Query 001413
Match_columns 1082
No_of_seqs 421 out of 2000
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 00:11:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/001413.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/001413hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02638 cellulose synthase A 100.0 5E-318 1E-322 2818.8 84.1 1071 10-1082 7-1079(1079)
2 PLN02400 cellulose synthase 100.0 2E-317 5E-322 2813.9 81.6 1052 10-1082 26-1085(1085)
3 PLN02436 cellulose synthase A 100.0 9E-314 2E-318 2771.5 83.6 1056 10-1082 26-1093(1094)
4 PLN02915 cellulose synthase A 100.0 4E-300 9E-305 2657.0 79.7 1005 16-1082 11-1044(1044)
5 PLN02189 cellulose synthase 100.0 2E-296 5E-301 2623.9 80.7 1009 10-1082 24-1040(1040)
6 PLN02195 cellulose synthase A 100.0 2E-284 5E-289 2509.4 78.2 971 17-1082 3-977 (977)
7 PLN02248 cellulose synthase-li 100.0 1E-244 3E-249 2176.7 74.1 924 16-1069 120-1125(1135)
8 PF03552 Cellulose_synt: Cellu 100.0 2E-218 5E-223 1904.2 50.0 719 354-1076 1-720 (720)
9 PLN02190 cellulose synthase-li 100.0 3E-199 6E-204 1745.5 63.0 726 256-1061 7-756 (756)
10 PLN02893 Cellulose synthase-li 100.0 8E-191 2E-195 1681.9 66.0 707 255-1059 9-728 (734)
11 TIGR03030 CelA cellulose synth 100.0 1.8E-67 3.9E-72 642.3 48.2 491 275-1035 57-561 (713)
12 PRK11498 bcsA cellulose syntha 100.0 2.8E-67 6.2E-72 641.8 45.3 473 276-1034 188-673 (852)
13 PF14569 zf-UDP: Zinc-binding 100.0 5.6E-45 1.2E-49 321.3 4.2 80 12-92 1-80 (80)
14 PRK05454 glucosyltransferase M 100.0 1.4E-35 3.1E-40 359.1 46.9 361 273-877 40-419 (691)
15 cd04191 Glucan_BSP_ModH Glucan 100.0 6.1E-34 1.3E-38 309.5 22.0 182 519-830 67-253 (254)
16 COG1215 Glycosyltransferases, 100.0 1.5E-30 3.2E-35 297.7 28.0 233 351-834 53-290 (439)
17 PRK14583 hmsR N-glycosyltransf 100.0 6.2E-28 1.3E-32 280.8 34.3 232 349-835 72-307 (444)
18 TIGR03111 glyc2_xrt_Gpos1 puta 100.0 1.9E-27 4.2E-32 276.5 29.1 288 348-886 45-341 (439)
19 PRK11204 N-glycosyltransferase 100.0 7.8E-27 1.7E-31 268.1 33.4 236 348-835 50-286 (420)
20 PRK14716 bacteriophage N4 adso 99.9 3.3E-25 7.1E-30 261.3 30.2 265 350-860 64-355 (504)
21 cd06421 CESA_CelA_like CESA_Ce 99.9 6.5E-25 1.4E-29 228.8 20.0 229 352-832 1-234 (234)
22 PRK11234 nfrB bacteriophage N4 99.9 3.2E-24 6.9E-29 262.0 28.0 199 535-865 132-365 (727)
23 cd06437 CESA_CaSu_A2 Cellulose 99.9 2.1E-24 4.5E-29 227.4 20.8 229 352-828 1-232 (232)
24 cd06435 CESA_NdvC_like NdvC_li 99.9 8.1E-23 1.8E-27 214.9 22.1 173 521-834 58-234 (236)
25 cd06427 CESA_like_2 CESA_like_ 99.9 5.9E-23 1.3E-27 218.5 20.7 233 352-834 1-236 (241)
26 PF13641 Glyco_tranf_2_3: Glyc 99.9 5E-23 1.1E-27 215.0 8.5 224 352-827 1-228 (228)
27 TIGR03472 HpnI hopanoid biosyn 99.8 1.1E-19 2.3E-24 207.5 23.9 235 349-828 38-272 (373)
28 PRK15489 nfrB bacteriophage N4 99.8 1E-18 2.2E-23 212.1 30.0 171 535-833 140-342 (703)
29 cd04190 Chitin_synth_C C-termi 99.8 1.5E-20 3.2E-25 201.9 11.6 52 777-830 190-243 (244)
30 cd04192 GT_2_like_e Subfamily 99.8 3.8E-19 8.3E-24 184.2 17.4 226 356-827 1-229 (229)
31 cd02520 Glucosylceramide_synth 99.8 1.3E-18 2.9E-23 179.7 17.3 195 352-827 1-195 (196)
32 cd06434 GT2_HAS Hyaluronan syn 99.8 1.2E-17 2.5E-22 175.1 18.2 58 535-601 63-120 (235)
33 cd06439 CESA_like_1 CESA_like_ 99.7 6.4E-17 1.4E-21 171.8 19.7 128 347-600 24-151 (251)
34 TIGR03469 HonB hopene-associat 99.7 2.2E-16 4.7E-21 181.3 24.7 134 348-595 36-170 (384)
35 COG2943 MdoH Membrane glycosyl 99.7 3.9E-14 8.4E-19 162.7 38.4 208 520-873 213-434 (736)
36 cd02525 Succinoglycan_BP_ExoA 99.7 5.1E-15 1.1E-19 155.4 20.2 75 726-834 159-233 (249)
37 PF13632 Glyco_trans_2_3: Glyc 99.6 2.2E-15 4.9E-20 154.6 13.5 138 556-828 1-143 (193)
38 cd06436 GlcNAc-1-P_transferase 99.5 9.3E-14 2E-18 143.7 13.5 115 520-641 51-175 (191)
39 cd06438 EpsO_like EpsO protein 99.4 9E-13 1.9E-17 134.7 11.9 61 535-601 62-123 (183)
40 cd04184 GT2_RfbC_Mx_like Myxoc 99.4 8E-12 1.7E-16 127.9 16.4 122 352-597 1-123 (202)
41 cd04195 GT2_AmsE_like GT2_AmsE 99.4 2.1E-11 4.6E-16 125.0 17.0 65 521-599 57-122 (201)
42 PF13506 Glyco_transf_21: Glyc 99.2 5.5E-11 1.2E-15 123.3 10.6 153 534-826 15-175 (175)
43 cd06433 GT_2_WfgS_like WfgS an 99.2 4.9E-10 1.1E-14 113.1 16.1 55 536-599 62-117 (202)
44 PF03142 Chitin_synth_2: Chiti 99.2 3.8E-09 8.2E-14 125.8 24.5 53 778-832 324-378 (527)
45 cd02510 pp-GalNAc-T pp-GalNAc- 99.1 2.4E-09 5.2E-14 118.4 19.4 110 356-582 2-112 (299)
46 cd04196 GT_2_like_d Subfamily 99.1 1.2E-09 2.5E-14 112.4 15.6 65 521-599 56-121 (214)
47 cd02522 GT_2_like_a GT_2_like_ 99.1 3.5E-09 7.6E-14 110.0 17.5 41 537-582 60-100 (221)
48 cd04186 GT_2_like_c Subfamily 99.1 4.2E-09 9.2E-14 103.2 15.4 50 536-594 61-111 (166)
49 cd06420 GT2_Chondriotin_Pol_N 99.0 6.7E-09 1.5E-13 104.7 16.8 41 536-582 66-106 (182)
50 PF14570 zf-RING_4: RING/Ubox 99.0 1.9E-10 4.1E-15 95.3 2.8 48 23-73 1-48 (48)
51 cd06423 CESA_like CESA_like is 99.0 6.2E-09 1.3E-13 100.9 13.2 64 521-598 55-119 (180)
52 PLN02726 dolichyl-phosphate be 99.0 1.9E-08 4.1E-13 107.9 17.7 60 521-594 70-129 (243)
53 cd02526 GT2_RfbF_like RfbF is 98.9 7.5E-09 1.6E-13 108.9 12.9 49 521-576 49-97 (237)
54 cd06913 beta3GnTL1_like Beta 1 98.9 1.9E-08 4.2E-13 105.5 15.8 41 356-401 1-41 (219)
55 PF00535 Glycos_transf_2: Glyc 98.9 2.3E-09 4.9E-14 104.2 6.9 110 520-641 54-165 (169)
56 cd06442 DPM1_like DPM1_like re 98.9 3.4E-08 7.3E-13 102.9 16.0 60 521-594 55-114 (224)
57 cd04185 GT_2_like_b Subfamily 98.9 2.4E-08 5.2E-13 102.9 14.7 65 521-597 53-117 (202)
58 cd04188 DPG_synthase DPG_synth 98.6 3.3E-07 7E-12 95.7 13.7 61 522-596 60-120 (211)
59 PRK10073 putative glycosyl tra 98.6 8.2E-07 1.8E-11 100.8 16.4 110 350-582 4-113 (328)
60 cd04179 DPM_DPG-synthase_like 98.6 3.3E-07 7.1E-12 92.5 11.1 65 521-599 56-120 (185)
61 TIGR01556 rhamnosyltran L-rham 98.5 1.8E-06 3.9E-11 94.7 16.7 68 520-597 46-113 (281)
62 PRK10018 putative glycosyl tra 98.5 2.9E-06 6.3E-11 94.6 18.0 52 520-581 61-112 (279)
63 PRK10063 putative glycosyl tra 98.4 6.8E-06 1.5E-10 89.8 17.4 47 352-402 1-48 (248)
64 cd00761 Glyco_tranf_GTA_type G 98.4 5.6E-06 1.2E-10 78.3 13.7 51 535-594 63-114 (156)
65 cd04187 DPM1_like_bac Bacteria 98.3 3.5E-06 7.6E-11 85.6 11.7 105 520-642 56-160 (181)
66 KOG2571 Chitin synthase/hyalur 98.3 5.6E-06 1.2E-10 102.7 15.5 50 778-829 549-598 (862)
67 COG1216 Predicted glycosyltran 98.3 2E-05 4.4E-10 88.2 17.1 69 519-599 56-126 (305)
68 PF10111 Glyco_tranf_2_2: Glyc 98.3 2.6E-05 5.6E-10 86.6 17.0 61 536-602 75-135 (281)
69 PTZ00260 dolichyl-phosphate be 98.2 3.6E-05 7.8E-10 87.9 16.3 41 536-581 149-189 (333)
70 PRK13915 putative glucosyl-3-p 98.0 2.7E-05 5.9E-10 88.0 11.7 50 536-593 102-152 (306)
71 PRK10714 undecaprenyl phosphat 97.3 0.0016 3.5E-08 74.2 12.5 40 536-580 77-116 (325)
72 KOG2547 Ceramide glucosyltrans 97.3 0.0049 1.1E-07 70.7 15.5 158 534-826 155-314 (431)
73 cd02511 Beta4Glucosyltransfera 97.0 0.006 1.3E-07 65.3 11.6 41 537-582 59-99 (229)
74 COG0463 WcaA Glycosyltransfera 96.9 0.0071 1.5E-07 58.0 10.6 44 351-400 2-45 (291)
75 COG5175 MOT2 Transcriptional r 96.7 0.00086 1.9E-08 75.2 2.1 49 21-72 15-63 (480)
76 TIGR00570 cdk7 CDK-activating 95.6 0.012 2.5E-07 66.8 4.6 62 19-82 2-63 (309)
77 PF14446 Prok-RING_1: Prokaryo 94.9 0.016 3.4E-07 49.9 2.1 46 19-72 4-51 (54)
78 cd02514 GT13_GLCNAC-TI GT13_GL 94.9 0.33 7.2E-06 56.2 13.4 41 355-399 3-43 (334)
79 PF02364 Glucan_synthase: 1,3- 91.1 2.1 4.6E-05 54.5 13.1 73 778-856 409-482 (817)
80 cd00162 RING RING-finger (Real 87.9 0.45 9.7E-06 37.1 2.6 44 22-71 1-44 (45)
81 KOG2978 Dolichol-phosphate man 87.8 3.1 6.6E-05 44.8 9.3 52 520-581 64-115 (238)
82 PF05290 Baculo_IE-1: Baculovi 86.8 0.4 8.8E-06 48.4 2.1 52 21-76 81-135 (140)
83 smart00504 Ubox Modified RING 82.9 1.2 2.6E-05 38.3 3.1 43 22-72 3-45 (63)
84 PRK14559 putative protein seri 77.8 1.1 2.4E-05 56.1 1.7 24 50-74 30-53 (645)
85 KOG2977 Glycosyltransferase [G 76.9 12 0.00026 42.8 9.0 51 353-404 68-121 (323)
86 PHA02862 5L protein; Provision 73.9 2 4.3E-05 44.2 1.9 49 20-74 2-54 (156)
87 PHA02929 N1R/p28-like protein; 72.8 3.8 8.2E-05 45.6 4.0 55 18-73 172-227 (238)
88 PF13639 zf-RING_2: Ring finge 70.8 2.3 5E-05 34.5 1.3 43 22-69 2-44 (44)
89 PF14447 Prok-RING_4: Prokaryo 69.1 2.1 4.6E-05 37.3 0.8 48 18-75 5-52 (55)
90 smart00659 RPOLCX RNA polymera 66.7 3.3 7.1E-05 34.5 1.4 27 21-49 3-29 (44)
91 PF03604 DNA_RNApol_7kD: DNA d 66.5 4.1 9E-05 31.8 1.8 26 22-49 2-27 (32)
92 KOG0823 Predicted E3 ubiquitin 65.5 3.6 7.9E-05 45.3 1.9 45 20-72 47-94 (230)
93 PF13712 Glyco_tranf_2_5: Glyc 65.2 22 0.00048 38.7 7.9 49 535-591 40-89 (217)
94 PHA02825 LAP/PHD finger-like p 63.8 5.5 0.00012 41.7 2.7 52 18-75 6-61 (162)
95 smart00184 RING Ring finger. E 63.7 6 0.00013 29.5 2.3 39 23-68 1-39 (39)
96 KOG3800 Predicted E3 ubiquitin 63.6 5 0.00011 45.5 2.6 53 21-75 1-53 (300)
97 KOG2932 E3 ubiquitin ligase in 60.9 5.2 0.00011 45.6 2.1 46 32-77 83-138 (389)
98 PF03966 Trm112p: Trm112p-like 60.7 1.8 4E-05 38.7 -1.2 25 51-75 42-66 (68)
99 KOG2068 MOT2 transcription fac 60.5 6.5 0.00014 45.4 2.8 52 20-75 249-300 (327)
100 PRK00420 hypothetical protein; 58.5 4.2 9.1E-05 40.4 0.8 29 40-74 24-52 (112)
101 PF02318 FYVE_2: FYVE-type zin 58.3 1.7 3.8E-05 42.9 -1.9 48 18-68 52-100 (118)
102 COG4858 Uncharacterized membra 57.4 55 0.0012 35.4 8.7 60 984-1043 99-161 (226)
103 PF13923 zf-C3HC4_2: Zinc fing 57.1 7.7 0.00017 30.8 1.9 39 23-68 1-39 (39)
104 PF00097 zf-C3HC4: Zinc finger 55.5 7.5 0.00016 30.8 1.7 40 23-68 1-41 (41)
105 KOG3737 Predicted polypeptide 55.3 41 0.00088 40.0 8.0 47 347-396 150-196 (603)
106 KOG0006 E3 ubiquitin-protein l 55.0 9.5 0.00021 43.7 2.9 64 15-79 310-414 (446)
107 PRK15103 paraquat-inducible me 54.6 9.7 0.00021 45.7 3.1 30 37-75 219-248 (419)
108 smart00249 PHD PHD zinc finger 53.6 7.4 0.00016 30.7 1.3 43 22-68 1-47 (47)
109 PF14471 DUF4428: Domain of un 51.6 8 0.00017 33.2 1.3 13 22-34 1-13 (51)
110 PF07282 OrfB_Zn_ribbon: Putat 49.2 11 0.00023 33.5 1.8 33 19-52 27-59 (69)
111 TIGR00155 pqiA_fam integral me 49.0 11 0.00024 45.0 2.3 30 38-75 214-243 (403)
112 smart00291 ZnF_ZZ Zinc-binding 48.9 14 0.0003 30.5 2.2 38 20-62 4-42 (44)
113 PF13920 zf-C3HC4_3: Zinc fing 47.6 12 0.00026 31.2 1.8 46 21-74 3-49 (50)
114 PHA02926 zinc finger-like prot 47.6 19 0.00042 39.8 3.7 63 16-78 166-235 (242)
115 PRK12495 hypothetical protein; 45.8 11 0.00024 41.4 1.6 30 38-74 41-70 (226)
116 COG5114 Histone acetyltransfer 45.6 6.6 0.00014 44.9 -0.2 36 22-61 7-43 (432)
117 KOG0916 1,3-beta-glucan syntha 45.1 2.4E+02 0.0052 38.9 13.2 69 778-855 1173-1245(1679)
118 PLN03208 E3 ubiquitin-protein 43.3 23 0.0005 38.4 3.4 51 16-73 14-79 (193)
119 PRK04023 DNA polymerase II lar 43.0 16 0.00035 47.7 2.6 45 18-73 624-674 (1121)
120 PRK00398 rpoP DNA-directed RNA 41.8 15 0.00033 30.4 1.4 27 22-49 5-31 (46)
121 KOG2068 MOT2 transcription fac 41.5 11 0.00023 43.8 0.6 31 46-76 1-33 (327)
122 cd00350 rubredoxin_like Rubred 40.5 10 0.00022 29.5 0.2 20 55-74 10-29 (33)
123 PRK07220 DNA topoisomerase I; 40.5 13 0.00029 47.6 1.4 48 21-70 590-643 (740)
124 PF11077 DUF2616: Protein of u 40.5 9.8 0.00021 40.5 0.2 35 23-62 55-104 (173)
125 COG4818 Predicted membrane pro 39.9 1.7E+02 0.0037 28.7 8.2 26 931-956 5-30 (105)
126 COG0551 TopA Zn-finger domain 38.2 18 0.00039 36.6 1.7 50 17-70 14-68 (140)
127 KOG3736 Polypeptide N-acetylga 37.8 43 0.00093 41.9 5.0 49 348-399 138-186 (578)
128 PRK12380 hydrogenase nickel in 37.4 10 0.00022 37.5 -0.3 26 39-71 70-95 (113)
129 KOG0457 Histone acetyltransfer 37.0 13 0.00028 44.4 0.4 51 20-77 14-65 (438)
130 PF06906 DUF1272: Protein of u 36.8 31 0.00067 30.5 2.5 47 22-74 7-53 (57)
131 cd02249 ZZ Zinc finger, ZZ typ 36.4 24 0.00053 29.2 1.9 31 22-57 2-33 (46)
132 COG4739 Uncharacterized protei 35.5 20 0.00044 37.2 1.5 46 29-74 77-122 (182)
133 TIGR00599 rad18 DNA repair pro 34.8 29 0.00062 41.5 2.8 51 15-73 20-71 (397)
134 cd00730 rubredoxin Rubredoxin; 34.0 13 0.00027 32.0 -0.2 8 64-71 36-43 (50)
135 PRK14503 mannosyl-3-phosphogly 33.9 91 0.002 37.0 6.5 40 534-576 142-181 (393)
136 cd02335 ZZ_ADA2 Zinc finger, Z 33.6 28 0.00061 29.4 1.8 30 22-55 2-32 (49)
137 PF11238 DUF3039: Protein of u 33.1 16 0.00034 32.4 0.3 14 62-75 44-57 (58)
138 TIGR02443 conserved hypothetic 32.9 23 0.00049 31.6 1.2 31 18-48 7-40 (59)
139 PRK11827 hypothetical protein; 32.8 26 0.00057 31.3 1.6 35 48-82 12-46 (60)
140 PF09484 Cas_TM1802: CRISPR-as 32.8 23 0.00049 44.3 1.6 41 17-57 195-251 (593)
141 COG1996 RPC10 DNA-directed RNA 32.7 21 0.00045 30.7 0.9 29 20-49 6-34 (49)
142 PF07649 C1_3: C1-like domain; 32.6 21 0.00046 27.0 0.9 28 22-53 2-29 (30)
143 KOG1941 Acetylcholine receptor 32.2 16 0.00035 43.1 0.2 63 19-84 364-432 (518)
144 PF00628 PHD: PHD-finger; Int 31.5 29 0.00063 28.7 1.6 45 22-70 1-50 (51)
145 PF14634 zf-RING_5: zinc-RING 31.4 41 0.00088 27.5 2.4 43 23-70 2-44 (44)
146 PRK07219 DNA topoisomerase I; 30.6 30 0.00066 45.0 2.3 53 20-75 688-746 (822)
147 PF03452 Anp1: Anp1; InterPro 30.1 4.4E+02 0.0095 30.3 10.9 56 348-407 21-78 (269)
148 PRK14973 DNA topoisomerase I; 30.1 31 0.00066 45.6 2.2 48 21-71 589-644 (936)
149 PF13248 zf-ribbon_3: zinc-rib 29.9 15 0.00033 27.1 -0.3 15 57-71 11-25 (26)
150 PF14319 Zn_Tnp_IS91: Transpos 29.6 33 0.00072 33.9 1.9 38 26-74 33-72 (111)
151 PRK11595 DNA utilization prote 29.5 33 0.00072 37.6 2.1 39 20-71 5-43 (227)
152 cd02336 ZZ_RSC8 Zinc finger, Z 28.7 36 0.00079 28.6 1.7 36 22-62 2-38 (45)
153 PF15050 SCIMP: SCIMP protein 28.6 51 0.0011 33.3 2.9 40 921-961 2-46 (133)
154 PRK12438 hypothetical protein; 28.6 1.1E+03 0.024 31.9 15.4 46 1015-1060 259-304 (991)
155 PF03884 DUF329: Domain of unk 27.8 35 0.00077 30.2 1.5 28 58-85 14-47 (57)
156 PF13240 zinc_ribbon_2: zinc-r 27.7 17 0.00036 26.4 -0.4 15 57-71 8-22 (23)
157 TIGR02460 osmo_MPGsynth mannos 27.6 1.3E+02 0.0029 35.5 6.4 40 534-576 141-180 (381)
158 TIGR00595 priA primosomal prot 27.0 30 0.00066 42.5 1.4 51 33-83 206-261 (505)
159 TIGR01562 FdhE formate dehydro 26.7 48 0.001 38.4 2.7 44 19-71 183-233 (305)
160 PRK00564 hypA hydrogenase nick 26.5 22 0.00048 35.4 0.1 28 40-74 72-100 (117)
161 KOG0311 Predicted E3 ubiquitin 26.4 18 0.00038 42.3 -0.7 45 22-72 45-89 (381)
162 PRK06319 DNA topoisomerase I/S 26.0 37 0.0008 44.5 1.9 57 18-77 590-660 (860)
163 PRK03681 hypA hydrogenase nick 25.7 21 0.00045 35.4 -0.3 26 40-72 71-97 (114)
164 PRK14873 primosome assembly pr 25.7 42 0.0009 42.8 2.2 11 62-72 422-432 (665)
165 COG4391 Uncharacterized protei 25.6 25 0.00054 31.5 0.2 17 58-74 44-60 (62)
166 PF08274 PhnA_Zn_Ribbon: PhnA 24.9 24 0.00053 27.3 0.0 24 22-47 4-27 (30)
167 PF12773 DZR: Double zinc ribb 24.6 53 0.0011 27.3 2.0 12 20-31 12-23 (50)
168 TIGR02556 cas_TM1802 CRISPR-as 24.2 50 0.0011 41.2 2.5 41 20-61 170-222 (555)
169 PF13896 Glyco_transf_49: Glyc 24.2 82 0.0018 36.5 4.1 59 329-398 10-70 (317)
170 PRK15103 paraquat-inducible me 24.1 34 0.00073 41.2 1.0 33 40-75 11-43 (419)
171 KOG2857 Predicted MYND Zn-fing 24.1 40 0.00087 34.9 1.4 45 20-76 5-50 (157)
172 PTZ00293 thymidine kinase; Pro 23.7 33 0.00071 37.7 0.7 35 21-55 138-177 (211)
173 TIGR00100 hypA hydrogenase nic 23.7 28 0.00061 34.5 0.2 28 40-74 71-98 (115)
174 KOG2177 Predicted E3 ubiquitin 23.4 41 0.00089 36.0 1.4 43 19-69 12-54 (386)
175 cd00899 b4GalT Beta-4-Galactos 23.2 64 0.0014 35.7 2.8 80 723-832 111-200 (219)
176 TIGR01206 lysW lysine biosynth 23.2 48 0.001 29.0 1.5 12 22-33 4-15 (54)
177 KOG1609 Protein involved in mR 23.1 58 0.0013 36.6 2.6 58 20-78 78-139 (323)
178 KOG3507 DNA-directed RNA polym 22.9 33 0.00071 30.6 0.4 28 20-49 20-47 (62)
179 PF01155 HypA: Hydrogenase exp 22.8 18 0.00038 35.7 -1.4 30 39-75 70-99 (113)
180 KOG2824 Glutaredoxin-related p 22.8 47 0.001 37.8 1.7 44 17-69 226-269 (281)
181 PRK14714 DNA polymerase II lar 22.6 45 0.00097 44.9 1.7 48 21-75 668-722 (1337)
182 cd03031 GRX_GRX_like Glutaredo 22.5 37 0.00079 35.2 0.8 43 19-70 98-141 (147)
183 PRK14890 putative Zn-ribbon RN 22.4 94 0.002 27.8 3.1 50 19-70 6-56 (59)
184 COG4707 Uncharacterized protei 22.3 29 0.00063 33.6 -0.0 44 456-510 20-70 (107)
185 COG0068 HypF Hydrogenase matur 22.3 57 0.0012 41.5 2.4 61 18-78 99-191 (750)
186 TIGR00155 pqiA_fam integral me 22.2 49 0.0011 39.6 1.9 35 37-75 11-46 (403)
187 PF09623 Cas_NE0113: CRISPR-as 22.1 4.7E+02 0.01 29.2 9.2 60 356-424 4-63 (224)
188 PF13719 zinc_ribbon_5: zinc-r 21.7 35 0.00076 27.3 0.3 11 64-74 4-14 (37)
189 PF06570 DUF1129: Protein of u 21.4 5.3E+02 0.011 27.9 9.3 25 981-1005 81-105 (206)
190 PRK06393 rpoE DNA-directed RNA 21.2 45 0.00097 30.3 0.9 23 38-71 4-26 (64)
191 smart00744 RINGv The RING-vari 20.9 1.1E+02 0.0023 26.1 3.0 45 22-69 1-49 (49)
192 PF14446 Prok-RING_1: Prokaryo 20.8 29 0.00062 30.4 -0.3 17 59-75 18-34 (54)
193 PF11781 RRN7: RNA polymerase 20.8 45 0.00097 26.8 0.8 27 19-47 5-33 (36)
194 KOG2041 WD40 repeat protein [G 20.7 42 0.00092 42.5 0.9 47 20-75 1117-1169(1189)
195 COG3357 Predicted transcriptio 20.7 36 0.00078 32.8 0.2 10 63-72 77-86 (97)
196 KOG4217 Nuclear receptors of t 20.6 51 0.0011 40.0 1.5 33 18-75 267-299 (605)
197 PRK03824 hypA hydrogenase nick 20.6 38 0.00083 34.5 0.4 12 60-71 105-116 (135)
198 PF13717 zinc_ribbon_4: zinc-r 20.6 38 0.00082 27.0 0.3 11 64-74 4-14 (36)
199 cd02340 ZZ_NBR1_like Zinc fing 20.6 70 0.0015 26.5 1.9 29 22-55 2-31 (43)
200 KOG3103 Rab GTPase interacting 20.4 3.8E+02 0.0082 30.3 7.9 78 943-1045 156-233 (249)
201 PF03107 C1_2: C1 domain; Int 20.4 57 0.0012 24.8 1.2 28 22-53 2-29 (30)
202 PF09526 DUF2387: Probable met 20.3 52 0.0011 30.3 1.2 31 18-48 6-39 (71)
No 1
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=100.00 E-value=4.6e-318 Score=2818.82 Aligned_cols=1071 Identities=92% Similarity=1.492 Sum_probs=993.1
Q ss_pred cccccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCC
Q 001413 10 AQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~ 89 (1082)
+++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|||||||
T Consensus 7 ~~~k~~~~~~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYkr~kgsprv~gDeeed~ 86 (1079)
T PLN02638 7 TGAKPMKHGGGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYKRHKGSPAILGDEEEDG 86 (1079)
T ss_pred CCCCCccccCCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCcCccccccC
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999955554
Q ss_pred CCCCCcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCC
Q 001413 90 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPG 169 (1082)
Q Consensus 90 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (1082)
|+||+||||++..+++.+.++++|+|+||+|+||++.|.++..++++.+.+++|+||+||.+++|+++++++|+.+++|.
