Q K A+ I + + A +L+ A +
Sbjct: 221 GGQEVERKRFDKVSNSMRQ---QTMKLVSAQSIADPVIQMIASLALFAVLFLASVDSIRA 277
Query: 138 DTNGGKAFTTIINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSHSSERPGDDG- 196
+ G FT + + +F + +ER D+G
Sbjct: 278 ELTPG-TFTVVFSAMFG--LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETER--DNGK 332
Query: 197 ITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRL 256
++ G+++ +V F Y + +++FS+ GKT A VG SGSGKSTI ++ R
Sbjct: 333 YEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRF 392
Query: 257 YEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIE 315
Y+ SG I LDGHD++ +L LR LVSQ LF +IANNI E + + +++ +
Sbjct: 393 YDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 316 AAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
AA+ A+A F+E +P G T +GE GT LSGGQ+QR+AIARA+LR+ +L+LDEATSALD
Sbjct: 453 AARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALD 512
Query: 376 AESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEY 435
ESE +Q AL+++ N+T +V+AHRLST+ D I+V+ G+++E G H DL+++ G Y
Sbjct: 513 TESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAY 572
Query: 436 AALVNLQSSE 445
A L +Q E
Sbjct: 573 AQLHRIQFGE 582
Score = 226 bits (576), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 172/594 (28%), Positives = 294/594 (49%), Gaps = 27/594 (4%)
Query: 491 SFAPSPSIWELLKLNAAEWPYAVLGSVGAILAGMEAPLFALGITHILTAF-------YSP 543
S S W+ K W Y L G +++ + + A T++++ +
Sbjct: 2 SLHSDESNWQTFK---RLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGN 58
Query: 544 HDSQIKRVVDQVALIFVGLAVVTIPVYLLQHYFYTLMGEHLTARVRLSMFSAILSNEIGW 603
+S R++ + +GL V Y + + ++ ++R +F+ + + +
Sbjct: 59 AESNFLRIL---PFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRF 115
Query: 604 FDLDENNTGLLISTLAADATLVRSALADRLSIIVQNVALTVTAFVIAFILSWRXXXXXXX 663
FD + +TG L+S + D+ V A + L IV+ A + + F SW+
Sbjct: 116 FD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIV 173
Query: 664 XXXXXIGA--FVAEQLFLKGFGGDYNRAYSRATSVAREAIANIRTVAAYGIEKRISIQFA 721
A FV+++ + + A TS A + + + V +YG ++ +F
Sbjct: 174 VAPVVAFAISFVSKRF--RKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFD 231
Query: 722 SELSQPNKQALLRGHISGFGYGVSQLL-SLCSYALGLWYASVLIKQKGSNFGDIMKSFMV 780
+ +Q + V Q++ SL +A+ L+ ASV + G F
Sbjct: 232 KVSNSMRQQTMKLVSAQSIADPVIQMIASLALFAV-LFLASVDSIRAELTPGTFTVVFSA 290
Query: 781 XXXXXXXXXXXXXXXPDIVKGSQALGPVFGILYRKTAIQPDDPASKEVTEIKGNIELRNV 840
+ +G A +FG++ +T D E + G +++++V
Sbjct: 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET---ERDNGKYEAERVNGEVDVKDV 347
Query: 841 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900
+F Y + + +++ + G+++A+VG+SGSGKST+ +L RFYD SG++ +DG+D
Sbjct: 348 TFTYQGKEKPAL-SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHD 406
Query: 901 IRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFISRM 959
+R L +LRR LV Q LF+ TI NI Y E + + ++ +A + A+A FI M
Sbjct: 407 VRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENM 466
Query: 960 PEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL 1019
P+G + +G+ G LSGGQ+QRVAIARA+L++ +L+LDEATSALDT SE IQ ALD+L
Sbjct: 467 PQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL 526
Query: 1020 MEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+ +T +++AHRLSTI AD+I V+ +G++ E G H LL ++G Y QL R+Q
Sbjct: 527 QKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLL-AQDGAYAQLHRIQ 579
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 236 bits (603), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/282 (46%), Positives = 182/282 (64%), Gaps = 11/282 (3%)
Query: 808 VFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLA 867
+F +L +T ++ D P + + KG IE NV F Y + ++++ V G++LA
Sbjct: 28 MFDLLKEETEVK-DLPGAGPLRFQKGRIEFENVHFSYADGRET--LQDVSFTVMPGQTLA 84
Query: 868 VVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTI 927
+VG SG+GKST++ L+ RFYD SG + IDG DI + SLR IG+V Q+ LF+ TI
Sbjct: 85 LVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTI 144
Query: 928 YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARA 987
+NI+YG A E+ A +AA H I PEGY++ VG+RG++LSGG+KQRVAIAR
Sbjct: 145 ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIART 204
Query: 988 ILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQG 1047
ILK P I+LLDEATSALDT++E IQ +L K+ RTTI+VAHRLST+ NAD+I V++ G
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 1048 KVAEIGSHEQLLRKENGIYKQLIRLQQ-------DKNPEAME 1082
+ E G HE LL + G+Y + +LQQ D P+ ME
Sbjct: 265 CIVERGRHEALLSR-GGVYADMWQLQQGQEETSEDTKPQTME 305
Score = 230 bits (586), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/243 (48%), Positives = 166/243 (68%), Gaps = 1/243 (0%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
G+IEF V F+Y + ++++F+V G+T A VGPSG+GKSTI+ ++ R Y+ +SG
Sbjct: 52 GRIEFENVHFSY-ADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGC 110
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAH 323
I +DG D+ + LR +G+V Q+ LF +IA+NI G+ A D V AA+AA H
Sbjct: 111 IRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170
Query: 324 SFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQ 383
+ P+GY+TQVGE G +LSGG+KQR+AIAR +L+ P I+LLDEATSALD +E +Q
Sbjct: 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQ 230
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
+L K+ +NRTTIVVAHRLSTV + D I+V+K+G +VE G H L+S+GG YA + LQ
Sbjct: 231 ASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADMWQLQQ 290
Query: 444 SEH 446
+
Sbjct: 291 GQE 293
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 232 bits (591), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
Score = 229 bits (584), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 60
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1073 QQD 1075
Q D
Sbjct: 241 QSD 243
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 182 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 179 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1073 QQD 1075
Q D
Sbjct: 239 QSD 241
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 116/240 (48%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
Score = 229 bits (583), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 114/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1073 QQD 1075
Q D
Sbjct: 245 QSD 247
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 231 bits (588), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG +GSGKST+ ++QR Y P +G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 124 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 183
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 184 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 243
Score = 228 bits (581), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG++GSGKST+ L+ RFY P +G
Sbjct: 3 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENG 60
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 61 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 120
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 121 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 180
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 181 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 240
Query: 1073 QQD 1075
Q D
Sbjct: 241 QSD 243
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 230 bits (587), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 159/240 (66%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ D+ATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRN 187
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++AHRLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 168/243 (69%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ D+ATSALD SE++I
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVI 184
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++AHRLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 185 MRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1073 QQD 1075
Q D
Sbjct: 245 QSD 247
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its
Inward- Facing Conformation
Length = 587
Score = 229 bits (583), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 161/493 (32%), Positives = 252/493 (51%), Gaps = 22/493 (4%)
Query: 576 FYTLMGEHLTARVRLSMFSAILSNEIGWFDLDENNTGLLISTLAADATLVRSALADRLSI 635
F + ++ A +R +F +LS I +++ +T LI+ L D T +++ + L I
Sbjct: 86 FASYASQNFGADLRRDLFRKVLSFSIS--NVNRFHTSSLITRLTNDVTQLQNLVMMLLRI 143
Query: 636 IVQNVALTVTAFVIAFILSWRXXXXXXXXXXXXIGAFVAEQLFLKGFGGDYNRAYSRATS 695
+V+ L V V+A ++ + + FV +L G R +T
Sbjct: 144 VVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFV----WLTKKGNPLFRKIQESTD 199
Query: 696 ----VAREAIANIRTVAAYGIEKRISIQFASELSQPNKQALLRGHISGFGYGVSQL-LSL 750
V RE + +R V A+ E ++ +E + ++L R IS F V L L +
Sbjct: 200 EVNRVVRENLLGVRVVRAFRRE-----EYENENFRKANESLRRSIISAFSLIVFALPLFI 254
Query: 751 CSYALG----LWYASVLIKQKGSNFGDIMKSFMVXXXXXXXXXXXXXXXPDIVKGSQALG 806
+G LW+ VL++ G IM IV+ S +
Sbjct: 255 FIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAK 314
Query: 807 PVFGILYRKTAIQPDDPASKEVTEIKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSL 866
V +L K AI+ D A + ++G++ NV F+Y D + +N V G +
Sbjct: 315 RVLEVLNEKPAIEEADNALA-LPNVEGSVSFENVEFRYFENTD-PVLSGVNFSVKPGSLV 372
Query: 867 AVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTT 926
AV+G++GSGKST+++L+ R DP G V +D D+RT+ L+ LR I V QE LFS T
Sbjct: 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGT 432
Query: 927 IYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIAR 986
I EN+K+G EDA++ E+++A K A H FI +PEGY S V G SGGQKQR++IAR
Sbjct: 433 IKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIAR 492
Query: 987 AILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQ 1046
A++K P +L+LD+ TS++D +E I + L + +G TT ++ ++ T ADKI VL +
Sbjct: 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHE 552
Query: 1047 GKVAEIGSHEQLL 1059
GKVA G+H++LL
Sbjct: 553 GKVAGFGTHKELL 565
Score = 204 bits (518), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 132/432 (30%), Positives = 223/432 (51%), Gaps = 19/432 (4%)
Query: 13 FFVGFAVGFTSV-WQLTLLTLAVVPLIAVAGGAYTITMSTLSEKGEAAYGEAGKVAEEII 71
FVG V S+ +L+ + + ++P I + T + L K + + E +V E +
Sbjct: 150 LFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENL 209
Query: 72 SQVRAVYAFVGEAKAIESYSHSLKEALKQGKKSGVAKGI-GVGLTYGLLFCAWALLLWYA 130
VR V AF E E++ + E+L++ S + + + L ++ +LW+
Sbjct: 210 LGVRVVRAFRREEYENENFRKA-NESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFG 268
Query: 131 GILVRHGDTNGGK--AFTT-IINVIFSGFALGQXXXXXXXXXXXXXXXXXXXXXXXXXSH 187
G+LVR+ G A+T ++ ++FS +G
Sbjct: 269 GVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVL-------- 320
Query: 188 SSERPG----DDGITLPKLAGQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSG 243
+E+P D+ + LP + G + F V F Y V +NFSV G A +G +G
Sbjct: 321 -NEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETG 379
Query: 244 SGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 303
SGKST+++++ RL +P G++ +D D+++++LK LR + V QE LF+ +I N+
Sbjct: 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439
Query: 304 GKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK 363
G+EDA+ D ++EAAK A H F+ LP+GY ++V GG SGGQKQR++IARA+++ PK
Sbjct: 440 GREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499
Query: 364 ILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
+L+LD+ TS++D +E + L++ TT ++ ++ T D I+VL G+V G
Sbjct: 500 VLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559
Query: 424 THVDLISKGGEY 435
TH +L+ Y
Sbjct: 560 THKELLEHCKPY 571
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 122 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 181
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++A RLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 182 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 241
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 1 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 58
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 118
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 119 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 178
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++A RLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 179 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 238
Query: 1073 QQD 1075
Q D
Sbjct: 239 QSD 241
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 158/240 (65%), Gaps = 1/240 (0%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
I F + F Y ++ +N+N S+ G+ VG SGSGKST+ ++QR Y P +G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSF 325
+DGHDL WLR Q+G+V Q+ L SI +NI L S+++VI AAK A AH F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 326 VEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRA 385
+ L +GY T VGE G LSGGQ+QRIAIARA++ NPKIL+ DEATSALD ESE ++ R
Sbjct: 128 ISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRN 187
Query: 386 LEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGE-YAALVNLQSS 444
+ KI RT I++A RLSTV++ D I+V++ G++VE G H +L+S+ Y+ L LQS
Sbjct: 188 MHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQSD 247
Score = 225 bits (573), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 113/243 (46%), Positives = 167/243 (68%), Gaps = 3/243 (1%)
Query: 834 NIELRNVSFKYPVRPD-ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
+I RN+ F+Y +PD I +N+NL + G + +VG+SGSGKST+ L+ RFY P +G
Sbjct: 7 DITFRNIRFRY--KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
VLIDG+D+ + LRR++G+V Q+ L + +I +NI N S +++ A K A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
H FIS + EGY + VG++G LSGGQ+QR+AIARA++ NP IL+ DEATSALD SE++I
Sbjct: 125 HDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVI 184
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
+ K+ +GRT I++A RLST++NAD+I V+++GK+ E G H++LL + +Y L +L
Sbjct: 185 MRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244
Query: 1073 QQD 1075
Q D
Sbjct: 245 QSD 247
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 222 bits (566), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 164/244 (67%), Gaps = 2/244 (0%)
Query: 201 KLAGQIEFSEVCFAYPSRP-HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
K IEFS+V F+YP + H +++NF + +G T A VG +GSGKSTI ++ R Y+
Sbjct: 13 KFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA 72
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKA 319
G I + G ++ +R +G+V Q+ LF +I NIL GK DA+ + VI+A K+
Sbjct: 73 -EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKS 131
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
A + F+E LP + T VG G +LSGG++QRIAIAR +L++PKI++ DEATS+LD+++E
Sbjct: 132 AQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 380 LIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALV 439
+ Q+A+E + NRT I++AHRLST+ ++I++L G++VE GTH DL+ GEYA +
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251
Query: 440 NLQS 443
N+QS
Sbjct: 252 NMQS 255
Score = 214 bits (544), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 168/244 (68%), Gaps = 2/244 (0%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
NIE +V+F YP + + +++N + +G + A+VG +GSGKST+ L+ RFYD G
Sbjct: 17 NIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
+ I G ++ N S+R IG+V Q+ LF+ TI NI YG DA++ E++KATK+A +
Sbjct: 76 IKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLY 135
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
FI +P+ + + VG++G++LSGG++QR+AIAR +LK+P I++ DEATS+LD+ +E L Q
Sbjct: 136 DFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQ 195
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQ 1073
+A++ L + RT I++AHRLSTI +A+ I +L +GK+ E G+H+ LL K NG Y ++ +Q
Sbjct: 196 KAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLL-KLNGEYAEMWNMQ 254
Query: 1074 QDKN 1077
N
Sbjct: 255 SGGN 258
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 217 bits (552), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 108/243 (44%), Positives = 157/243 (64%), Gaps = 4/243 (1%)
Query: 201 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 318
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD+ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGN 191
Query: 379 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436
+L VQR L + ++RT +++ H+LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 437 ALV 439
++V
Sbjct: 252 SMV 254
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/243 (39%), Positives = 146/243 (60%), Gaps = 4/243 (1%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
+KG ++ ++VSF YP P++ + + L + G+ A+VG +GSGKSTV +L+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 949
G VL+DG + + L ++ V QEP LF + ENI YG +E + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ AH FIS P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDAGNQ 192
Query: 1010 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
+Q L + E RT +++ H+LS A I L++G V E G+H QL+ + G Y+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1068 QLI 1070
++
Sbjct: 252 SMV 254
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 160/243 (65%), Gaps = 4/243 (1%)
Query: 202 LAGQIEFSEVCFAYPSRPH-MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPT 260
L G ++F +V FAYP+RP +V + L F++ G+ A VGP+GSGKST+ +++Q LY+PT
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 261 SGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAKA 319
G++LLDG L + ++L Q+ V QEP +F S+ NI G + +M+ + AA
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
+ AHSF+ GLP GY T+V E G+QLSGGQ+Q +A+ARA++R P +L+LD+ATSALDA S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 380 LIVQRALEKIMS--NRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAA 437
L V++ L + +R+ +++ LS V D I+ L+ G + E GTH L+ K G Y A
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKGCYWA 250
Query: 438 LVN 440
+V
Sbjct: 251 MVQ 253
Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 95/248 (38%), Positives = 152/248 (61%), Gaps = 4/248 (1%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
++G ++ ++VSF YP RPD+ + + L + G A+VG +GSGKSTV +L+ Y P
Sbjct: 11 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 70
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYG-NEDASEIELMKATKA 949
G +L+DG + R L R++ V QEP +F ++ ENI YG + + E+ A
Sbjct: 71 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 130
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ AH FIS +P+GY + V + G QLSGGQ+Q VA+ARA+++ P +L+LD+ATSALD S+
Sbjct: 131 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 190