T Consensus 87 ~~dDle~ef~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 166 (1079)
T PLN02638 87 DADDGASDFNYPSSNQDQKQKIAERMLSWRMNSGRGEDVGAPNYDKEVSHNHIPLLTNGQSVSGELSAASPERLSMASPG 166 (1079)
T ss_pred cchhhhhhhccccccccchhHHHHHHhhhhcccCcCcccccccccccCCCCCCcccccCccccCccCCCCCccccccCcc
Confidence 58999999998654555667889999999999999988887788877555688999999988999997776666666665
Q ss_pred CCCCccccccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCC-CCCCCCCCccC
Q 001413 170 VGPGKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGG-DIDASTDVLVD 248 (1082)
Q Consensus 170 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 248 (1082)
+ .||||||+|+.+.+.++|.|||+||+++||||||+||||||+||+||+||+.++.+....++++|+ +.++.++.+++
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~wk~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1079)
T PLN02638 167 A-GGKRIPYASDVNQSPNIRVVDPVREFGSPGLGNVAWKERVDGWKMKQDKNTIPMSTGTAPSEGRGGGDIDASTDVLMD 245 (1079)
T ss_pred c-cCCcccccccccccCCcccCCccccccccccccHHHHHHHHHHHhcccccccccccccccccccCcCCCCCccccccc
Confidence 4 689999999877778999999999999999999999999999999999887766665444565544 33221222467
Q ss_pred ccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccc
Q 001413 249 DSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLP 328 (1082)
Q Consensus 249 ~~~~~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~P 328 (1082)
|+++|+++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+|
T Consensus 246 ~~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~WFaf~Wll~q~~Kw~P 325 (1079)
T PLN02638 246 DALLNDEARQPLSRKVSIPSSRINPYRMVIVLRLVILCIFLHYRITNPVRNAYALWLISVICEIWFALSWILDQFPKWLP 325 (1079)
T ss_pred cccccccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhh
Q 001413 329 VNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 408 (1082)
Q Consensus 329 v~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Ea 408 (1082)
|+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.||
T Consensus 326 v~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EA 405 (1079)
T PLN02638 326 VNRETYLDRLALRYDREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSET 405 (1079)
T ss_pred cccccCHHHHHHHhccCCCcccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHHHHHHHHH
Confidence 99999999999999999889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCC
Q 001413 409 SEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTP 488 (1082)
Q Consensus 409 a~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~ 488 (1082)
|+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+||++
T Consensus 406 a~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~~~~p~~~~~m~dgt~ 485 (1079)
T PLN02638 406 SEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKAQKVPEEGWIMQDGTP 485 (1079)
T ss_pred HHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCc
Q 001413 489 WPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINN 568 (1082)
Q Consensus 489 w~~~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~ 568 (1082)
|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+||
T Consensus 486 W~g~~~~dHp~IiqVll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNn 565 (1079)
T PLN02638 486 WPGNNTRDHPGMIQVFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINN 565 (1079)
T ss_pred CCCCCCCCCHHHHHHHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCC
Q 001413 569 SKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPL 648 (1082)
Q Consensus 569 ~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~ 648 (1082)
|++||+||||||||+.|+++|||||||+|||+|++|||+|+++||||++|+|+||+|||+||||||+|||+||||++||.
T Consensus 566 s~alr~AMCf~lDp~~g~~vafVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALYG~~p~~ 645 (1079)
T PLN02638 566 SKALREAMCFLMDPNLGKSVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPI 645 (1079)
T ss_pred hHHHHHhhhhhcCcccCCeeEEecCCcccCCCCCCCcccccceeeeccccccccccCCccccccCcceeehhhcCcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCCCCCCCcccccCCC-ccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccch
Q 001413 649 KPKHRKPGLLSSLFGGS-RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 727 (1082)
Q Consensus 649 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 727 (1082)
..+..... +++|||++ |++.++.+.+...+++..++.+.+.+.+++++++++.++...+++++.++++..++++||+|
T Consensus 646 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~S 724 (1079)
T PLN02638 646 KPKHKKPG-FLSSLCGGSRKKSSKSSKKGSDKKKSGKHVDPTVPVFNLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 724 (1079)
T ss_pred cccccccc-cccccccccccccccccchhhccccccccccccccccccccccccccccccchhhhhhhhhhhhhhhcccc
Confidence 54322222 22245555 43322221111111222233445567788888888888777778888899999999999999
Q ss_pred HHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCccc
Q 001413 728 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 807 (1082)
Q Consensus 728 ~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~ 807 (1082)
.+|++|++++.+|.+...+++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|++++|.
T Consensus 725 ~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rLH~rGWrSvY~~P~r~AF~ 804 (1079)
T PLN02638 725 AVFVASTLMENGGVPQSATPESLLKEAIHVISCGYEDKTDWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 804 (1079)
T ss_pred HHHHHHHHHhhcCCCCCCCcHHHHHHHHhhccCCCccCCchhhhcCeeecceecHHHHHHHHHcCCCcEEecCCCchHhc
Confidence 99999999999999988899999999999999999999999999999999999999999999999999999998888899
Q ss_pred ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 001413 808 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMP 887 (1082)
Q Consensus 808 G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip 887 (1082)
|+||+|+.++++||+|||+|++||++++++|++++++++|+++|||+|+++++||++++++++|+++|++||++|++++|
T Consensus 805 GlAP~~l~d~L~Qr~RWA~G~lqI~fsr~nPl~~G~~~rL~l~QRL~Yl~~~~yp~~sip~liY~llP~l~Ll~G~~i~P 884 (1079)
T PLN02638 805 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKWLERFAYVNTTIYPITSIPLLLYCTLPAVCLLTGKFIIP 884 (1079)
T ss_pred CcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCC
Confidence 99999999999999999999999999999999987778999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCC
Q 001413 888 QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 967 (1082)
Q Consensus 888 ~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~ 967 (1082)
.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|+++||++++++|+|+++++.|.||+|..+.++
T Consensus 885 ~vs~~~~~~f~~lfl~~~~~~llE~~wsG~si~~WWrnQr~w~I~~tSa~lfavl~~iLK~Lggs~~~F~VTsK~~d~~~ 964 (1079)
T PLN02638 885 QISNIASIWFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSAHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 964 (1079)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHhccccHHHHhhhhhheehhhhHHHHHHHHHHHHHHHccCcccceeccccccccc
Confidence 99999889999999999999999999999999999999999999999999999999999999999999999999987666
Q ss_pred CccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHH
Q 001413 968 DFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVV 1047 (1082)
Q Consensus 968 ~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~ 1047 (1082)
.++++|+|+||++++|++||+++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++
T Consensus 965 ~~~ely~f~wS~l~iP~ttl~iiNlvaiv~g~~~~~~~g~~~~~~~~~~~~~~~wvv~~l~Pf~kgl~gR~~r~P~~v~v 1044 (1079)
T PLN02638 965 DFAELYMFKWTTLLIPPTTLLIINLVGVVAGISYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVV 1044 (1079)
T ss_pred cccceeEecceehhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehH
Confidence 78999999999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001413 1048 WSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082 (1082)
Q Consensus 1048 ~s~lla~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1082 (1082)
||++|+++||||||+|+||+++++||++++||++|
T Consensus 1045 ~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1079 (1079)
T PLN02638 1045 WSILLASIFSLLWVRIDPFTTRVTGPDVEQCGINC 1079 (1079)
T ss_pred HHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999
No 2
>PLN02400 cellulose synthase
Probab=100.00 E-value=2.2e-317 Score=2813.86 Aligned_cols=1052 Identities=74% Similarity=1.289 Sum_probs=975.2
Q ss_pred cccccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCC
Q 001413 10 AQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~ 89 (1082)
+++||++++++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||||
T Consensus 26 ~g~kp~~~~~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR~KgsprV~GD-eeed 104 (1085)
T PLN02400 26 SGPKPLKNLNGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRRHKGSPRVEGD-EDED 104 (1085)
T ss_pred ccCCCccccCCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccccccCCCCCCcc-cccc
Confidence 456999999999999999999999999999999999999999999999999999999999999999999999999 7889
Q ss_pred CCCCCcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCC-CCCCCccccCCCCCcccCCccccCCCCCCCccccccCCC
Q 001413 90 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDAS-APKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASP 168 (1082)
Q Consensus 90 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (1082)
|+||+||||+|..+++.+.+++ . |++.|.+ +++|+. +++|+||+||.++||+++++++|+.++||
T Consensus 105 d~DDlenEf~~~~~~~~~~~~~---------~-~~~~~~~~~~~~~~----~~~p~lt~g~~~s~ei~~~~~~~~~~~~~ 170 (1085)
T PLN02400 105 DVDDLENEFNYAQGNGKARHQW---------Q-GEDIELSSSSRHES----QPIPLLTHGQPVSGEIPCATPDNQSVRTT 170 (1085)
T ss_pred cchhhhhhhccccccccccccc---------c-ccCccccCcccccC----CCCccccCCcccCCCCCCCCCccccccCC
Confidence 9999999999964333332222 1 5665554 456663 47899999999999999888887777766
Q ss_pred CC---CCCccc---cccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCC
Q 001413 169 GV---GPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAS 242 (1082)
Q Consensus 169 ~~---~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1082)
.. +.|||| ||+|+. .+.++|.+||+||+++||||||+||||||+||+||+||+.++.+.. ++++|++.+|
T Consensus 171 ~~~~~~~~~~vh~~p~~d~~-~~~~~~~~d~~~~~~~~g~g~~~wkerv~~wk~~~~k~~~~~~~~~--~~~~~g~~~~- 246 (1085)
T PLN02400 171 SGPLGPAERNANSSPYIDPR-QPVPVRIVDPSKDLNSYGLGNVDWKERVEGWKLKQDKNMMQMTNKY--HEGKGGDMEG- 246 (1085)
T ss_pred cccccccCCcccccCccCcc-cCCCccccCccccccccccCcHHHHHHHHHHHhhhhhhcccccccc--ccccccCCCC-
Confidence 43 356898 599963 3367789999999999999999999999999999998877666543 4555555443
Q ss_pred CCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001413 243 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 322 (1082)
Q Consensus 243 ~~~~~~~~~~~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 322 (1082)
++++++|+++||+.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 247 ~~~~~~d~~~~~~~~~pL~~~~~i~~~~~~~yR~~~~~~lv~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q 326 (1085)
T PLN02400 247 TGSNGDELQMADDARLPMSRVVPIPSSRLTPYRIVIILRLIILGFFLQYRVTHPVKDAYGLWLTSVICEIWFALSWLLDQ 326 (1085)
T ss_pred CCCCcccccccccccCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 23346789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001413 323 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 402 (1082)
Q Consensus 323 ~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 402 (1082)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 327 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 406 (1085)
T PLN02400 327 FPKWYPINRETYLDRLALRYDRDGEPSQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLTF 406 (1085)
T ss_pred CcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001413 403 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 482 (1082)
Q Consensus 403 ~al~Eaa~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~ 482 (1082)
|||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.
T Consensus 407 ~Al~Eaa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~~~~~~~~~~~ 486 (1085)
T PLN02400 407 EALSETAEFARKWVPFCKKHNIEPRAPEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAKAQKIPEEGWT 486 (1085)
T ss_pred HHHHHHHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecC
Q 001413 483 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 562 (1082)
Q Consensus 483 m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDc 562 (1082)
|+|||+|||+++||||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||||||
T Consensus 487 m~dgt~W~g~~~~dHp~iIqVll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDC 566 (1085)
T PLN02400 487 MQDGTPWPGNNPRDHPGMIQVFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDC 566 (1085)
T ss_pred cccCccCCCCCCCCCchhhhhhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhcc
Q 001413 563 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 642 (1082)
Q Consensus 563 Dh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 642 (1082)
|||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+|+||||+|||+|||
T Consensus 567 DmY~Nns~a~r~AMCf~lD~~~g~~~afVQFPQrF~gi~~~D~Y~n~~~vffdi~~~GldGlqGP~YvGTGC~frR~aLY 646 (1085)
T PLN02400 567 DHYFNNSKALKEAMCFMMDPAIGKKTCYVQFPQRFDGIDLHDRYANRNIVFFDINLKGLDGIQGPVYVGTGCCFNRQALY 646 (1085)
T ss_pred ccccCCchhHHhhhhheeccCCCceeEEEeCCcccCCCCCCCCcccceeEEeeccccccccCCCccccccCcceeeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHH
Q 001413 643 GYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEK 722 (1082)
Q Consensus 643 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1082)
|++||..++.....+.|+|||+.|++.+..+....++++..+..+++.++++++++++++++ +++|++.+++++++++
T Consensus 647 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~ 724 (1085)
T PLN02400 647 GYDPVLTEEDLEPNIIVKSCCGSRKKGKGSKKYNIDKKRAMKRTESNVPIFNMEDIEEGVEG--YDDERSLLMSQKSLEK 724 (1085)
T ss_pred cCCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccchhhhhhhhhhhhh
Confidence 99998765432222222345577766543332222333334455667789999999999988 7778888999999999
Q ss_pred hccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCC
Q 001413 723 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPK 802 (1082)
Q Consensus 723 ~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~ 802 (1082)
+||+|.+|++|++++.||.+..++++++++||+||+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|+
T Consensus 725 ~fG~S~~fi~S~~~~~~~~~~~~~~~~ll~eA~~V~sC~YE~~T~WG~evGwiYGSvTED~~TG~~LH~rGWrSvY~~p~ 804 (1085)
T PLN02400 725 RFGQSPVFIAATFMEQGGIPPSTNPATLLKEAIHVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHARGWISIYCMPP 804 (1085)
T ss_pred hccccHHHHHHHHHHhcCCCCCCCcHHHHHHHHHhhccCCccCCchhhhhCeeccceechHHHHHHHHccCCceEecCCC
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhC
Q 001413 803 RPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTN 882 (1082)
Q Consensus 803 ~aaf~G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG 882 (1082)
+++|.|+||+|+.++++||+|||+|++||+++++||+++++.++|+++|||+|+++++||++++++++|+++|++||++|
T Consensus 805 r~af~GlAP~~l~d~L~Qr~RWA~G~lqI~~sr~nPl~~G~~~~L~l~QRL~Yl~~~~y~~~slp~liY~llP~l~LltG 884 (1085)
T PLN02400 805 RPAFKGSAPINLSDRLNQVLRWALGSIEILLSRHCPIWYGYNGRLKLLERLAYINTIVYPITSIPLLAYCVLPAFCLITN 884 (1085)
T ss_pred cHhhcCcCCCCHHHHHHHHHHHhhcchheeeccCCccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88999999999999999999999999999999999999877789999999999999999999999999999999999999
Q ss_pred CccccccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCC
Q 001413 883 KFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKA 962 (1082)
Q Consensus 883 ~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg 962 (1082)
+++||.++++++++|+++|+++++++++|++|+|+++++||||||||+|+++|++|||++++++|+|++++++|.||+|.
T Consensus 885 ~~i~P~vs~~~~~~fi~lf~~~~~~~lLE~~~sG~si~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvLgg~~~~F~VTsK~ 964 (1085)
T PLN02400 885 KFIIPEISNYASMWFILLFISIFATGILELRWSGVGIEDWWRNEQFWVIGGTSAHLFAVFQGLLKVLAGIDTNFTVTSKA 964 (1085)
T ss_pred CccCCccchHHHHHHHHHHHHHHHHHHHHHhhcCccHHHhhhccceeeehhhHHHHHHHHHHHHHHhcCCcccceecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Q 001413 963 SDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTP 1042 (1082)
Q Consensus 963 ~~~d~~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P 1042 (1082)
.+.++.++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+|
T Consensus 965 ~d~~~~~~ely~f~~s~L~iP~ttl~llNlvaiv~Gv~~~i~~g~~~~g~l~~~~~~~~wvvv~l~Pf~kgL~gR~~r~P 1044 (1085)
T PLN02400 965 SDEDGDFAELYVFKWTSLLIPPTTVLLVNLVGIVAGVSYAINSGYQSWGPLFGKLFFAIWVIAHLYPFLKGLLGRQNRTP 1044 (1085)
T ss_pred ccccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCc
Confidence 87555678999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhhheEecCCCCCCCCC-CccccCCCC
Q 001413 1043 TIVVVWSILLASIFSLLWVRVDPFTTRVTGP-DVEQCGINC 1082 (1082)
Q Consensus 1043 ~~v~~~s~lla~~f~~lwv~i~~~~~~~~~~-~~~~~~~~~ 1082 (1082)
+||++||++||++||||||+||||+++++|| ++++|||+|
T Consensus 1045 ~~v~~~s~lla~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~ 1085 (1085)
T PLN02400 1045 TIVIVWSILLASIFSLLWVRIDPFVSDTTKAAANGQCGVNC 1085 (1085)
T ss_pred eeHHHHHHHHHHHHHHHheeccccccCCCCchhHhhcCcCC
Confidence 9999999999999999999999999999999 899999999
No 3
>PLN02436 cellulose synthase A
Probab=100.00 E-value=9e-314 Score=2771.54 Aligned_cols=1056 Identities=69% Similarity=1.240 Sum_probs=976.9
Q ss_pred cccccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCC
Q 001413 10 AQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~ 89 (1082)
+++||+++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||||
T Consensus 26 ~~~k~~~~~~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~r~kgs~~~~~d-~ee~ 104 (1094)
T PLN02436 26 ARIRSVQELSGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGD-EEED 104 (1094)
T ss_pred cCCCCccccCCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-cccc
Confidence 356999999999999999999999999999999999999999999999999999999999999999999999999 7788
Q ss_pred CCCCCcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCc--cc--cCCCCCcccCCccccCCCCCCCcccccc
Q 001413 90 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDN--EV--SHNHIPRLTGGQEVSGELSAASPEHLSM 165 (1082)
Q Consensus 90 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (1082)
++||+||||++.. ++.+.++++|+|+||+|++|++.+.+...++. +. ..+++|++++|| +++|++ +++|+.+
T Consensus 105 ~~dd~e~ef~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~ 180 (1094)
T PLN02436 105 DIDDLENEFDYGN-NGLDPEQVAEAMLSSRLNTGRHSNVSGIATPSELDSAPPGSQIPLLTYGE-EDVEIS--SDRHALI 180 (1094)
T ss_pred cchhhhhhhcCcc-cccchHHHHHHHhhhhcccCccccccccccccccccCCCcCCCcccccCc-ccCccC--Ccccccc
Confidence 8999999999873 55556888999999999999998876443322 12 134789999998 578887 3567766
Q ss_pred CCCCCCCCccc-c--ccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCC
Q 001413 166 ASPGVGPGKRI-H--YSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAS 242 (1082)
Q Consensus 166 ~~~~~~~g~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1082)
+|+.++.|||| | |+|+ ..+.++|.+||+||+++||||||+||||||+||+||++|++++.+ . +++++++++|
T Consensus 181 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~wkerv~~wk~kq~~~~~~~~~-~--~~~~~~~~~~- 255 (1094)
T PLN02436 181 VPPSTGHGNRVHPMPFPDS-SASLQPRPMVPQKDLAVYGYGSVAWKDRMEEWKKKQNEKLQVVKH-E--GGNDGGNNDG- 255 (1094)
T ss_pred cCCcccccccccccccccc-cccCCCccCCccccccccccCcHHHHHHHHHHHhhhhhccccccc-c--cccccCCCCC-
Confidence 77776678999 4 8874 234778999999999999999999999999999999855444443 2 4555555543
Q ss_pred CCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001413 243 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 322 (1082)
Q Consensus 243 ~~~~~~~~~~~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 322 (1082)
++.+++|++++|++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 256 ~~~~~~~~~~~~~~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~WFaf~Wll~Q 335 (1094)
T PLN02436 256 DELDDPDLPMMDEGRQPLSRKLPIPSSKINPYRMIIILRLVILGLFFHYRILHPVNDAYGLWLTSVICEIWFAVSWILDQ 335 (1094)
T ss_pred CCCCCcccccccccCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHHcc
Confidence 23346788889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001413 323 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 402 (1082)
Q Consensus 323 ~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 402 (1082)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 336 ~~Kw~Pv~R~t~~drL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 415 (1094)
T PLN02436 336 FPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTF 415 (1094)
T ss_pred CcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001413 403 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 482 (1082)
Q Consensus 403 ~al~Eaa~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~ 482 (1082)
|||.|||+|||+||||||||+|||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.
T Consensus 416 ~AL~EAa~FAk~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~ 495 (1094)
T PLN02436 416 EALSETSEFARKWVPFCKKFSIEPRAPEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWT 495 (1094)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecC
Q 001413 483 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 562 (1082)
Q Consensus 483 m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDc 562 (1082)
|+|||+|||++++|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+||||||||||||
T Consensus 496 m~dgt~W~g~~~~dHp~IIqVll~~~~~~d~~g~~LP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDC 575 (1094)
T PLN02436 496 MQDGTPWPGNNVRDHPGMIQVFLGHSGVRDVEGNELPRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDC 575 (1094)
T ss_pred hccCccCCCCCCCCCccceEEEecCCCCcccccccCceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEeccc
Confidence 99999999999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhcc
Q 001413 563 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 642 (1082)
Q Consensus 563 Dh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 642 (1082)
|||+|||+++|+||||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+|+||||+|||+|||
T Consensus 576 DmYiNns~a~r~AMCfllD~~~g~~~afVQFPQrF~gi~k~D~Y~n~~~vffdi~~~GlDGlqGP~YvGTGC~frR~aLY 655 (1094)
T PLN02436 576 DHYINNSKALREAMCFMMDPQSGKKICYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGIQGPIYVGTGCVFRRQALY 655 (1094)
T ss_pred ccccCchHHHHHhhhhhcCCccCCeeEEEcCCcccCCCCCCCcccccceEeeeccccccccCCCccccccCceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCC-c----ccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhH
Q 001413 643 GYEPPLKPKHRKPGL-L----SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQ 717 (1082)
Q Consensus 643 G~~p~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 717 (1082)
|++||...+.+...+ | |+||||.|+++++.+++..+ +.++.+...++++++++++++++ +++|++..+++
T Consensus 656 G~~pp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 730 (1094)
T PLN02436 656 GYDAPKKKKPPGKTCNCWPKWCCLCCGSRKKKKKKKSKEKK---KKKNREASKQIHALENIEEGIEG--SNNEKSSETPQ 730 (1094)
T ss_pred ccCCccccccccccccccccccccccccccccccccccccc---ccccccccccccccccccccccc--ccchhhhhhhh
Confidence 999987655332222 1 24566777664332222111 12333455678889999998888 77788889999
Q ss_pred HHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEE
Q 001413 718 MSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSI 797 (1082)
Q Consensus 718 ~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsv 797 (1082)
+.++++||+|++|++|+++++||.+...+++++++||+||+||+||++|+||+||||.|+|+|||+.||++||++||||+
T Consensus 731 ~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGwiYGSvTEDv~TG~rLH~rGWrSv 810 (1094)
T PLN02436 731 LKLEKKFGQSPVFVASTLLENGGVPRNASPASLLREAIQVISCGYEDKTEWGKEIGWIYGSVTEDILTGFKMHCHGWRSV 810 (1094)
T ss_pred hhHHhhhcccHHHHHHHHHhhcCCCCCCCcHHHHHHHHHhhcCCCcccChhhHhhCeeccceecHHHHHHHHHcCCCceE
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHH
Q 001413 798 YCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAV 877 (1082)
Q Consensus 798 Y~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l 877 (1082)
|++|++++|.|+||+|+.+++.||+|||+|++||++++++|+|+|+.++|+|+|||+|+++++||++++++++|+++|++
T Consensus 811 Y~~P~r~AF~GlAP~~L~d~L~Qr~RWA~G~lQIffsr~nPl~~g~~~~L~l~QRL~Yl~~~ly~l~Slp~liY~~lP~l 890 (1094)
T PLN02436 811 YCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLIVYCTLPAI 890 (1094)
T ss_pred eCCCCchhhcCcCCCCHHHHHHHHHHHhhcceeeeeccCCcchhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888999999999999999999999999999999999998877899999999999999999999999999999999
Q ss_pred HHHhCCccccccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCee
Q 001413 878 CLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFT 957 (1082)
Q Consensus 878 ~LltG~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~ 957 (1082)
||++|++++|.++.+++++|+++|++++++.++|++|+|+++++||||||||+|+++|++|||++++++|+|++++++|.