Query: 1010 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
+++ L + E R+ +++ LS + AD I L+ G + E G+H+QL+ K+ G Y
Sbjct: 191 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 249
Query: 1068 QLIRLQQD 1075
+++ D
Sbjct: 250 AMVQAPAD 257
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 156/233 (66%), Gaps = 2/233 (0%)
Query: 211 VCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHD 270
V FAY + +++F AF GPSG GKSTI S+++R Y+PT+G+I +DG
Sbjct: 7 VDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQP 65
Query: 271 LKSLQLKWLREQMGLVSQEPALFATSIANNILLGKE-DASMDRVIEAAKAANAHSFVEGL 329
+ ++ L+ R Q+G VSQ+ A+ A +I N+ G E D + + + + A A SFVE +
Sbjct: 66 IDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENM 125
Query: 330 PDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI 389
PD T+VGE G ++SGGQ+QR+AIARA LRNPKIL+LDEAT++LD+ESE +VQ+AL+ +
Sbjct: 126 PDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL 185
Query: 390 MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQ 442
M RTT+V+AHRLST+ D D I ++ GQ+ SG H +L++ YA V+ Q
Sbjct: 186 MKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
Score = 201 bits (511), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 151/223 (67%), Gaps = 3/223 (1%)
Query: 838 RNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLID 897
R+V F Y I +++ + +A G SG GKST+ SL+ RFY P +G + ID
Sbjct: 5 RHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITID 62
Query: 898 GYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNE-DASEIELMKATKAANAHGFI 956
G I ++L + R +IG V Q+ A+ + TI EN+ YG E D ++ +L + A A F+
Sbjct: 63 GQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFV 122
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
MP+ + VG+RGV++SGGQ+QR+AIARA L+NP IL+LDEAT++LD+ SE+++Q+AL
Sbjct: 123 ENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKAL 182
Query: 1017 DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLL 1059
D LM+GRTT+++AHRLSTI +ADKI +++G++ G H +L+
Sbjct: 183 DSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELV 225
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 213 bits (541), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 155/243 (63%), Gaps = 4/243 (1%)
Query: 201 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 318
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ AH F+ G P GY T+VGE G QLSGGQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 379 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436
+L VQR L + ++RT +++ +LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 437 ALV 439
++V
Sbjct: 252 SMV 254
Score = 177 bits (449), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 94/243 (38%), Positives = 144/243 (59%), Gaps = 4/243 (1%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
+KG ++ ++VSF YP P++ + + L + G+ A+VG +GSGKSTV +L+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 949
G VL+DG + + L ++ V QEP LF + ENI YG +E + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ AH FIS P+GY + VG+ G QLSGGQ+Q VA+ARA+++ P +L+LD ATSALD ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1010 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
+Q L + E RT +++ +LS A I L++G V E G+H QL+ + G Y+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1068 QLI 1070
++
Sbjct: 252 SMV 254
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 208 bits (529), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 154/243 (63%), Gaps = 4/243 (1%)
Query: 201 KLAGQIEFSEVCFAYPSRPHM-VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP 259
+ G ++F +V FAYP+ P++ V + L F++ GK A VGP+GSGKST+ +++Q LY+P
Sbjct: 12 NMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQP 71
Query: 260 TSGKILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLG-KEDASMDRVIEAAK 318
T GK+LLDG L +L Q+ V QEP LF S NI G +M+ + A
Sbjct: 72 TGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAM 131
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
+ AH F+ G P GY T+VGE G QL+ GQ+Q +A+ARA++R P++L+LD ATSALDA +
Sbjct: 132 ESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGN 191
Query: 379 ELIVQRALEKI--MSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYA 436
+L VQR L + ++RT +++ +LS I+ LK G V E GTH+ L+ +GG Y
Sbjct: 192 QLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGCYR 251
Query: 437 ALV 439
++V
Sbjct: 252 SMV 254
Score = 172 bits (437), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 143/243 (58%), Gaps = 4/243 (1%)
Query: 831 IKGNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
+KG ++ ++VSF YP P++ + + L + G+ A+VG +GSGKSTV +L+ Y P
Sbjct: 13 MKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPT 72
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATK-A 949
G VL+DG + + L ++ V QEP LF + ENI YG +E + A
Sbjct: 73 GGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAME 132
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
+ AH FIS P+GY + VG+ G QL+ GQ+Q VA+ARA+++ P +L+LD ATSALD ++
Sbjct: 133 SGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDAGNQ 192
Query: 1010 NLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYK 1067
+Q L + E RT +++ +LS A I L++G V E G+H QL+ + G Y+
Sbjct: 193 LRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYR 251
Query: 1068 QLI 1070
++
Sbjct: 252 SMV 254
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 119 bits (297), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/233 (35%), Positives = 129/233 (55%), Gaps = 18/233 (7%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I+L N+ K+ + T N+NLK+ G +A++G SGSGKST++ + Y P SG +
Sbjct: 4 IKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNE--DASEIELMKATKAAN 951
D D+ L + R +GLV Q AL+ T+Y+NI + E A E+ K +
Sbjct: 61 YFDEKDVTELPPKD--RNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVA 118
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
I ++ Y QLSGGQ+QRVAIARA++K P +LLLDE S LD
Sbjct: 119 KMLHIDKLLNRYPW-------QLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLE 171
Query: 1012 IQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
++ L +L + G TT+ V H + + AD+IAV+++G++ ++G+ +++ K
Sbjct: 172 VRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYK 224
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 75/210 (35%), Positives = 111/210 (52%), Gaps = 23/210 (10%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
N+N + G+ A +GPSGSGKST++ + +Y+PTSGKI D D+ L K +G
Sbjct: 21 NINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVG 78
Query: 285 LVSQEPALFA-TSIANNILLGKEDASMDR------VIEAAKAANAHSFVEGLPDGYQTQV 337
LV Q AL+ ++ NI E R V E AK + + P
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYP------- 131
Query: 338 GEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TT 395
QLSGGQ+QR+AIARA+++ P++LLLDE S LDA L V+ L+++ TT
Sbjct: 132 ----WQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITT 187
Query: 396 IVVAH-RLSTVRDVDTIMVLKNGQVVESGT 424
+ V H + + D I V++ G++++ GT
Sbjct: 188 VYVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 118 bits (296), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 84/247 (34%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 11 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 70
Query: 273 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 328
+L +L R Q+G++ Q L ++ ++ N+ L E + + + S V G
Sbjct: 71 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 129
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L D + + + LSGGQKQR+AIARA+ NPK+LL DEATSALD + + L+
Sbjct: 130 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD 185
Query: 389 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
I NR T +++ H + V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 186 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 243
Query: 444 SEHLSNP 450
+ HL P
Sbjct: 244 TLHLDIP 250
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 88/245 (35%), Positives = 129/245 (52%), Gaps = 39/245 (15%)
Query: 835 IELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
I+L N++ F R I N++L V AG+ V+G SG+GKST+I V P G
Sbjct: 2 IKLSNITKVFHQGTR-TIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG 60
Query: 893 TVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI--- 941
+VL+DG ++ TL+ L RR+IG++ Q L S+ T++ N+ + N E+
Sbjct: 61 SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRR 120
Query: 942 --ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDE 999
EL+ + H + Y S+ LSGGQKQRVAIARA+ NP +LL DE
Sbjct: 121 VTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLLCDE 166
Query: 1000 ATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK------VA 1050
ATSALD A+ I E L + G T +++ H + + R D +AV+ G+ V+
Sbjct: 167 ATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226
Query: 1051 EIGSH 1055
E+ SH
Sbjct: 227 EVFSH 231
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 117 bits (292), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 132/247 (53%), Gaps = 16/247 (6%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 273 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 328
+L +L R Q+G++ Q L ++ ++ N+ L E + + + S V G
Sbjct: 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L D + + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + + L+
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 389 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
I NR T +++ H + V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 209 I--NRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 444 SEHLSNP 450
+ HL P
Sbjct: 267 TLHLDIP 273
Score = 111 bits (278), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 130/248 (52%), Gaps = 39/248 (15%)
Query: 832 KGNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
K I+L N++ F R I N++L V AG+ V+G SG+GKST+I V P
Sbjct: 22 KHMIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 890 ISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI 941
G+VL+DG ++ TL+ L RR+IG++ Q L S+ T++ N+ + N E+
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 942 -----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
EL+ + H + Y S+ LSGGQKQRVAIARA+ NP +LL
Sbjct: 141 KRRVTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLL 186
Query: 997 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK----- 1048
D+ATSALD A+ I E L + G T +++ H + + R D +AV+ G+
Sbjct: 187 CDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 246
Query: 1049 -VAEIGSH 1055
V+E+ SH
Sbjct: 247 TVSEVFSH 254
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/241 (30%), Positives = 127/241 (52%), Gaps = 19/241 (7%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+I +RN +F + R D + + G +AVVGQ G GKS+++S ++ D + G
Sbjct: 3 SITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAH 953
V I G + V Q+ + + ++ ENI +G + E +A
Sbjct: 62 VAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALL 107
Query: 954 GFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQ 1013
+ +P G ++ +G++GV LSGGQKQRV++ARA+ N I L D+ SA+D I
Sbjct: 108 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
Query: 1014 EAL---DKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
E + +++ +T I+V H +S + D I V+ GK++E+GS+++LL ++ G + + +
Sbjct: 168 ENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEFL 226
Query: 1071 R 1071
R
Sbjct: 227 R 227
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/237 (29%), Positives = 118/237 (49%), Gaps = 21/237 (8%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
F + + FS+ G A VG G GKS+++S + + G + + G
Sbjct: 11 FTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKGSVAY 70
Query: 273 SLQLKWLREQMGLVSQEPALFATSIANNILLGK--EDASMDRVIEAAKAANAHSFVEGLP 330
Q W++ S+ NIL G E+ VI+A +E LP
Sbjct: 71 VPQQAWIQND-------------SLRENILFGCQLEEPYYRSVIQACALLPD---LEILP 114
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRAL--E 387
G +T++GE G LSGGQKQR+++ARAV N I L D+ SA+DA + I + + +
Sbjct: 115 SGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPK 174
Query: 388 KIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQSS 444
++ N+T I+V H +S + VD I+V+ G++ E G++ +L+++ G +A + +S
Sbjct: 175 GMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFAEFLRTYAS 231
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 114 bits (284), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 83/247 (33%), Positives = 130/247 (52%), Gaps = 16/247 (6%)
Query: 213 FAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLK 272
F +R N++ V AG+ + +G SG+GKST+I V L PT G +L+DG +L
Sbjct: 34 FHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93
Query: 273 SL---QLKWLREQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEG 328
+L +L R Q+G + Q L ++ ++ N+ L E + + + S V G
Sbjct: 94 TLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV-G 152
Query: 329 LPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEK 388
L D + + + LSGGQKQR+AIARA+ NPK+LL D+ATSALD + + L+
Sbjct: 153 LGDKHDSY----PSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD 208
Query: 389 IMSNR----TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGGEYAALVNLQS 443
I NR T +++ H V+ + D + V+ NG+++E T ++ S A +QS
Sbjct: 209 I--NRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQS 266
Query: 444 SEHLSNP 450
+ HL P
Sbjct: 267 TLHLDIP 273
Score = 109 bits (272), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 88/248 (35%), Positives = 128/248 (51%), Gaps = 39/248 (15%)
Query: 832 KGNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP 889
K I+L N++ F R I N++L V AG+ V+G SG+GKST+I V P
Sbjct: 22 KHXIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERP 80
Query: 890 ISGTVLIDGYDIRTLN---LRSLRRKIGLVQQEPALFST-TIYENI----KYGNEDASEI 941
G+VL+DG ++ TL+ L RR+IG + Q L S+ T++ N+ + N E+
Sbjct: 81 TEGSVLVDGQELTTLSESELTKARRQIGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEV 140
Query: 942 -----ELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILL 996
EL+ + H + Y S+ LSGGQKQRVAIARA+ NP +LL
Sbjct: 141 KRRVTELLSLVGLGDKH-------DSYPSN-------LSGGQKQRVAIARALASNPKVLL 186
Query: 997 LDEATSALDTASENLIQEALDKLME--GRTTIMVAHRLSTI-RNADKIAVLQQGK----- 1048
D+ATSALD A+ I E L + G T +++ H + R D +AV+ G+
Sbjct: 187 CDQATSALDPATTRSILELLKDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQD 246
Query: 1049 -VAEIGSH 1055
V+E+ SH
Sbjct: 247 TVSEVFSH 254
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 110 bits (275), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 118/214 (55%), Gaps = 16/214 (7%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
+NL+LKV +G ++G +G+GK+ + L+ F+ P SG +L+DG D+ +L +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDV--TDLSPEKHD 73
Query: 913 IGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
I V Q +LF + +N+++G M+ K + + + H+ DR
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFG---------MRMKKIKDPKRVLDTARDLKIEHLLDRN 124
Query: 972 -VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGR--TTIMV 1028
+ LSGG++QRVA+ARA++ NP ILLLDE SALD ++ +E L L + T + +
Sbjct: 125 PLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 1029 AHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRK 1061
H + R AD+IAV+ GK+ ++G E++ K
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 123/230 (53%), Gaps = 22/230 (9%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
+NL+ V++G+ F +GP+G+GK+ + ++ + P SG+ILLDG D+ L + +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHD 73
Query: 283 MGLVSQEPALFA-TSIANNILLG---KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ V Q +LF ++ N+ G K+ RV++ A+ ++ P
Sbjct: 74 IAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNP-------- 125
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKI-MSNRTTIV 397
LSGG++QR+A+ARA++ NPKILLLDE SALD ++ + L + N+ T++
Sbjct: 126 ---LTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVL 182
Query: 398 -VAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKG--GEYAALVNLQS 443
+ H + R + D I V+ +G++++ G ++ K G A+ V ++
Sbjct: 183 HITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVGFEN 232
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 108 bits (271), Expect = 1e-23, Method: Composition-based stats.
Identities = 79/229 (34%), Positives = 125/229 (54%), Gaps = 21/229 (9%)
Query: 835 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L+NV+ Y + +I +N+NL + G ++++G SGSGKST+++++ P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 894 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 942
V ID L+ L +RR KIG V Q+ L T EN+ KY + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + ++ + E + +H + QLSGGQ+QRVAIARA+ NP I+L D+ T
Sbjct: 122 RKRALECLK----MAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTG 174
Query: 1003 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
ALD+ + I + L KL E G+T ++V H ++ R ++I L+ G+V
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 100 bits (248), Expect = 6e-21, Method: Composition-based stats.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 28/214 (13%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG---HDLKSLQL-KW 278
+N+N ++ G+ + +GPSGSGKST+++++ L +PT G++ +D +DL +L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 279 LREQMGLVSQE----PALFATSIANNILLGKEDASMD------RVIEAAKAANAHS-FVE 327
R+++G V Q+ P L A L+ K +M R +E K A F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
P+ QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++ + + L+
Sbjct: 141 HKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLK 189
Query: 388 KIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 419
K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 190 KLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 108 bits (269), Expect = 2e-23, Method: Composition-based stats.
Identities = 80/229 (34%), Positives = 121/229 (52%), Gaps = 21/229 (9%)
Query: 835 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
I+L+NV+ Y +I +N+NL + G +++ G SGSGKST ++++ P G
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 894 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 942
V ID L+ L +RR KIG V Q+ L T EN+ KY + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + + + E + +H + QLSGGQ+QRVAIARA+ NP I+L DE T
Sbjct: 122 RKRALECLKX----AELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADEPTG 174
Query: 1003 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKV 1049
ALD+ + I + L KL E G+T ++V H ++ R ++I L+ G+V
Sbjct: 175 ALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 97.1 bits (240), Expect = 5e-20, Method: Composition-based stats.