T Consensus 891 ~LL~G~~i~P~vs~~~~~~fi~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLKvLggs~~~F~ 970 (1094)
T PLN02436 891 CLLTGKFIVPEISNYASILFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVNTNFT 970 (1094)
T ss_pred HHHcCCeecCccchHHHHHHHHHHHHHHHHHHHHHHhccccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHhccCcccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Q 001413 958 VTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGR 1037 (1082)
Q Consensus 958 VTpKg~~~d~~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR 1037 (1082)
||+|..+ ++.++++|+|+||++++|+++++++|++|+++|+++++++++++|+++++++|+++|+++|+|||+||||||
T Consensus 971 VTsK~~d-~~~~a~ly~f~~S~L~iP~tti~ilNlvaiv~Gi~~~i~~g~~~~g~l~~~l~~~~wvvv~lyPf~kgL~gr 1049 (1094)
T PLN02436 971 VTSKAAD-DGEFSELYLFKWTSLLIPPTTLLIINIIGVIVGVSDAINNGYDSWGPLFGRLFFALWVIVHLYPFLKGLLGK 1049 (1094)
T ss_pred ecccccc-cccccceeeecceeHhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999887 346789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001413 1038 QNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082 (1082)
Q Consensus 1038 ~~~~P~~v~~~s~lla~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1082 (1082)
++|+||||++||++||++||||||+||||+++ +||++++|||||
T Consensus 1050 ~~r~P~~v~v~s~lla~~~~l~~v~~~~~~~~-~~~~~~~~~~~~ 1093 (1094)
T PLN02436 1050 QDRMPTIILVWSILLASILTLLWVRVNPFVSK-GGPVLEICGLDC 1093 (1094)
T ss_pred CCCCCeeehHHHHHHHHHHHHHHeeeccccCC-CCccccccCccC
Confidence 99999999999999999999999999999999 999999999999
No 4
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=100.00 E-value=4.2e-300 Score=2657.00 Aligned_cols=1005 Identities=71% Similarity=1.255 Sum_probs=921.7
Q ss_pred cccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCCCCCCCc
Q 001413 16 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGA 95 (1082)
Q Consensus 16 ~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~~~dd~~ 95 (1082)
+..++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+||||||+++||+|
T Consensus 11 ~~~~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~~~~~~~~~~~d~~~~~~~dd~~ 90 (1044)
T PLN02915 11 QSADAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYKRHKGCPRVEGDDEEGNDMDDFE 90 (1044)
T ss_pred cCCCcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchhhhcCCCCccCCccccccchhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCcc
Q 001413 96 SDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKR 175 (1082)
Q Consensus 96 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 175 (1082)
|||++..+++. +.|+|++|++|++.|.+++.+ .+++|++++ ++|++
T Consensus 91 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~----~~~~~------------------- 136 (1044)
T PLN02915 91 DEFQIKSPQDH------EPVHQNVFAGSENGDYNAQQW-----RPGGPAFSS----TGSVA------------------- 136 (1044)
T ss_pred hhhcccccccc------chhhhhhccCCCCcccccccc-----CCCCccccC----CCCcC-------------------
Confidence 99998542211 138899999998876442221 134666665 23332
Q ss_pred ccccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCccCccccccc
Q 001413 176 IHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDE 255 (1082)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (1082)
-+.+||+|| |||||+||||||+||+||+ |++.+.+. .++.+ ++.+++|+++|++
T Consensus 137 ------------~~~~~~~~~----~~g~~~wk~r~~~wk~~~~-~~~~~~~~-------~~~~~--~~~~~~~~~~~~~ 190 (1044)
T PLN02915 137 ------------GKDLEAERE----GYGNAEWKDRVDKWKTRQE-KRGLVNKD-------DSDDG--DDKGDEEEYLLAE 190 (1044)
T ss_pred ------------CCCcCcccc----CcCCHHHHHHHHHHHhhhh-hhcccccc-------ccCCC--CCCCCcccccccc
Confidence 025899997 8999999999999999997 44444331 11111 1223578899999
Q ss_pred cCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 001413 256 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 335 (1082)
Q Consensus 256 ~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 335 (1082)
.++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+
T Consensus 191 ~~~pL~~~~~i~~~~~~pyR~~~~~rlv~l~~fl~yRi~~~~~~a~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~ 270 (1044)
T PLN02915 191 ARQPLWRKVPIPSSKINPYRIVIVLRLVILCFFFRFRILTPAYDAYPLWLISVICEIWFALSWILDQFPKWFPINRETYL 270 (1044)
T ss_pred cCCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCcCCCchHHHHHHHHHHHHHHHHHHHccCccccccccccCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhh
Q 001413 336 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 415 (1082)
Q Consensus 336 drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~W 415 (1082)
|||++||++++++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 271 drL~~r~e~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FAk~W 350 (1044)
T PLN02915 271 DRLSMRFERDGEPNRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLLFDTLSETAEFARRW 350 (1044)
T ss_pred HHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhHHHHHHHHHHHHHhh
Confidence 99999999998899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCC
Q 001413 416 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTR 495 (1082)
Q Consensus 416 vPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~r 495 (1082)
|||||||+|||||||+||+++.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++|
T Consensus 351 vPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~ 430 (1044)
T PLN02915 351 VPFCKKHNIEPRAPEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTR 430 (1044)
T ss_pred cchhhhcCCCcCCHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHH
Q 001413 496 DHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREA 575 (1082)
Q Consensus 496 dhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~a 575 (1082)
|||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+|
T Consensus 431 dHp~IIqVll~~~~~~d~~g~~lP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 431 DHPGMIQVYLGSEGALDVEGKELPRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred CCccceEEeecCCCCcccccCccceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCC
Q 001413 576 MCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKP 655 (1082)
Q Consensus 576 mcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~ 655 (1082)
|||||||+.|+++|||||||+|+|+|++|||+|+|+||||++|+|+||+|||+||||||+|||+||||++||..++.++.
T Consensus 511 MCf~lD~~~g~~~afVQFPQrF~gidk~D~Y~n~~~Vffdi~~~GldGlqGP~YvGTGCffrR~aLYG~~pp~~~~~~~~ 590 (1044)
T PLN02915 511 MCFLMDPQLGKKLCYVQFPQRFDGIDRHDRYANRNVVFFDINMKGLDGIQGPVYVGTGCVFNRQALYGYDPPVSEKRPKM 590 (1044)
T ss_pred ceeeecCCCCCeeEEEeCCcccCCCCCCCCcCccceEEEeeecccccccCCcccccCCceeeeeeecCcCCccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999976655444
Q ss_pred CC-----cccccCCCccccCCcCcc-CC---------Cccc------------CCCCCCCCCccccchhhhhcccCCCCc
Q 001413 656 GL-----LSSLFGGSRKKNSKSSKK-GS---------DKKK------------SSKHVDPTVPIFSLEDIEEGVEGAGFD 708 (1082)
Q Consensus 656 ~~-----~~~~~~~~~~~~~~~~~~-~~---------~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 708 (1082)
++ .|+|||+.++++++..++ .. .+++ .....+++.+.|++++++++++| ++
T Consensus 591 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 668 (1044)
T PLN02915 591 TCDCWPSWCCCCCGGGRRGKSKKSKKGKKGRRSLLGGLKKRKKKGGGGGSMMGKKYGRKKSQAVFDLEEIEEGLEG--YD 668 (1044)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cc
Confidence 33 124566666554332111 00 0000 00123345678899999999988 44
Q ss_pred h-hhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHH
Q 001413 709 D-EKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGF 787 (1082)
Q Consensus 709 ~-~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~ 787 (1082)
+ |+++.++++.++++||+|.+|++|++.+.+|.+..++++++++||+||+||+||++|+||+||||.|+|+|||+.||+
T Consensus 669 ~~~~~~~~~~~~~~~~fG~S~~fi~S~~~~~~~~~~~~~~~s~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~ 748 (1044)
T PLN02915 669 ELEKSSLMSQKNFEKRFGQSPVFIASTLMEDGGLPEGTNPAALIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGF 748 (1044)
T ss_pred chhhhhhhhhhhhhhhcCCcHHHHHHHHHhhcCCCCCCCcHHHHHHHHhccccCCCccCchhHhhCccccccccHHHHHH
Confidence 4 778889999999999999999999999999999988999999999999999999999999999999999999999999
Q ss_pred HHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHH
Q 001413 788 KMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIP 867 (1082)
Q Consensus 788 rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp 867 (1082)
+||++||||+|++|++++|.|+||+|+.++++||+|||+|++||++++++|+++++.++|+++||++|+++++||+++++
T Consensus 749 rLH~rGWrSvY~~p~r~AF~GlAP~~L~d~L~Qr~RWA~G~lqIf~sr~~Pl~~g~~~~L~l~QRL~Yl~~~~yp~~slp 828 (1044)
T PLN02915 749 KMHCRGWKSVYCMPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFMSRHCPLWYAYGGKLKWLERLAYINTIVYPFTSIP 828 (1044)
T ss_pred HHHccCCcEEeeCCCcHHhcCcCCCCHHHHHHHHHHHhhhHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999877789999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHH
Q 001413 868 LLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLK 947 (1082)
Q Consensus 868 ~LiylllP~l~LltG~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk 947 (1082)
+++|+++|++||++|++++|.++..++++|+++|++++++.+++++|+|+++++||||||||+|+++|+|+||++++++|
T Consensus 829 ~liY~llP~l~LLtG~~i~P~~s~~~~~~f~~lfls~~~~~lLE~~wsG~si~~WWrnQq~w~I~~tSa~Lfavl~~iLK 908 (1044)
T PLN02915 829 LLAYCTIPAVCLLTGKFIIPTLNNLASIWFLALFLSIIATSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGLLK 908 (1044)
T ss_pred HHHHHHHHHHHHHcCCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888878888899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCCCeeecCCCCCCC-CCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHH
Q 001413 948 VLAGIDTNFTVTSKASDED-GDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVH 1026 (1082)
Q Consensus 948 ~L~g~~~~F~VTpKg~~~d-~~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~n 1026 (1082)
+|++++++|+||+|..+.+ +.++++|+|+||++++|+++++++|++|+++|+++++++++++||++++++|+++|+++|
T Consensus 909 vLg~se~~F~VTsK~~d~~~d~~~ely~F~~S~l~iP~ttllllNlvalv~Gi~~~i~~~~~~~g~l~~~l~~~~wvvv~ 988 (1044)
T PLN02915 909 VLGGVDTNFTVTSKAADDEADEFGELYLFKWTTLLIPPTTLIILNMVGVVAGVSDAINNGYGSWGPLFGKLFFAFWVIVH 988 (1044)
T ss_pred HhcccCCcceecCCccccchhhhccceeecceehHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence 9999999999999987532 346799999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001413 1027 LYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082 (1082)
Q Consensus 1027 l~pflkgL~gR~~~~P~~v~~~s~lla~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1082 (1082)
+|||++|||||++|+||||++||++||++||||||+||||+++++||++++|||+|
T Consensus 989 lyPf~kgLmgR~~r~P~~v~v~s~lla~~~~ll~v~~~~~~~~~~~~~~~~~~~~~ 1044 (1044)
T PLN02915 989 LYPFLKGLMGRQNRTPTIVVLWSILLASIFSLVWVRIDPFLPKQTGPILKQCGVEC 1044 (1044)
T ss_pred HHHHHHHHhCCCCCCCeeehHHHHHHHHHHHHHHheeccccCCCCCccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999
No 5
>PLN02189 cellulose synthase
Probab=100.00 E-value=2.3e-296 Score=2623.93 Aligned_cols=1009 Identities=73% Similarity=1.273 Sum_probs=932.1
Q ss_pred cccccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCC
Q 001413 10 AQVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDG 89 (1082)
Q Consensus 10 ~~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~ 89 (1082)
+++||+++.++|+||||||+||+|+|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| ||||
T Consensus 24 ~~~k~~~~~~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~r~kgs~~v~gd-~ee~ 102 (1040)
T PLN02189 24 EEPKPLRNLDGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYKRLKGSPRVEGD-DDEE 102 (1040)
T ss_pred cCCCCcccccCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchhhccCCCCcCCc-cccc
Confidence 456899999999999999999999999999999999999999999999999999999999999999999999999 7788
Q ss_pred CCCCCcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccCCCCCcccCCcc--ccCCCCCCCc--ccccc
Q 001413 90 DADDGASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQE--VSGELSAASP--EHLSM 165 (1082)
Q Consensus 90 ~~dd~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~ 165 (1082)
|+||+||||++.. ++.+.++++|+|+|++|++|++.+...+ .+++|++++||. +++|++..|+ +|+.+
T Consensus 103 ~~dd~~~e~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1040)
T PLN02189 103 DIDDIEHEFNIDD-EQDKNKHITEAMLHGKMSYGRGPDDDEN-------NQFPPVITGVRSRPVSGEFPIGSGYGHGEQM 174 (1040)
T ss_pred cchhhhhhccccc-cccchhHHHHHHhhhhcccCCCcccCCC-------cCCCcccccCccccccCCcCccccccccccc
Confidence 8999999999865 4455678899999999999998764422 245789999873 7888874222 34445
Q ss_pred CCCCCCCCccc---cccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCC
Q 001413 166 ASPGVGPGKRI---HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDAS 242 (1082)
Q Consensus 166 ~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (1082)
+++. .|||| ||+| .+.|.|||+||++ ||||||+||+||++ . ++ +
T Consensus 175 ~~~~--~~~~~~~~~~~~-----~~~~~~~~~~~~~--------wk~rv~~wk~~~~~------~-------~~---~-- 221 (1040)
T PLN02189 175 LSSS--LHKRVHPYPVSE-----PGSAKWDEKKEGG--------WKERMDDWKMQQGN------L-------GP---D-- 221 (1040)
T ss_pred cCCc--ccCccCcccccC-----CCcccCCcccccc--------HHHHHHHHHhhccc------C-------CC---C--
Confidence 5665 48999 4876 4567999999975 99999999999951 0 11 1
Q ss_pred CCCccCccccccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhh
Q 001413 243 TDVLVDDSLLNDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQ 322 (1082)
Q Consensus 243 ~~~~~~~~~~~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q 322 (1082)
++++++|.++++++++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|
T Consensus 222 ~~~~~~d~~~~~~~~~pL~~~~~~~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~W~~s~~~E~wFaf~Wll~q 301 (1040)
T PLN02189 222 PDDYDADMALIDEARQPLSRKVPIASSKVNPYRMVIVARLVVLAFFLRYRILHPVHDAIGLWLTSIICEIWFAVSWILDQ 301 (1040)
T ss_pred CCCCchhhhhcccCCCCceEEEecCccccchHHHHHHHHHHHHHHHHHHHhcCcCccchHHHHHHHHHHHHHHHHHHHcc
Confidence 23345678888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhH
Q 001413 323 FPKWLPVNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTF 402 (1082)
Q Consensus 323 ~~kw~Pv~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf 402 (1082)
++||+||+|+||+|||++||++|+++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++|||
T Consensus 302 ~~kw~Pv~R~t~~drL~~r~~~~~~~~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf 381 (1040)
T PLN02189 302 FPKWFPIDRETYLDRLSLRYEREGEPNMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLTF 381 (1040)
T ss_pred CcccccccceeCHHHHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHHH
Confidence 99999999999999999999998888999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccc
Q 001413 403 EALSETSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWV 482 (1082)
Q Consensus 403 ~al~Eaa~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~ 482 (1082)
|||.|||+|||+||||||||||||||||+||++|.|+++++++|+|++|||+|||||||||+|||+|+++++++|+++|.
T Consensus 382 ~AL~EAa~FA~~WvPFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~ 461 (1040)
T PLN02189 382 EALSETAEFARKWVPFCKKFSIEPRAPEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWI 461 (1040)
T ss_pred HHHHHHHHHHHhhcccccccCCCcCCHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecC
Q 001413 483 MQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDC 562 (1082)
Q Consensus 483 m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDc 562 (1082)
|+||++|||++++|||+||||+++++|+.|.+|++||+||||||||||||+||+||||||+||||||+||||||||||||
T Consensus 462 m~dGt~W~g~~~~dHp~IiQVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDC 541 (1040)
T PLN02189 462 MQDGTPWPGNNTRDHPGMIQVFLGHSGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDC 541 (1040)
T ss_pred eccCccCCCCCCCCCHHHHHHHhcCCCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhcc
Q 001413 563 DHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 642 (1082)
Q Consensus 563 Dh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 642 (1082)
|||+|||++||+||||||||+.|+++|||||||+|+|+|++|||+|+++||||++|+|+||+|||+||||||+|||+|||
T Consensus 542 DmY~Nns~alr~AMCfflDp~~g~~vAfVQFPQrF~~i~k~D~Ygn~~~vffdi~~~GlDGlqGP~YvGTGC~fRR~ALy 621 (1040)
T PLN02189 542 DHYINNSKAVREAMCFLMDPQIGRKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALY 621 (1040)
T ss_pred ccccCchHHHHHhhhhhcCCccCceeEEEeCccccCCCCCCCccCCccceeeeeeecccccCCCccccccCceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHH
Q 001413 643 GYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEK 722 (1082)
Q Consensus 643 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 722 (1082)
|++|+...+.+..++|++|||..++++++.+... +.. .+++++ .+++++..++++++++
T Consensus 622 G~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~------------~~~~~~--~~~~~~~~~~~~~~~~ 680 (1040)
T PLN02189 622 GYDPPKGPKRPKMVTCDCCPCFGRRKKKHAKNGL-------NGE------------VAALGG--MESDKEMLMSQMNFEK 680 (1040)
T ss_pred ccCcccccccccccccchhhhccccccccccccc-------ccc------------cccccc--cchhhhhhhhhhhhHh
Confidence 9999876555555555555555544322211110 000 011112 3445566788899999
Q ss_pred hccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCC
Q 001413 723 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPK 802 (1082)
Q Consensus 723 ~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~ 802 (1082)
+||+|.+|++|++.+.+|.+..+.++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|+
T Consensus 681 ~fG~S~~fi~S~~~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTED~~TG~rlH~rGWrSvY~~p~ 760 (1040)
T PLN02189 681 KFGQSAIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTDWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPK 760 (1040)
T ss_pred hhccchhhhhhhhhhhcCCCCCCCcHHHHHHHHHhhccccccCCchhhccCeeccccccHHHHHHHHHccCCceEecCCC
Confidence 99999999999999999998888899999999999999999999999999999999999999999999999999999988
Q ss_pred CCcccccCCCCHHHHHHHHHHhhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHh
Q 001413 803 RPAFKGSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLT 881 (1082)
Q Consensus 803 ~aaf~G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~-~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~Llt 881 (1082)
+++|.|+||+|+.++++||+|||+|++||+++++||++++++ ++|+++|||+|+++++||++++++++|+++|++||++
T Consensus 761 r~AF~GlAP~~L~~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~l~QRL~Yl~~~ly~~~sip~liY~~lP~l~Ll~ 840 (1040)
T PLN02189 761 RAAFKGSAPINLSDRLNQVLRWALGSVEIFFSRHSPLLYGYKGGNLKWLERFAYVNTTIYPFTSLPLLAYCTLPAICLLT 840 (1040)
T ss_pred cHHhcCcCCCCHHHHHHHHHHHhhhhHHHhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999998763 6799999999999999999999999999999999999
Q ss_pred CCccccccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCC
Q 001413 882 NKFIMPQISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSK 961 (1082)
Q Consensus 882 G~~iip~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpK 961 (1082)
|++++|.++++++++|+++|++++++.++|++|+|+++++||||||||+|+++|++|||++++++|+|++++++|.||+|
T Consensus 841 g~~i~p~vs~~~~~~fi~lf~~~~~~~llE~~~sG~s~~~WWrnQq~w~I~~~Sa~Lfavl~~ilKvlggs~~~F~VTsK 920 (1040)
T PLN02189 841 GKFIMPPISTFASLFFIALFMSIFATGILELRWSGVSIEEWWRNEQFWVIGGVSAHLFAVVQGLLKVLAGIDTNFTVTSK 920 (1040)
T ss_pred CCcccCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHhhhhhHHHHhhhHHHHHHHHHHHHHHhccCcccceeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 001413 962 ASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 1041 (1082)
Q Consensus 962 g~~~d~~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~ 1041 (1082)
..+ ++.++++|+|+||++++|++||+++|++|+++|+++++.+++++|+++++++|+++|+++|+|||+||||||++|+
T Consensus 921 ~~~-d~~~~~ly~f~~s~l~iP~ttl~i~Nlvaiv~g~~~~~~~~~~~~~~~~~~~~~~~wvv~~~~Pf~kgl~gR~~r~ 999 (1040)
T PLN02189 921 ATD-DDEFGELYAFKWTTLLIPPTTLLIINIVGVVAGISDAINNGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRT 999 (1040)
T ss_pred ccc-ccccccceeecceeHhHHHHHHHHHHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 887 4567899999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHhhheEecCCCCCCCCCCccccCCCC
Q 001413 1042 PTIVVVWSILLASIFSLLWVRVDPFTTRVTGPDVEQCGINC 1082 (1082)
Q Consensus 1042 P~~v~~~s~lla~~f~~lwv~i~~~~~~~~~~~~~~~~~~~ 1082 (1082)
||||++||++|+++||||||+|+||+++++||.+++||++|
T Consensus 1000 P~~v~v~s~ll~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~ 1040 (1040)
T PLN02189 1000 PTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDVKQCGINC 1040 (1040)
T ss_pred CeeehHHHHHHHHHHHHHHheecccccCCCCchhhccCcCC
Confidence 99999999999999999999999999999999999999999
No 6
>PLN02195 cellulose synthase A
Probab=100.00 E-value=2.4e-284 Score=2509.40 Aligned_cols=971 Identities=68% Similarity=1.219 Sum_probs=881.2
Q ss_pred ccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCCCCCCCcC
Q 001413 17 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADDGAS 96 (1082)
Q Consensus 17 ~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~~~dd~~~ 96 (1082)
++++|+||||||+||+++|||+|||||||+|||||||||||||||||+||||||||| ||||+||+||
T Consensus 3 ~~~~~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk-------------~~~~~~d~~~ 69 (977)
T PLN02195 3 ESGAPICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD-------------AENVFDDVET 69 (977)
T ss_pred cCCCccceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc-------------cccccchhhh
Confidence 578999999999999999999999999999999999999999999999999999998 3667889999
Q ss_pred ccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccCCCCCcccCCccccCCCCCCCccccccCCCCCCCCccc
Q 001413 97 DFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSHNHIPRLTGGQEVSGELSAASPEHLSMASPGVGPGKRI 176 (1082)
Q Consensus 97 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 176 (1082)
||+-+ .++++ ++|++|++.+ .+.+++|++++ . ++|+
T Consensus 70 ~~~~~------~~~~~-----~~~~~~~~~~---------~~~~~~~~~~~-~--~~~~--------------------- 105 (977)
T PLN02195 70 KHSRN------QSTMA-----SHLNDTQDVG---------IHARHISSVST-V--DSEL--------------------- 105 (977)
T ss_pred hhccc------hhhhh-----hhcccCcCCC---------CCCcccccccc-C--CCcc---------------------
Confidence 99421 23332 6777777532 11123454543 1 1111
Q ss_pred cccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCccCcccccccc
Q 001413 177 HYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLLNDEA 256 (1082)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1082)
+. +|||++||||||+||.||+||+.++.+... .| | +.+ ++++++|+++ ||.
T Consensus 106 ----------------~~------~~~~~~wk~r~~~wk~~~~~~~~~~~~~~~-~~--~-~~~--~~~~~~~~~~-~~~ 156 (977)
T PLN02195 106 ----------------ND------EYGNPIWKNRVESWKDKKNKKKKSAKKKEA-HK--A-QIP--PEQQMEEKPS-ADA 156 (977)
T ss_pred ----------------cC------ccCCHHHHHHHHHHHHhhhhhccccccccc-cc--c-CCC--CccCCccccc-ccc
Confidence 11 399999999999999999887775554321 22 2 222 2334567776 999
Q ss_pred CCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhh
Q 001413 257 RQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLD 336 (1082)
Q Consensus 257 ~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~d 336 (1082)
++||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|+||+|
T Consensus 157 ~~pL~~~~~i~~~~~~pyR~~~~~~l~~l~~~l~yRi~~~~~~~~~~Wl~s~~cE~wFaf~Wll~q~~Kw~Pv~R~t~~d 236 (977)
T PLN02195 157 YEPLSRVIPIPRNKLTPYRAVIIMRLIILGLFFHYRITNPVDSAFGLWLTSVICEIWFAFSWVLDQFPKWSPINRETYID 236 (977)
T ss_pred cCCceEEEecCcccchhHHHHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHHHHHhcccccccccceECHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhh
Q 001413 337 RLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWV 416 (1082)
Q Consensus 337 rL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~Wv 416 (1082)
||++||++|+++++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+|+||||||.|||+|||+||
T Consensus 237 rL~~r~~~~~~~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LTf~AL~EAa~FA~~Wv 316 (977)
T PLN02195 237 RLSARYEREGEPSQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLSFESLVETAEFARKWV 316 (977)
T ss_pred HHHHHhccCCCcccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHHHHHHHHHHHHHHhhc
Confidence 99999999988999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCC
Q 001413 417 PFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRD 496 (1082)
Q Consensus 417 PFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rd 496 (1082)
||||||||||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|+++++++|+++|.|+|||+|||+++||
T Consensus 317 PFCkK~~IepRaPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~~~~~~~~~~m~d~t~W~g~~~~d 396 (977)
T PLN02195 317 PFCKKYSIEPRAPEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKAQKTPEEGWTMQDGTPWPGNNTRD 396 (977)
T ss_pred ccccccCCCcCCHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhcccCCcccccccCCccCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001413 497 HPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 576 (1082)
Q Consensus 497 hp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am 576 (1082)
||+|||||++++|+.|.+|++||+||||||||||||+||+||||||+++||||+|||||||||||||||+|||++||+||
T Consensus 397 Hp~IIqVll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AM 476 (977)
T PLN02195 397 HPGMIQVFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAM 476 (977)
T ss_pred CcchhhhhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCC
Q 001413 577 CFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPG 656 (1082)
Q Consensus 577 cff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~ 656 (1082)
|||+||+.|+++|||||||+|+|+|++|+|+|++++|||++|+|+||+|||+||||||+|||+||||++|+..++.++.+
T Consensus 477 Cf~~D~~~g~~va~VQ~PQ~F~~i~~~D~y~~~~~~ffd~~~~g~dglqGP~YvGTGC~fRR~ALyG~~p~~~~~~~~~~ 556 (977)
T PLN02195 477 CFLMDPVVGRDVCYVQFPQRFDGIDRSDRYANRNVVFFDVNMKGLDGIQGPVYVGTGCVFNRQALYGYGPPSLPRLPKSS 556 (977)
T ss_pred hhccCcccCCeeEEEcCCcccCCCCCCCCCCcccceeeeeeeccccccCCccccccCceeeehhhhccCccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998765555544
Q ss_pred C-cccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHh
Q 001413 657 L-LSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTL 735 (1082)
Q Consensus 657 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal 735 (1082)
+ |++|||+.+++....++.. .+..++.+.+.+++.++++++ ..++|++..+++++++++||+|.+|++|++
T Consensus 557 ~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~fG~S~~fi~S~~ 628 (977)
T PLN02195 557 SSSSSCCCPTKKKPEQDPSEI---YRDAKREDLNAAIFNLREIDN-----YDEYERSMLISQMSFEKTFGLSSVFIESTL 628 (977)
T ss_pred cccccccccccccccccchhh---ccccccccccccccccccccc-----cchhhhhhhhhhhHHHHhhcccHHHHHHHH
Confidence 3 4345556544322111010 111122222233344444332 123467778899999999999999999999
Q ss_pred hhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHH
Q 001413 736 MENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLS 815 (1082)
Q Consensus 736 ~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~ 815 (1082)
.+.+|.+..++++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|.+++|.|+||+|+.
T Consensus 629 ~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evGw~YGSvTEDv~TG~rlH~rGWrSvY~~p~r~af~G~AP~~L~ 708 (977)
T PLN02195 629 MENGGVPESANPSTLIKEAIHVISCGYEEKTEWGKEIGWIYGSVTEDILTGFKMHCRGWRSIYCMPVRPAFKGSAPINLS 708 (977)
T ss_pred HHhcCCCCCCCcHHHHHHHHhhhcccCccccchhhhcCeeccceecHHHHHHHHHccCCcEEecCCccHHhcccCCCCHH
Confidence 99999998888999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHhhccchhHhhhcccccccccC-CCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHH
Q 001413 816 DRLNQVLRWALGSVEILFSRHCPIWYGYG-GRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLAS 894 (1082)
Q Consensus 816 ~~lkQR~RWA~G~lQIllsk~~Pl~~g~~-~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~~~l 894 (1082)
++++||+|||+|++||+++++||+++++. ++|+++|||+|+++++||++++++++|+++|++||++|+++||.++.+++
T Consensus 709 ~~L~Qr~RWA~G~lqI~~sr~nPl~~g~~~~~L~~~QRL~Yl~~~ly~~~slp~liY~~lP~l~Ll~G~~i~P~vs~~~~ 788 (977)
T PLN02195 709 DRLHQVLRWALGSVEIFLSRHCPLWYGYGGGRLKWLQRLAYINTIVYPFTSLPLIAYCTLPAICLLTGKFIIPTLSNLAS 788 (977)
T ss_pred HHHHHHHHHHhchhhhhhccCCccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeecccchHHHH
Confidence 99999999999999999999999998764 78999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceee
Q 001413 895 IVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYM 974 (1082)
Q Consensus 895 ~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~ 974 (1082)
++|+++|+++++++++|++|+|+++++||||||||+|+++|+||||++++++|+|++++++|.||+|..+ +++++++|+
T Consensus 789 ~~f~~lfl~~~~~~~lE~~~sG~si~~WWrnqq~w~I~~tSa~Lfavl~~llKvLggs~~~F~VTsK~~d-d~~~~~~Y~ 867 (977)
T PLN02195 789 MLFLGLFISIILTSVLELRWSGVSIEDLWRNEQFWVIGGVSAHLFAVFQGFLKMLAGLDTNFTVTAKAAD-DTEFGELYM 867 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHcCCCccceecccccc-ccchhccee
Confidence 9999999999999999999999999999999999999999999999999999999999999999999887 557899999
Q ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 001413 975 FKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLAS 1054 (1082)
Q Consensus 975 f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~~s~lla~ 1054 (1082)
|+||++++|++||+++|++|+++|+++++++++++||++++++|+++|+++|+|||+||||||++|+||||++||++|++
T Consensus 868 f~~S~l~iP~ttl~ilNlvaiv~g~~~~i~~~~~~~g~l~~~~~~~~wvv~~~~Pf~kgl~gR~~r~P~~v~v~s~ll~~ 947 (977)
T PLN02195 868 VKWTTLLIPPTSLLIINLVGVVAGFSDALNKGYEAWGPLFGKVFFAFWVILHLYPFLKGLMGRQNRTPTIVVLWSVLLAS 947 (977)
T ss_pred ccceehhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCeeehHHHHHHHH
Confidence 99999999999999999999999999999989999999999999999999999999999999999999999999999999
Q ss_pred HHHhhheEecCCCCCCCCCC-cccc-CCCC
Q 001413 1055 IFSLLWVRVDPFTTRVTGPD-VEQC-GINC 1082 (1082)
Q Consensus 1055 ~f~~lwv~i~~~~~~~~~~~-~~~~-~~~~ 1082 (1082)
+||||||+||||+++++||+ +++| |++|
T Consensus 948 ~~~l~~v~~~~~~~~~~~~~~~~~~~~~~~ 977 (977)
T PLN02195 948 VFSLVWVKINPFVGKTDTTTLSNNCISIDC 977 (977)
T ss_pred HHHHHHeeccccccCCCCCchhhccCCCCC
Confidence 99999999999999999999 9999 9999
No 7
>PLN02248 cellulose synthase-like protein
Probab=100.00 E-value=1.4e-244 Score=2176.66 Aligned_cols=924 Identities=52% Similarity=0.965 Sum_probs=798.7
Q ss_pred cccCCccccc--cCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCCCCCC
Q 001413 16 KNVGGQVCQI--CGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDADD 93 (1082)
Q Consensus 16 ~~~~~~~Cqi--Cgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~~~dd 93 (1082)
...++..|.+ |+.+++.+++|+...+| ||+|.|||+||-++.++| +.||+||++||.+ | ++|+.+|
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~--------~--~~~~~~~ 187 (1135)
T PLN02248 120 AGAKGSSCAMPGCDGKVMRDERGEDLLPC-ECGFKICRDCYIDAVKSG-GICPGCKEPYKVT--------D--LDDEVPD 187 (1135)
T ss_pred CCCCCCcccccCcccccccccccccCCcc-cccchhHHhHhhhhhhcC-CCCCCCccccccc--------c--ccccccc
Confidence 3356789998 99999999999999999 999999999999999996 7999999999775 3 2222222
Q ss_pred CcCccCCCccchhhhhhhHHHhhhhhcccCCCCCCCCCCCCccccC-CCCCcccCCccccCCCCCCCccccccCCCCCCC
Q 001413 94 GASDFNYSSENQNQKQKISERMLSWHMRYGQGEDASAPKYDNEVSH-NHIPRLTGGQEVSGELSAASPEHLSMASPGVGP 172 (1082)
Q Consensus 94 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1082)
.+++ ... ++.. + .++.+...+. .+.+++..+| +||++ |+
T Consensus 188 ~~~~----------~~~----~~~~----~------~~~~~~~~~~~~~~~~~~~~~--~~~~~-----~~--------- 227 (1135)
T PLN02248 188 ESSG----------ALP----LPPP----G------GSKMDRRLSLMKSNSLLMRSQ--TGDFD-----HN--------- 227 (1135)
T ss_pred cccc----------ccc----CCCC----C------CcccccccccccccchhccCC--CCCCC-----Cc---------
Confidence 2111 111 1100 0 0001110000 0123455556 67776 55
Q ss_pred CccccccCCCCCCCCccccCCCCCCCCCCCccccccchhhhhhhhccccccccCCCCCcccCCCCCCCCCCCCccCcccc
Q 001413 173 GKRIHYSGDINQSPSIRVVDPVREFGSPGLGNVAWKERVDGWKMKQEKNVVPMSTGQATSERGGGDIDASTDVLVDDSLL 252 (1082)
Q Consensus 173 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (1082)
||++++| ++|||||+.|++... . |++.+ + .+ ...+
T Consensus 228 ----------------~w~~~~~--~~~~~~~~~~~~~~~-------------~---------~~~~~---~-~~-~~~~ 262 (1135)
T PLN02248 228 ----------------RWLFETK--GTYGYGNAVWPKDDG-------------Y---------GDDGG---G-GG-PGEF 262 (1135)
T ss_pred ----------------eeeeecc--cccccccccCccccc-------------c---------CCCCC---c-cc-cccc
Confidence 7999998 999999999997642 1 11101 0 11 1146
Q ss_pred ccccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccc
Q 001413 253 NDEARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRE 332 (1082)
Q Consensus 253 ~~~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~ 332 (1082)
||++|+||+||+++++++|+|||++++++|+++++||+||++|++.+++|+|+++++||+||+|+|+|+|++||+||+|.
T Consensus 263 ~~~~~~pL~~~~~i~~~il~pyRl~~~~rlv~l~~fl~~Ri~~~~~~~~~~W~~s~~cE~WFaf~Wll~q~~Kw~Pv~R~ 342 (1135)
T PLN02248 263 MDKPWRPLTRKVKISAAILSPYRLLILIRLVVLGLFLTWRVRNPNEDAMWLWGMSVVCEIWFAFSWLLDQLPKLCPINRA 342 (1135)
T ss_pred cccCCCCceeeeecCcccccHHHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHhccccccccccc
Confidence 89999999999999999999999999999999999999999999989999999999999999999999999999999999
Q ss_pred hhhhHhhhhhccCC-----CCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhh
Q 001413 333 TYLDRLSLRYEREG-----EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSE 407 (1082)
Q Consensus 333 ~~~drL~~r~~~~~-----~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~E 407 (1082)
||+|||++||+.|+ ++++||+|||||||+||.||||++|+||||||||+|||+|||+|||||||+++||||||.|
T Consensus 343 t~~~rL~~r~e~~~~~~p~g~s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKLacYvSDDGgS~LTf~AL~E 422 (1135)
T PLN02248 343 TDLAVLKEKFETPSPSNPTGRSDLPGIDVFVSTADPEKEPPLVTANTILSILAADYPVEKLACYLSDDGGALLTFEAMAE 422 (1135)
T ss_pred cCHHHHHHHhccccccCCCCcccCCcceeEeecCCCccCcchHHHHHHHHHhcccccccceeEEEecCCchHHHHHHHHH
Confidence 99999999998654 3678999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHH---------------h
Q 001413 408 TSEFARKWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVA---------------K 472 (1082)
Q Consensus 408 aa~FA~~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~---------------~ 472 (1082)
||+|||+||||||||+|||||||+||++|.|+++++.+|+|++|||+|||||||||+|||+|++ +
T Consensus 423 Aa~FA~~WVPFCrKh~IepRaPe~YFs~~~~~~~~~~~~~F~~d~r~~KreYee~K~RIe~l~~~~~~rs~~~n~~~e~~ 502 (1135)
T PLN02248 423 AASFARIWVPFCRKHDIEPRNPESYFSLKRDPTKNKVRPDFVKDRRRVKREYDEFKVRINGLPDSIRRRSDAYNAREEIK 502 (1135)
T ss_pred HHHHHHhhcchhhhcCCCcCCHHHHhccCCCcccCccchhHHHHHHHHHHHHHHHHHHHHhhhhhccccccccchhHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999964 1
Q ss_pred ---------------hccCCcccccccCCCCCCCCC--------CCCCccceeeecccCC------------CCCCC--C
Q 001413 473 ---------------AQKIPEEGWVMQDGTPWPGNN--------TRDHPGMIQVFLGENG------------GLDAE--G 515 (1082)
Q Consensus 473 ---------------~~~~p~e~w~m~dgt~w~~~~--------~rdhp~iiqv~l~~~g------------~~d~~--~ 515 (1082)
++++|+++| |+|||+|||+| ++|||+||||||++++ ..|.+ +
T Consensus 503 ~~~~~~~~~~~~~~e~~~~~~~~w-m~dgt~wpg~W~~~~~~~~~~dH~~IIqVll~~p~~e~~~g~~~~~~~~d~~~~d 581 (1135)
T PLN02248 503 AKKKQRESGGGDPSEPLKVPKATW-MADGTHWPGTWLSSAPDHSRGDHAGIIQVMLKPPSDEPLMGSADDENLIDFTDVD 581 (1135)
T ss_pred hhhhhhhhccccccccccccccee-eccCCcCCCcccCcccCCCCCCCcceeEEeccCCCcccccCcccccccccccccc
Confidence 246789999 99999999984 5699999999998653 11322 3
Q ss_pred CCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCc
Q 001413 516 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 595 (1082)
Q Consensus 516 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ 595 (1082)
.+||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||++||+||||||||+ |+++|||||||
T Consensus 582 ~~lP~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD~~-g~~vAfVQFPQ 660 (1135)
T PLN02248 582 IRLPMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMDRG-GDRICYVQFPQ 660 (1135)
T ss_pred cccceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheecCC-CCceEEEcCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999997 99999999999
Q ss_pred cccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCcc
Q 001413 596 RFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKK 675 (1082)
Q Consensus 596 ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1082)
+|+|+|++|||+||++||||++|+|+||+|||+||||||+|||+||||++||..++..+. | +|||+.+++.++.+..
T Consensus 661 rF~~I~k~D~Ygn~~~Vffdi~~~GlDGlqGP~YvGTGCffRR~ALYG~~pp~~~~~~~~--~-~~~~~~~~~~~~~~~~ 737 (1135)
T PLN02248 661 RFEGIDPSDRYANHNTVFFDVNMRALDGLQGPVYVGTGCLFRRIALYGFDPPRAKEHSGC--F-GSCKFTKKKKKETSAS 737 (1135)
T ss_pred ccCCCCCCCccCCcceeeeeeeeccccccCCccccccCceeeehhhcCcCCccccccccc--c-cccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999999876443222 2 3333443332111100
Q ss_pred CCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhh-hcCCCCC-----------
Q 001413 676 GSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLM-ENGGVPQ----------- 743 (1082)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~-e~GG~p~----------- 743 (1082)
. ..+ +++++ .++ .++.+.++++||+|..|++|+.. +..|.+.
T Consensus 738 ----------~--~~~---~~~~~-------~~~----~~~~~~~~~rfG~S~~fi~S~~~a~~q~~~~~~~~~~~~~~~ 791 (1135)
T PLN02248 738 ----------E--PEE---QPDLE-------DDD----DLELSLLPKRFGNSTMFAASIPVAEFQGRPLADHPSVKNGRP 791 (1135)
T ss_pred ----------c--ccc---ccccc-------ccc----hhhhhhhhhhhccchhhhhhhHHHhhcccccccccccccccc
Confidence 0 000 11111 011 13567789999999999999853 2222221
Q ss_pred --------CcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHH
Q 001413 744 --------SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLS 815 (1082)
Q Consensus 744 --------~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~ 815 (1082)
...++++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+|++|++.+|.|++|+|+.
T Consensus 792 ~~~~~~~~~~~~~~~l~eA~~V~sC~YE~~T~WG~evG~~YGSvTEDv~TGlrLH~rGWrSvY~~p~r~AF~GlAP~~L~ 871 (1135)
T PLN02248 792 PGALTVPREPLDAATVAEAISVISCWYEDKTEWGDRVGWIYGSVTEDVVTGYRMHNRGWRSVYCVTKRDAFRGTAPINLT 871 (1135)
T ss_pred cccccccccCCcHHHHHHHHhhcccccccCCchhhhcCeeecceechHHHHHHHHhcCCceEeCCCChHhhcCCCCCCHH
Confidence 223568999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred HHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHH
Q 001413 816 DRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASI 895 (1082)
Q Consensus 816 ~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~~~l~ 895 (1082)
++++||+|||+|++||++++++|++. .++|++.|||+|+++++||++++++++|+++|++||++|++++|+.+..+++
T Consensus 872 d~L~Qr~RWA~G~lQIf~sr~~Pll~--~~~Lsl~QRL~Yl~~~lypf~Slp~liY~llP~l~LLtGi~~~p~~~~~fl~ 949 (1135)
T PLN02248 872 DRLHQVLRWATGSVEIFFSRNNALLA--SRRLKFLQRIAYLNVGIYPFTSIFLIVYCFLPALSLFSGQFIVQTLNVTFLV 949 (1135)
T ss_pred HHHHHHHHHhhchHHHHhccCCcccc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccHHHHH
Confidence 99999999999999999999999985 4689999999999999999999999999999999999999999987665566
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCC--CCcccee
Q 001413 896 VFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDED--GDFTELY 973 (1082)
Q Consensus 896 ~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d--~~~~~ly 973 (1082)
+++.++++++++.+++++|+|+++++||||||||+|++++++++|++++++|+|++++++|+||+|..+.+ ..++++|
T Consensus 950 yll~l~l~~~~~sllE~~wsGvsl~~WWrnQq~W~I~~tSA~L~A~l~aiLKvLggs~~~F~VTsK~~~~d~~~~~a~ly 1029 (1135)
T PLN02248 950 YLLIITITLCLLAVLEIKWSGITLEEWWRNEQFWLIGGTSAHLAAVLQGLLKVIAGIEISFTLTSKSAGDDEDDEFADLY 1029 (1135)
T ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHhhhhheeeehhhHHHHHHHHHHHHHHhcCccccceeCCcccccccccccchhe
Confidence 66567788899999999999999999999999999999999999999999999999999999999987643 2478999
Q ss_pred ecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001413 974 MFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLA 1053 (1082)
Q Consensus 974 ~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~~s~lla 1053 (1082)
+|+|+++++|+++++++|++|+++|++|++.++++.|+.+++++|+++|+++|+|||+||||||++|+||||++||+||+
T Consensus 1030 ~f~wS~L~iP~ttl~llNLvAivvGv~R~i~g~~~~~~~l~g~l~~s~Wvv~~lyPf~kGL~gR~gr~P~iv~v~s~ll~ 1109 (1135)
T PLN02248 1030 IVKWTSLMIPPITIMMVNLIAIAVGVSRTIYSEIPQWSKLLGGVFFSFWVLAHLYPFAKGLMGRRGRTPTIVYVWSGLLS 1109 (1135)
T ss_pred ecCcchHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhHHHHHHHHHHHHHHHHHHHHHhccCCCCCeehHHHHHHHH
Confidence 99999999999999999999999999999988788899999999999999999999999999999999999999999999
Q ss_pred HHHHhhheEecCCCCC
Q 001413 1054 SIFSLLWVRVDPFTTR 1069 (1082)
Q Consensus 1054 ~~f~~lwv~i~~~~~~ 1069 (1082)
+++|||||+|+||+..
T Consensus 1110 ~~~sll~v~~~~~~~~ 1125 (1135)
T PLN02248 1110 ITISLLWVAISPPSGA 1125 (1135)
T ss_pred HHHHHHheEeccccCc
Confidence 9999999999999854
No 8
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=100.00 E-value=2.3e-218 Score=1904.24 Aligned_cols=719 Identities=71% Similarity=1.260 Sum_probs=687.9
Q ss_pred eeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhh
Q 001413 354 VDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYF 433 (1082)
Q Consensus 354 VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yF 433 (1082)
|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+||||||||+|||||||+||
T Consensus 1 vDvFv~TaDP~~EPp~~~~nTvLS~lA~dYP~~kls~YvSDDg~s~ltf~al~Ea~~FA~~WvPFCkk~~ie~R~P~~YF 80 (720)
T PF03552_consen 1 VDVFVCTADPEKEPPLVTANTVLSILAYDYPVEKLSCYVSDDGGSMLTFYALMEAAKFAKHWVPFCKKYNIEPRAPEAYF 80 (720)
T ss_pred CceEEecCCCCcCCCeeeHHHHHHHHhhcCCccceeEEEecCCchHHHHHHHHHHHHHHhhhcchhhccCCccCCHHHHh
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCC
Q 001413 434 AQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDA 513 (1082)
Q Consensus 434 s~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~ 513 (1082)
+++.|+++++.+|+|++|||+|||||||||+|||+|+++.+++|+++|+|+|||+|||++++|||+||||+++++|+.|+
T Consensus 81 ~~~~~~~~~~~~~~f~~e~~~~k~~ye~~k~ri~~~~~~~~~~~~~~~~~~~~~~w~~~~~~dH~~iiqv~~~~~~~~~~ 160 (720)
T PF03552_consen 81 SSKIDPLKDKVQPEFVKERRAMKREYEEFKVRIEALVAKIQKVPEEGWTMQDGTPWPGNTRRDHPGIIQVLLDNPGGKDV 160 (720)
T ss_pred ccCCCcccCCcChhHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccceeccCCCcCCCCCCcCChhheEeeccCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEec
Q 001413 514 EGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQF 593 (1082)
Q Consensus 514 ~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~ 593 (1082)
+|++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|+||||||||+.|+++|||||
T Consensus 161 ~g~~lP~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~~g~~~~~vQf 240 (720)
T PF03552_consen 161 DGNELPMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPKIGKKIAFVQF 240 (720)
T ss_pred ccCcCCeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCCCCCeeEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 001413 594 PQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 673 (1082)
Q Consensus 594 PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1082)
||+|+|+|++|+|+|++++||+++|+|+||+|||+||||||+|||+||||++||...+..+.++||+|||++|+|+++.+
T Consensus 241 pq~f~~i~~~d~y~~~~~~~~~~~~~g~dG~~gp~y~Gtgc~~rR~al~g~~~~~~~~~~~~~~~~~~~c~~~~k~~~~~ 320 (720)
T PF03552_consen 241 PQRFDGIDKNDRYGNQNRVFFDINMRGLDGLQGPFYVGTGCFFRREALYGFDPPRYEKDPEKTCCCCSCCFGRRKKKKSK 320 (720)
T ss_pred CceeCCCCcCCCCCccceeeeeccccccccCCCceeeecCcceechhhhCCCCCchhcccCcceeeeecccCCccccccc
Confidence 99999999999999999999999999999999999999999999999999999998887777665555555555444332
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001413 674 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 753 (1082)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 753 (1082)
++. +++..++.+++.+++++++++|++++ .++|++..+++++|+++||+|++|++|+..+.|+.+.+.+++++|+|
T Consensus 321 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~FG~S~~fi~S~~~~~~~~~~~~~~~~~L~E 396 (720)
T PF03552_consen 321 KKP--KKRASKRRESSSPIFALEDIEEGAEG--SDEERSSLMSQKELEKKFGQSPEFIASTLMAQGGVPRSPSPASLLEE 396 (720)
T ss_pred ccc--hhcccccccccccccccccccccccc--chhhhhhcchhHHHHHHhcCCHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence 221 12334566778899999999998877 77888999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhh
Q 001413 754 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILF 833 (1082)
Q Consensus 754 ai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQIll 833 (1082)
|+||+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|+++||.|.||+|+.+.+.|++|||.|++||++
T Consensus 397 A~~V~sC~YE~~T~WGkevGwiYGSvtEDv~TG~rmH~rGWrSvYc~p~r~AF~G~AP~nL~d~L~Q~~RWA~GslEI~f 476 (720)
T PF03552_consen 397 AIHVASCGYEDKTEWGKEVGWIYGSVTEDVLTGFRMHCRGWRSVYCNPKRPAFLGSAPINLSDRLHQVKRWATGSLEIFF 476 (720)
T ss_pred HHHHhcCCccccCCcccccceEEEecccccccceeEeeCceeeEEeccccchhcccCCCChhhhceeeeeEeeeeEeeeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHHHHHHHHHhhh
Q 001413 834 SRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLSIFATGILEMR 913 (1082)
Q Consensus 834 sk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~~~l~~fi~lflsi~~~~lLe~r 913 (1082)
+||||+|+++.++|+++|||+|++.++|+++++|+++|+++|++||++|++++|++++.++++|+++|+++++++++|++
T Consensus 477 Sr~~Pl~~g~~~rL~~lQrLaY~~~~~ypl~Sipll~Y~~lPalcLLtG~~i~Pk~s~~~~~~f~~lf~~~~~~~llE~~ 556 (720)
T PF03552_consen 477 SRHCPLWYGYGGRLKFLQRLAYLNYMLYPLTSIPLLCYCFLPALCLLTGIFIFPKVSSPWFIYFLALFVSIYAYSLLEFR 556 (720)
T ss_pred hcCCchhccCCCCCcHHHHHHHHHHhhhHHHHHHHHHHHHhHHHHhhCCCcccCccccchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999877899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCC-CCCCccceeecccccchHHHHHHHHHHH
Q 001413 914 WSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD-EDGDFTELYMFKWTTLLIPPTTLLVINL 992 (1082)
Q Consensus 914 wsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~-~d~~~~~ly~f~ws~LliP~~~LlilnL 992 (1082)
|+|+++++||||||||+|.++++|+||++++++|+|++++++|+||+|..+ +++.++++|.|+|+++++|++||+++|+
T Consensus 557 wsG~si~~WWrnQq~W~I~~tSa~LfAvl~~iLK~lg~s~t~F~VTsK~~dde~~~~~ely~f~wS~LfiP~tTllilNL 636 (720)
T PF03552_consen 557 WSGVSIREWWRNQQFWMIGGTSAHLFAVLQGILKVLGGSETSFTVTSKVSDDEDDKYAELYIFKWSPLFIPPTTLLILNL 636 (720)
T ss_pred hccCcHHHhhcccceeeehhhHHHHHHHHHHHHHHHcCCccceeecccccccccccccccccccccchhhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999976 3445789999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHhhheEecCCCCCCCC
Q 001413 993 VGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLWVRVDPFTTRVTG 1072 (1082)
Q Consensus 993 vaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~~s~lla~~f~~lwv~i~~~~~~~~~ 1072 (1082)
+|+++|+++++++++++|+++++++|+++|+++|+|||+||||||++|+||||++||++||++|+||||+||||+++++|
T Consensus 637 va~v~Gi~r~i~~g~~~~g~l~g~lf~~~wVvv~lyPf~kGL~~R~~r~P~~v~v~S~lla~i~~llwv~i~~~~~~~~~ 716 (720)
T PF03552_consen 637 VAFVVGISRAINSGYGSWGPLLGQLFFSFWVVVHLYPFLKGLFGRKDRIPTSVIVWSVLLASIFSLLWVRIDPFLAKTTG 716 (720)
T ss_pred HHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHhhHHHHhhhcccCCcceeehHHHHHHHHHHHHHheecccCcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcc
Q 001413 1073 PDVE 1076 (1082)
Q Consensus 1073 ~~~~ 1076 (1082)
|+++
T Consensus 717 ~~~~ 720 (720)
T PF03552_consen 717 PDLK 720 (720)
T ss_pred CCCC
Confidence 9975
No 9
>PLN02190 cellulose synthase-like protein
Probab=100.00 E-value=2.8e-199 Score=1745.54 Aligned_cols=726 Identities=36% Similarity=0.644 Sum_probs=656.7
Q ss_pred cCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHhhcccccccccchhh
Q 001413 256 ARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNAIALWLISVICEIWFAISWIFDQFPKWLPVNRETYL 335 (1082)
Q Consensus 256 ~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~ 335 (1082)
+..||+++++++.+. ||++.++++++++.||+||++|+++++ ++|+++++||+||+|+|+|+|++||+|++|.|+|
T Consensus 7 ~~~pL~~~~~~~~~~---~r~~~~~vl~~~~~~l~~R~~~~~~~~-~~W~~~~~~E~wf~~~WlL~q~~kw~pv~r~~~p 82 (756)
T PLN02190 7 SLPPLCERISHKSYF---LRAVDLTILGLLFSLLLYRILHMSEND-TVWLVAFLCESCFSFVWLLITCIKWSPAEYKPYP 82 (756)
T ss_pred CCCCceeeeeccchh---HHHHHHHHHHHHHHHHHHHHhCCCccc-HHHHHHHHHHHHHHHHHHHhccceeeecCCCCCc
Confidence 447999999999984 999999999999999999999999887 6899999999999999999999999999999999
Q ss_pred hHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhh
Q 001413 336 DRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKW 415 (1082)
Q Consensus 336 drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~W 415 (1082)
|||++||+ +||+||||||||||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||+|
T Consensus 83 ~~l~~r~~------~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT~~al~EAa~FA~~W 156 (756)
T PLN02190 83 DRLDERVH------DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLTYFSLKEASKFAKIW 156 (756)
T ss_pred HHHHHhhc------cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhHHHHHHHHHHHHhhh
Confidence 99999983 699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCC--CCCCCCC
Q 001413 416 VPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG--TPWPGNN 493 (1082)
Q Consensus 416 vPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dg--t~w~~~~ 493 (1082)
|||||||||||||||+||+.+.+ .+.+++|++|||+|||||||||+||++.+ +...|.++++ .+|++++
T Consensus 157 vPFCrK~~IepRaPe~YF~~~~~---~~~~~~f~~e~~~~K~eYee~k~ri~~a~------~~~~~~~~~~~~~~~~~~~ 227 (756)
T PLN02190 157 VPFCKKYNVRVRAPFRYFLNPPV---ATEDSEFSKDWEMTKREYEKLSRKVEDAT------GDSHWLDAEDDFEAFSNTK 227 (756)
T ss_pred cccccccCCCcCCHHHHhcCCCC---CCCCchhHHHHHHHHHHHHHHHHHHHhhc------cCCCCcccCCcccccCCCC
Confidence 99999999999999999998643 33458999999999999999999999864 3466777665 6899999
Q ss_pred CCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHH
Q 001413 494 TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALR 573 (1082)
Q Consensus 494 ~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr 573 (1082)
++|||+||||+++++|+ +.++++||+||||||||||||+||+||||||+|+||||+|||||||||||||||+|||+++|
T Consensus 228 ~~dH~~iiqVll~~~~~-~~~~~~lP~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r 306 (756)
T PLN02190 228 PNDHSTIVKVVWENKGG-VGDEKEVPHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVR 306 (756)
T ss_pred CCCCccceEEEecCCCC-ccccccCceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHH
Confidence 99999999999999775 45789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCC-ccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCC
Q 001413 574 EAMCFMMDPNLG-KHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKH 652 (1082)
Q Consensus 574 ~amcff~DP~~g-~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~ 652 (1082)
+||||||||+.+ +++|||||||+|+ |+|+|+++||||++|+|+||+|||+|+||||+|||+||||++||...+.