Identities = 74/233 (31%), Positives = 121/233 (51%), Gaps = 30/233 (12%)
Query: 206 IEFSEVCFAYPSRPHMVF--ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
I+ V Y +++ +N+N ++ G+ + GPSGSGKST ++++ L +PT G+
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 264 ILLDG---HDLKSLQL-KWLREQMGLVSQE----PALFATSIANNILLGKEDASMD---- 311
+ +D +DL +L K R+++G V Q+ P L A L+ K +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEER 121
Query: 312 --RVIEAAKAANAHS-FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLD 368
R +E K A F P+ QLSGGQ+QR+AIARA+ NP I+L D
Sbjct: 122 RKRALECLKXAELEERFANHKPN-----------QLSGGQQQRVAIARALANNPPIILAD 170
Query: 369 EATSALDAESELIVQRALEKIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 419
E T ALD+++ + + L+K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 171 EPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 106 bits (265), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 116/217 (53%), Gaps = 4/217 (1%)
Query: 204 GQIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
GQ+ ++ Y + + EN++FS+ G+ +G +GSGKST++S RL T G+
Sbjct: 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE 76
Query: 264 ILLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVI-EAAKAANA 322
I +DG S+ L+ R+ G++ Q+ +F+ + N L A D+ I + A
Sbjct: 77 IQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN--LDPNAAHSDQEIWKVADEVGL 134
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
S +E P + +GG LS G KQ + +AR+VL KILLLDE ++ LD + I+
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 383 QRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQV 419
+R L++ ++ T I+ R+ + + D +V++ +V
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKV 231
Score = 103 bits (256), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 3/222 (1%)
Query: 833 GNIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
G + +++++ KY I EN++ +S G+ + ++G++GSGKST++S +R + G
Sbjct: 18 GQMTVKDLTAKY-TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANA 952
+ IDG ++ L R+ G++ Q+ +FS T +N+ N S+ E+ K
Sbjct: 76 EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLD-PNAAHSDQEIWKVADEVGL 134
Query: 953 HGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLI 1012
I + P + D G LS G KQ + +AR++L ILLLDE ++ LD + +I
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1013 QEALDKLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGS 1054
+ L + T I+ R+ + D+ V+++ KV + S
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDS 236
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 279
V + +N + G+ +GPSGSGKST + + L + G+I++DG +LK+ L +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 280 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 327
RE++G+V Q LF ++ NNI L E +M+ + + AH++
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 156
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
PD LSGGQ QR+AIARA+ PKI+L DE TSALD E V ++
Sbjct: 157 --PD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 388 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++ + T +VV H + R+V D ++ + G ++E G DL +
Sbjct: 204 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 72/228 (31%), Positives = 111/228 (48%), Gaps = 31/228 (13%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLR 907
+ + + +N+ + G + V+G SGSGKST + + D G ++IDG +++ NL
Sbjct: 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 96
Query: 908 SLRRKIGLVQQEPALFS-TTIYENI--------KYGNE--DASEIELM-KATKAANAHGF 955
+R ++G+V Q LF T+ NI K+ E +A +EL+ K AH +
Sbjct: 97 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY 156
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
P+ LSGGQ QRVAIARA+ P I+L DE TSALD +
Sbjct: 157 ----PD-----------SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSV 201
Query: 1016 LDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
+ +L EG T ++V H + R D++ + G + E G E L +
Sbjct: 202 MKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 104 bits (260), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 81/240 (33%), Positives = 129/240 (53%), Gaps = 25/240 (10%)
Query: 835 IELRNVSFKYPVRPDITI-FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
++L+NV+ Y + +I +N+NL + G ++++G SGSGKST+++++ P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 894 VLIDGYDIRTLN---LRSLRR-KIGLVQQEPALFST-TIYENI------KYGNEDASEIE 942
V ID L+ L +RR KIG V Q+ L T EN+ KY + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 943 LMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
+A + ++ + E + +H + QLSGGQ+QRVAIARA+ NP I+L D+ T
Sbjct: 122 RKRALECLK----MAELEERFANH---KPNQLSGGQQQRVAIARALANNPPIILADQPTW 174
Query: 1003 ALDTASENLIQEALDKLME--GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
ALD+ + I + L KL E G+T ++V H ++ R ++I L+ G+V E+ LR
Sbjct: 175 ALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV----EREEKLR 230
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 117/214 (54%), Gaps = 28/214 (13%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG---HDLKSLQL-KW 278
+N+N ++ G+ + +GPSGSGKST+++++ L +PT G++ +D +DL +L K
Sbjct: 21 LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80
Query: 279 LREQMGLVSQE----PALFATSIANNILLGKEDASM------DRVIEAAKAAN-AHSFVE 327
R+++G V Q+ P L A L+ K +M R +E K A F
Sbjct: 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFAN 140
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
P+ QLSGGQ+QR+AIARA+ NP I+L D+ T ALD+++ + + L+
Sbjct: 141 HKPN-----------QLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLK 189
Query: 388 KIMSN--RTTIVVAHRLSTVRDVDTIMVLKNGQV 419
K+ +T +VV H ++ R + I+ LK+G+V
Sbjct: 190 KLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 74/226 (32%), Positives = 116/226 (51%), Gaps = 31/226 (13%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS--LQLKWL 279
V + +N + G+ +GPSGSGKST + + L + G+I++DG +LK+ L +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 280 REQMGLVSQEPALFA-TSIANNILLGK-----------EDASMDRVIEAAKAANAHSFVE 327
RE++G+V Q LF ++ NNI L E +M+ + + AH++
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAY-- 135
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
PD LSGGQ QR+AIARA+ PKI+L DE TSALD E V ++
Sbjct: 136 --PDS-----------LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 182
Query: 388 KIMSN-RTTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISK 431
++ + T +VV H + R+V D ++ + G ++E G DL +
Sbjct: 183 QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 106/217 (48%), Gaps = 9/217 (4%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRT--LNLR 907
+ + + +N+ + G + V+G SGSGKST + + D G ++IDG +++ NL
Sbjct: 16 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLN 75
Query: 908 SLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSH 966
+R ++G+V Q LF T+ NI + KA A A + ++ G +
Sbjct: 76 KVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAE--AKAMELLDKV--GLKDK 131
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTT 1025
LSGGQ QRVAIARA+ P I+L DE TSALD + + +L EG T
Sbjct: 132 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTM 191
Query: 1026 IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
++V H + R D++ + G + E G E L +
Sbjct: 192 VVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 228
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate
Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 101 bits (252), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 27/223 (12%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGL 915
++ ++ G + ++G SGSGK+T++ L+ P G V I G R +L +R +GL
Sbjct: 34 VSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGK--RVTDLPPQKRNVGL 91
Query: 916 VQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGYQSHVG 968
V Q ALF T+Y+N+ +G +D + + + + + +R P
Sbjct: 92 VFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPH------- 144
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS----ENLIQEALDKLMEGRT 1024
+LSGGQ+QRVA+ARA+ P +LL DE +A+DT +++ D++ G T
Sbjct: 145 ----ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEM--GVT 198
Query: 1025 TIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIY 1066
++ V H + + AD++ VL +G V + G+ E++ K ++
Sbjct: 199 SVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 92.4 bits (228), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 116/238 (48%), Gaps = 24/238 (10%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
IEF V YP V ++F + G+ +GPSGSGK+TI+ ++ L PT G +
Sbjct: 15 IEFVGVEKIYPGGARSV-RGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFA-TSIANNILLGKEDA-----SMD-RVIEAAK 318
+ G + L + + +GLV Q ALF ++ +N+ G + MD RV E +
Sbjct: 74 IGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLR 131
Query: 319 AANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAES 378
S+ P +LSGGQ+QR+A+ARA+ P++LL DE +A+D +
Sbjct: 132 FMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQI 180
Query: 379 ELIVQRALEKIMSNR--TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDLISKGG 433
++ + ++ T++ V H +V D ++VL G V + GT ++ K G
Sbjct: 181 RRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 101 bits (252), Expect = 2e-21, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
EN++ ++ G+ G +GSGKST++ +V L EPTSG +L DG K + +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 283 MGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
+G+ Q P FA + + + ++ DR A FV D ++ +V
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 135
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 399
LSGG+K+R+AIA ++ P IL+LDE LD E + + R +EK + +T I+++
Sbjct: 136 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 195
Query: 400 HRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 431
H + TV VD ++VL+ G+ V GT ++ + K
Sbjct: 196 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 99.0 bits (245), Expect = 1e-20, Method: Composition-based stats.
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 21/237 (8%)
Query: 835 IELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISG 892
IE+ NVS F + EN++L ++ G L V G +GSGKST++ +V +P SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 893 TVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIELMKA 946
VL DG + +RR IG+ Q P F+ +++ + + + D + L+K
Sbjct: 63 DVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK- 118
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
A F+ + ++ V LSGG+K+RVAIA I+ P IL+LDE LD
Sbjct: 119 ----KAMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 1007 ASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
+ + ++K G+T I+++H + T+ N D++ VL++GK G+ + L K
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 101 bits (251), Expect = 2e-21, Method: Composition-based stats.
Identities = 69/213 (32%), Positives = 113/213 (53%), Gaps = 11/213 (5%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
EN++ ++ G+ G +GSGKST++ +V L EPTSG +L DG K + +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 283 MGLVSQEP--ALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEG 340
+G+ Q P FA + + + ++ DR A FV D ++ +V
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDR-DPVPLVKKAMEFVGLDFDSFKDRV--- 137
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVA 399
LSGG+K+R+AIA ++ P IL+LDE LD E + + R +EK + +T I+++
Sbjct: 138 PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILIS 197
Query: 400 HRLSTV-RDVDTIMVLKNGQVVESGTHVDLISK 431
H + TV VD ++VL+ G+ V GT ++ + K
Sbjct: 198 HDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
Score = 100 bits (250), Expect = 3e-21, Method: Composition-based stats.
Identities = 75/239 (31%), Positives = 122/239 (51%), Gaps = 21/239 (8%)
Query: 833 GNIELRNVS--FKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPI 890
G IE+ NVS F + EN++L ++ G L V G +GSGKST++ +V +P
Sbjct: 3 GRIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPT 62
Query: 891 SGTVLIDGYDIRTLNLRSLRRKIGLVQQEP--ALFSTTIYENIKYGNE----DASEIELM 944
SG VL DG + +RR IG+ Q P F+ +++ + + + D + L+
Sbjct: 63 SGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLV 119
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
K A F+ + ++ V LSGG+K+RVAIA I+ P IL+LDE L
Sbjct: 120 K-----KAMEFVGLDFDSFKDRV---PFFLSGGEKRRVAIASVIVHEPDILILDEPLVGL 171
Query: 1005 DTASENLIQEALDKLME-GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLRK 1061
D + + ++K G+T I+++H + T+ N D++ VL++GK G+ + L K
Sbjct: 172 DREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 15/221 (6%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NVSF + + +N+NL + G LA+ G +GSGK++++ L++ + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
++ Q + TI ENI +G E KA I++
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1017
E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD LD E + + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 322
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQL 139
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 381
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 100 bits (250), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 15/221 (6%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NVSF + + +N+NL + G LA+ G +GSGK++++ L++ + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
++ Q + TI ENI +G E KA I++
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIFG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1017
E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD LD E + + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 322
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIFG---VSYDEYRYKSVVKACQL 139
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 381
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NVSF + + +N+NL + G LA+ G +GSGK++++ L++ + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
++ Q + TI ENI G E KA I++
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIRG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1017
E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD LD E + + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 322
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIRG---VSYDEYRYKSVVKACQL 139
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 381
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 99.0 bits (245), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 15/221 (6%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NVSF + + +N+NL + G LA+ G +GSGK++++ L++ + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
++ Q + TI ENI G E KA I++
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIISG-VSYDEYRYKSVVKACQLQQDITK 145
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1017
E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD LD E + + +
Sbjct: 146 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 205
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 206 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
Score = 92.8 bits (229), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 109/229 (47%), Gaps = 23/229 (10%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANA 322
G ++ SQ + +I NI+ G S D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIISG---VSYDEYRYKSVVKACQL 139
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELI 381
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E +
Sbjct: 140 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 199
Query: 382 VQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ + K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 200 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 248
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 98.2 bits (243), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 16/221 (7%)
Query: 839 NVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG 898
NVSF + + +N+NL + G LA+ G +GSGK++++ L++ + G + G
Sbjct: 40 NVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG 99
Query: 899 YDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISR 958
++ Q + TI ENI + D E KA I++
Sbjct: 100 -------------RVSFCSQFSWIMPGTIKENIIGVSYD--EYRYKSVVKACQLQQDITK 144
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT-ASENLIQEALD 1017
E + +G+ GV LSGGQ+ R+++ARA+ K+ + LLD LD E + + +
Sbjct: 145 FAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVC 204
Query: 1018 KLMEGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
KLM +T I+V ++ +R ADKI +L QG G+ +L
Sbjct: 205 KLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 245
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 107/227 (47%), Gaps = 20/227 (8%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+ FS +C P V +N+N +++ G+ A G +GSGK++++ ++ E + G I
Sbjct: 40 NVSFSHLCLV--GNP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHS 324
G ++ SQ + +I NI+ D R KA
Sbjct: 96 KHSG-------------RVSFCSQFSWIMPGTIKENIIGVSYDEY--RYKSVVKACQLQQ 140
Query: 325 FVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDA-ESELIVQ 383
+ + T +GEGG LSGGQ+ RI++ARAV ++ + LLD LD E + +
Sbjct: 141 DITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFE 200
Query: 384 RALEKIMSNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ K+M+N+T I+V ++ +R D I++L G GT +L S
Sbjct: 201 SCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQS 247
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter
Length = 372
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L N++ ++ + T LNL + G L ++G SG GK+T + ++ +P G +
Sbjct: 12 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 947
D+ L + R I +V Q A++ T+YENI + +D + + A
Sbjct: 69 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 126
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ ++R P QLSGGQ+QRVA+ARAI+ P +LL+DE S LD
Sbjct: 127 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175
Query: 1008 SENLIQEALDKLMEGR--TTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
++ + KL + TTI V H ++ + D+IAV+ +G++ +IGS ++ + N
Sbjct: 176 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 235
Query: 1065 IY 1066
++
Sbjct: 236 VF 237
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
LN ++ G+ +GPSG GK+T + M+ L EPT G+I D+ L K +
Sbjct: 29 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 86
Query: 285 LVSQEPALFA-TSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
+V Q A++ ++ NI L + D + + + A +E L + Y Q
Sbjct: 87 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ----- 141
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 399
LSGGQ+QR+A+ARA++ P +LL+DE S LDA+ + ++ ++K+ TTI V
Sbjct: 142 --LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 199
Query: 400 H-RLSTVRDVDTIMVLKNGQVVESGT 424
H ++ + D I V+ GQ+++ G+
Sbjct: 200 HDQVEAMTMGDRIAVMNRGQLLQIGS 225
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar
Transporter From Pyrococcus Horikoshii Ot3 Complexed With
Atp
Length = 373
Score = 97.1 bits (240), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
++L N++ ++ + T LNL + G L ++G SG GK+T + ++ +P G +
Sbjct: 13 VKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 69
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYG------NEDASEIELMKAT 947
D+ L + R I +V Q A++ T+YENI + +D + + A
Sbjct: 70 YFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAA 127
Query: 948 KAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTA 1007
+ ++R P QLSGGQ+QRVA+ARAI+ P +LL+DE S LD