T Consensus 307 ~AmCf~ld~~~~~~~~~fVQfPQ~F~-----D~y~n~~~v~f~~~~~GldGlqGP~YvGTGCffrR~alyG~~p~~~~~~ 381 (756)
T PLN02190 307 QAMCIFLQKSKNSNHCAFVQFPQEFY-----DSNTNELTVLQSYLGRGIAGIQGPIYIGSGCFHTRRVMYGLSSDDLEDD 381 (756)
T ss_pred HhhhhhcCCCCCCCeeEEEeCchhhc-----cccCccceEEEEEeeccccccCCcccccCCcceEeeeecCCCccccccc
Confidence 999999999744 5899999999998 7899999999999999999999999999999999999999998743221
Q ss_pred CCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHH
Q 001413 653 RKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVA 732 (1082)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~ 732 (1082)
.+. . + ..+++ ..++.+++++||+|++|++
T Consensus 382 ~~~----------------~-------------~---------------------~~~~~-~~~~~~~~~~fg~s~~f~~ 410 (756)
T PLN02190 382 GSL----------------S-------------S---------------------VATRE-FLAEDSLAREFGNSKEMVK 410 (756)
T ss_pred ccc----------------c-------------c---------------------ccccc-ccchhhhhhhcCCcHHHHH
Confidence 000 0 0 00000 2334567899999999999
Q ss_pred HHhhhcCCCCC-CcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCC
Q 001413 733 STLMENGGVPQ-SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP 811 (1082)
Q Consensus 733 Sal~e~GG~p~-~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP 811 (1082)
|+..+..+.+. ..+.+++++||++|+||+||++|+||+||||.|+|+|||+.||++||++||||+||+|++++|.|.+|
T Consensus 411 s~~~~~~~~~~~~~~~~~~~~eA~~V~sC~YE~~T~WG~evG~~ygSitED~~TGl~mh~rGWrSvY~~p~~~AFlG~aP 490 (756)
T PLN02190 411 SVVDALQRKPNPQNSLTNSIEAAQEVGHCHYEYQTSWGNTIGWLYDSVAEDLNTSIGIHSRGWTSSYISPDPPAFLGSMP 490 (756)
T ss_pred HHHHHhccCCCCccchHHHHHHHHhhcccCCCCCCchhhccCcccceeechHHHHHHHHccCCceEecCCCchhhcCcCC
Confidence 99876543332 33457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccch
Q 001413 812 INLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISN 891 (1082)
Q Consensus 812 ~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~ 891 (1082)
+++.++++||+|||+|++||+++++||+++++.++|++.|||+|++.++ |++++|+++|+++|++||++|++++|..
T Consensus 491 ~~l~~~L~Q~~RWa~G~lqI~fsr~nPl~~g~~~~L~l~QRLaYl~~~~-~~~sip~l~Y~~lP~l~Ll~g~~i~P~~-- 567 (756)
T PLN02190 491 PGGPEAMVQQRRWATGLIEVLFNKQSPLIGMFCRKIRFRQRLAYLYVFT-CLRSIPELIYCLLPAYCLLHNSALFPKG-- 567 (756)
T ss_pred CChHHHhhhhhhHhhhhHHHHHhcCCCceeccCCCCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccccCc--
Confidence 9999999999999999999999999999976668999999999999988 9999999999999999999999999965
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCC-------
Q 001413 892 LASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASD------- 964 (1082)
Q Consensus 892 ~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~------- 964 (1082)
.++++++++++++++++++|++|+|+++++||||||||+|+++|+|+||++++++|+|+++++.|+||+|..+
T Consensus 568 ~~~~~~~~l~~~~~~~~l~E~~~sG~s~~~WWnnqr~w~I~~~sa~l~a~~~~~lK~lg~s~~~F~vTsK~~~~~~~~~~ 647 (756)
T PLN02190 568 VYLGIIVTLVGMHCLYTLWEFMSLGFSVQSWYVSQSFWRIKATSSWLFSIQDIILKLLGISKTVFIVTKKTMPETKSGSG 647 (756)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHhhhheEEeecchHHHHHHHHHHHHHhccccceEEEeeccccccccccc
Confidence 4567778888999999999999999999999999999999999999999999999999999999999999643
Q ss_pred ------C-CCCc--cceeecccccchHHHHHHHHHHHHHHHHHHHHHHh---cCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 001413 965 ------E-DGDF--TELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAIN---SGYQSWGPLFGKLFFAFWVIVHLYPFLK 1032 (1082)
Q Consensus 965 ------~-d~~~--~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~---~~~~~w~~l~g~l~~~~Wvv~nl~pflk 1032 (1082)
+ +..+ +++|+|+||++++|+++++++|++|++.|+++.+. ++.+.|+. ++++|+++|+++|++||+|
T Consensus 648 ~~~~~~~~~~~~~~~~~f~f~~S~lfiP~tti~~~Nl~a~~~g~~~~~~~~~s~~~~~~~-l~q~~~~~~vv~~~~P~~~ 726 (756)
T PLN02190 648 SGPSQGEDDGPNSDSGKFEFDGSLYFLPGTFIVLVNLAALAGFLVGLQRSSYSHGGGGSG-LAEACGCILVVMLFLPFLK 726 (756)
T ss_pred cccccccccchhhhcceeEecceehHHHHHHHHHHHHHHHHHHHHHHhhhhhccCccccc-HHHHHHHHHHHHHHHHHHH
Confidence 1 1112 67899999999999999999999999988887653 23345554 5999999999999999999
Q ss_pred HHhcCC-CCCchhHHHHHHHHHHHHHhhhe
Q 001413 1033 GLMGRQ-NRTPTIVVVWSILLASIFSLLWV 1061 (1082)
Q Consensus 1033 gL~gR~-~~~P~~v~~~s~lla~~f~~lwv 1061 (1082)
|||+|+ +++|++|++.|++|+.+|+++.|
T Consensus 727 gl~~kdkg~iP~s~~~~s~~l~~~f~~~~~ 756 (756)
T PLN02190 727 GLFEKGKYGIPLSTLSKAAFLAVLFVVFSV 756 (756)
T ss_pred HHhcCCCCCCChhHHHHHHHHHHHHHhccC
Confidence 999775 59999999999999999998865
No 10
>PLN02893 Cellulose synthase-like protein
Probab=100.00 E-value=8.2e-191 Score=1681.90 Aligned_cols=707 Identities=37% Similarity=0.702 Sum_probs=650.9
Q ss_pred ccCCCceeeeecCCCCCchhHHHHHHHHHHHHHHHHHhhcccchhh-HHHHHHHHHHHHHHHHHHHHhhcccccccccch
Q 001413 255 EARQPLSRKVPIPSSRINPYRMVIFLRLIILGIFLYYRIKNPVHNA-IALWLISVICEIWFAISWIFDQFPKWLPVNRET 333 (1082)
Q Consensus 255 ~~~~pl~r~~~~~~~~~~~yR~~i~~~l~~l~~yl~wRi~~~~~~a-~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~ 333 (1082)
....||+++++++++. +||+++++++++++++|+||+++.+.+. .++|+++++||+||+|+|+|+|++||+|++|+|
T Consensus 9 ~~~~pL~~~~~~~~~~--~~R~~~~~~~~~i~~ll~~r~~~~~~~~~~~~w~~~~~~e~wf~f~W~l~q~~k~~Pv~r~~ 86 (734)
T PLN02893 9 TGAPPLHTCHPMRRTI--ANRVFAVVYSCAILALLYHHVIALLHSTTTLITLLLLLADIVLAFMWATTQAFRMCPVHRRV 86 (734)
T ss_pred CCCCCceeeeecCCch--HHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHHHccCcccccccccc
Confidence 3566999999998875 5999999999999999999999876654 789999999999999999999999999999999
Q ss_pred hhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhh
Q 001413 334 YLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFAR 413 (1082)
Q Consensus 334 ~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~ 413 (1082)
|+|||+++++ .++||+|||||||+||.||||++|+|||||+||+|||+|||+|||||||+++||||||.|||+|||
T Consensus 87 ~~~~L~~~~~----~~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt~~al~Eaa~FA~ 162 (734)
T PLN02893 87 FIEHLEHYAK----ESDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLTLFAFMEAAKFAT 162 (734)
T ss_pred CHHHHhhhcc----cccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHHHHHHHHHHHHHH
Confidence 9999997764 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCC-----CC
Q 001413 414 KWVPFCKKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDG-----TP 488 (1082)
Q Consensus 414 ~WvPFCkk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dg-----t~ 488 (1082)
+||||||||+|||||||+||+++. ++|++|||+|||||||||+|||+++++ +++|++ |.|+++ +.
T Consensus 163 ~WvPFCrk~~ie~R~P~~YF~~~~--------~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~-~~~~~~~~~~f~~ 232 (734)
T PLN02893 163 HWLPFCKKNKIVERCPEAYFSSNS--------HSWSPETEQIKMMYESMKVRVENVVER-GKVSTD-YITCDQEREAFSR 232 (734)
T ss_pred hhcccccccCCCcCCHHHHhccCC--------CccchHHHHHHHHHHHHHHHHHHHHhc-CcCchh-hhhhccccccccc
Confidence 999999999999999999999982 467899999999999999999999976 888887 665444 78
Q ss_pred CCCCC-CCCCccceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCC
Q 001413 489 WPGNN-TRDHPGMIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYIN 567 (1082)
Q Consensus 489 w~~~~-~rdhp~iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~ 567 (1082)
|++|. ++|||+||||+++++++.|.+|++||+|||||||||||++||+||||||+++|+||++||||||||||||||+|
T Consensus 233 w~~~~~~~dH~~ivqV~l~~~~~~d~~g~~lP~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n 312 (734)
T PLN02893 233 WTDKFTRQDHPTVIQVLLESGKDKDITGHTMPNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSN 312 (734)
T ss_pred CcCCCCCCCCCceeeeeccCCCccchhhccCCceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCC
Confidence 98775 78999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCC
Q 001413 568 NSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPP 647 (1082)
Q Consensus 568 ~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~ 647 (1082)
||++||+|||||+||+.++++|||||||+|+|++++|+|+|++++||+++|+|+||+|||+||||||+|||+||||..+.
T Consensus 313 ~p~~l~~amcff~Dp~~~~~vafVQfPQ~F~~i~~~D~y~~~~~vff~~~~~glDG~~gp~y~GTGc~~RR~al~G~~~~ 392 (734)
T PLN02893 313 DPQTPLRALCYLLDPSMDPKLGYVQFPQIFHGINKNDIYAGELKRLFQINMIGMDGLAGPNYVGTGCFFRRRVFYGGPSS 392 (734)
T ss_pred chhHHHHHHHHhcCCCcCCceEEEeCcccccCCCcCCCCcchhHHHHHHHhhcccccCCceeeccceEEEHHHhcCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999997331
Q ss_pred CCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccch
Q 001413 648 LKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQS 727 (1082)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s 727 (1082)
... +++++ ++
T Consensus 393 ~~~---------------------------------------------~~~~~-----------------------~~-- 402 (734)
T PLN02893 393 LIL---------------------------------------------PEIPE-----------------------LN-- 402 (734)
T ss_pred ccc---------------------------------------------hhhhh-----------------------cc--
Confidence 000 00000 00
Q ss_pred HHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCccc
Q 001413 728 AVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFK 807 (1082)
Q Consensus 728 ~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~ 807 (1082)
..++...+....++++||+||+||.||++|.||++|||.|+|+|||+.||++||++|||++|++|++++|.
T Consensus 403 ---------~~~~~~~~~~~~~~~~~a~~v~sC~ye~~t~WG~~~G~~ygsvtED~~Tg~~lh~~GWrSvY~~p~~~af~ 473 (734)
T PLN02893 403 ---------PDHLVDKSIKSQEVLALAHHVAGCNYENQTNWGSKMGFRYGSLVEDYYTGYRLQCEGWKSIFCNPKRPAFL 473 (734)
T ss_pred ---------cccccccccchHHHHHHhhhccccccccCCccccccceEeccccccHHHHHHHHhcCCcEEecCCCchhhc
Confidence 01122334456789999999999999999999999999999999999999999999999999998888889
Q ss_pred ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCcccc
Q 001413 808 GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMP 887 (1082)
Q Consensus 808 G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip 887 (1082)
|++|+|+.++++||+|||+|++||+++++||++++. ++|++.||++|++.++||++++++++|+++|++||++|++++|
T Consensus 474 G~aP~~l~~~l~Q~~RWa~G~lqI~~s~~nPl~~g~-~~L~~~Qrl~Y~~~~~~~~~slp~liY~~~P~l~Ll~g~~i~p 552 (734)
T PLN02893 474 GDSPINLHDVLNQQKRWSVGLLEVAFSKYSPITFGV-KSIGLLMGLGYAHYAFWPIWSIPITIYAFLPQLALLNGVSIFP 552 (734)
T ss_pred cCCCCCHHHHHHHHHHHHhhhHHHHhhccCchhhcc-cCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcCCcccc
Confidence 999999999999999999999999999999999754 6899999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHhhhcccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCC
Q 001413 888 QISNLASIVFISLFLSIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDG 967 (1082)
Q Consensus 888 ~~s~~~l~~fi~lflsi~~~~lLe~rwsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~ 967 (1082)
..+..++++++++++++++++++|++|+|.++++||||||||+|.++++++++++++++|.|++++++|+||+|+.+.+.
T Consensus 553 ~~s~~~f~~yi~l~~s~~~~~~lE~~~sG~t~~~WWn~qr~w~I~~~ss~l~a~l~~iLk~lg~s~~~F~VT~K~~~~~~ 632 (734)
T PLN02893 553 KASDPWFFLYIFLFLGAYGQDLLDFLLSGGTIQRWWNDQRMWMIRGLSSFLFGLVEFLLKTLGISTFGFNVTSKVVDEEQ 632 (734)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHhccCccHhhhcchheeeehHHHHHHHHHHHHHHHHHhcccCCceeecCCCccccc
Confidence 98888888888899999999999999999999999999999999999999999999999999999999999999976422
Q ss_pred --Cc-cceeeccc-ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhcCCC--CC
Q 001413 968 --DF-TELYMFKW-TTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLMGRQN--RT 1041 (1082)
Q Consensus 968 --~~-~~ly~f~w-s~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~gR~~--~~ 1041 (1082)
.+ .++|+|+| +++++|+++++++|++|+++|+++++.+ ..|+.+++++++++|+++|++||++||++|++ |+
T Consensus 633 ~~~y~~~~f~f~~~spl~ip~ttl~llNl~a~v~Gi~~~~~~--~~~~~~~~~~~~~~~~v~~~~P~~~gl~~r~dkg~~ 710 (734)
T PLN02893 633 SKRYEQGIFEFGVSSPMFLPLTTAAIINLVSFLWGIAQIFRQ--RNLEGLFLQMFLAGFAVVNCWPIYEAMVLRTDDGKL 710 (734)
T ss_pred ccccccceeeecccchhHHHHHHHHHHHHHHHHHHHHHHHhC--CchhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCC
Confidence 23 47899995 8899999999999999999999999875 35788899999999999999999999999986 99
Q ss_pred chhHHHHHHHHHHHHHhh
Q 001413 1042 PTIVVVWSILLASIFSLL 1059 (1082)
Q Consensus 1042 P~~v~~~s~lla~~f~~l 1059 (1082)
|++|++||++||.++.++
T Consensus 711 P~~v~~~s~~l~~~~~~~ 728 (734)
T PLN02893 711 PVKITLISIVLAWALYLA 728 (734)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 999999999999887764
No 11
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=100.00 E-value=1.8e-67 Score=642.32 Aligned_cols=491 Identities=25% Similarity=0.391 Sum_probs=387.1
Q ss_pred HH-HHHHHHHHHHHHHHHhhcccchhh----HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhccCCCCC
Q 001413 275 RM-VIFLRLIILGIFLYYRIKNPVHNA----IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPS 349 (1082)
Q Consensus 275 R~-~i~~~l~~l~~yl~wRi~~~~~~a----~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~ 349 (1082)
|+ ++++.+++.++|++||++.+++.. ..+.++++++|+++.++.++..+..+.|.+|.+. ..+.+++
T Consensus 57 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~l~~~e~~~~~~~~~~~~~~~~~~~r~~~--------~~~~~~~ 128 (713)
T TIGR03030 57 RLLLLVLSVFISLRYLWWRLTETLPFDNTLNFIFGTLLLLAELYSITILLLGYFQTVRPLDRTPV--------PLPLDPE 128 (713)
T ss_pred HHHHHHHHHHHHHHHHHhheeeecCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcc--------CCCCCcc
Confidence 44 566777778999999999876532 3457788999999999999988888888887642 1233467
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001413 350 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 429 (1082)
Q Consensus 350 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 429 (1082)
.+|+|||+||||| |++.++.+|+.+++++|||.||+.|||+|||+++-|.....++
T Consensus 129 ~~P~VsViIP~yN---E~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~--------------------- 184 (713)
T TIGR03030 129 EWPTVDVFIPTYN---EDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE--------------------- 184 (713)
T ss_pred cCCeeEEEEcCCC---CCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---------------------
Confidence 8999999999999 9999999999999999999999999999999877433211110
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCC
Q 001413 430 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 509 (1082)
Q Consensus 430 e~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g 509 (1082)
+.+. ++..+++ .+++++
T Consensus 185 -------------------~~~~---~~~~~~~----~~l~~~------------------------------------- 201 (713)
T TIGR03030 185 -------------------QAEA---AQRREEL----KEFCRK------------------------------------- 201 (713)
T ss_pred -------------------hhhh---hhhHHHH----HHHHHH-------------------------------------
Confidence 0100 0011222 223311
Q ss_pred CCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccE
Q 001413 510 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHV 588 (1082)
Q Consensus 510 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v 588 (1082)
.++.|+.|++ |+|+||||||++++. ++||||+++||||+ ++|++|++++++| .|| ++
T Consensus 202 ---------~~v~yi~r~~----n~~~KAgnLN~al~~----a~gd~Il~lDAD~v-~~pd~L~~~v~~f~~dp----~v 259 (713)
T TIGR03030 202 ---------LGVNYITRPR----NVHAKAGNINNALKH----TDGELILIFDADHV-PTRDFLQRTVGWFVEDP----KL 259 (713)
T ss_pred ---------cCcEEEECCC----CCCCChHHHHHHHHh----cCCCEEEEECCCCC-cChhHHHHHHHHHHhCC----CE
Confidence 0388999988 788999999999997 79999999999998 7999999999988 588 89
Q ss_pred EEEecCccccCCCcc-------cccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccc
Q 001413 589 CYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSL 661 (1082)
Q Consensus 589 ~~VQ~PQ~F~nid~~-------Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~ 661 (1082)
++||+||.|+|.|+. +++.+++.+||+.+++|+|.+++++++||++++||+||
T Consensus 260 ~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~f~~~i~~g~~~~~~~~~~Gs~~~iRR~al-------------------- 319 (713)
T TIGR03030 260 FLVQTPHFFVSPDPIERNLGTFRRMPNENELFYGLIQDGNDFWNAAFFCGSAAVLRREAL-------------------- 319 (713)
T ss_pred EEEeCCeeccCCCHHhhhhHHHHHhhhHHHHHHHHHHHHHhhhCCeeecCceeEEEHHHH--------------------
Confidence 999999999998754 34567788999999999999999999999999999888
Q ss_pred cCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCC
Q 001413 662 FGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGV 741 (1082)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~ 741 (1082)
+++||+
T Consensus 320 --------------------------------------------------------------------------~~iGGf 325 (713)
T TIGR03030 320 --------------------------------------------------------------------------DEIGGI 325 (713)
T ss_pred --------------------------------------------------------------------------HHcCCC
Confidence 356775
Q ss_pred CCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHH
Q 001413 742 PQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQV 821 (1082)
Q Consensus 742 p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR 821 (1082)
++ ++++||++++++|+++||+++|+++.. ++|++|+|++++++||
T Consensus 326 ~~---------------------------------~~vtED~~l~~rL~~~G~~~~y~~~~~--~~g~~p~sl~~~~~Qr 370 (713)
T TIGR03030 326 AG---------------------------------ETVTEDAETALKLHRRGWNSAYLDRPL--IAGLAPETLSGHIGQR 370 (713)
T ss_pred CC---------------------------------CCcCcHHHHHHHHHHcCCeEEEecccc--ccccCCCCHHHHHHHH
Confidence 54 689999999999999999999997543 3899999999999999
Q ss_pred HHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHH
Q 001413 822 LRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLF 901 (1082)
Q Consensus 822 ~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~~~l~~fi~lf 901 (1082)
.||++|++|+++. .+|++ .+++++.||++|++.++||+.++++++|+++|++++++|..+++.....++ +.+
T Consensus 371 ~RWa~G~~qi~~~-~~pl~---~~gl~~~qrl~y~~~~~~~~~~~~~~~~~~~P~~~l~~~~~~~~~~~~~~~----~~~ 442 (713)
T TIGR03030 371 IRWAQGMMQIFRL-DNPLL---KRGLSFPQRLCYLNAMLFWFFPLPRVIFLTAPLAYLFFGLNIFVASALEIL----AYA 442 (713)
T ss_pred HHHhcChHHHHhh-hCccc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeCCHHHHH----HHH
Confidence 9999999999975 48997 689999999999999999999999999999999999999999886422222 223
Q ss_pred HHHHHHHHHhhh-cccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceeecccccc
Q 001413 902 LSIFATGILEMR-WSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTL 980 (1082)
Q Consensus 902 lsi~~~~lLe~r-wsg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~L 980 (1082)
++.++.+++.+. ..|.....||++ ++.+....+.+...+.+.+++++.+|+||||++..+..+ .+++
T Consensus 443 lp~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~F~VT~Kg~~~~~~~-------~~~~ 510 (713)
T TIGR03030 443 LPHMLHSLLTNSYLFGRVRWPFWSE-----VYETVLAVYLLPPVLVTLLNPKKPKFNVTPKGELLDEDY-------FSPL 510 (713)
T ss_pred HHHHHHHHHHHHHHcCCeecchHHH-----HHHHHHHHHHHHHHHHHHhCcCCCCceecCCCccccccc-------cchH
Confidence 454455554433 344444567753 233323334445556667889999999999998654332 2358
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 001413 981 LIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM 1035 (1082)
Q Consensus 981 liP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL~ 1035 (1082)
++|+++++++|++|+++|+++.+.++. ...+.+++.+|.++|++-+.-++.
T Consensus 511 ~~p~~~l~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~n~~~~~~~~~ 561 (713)
T TIGR03030 511 SRPYLILFALILAGLAFGLYRIYGYPI----ERGVLLVVLGWNLLNLILLGAALA 561 (713)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcc----ccchhhHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999864332 234568999999999998887773
No 12
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=100.00 E-value=2.8e-67 Score=641.83 Aligned_cols=473 Identities=26% Similarity=0.437 Sum_probs=377.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccchh----hHHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhccCCCCCCC
Q 001413 276 MVIFLRLIILGIFLYYRIKNPVHN----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEPSQL 351 (1082)
Q Consensus 276 ~~i~~~l~~l~~yl~wRi~~~~~~----a~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~~~~~~~~l 351 (1082)
+++++.+++.++|++||++.+++. +..+.++++++|+++.++.++..+..+.|..|.+. +.|...+.+
T Consensus 188 ~l~~l~~~~~~rY~~WR~~~tL~~~~~~~~~~~~~ll~ae~~~~~~~~lg~~~~~~~~~r~~~--------~~~~~~~~~ 259 (852)
T PRK11498 188 MLIVLSLTVSCRYIWWRYTSTLNWDDPVSLVCGLILLFAETYAWIVLVLGYFQVVWPLNRQPV--------PLPKDMSLW 259 (852)
T ss_pred HHHHHHHHHHHHHHHHHHheeeCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCC--------CCCcccCCC
Confidence 357778888999999999987653 34566788999999999999988888888877642 123345678
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|+|||+||||| ||+.++++||.+++++|||.+|+.|||+|||.++- +.
T Consensus 260 P~VsViIPtYN---E~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~-------t~---------------------- 307 (852)
T PRK11498 260 PTVDIFVPTYN---EDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREE-------FR---------------------- 307 (852)
T ss_pred CcEEEEEecCC---CcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChH-------HH----------------------
Confidence 99999999999 99999999999999999999999999999998751 11
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
++ +++
T Consensus 308 -----------------------------~l-------a~~--------------------------------------- 312 (852)
T PRK11498 308 -----------------------------QF-------AQE--------------------------------------- 312 (852)
T ss_pred -----------------------------HH-------HHH---------------------------------------
Confidence 11 100
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 590 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~ 590 (1082)
.++.|+.|++ |.|+||||+|++++. ++||||+++||||+ +++++|+++|++| .|| ++|+
T Consensus 313 -------~~v~yI~R~~----n~~gKAGnLN~aL~~----a~GEyIavlDAD~i-p~pdfL~~~V~~f~~dP----~Vgl 372 (852)
T PRK11498 313 -------VGVKYIARPT----HEHAKAGNINNALKY----AKGEFVAIFDCDHV-PTRSFLQMTMGWFLKDK----KLAM 372 (852)
T ss_pred -------CCcEEEEeCC----CCcchHHHHHHHHHh----CCCCEEEEECCCCC-CChHHHHHHHHHHHhCC----CeEE
Confidence 0278999876 678999999999997 79999999999997 8999999999865 798 8999
Q ss_pred EecCccccCCCccc-------ccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccC
Q 001413 591 VQFPQRFDGIDRND-------RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFG 663 (1082)
Q Consensus 591 VQ~PQ~F~nid~~D-------ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~ 663 (1082)
||+||.|+|.|+.+ .+.++++.||+..++|+|.++++++|||++++||+||
T Consensus 373 VQtp~~f~n~dp~~rnl~~~~~~~~e~~~fy~~iq~g~~~~~a~~~~Gs~aviRReaL---------------------- 430 (852)
T PRK11498 373 MQTPHHFFSPDPFERNLGRFRKTPNEGTLFYGLVQDGNDMWDATFFCGSCAVIRRKPL---------------------- 430 (852)
T ss_pred EEcceeccCCchHHHhhHHHhhcccchhHHHHHHHhHHHhhcccccccceeeeEHHHH----------------------
Confidence 99999999988643 2567788999999999999999999999999999887
Q ss_pred CCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCC
Q 001413 664 GSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQ 743 (1082)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~ 743 (1082)
+++||+++
T Consensus 431 ------------------------------------------------------------------------eeVGGfd~ 438 (852)
T PRK11498 431 ------------------------------------------------------------------------DEIGGIAV 438 (852)
T ss_pred ------------------------------------------------------------------------HHhcCCCC
Confidence 46788665
Q ss_pred CcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHH
Q 001413 744 SATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLR 823 (1082)
Q Consensus 744 ~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~R 823 (1082)
+++|||++++++|+++||+++|+++..+ .|++|+|++++++||.|
T Consensus 439 ---------------------------------~titED~dlslRL~~~Gyrv~yl~~~~a--~glaPesl~~~~~QR~R 483 (852)
T PRK11498 439 ---------------------------------ETVTEDAHTSLRLHRRGYTSAYMRIPQA--AGLATESLSAHIGQRIR 483 (852)
T ss_pred ---------------------------------CccCccHHHHHHHHHcCCEEEEEeccce--eEECCCCHHHHHHHHHH
Confidence 6899999999999999999999965543 89999999999999999
Q ss_pred hhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccccccchHHHHHHHHHHHH
Q 001413 824 WALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISLFLS 903 (1082)
Q Consensus 824 WA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~iip~~s~~~l~~fi~lfls 903 (1082)
|++|++|+++ +++|++ ++++++.||++|+++++|++.+++.++|+++|++||++|+.++.+....+++ .+++
T Consensus 484 WarG~lQi~r-~~~pl~---~~gL~~~qRl~y~~~~l~~l~g~~~l~~l~~Pl~~l~~gi~~i~a~~~~i~~----y~lP 555 (852)
T PRK11498 484 WARGMVQIFR-LDNPLT---GKGLKLAQRLCYANAMLHFLSGIPRLIFLTAPLAFLLLHAYIIYAPALMIAL----FVLP 555 (852)
T ss_pred HHHHHHHHHH-HhChhc---cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChheeCChHHHHH----HHHH
Confidence 9999999997 468987 6899999999999999999999999999999999999999888643221111 2244
Q ss_pred HHHHHHHhhhc-ccccccccccccchhhhhhhHHHHHHHHHHHHHHHcCCCCCeeecCCCCCCCCCccceeecccccchH
Q 001413 904 IFATGILEMRW-SGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLI 982 (1082)
Q Consensus 904 i~~~~lLe~rw-sg~si~~wWrneq~W~I~~vsa~Lfav~~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~Lli 982 (1082)
.++...+...| +|.....||+ | ++..++++.++ ...+...+++++.+|+||+|++..+.. .|+|. ++.