Sbjct: 128 ELLQIEELLNRYP-----------AQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 176
Query: 1008 SENLIQEALDKLMEGR--TTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
++ + KL + TTI V H ++ + D+IAV+ +G++ +IGS ++ + N
Sbjct: 177 LRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNS 236
Query: 1065 IY 1066
++
Sbjct: 237 VF 238
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 64/206 (31%), Positives = 107/206 (51%), Gaps = 15/206 (7%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
LN ++ G+ +GPSG GK+T + M+ L EPT G+I D+ L K +
Sbjct: 30 KLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNIS 87
Query: 285 LVSQEPALFA-TSIANNIL--LGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
+V Q A++ ++ NI L + D + + + A +E L + Y Q
Sbjct: 88 MVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ----- 142
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIVVA 399
LSGGQ+QR+A+ARA++ P +LL+DE S LDA+ + ++ ++K+ TTI V
Sbjct: 143 --LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVT 200
Query: 400 H-RLSTVRDVDTIMVLKNGQVVESGT 424
H ++ + D I V+ GQ+++ G+
Sbjct: 201 HDQVEAMTMGDRIAVMNRGQLLQIGS 226
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 97.1 bits (240), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI +G E KA IS+ E +G+ G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 188
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 189 KMEHLKKADKILILHEGSSYFYGTFSEL 216
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 70 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 126
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 398
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 127 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 186
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 187 TSKMEHLKKADKILILHEGSSYFYGTFSEL 216
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 96.7 bits (239), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 64/215 (29%), Positives = 114/215 (53%), Gaps = 23/215 (10%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKI 913
+ ++ +V G +A++G SG GK+T + ++ Y P SG + D D+ ++ R++
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD--DVLVNDIPPKYREV 77
Query: 914 GLVQQEPALFS-TTIYENIKYG------NEDASEIELMKATKAANAHGFISRMPEGYQSH 966
G+V Q AL+ T++ENI + ++D E +++ + + R P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP------ 131
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GRT 1024
QLSGGQ+QRVA+ARA++K P +LL DE S LD +++ + L + G T
Sbjct: 132 -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 1025 TIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ V H + + A +IAV QGK+ + G+ +++
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV 221
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 123/237 (51%), Gaps = 29/237 (12%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQM 283
+ ++F V G+ A +GPSG GK+T + M+ +Y+PTSG+I D + + K+ ++
Sbjct: 20 DGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--REV 77
Query: 284 GLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
G+V Q AL+ ++ NI +D RV+E A+ + ++ P
Sbjct: 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKP------ 131
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--T 394
TQLSGGQ+QR+A+ARA+++ PK+LL DE S LDA +I++ ++ + T
Sbjct: 132 -----TQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGIT 186
Query: 395 TIVVAHRLSTVRDVDT-IMVLKNGQVVESGTHVDLISKGGEYAALVNLQSSEHLSNP 450
++ V H + + + I V G++V+ GT ++ Y + N+ + + NP
Sbjct: 187 SVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEV------YDSPKNMFVASFIGNP 237
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 77/239 (32%), Positives = 128/239 (53%), Gaps = 29/239 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I ++NVS K + + +N+N+ + G ++G SG+GK+T + ++ P +G +
Sbjct: 4 IIVKNVS-KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 895 LIDGYDIRT---LNLRSLRRKIGLVQQEPALFST-TIYENIKYG--NEDASEIELMK--- 945
D + + L + RKIG+V Q AL+ T +ENI + N S+ E+ K
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 946 -ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
K + H ++ P +LSGGQ+QRVA+ARA++K+PS+LLLDE S L
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGGQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1005 DT----ASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
D ++ L++E +L G T ++V+H + I AD++ VL +GK+ ++G E L
Sbjct: 172 DARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 93.2 bits (230), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 118/221 (53%), Gaps = 28/221 (12%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWL 279
+N+N +++ G+ F +GPSG+GK+T + ++ L P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 280 REQMGLVSQEPALFATSIA--------NNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 331
++G+V Q AL+ A N+ + KE+ RV E AK + H + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-KRVEEVAKILDIHHVLNHFP- 138
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 391
+LSGGQ+QR+A+ARA++++P +LLLDE S LDA RAL K +
Sbjct: 139 ----------RELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQ 187
Query: 392 NR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
+R T +VV+H + + + D + VL G++V+ G DL
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 96.7 bits (239), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 15/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI +G E KA IS+ E +G+ G
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFGV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 141 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 200
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 201 KMEHLKKADKILILHEGSSYFYGTFSEL 228
Score = 96.3 bits (238), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 35 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 81
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 82 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 138
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 398
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 139 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 198
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 199 TSKMEHLKKADKILILHEGSSYFYGTFSEL 228
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc
Transporter From Sulfolobus Solfataricus
Length = 353
Score = 94.4 bits (233), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 76/239 (31%), Positives = 127/239 (53%), Gaps = 29/239 (12%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
I ++NVS K + + +N+N+ + G ++G SG+GK+T + ++ P +G +
Sbjct: 4 IIVKNVS-KVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 895 LIDGYDIRT---LNLRSLRRKIGLVQQEPALFST-TIYENIKYG--NEDASEIELMK--- 945
D + + L + RKIG+V Q AL+ T +ENI + N S+ E+ K
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 946 -ATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
K + H ++ P +LSG Q+QRVA+ARA++K+PS+LLLDE S L
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1005 DT----ASENLIQEALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
D ++ L++E +L G T ++V+H + I AD++ VL +GK+ ++G E L
Sbjct: 172 DARMRDSARALVKEVQSRL--GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/221 (31%), Positives = 117/221 (52%), Gaps = 28/221 (12%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKS---LQLKWL 279
+N+N +++ G+ F +GPSG+GK+T + ++ L P++G++ D + S L +
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80
Query: 280 REQMGLVSQEPALFATSIA--------NNILLGKEDASMDRVIEAAKAANAHSFVEGLPD 331
++G+V Q AL+ A N+ + KE+ RV E AK + H + P
Sbjct: 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR-KRVEEVAKILDIHHVLNHFP- 138
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS 391
+LSG Q+QR+A+ARA++++P +LLLDE S LDA RAL K +
Sbjct: 139 ----------RELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMR-DSARALVKEVQ 187
Query: 392 NR---TTIVVAHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
+R T +VV+H + + + D + VL G++V+ G DL
Sbjct: 188 SRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI + D E KA IS+ E +G+ G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 93.2 bits (230), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 400
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 401 RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI + D E KA IS+ E +G+ G
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 400
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 401 RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 94.0 bits (232), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 104/210 (49%), Gaps = 19/210 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 398
GG LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 157 GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI G E KA IS+ E +G+ G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIAG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 159 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 93.6 bits (231), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 104/208 (50%), Gaps = 16/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI + D E KA IS+ E +G+ G
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LSGGQ+ R+++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 69
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 70 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 127
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 400
LSGGQ+ RI++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 128 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 187
Query: 401 RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 188 KMEHLKKADKILILHEGSSYFYGTFSEL 215
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 93.6 bits (231), Expect = 6e-19, Method: Composition-based stats.
Identities = 72/220 (32%), Positives = 113/220 (51%), Gaps = 26/220 (11%)
Query: 856 LNLKVSAGRSLAVV-GQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIG 914
LN+ GR V+ G +G+GKS + L+ P G V ++G DI L RR IG
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 915 LVQQEPALFS-TTIYENIKYGNEDASEIELMK-----ATKAANAHGFISRMPEGYQSHVG 968
V Q+ ALF ++Y NI YG + +E + A K AH + R P
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAH-LLDRKP-------- 124
Query: 969 DRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMV 1028
+LSGG++QRVA+ARA++ P +LLLDE SA+D ++ ++ E L + ++ + +
Sbjct: 125 ---ARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEEL-RFVQREFDVPI 180
Query: 1029 AH----RLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENG 1064
H + AD++AV+ G++ E G ++L +NG
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNG 220
Score = 84.0 bits (206), Expect = 4e-16, Method: Composition-based stats.
Identities = 64/224 (28%), Positives = 112/224 (50%), Gaps = 15/224 (6%)
Query: 226 LNFSVDAGKTF-AFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMG 284
LN + G+ + +GP+G+GKS + ++ + +P G++ L+G D+ L + R +G
Sbjct: 16 LNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 285 LVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGTQ 343
V Q+ ALF S+ NI G + + + L D +
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD-------RKPAR 126
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV--VAHR 401
LSGG++QR+A+ARA++ P++LLLDE SA+D +++ ++ L + + V H
Sbjct: 127 LSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHD 186
Query: 402 L-STVRDVDTIMVLKNGQVVESGTHVDLIS-KGGEYAALVNLQS 443
L D + V+ NG++VE G +L S K GE A ++ ++
Sbjct: 187 LIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 93.6 bits (231), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 18/231 (7%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+++L+NV+ + ++ + +++NL + G + VG SG GKST++ ++ SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ I + R + R +G+V Q AL+ ++ EN+ +G ++L A K
Sbjct: 60 LFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV-I 110
Query: 953 HGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ ++++ E Q +H+ DR + LSGGQ+QRVAI R ++ PS+ LLDE S LD A
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1011 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ + +L + GRT I V H ++ + ADKI VL G+VA++G +L
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAE 74
Query: 281 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 392
LSGGQ+QR+AI R ++ P + LLDE S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 393 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 93.2 bits (230), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 74/231 (32%), Positives = 128/231 (55%), Gaps = 18/231 (7%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+++L+NV+ + ++ + +++NL + G + VG SG GKST++ ++ SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ I + R + R +G+V Q AL+ ++ EN+ +G ++L A K
Sbjct: 60 LFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV-I 110
Query: 953 HGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ ++++ E Q +H+ DR + LSGGQ+QRVAI R ++ PS+ LLDE S LD A
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRV 170
Query: 1011 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ + +L + GRT I V H ++ + ADKI VL G+VA++G +L
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 80.9 bits (198), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 64/218 (29%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDT--PPAE 74
Query: 281 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 392
LSGGQ+QR+AI R ++ P + LLDE S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRL 183
Query: 393 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 128/231 (55%), Gaps = 18/231 (7%)
Query: 834 NIELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGT 893
+++L+NV+ + ++ + +++NL + G + VG SG GKST++ ++ SG
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 894 VLIDGYDIRTLNLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANA 952
+ I + R + R +G+V Q AL+ ++ EN+ +G ++L A K
Sbjct: 60 LFIG--EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKKEV-I 110
Query: 953 HGFISRMPEGYQ-SHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASEN 1010
+ ++++ E Q +H+ DR + LSGGQ+QRVAI R ++ PS+ LLD+ S LD A
Sbjct: 111 NQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRV 170
Query: 1011 LIQEALDKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ + +L + GRT I V H ++ + ADKI VL G+VA++G +L
Sbjct: 171 QMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Score = 79.7 bits (195), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 23/218 (10%)
Query: 221 MVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLR 280
+V +++N + G+ FVGPSG GKST++ M+ L TSG + + +
Sbjct: 17 VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND--TPPAE 74
Query: 281 EQMGLVSQEPALFA-TSIANNILLG------KEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+G+V Q AL+ S+A N+ G K++ RV + A+ ++ P
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA- 133
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN- 392
LSGGQ+QR+AI R ++ P + LLD+ S LDA + ++ + ++
Sbjct: 134 ----------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRL 183
Query: 393 -RTTIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
RT I V H ++ + D I+VL G+V + G ++L
Sbjct: 184 GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 15/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI +G E KA IS+ E +G+ G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG-VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LS GQ+ ++++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 159 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 218
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 219 KMEHLKKADKILILHEGSSYFYGTFSEL 246
Score = 89.7 bits (221), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 60/210 (28%), Positives = 103/210 (49%), Gaps = 19/210 (9%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMD--RVIEAAKAANAHSFVEGLPDGYQTQVGE 339
++ SQ + +I NI+ G S D R KA + + +GE
Sbjct: 100 RISFCSQFSWIMPGTIKENIIFG---VSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGE 156
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVV 398
GG LS GQ+ +I++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 157 GGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILV 216
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 217 TSKMEHLKKADKILILHEGSSYFYGTFSEL 246
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 89.4 bits (220), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/237 (29%), Positives = 117/237 (49%), Gaps = 27/237 (11%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
IEL +VSF+Y + +++N + G+ VVG++GSGK+T++ ++ +G +
Sbjct: 12 IELNSVSFRYNGD---YVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPA--LFSTTIYENIKYGNE----DASEIE--LMKA 946
+DG LR+ +G V Q P+ + T+ E++ + E D SE+ + K
Sbjct: 68 FLDGSPADPF---LLRKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 947 TKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDT 1006
+ G + P + LSGGQKQR+AIA + ++ L LDE S LD
Sbjct: 125 LELVGLSGLAAADP-----------LNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDP 173
Query: 1007 ASENLIQEALDKLM-EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
S+ I + L+ L EG+ I+V H L + + D I + G + GS E+ + +E
Sbjct: 174 PSQREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVERE 230
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/230 (27%), Positives = 109/230 (47%), Gaps = 14/230 (6%)
Query: 205 QIEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
+IE + V F Y V +++N + GK + VG +GSGK+T++ ++ L +G+I
Sbjct: 11 RIELNSVSFRYNG--DYVLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEI 67
Query: 265 LLDGHDLKSLQLKWLREQMGLVSQEPA--LFATSIANNILLGKEDASMDRVIEAAKAANA 322
LDG L R+ +G V Q P+ + ++ ++ E +D +
Sbjct: 68 FLDGSPADPFLL---RKNVGYVFQNPSSQIIGATVEEDVAFSLEIMGLDESEMRKRIKKV 124
Query: 323 HSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIV 382
V G LSGGQKQR+AIA + R+ + L LDE S LD S+ +
Sbjct: 125 LELV-----GLSGLAAADPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREI 179
Query: 383 QRALEKIMSN-RTTIVVAHRLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
+ LE + + + I+V H L + D+D I+ + NG + G+ + + +
Sbjct: 180 FQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVER 229
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The
Abc Transporter Complex Cbionq
Length = 275
Score = 88.2 bits (217), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/230 (29%), Positives = 115/230 (50%), Gaps = 18/230 (7%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDG--YDIRTLNLRSLR 910
+ +N+ + G A++G +G GKST+ P SG +L D D + LR
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 911 RKIGLVQQEP--ALFSTTIYENIKYG--NEDASEIELMKATKAANAHGFISRMPEGYQSH 966
IG+V Q+P LFS ++Y+++ +G N E E+ K A I H
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE--------H 135
Query: 967 VGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME--GR 1023
+ D+ LS GQK+RVAIA ++ P +L+LDE T+ LD + I + L ++ + G
Sbjct: 136 LKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGI 195
Query: 1024 TTIMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRL 1072
T I+ H + + D + V+++G+V G+ +++ ++ I K +RL
Sbjct: 196 TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEKEVIRKVNLRL 245
Score = 84.7 bits (208), Expect = 2e-16, Method: Composition-based stats.