T Consensus 556 ~~~~~~l~~~~~~g~~r~~~ws-e---iye~v~a~~l~-~~~~~~ll~p~~~~F~VTpKg~~~~~~-----~~~~~-~~~ 624 (852)
T PRK11498 556 HMIHASLTNSRIQGKYRHSFWS-E---IYETVLAWYIA-PPTTVALFNPHKGKFNVTAKGGLVEEE-----YVDWV-ISR 624 (852)
T ss_pred HHHHHHHHHHHhcCcchHhHHH-H---HHHHHHHHHHH-HHHHHHHcCccCCCcccCCCCcccccc-----ceehH-HHH
Confidence 44433333332 3332333443 2 13334444443 334445778899999999999765433 24565 578
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 001413 983 PPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGL 1034 (1082)
Q Consensus 983 P~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~Wvv~nl~pflkgL 1034 (1082)
|+++|+++|++|+++|+++.+.+.. ....+.+++++|+++|++.+..++
T Consensus 625 P~~~L~~L~l~gl~~g~~r~~~~~~---~~~~~~~~~~~W~~~nl~~l~~a~ 673 (852)
T PRK11498 625 PYIFLVLLNLVGVAVGIWRYFYGPP---NEILTVIVSLVWVFYNLIILGGAV 673 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCc---ccchhhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999875331 223456799999999998887766
No 13
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=100.00 E-value=5.6e-45 Score=321.32 Aligned_cols=80 Identities=71% Similarity=1.393 Sum_probs=42.1
Q ss_pred cccccccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCcccCCCCCCCCC
Q 001413 12 VKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGDA 91 (1082)
Q Consensus 12 ~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~~~ 91 (1082)
|||++++++|+||||||+||+++|||+|||||||+|||||||||||||||+|+|||||||||||||||||+|| |||||+
T Consensus 1 pkp~k~~~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~kgsp~V~gD-eeedd~ 79 (80)
T PF14569_consen 1 PKPLKNLNGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRHKGSPRVEGD-EEEDDV 79 (80)
T ss_dssp SS--S--SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----TT----TTS------S
T ss_pred CcChhhcCCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccccCCCCCCCC-ccccCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999999 566665
Q ss_pred C
Q 001413 92 D 92 (1082)
Q Consensus 92 d 92 (1082)
|
T Consensus 80 d 80 (80)
T PF14569_consen 80 D 80 (80)
T ss_dssp -
T ss_pred C
Confidence 4
No 14
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=100.00 E-value=1.4e-35 Score=359.11 Aligned_cols=361 Identities=17% Similarity=0.210 Sum_probs=244.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhhcccchhh---------HHHHHHHHHHHHHHHHHHHHhhcccccccccchhhhHhhhhhc
Q 001413 273 PYRMVIFLRLIILGIFLYYRIKNPVHNA---------IALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYE 343 (1082)
Q Consensus 273 ~yR~~i~~~l~~l~~yl~wRi~~~~~~a---------~~lwl~~~~~Ei~f~~~wiL~q~~kw~Pv~R~~~~drL~~r~~ 343 (1082)
..|+++++..++...|..|+....+... ..+..+++..+.+.+.+-++..+.... .|... .+...-.
T Consensus 40 ~rr~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~l~lf~~~~~w~~~~~~~a~~g~~~~~~--~~~~~--~~~~~~~ 115 (691)
T PRK05454 40 LRRLILLGLTLAQTAVATWEMKAVLPYGGWTLLEPALLVLFALLFAWISLGFWTALMGFLQLLR--GRDKY--SISASAA 115 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCCcc--cCCcccc
Confidence 4677888888888999999987643211 122233344444444444444332211 11111 0100000
Q ss_pred cCCCCCCCcceeEEEecCCCCCCCHHHH----HHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhh
Q 001413 344 REGEPSQLAAVDIFVSTVDPLKEPPLVT----ANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFC 419 (1082)
Q Consensus 344 ~~~~~~~lp~VDvfV~T~dp~kEpp~v~----~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFC 419 (1082)
.+......|.|+|+||+|| |++..+ ..|+.|+.+.||| +++.+||+|||.++-+-.
T Consensus 116 ~~~~~~~~~~VaVliP~yN---Ed~~~v~~~L~a~~~Sl~~~~~~-~~~e~~vLdD~~d~~~~~---------------- 175 (691)
T PRK05454 116 GDPPPPPEARTAILMPIYN---EDPARVFAGLRAMYESLAATGHG-AHFDFFILSDTRDPDIAA---------------- 175 (691)
T ss_pred cCCCCCCCCceEEEEeCCC---CChHHHHHHHHHHHHHHHhcCCC-CCEEEEEEECCCChhHHH----------------
Confidence 1123456799999999999 998754 5556677779998 589999999998862111
Q ss_pred hhcCCCCCCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCcc
Q 001413 420 KKYNIEPRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPG 499 (1082)
Q Consensus 420 kk~~iepRaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~ 499 (1082)
.|+ +.+++++. +.
T Consensus 176 ------------------------------~e~----~~~~~L~~-------~~-------------------------- 188 (691)
T PRK05454 176 ------------------------------AEE----AAWLELRA-------EL-------------------------- 188 (691)
T ss_pred ------------------------------HHH----HHHHHHHH-------hc--------------------------
Confidence 111 12333321 10
Q ss_pred ceeeecccCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh
Q 001413 500 MIQVFLGENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM 579 (1082)
Q Consensus 500 iiqv~l~~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff 579 (1082)
+ .-+++.|..|++ |.|+||||+|.+++.++ .+++||+++|||++ +.+++|++++.+|
T Consensus 189 ---------~-------~~~~i~yr~R~~----n~~~KaGNl~~~~~~~~--~~~eyivvLDADs~-m~~d~L~~lv~~m 245 (691)
T PRK05454 189 ---------G-------GEGRIFYRRRRR----NVGRKAGNIADFCRRWG--GAYDYMVVLDADSL-MSGDTLVRLVRLM 245 (691)
T ss_pred ---------C-------CCCcEEEEECCc----CCCccHHHHHHHHHhcC--CCcCEEEEEcCCCC-CCHHHHHHHHHHH
Confidence 0 002689988887 77889999999999765 57899999999998 7999999999988
Q ss_pred c-CCCCCccEEEEecCccccCCCcc-ccccc-chhhhhhhhccccccCC--CccccccccchhhhhccCCCCCCCCCCCC
Q 001413 580 M-DPNLGKHVCYVQFPQRFDGIDRN-DRYAN-RNTVFFDINLRGLDGIQ--GPVYVGTGCVFNRTALYGYEPPLKPKHRK 654 (1082)
Q Consensus 580 ~-DP~~g~~v~~VQ~PQ~F~nid~~-Dry~n-~~~vFfdi~~~glDg~q--gp~yvGTgcvfRR~ALyG~~p~~~~~~~~ 654 (1082)
. || ++|.||+|+.+.|.+.- .|..+ ...++.++...|++.+| ...|+|+|+++||+|+..
T Consensus 246 ~~dP----~vGlVQt~~~~~n~~slfaR~qqf~~~~y~~~~~~G~~~w~~~~g~f~G~naIiR~~af~~----------- 310 (691)
T PRK05454 246 EANP----RAGLIQTLPVAVGADTLFARLQQFATRVYGPLFAAGLAWWQGGEGNYWGHNAIIRVKAFAE----------- 310 (691)
T ss_pred hhCc----CEEEEeCCccCcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccCccccccceEEEEHHHHHH-----------
Confidence 5 99 89999999999987631 12111 13455556677888776 356899999999998842
Q ss_pred CCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHH
Q 001413 655 PGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVAST 734 (1082)
Q Consensus 655 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sa 734 (1082)
T Consensus 311 -------------------------------------------------------------------------------- 310 (691)
T PRK05454 311 -------------------------------------------------------------------------------- 310 (691)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCH
Q 001413 735 LMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINL 814 (1082)
Q Consensus 735 l~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl 814 (1082)
.||.|.- . ..-||..++++||++++.+|+++||+++|+++ ...+++++|+|+
T Consensus 311 ---~~glp~L------------------~------g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd-~~~~~ee~P~tl 362 (691)
T PRK05454 311 ---HCGLPPL------------------P------GRGPFGGHILSHDFVEAALMRRAGWGVWLAPD-LPGSYEELPPNL 362 (691)
T ss_pred ---hcCCccc------------------c------ccCCCCCCcccHHHHHHHHHHHCCCEEEEcCc-cccccccCCCCH
Confidence 1221110 0 00134457899999999999999999999954 333489999999
Q ss_pred HHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHH-HHHHHH
Q 001413 815 SDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMY-CTLPAV 877 (1082)
Q Consensus 815 ~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~Liy-lllP~l 877 (1082)
.++++||.||++|++|++.. ++ .+++++.+|+.|++.++.++.+...+++ ++.|++
T Consensus 363 ~~~~~qr~RW~~G~lQ~l~~----l~---~~gl~~~~R~~~l~g~~~yl~~P~wll~l~l~~~~ 419 (691)
T PRK05454 363 LDELKRDRRWCQGNLQHLRL----LL---AKGLHPVSRLHFLTGIMSYLSAPLWLLFLLLGTAL 419 (691)
T ss_pred HHHHHHHHHHHhchHHHHHH----HH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999852 33 5789999999998877666655443333 334443
No 15
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=100.00 E-value=6.1e-34 Score=309.47 Aligned_cols=182 Identities=21% Similarity=0.297 Sum_probs=145.6
Q ss_pred CcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCccEEEEecCccc
Q 001413 519 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRF 597 (1082)
Q Consensus 519 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~-DP~~g~~v~~VQ~PQ~F 597 (1082)
++++|++|++ ++|+||||||+++...+ +++|||+++|||+. +.|++|++++.+|. || ++|.||+||+|
T Consensus 67 ~~v~~~~r~~----~~g~Kag~l~~~~~~~~--~~~~~i~~~DaD~~-~~p~~l~~~v~~~~~~~----~vg~vq~~~~~ 135 (254)
T cd04191 67 GRIYYRRRRE----NTGRKAGNIADFCRRWG--SRYDYMVVLDADSL-MSGDTIVRLVRRMEANP----RAGIIQTAPKL 135 (254)
T ss_pred CcEEEEEcCC----CCCccHHHHHHHHHHhC--CCCCEEEEEeCCCC-CCHHHHHHHHHHHHhCC----CEEEEeCCcee
Confidence 4699999999 55679999999998532 58899999999997 79999999999885 99 89999999999
Q ss_pred cCCCcc-ccc-ccchhhhhhhhccccccCCC--ccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 001413 598 DGIDRN-DRY-ANRNTVFFDINLRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 673 (1082)
Q Consensus 598 ~nid~~-Dry-~n~~~vFfdi~~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1082)
.|.+.. .+. +-.+..|..+.+.|++.+++ .+|+||+.++||+||... |
T Consensus 136 ~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~-------------~--------------- 187 (254)
T cd04191 136 IGAETLFARLQQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEH-------------C--------------- 187 (254)
T ss_pred ECCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHh-------------c---------------
Confidence 987642 111 11356677788888887755 689999999999998411 0
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001413 674 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 753 (1082)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 753 (1082)
.+.++||+.
T Consensus 188 ------------------------------------------------------------~~~~i~g~g----------- 196 (254)
T cd04191 188 ------------------------------------------------------------ALPVLPGRP----------- 196 (254)
T ss_pred ------------------------------------------------------------CCccccCCC-----------
Confidence 001234321
Q ss_pred HHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchh
Q 001413 754 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 830 (1082)
Q Consensus 754 ai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQ 830 (1082)
||..++++||+++|++++.+||+++|.+... +.++++|+|++++++||.||++|++|
T Consensus 197 -------------------~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~-~~~~~~p~~~~~~~~qr~RW~~G~~q 253 (254)
T cd04191 197 -------------------PFGGHILSHDFVEAALMRRAGWEVRLAPDLE-GSYEECPPTLIDFLKRDRRWCQGNLQ 253 (254)
T ss_pred -------------------CCCCCeecHHHHHHHHHHHcCCEEEEccCCc-ceEeECCCCHHHHHHHHHHHHhhcCc
Confidence 4666899999999999999999999995433 23789999999999999999999987
No 16
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=1.5e-30 Score=297.69 Aligned_cols=233 Identities=30% Similarity=0.438 Sum_probs=170.7
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCch
Q 001413 351 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 430 (1082)
Q Consensus 351 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe 430 (1082)
+|.|||+||+|| |++.++.+|+.|++++|||. +.++|.|||+++-|++-+. +++.
T Consensus 53 ~p~vsviiP~yn---E~~~~~~~~l~s~~~~dyp~--~evivv~d~~~d~~~~~~~--------------~~~~------ 107 (439)
T COG1215 53 LPKVSVIIPAYN---EEPEVLEETLESLLSQDYPR--YEVIVVDDGSTDETYEILE--------------ELGA------ 107 (439)
T ss_pred CCceEEEEecCC---CchhhHHHHHHHHHhCCCCC--ceEEEECCCCChhHHHHHH--------------HHHh------
Confidence 699999999998 99999999999999999995 8899999999874444221 1110
Q ss_pred hhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCC
Q 001413 431 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 510 (1082)
Q Consensus 431 ~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~ 510 (1082)
+. +..+
T Consensus 108 ------------------------------~~-----------------------------------~~~~--------- 113 (439)
T COG1215 108 ------------------------------EY-----------------------------------GPNF--------- 113 (439)
T ss_pred ------------------------------hc-----------------------------------Ccce---------
Confidence 00 0000
Q ss_pred CCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEE
Q 001413 511 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 590 (1082)
Q Consensus 511 ~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~ 590 (1082)
+++|. ++ .++.|+||+|.++.. +.+|+|+++|||++ +.+++|++++..|.|+. .++.
T Consensus 114 ---------~~~~~--~~----~~~gK~~al~~~l~~----~~~d~V~~~DaD~~-~~~d~l~~~~~~f~~~~---~~~v 170 (439)
T COG1215 114 ---------RVIYP--EK----KNGGKAGALNNGLKR----AKGDVVVILDADTV-PEPDALRELVSPFEDPP---VGAV 170 (439)
T ss_pred ---------EEEec--cc----cCccchHHHHHHHhh----cCCCEEEEEcCCCC-CChhHHHHHHhhhcCCC---eeEE
Confidence 11211 22 678899999999986 56999999999997 89999999999999884 3479
Q ss_pred EecCccccCCCcccccccchhhhhh-----hhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCC
Q 001413 591 VQFPQRFDGIDRNDRYANRNTVFFD-----INLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 665 (1082)
Q Consensus 591 VQ~PQ~F~nid~~Dry~n~~~vFfd-----i~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 665 (1082)
+|.||.+.+.++......-..+.|. ....+.++....++.
T Consensus 171 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~----------------------------------- 215 (439)
T COG1215 171 VGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAASKGGLISFLS----------------------------------- 215 (439)
T ss_pred eCCceeeecCChhhhcchhcchhhhhhHHHhhhhhhhcCCeEEEc-----------------------------------
Confidence 9999999887641111111111111 111112222333344
Q ss_pred ccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCc
Q 001413 666 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 745 (1082)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~ 745 (1082)
|.+..||++++++.||
T Consensus 216 -----------------------------------------------------------G~~~~~rr~aL~~~g~----- 231 (439)
T COG1215 216 -----------------------------------------------------------GSSSAFRRSALEEVGG----- 231 (439)
T ss_pred -----------------------------------------------------------ceeeeEEHHHHHHhCC-----
Confidence 4444555555567775
Q ss_pred chhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhh
Q 001413 746 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 825 (1082)
Q Consensus 746 ~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA 825 (1082)
|...++|||.+++++|+.+|||++|++++ .+++++|+|+.++++||.||+
T Consensus 232 ----------------------------~~~~~i~ED~~lt~~l~~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 232 ----------------------------WLEDTITEDADLTLRLHLRGYRVVYVPEA--IVWTEAPETLKELWRQRLRWA 281 (439)
T ss_pred ----------------------------CCCCceeccHHHHHHHHHCCCeEEEeecc--eEeeeCcccHHHHHHHHHHHH
Confidence 44579999999999999999999999654 349999999999999999999
Q ss_pred ccchhHhhh
Q 001413 826 LGSVEILFS 834 (1082)
Q Consensus 826 ~G~lQIlls 834 (1082)
+|++|++..
T Consensus 282 ~g~~~~~~~ 290 (439)
T COG1215 282 RGGLQVLLL 290 (439)
T ss_pred cccceeeeh
Confidence 999999975
No 17
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.97 E-value=6.2e-28 Score=280.83 Aligned_cols=232 Identities=21% Similarity=0.232 Sum_probs=165.7
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001413 349 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 428 (1082)
Q Consensus 349 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 428 (1082)
...|.|+|+||+|| |+. .+.+|+.|+++.||| ++.++|.|||.++-|.+.+.|
T Consensus 72 ~~~p~vsViIP~yN---E~~-~i~~~l~sll~q~yp--~~eIivVdDgs~D~t~~~~~~--------------------- 124 (444)
T PRK14583 72 KGHPLVSILVPCFN---EGL-NARETIHAALAQTYT--NIEVIAINDGSSDDTAQVLDA--------------------- 124 (444)
T ss_pred CCCCcEEEEEEeCC---CHH-HHHHHHHHHHcCCCC--CeEEEEEECCCCccHHHHHHH---------------------
Confidence 35799999999998 875 568999999999999 589999999988643322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001413 429 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 508 (1082)
Q Consensus 429 Pe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~ 508 (1082)
++++
T Consensus 125 ----------------------------------------~~~~------------------------------------ 128 (444)
T PRK14583 125 ----------------------------------------LLAE------------------------------------ 128 (444)
T ss_pred ----------------------------------------HHHh------------------------------------
Confidence 1100
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCcc
Q 001413 509 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 587 (1082)
Q Consensus 509 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~ 587 (1082)
.|++.++.++++. .||+|+|++++. +++|||+++|+|++ ++|++|++.+-.| .|| +
T Consensus 129 ---------~~~v~vv~~~~n~-----Gka~AlN~gl~~----a~~d~iv~lDAD~~-~~~d~L~~lv~~~~~~~----~ 185 (444)
T PRK14583 129 ---------DPRLRVIHLAHNQ-----GKAIALRMGAAA----ARSEYLVCIDGDAL-LDKNAVPYLVAPLIANP----R 185 (444)
T ss_pred ---------CCCEEEEEeCCCC-----CHHHHHHHHHHh----CCCCEEEEECCCCC-cCHHHHHHHHHHHHhCC----C
Confidence 0235555554432 499999999986 68999999999997 7999999999755 577 8
Q ss_pred EEEEecCccccCCCcc-ccc-ccchhhhhhhhccccccCCCccc-cccccchhhhhccCCCCCCCCCCCCCCCcccccCC
Q 001413 588 VCYVQFPQRFDGIDRN-DRY-ANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGG 664 (1082)
Q Consensus 588 v~~VQ~PQ~F~nid~~-Dry-~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~ 664 (1082)
++.||..++..|.+.. .+. ..+...++....++.+-.+..+. .|++
T Consensus 186 ~g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~------------------------------- 234 (444)
T PRK14583 186 TGAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVV------------------------------- 234 (444)
T ss_pred eEEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCce-------------------------------
Confidence 9999998776543211 110 01112223333333222222221 1333
Q ss_pred CccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCC
Q 001413 665 SRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQS 744 (1082)
Q Consensus 665 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~ 744 (1082)
..||+++++++||+
T Consensus 235 ---------------------------------------------------------------~~~rr~al~~vGg~--- 248 (444)
T PRK14583 235 ---------------------------------------------------------------AAFRRRALADVGYW--- 248 (444)
T ss_pred ---------------------------------------------------------------eEEEHHHHHHcCCC---
Confidence 34555555677864
Q ss_pred cchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHh
Q 001413 745 ATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRW 824 (1082)
Q Consensus 745 ~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RW 824 (1082)
..+.++||++++++|+.+||++.|++.. .+++++|+|++++++||.||
T Consensus 249 ------------------------------~~~~i~ED~dl~~rl~~~G~~i~~~p~a--~~~~~~p~t~~~~~~Qr~RW 296 (444)
T PRK14583 249 ------------------------------SPDMITEDIDISWKLQLKHWSVFFEPRG--LCWILMPETLRGLWKQRLRW 296 (444)
T ss_pred ------------------------------CCCcccccHHHHHHHHHcCCeEEEeecc--EEeeeCCCCHHHHHHHHHHH
Confidence 4478999999999999999999999643 44899999999999999999
Q ss_pred hccchhHhhhc
Q 001413 825 ALGSVEILFSR 835 (1082)
Q Consensus 825 A~G~lQIllsk 835 (1082)
++|.+|+++++
T Consensus 297 ~~G~~~~~~~~ 307 (444)
T PRK14583 297 AQGGAEVFLKN 307 (444)
T ss_pred hCcHHHHHHHH
Confidence 99999999864
No 18
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.96 E-value=1.9e-27 Score=276.53 Aligned_cols=288 Identities=15% Similarity=0.198 Sum_probs=191.8
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 427 (1082)
++.+|.|+|+||+|| |+ ..+.+||.|+++++||.+++.|+|.|||.++-|.+.+.|+
T Consensus 45 ~~~~P~vsVIIP~yN---e~-~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~------------------- 101 (439)
T TIGR03111 45 IGKLPDITIIIPVYN---SE-DTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRA------------------- 101 (439)
T ss_pred cCCCCCEEEEEEeCC---Ch-HHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHH-------------------
Confidence 467899999999998 76 7899999999999999999999999999987544422211
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~ 507 (1082)
+ ++ +
T Consensus 102 -----------------------------------~-------~~------------------------~---------- 105 (439)
T TIGR03111 102 -----------------------------------Q-------NE------------------------F---------- 105 (439)
T ss_pred -----------------------------------H-------Hh------------------------C----------
Confidence 0 00 0
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCc
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 586 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~-DP~~g~ 586 (1082)
|++ ++.+.+ +.+.||+|+|++++. ++++||+++|+|++ ++|++|++++..|. ||
T Consensus 106 -----------~~v-~v~~~~----~~~Gka~AlN~gl~~----s~g~~v~~~DaD~~-~~~d~L~~l~~~f~~~~---- 160 (439)
T TIGR03111 106 -----------PGL-SLRYMN----SDQGKAKALNAAIYN----SIGKYIIHIDSDGK-LHKDAIKNMVTRFENNP---- 160 (439)
T ss_pred -----------CCe-EEEEeC----CCCCHHHHHHHHHHH----ccCCEEEEECCCCC-cChHHHHHHHHHHHhCC----
Confidence 111 121111 125699999999986 68999999999998 79999999998775 77
Q ss_pred cEEEEecCccccCCCcccc-------cccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcc
Q 001413 587 HVCYVQFPQRFDGIDRNDR-------YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLS 659 (1082)
Q Consensus 587 ~v~~VQ~PQ~F~nid~~Dr-------y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~ 659 (1082)
+++.|+..+.- +.+..+. +..++. +++... .-+.|. +. ....+.
T Consensus 161 ~v~~v~g~~~~-~~~~~~~~~~~~~~~~~~~~-~~~y~~--------------------~~l~~r-~~--~s~~~~---- 211 (439)
T TIGR03111 161 DIHAMTGVILT-DKELIEKTKGRFLKLIRRCE-YFEYAQ--------------------AFLAGR-NF--ESQVNS---- 211 (439)
T ss_pred CeEEEEeEEec-CchhhhhhcchhhhHhHHhH-HHHHHH--------------------HHHhhh-HH--HHhcCC----
Confidence 66666544321 1110000 000000 000000 000000 00 000000
Q ss_pred cccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcC
Q 001413 660 SLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG 739 (1082)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~G 739 (1082)
.---.|....||++++++.|
T Consensus 212 ------------------------------------------------------------~~~~sGa~~~~Rr~~l~~vg 231 (439)
T TIGR03111 212 ------------------------------------------------------------LFTLSGAFSAFRRETILKTQ 231 (439)
T ss_pred ------------------------------------------------------------eEEEccHHHhhhHHHHHHhC
Confidence 00012555688999999999
Q ss_pred CCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHH-CCCEEEEeCCCCCcccccCCCCHHHHH
Q 001413 740 GVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHA-RGWRSIYCMPKRPAFKGSAPINLSDRL 818 (1082)
Q Consensus 740 G~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~-~GWrsvY~~p~~aaf~G~aP~tl~~~l 818 (1082)
|++. ++++||++++++++. .|+++.|+++ +.++.++|+|+++++
T Consensus 232 gf~~---------------------------------~~i~ED~~l~~rl~~~~g~kv~~~~~--a~~~~~~p~t~~~~~ 276 (439)
T TIGR03111 232 LYNS---------------------------------ETVGEDTDMTFQIRELLDGKVYLCEN--AIFYVDPIDGLNKLY 276 (439)
T ss_pred CCCC---------------------------------CCcCccHHHHHHHHHhcCCeEEECCC--CEEEEECCcCHHHHH
Confidence 8654 689999999999975 6999999954 455899999999999
Q ss_pred HHHHHhhccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHHHHHHHHHhCCccc
Q 001413 819 NQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIM 886 (1082)
Q Consensus 819 kQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~LiylllP~l~LltG~~ii 886 (1082)
+||.||++|.+|++....++.. +.+.++.+++.+......+...+|.+++.++++++.++|..+.
T Consensus 277 ~QR~RW~rG~~qv~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (439)
T TIGR03111 277 TQRQRWQRGELEVSHMFFESAN---KSIKGFFSNFMVRRIMYDHTFAFPRMIWYFAMIFLIFLGYPVK 341 (439)
T ss_pred HHHHHHhccHHHHHHHHHhhhh---hchhhhhhHHHHHHHHhhHhhHHHHHHHHHHHHHHHHhccHHH
Confidence 9999999999999975433332 3445666665554555556667787888888888877765433
No 19
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.96 E-value=7.8e-27 Score=268.10 Aligned_cols=236 Identities=25% Similarity=0.310 Sum_probs=167.0
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 427 (1082)
....|.|.|+||+|| |+ ..+.+|+.|+++.+|| ++.++|.|||.++-|.+.+.
T Consensus 50 ~~~~p~vsViIp~yn---e~-~~i~~~l~sl~~q~yp--~~eiiVvdD~s~d~t~~~l~--------------------- 102 (420)
T PRK11204 50 LKEYPGVSILVPCYN---EG-ENVEETISHLLALRYP--NYEVIAINDGSSDNTGEILD--------------------- 102 (420)
T ss_pred cCCCCCEEEEEecCC---CH-HHHHHHHHHHHhCCCC--CeEEEEEECCCCccHHHHHH---------------------
Confidence 356899999999998 75 6789999999999999 67899999998863222111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~ 507 (1082)
+ +++
T Consensus 103 ---------------------------------~-------~~~------------------------------------ 106 (420)
T PRK11204 103 ---------------------------------R-------LAA------------------------------------ 106 (420)
T ss_pred ---------------------------------H-------HHH------------------------------------
Confidence 1 110
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCc
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 586 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~ 586 (1082)
+.|++.++.++++. .||+|+|.+++. +++|||+++|+|.+ +.|++|.+++..| .||
T Consensus 107 ---------~~~~v~~i~~~~n~-----Gka~aln~g~~~----a~~d~i~~lDaD~~-~~~d~L~~l~~~~~~~~---- 163 (420)
T PRK11204 107 ---------QIPRLRVIHLAENQ-----GKANALNTGAAA----ARSEYLVCIDGDAL-LDPDAAAYMVEHFLHNP---- 163 (420)
T ss_pred ---------hCCcEEEEEcCCCC-----CHHHHHHHHHHH----cCCCEEEEECCCCC-CChhHHHHHHHHHHhCC----
Confidence 01346777766533 399999999986 68999999999997 7999999999887 588
Q ss_pred cEEEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCc
Q 001413 587 HVCYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 666 (1082)
Q Consensus 587 ~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 666 (1082)
+++.||...+..|... ..+..+...|... . |..-+-+.++|..