Identities = 64/227 (28%), Positives = 112/227 (49%), Gaps = 17/227 (7%)
Query: 206 IEFSEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKIL 265
++ E+ + Y H + +N ++ G+ A +G +G GKST+ + +P+SG+IL
Sbjct: 8 LKVEELNYNYSDGTH-ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRIL 66
Query: 266 LDGH--DLKSLQLKWLREQMGLVSQEP--ALFATSIANNILLGKEDASM--DRVIEAAKA 319
D D + LRE +G+V Q+P LF+ S+ ++ G + + D + +
Sbjct: 67 FDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDN 126
Query: 320 ANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESE 379
A + +E L D + LS GQK+R+AIA ++ PK+L+LDE T+ LD
Sbjct: 127 ALKRTGIEHLKD-------KPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGV 179
Query: 380 LIVQRALEKIMSNR--TTIVVAHRLSTVR-DVDTIMVLKNGQVVESG 423
+ + L ++ T I+ H + V D + V+K G+V+ G
Sbjct: 180 SEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With
Atp
Length = 290
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 16/208 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++N K+ G+ LAV G +G+GK++++ ++M +P G + G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 912 KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRG 971
+I Q + TI ENI + D E KA IS+ E +G+ G
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYD--EYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
Query: 972 VQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE-ALDKLMEGRTTIMVAH 1030
+ LS GQ+ ++++ARA+ K+ + LLD LD +E I E + KLM +T I+V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 1031 RLSTIRNADKIAVLQQGKVAEIGSHEQL 1058
++ ++ ADKI +L +G G+ +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
Score = 86.3 bits (212), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/208 (27%), Positives = 102/208 (49%), Gaps = 16/208 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLRE 281
V +++NF ++ G+ A G +G+GK++++ M+ EP+ GKI G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 282 QMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
++ SQ + +I NI+ D R + KA + + +GEGG
Sbjct: 100 RISFCSQFSWIMPGTIKENIIGVSYDEYRYRSV--IKACQLEEDISKFAEKDNIVLGEGG 157
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESEL-IVQRALEKIMSNRTTIVVAH 400
LS GQ+ +I++ARAV ++ + LLD LD +E I + + K+M+N+T I+V
Sbjct: 158 ITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTS 217
Query: 401 RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
++ ++ D I++L G GT +L
Sbjct: 218 KMEHLKKADKILILHEGSSYFYGTFSEL 245
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/221 (32%), Positives = 116/221 (52%), Gaps = 15/221 (6%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI--RTLNL 906
+ + +++L + G L ++G SG GK+T++ + F P SG + + G I + NL
Sbjct: 16 NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNL 75
Query: 907 RSLRRKIGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPE--GY 963
R++G + QE LF T+Y NI YG + + A I M E G
Sbjct: 76 PVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGI 128
Query: 964 QSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME-- 1021
G +LSGGQ+QR A+ARA+ +P ++LLDE SALD I+E + +
Sbjct: 129 SELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRAN 188
Query: 1022 GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
G++ + V+H R ++ AD+IAV++QG++ + S +L R+
Sbjct: 189 GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/215 (28%), Positives = 112/215 (52%), Gaps = 15/215 (6%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL--KSLQLKWL 279
V +++ S+D G+ +G SG GK+T++ + +P SG+I L G + K+ L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVR 78
Query: 280 REQMGLVSQEPALFAT-SIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPD--GYQTQ 336
++G + QE LF ++ NI G + + A +E + + G
Sbjct: 79 ERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK-------GRTAQERQRIEAMLELTGISEL 131
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE-SELIVQRALEKIMSN-RT 394
G +LSGGQ+QR A+ARA+ +P+++LLDE SALD + I + + + +N ++
Sbjct: 132 AGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKS 191
Query: 395 TIVVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDL 428
+ V+H R ++ D I V+K G+++++ + +L
Sbjct: 192 AVFVSHDREEALQYADRIAVMKQGRILQTASPHEL 226
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/203 (31%), Positives = 99/203 (48%), Gaps = 9/203 (4%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL-- 909
I + ++L V G ++++G SGSGKST++ ++ P G V ++G ++ N + L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 910 --RRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
RK+G V Q F I E N +++ K K A G G +
Sbjct: 79 LRNRKLGFVFQ----FHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTI- 1026
+ +LSGG++QRVAIARA+ P +L DE T LD+A+ + + K+ EG T+I
Sbjct: 135 SRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIV 194
Query: 1027 MVAHRLSTIRNADKIAVLQQGKV 1049
MV H + ++ GKV
Sbjct: 195 MVTHERELAELTHRTLEMKDGKV 217
Score = 76.6 bits (187), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 68/217 (31%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 218 RPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL---KSL 274
R + + + ++ SV G+ + +G SGSGKST++ ++ L PT GK+ L+G ++
Sbjct: 15 RGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEK 74
Query: 275 QLKWLR-EQMGLVSQEPALFA--TSIANNILLGKEDASMDRVIEAAKAANAHSFVE-GLP 330
+L LR ++G V Q L T++ N I+ M + + AK + E GL
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIV---PMLKMGKPKKEAKERGEYLLSELGLG 131
Query: 331 DGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM 390
D ++ +LSGG++QR+AIARA+ P +L DE T LD+ + V KI
Sbjct: 132 D----KLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 391 SNRTTIV-VAHRLSTVRDVDTIMVLKNGQVVESGTHV 426
T+IV V H + +K+G+VV T V
Sbjct: 188 EGGTSIVMVTHERELAELTHRTLEMKDGKVVGEITRV 224
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 112/223 (50%), Gaps = 17/223 (7%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTL 904
D+T ++L+L++ G L ++G SG GK+T + + +P G + I+ + + +
Sbjct: 18 DVTAVKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGV 77
Query: 905 NLRSLRRKIGLVQQEPALFS-TTIYENIKYGNEDASEIELMKATKAANAHGFISRMPE-- 961
+ R + V Q AL+ T+Y+NI + ++L K K + + E
Sbjct: 78 FVPPKERDVAXVFQSYALYPHXTVYDNIAF------PLKLRKVPKQ-EIDKRVREVAEXL 130
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLME 1021
G + + +LSGGQ+QRVA+ RAI++ P + L DE S LD + L KL
Sbjct: 131 GLTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQR 190
Query: 1022 --GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
G TTI V H ++ D+IAV +G++ ++G+ +++ K
Sbjct: 191 QLGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGTPDEVYYK 233
Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 101/209 (48%), Gaps = 13/209 (6%)
Query: 224 ENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL----KSLQLKWL 279
++L+ + G+ +GPSG GK+T + + L EPT G+I ++ + + K + +
Sbjct: 23 KDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPPK 82
Query: 280 REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ V Q AL+ ++ +NI + +V + E L G +
Sbjct: 83 ERDVAXVFQSYALYPHXTVYDNIAFP---LKLRKVPKQEIDKRVREVAEXL--GLTELLN 137
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTI 396
+LSGGQ+QR+A+ RA++R PK+ L DE S LDA+ + + L+K+ TTI
Sbjct: 138 RKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGVTTI 197
Query: 397 VVAH-RLSTVRDVDTIMVLKNGQVVESGT 424
V H ++ D I V G++ + GT
Sbjct: 198 YVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 114/228 (50%), Gaps = 27/228 (11%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDI----RTL 904
++T ++L+V G + ++G SG GK+T + ++ +P G + I + + +
Sbjct: 15 EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGI 74
Query: 905 NLRSLRRKIGLVQQEPALFS-TTIYENI----KYGNEDASEIELMKATKAANAHGF---I 956
+ R I +V Q AL+ T+Y+NI K EI+ + + A G +
Sbjct: 75 FVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID-QRVREVAELLGLTELL 133
Query: 957 SRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEAL 1016
+R P +LSGGQ+QRVA+ RAI++ P + L+DE S LD ++ L
Sbjct: 134 NRKPR-----------ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 1017 DKLME--GRTTIMVAH-RLSTIRNADKIAVLQQGKVAEIGSHEQLLRK 1061
KL G TTI V H ++ + D+IAV+ +G + ++GS +++ K
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 60/216 (27%), Positives = 105/216 (48%), Gaps = 15/216 (6%)
Query: 225 NLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDL-----KSLQLKWL 279
++ V G+ +GPSG GK+T + M+ L EP+ G+I + G L K + +
Sbjct: 21 EMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYI-GDKLVADPEKGIFVPPK 79
Query: 280 REQMGLVSQEPALFA-TSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVG 338
+ +V Q AL+ ++ +NI + +V E L G +
Sbjct: 80 DRDIAMVFQSYALYPHMTVYDNIAF---PLKLRKVPRQEIDQRVREVAELL--GLTELLN 134
Query: 339 EGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTI 396
+LSGGQ+QR+A+ RA++R P++ L+DE S LDA+ + ++ L+K+ TTI
Sbjct: 135 RKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTI 194
Query: 397 VVAH-RLSTVRDVDTIMVLKNGQVVESGTHVDLISK 431
V H ++ + D I V+ G + + G+ ++ K
Sbjct: 195 YVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 118/225 (52%), Gaps = 23/225 (10%)
Query: 854 ENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDP----ISGTVLIDGYDIRTL---NL 906
+ ++L + A+VG+S SGKST+I + + P +SG VL G D+ T+ L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 907 RSLR-RKIGLVQQ--EPALFSTT-IYENIKYGNEDA----SEIELMKATKAANAHGFISR 958
R +R ++I LV Q + +L T + E+ K E S EL++ KA+ +
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMVRL 142
Query: 959 MPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE-NLIQEALD 1017
PE + +QLSGG KQRV IA A+L +P +L+LDE TSALD ++ ++IQ +
Sbjct: 143 NPEAV---LNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKE 199
Query: 1018 KLMEGRTT-IMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
+ T I V H ++ ADK+AV+ G + E S Q+ +
Sbjct: 200 LKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFK 244
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 23/203 (11%)
Query: 237 AFVGPSGSGKSTIISMVQRLYEPT----SGKILLDGHDLKSLQLKWLR----EQMGLVSQ 288
A VG S SGKSTII + + P SG++L G DL +++ + LR +++ LV Q
Sbjct: 38 AIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALVPQ 97
Query: 289 EPALFATSIANNILLGKEDA-------SMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGG 341
I K+ S +IE KA+ V P+ +
Sbjct: 98 AAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMVRLNPEAV---LNSYP 152
Query: 342 TQLSGGQKQRIAIARAVLRNPKILLLDEATSALD--AESELIVQRALEKIMSNRTTIVVA 399
QLSGG KQR+ IA A+L +P +L+LDE TSALD ++ +I K M T I V
Sbjct: 153 LQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHIIQLLKELKKMLKITLIFVT 212
Query: 400 HRLSTVRDV-DTIMVLKNGQVVE 421
H ++ ++ D + V+ G +VE
Sbjct: 213 HDIAVAAELADKVAVIYGGNLVE 235
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 77.8 bits (190), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/243 (25%), Positives = 113/243 (46%), Gaps = 41/243 (16%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+ + N+ F Y + + +F+ LN ++ G LAV+GQ+G GKST++ L++ + PI G +
Sbjct: 5 LSVENLGFYY--QAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHG 954
+ + IG V P FS+ ++ ++++ ++ + +
Sbjct: 63 -------------EVYQSIGFV---PQFFSSPFAYSV---------LDIVLMGRSTHINT 97
Query: 955 FISRMPEGYQ-----------SHVGDRG-VQLSGGQKQRVAIARAILKNPSILLLDEATS 1002
F YQ +H+ R LSGGQ+Q + IARAI ++LLDE TS
Sbjct: 98 FAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157
Query: 1003 ALDTASENLIQEALDKLMEGR--TTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLR 1060
ALD A+++++ L L + + T + H+ + + +L + + G +L
Sbjct: 158 ALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILT 217
Query: 1061 KEN 1063
EN
Sbjct: 218 SEN 220
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 61/213 (28%), Positives = 104/213 (48%), Gaps = 19/213 (8%)
Query: 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 274
Y + +F+ LNF ++ G A +G +G GKST++ ++ ++ P GKI
Sbjct: 13 YYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI---------- 62
Query: 275 QLKWLREQMGLVSQE-PALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+ + +G V Q + FA S+ + +L+G+ ++ K+ + ++ L
Sbjct: 63 ---EVYQSIGFVPQFFSSPFAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQALDYLN 117
Query: 334 QTQVGEGG-TQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM-- 390
T + + T LSGGQ+Q I IARA+ K++LLDE TSALD ++ IV L +
Sbjct: 118 LTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQS 177
Query: 391 SNRTTIVVAHRLSTVRDVDTIMVLKNGQVVESG 423
N T + H+ + V + +L N Q + G
Sbjct: 178 QNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFG 210
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 35/232 (15%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL------- 904
+ + ++L+ AG ++++G SGSGKST + + P G ++++G +I +
Sbjct: 21 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQL 80
Query: 905 ------NLRSLRRKIGLVQQEPALFS-TTIYENIK--------YGNEDASEIELMKATKA 949
LR LR ++ +V Q L+S T+ EN+ DA E +A K
Sbjct: 81 KVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE----RALKY 136
Query: 950 ANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASE 1009
G R Y H LSGGQ+QRV+IARA+ P +LL DE TSALD
Sbjct: 137 LAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELV 189
Query: 1010 NLIQEALDKLM-EGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
+ + +L EG+T ++V H + R+ + + L QGK+ E G EQ+
Sbjct: 190 GEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVF 241
Score = 73.2 bits (178), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 35/228 (15%)
Query: 220 HMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL----- 274
H V + ++ AG + +G SGSGKST + + L +P+ G I+++G ++ +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 275 --------QLKWLREQMGLVSQEPALFA-TSIANNIL--------LGKEDASMDRVIEAA 317
QL+ LR ++ +V Q L++ ++ N++ L K DA + A
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 318 KAANAHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAE 377
K G+ + Q G+ LSGGQ+QR++IARA+ P +LL DE TSALD E
Sbjct: 139 KV--------GIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE 187
Query: 378 SELIVQRALEKIMSN-RTTIVVAHRLSTVRDVDT-IMVLKNGQVVESG 423
V R ++++ +T +VV H + R V + ++ L G++ E G
Sbjct: 188 LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 116/217 (53%), Gaps = 23/217 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG-------HDLKSL 274
+ + ++F ++ G+ F +GP+G+GK+T + ++ L +P+SG + + G H+++ L
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKL 89
Query: 275 QLKWLREQMGLVSQEPAL-FATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGY 333
+ +L E+ G + + +A + ++ ++E A + + GL +
Sbjct: 90 -ISYLPEEAGAYRNMQGIEYLRFVAG--FYASSSSEIEEMVERA------TEIAGLGEKI 140
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR 393
+ +V + S G +++ IARA++ NP++ +LDE TS LD + V++ L++
Sbjct: 141 KDRV----STYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEG 196
Query: 394 TTIVV-AHRLSTVRDV-DTIMVLKNGQVVESGTHVDL 428
TI+V +H + V + D I ++ NG +VE+GT +L
Sbjct: 197 LTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 106/218 (48%), Gaps = 25/218 (11%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
I + ++ ++ G ++G +G+GK+T + ++ P SG V + G ++ +R+
Sbjct: 30 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRK 88
Query: 912 KIGLVQQEPALFSTTIYENIKYGN-------EDASEIELM--KATKAANAHGFISRMPEG 962
I + +E + + I+Y +SEIE M +AT+ A G
Sbjct: 89 LISYLPEEAGAYRN--MQGIEYLRFVAGFYASSSSEIEEMVERATEIA-----------G 135
Query: 963 YQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-ME 1021
+ DR S G +++ IARA++ NP + +LDE TS LD + +++ L + E
Sbjct: 136 LGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQE 195
Query: 1022 GRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQL 1058
G T ++ +H + + D+IA++ G + E G+ E+L
Sbjct: 196 GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 71.6 bits (174), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/223 (28%), Positives = 106/223 (47%), Gaps = 23/223 (10%)
Query: 215 YPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSL 274
Y + + +++ + +G+ A +GP+G+GKST++ ++ P+ G+ L G +L S
Sbjct: 19 YHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSW 78
Query: 275 QLKWLREQMGLVSQEPAL-FATSIANNILLGKE--DASMDRVIEAAKAANAHSFVEGLPD 331
Q K L ++ Q L F S++ I +G+ S DR +A + A + L
Sbjct: 79 QPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDR--QALQQVMAQTDCLALAQ 136
Query: 332 -GYQTQVGEGGTQLSGGQKQRIAIARAVLR------NPKILLLDEATSALDAESELIVQR 384
Y+ LSGG++QR+ +AR + + P+ L LDE TSALD + R
Sbjct: 137 RDYRV--------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLR 188
Query: 385 ALEKIMSNRTTIV--VAHRLS-TVRDVDTIMVLKNGQVVESGT 424
L ++ V V H L+ D IM+L G++V GT
Sbjct: 189 LLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231
Score = 70.1 bits (170), Expect = 6e-12, Method: Composition-based stats.
Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 19/240 (7%)
Query: 852 IFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRR 911
+ +++L +++G +A++G +G+GKST++ L+ + P G + G ++ + ++L R
Sbjct: 26 LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALAR 85
Query: 912 KIGLVQQEPAL-FSTTIYENIKYGNEDASEIELMKATKAANAH-GFISRMPEGYQSHVGD 969
+++Q L F ++ E I+ G + +A + A ++ Y+
Sbjct: 86 TRAVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRV---- 141
Query: 970 RGVQLSGGQKQRVAIARAILK------NPSILLLDEATSALDTASENLIQEALDKL--ME 1021
LSGG++QRV +AR + + P L LDE TSALD + L +L E
Sbjct: 142 ----LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQE 197
Query: 1022 GRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPEA 1080
V H L+ AD+I +L QGK+ G+ E++L E L ++PE+
Sbjct: 198 PLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNAETLTQWYQADLGVSRHPES 257
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 70.1 bits (170), Expect = 7e-12, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
+ ++ SV+ G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 283 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 327
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 386
L Y + GE LSGGQ + + I RA++ NPK++++DE + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 387 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 64.7 bits (156), Expect = 3e-10, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
+ +++ V+ G ++G +GSGKST+I+++ F G V + DI L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 913 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 964
G+V+ Q P L T+ EN+ G E+ N+ + +P+ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIG-------EICPGESPLNSLFYKKWIPKEEEMVEKA 134
Query: 965 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1013
SH+ DR +LSGGQ + V I RA++ NP ++++DE + + + ++
Sbjct: 135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
L+ +G T +++ HRL + N D + V+ G++ G E+ ++
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 69.7 bits (169), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 29/219 (13%)
Query: 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-RKIGLVQ 917
+V AG L +VG +G+GKST+++ M G++ G + + L + L Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 918 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977
Q+ F+T ++ + D + EL+ A A +G QLSGG
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGG 130
Query: 978 QKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM-----EGRTT 1025
+ QRV +A +L+ NP+ +LLLD+ ++LD A Q ALDK++ +G
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQQGLAI 186
Query: 1026 IMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+M +H L+ T+R+A + +L+ GK+ G E++L N
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 33/221 (14%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 283
L+ V AG+ VGP+G+GKST+++ R+ TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 284 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 343 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 395
QLSGG+ QR+ +A VL+ NP ++LLLD+ ++LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQ----QSALDKILSALSQ 181
Query: 396 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
++ +H L+ T+R +LK G+++ SG ++++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 288
+ G+ VGP+G GK+T + M+ + EPT GK+ D V+
Sbjct: 378 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 421
Query: 289 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 340
+P + LL K D+S N++ + G+ D Y V
Sbjct: 422 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 469
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 398
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +M + +T +VV
Sbjct: 470 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 528
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTH 425
H + + V +++ G E G H
Sbjct: 529 EHDVLMIDYVSDRLIVFEG---EPGRH 552
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 49/228 (21%)
Query: 841 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900
SFK V P ++ G + +VG +G GK+T + ++ +P G V D
Sbjct: 369 SFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--- 416
Query: 901 IRTLNLRSLRRKIGLVQQEPALFSTTIYE-----NIKYGNEDASEIELMKATKAANAHGF 955
++ K ++ E + T+YE + N + + EL+K + +
Sbjct: 417 ------LTVAYKPQYIKAE---YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-- 465
Query: 956 ISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
DR V+ LSGG+ QRVAIA +L++ I LLDE ++ LD +
Sbjct: 466 -------------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512
Query: 1015 ALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
A+ LME +T ++V H + I +D++ V + E G H + L
Sbjct: 513 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE----GEPGRHGRAL 556
Score = 47.0 bits (110), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 401
QLSGG+ QR+AIA A+LR DE +S LD L V R + ++ + + +VV H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 402 LSTV 405
L+ +
Sbjct: 288 LAVL 291
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1031
QLSGG+ QRVAIA A+L+ DE +S LD + + +L EG+ ++V H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 1032 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1077
L+ + + + G+ G + NGI + L +D+N
Sbjct: 288 LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 333
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 106/219 (48%), Gaps = 29/219 (13%)
Query: 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLR-RKIGLVQ 917
+V AG L +VG +G+GKST+++ M G++ G + + L + L Q
Sbjct: 22 EVRAGEILHLVGPNGAGKSTLLA-RMAGMTSGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
Query: 918 QEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQLSGG 977
Q+ F+T ++ + D + EL+ A A +G QLSGG
Sbjct: 81 QQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTNQLSGG 130
Query: 978 QKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM-----EGRTT 1025
+ QRV +A +L+ NP+ +LLLD+ +LD A Q ALDK++ +G
Sbjct: 131 EWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQQGLAI 186
Query: 1026 IMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+M +H L+ T+R+A + +L+ GK+ G E++L N
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 225
Score = 64.3 bits (155), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 109/221 (49%), Gaps = 33/221 (14%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 283
L+ V AG+ VGP+G+GKST+++ R+ TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RMAGMTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 284 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 343 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 395
QLSGG+ QR+ +A VL+ NP ++LLLD+ +LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQ----QSALDKILSALSQ 181
Query: 396 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
++ +H L+ T+R +LK G+++ SG ++++
Sbjct: 182 QGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 60/207 (28%), Positives = 92/207 (44%), Gaps = 42/207 (20%)
Query: 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 288
+ G+ VGP+G GK+T + M+ + EPT GK+ D V+
Sbjct: 364 EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL----------------TVAY 407
Query: 289 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 340
+P + LL K D+S N++ + G+ D Y V
Sbjct: 408 KPQYIKAEYEGTVYELLSKIDSS---------KLNSNFYKTELLKPLGIIDLYDRNV--- 455
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 398
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ +M + +T +VV
Sbjct: 456 -EDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVV 514
Query: 399 AHRLSTVRDVDTIMVLKNGQVVESGTH 425
H + + V +++ G E G H
Sbjct: 515 EHDVLMIDYVSDRLIVFEG---EPGRH 538
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 60/228 (26%), Positives = 100/228 (43%), Gaps = 49/228 (21%)
Query: 841 SFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYD 900
SFK V P ++ G + +VG +G GK+T + ++ +P G V D
Sbjct: 355 SFKLEVEPG---------EIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD--- 402
Query: 901 IRTLNLRSLRRKIGLVQQEPALFSTTIYE-----NIKYGNEDASEIELMKATKAANAHGF 955
++ K ++ E + T+YE + N + + EL+K + +
Sbjct: 403 ------LTVAYKPQYIKAE---YEGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLY-- 451
Query: 956 ISRMPEGYQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQE 1014
DR V+ LSGG+ QRVAIA +L++ I LLDE ++ LD +
Sbjct: 452 -------------DRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 498
Query: 1015 ALDKLMEG--RTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLL 1059
A+ LME +T ++V H + I +D++ V + E G H + L
Sbjct: 499 AIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE----GEPGRHGRAL 542
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHR 401
QLSGG+ QR+AIA A+LR DE +S LD L V R + ++ + + +VV H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 402 LSTV 405
L+ +
Sbjct: 274 LAVL 277
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 51/106 (48%), Gaps = 1/106 (0%)
Query: 973 QLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM-EGRTTIMVAHR 1031
QLSGG+ QRVAIA A+L+ DE +S LD + + +L EG+ ++V H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 1032 LSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1077
L+ + + + G+ G + NGI + L +D+N
Sbjct: 274 LAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDEN 319
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 55/218 (25%), Positives = 105/218 (48%), Gaps = 22/218 (10%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
+ ++ SV+ G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 283 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 327
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 386
L Y + GE LSGGQ + + I RA++ NPK++++D+ + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 387 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 63.2 bits (152), Expect = 7e-10, Method: Composition-based stats.
Identities = 57/228 (25%), Positives = 108/228 (47%), Gaps = 28/228 (12%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
+ +++ V+ G ++G +GSGKST+I+++ F G V + DI L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 913 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 964
G+V+ Q P L T+ EN+ G + E L N+ + +P+ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL-------NSLFYKKWIPKEEEMVEKA 134
Query: 965 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1013
SH+ DR +LSGGQ + V I RA++ NP ++++D+ + + + ++
Sbjct: 135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFN 194
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
L+ +G T +++ HRL + N D + V+ G++ G E+ ++
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 56/218 (25%), Positives = 104/218 (47%), Gaps = 22/218 (10%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
+ ++ SV G +GP+GSGKST+I+++ + G++ + D+ + + L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 283 MGLVS--QEP-ALFATSIANNILLGK---EDASMDRVIEAAKAANAHSFVE--------- 327
G+V Q P L ++ N+L+G+ ++ ++ + VE
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSAL-DAESELIVQRAL 386
L Y + GE LSGGQ + + I RA++ NPK++++DE + + + I L
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 387 EKIMSNRTTIVVAHRLSTVRD-VDTIMVLKNGQVVESG 423
E T +++ HRL V + +D + V+ NGQ++ G
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235
Score = 64.3 bits (155), Expect = 3e-10, Method: Composition-based stats.
Identities = 58/228 (25%), Positives = 107/228 (46%), Gaps = 28/228 (12%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
+ +++ V G ++G +GSGKST+I+++ F G V + DI L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYH- 81
Query: 913 IGLVQ--QEP-ALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ----- 964
G+V+ Q P L T+ EN+ G + E L N+ + +P+ +
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPL-------NSLFYKKWIPKEEEMVEKA 134
Query: 965 ---------SHVGDRGV-QLSGGQKQRVAIARAILKNPSILLLDEATSALDTA-SENLIQ 1013
SH+ DR +LSGGQ + V I RA++ NP ++++DE + + + ++
Sbjct: 135 FKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFN 194
Query: 1014 EALDKLMEGRTTIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSHEQLLR 1060
L+ +G T +++ HRL + N D + V+ G++ G E+ ++
Sbjct: 195 HVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 67.4 bits (163), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 9/217 (4%)
Query: 850 ITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSL 909
I + ++LKV G+ + ++G +G+GK+T +S + G ++ +G DI +
Sbjct: 19 IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Query: 910 RRK-IGLVQQEPALFST-TIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHV 967
R I LV + +F T+YEN+ G + + E +K + S P + +
Sbjct: 79 NRXGIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKR----DLEWIFSLFPR-LKERL 133
Query: 968 GDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIM 1027
G LSGG++Q +AI RA+ P +L DE + L + + E + K+ + TTI+
Sbjct: 134 KQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTIL 193
Query: 1028 VAHR--LSTIRNADKIAVLQQGKVAEIGSHEQLLRKE 1062
+ + L ++ A VL+ G++ G +LL E
Sbjct: 194 LVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
Score = 59.7 bits (143), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 17/216 (7%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWL-RE 281
+ ++ V G+ +G +G+GK+T +S + L GKI+ +G D+ + + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 282 QMGLVSQEPALFAT-SIANNILLG----KEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
+ LV + +F ++ N+ G K+ + R +E ++ L + +
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKEGIKRDLE---------WIFSLFPRLKER 132
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 396
+ + G LSGG++Q +AI RA+ PK+L DE + L V ++KI TTI
Sbjct: 133 LKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQKINQEGTTI 192
Query: 397 VVAHR--LSTVRDVDTIMVLKNGQVVESGTHVDLIS 430
++ + L ++ VL+ GQ+V G +L+
Sbjct: 193 LLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/182 (30%), Positives = 82/182 (45%), Gaps = 39/182 (21%)
Query: 229 SVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLVSQ 288
+ G+ VGP+G GK+T + + + EPT GKI D V+
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWDL----------------TVAY 351
Query: 289 EPALFATSIANNI--LLGKEDASMDRVIEAAKAANAHSFVE------GLPDGYQTQVGEG 340
+P + LL K DAS N++ + G+ D Y +V E
Sbjct: 352 KPQYIKADYEGTVYELLSKIDAS---------KLNSNFYKTELLKPLGIIDLYDREVNE- 401
Query: 341 GTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVV 398
LSGG+ QR+AIA +LR+ I LLDE ++ LD E L V RA+ + + +T +VV
Sbjct: 402 ---LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVV 458
Query: 399 AH 400
H
Sbjct: 459 EH 460
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 100/237 (42%), Gaps = 36/237 (15%)
Query: 860 VSAGRSLAVVGQSGSGKSTVISLVMRFYDP-ISGTVLIDGYD--IRTLNLRSLRR----- 911
V G + +VG +G+GKST + ++ P + G D +D IR L+
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDN--DSWDGVIRAFRGNELQNYFEKL 101
Query: 912 ---------KIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEG 962
K V P + E +K +E E++KA + N
Sbjct: 102 KNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELEN----------- 150
Query: 963 YQSHVGDRGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKL-M 1020
V +R +Q LSGG+ QRVAIA A+L+N + DE +S LD A+ +L
Sbjct: 151 ----VLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE 206
Query: 1021 EGRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKN 1077
EG++ ++V H L+ + I + G+ G Q NGI + L +D+N
Sbjct: 207 EGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDEN 263
Score = 50.1 bits (118), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 91/196 (46%), Gaps = 12/196 (6%)
Query: 230 VDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDG--HDLKSLQLKWLREQMGL 285
V G VGP+G+GKST + ++ Q + DG + +L+ E++
Sbjct: 44 VKEGXVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKN 103
Query: 286 VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ-VGEGGTQ- 343
P + + L+ K A +VIE K A+ +E + + + V E Q
Sbjct: 104 GEIRPVVKPQYVD---LIPK--AVKGKVIELLKKADETGKLEEVVKALELENVLEREIQH 158
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSN-RTTIVVAHRL 402
LSGG+ QR+AIA A+LRN DE +S LD L RA+ ++ ++ +VV H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 403 STVRDVDTIMVLKNGQ 418
+ + + I+ + G+
Sbjct: 219 AVLDYLSDIIHVVYGE 234
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 28/192 (14%)
Query: 859 KVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRKIGLVQQ 918
++ G + +VG +G GK+T + + +P G + D T+ + Q
Sbjct: 308 EIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD----LTVAYKP--------QY 355
Query: 919 EPALFSTTIYENIKYGNEDASEIEL-MKATKAANAHGFISRMPEGYQSHVGDRGV-QLSG 976
A + T+YE + DAS++ T+ G I + DR V +LSG
Sbjct: 356 IKADYEGTVYELL--SKIDASKLNSNFYKTELLKPLGIID---------LYDREVNELSG 404
Query: 977 GQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEG--RTTIMVAHRLST 1034
G+ QRVAIA +L++ I LLDE ++ LD + A+ L E +T ++V H +
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDVLX 464
Query: 1035 IRN-ADKIAVLQ 1045
I +D++ V +
Sbjct: 465 IDYVSDRLXVFE 476
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 66.2 bits (160), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR-RK 912
L+ +V AG L +VG +G+GKST L+ R S G++ G + + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
L QQ+ F+T ++ + D + EL+ A A +G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 973 QLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM----- 1020