T Consensus 164 ~v~~v~g~~~~~~~~~--~~~~~~~~~~~~~------------~--~~~~~~~~~~~~~--------------------- 206 (420)
T PRK11204 164 RVGAVTGNPRIRNRST--LLGRIQVGEFSSI------------I--GLIKRAQRVYGRV--------------------- 206 (420)
T ss_pred CeEEEECCceeccchh--HHHHHHHHHHHHh------------h--hHHHHHHHHhCCc---------------------
Confidence 8999999877665321 1110000000000 0 0000001111100
Q ss_pred cccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q 001413 667 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~ 746 (1082)
..--|....||+++++++||+.+
T Consensus 207 ------------------------------------------------------~~~~G~~~~~rr~~l~~vgg~~~--- 229 (420)
T PRK11204 207 ------------------------------------------------------FTVSGVITAFRKSALHEVGYWST--- 229 (420)
T ss_pred ------------------------------------------------------eEecceeeeeeHHHHHHhCCCCC---
Confidence 00013445667777788887543
Q ss_pred hhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001413 747 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 826 (1082)
Q Consensus 747 ~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 826 (1082)
..++||++++++++.+||++.|+++. .++++.|+|++++++||.||++
T Consensus 230 ------------------------------~~~~ED~~l~~rl~~~G~~i~~~p~~--~~~~~~p~t~~~~~~Qr~RW~~ 277 (420)
T PRK11204 230 ------------------------------DMITEDIDISWKLQLRGWDIRYEPRA--LCWILMPETLKGLWKQRLRWAQ 277 (420)
T ss_pred ------------------------------CcccchHHHHHHHHHcCCeEEecccc--EEEeECcccHHHHHHHHHHHhc
Confidence 67899999999999999999999543 3499999999999999999999
Q ss_pred cchhHhhhc
Q 001413 827 GSVEILFSR 835 (1082)
Q Consensus 827 G~lQIllsk 835 (1082)
|.+|.+++.
T Consensus 278 G~~~~l~~~ 286 (420)
T PRK11204 278 GGAEVLLKN 286 (420)
T ss_pred CHHHHHHHH
Confidence 999999854
No 20
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.94 E-value=3.3e-25 Score=261.30 Aligned_cols=265 Identities=20% Similarity=0.235 Sum_probs=178.7
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHH-cCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001413 350 QLAAVDIFVSTVDPLKEPPLVTANTVLSIL-AVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 428 (1082)
Q Consensus 350 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~l-a~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 428 (1082)
..|.|+|+||++| |. .++.+||.|++ ++||| ++.|+|.||+..+-|.+.+.|
T Consensus 64 ~~p~vaIlIPA~N---E~-~vI~~~l~s~L~~ldY~--~~eIiVv~d~ndd~T~~~v~~--------------------- 116 (504)
T PRK14716 64 PEKRIAIFVPAWR---EA-DVIGRMLEHNLATLDYE--NYRIFVGTYPNDPATLREVDR--------------------- 116 (504)
T ss_pred CCCceEEEEeccC---ch-hHHHHHHHHHHHcCCCC--CeEEEEEECCCChhHHHHHHH---------------------
Confidence 4899999999999 86 78999999975 79996 799999999888755443222
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001413 429 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 508 (1082)
Q Consensus 429 Pe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~ 508 (1082)
++ +.||+
T Consensus 117 ----------------------------------------l~------------------------~~~p~--------- 123 (504)
T PRK14716 117 ----------------------------------------LA------------------------ARYPR--------- 123 (504)
T ss_pred ----------------------------------------HH------------------------HHCCC---------
Confidence 11 01222
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcc--cCCC---CEEEEecCCCCCCchHHHHHHHHhhcCCC
Q 001413 509 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAV--LTNG---PFLLNLDCDHYINNSKALREAMCFMMDPN 583 (1082)
Q Consensus 509 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav--~tng---p~Il~lDcDh~i~~~~~Lr~amcff~DP~ 583 (1082)
+..+. .+++| .+.||+|||.+++..-- ...| ++|+++|||.+ ++|++|+....++.|
T Consensus 124 ------------v~~vv-~~~~g--p~~Ka~aLN~~l~~~~~~e~~~G~~~d~vvi~DAD~~-v~Pd~Lr~~~~~~~~-- 185 (504)
T PRK14716 124 ------------VHLVI-VPHDG--PTSKADCLNWIYQAIFAFERERGIRFAIIVLHDAEDV-IHPLELRLYNYLLPR-- 185 (504)
T ss_pred ------------eEEEE-eCCCC--CCCHHHHHHHHHHHHHHhhhhcCCCcCEEEEEcCCCC-cCccHHHHHHhhcCC--
Confidence 22111 12222 35799999999875310 1234 99999999998 799999976555433
Q ss_pred CCccEEEEecCccccCCCcccc----cccchhhhhhhhccccccCCCcc-ccccccchhhhhccCCCCCCCCCCCCCCCc
Q 001413 584 LGKHVCYVQFPQRFDGIDRNDR----YANRNTVFFDINLRGLDGIQGPV-YVGTGCVFNRTALYGYEPPLKPKHRKPGLL 658 (1082)
Q Consensus 584 ~g~~v~~VQ~PQ~F~nid~~Dr----y~n~~~vFfdi~~~glDg~qgp~-yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~ 658 (1082)
.++||.|....+.+.+.. |..+....+...++.++.+++++ ..|+|++|||++|--
T Consensus 186 ----~~~VQ~pv~~~~~~~~~~~ag~y~~ef~~~~~~~l~~r~~LG~~~~~~Gtg~afRR~aLe~--------------- 246 (504)
T PRK14716 186 ----HDFVQLPVFSLPRDWGEWVAGTYMDEFAESHLKDLPVREALGGLIPSAGVGTAFSRRALER--------------- 246 (504)
T ss_pred ----CCEEecceeccCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCeeEEeEHHHHHH---------------
Confidence 458999987665433321 22222222333456667777654 678888888888720
Q ss_pred ccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhc
Q 001413 659 SSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMEN 738 (1082)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~ 738 (1082)
...+.
T Consensus 247 ---------------------------------------------------------------------------l~~~~ 251 (504)
T PRK14716 247 ---------------------------------------------------------------------------LAAER 251 (504)
T ss_pred ---------------------------------------------------------------------------HHhhc
Confidence 00122
Q ss_pred CCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCC-------------c
Q 001413 739 GGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRP-------------A 805 (1082)
Q Consensus 739 GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~a-------------a 805 (1082)
||. +|..+++|||+++|++++.+|||++|++.... +
T Consensus 252 GG~-------------------------------~fd~~sLTED~dLglRL~~~G~rv~y~p~ai~~~~~~~~~~~~~v~ 300 (504)
T PRK14716 252 GGQ-------------------------------PFDSDSLTEDYDIGLRLKRAGFRQIFVRVRADDTTDRPDRRGEPIA 300 (504)
T ss_pred CCC-------------------------------CCCCCCcchHHHHHHHHHHCCCEEEEeccccccccccccccccccc
Confidence 441 26678999999999999999999999964421 2
Q ss_pred ccccCCCCHHHHHHHHHHhhccc-hhHhhhcc--cccccccCCCCCcccchhhhhhhh
Q 001413 806 FKGSAPINLSDRLNQVLRWALGS-VEILFSRH--CPIWYGYGGRLKFLERFAYVNTTI 860 (1082)
Q Consensus 806 f~G~aP~tl~~~lkQR~RWA~G~-lQIllsk~--~Pl~~g~~~~Ls~~QRL~Yl~~~l 860 (1082)
+++++|+|++++++||.||++|- +|...+.- .++. .+.+.|++|...+...+
T Consensus 301 t~e~~P~t~~a~~rQR~RW~~Gi~~Q~~~~~gw~~~~~---~~~~~~rdr~~~~~~~~ 355 (504)
T PRK14716 301 TREFFPDTFKAAVRQKARWIYGIAFQGWERLGWKGPAA---TKYMLWRDRKGLLTNLL 355 (504)
T ss_pred ccccCccCHHHHHHHHHHHHhchHHhhHHhcCCCCchh---hhhhHHHHHHHHHHHHH
Confidence 35889999999999999999995 78764211 1111 23466777777665544
No 21
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=6.5e-25 Score=228.79 Aligned_cols=229 Identities=37% Similarity=0.589 Sum_probs=174.4
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||+|| |++..+..++.|+++.+||.+++.++|.|||.+.-|.+-+
T Consensus 1 p~vsviip~~n---~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~-------------------------- 51 (234)
T cd06421 1 PTVDVFIPTYN---EPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALA-------------------------- 51 (234)
T ss_pred CceEEEEecCC---CcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHH--------------------------
Confidence 67999999998 8888999999999999999988999999999875222110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
+++..+ +
T Consensus 52 -----------------------------------~~~~~~-----------------------~--------------- 58 (234)
T cd06421 52 -----------------------------------AELGVE-----------------------Y--------------- 58 (234)
T ss_pred -----------------------------------HHhhcc-----------------------c---------------
Confidence 011000 0
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC-CCCCccEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD-PNLGKHVCY 590 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~D-P~~g~~v~~ 590 (1082)
++.|+.+++ +.+.|+||+|++++. .+++||+.+|+|.+ .+|++|.+.+..|.+ | +++.
T Consensus 59 --------~~~~~~~~~----~~~~~~~~~n~~~~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~~----~~~~ 117 (234)
T cd06421 59 --------GYRYLTRPD----NRHAKAGNLNNALAH----TTGDFVAILDADHV-PTPDFLRRTLGYFLDDP----KVAL 117 (234)
T ss_pred --------CceEEEeCC----CCCCcHHHHHHHHHh----CCCCEEEEEccccC-cCccHHHHHHHHHhcCC----CeEE
Confidence 255666665 445699999999996 58999999999998 689999999999876 7 8999
Q ss_pred EecCccccCCCccc----ccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCc
Q 001413 591 VQFPQRFDGIDRND----RYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSR 666 (1082)
Q Consensus 591 VQ~PQ~F~nid~~D----ry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~ 666 (1082)
||+++.+.+.+..+ .+......|+.....+........+.|++.+|||+++
T Consensus 118 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~r~~~~------------------------- 172 (234)
T cd06421 118 VQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPGRDRWGAAFCCGSGAVVRREAL------------------------- 172 (234)
T ss_pred EecceEEecCCcchhHHHHHHHHHHHHHHHHHHHHhhcCCceecCceeeEeHHHH-------------------------
Confidence 99999998776542 2233344455444444444444555555555555444
Q ss_pred cccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q 001413 667 KKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSAT 746 (1082)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~ 746 (1082)
+++||++.
T Consensus 173 ---------------------------------------------------------------------~~ig~~~~--- 180 (234)
T cd06421 173 ---------------------------------------------------------------------DEIGGFPT--- 180 (234)
T ss_pred ---------------------------------------------------------------------HHhCCCCc---
Confidence 56787654
Q ss_pred hhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001413 747 HETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 826 (1082)
Q Consensus 747 ~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 826 (1082)
..+.||++++++++.+||+++|.+... +++..|.+++++++||.||.+
T Consensus 181 ------------------------------~~~~eD~~l~~r~~~~g~~i~~~~~~~--~~~~~~~~~~~~~~q~~rw~~ 228 (234)
T cd06421 181 ------------------------------DSVTEDLATSLRLHAKGWRSVYVPEPL--AAGLAPETLAAYIKQRLRWAR 228 (234)
T ss_pred ------------------------------cceeccHHHHHHHHHcCceEEEecCcc--ccccCCccHHHHHHHHHHHhc
Confidence 467899999999999999999996543 489999999999999999999
Q ss_pred cchhHh
Q 001413 827 GSVEIL 832 (1082)
Q Consensus 827 G~lQIl 832 (1082)
|++|++
T Consensus 229 ~~~~~~ 234 (234)
T cd06421 229 GMLQIL 234 (234)
T ss_pred CCeeeC
Confidence 999864
No 22
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.93 E-value=3.2e-24 Score=261.96 Aligned_cols=199 Identities=19% Similarity=0.294 Sum_probs=133.9
Q ss_pred CcchhhhHHHHHhhccc---CCC--CEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccc----
Q 001413 535 HKKAGAMNALVRVSAVL---TNG--PFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDR---- 605 (1082)
Q Consensus 535 h~KAGalNallrvSav~---tng--p~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dr---- 605 (1082)
+.||+|||.++....-. +.+ +.++++|||.+ ++|++|+ .+.+|+++ + ++||.|..-.+...+..
T Consensus 132 ~gKa~aLN~~l~~~~~~e~~~~~~~~vvvi~DAD~~-v~pd~L~-~~~~l~~~----~-~~VQ~p~~p~~~~~~~~~~~~ 204 (727)
T PRK11234 132 TSKADCLNNVLDAITQFERSANFAFAGFILHDAEDV-ISPMELR-LFNYLVER----K-DLIQIPVYPFEREWTHFTSGT 204 (727)
T ss_pred CCHHHHHHHHHHHHHhhhcccCCcccEEEEEcCCCC-CChhHHH-HHHhhcCC----C-CeEeecccCCCccHHHHHHHH
Confidence 46999999999863111 133 46888999997 7999998 67888887 4 89999966333222221
Q ss_pred cccchhhhhhhhccccccCCCc-cccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCC
Q 001413 606 YANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 684 (1082)
Q Consensus 606 y~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1082)
|..+....+...+++++.++|+ .+.|+|++|.|++|
T Consensus 205 ~~~EFa~~~~~~~~~~~~lgg~~~l~G~~~af~Rr~l------------------------------------------- 241 (727)
T PRK11234 205 YIDEFAELHGKDVPVREALAGQVPSAGVGTCFSRRAV------------------------------------------- 241 (727)
T ss_pred HHHHHHHHhhhhhHHHHHcCCCcccCCceEEEecccH-------------------------------------------
Confidence 2233334455667888888665 45678888844433
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcC-CCCCCcchhhHHHHHHHhhccccc
Q 001413 685 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENG-GVPQSATHETLLKEAIHVISCGYE 763 (1082)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~G-G~p~~~~~~~~~~eai~v~sC~YE 763 (1082)
+++.+.| |+
T Consensus 242 ------------------------------------------------~al~~~ggg~---------------------- 251 (727)
T PRK11234 242 ------------------------------------------------TALLEDGDGI---------------------- 251 (727)
T ss_pred ------------------------------------------------HHHHHhcCCC----------------------
Confidence 1223455 43
Q ss_pred cccccccccccccccccchHHHHHHHHHCCCEEEEeCCCC---------------------CcccccCCCCHHHHHHHHH
Q 001413 764 DKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKR---------------------PAFKGSAPINLSDRLNQVL 822 (1082)
Q Consensus 764 ~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~---------------------aaf~G~aP~tl~~~lkQR~ 822 (1082)
||..+++|||+++|++|+.+||+++|++..+ .++++..|+|+++.++||.
T Consensus 252 ---------~~~~~~lTED~dlg~rL~~~G~~v~f~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~t~~~~~rQR~ 322 (727)
T PRK11234 252 ---------AFDVQSLTEDYDIGFRLKEKGMREIFVRFPVVDEAKEREQRKFLQHARTSNMICVREYFPDTFSAAVRQKS 322 (727)
T ss_pred ---------CcCCCcchHHHHHHHHHHHCCCEEEEcccccccccccccccccccccccccceEEEEeCchhHHHHHHHHH
Confidence 4788999999999999999999999996111 3367888999999999999
Q ss_pred Hhhcc-chhHhhhccccccccc--CCCCCcccchhhhhhhhhhhhH
Q 001413 823 RWALG-SVEILFSRHCPIWYGY--GGRLKFLERFAYVNTTIYPLTA 865 (1082)
Q Consensus 823 RWA~G-~lQIllsk~~Pl~~g~--~~~Ls~~QRL~Yl~~~ly~l~s 865 (1082)
||.+| .+|.+... .|.+. .+-+.|+.|-.++..++..+..
T Consensus 323 RW~~G~~~q~~~~~---~w~~~~~~~~~~~r~r~~~~~~~~s~~~~ 365 (727)
T PRK11234 323 RWIIGIVFQGFKTL---GWTSSLTLNYFLWRDRKGAITNFVSFLAM 365 (727)
T ss_pred HHHcccHHHHHHHh---CCCcchhhhhhhHHhhhHHHHHHHHHHHH
Confidence 99999 58887432 12110 1124455565555544444333
No 23
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.92 E-value=2.1e-24 Score=227.39 Aligned_cols=229 Identities=22% Similarity=0.339 Sum_probs=162.6
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||+|| |. ..+..++.|+++++||.+++.|+|.|| ++.-|++.+.+.
T Consensus 1 p~vSViIp~yN---e~-~~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t~~~~~~~----------------------- 52 (232)
T cd06437 1 PMVTVQLPVFN---EK-YVVERLIEAACALDYPKDRLEIQVLDD-STDETVRLAREI----------------------- 52 (232)
T ss_pred CceEEEEecCC---cH-HHHHHHHHHHHhcCCCccceEEEEEEC-CCCcHHHHHHHH-----------------------
Confidence 57999999998 85 678999999999999999999999998 555444432221
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
..++..
T Consensus 53 ---------------------------~~~~~~----------------------------------------------- 58 (232)
T cd06437 53 ---------------------------VEEYAA----------------------------------------------- 58 (232)
T ss_pred ---------------------------HHHHhh-----------------------------------------------
Confidence 000000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 591 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~V 591 (1082)
.-|++.++.+.+++|+ ||+|+|++++. ..++||+++|+|.+ +.|++|++.+.++.|| ++++|
T Consensus 59 -----~~~~i~~~~~~~~~G~----k~~a~n~g~~~----a~~~~i~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v 120 (232)
T cd06437 59 -----QGVNIKHVRRADRTGY----KAGALAEGMKV----AKGEYVAIFDADFV-PPPDFLQKTPPYFADP----KLGFV 120 (232)
T ss_pred -----cCCceEEEECCCCCCC----chHHHHHHHHh----CCCCEEEEEcCCCC-CChHHHHHhhhhhcCC----CeEEE
Confidence 0025788888776665 99999999986 58999999999998 6999999977888888 79999
Q ss_pred ecCccccCCCccc--ccc-cchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccc
Q 001413 592 QFPQRFDGIDRND--RYA-NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 668 (1082)
Q Consensus 592 Q~PQ~F~nid~~D--ry~-n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~ 668 (1082)
|....+.+.+.+- ++. -....++.+.+.+.......+
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------- 160 (232)
T cd06437 121 QTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSSTGLFF---------------------------------------- 160 (232)
T ss_pred ecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhhcCCeE----------------------------------------
Confidence 9987665543221 000 000011111111111110000
Q ss_pred cCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchh
Q 001413 669 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 748 (1082)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~ 748 (1082)
.-.|+...||+++++++||++.
T Consensus 161 -----------------------------------------------------~~~g~~~~~rr~~~~~vgg~~~----- 182 (232)
T cd06437 161 -----------------------------------------------------NFNGTAGVWRKECIEDAGGWNH----- 182 (232)
T ss_pred -----------------------------------------------------EeccchhhhhHHHHHHhCCCCC-----
Confidence 0014445677777888998764
Q ss_pred hHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001413 749 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 828 (1082)
Q Consensus 749 ~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~ 828 (1082)
.++.||+++++||+.+||+++|++. . .++...|+|+.++++||+||++|.
T Consensus 183 ----------------------------~~~~ED~~l~~rl~~~G~~~~~~~~-~-~v~~~~~~~~~~~~~q~~rW~~g~ 232 (232)
T cd06437 183 ----------------------------DTLTEDLDLSYRAQLKGWKFVYLDD-V-VVPAELPASMSAYRSQQHRWSKGP 232 (232)
T ss_pred ----------------------------CcchhhHHHHHHHHHCCCeEEEecc-c-eeeeeCCcCHHHHHHHHHHhccCC
Confidence 4678999999999999999999954 3 358999999999999999999984
No 24
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.91 E-value=8.1e-23 Score=214.86 Aligned_cols=173 Identities=27% Similarity=0.410 Sum_probs=121.2
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGI 600 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~ni 600 (1082)
+.++..++.+| .||||+|.+++.+. .+++||+.+|+|-. ..|++|.+.+.+|.+| +++.||+++.+.+.
T Consensus 58 i~~i~~~~~~G----~~~~a~n~g~~~a~--~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~~~~~~ 126 (236)
T cd06435 58 FRFFHVEPLPG----AKAGALNYALERTA--PDAEIIAVIDADYQ-VEPDWLKRLVPIFDDP----RVGFVQAPQDYRDG 126 (236)
T ss_pred EEEEEcCCCCC----CchHHHHHHHHhcC--CCCCEEEEEcCCCC-cCHHHHHHHHHHhcCC----CeeEEecCccccCC
Confidence 56666665444 49999999998742 46899999999986 7999999999998877 79999998765432
Q ss_pred Cccccccc----chhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccC
Q 001413 601 DRNDRYAN----RNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKG 676 (1082)
Q Consensus 601 d~~Dry~n----~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (1082)
.. ..+.- ....+|...++.....+..+..
T Consensus 127 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------------------------- 159 (236)
T cd06435 127 EE-SLFKRMCYAEYKGFFDIGMVSRNERNAIIQH---------------------------------------------- 159 (236)
T ss_pred Cc-cHHHHHHhHHHHHHHHHHhccccccCceEEe----------------------------------------------
Confidence 11 11100 0001111111111111111222
Q ss_pred CCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHH
Q 001413 677 SDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIH 756 (1082)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~ 756 (1082)
|+...|++++++++||+..
T Consensus 160 ------------------------------------------------g~~~~~rr~~~~~iGgf~~------------- 178 (236)
T cd06435 160 ------------------------------------------------GTMCLIRRSALDDVGGWDE------------- 178 (236)
T ss_pred ------------------------------------------------cceEEEEHHHHHHhCCCCC-------------
Confidence 3333456666678888654
Q ss_pred hhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHhhh
Q 001413 757 VISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEILFS 834 (1082)
Q Consensus 757 v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQIlls 834 (1082)
....||++++++++.+||++.|++... .+...|.|+.++++||+||++|++|++.+
T Consensus 179 --------------------~~~~eD~dl~~r~~~~G~~~~~~~~~~--~~~~~~~~~~~~~~q~~rw~~g~~~~~~~ 234 (236)
T cd06435 179 --------------------WCITEDSELGLRMHEAGYIGVYVAQSY--GHGLIPDTFEAFKKQRFRWAYGAVQILKK 234 (236)
T ss_pred --------------------ccccchHHHHHHHHHCCcEEEEcchhh--ccCcCcccHHHHHHHHHHHhcchhhhhhc
Confidence 457899999999999999999996433 38999999999999999999999999974
No 25
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.90 E-value=5.9e-23 Score=218.51 Aligned_cols=233 Identities=24% Similarity=0.301 Sum_probs=164.2
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||+|| |+ ..+..|+.|+++.+||.+++.++|.|||.++-|.+.+.+
T Consensus 1 p~vsIiIp~~N---e~-~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~------------------------ 52 (241)
T cd06427 1 PVYTILVPLYK---EA-EVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARA------------------------ 52 (241)
T ss_pred CeEEEEEecCC---cH-HHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHH------------------------
Confidence 67999999999 86 788999999999999988999999999987643332111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
+. . +
T Consensus 53 -------------------------------------~~-~----~---------------------------------- 56 (241)
T cd06427 53 -------------------------------------LR-L----P---------------------------------- 56 (241)
T ss_pred -------------------------------------hc-c----C----------------------------------
Confidence 00 0 0
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 591 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~V 591 (1082)
.-.+++++.+.+ ...|++|+|++++. ++|+||+.+|+|.+ ..+++|.+++.+|.+. ..++++|
T Consensus 57 -----~~~~i~~~~~~~-----~~G~~~a~n~g~~~----a~gd~i~~~DaD~~-~~~~~l~~~~~~~~~~--~~~v~~~ 119 (241)
T cd06427 57 -----SIFRVVVVPPSQ-----PRTKPKACNYALAF----ARGEYVVIYDAEDA-PDPDQLKKAVAAFARL--DDKLACV 119 (241)
T ss_pred -----CCeeEEEecCCC-----CCchHHHHHHHHHh----cCCCEEEEEcCCCC-CChHHHHHHHHHHHhc--CCCEEEE
Confidence 001244444322 23599999999996 68999999999998 6899999999988621 1289999
Q ss_pred ecCccccCCCccc--c-cccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccc
Q 001413 592 QFPQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 668 (1082)
Q Consensus 592 Q~PQ~F~nid~~D--r-y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~ 668 (1082)
|.+..+++...+- + +......+|+..+++....+.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 160 (241)
T cd06427 120 QAPLNYYNARENWLTRMFALEYAAWFDYLLPGLARLGLPIP--------------------------------------- 160 (241)
T ss_pred eCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHhcCCeee---------------------------------------
Confidence 9988877543210 0 000011112222222221111110
Q ss_pred cCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchh
Q 001413 669 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 748 (1082)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~ 748 (1082)
..|+...|++++++++||+..
T Consensus 161 ------------------------------------------------------~~g~~~~~rr~~~~~vgg~~~----- 181 (241)
T cd06427 161 ------------------------------------------------------LGGTSNHFRTDVLRELGGWDP----- 181 (241)
T ss_pred ------------------------------------------------------cCCchHHhhHHHHHHcCCCCc-----
Confidence 124445677778888898643
Q ss_pred hHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001413 749 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 828 (1082)
Q Consensus 749 ~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~ 828 (1082)
...+||+++++|++.+||+++|++ .. ++...|+|++.+++||.||++|.
T Consensus 182 ----------------------------~~~~eD~~l~~rl~~~G~r~~~~~-~~--~~~~~~~~~~~~~~q~~Rw~~g~ 230 (241)
T cd06427 182 ----------------------------FNVTEDADLGLRLARAGYRTGVLN-ST--TLEEANNALGNWIRQRSRWIKGY 230 (241)
T ss_pred ----------------------------ccchhhHHHHHHHHHCCceEEEec-cc--ccccCcHhHHHHHHHHHHHhccH
Confidence 467899999999999999999994 33 37899999999999999999999
Q ss_pred hhHhhh
Q 001413 829 VEILFS 834 (1082)
Q Consensus 829 lQIlls 834 (1082)
+|++..
T Consensus 231 ~~~~~~ 236 (241)
T cd06427 231 MQTWLV 236 (241)
T ss_pred HHHHHH
Confidence 999964
No 26
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.88 E-value=5e-23 Score=214.97 Aligned_cols=224 Identities=30% Similarity=0.440 Sum_probs=133.8
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||++| |+ ..+..||.|+++++|| ++.++|+||+...-|.+.+
T Consensus 1 P~v~Vvip~~~---~~-~~l~~~l~sl~~~~~~--~~~v~vvd~~~~~~~~~~~-------------------------- 48 (228)
T PF13641_consen 1 PRVSVVIPAYN---ED-DVLRRCLESLLAQDYP--RLEVVVVDDGSDDETAEIL-------------------------- 48 (228)
T ss_dssp --EEEE--BSS----H-HHHHHHHHHHTTSHHH--TEEEEEEEE-SSS-GCTTH--------------------------
T ss_pred CEEEEEEEecC---CH-HHHHHHHHHHHcCCCC--CeEEEEEECCCChHHHHHH--------------------------
Confidence 78999999998 76 4999999999999995 5999999999875222111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
+++++. .|..