QLSGG+ QRV +A +L+ NP+ +LLLDE ++LD A Q ALDK++
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQ 181
Query: 1021 EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+G + +H L+ T+R+A + +L+ GK G E++L N
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 63.5 bits (153), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 107/221 (48%), Gaps = 33/221 (14%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 283
L+ V AG+ VGP+G+GKST+++ R TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 284 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 343 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMSNRTT 395
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL+KI+S +
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALSQ 181
Query: 396 -----IVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ +H L+ T+R +LK G+ + SG ++++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 66.2 bits (160), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 33/224 (14%)
Query: 856 LNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPIS--GTVLIDGYDIRTLNLRSLR-RK 912
L+ +V AG L +VG +G+GKST L+ R S G++ G + + L +
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 913 IGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGV 972
L QQ+ F+T ++ + D + EL+ A A +G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 973 QLSGGQKQRVAIARAILK-----NPS--ILLLDEATSALDTASENLIQEALDKLM----- 1020
QLSGG+ QRV +A +L+ NP+ +LLLDE ++LD A Q ALDK++
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQ 181
Query: 1021 EGRTTIMVAHRLS-TIRNADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+G + +H L+ T+R+A + +L+ GK G E++L N
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPN 225
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 33/221 (14%)
Query: 226 LNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK--ILLDGHDLKSLQLKWLREQM 283
L+ V AG+ VGP+G+GKST+++ R TSGK I G L++ L
Sbjct: 19 LSGEVRAGEILHLVGPNGAGKSTLLA---RXAGXTSGKGSIQFAGQPLEAWSATKLALHR 75
Query: 284 GLVSQEPA-LFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGEGGT 342
+SQ+ FAT + + + L + D + ++ A A ++G
Sbjct: 76 AYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALA----------LDDKLGRSTN 125
Query: 343 QLSGGQKQRIAIARAVLR-----NP--KILLLDEATSALDAESELIVQRALEKIMS---- 391
QLSGG+ QR+ +A VL+ NP ++LLLDE ++LD Q AL+KI+S
Sbjct: 126 QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQ----QSALDKILSALCQ 181
Query: 392 -NRTTIVVAHRLS-TVRDVDTIMVLKNGQVVESGTHVDLIS 430
+ +H L+ T+R +LK G+ + SG ++++
Sbjct: 182 QGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLT 222
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 63/228 (27%), Positives = 111/228 (48%), Gaps = 18/228 (7%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQL-KW 278
+ + +N V G+ A +GP+G+GKST+ ++ Y G+ILLDG ++ L +
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 279 LREQMGLVSQEPA-LFATSIANNILLGKEDASMDRVIEAA----KAANAHSFVEGLPDGY 333
R+ + L Q P + +IAN + L + A + R + A K A ++
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQ-AKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 334 QTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-N 392
+ EG SGG+K+R I + ++ P +LDE S LD ++ +V R + + N
Sbjct: 137 SRYLNEG---FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPN 193
Query: 393 RTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG---THVDLISKGGEY 435
+V+ H R+ D + V+ +G+VV +G ++L +KG E+
Sbjct: 194 FGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEW 241
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 19/232 (8%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNLRS 908
TI + +NL V G A++G +G+GKST+ ++ Y G +L+DG +I L+
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 909 LRRK-IGLVQQEPALFSTTIYENI-------KYGNEDASEIELMKATKAANAHGFISRMP 960
RK + L Q P N K G E K KA +
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALE----LLDWD 132
Query: 961 EGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLM 1020
E Y S + G SGG+K+R I + ++ P+ +LDE S LD + ++ ++ +
Sbjct: 133 ESYLSRYLNEG--FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMR 190
Query: 1021 E---GRTTIMVAHRLSTIRNADKIAVLQQGKVAEIGSHEQLLRKENGIYKQL 1069
G I R+ DK+ V+ G+V G E L E Y+ L
Sbjct: 191 GPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYEWL 242
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 102/219 (46%), Gaps = 23/219 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 275
+ L+ V G+ A +GP+GSGKST+ + + + YE T G + G DL +L
Sbjct: 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 94
Query: 276 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
++ E G+ +Q F + N + + ++DR + ++
Sbjct: 95 AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLK 151
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
+P+ T+ G SGG+K+R I + + P++ +LDE+ S LD ++ +V +
Sbjct: 152 -MPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 208
Query: 388 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
+ R+ I+V H R+ D + VL G++V+SG
Sbjct: 209 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 247
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 906
D I L+L V G A++G +GSGKST+ + + Y+ GTV G D+ L+
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 907 RSLRRK-IGLVQQEPA--------LFSTTIYENIK--YGNEDASEIELMKATKAANAHGF 955
+ I + Q P F T ++ G E + + A
Sbjct: 92 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA--- 148
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
+ +MPE + + G SGG+K+R I + + P + +LDE+ S LD + ++ +
Sbjct: 149 LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 206
Query: 1016 LDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGS 1054
++ L +G R+ I+V H R+ D + VL QG++ + G
Sbjct: 207 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 23/219 (10%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMV--QRLYEPTSGKILLDGHDLKSLQ---- 275
+ L+ V G+ A +GP+GSGKST+ + + + YE T G + G DL +L
Sbjct: 16 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDR 75
Query: 276 --------LKWLREQMGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVE 327
++ E G+ +Q F + N + + ++DR + +
Sbjct: 76 AGEGIFMAFQYPVEIPGVSNQ---FFLQTALNAVRSYRGQETLDR-FDFQDLMEEKIALL 131
Query: 328 GLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALE 387
+P+ T+ G SGG+K+R I + + P++ +LDE+ S LD ++ +V +
Sbjct: 132 KMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVN 189
Query: 388 KIMS-NRTTIVVAH--RLSTVRDVDTIMVLKNGQVVESG 423
+ R+ I+V H R+ D + VL G++V+SG
Sbjct: 190 SLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228
Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 21/222 (9%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVM--RFYDPISGTVLIDGYDIRTLNL 906
D I L+L V G A++G +GSGKST+ + + Y+ GTV G D+ L+
Sbjct: 13 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 72
Query: 907 RSLRRK-IGLVQQEPA--------LFSTTIYENIK--YGNEDASEIELMKATKAANAHGF 955
+ I + Q P F T ++ G E + + A
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIA--- 129
Query: 956 ISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEA 1015
+ +MPE + + G SGG+K+R I + + P + +LDE+ S LD + ++ +
Sbjct: 130 LLKMPEDLLTRSVNVG--FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADG 187
Query: 1016 LDKLMEG-RTTIMVAH--RLSTIRNADKIAVLQQGKVAEIGS 1054
++ L +G R+ I+V H R+ D + VL QG++ + G
Sbjct: 188 VNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 107/236 (45%), Gaps = 38/236 (16%)
Query: 851 TIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTL--NLRS 908
TI + ++ +++ G + G +G+GK+T+++++ + SGTV + G + + +
Sbjct: 35 TILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 909 LRRKIGLVQQE-----------------PALFSTTIYENIKYGNEDASEIELMKATKAAN 951
+R+ IG V A S +Y++I + + L +A
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 952 AHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENL 1011
A +I GY LS G+KQRV IARA+ P +L+LDE + LD +
Sbjct: 155 AQQYI-----GY----------LSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARES 199
Query: 1012 IQEALDKLMEGRTT---IMVAHRLSTIR-NADKIAVLQQGKVAEIGSHEQLLRKEN 1063
+ LD L + T I V H + I N KI +L+ G+ + G+ E +L EN
Sbjct: 200 LLSILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSEN 255
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEP-TSGKILLDGHDLKSL--QLKW 278
+ + +++ + G + G +G+GK+T+++++ YEP TSG + L G + +
Sbjct: 36 ILKKISWQIAKGDKWILYGLNGAGKTTLLNIL-NAYEPATSGTVNLFGKXPGKVGYSAET 94
Query: 279 LREQMGLVSQ---EPALFATSIANNILLGK-EDASMDRVIEAAKAANAHSFVE--GLPDG 332
+R+ +G VS E + + ++ G + + + I+ AH ++ G
Sbjct: 95 VRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGXSAK 154
Query: 333 YQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD---AESELIVQRALEKI 389
Q +G LS G+KQR+ IARA+ P++L+LDE + LD ES L + +L
Sbjct: 155 AQQYIG----YLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLSILDSLSDS 210
Query: 390 MSNRTTIVVAHRLSTVR-DVDTIMVLKNGQVVESGTHVDLIS 430
I V H + + + I++LK+GQ ++ G D+++
Sbjct: 211 YPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 53.9 bits (128), Expect = 4e-07, Method: Composition-based stats.
Identities = 44/185 (23%), Positives = 97/185 (52%), Gaps = 22/185 (11%)
Query: 222 VFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLK--WL 279
V E + +++ G F GP+G GK+T++ + +P G+I+ +G + ++ K +L
Sbjct: 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFL 83
Query: 280 REQMGL---VSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQ 336
E++ + +S E L A + + + K + +++A ++ VE L + +
Sbjct: 84 PEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IMDALES------VEVL--DLKKK 130
Query: 337 VGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTI 396
+GE LS G +R+ +A +L N +I +LD+ A+D +S+ V +++ +I+ + +
Sbjct: 131 LGE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 186
Query: 397 VVAHR 401
+++ R
Sbjct: 187 IISSR 191
Score = 48.1 bits (113), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/203 (21%), Positives = 95/203 (46%), Gaps = 28/203 (13%)
Query: 835 IELRNVSFKYPVRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTV 894
+E+R++S Y D + E + + + G + G +G GK+T++ + + P+ G +
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 895 LIDGYDIRTLNLRSLRRKIGLVQQE---PALFSTTIYENIK---YGNEDASEIELMKATK 948
+ +G I ++ KI + +E P S Y YG + ++ E+M A +
Sbjct: 67 IYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNKNEIMDALE 120
Query: 949 AANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTAS 1008
+ ++ E LS G +RV +A +L N I +LD+ A+D S
Sbjct: 121 SVEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 1009 ENLIQEALDKLMEGRTTIMVAHR 1031
++ + +++ ++++ + ++++ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
>pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp-
Binding Protein (cbio-2), St1066
Length = 263
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 86/191 (45%), Gaps = 31/191 (16%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNLRSLRRK 912
EN+NL+V+ G + ++G +GSGK+T++ + P SG + I+G ++R +R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVR-----KIRNY 73
Query: 913 IGLVQQEPALFSTTI--------YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
I P + + YE +K + D +E++KA K +
Sbjct: 74 IRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLF-LEMLKALKLG-------------E 119
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
+ + +LS GQ V + A+ P I+ LDE +D A ++I + + G+
Sbjct: 120 EILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKE 177
Query: 1025 TIMVAHRLSTI 1035
I+V H L +
Sbjct: 178 GILVTHELDML 188
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 90/188 (47%), Gaps = 25/188 (13%)
Query: 223 FENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQ 282
EN+N V+ G+ +GP+GSGK+T++ + L P SG I ++G +++ ++ ++R
Sbjct: 21 LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIR-NYIRYS 77
Query: 283 MGLVSQEPALFATSIANNILLGKEDASMDRVIEAAKAANAHSFVEGLPDGYQTQVGE--- 339
L E ++ + + L +E +DR + F+E L ++GE
Sbjct: 78 TNL--PEAYEIGVTVNDIVYLYEELKGLDRDL----------FLEMLK---ALKLGEEIL 122
Query: 340 --GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIV 397
+LS GQ + + A+ P+I+ LDE +DA ++ R +++ + I+
Sbjct: 123 RRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKE--YGKEGIL 180
Query: 398 VAHRLSTV 405
V H L +
Sbjct: 181 VTHELDML 188
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG K ++A+ARA+L+N ILLLDE T+ LDT + + L+ G T+I ++H
Sbjct: 549 LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 39/174 (22%)
Query: 209 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268
E AY ++ ++ + + + GP+G GKST++ + +G++ DG
Sbjct: 439 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLMRAI------ANGQV--DG 488
Query: 269 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 321
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 489 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 535
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 536 ------GFTD---EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLD 580
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 5/68 (7%)
Query: 829 TEIKGNIELRNVSFKYP--VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
T+ K +++ N+ F+YP +P IT ++N + S +AV+G +G+GKST+I+++
Sbjct: 666 TKQKAIVKVTNMEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 887 YDPISGTV 894
P SG V
Sbjct: 723 LLPTSGEV 730
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 206 IEFSEVCFAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGK 263
++ + + F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG+
Sbjct: 672 VKVTNMEFQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGE 729
Query: 264 I 264
+
Sbjct: 730 V 730
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 3/81 (3%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 404 TVRDV-DTIMVLKNGQVVESG 423
+++ + + +K+G++ SG
Sbjct: 960 FTKNLTEEVWAVKDGRMTPSG 980
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 49/92 (53%), Gaps = 5/92 (5%)
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
SH RG LSGGQK ++ +A + P +++LDE T+ LD S + +AL + G
Sbjct: 895 SHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG-- 950
Query: 1025 TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055
I++ H +N +++ ++ G++ G +
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRMTPSGHN 982
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG K ++A+ARA+L+N ILLLDE T+ LDT + + L+ G T+I ++H
Sbjct: 549 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 603
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 39/174 (22%)
Query: 209 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268
E AY ++ ++ + + + GP+G GKST+ + +G++ DG
Sbjct: 439 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG 488
Query: 269 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 321
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 489 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 535
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 536 ------GFTD---EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 580
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 829 TEIKGNIELRNVSFKYP--VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
T+ K +++ N F+YP +P IT ++N + S +AV+G +G+GKST+I+++
Sbjct: 666 TKQKAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 722
Query: 887 YDPISGTV 894
P SG V
Sbjct: 723 LLPTSGEV 730
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 213 FAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG++
Sbjct: 679 FQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 902 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 959
Query: 404 TVRDV-DTIMVLKNGQVVESG 423
+++ + + +K+G+ SG
Sbjct: 960 FTKNLTEEVWAVKDGRXTPSG 980
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
SH RG LSGGQK ++ +A + P +++LDE T+ LD S + +AL + G
Sbjct: 895 SHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG-- 950
Query: 1025 TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055
I++ H +N +++ ++ G+ G +
Sbjct: 951 VIIITHSAEFTKNLTEEVWAVKDGRXTPSGHN 982
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 974 LSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRTTIMVAH 1030
LSGG K ++A+ARA+L+N ILLLDE T+ LDT + + L+ G T+I ++H
Sbjct: 543 LSGGWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTC--GITSITISH 597
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 76/174 (43%), Gaps = 39/174 (22%)
Query: 209 SEVCFAYPSRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDG 268
E AY ++ ++ + + + GP+G GKST+ + +G++ DG
Sbjct: 433 CEFSLAYGAK--ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAI------ANGQV--DG 482
Query: 269 HDLKSLQLKWLREQMGLVSQEPALFATSIANNIL-------LGKEDASMDRVIEAAKAAN 321
+ E+ V E + T ++L +G ++A D++IE
Sbjct: 483 FPTQ--------EECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEAIKDKLIEF----- 529
Query: 322 AHSFVEGLPDGYQTQVGEGGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALD 375
G D + + LSGG K ++A+ARAVLRN ILLLDE T+ LD
Sbjct: 530 ------GFTD---EXIAXPISALSGGWKXKLALARAVLRNADILLLDEPTNHLD 574
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%), Gaps = 5/68 (7%)
Query: 829 TEIKGNIELRNVSFKYP--VRPDITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRF 886
T+ K +++ N F+YP +P IT ++N + S +AV+G +G+GKST+I+++
Sbjct: 660 TKQKAIVKVTNXEFQYPGTSKPQIT---DINFQCSLSSRIAVIGPNGAGKSTLINVLTGE 716
Query: 887 YDPISGTV 894
P SG V
Sbjct: 717 LLPTSGEV 724
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 213 FAYP--SRPHMVFENLNFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKI 264
F YP S+P + ++NF A +GP+G+GKST+I+++ PTSG++
Sbjct: 673 FQYPGTSKPQIT--DINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 724
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 46/81 (56%), Gaps = 3/81 (3%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRLS 403
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL++ I++ H
Sbjct: 896 LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG--VIIITHSAE 953
Query: 404 TVRDV-DTIMVLKNGQVVESG 423
+++ + + +K+G+ SG
Sbjct: 954 FTKNLTEEVWAVKDGRXTPSG 974
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 48/92 (52%), Gaps = 5/92 (5%)
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
SH RG LSGGQK ++ +A + P +++LDE T+ LD S + +AL + G
Sbjct: 889 SHSRIRG--LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGG-- 944
Query: 1025 TIMVAHRLSTIRN-ADKIAVLQQGKVAEIGSH 1055
I++ H +N +++ ++ G+ G +
Sbjct: 945 VIIITHSAEFTKNLTEEVWAVKDGRXTPSGHN 976
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 38/200 (19%)
Query: 227 NFSVDAGKTFAFVGPSGSGKSTIISMVQRLYEPTSGKILLDGHDLKSLQLKWLREQMGLV 286
N G+ +GP+G GK+T ++ G+I D + + ++
Sbjct: 288 NGEAKEGEIIGILGPNGIGKTTFARIL-------VGEITADEGSVTP--------EKQIL 332
Query: 287 SQEPALFATSIANNILLGKEDASMDRVI-------EAAKAANAHSFVEGLPDGYQTQVGE 339
S +P + + E+AS D + E K N H +E
Sbjct: 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLES----------- 381
Query: 340 GGTQLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNR--TTIV 397
LSGG+ Q++ IA + + + +LD+ +S LD E IV +A++++ R T +
Sbjct: 382 NVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFI 441
Query: 398 VAHRLSTVRD--VDTIMVLK 415
+ H LS + D D I+V K
Sbjct: 442 IDHDLS-IHDYIADRIIVFK 460
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 36/59 (61%)
Query: 344 LSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVAHRL 402
LSGG QR+ +A ++LR + + D+ +S LD + + +A+ +++ N+ IVV H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDL 197
Score = 39.3 bits (90), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 54/105 (51%), Gaps = 16/105 (15%)
Query: 945 KATKAANAHGFISRMPEGYQSHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSAL 1004
+ TK N H + +S+V D LSGG+ Q++ IA + K + +LD+ +S L
Sbjct: 368 EVTKRLNLHRLL-------ESNVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYL 416
Query: 1005 DTASENLIQEALDKLMEGR--TTIMVAHRLSTIRN--ADKIAVLQ 1045
D ++ +A+ ++ R T ++ H LS I + AD+I V +
Sbjct: 417 DVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFK 460
Score = 38.9 bits (89), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 39/188 (20%)
Query: 866 LAVVGQSGSGKSTVISL-----VMRFYDPIS------------GTVLIDGYDIRTLNLRS 908
L V+G++G GK+TV+ + + F DP S G + + + N
Sbjct: 28 LGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELK 87
Query: 909 LRRKIGLVQQEPALFSTTIYENI----KYGNEDASEIELMKATKAANAHGFISRMPEGYQ 964
+ KI V+ T+ E + + G +D + EL+ T N I
Sbjct: 88 IVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVK-ELLNMTNLWNKDANI-------- 138
Query: 965 SHVGDRGVQLSGGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDKLMEGRT 1024
LSGG QR+ +A ++L+ + + D+ +S LD + +A+ +L++ +
Sbjct: 139 ---------LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKY 189
Query: 1025 TIMVAHRL 1032
I+V H L
Sbjct: 190 VIVVDHDL 197
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 57/112 (50%), Gaps = 10/112 (8%)
Query: 336 QVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEKIM-S 391
++G+ T+LSGG+ QRI +A + R+ + + +LDE T+ L +QR L K++ +
Sbjct: 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA 782
Query: 392 NRTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGTHVDLISKGGEYAA 437
T I V H++ V D ++ + G++V GT ++ G A
Sbjct: 783 GNTVIAVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSVTA 834
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 4/79 (5%)
Query: 967 VGDRGVQLSGGQKQRVAIA---RAILKNPSILLLDEATSALDTASENLIQEALDKLME-G 1022
+G +LSGG+ QR+ +A R + ++ +LDE T+ L A +Q L KL++ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 1023 RTTIMVAHRLSTIRNADKI 1041
T I V H++ + +D +
Sbjct: 784 NTVIAVEHKMQVVAASDWV 802
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 51/102 (50%), Gaps = 10/102 (9%)
Query: 967 VGDRGVQLSGGQKQRVAIARAILKNPS---ILLLDEATSALDTASENLIQEALDKLME-G 1022
+G LSGG+ QR+ +A + K + + +LDE T L + E L +L++ G
Sbjct: 799 LGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRG 858
Query: 1023 RTTIMVAHRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1058
T I++ H L I+NAD I L + G + G+ E++
Sbjct: 859 NTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEI 900
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSALDAESELIVQRALEK 388
GY ++G+ T LSGG+ QRI +A + + + +LDE T L E + L +
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 389 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 424
++ T IV+ H L +++ D I+ L + G +V +GT
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGT 896
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 974 LSGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1030
LSGG+ QR+ +A I + I +LDE T L + + L KL + G T I+V H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 1031 RLSTIRNADKI 1041
IRNAD I
Sbjct: 525 DEEVIRNADHI 535
Score = 33.1 bits (74), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%), Gaps = 3/74 (4%)
Query: 342 TQLSGGQKQRIAIARAVLRNPK--ILLLDEATSALDAESELIVQRALEKIMS-NRTTIVV 398
T LSGG+ QRI +A + I +LDE T L + + L+K+ T IVV
Sbjct: 463 TTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522
Query: 399 AHRLSTVRDVDTIM 412
H +R+ D I+
Sbjct: 523 EHDEEVIRNADHII 536
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 388
GY ++G+ T LSGG+ QR+ +A + R + +LDE T+ L + + L +
Sbjct: 835 GYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 389 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 424
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNP---SILLLDEATSALDTASENLIQEALDK 1018
GY +G LSGG+ QRV +A + + ++ +LDE T+ L + + L +
Sbjct: 835 GYMK-LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1019 LME-GRTTIMVAHRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1058
L++ G T +++ H L I+ AD I L + G++ +G+ E++
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 32.0 bits (71), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 974 LSGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1030
LSGG+ QR+ +A I + + +LDE + L + + L + + G T I+V H
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 564
Query: 1031 RLSTIRNADKI------AVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
T+ AD + A + G+V G+ E+++ N + Q +
Sbjct: 565 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 610
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
+N+++K+ G +AV G SGSGKST+++ V+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLRNPK---ILLLDEATSALDAESELIVQRALEK 388
GY ++G+ T LSGG+ QR+ +A + R + +LDE T+ L + + L +
Sbjct: 835 GY-XKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 389 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 424
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 936
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNP---SILLLDEATSALDTASENLIQEALDK 1018
GY +G LSGG+ QRV +A + + ++ +LDE T+ L + + L +
Sbjct: 835 GYXK-LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 893
Query: 1019 LME-GRTTIMVAHRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1058
L++ G T +++ H L I+ AD I L + G++ +G+ E++
Sbjct: 894 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 940
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
+N+++K+ G +AV G SGSGKST+++ V+
Sbjct: 640 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 332 GYQTQVGEGGTQLSGGQKQRIAIARAVLR--NPKIL-LLDEATSALDAESELIVQRALEK 388
GY ++G+ T LSGG+ QR+ +A + R N + L +LDE T+ L + + L +
Sbjct: 533 GYM-KLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 389 IMSN-RTTIVVAHRLSTVRDVDTIMVL------KNGQVVESGT 424
++ N T +V+ H L ++ D I+ L + GQ+V GT
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGT 634
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Query: 962 GYQSHVGDRGVQLSGGQKQRVAIARAILKNP---SILLLDEATSALDTASENLIQEALDK 1018
GY +G LSGG+ QRV +A + + ++ +LDE T+ L + + L +
Sbjct: 533 GYMK-LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR 591
Query: 1019 LME-GRTTIMVAHRLSTIRNADKIAVL------QQGKVAEIGSHEQL 1058
L++ G T +++ H L I+ AD I L + G++ +G+ E++
Sbjct: 592 LVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEV 638
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 974 LSGGQKQRVAIARAILKNPS--ILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1030
LSGG+ QR+ +A I + + +LDE + L + + L + + G T I+V H
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262
Query: 1031 RLSTIRNADKI------AVLQQGKVAEIGSHEQLLRKENGIYKQLI 1070
T+ AD + A + G+V G+ E+++ N + Q +
Sbjct: 263 DEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYL 308
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 853 FENLNLKVSAGRSLAVVGQSGSGKSTVISLVM 884
+N+++K+ G +AV G SGSGKST+++ V+
Sbjct: 338 LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 369
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 47/228 (20%)
Query: 866 LAVVGQSGSGKSTVISLVMRFYDPISGTVLID-GYDIRTLNLRSLRRKI-----GLVQQE 919
L ++G++G+GK+T+I L ++G + D G DI LN+ +KI G V+Q
Sbjct: 381 LVMMGENGTGKTTLIKL-------LAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQ- 432
Query: 920 PALFSTTI---YENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQSHVGDRGVQ-LS 975
LF I + N ++ + +++K + + + D+ VQ LS
Sbjct: 433 --LFFKKIRGQFLNPQF------QTDVVKPLRIDD---------------IIDQEVQHLS 469
Query: 976 GGQKQRVAIARAILKNPSILLLDEATSALDTASENLIQEALDK--LMEGRTTIMVAHR-L 1032
GG+ QRVAI A+ I L+DE ++ LD+ + + + + L +T +V H +
Sbjct: 470 GGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI 529
Query: 1033 STIRNADKIAVLQ--QGKVAEIGSHEQLLRKENGIYKQL-IRLQQDKN 1077
ADK+ V + K A + E LL N K L + ++D N
Sbjct: 530 MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTFRRDPN 577
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIM--SNRTTIVVAH 400
LSGG+ QR+AI A+ I L+DE ++ LD+E +I + + + + + +T +V H
Sbjct: 467 HLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Score = 36.6 bits (83), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 343 QLSGGQKQRIAIARAVLRNPKILLLDEATSALDAESELIVQRALEKIMS-NRTTIVVAHR 401
+LSGG+ QR AI + ++ + + DE +S LD + L + + +++ + I V H
Sbjct: 221 KLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHD 280
Query: 402 LSTV 405
LS +
Sbjct: 281 LSVL 284
Score = 36.6 bits (83), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 80/188 (42%), Gaps = 19/188 (10%)
Query: 862 AGRSLAVVGQSGSGKSTVISLVM--------RFYDPISGTVLID---GYDIRTLNLRSLR 910
G+ L +VG +G GKST + ++ RF DP +I G +++ + L
Sbjct: 102 PGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLE 161
Query: 911 RKIGLVQQEPALFSTTIYENIKYGNEDASEIELMKATKAANAHGFISRMPEGYQ-SHVGD 969
I + + + I IK + E+ ++ K+ + R + Q +V
Sbjct: 162 DDIKAIIK--PQYVDNIPRAIKGPVQKVGELLKLRMEKSPED---VKRYIKILQLENVLK 216
Query: 970 RGVQ-LSGGQKQRVAIARAILKNPSILLLDEATSALDTASE-NLIQEALDKLMEGRTTIM 1027
R ++ LSGG+ QR AI + ++ + + DE +S LD N Q L + I
Sbjct: 217 RDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVIC 276
Query: 1028 VAHRLSTI 1035
V H LS +
Sbjct: 277 VEHDLSVL 284
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 9/101 (8%)
Query: 974 LSGGQKQRVAIARAILKN--PSILLLDEATSALDTASENLIQEALDKLME-GRTTIMVAH 1030
LSGG+ QR+ +A I + +LDE + L + E L +L + G T I+V H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 1031 RLSTIRNADKIAVL------QQGKVAEIGSHEQLLRKENGI 1065
TI +AD I + G++ G +++LLR ++ I
Sbjct: 582 DEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSI 622
Score = 37.0 bits (84), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 41/75 (54%), Gaps = 10/75 (13%)
Query: 974 LSGGQKQRVAIARAILKNP---SILLLDEATSAL--DTASE--NLIQEALDKLMEGRTTI 1026
LSGG+ QRV +A + K ++ +LDE T+ L D + N+I +DK G T I
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDK---GNTVI 920
Query: 1027 MVAHRLSTIRNADKI 1041
++ H L I+ +D I
Sbjct: 921 VIEHNLDVIKTSDWI 935
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 12/104 (11%)
Query: 320 ANAHSFVEGLPD---GYQTQVGEGGTQLSGGQKQRIAIARAVLRNP---KILLLDEATSA 373
A H ++ L D GY ++G+ LSGG+ QR+ +A + + + +LDE T+
Sbjct: 838 AGVHRYLRTLVDVGLGY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTG 896
Query: 374 L---DAESELIVQRALEKIMSNRTTIVVAHRLSTVRDVDTIMVL 414
L D L V L + T IV+ H L ++ D I+ L
Sbjct: 897 LHFDDIRKLLNVINGL--VDKGNTVIVIEHNLDVIKTSDWIIDL 938
>pdb|3AUX|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|A Chain A, Crystal Structure Of Rad50 Bound To Adp
pdb|3AUY|B Chain B, Crystal Structure Of Rad50 Bound To Adp
pdb|3AV0|B Chain B, Crystal Structure Of Mre11-Rad50 Bound To Atp S
Length = 371
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 340 GGTQLSGGQKQRIAIARAVLRNP-KILLLDEATSALDAESELIVQRALEKIMSNRTTIVV 398
GG Q++ R+AIA A++ N + ++LDE T LD + K+ S I++
Sbjct: 283 GGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIII 342
Query: 399 AH--RLSTVRDVDTIMVLKNGQV 419
H L V DV I V K+G V
Sbjct: 343 THHRELEDVADV-IINVKKDGNV 364
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 33.5 bits (75), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 960 PEGYQSHVGDRGVQLSGGQKQRV----AIARAILKNPSILLLDEATSALDTASENLIQEA 1015
P+G Q +RGV++ R+ + L+ + L+LDEA LD E I++
Sbjct: 155 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 214
Query: 1016 LDKLMEGRTTIM 1027
+D++ R T+M
Sbjct: 215 VDQIRPDRQTLM 226
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 33.5 bits (75), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 960 PEGYQSHVGDRGVQLSGGQKQRV----AIARAILKNPSILLLDEATSALDTASENLIQEA 1015
P+G Q +RGV++ R+ + L+ + L+LDEA LD E I++
Sbjct: 141 PKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDMGFEPQIRKI 200
Query: 1016 LDKLMEGRTTIM 1027
+D++ R T+M
Sbjct: 201 VDQIRPDRQTLM 212
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Query: 344 LSGGQKQRIAIARAV----LRNPKILLLDEATSALDAESELIVQRALEKIMSNRTTIVVA 399
LSGG++ AIA +R +LDE +ALD + + L+K S+ IV+
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 400 HRLSTVRDVDTI 411
HR T+ + D +
Sbjct: 389 HRKGTMEEADVL 400
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 6/85 (7%)
Query: 974 LSGGQKQRVAIAR--AILKNPSI--LLLDEATSALDTASENLIQEALDKLMEGRTTIMVA 1029
LSGG++ AIA +ILK + +LDE +ALD A+ + L K I++
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 1030 HRLSTIRNADKI--AVLQQGKVAEI 1052
HR T+ AD + +Q+ V+++
Sbjct: 389 HRKGTMEEADVLYGVTMQESGVSKV 413
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 31/98 (31%)
Query: 224 ENLNFSVDAGKTF-AFVGPSGSGKSTIISMV-QRLYE-------------PTSG---KIL 265
ENL F +A F F GP GSGK+T+I+ V RL + PT KI+
Sbjct: 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIV 75
Query: 266 LDGHDLKSLQLKWLREQMGLVSQEPALFATSIANNILL 303
L+G+D+ + E LFA S +++L
Sbjct: 76 LEGNDMD-------------IRTEAMLFAASRREHLVL 100
>pdb|2H7G|X Chain X, Structure Of Variola Topoisomerase Non-Covalently Bound To
Dna
pdb|3IGC|A Chain A, Smallpox Virus Topoisomerase-Dna Transition State
Length = 314
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 1039 DKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPE 1079
DKI + GK + SHE ++ K N +YK L++L D +PE
Sbjct: 158 DKIVIKFVGK--DKVSHEFVVHKSNRLYKPLLKLTDDSSPE 196
>pdb|2H7F|X Chain X, Structure Of Variola Topoisomerase Covalently Bound To Dna
Length = 314
Score = 32.0 bits (71), Expect = 2.1, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 1039 DKIAVLQQGKVAEIGSHEQLLRKENGIYKQLIRLQQDKNPE 1079
DKI + GK + SHE ++ K N +YK L++L D +PE
Sbjct: 158 DKIVIKFVGK--DKVSHEFVVHKSNRLYKPLLKLTDDSSPE 196
>pdb|1A41|A Chain A, Type 1-Topoisomerase Catalytic Fragment From Vaccinia Virus
Length = 234
Score = 30.8 bits (68), Expect = 4.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 1054 SHEQLLRKENGIYKQLIRLQQDKNPE 1079
SHE ++ K N +YK L++L D +PE
Sbjct: 91 SHEFVVHKSNRLYKPLLKLTDDSSPE 116
>pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
pdb|4F4J|B Chain B, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic
Spindle Orienting Protein By A Single Mutation That
Inhibits Gmp- Induced Closing
Length = 202
Score = 30.4 bits (67), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 849 DITIFENLNLKVSAGRSLAVVGQSGSGKSTVISLVMRFY 887
DI ENL + S R + + G SG+GKST++ + Y
Sbjct: 3 DIPTTENLYFQGSMSRPIVISGPSGTGKSTLLKKLFAEY 41
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 30.0 bits (66), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 862 AGRSLAVVGQSGSGKSTVISLVMRFYDPISGTVLIDGYDIRTLNL-------RSLRRKIG 914
AGR++ + GQ G+GK+ + + + P + I G +I +L + ++ RR IG
Sbjct: 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIG 128
Query: 915 LVQQEPALFSTTIYE 929
+ + A+ + +++E
Sbjct: 129 VRIKAGAVHTVSLHE 143
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,450,528
Number of Sequences: 62578
Number of extensions: 1026275
Number of successful extensions: 3602
Number of sequences better than 100.0: 124
Number of HSP's better than 100.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2996
Number of HSP's gapped (non-prelim): 346
length of query: 1082
length of database: 14,973,337
effective HSP length: 109
effective length of query: 973
effective length of database: 8,152,335
effective search space: 7932221955
effective search space used: 7932221955
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)