T Consensus 49 -----------------------------------~~~~~~---~~~~-------------------------------- 58 (228)
T PF13641_consen 49 -----------------------------------RALAAR---YPRV-------------------------------- 58 (228)
T ss_dssp -----------------------------------HHHHHT---TGG---------------------------------
T ss_pred -----------------------------------HHHHHH---cCCC--------------------------------
Confidence 111111 0000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 591 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~V 591 (1082)
++.++.+.+++| ...|++|+|.+++. ..+++|+++|+|.+ +.|++|++++.+|.+| +++.|
T Consensus 59 --------~v~vi~~~~~~g--~~~k~~a~n~~~~~----~~~d~i~~lD~D~~-~~p~~l~~~~~~~~~~----~~~~v 119 (228)
T PF13641_consen 59 --------RVRVIRRPRNPG--PGGKARALNEALAA----ARGDYILFLDDDTV-LDPDWLERLLAAFADP----GVGAV 119 (228)
T ss_dssp --------GEEEEE----HH--HHHHHHHHHHHHHH-------SEEEEE-SSEE-E-CHHHHHHHHHHHBS----S--EE
T ss_pred --------ceEEeecCCCCC--cchHHHHHHHHHHh----cCCCEEEEECCCcE-ECHHHHHHHHHHHHhC----CCCeE
Confidence 266777665331 23699999999997 56999999999998 6999999999988888 89999
Q ss_pred ecCccccCCCcccccccchhhhhhh----hccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCcc
Q 001413 592 QFPQRFDGIDRNDRYANRNTVFFDI----NLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRK 667 (1082)
Q Consensus 592 Q~PQ~F~nid~~Dry~n~~~vFfdi----~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~ 667 (1082)
|.+..+++ +.+ .+..-...++.. ...+....+...+.|++++|||++|
T Consensus 120 ~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~~-------------------------- 171 (228)
T PF13641_consen 120 GGPVFPDN-DRN-WLTRLQDLFFARWHLRFRSGRRALGVAFLSGSGMLFRRSAL-------------------------- 171 (228)
T ss_dssp EEEEEETT-CCC-EEEE-TT--S-EETTTS-TT-B----S-B--TEEEEEHHHH--------------------------
T ss_pred eeeEeecC-CCC-HHHHHHHHHHhhhhhhhhhhhcccceeeccCcEEEEEHHHH--------------------------
Confidence 98886664 322 111111122111 1222233333444555555555544
Q ss_pred ccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcch
Q 001413 668 KNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATH 747 (1082)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~ 747 (1082)
+++||+..
T Consensus 172 --------------------------------------------------------------------~~~g~fd~---- 179 (228)
T PF13641_consen 172 --------------------------------------------------------------------EEVGGFDP---- 179 (228)
T ss_dssp --------------------------------------------------------------------HHH-S--S----
T ss_pred --------------------------------------------------------------------HHhCCCCC----
Confidence 56776543
Q ss_pred hhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001413 748 ETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 827 (1082)
Q Consensus 748 ~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G 827 (1082)
..+.||.++++++..+||+++|++.. .++...|.|++++++||.||++|
T Consensus 180 -----------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~--~v~~~~~~~~~~~~~q~~RW~~g 228 (228)
T PF13641_consen 180 -----------------------------FILGEDFDLCLRLRAAGWRIVYAPDA--LVYHEEPSSLKAFFKQRFRWSRG 228 (228)
T ss_dssp -----------------------------SSSSHHHHHHHHHHHTT--EEEEEEE--EEEE--SSSTHHHHHHHHHHH--
T ss_pred -----------------------------CCcccHHHHHHHHHHCCCcEEEECCc--EEEEeCCCCHHHHHHHHhccCcC
Confidence 57789999999999999999999543 35899999999999999999987
No 27
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.84 E-value=1.1e-19 Score=207.49 Aligned_cols=235 Identities=19% Similarity=0.226 Sum_probs=157.1
Q ss_pred CCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCC
Q 001413 349 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 428 (1082)
Q Consensus 349 ~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRa 428 (1082)
...|+|.|+||++| |.+ .+.+++.|++++|||. +.++|.||+.+.-|.+.+.
T Consensus 38 ~~~p~VSViiP~~n---ee~-~l~~~L~Sl~~q~Yp~--~EIivvdd~s~D~t~~iv~---------------------- 89 (373)
T TIGR03472 38 RAWPPVSVLKPLHG---DEP-ELYENLASFCRQDYPG--FQMLFGVQDPDDPALAVVR---------------------- 89 (373)
T ss_pred CCCCCeEEEEECCC---CCh-hHHHHHHHHHhcCCCC--eEEEEEeCCCCCcHHHHHH----------------------
Confidence 34899999999999 875 5679999999999995 8899999987763322111
Q ss_pred chhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccC
Q 001413 429 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 508 (1082)
Q Consensus 429 Pe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~ 508 (1082)
+ +.+ +||.
T Consensus 90 --------------------------------~-------~~~------------------------~~p~--------- 97 (373)
T TIGR03472 90 --------------------------------R-------LRA------------------------DFPD--------- 97 (373)
T ss_pred --------------------------------H-------HHH------------------------hCCC---------
Confidence 1 110 0110
Q ss_pred CCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccE
Q 001413 509 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHV 588 (1082)
Q Consensus 509 g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v 588 (1082)
.++.++.+.++.| .+.|++|+|++++. +.+|+|+.+|+|.+ +.|++|++.+..|.|| ++
T Consensus 98 ----------~~i~~v~~~~~~G--~~~K~~~l~~~~~~----a~ge~i~~~DaD~~-~~p~~L~~lv~~~~~~----~v 156 (373)
T TIGR03472 98 ----------ADIDLVIDARRHG--PNRKVSNLINMLPH----ARHDILVIADSDIS-VGPDYLRQVVAPLADP----DV 156 (373)
T ss_pred ----------CceEEEECCCCCC--CChHHHHHHHHHHh----ccCCEEEEECCCCC-cChhHHHHHHHHhcCC----Cc
Confidence 1356664444333 45799999998875 68999999999997 6999999999999998 78
Q ss_pred EEEecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccc
Q 001413 589 CYVQFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKK 668 (1082)
Q Consensus 589 ~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~ 668 (1082)
+.|+.+.+..+ ... +.++... ...+.. ++-+. ... ..+ |-
T Consensus 157 ~~V~~~~~~~~--~~~-~~~~l~~------~~~~~~---~~~~~--~~~-~~~-~~------------------------ 196 (373)
T TIGR03472 157 GLVTCLYRGRP--VPG-FWSRLGA------MGINHN---FLPSV--MVA-RAL-GR------------------------ 196 (373)
T ss_pred ceEeccccCCC--CCC-HHHHHHH------HHhhhh---hhHHH--HHH-Hhc-cC------------------------
Confidence 99998644221 111 1111000 000000 00000 000 000 00
Q ss_pred cCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchh
Q 001413 669 NSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHE 748 (1082)
Q Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~ 748 (1082)
.....|++-.|||++++++||+...
T Consensus 197 ---------------------------------------------------~~~~~G~~~a~RR~~l~~iGGf~~~---- 221 (373)
T TIGR03472 197 ---------------------------------------------------ARFCFGATMALRRATLEAIGGLAAL---- 221 (373)
T ss_pred ---------------------------------------------------CccccChhhheeHHHHHHcCChHHh----
Confidence 0002466778889999999997631
Q ss_pred hHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001413 749 TLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 828 (1082)
Q Consensus 749 ~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~ 828 (1082)
..+++||++++.+++.+||++.|.+.. ..+...|+|++++++||.||++..
T Consensus 222 ---------------------------~~~~~ED~~l~~~i~~~G~~v~~~~~~--v~~~~~~~s~~~~~~q~~RW~r~~ 272 (373)
T TIGR03472 222 ---------------------------AHHLADDYWLGELVRALGLRVVLAPVV--VDTDVHETSFATLLAHELRWSRTI 272 (373)
T ss_pred ---------------------------cccchHHHHHHHHHHHcCCeEEecchh--hhcCCCccCHHHHHHHHHHHHhhh
Confidence 146889999999999999999998543 336788899999999999997543
No 28
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.83 E-value=1e-18 Score=212.12 Aligned_cols=171 Identities=20% Similarity=0.271 Sum_probs=124.3
Q ss_pred CcchhhhHHHHHhh---cccCCCCE--EEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCcc-ccCCCcc---cc
Q 001413 535 HKKAGAMNALVRVS---AVLTNGPF--LLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR-FDGIDRN---DR 605 (1082)
Q Consensus 535 h~KAGalNallrvS---av~tngp~--Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~-F~nid~~---Dr 605 (1082)
..||.|||.++... .-.+.++| |+++|||-+ ++|++|+. |-++++. + -+||.|-. ..|...+ .-
T Consensus 140 ~gKa~ALN~~l~~~~~~e~~~~~~fa~vvi~DAEd~-~~P~~L~~-~~~~~~~----~-~~iQ~pV~~~~~~~~~~l~~~ 212 (703)
T PRK15489 140 TCKADCLNWIIQAIFRYEAGHGIEFAGVILHDSEDV-LHPLELKY-FNYLLPR----K-DLVQLPVLSLERKWYEWVAGT 212 (703)
T ss_pred CCHHHHHHHHHHHHHhhhhhccCccceEEEEcCCCC-CChhHHHH-HHhhcCC----c-ceeeeeeccCCCccccHHHHH
Confidence 45999999988752 11234555 999999997 89999986 5666643 1 36998732 2221111 23
Q ss_pred cccchhhhhhhhccccccCCCccc-cccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCC
Q 001413 606 YANRNTVFFDINLRGLDGIQGPVY-VGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSK 684 (1082)
Q Consensus 606 y~n~~~vFfdi~~~glDg~qgp~y-vGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (1082)
|+.+....|+..|+++..+.+++. .|||++|||.||--
T Consensus 213 ~~~Efa~~~~~~l~~r~~l~~~ipl~Gv~~~frr~aL~~----------------------------------------- 251 (703)
T PRK15489 213 YMDEFAEWHQKDLVVRESLTGTVPSAGVGTCFSRRALLA----------------------------------------- 251 (703)
T ss_pred HHHHHHHHhhhHHHHHHHcCCceeccCcceeeeHHHHHH-----------------------------------------
Confidence 666777778888999988888776 56899999998820
Q ss_pred CCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhcccccc
Q 001413 685 HVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYED 764 (1082)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~ 764 (1082)
+.+.||-
T Consensus 252 --------------------------------------------------l~~~gg~----------------------- 258 (703)
T PRK15489 252 --------------------------------------------------LMKERGN----------------------- 258 (703)
T ss_pred --------------------------------------------------HHHhcCC-----------------------
Confidence 1122331
Q ss_pred ccccccccccccccccchHHHHHHHHHCCCEEEEeCC---------------------CCCcccccCCCCHHHHHHHHHH
Q 001413 765 KTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMP---------------------KRPAFKGSAPINLSDRLNQVLR 823 (1082)
Q Consensus 765 ~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p---------------------~~aaf~G~aP~tl~~~lkQR~R 823 (1082)
.+|+.+|+|||+++|+||+.+|||+.|+.- ...++....|.|+.+.++||.|
T Consensus 259 -------~~~n~~sLTED~Dlg~RL~~~G~r~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~tre~fP~~~~a~~rQk~R 331 (703)
T PRK15489 259 -------QPFNTSSLTEDYDFSFRLAELGMQEIFVRFPVQFRVRRTSWFGPRRERTREMLLCVREYFPDTFRTAYRQKAR 331 (703)
T ss_pred -------CCCCCCCchHhHHHHHHHHHCCCceEEEEEeccccccccccccccccccccCceeehhhCcHHHHHHHHHHHH
Confidence 147789999999999999999999999321 1245678899999999999999
Q ss_pred hhccch-hHhh
Q 001413 824 WALGSV-EILF 833 (1082)
Q Consensus 824 WA~G~l-QIll 833 (1082)
|..|-. |-..
T Consensus 332 W~~Gi~~q~~~ 342 (703)
T PRK15489 332 WVLGIAFQGWE 342 (703)
T ss_pred HHhHHHHhhHH
Confidence 999986 7753
No 29
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.83 E-value=1.5e-20 Score=201.95 Aligned_cols=52 Identities=17% Similarity=0.212 Sum_probs=46.7
Q ss_pred ccccchHHHHHHHHHCCCEEEE--eCCCCCcccccCCCCHHHHHHHHHHhhccchh
Q 001413 777 GSVTEDILTGFKMHARGWRSIY--CMPKRPAFKGSAPINLSDRLNQVLRWALGSVE 830 (1082)
Q Consensus 777 gsVTEDi~Tg~rLh~~GWrsvY--~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQ 830 (1082)
.+++||++++++|..+||++.| ++. +.++.++|+|++++++||+||++|++.
T Consensus 190 ~~~~ED~~l~~~l~~~G~~~~~~~~~~--a~~~~~~p~s~~~~~~QR~RW~~g~~~ 243 (244)
T cd04190 190 LDLGEDRILCTLLLKAGPKRKYLYVPG--AVAETDVPETFVELLSQRRRWINSTIA 243 (244)
T ss_pred HhHhcccceeHHHhccCCccEEEEecc--cEEEEECCCCHHHHHHHhHhhhccccc
Confidence 5799999999999999999999 754 344999999999999999999999863
No 30
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.81 E-value=3.8e-19 Score=184.19 Aligned_cols=226 Identities=17% Similarity=0.207 Sum_probs=152.4
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001413 356 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 435 (1082)
Q Consensus 356 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yFs~ 435 (1082)
|+||||| |+ ..+.+||.|++..+||.+++.|+|.|||.+.-|.+.+.
T Consensus 1 viip~~n---~~-~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~----------------------------- 47 (229)
T cd04192 1 VVIAARN---EA-ENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILE----------------------------- 47 (229)
T ss_pred CEEEecC---cH-HHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHH-----------------------------
Confidence 6899998 75 78999999999999999889999999998763222110
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCCCC
Q 001413 436 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 515 (1082)
Q Consensus 436 ~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~~~ 515 (1082)
|. + +
T Consensus 48 -----------------------~~--------~--~------------------------------------------- 51 (229)
T cd04192 48 -----------------------FA--------A--A------------------------------------------- 51 (229)
T ss_pred -----------------------HH--------H--h-------------------------------------------
Confidence 00 0 0
Q ss_pred CCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCc
Q 001413 516 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQ 595 (1082)
Q Consensus 516 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ 595 (1082)
...|++.++.++. + .-..|+.++|.++.. ++++||+++|+|.+ +.|++|.+.+..|.++ ..+.|+.++
T Consensus 52 ~~~~~v~~~~~~~--~-~~~g~~~a~n~g~~~----~~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v~~~~ 119 (229)
T cd04192 52 KPNFQLKILNNSR--V-SISGKKNALTTAIKA----AKGDWIVTTDADCV-VPSNWLLTFVAFIQKE----QIGLVAGPV 119 (229)
T ss_pred CCCcceEEeeccC--c-ccchhHHHHHHHHHH----hcCCEEEEECCCcc-cCHHHHHHHHHHhhcC----CCcEEeeee
Confidence 0012355555443 1 235689999999986 68999999999997 6899999999977665 577888888
Q ss_pred cccCCCcc-cccccchhhhhhhhccccccCCCc-cccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcC
Q 001413 596 RFDGIDRN-DRYANRNTVFFDINLRGLDGIQGP-VYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSS 673 (1082)
Q Consensus 596 ~F~nid~~-Dry~n~~~vFfdi~~~glDg~qgp-~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1082)
.+...+.. ..+..-...+......+.-+++.+ ..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------- 155 (229)
T cd04192 120 IYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMC-------------------------------------------- 155 (229)
T ss_pred eecCCccHHHHHHHHHHHHHHHHHhhHHHhcCcccc--------------------------------------------
Confidence 87622211 011100000000011111111111 11
Q ss_pred ccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHH
Q 001413 674 KKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKE 753 (1082)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~e 753 (1082)
.|++..|++++++++||++..
T Consensus 156 --------------------------------------------------~g~~~~~rr~~~~~~ggf~~~--------- 176 (229)
T cd04192 156 --------------------------------------------------NGANMAYRKEAFFEVGGFEGN--------- 176 (229)
T ss_pred --------------------------------------------------ccceEEEEHHHHHHhcCCccc---------
Confidence 133335566677788987641
Q ss_pred HHHhhccccccccccccccccccccccchHHHHHHHHHCCC-EEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001413 754 AIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGW-RSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 827 (1082)
Q Consensus 754 ai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GW-rsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G 827 (1082)
....+||.++.+++..+|| ++.|+..+...++...|.+++++++||+||++|
T Consensus 177 ----------------------~~~~~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~Rw~~g 229 (229)
T cd04192 177 ----------------------DHIASGDDELLLAKVASKYPKVAYLKNPEALVTTQPVTSWKELLNQRKRWASK 229 (229)
T ss_pred ----------------------cccccCCHHHHHHHHHhCCCCEEEeeCcchheecCCchhHHHHHHHHHHhhcC
Confidence 2467899999999999999 999875444555899999999999999999987
No 31
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.80 E-value=1.3e-18 Score=179.67 Aligned_cols=195 Identities=19% Similarity=0.225 Sum_probs=144.8
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||+|| |... +..++-|+++.+||. +.++|.|||++.-|.+.+.+
T Consensus 1 p~vsviip~~n---~~~~-l~~~L~sl~~q~~~~--~eiivVdd~s~d~t~~~~~~------------------------ 50 (196)
T cd02520 1 PGVSILKPLCG---VDPN-LYENLESFFQQDYPK--YEILFCVQDEDDPAIPVVRK------------------------ 50 (196)
T ss_pred CCeEEEEecCC---CCcc-HHHHHHHHHhccCCC--eEEEEEeCCCcchHHHHHHH------------------------
Confidence 67999999998 7654 689999999999995 89999999998643332111
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
+.++ ||.+
T Consensus 51 -------------------------------------~~~~------------------------~~~~----------- 58 (196)
T cd02520 51 -------------------------------------LIAK------------------------YPNV----------- 58 (196)
T ss_pred -------------------------------------HHHH------------------------CCCC-----------
Confidence 1100 0000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV 591 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~V 591 (1082)
++.|+...++.| ...|++|||++++. ..++|++++|+|.. ..|++|.+.+..+.+| +++.|
T Consensus 59 --------~~~~~~~~~~~g--~~~~~~~~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~~~~~----~~~~v 119 (196)
T cd02520 59 --------DARLLIGGEKVG--INPKVNNLIKGYEE----ARYDILVISDSDIS-VPPDYLRRMVAPLMDP----GVGLV 119 (196)
T ss_pred --------cEEEEecCCcCC--CCHhHHHHHHHHHh----CCCCEEEEECCCce-EChhHHHHHHHHhhCC----CCCeE
Confidence 133444443222 23589999999986 68999999999997 6899999999888888 57777
Q ss_pred ecCccccCCCcccccccchhhhhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCC
Q 001413 592 QFPQRFDGIDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSK 671 (1082)
Q Consensus 592 Q~PQ~F~nid~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1082)
+.. ...|+++++||+++
T Consensus 120 ~~~---------------------------------~~~g~~~~~r~~~~------------------------------ 136 (196)
T cd02520 120 TCL---------------------------------CAFGKSMALRREVL------------------------------ 136 (196)
T ss_pred Eee---------------------------------cccCceeeeEHHHH------------------------------
Confidence 764 34566777777665
Q ss_pred cCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHH
Q 001413 672 SSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLL 751 (1082)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~ 751 (1082)
+++||++.
T Consensus 137 ----------------------------------------------------------------~~~ggf~~-------- 144 (196)
T cd02520 137 ----------------------------------------------------------------DAIGGFEA-------- 144 (196)
T ss_pred ----------------------------------------------------------------HhccChHH--------
Confidence 35566532
Q ss_pred HHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhcc
Q 001413 752 KEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALG 827 (1082)
Q Consensus 752 ~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G 827 (1082)
....+.||+++++++..+||+++|+... .++...|.+++++++||.||++.
T Consensus 145 -----------------------~~~~~~eD~~l~~rl~~~G~~i~~~~~~--~~~~~~~~~~~~~~~q~~rw~~~ 195 (196)
T cd02520 145 -----------------------FADYLAEDYFLGKLIWRLGYRVVLSPYV--VMQPLGSTSLASFWRRQLRWSRT 195 (196)
T ss_pred -----------------------HhHHHHHHHHHHHHHHHcCCeEEEcchh--eeccCCcccHHHHHHHHHHHhcc
Confidence 0134689999999999999999999543 44899999999999999999874
No 32
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.77 E-value=1.2e-17 Score=175.14 Aligned_cols=58 Identities=26% Similarity=0.169 Sum_probs=51.6
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCC
Q 001413 535 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 601 (1082)
Q Consensus 535 h~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid 601 (1082)
..|++|+|.+++. +.++||+++|+|.+ +.+++|++++..|.|| +++.|+..+.+.+.+
T Consensus 63 ~g~~~a~n~g~~~----a~~d~v~~lD~D~~-~~~~~l~~l~~~~~~~----~v~~v~~~~~~~~~~ 120 (235)
T cd06434 63 PGKRRALAEGIRH----VTTDIVVLLDSDTV-WPPNALPEMLKPFEDP----KVGGVGTNQRILRPR 120 (235)
T ss_pred CChHHHHHHHHHH----hCCCEEEEECCCce-eChhHHHHHHHhccCC----CEeEEcCceEeecCc
Confidence 3499999999986 58999999999997 7999999999988888 899999999887764
No 33
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.74 E-value=6.4e-17 Score=171.76 Aligned_cols=128 Identities=27% Similarity=0.352 Sum_probs=98.1
Q ss_pred CCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCC
Q 001413 347 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEP 426 (1082)
Q Consensus 347 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iep 426 (1082)
.....|.|.|+|||+| |+ ..+..++.|+++.+||.+++.++|+|||.++-|.+.+.
T Consensus 24 ~~~~~~~isVvip~~n---~~-~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~-------------------- 79 (251)
T cd06439 24 DPAYLPTVTIIIPAYN---EE-AVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAR-------------------- 79 (251)
T ss_pred CCCCCCEEEEEEecCC---cH-HHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHH--------------------
Confidence 3466889999999998 65 67899999999999998889999999998863222110
Q ss_pred CCchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecc
Q 001413 427 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 506 (1082)
Q Consensus 427 RaPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~ 506 (1082)
++.+ +
T Consensus 80 -------------------------------~~~~----------~---------------------------------- 84 (251)
T cd06439 80 -------------------------------EYAD----------K---------------------------------- 84 (251)
T ss_pred -------------------------------HHhh----------C----------------------------------
Confidence 0000 0
Q ss_pred cCCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 001413 507 ENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 586 (1082)
Q Consensus 507 ~~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~ 586 (1082)
++.++..+++. .|++|+|.+++. .++++|+.+|+|.+ +.+++|++.+..|.++
T Consensus 85 -------------~v~~i~~~~~~-----g~~~a~n~gi~~----a~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~---- 137 (251)
T cd06439 85 -------------GVKLLRFPERR-----GKAAALNRALAL----ATGEIVVFTDANAL-LDPDALRLLVRHFADP---- 137 (251)
T ss_pred -------------cEEEEEcCCCC-----ChHHHHHHHHHH----cCCCEEEEEccccC-cCHHHHHHHHHHhcCC----
Confidence 14444444433 499999999986 57899999999998 5799999999998877
Q ss_pred cEEEEecCccccCC
Q 001413 587 HVCYVQFPQRFDGI 600 (1082)
Q Consensus 587 ~v~~VQ~PQ~F~ni 600 (1082)
++++|+......+.
T Consensus 138 ~~~~v~~~~~~~~~ 151 (251)
T cd06439 138 SVGAVSGELVIVDG 151 (251)
T ss_pred CccEEEeEEEecCC
Confidence 68889987776544
No 34
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.74 E-value=2.2e-16 Score=181.26 Aligned_cols=134 Identities=22% Similarity=0.189 Sum_probs=93.7
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCC
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepR 427 (1082)
+...|+|.|+||++| |. ..+..++-|+++.|||. ++.|+|.|||.++-|.+-+.+
T Consensus 36 ~~~~p~VSVIIpa~N---e~-~~L~~~L~sL~~q~yp~-~~eIIVVDd~StD~T~~i~~~-------------------- 90 (384)
T TIGR03469 36 PEAWPAVVAVVPARN---EA-DVIGECVTSLLEQDYPG-KLHVILVDDHSTDGTADIARA-------------------- 90 (384)
T ss_pred CCCCCCEEEEEecCC---cH-hHHHHHHHHHHhCCCCC-ceEEEEEeCCCCCcHHHHHHH--------------------
Confidence 467899999999999 76 67889999999999995 589999999998743332111
Q ss_pred CchhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeeccc
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~ 507 (1082)
+.++ .|.
T Consensus 91 -----------------------------------------~~~~---~~~----------------------------- 97 (384)
T TIGR03469 91 -----------------------------------------AARA---YGR----------------------------- 97 (384)
T ss_pred -----------------------------------------HHHh---cCC-----------------------------
Confidence 1000 000
Q ss_pred CCCCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccC-CCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCc
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLT-NGPFLLNLDCDHYINNSKALREAMCFMMDPNLGK 586 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~t-ngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~ 586 (1082)
-+++.++..+.+|. .-..|+.|+|.+++.+.... .+|+|+.+|+|.. ++|++|++++..+.++
T Consensus 98 ----------~~~i~vi~~~~~~~-g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~-~~p~~l~~lv~~~~~~---- 161 (384)
T TIGR03469 98 ----------GDRLTVVSGQPLPP-GWSGKLWAVSQGIAAARTLAPPADYLLLTDADIA-HGPDNLARLVARARAE---- 161 (384)
T ss_pred ----------CCcEEEecCCCCCC-CCcchHHHHHHHHHHHhccCCCCCEEEEECCCCC-CChhHHHHHHHHHHhC----
Confidence 01344554433332 33579999999998743111 2899999999997 7999999999998876
Q ss_pred cEEEEecCc
Q 001413 587 HVCYVQFPQ 595 (1082)
Q Consensus 587 ~v~~VQ~PQ 595 (1082)
++++|....
T Consensus 162 ~~~~vs~~~ 170 (384)
T TIGR03469 162 GLDLVSLMV 170 (384)
T ss_pred CCCEEEecc
Confidence 345565433
No 35
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.72 E-value=3.9e-14 Score=162.70 Aligned_cols=208 Identities=21% Similarity=0.351 Sum_probs=147.5
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEEEecCcccc
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQRFD 598 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~VQ~PQ~F~ 598 (1082)
++.|-.|.+ |-..||||+-..+|..| +..+|+++||||.+ -..+.+-+.+-.| .|| +.|++||--.--
T Consensus 213 ~ifYRrRr~----n~~RKaGNIaDfcrRwG--~~Y~~MlVLDADSv-Mtgd~lvrLv~~ME~~P----~aGlIQt~P~~~ 281 (736)
T COG2943 213 NIFYRRRRR----NVKRKAGNIADFCRRWG--SAYSYMLVLDADSV-MTGDCLVRLVRLMEANP----DAGLIQTSPKAS 281 (736)
T ss_pred ceeeehHhh----hhcccccCHHHHHHHhC--cccceEEEeecccc-cCchHHHHHHHHHhhCC----CCceeecchhhc
Confidence 477777766 66679999999999887 78899999999998 5888998888887 588 789999976655
Q ss_pred CCCcccccccchhhhhhhh-----------ccccccCCC--ccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCC
Q 001413 599 GIDRNDRYANRNTVFFDIN-----------LRGLDGIQG--PVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGS 665 (1082)
Q Consensus 599 nid~~Dry~n~~~vFfdi~-----------~~glDg~qg--p~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~ 665 (1082)
|.| ++|-++. --|+..||+ .-|-
T Consensus 282 gg~---------TL~AR~qQFatrvYGpl~~~GLawW~~~Es~yW----------------------------------- 317 (736)
T COG2943 282 GGD---------TLYARCQQFATRVYGPLFTAGLAWWQLGESHYW----------------------------------- 317 (736)
T ss_pred Ccc---------hHHHHHHHHHHHHhchHHhhhhHHHhccccccc-----------------------------------
Confidence 543 3333333 334444443 2344
Q ss_pred ccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCc
Q 001413 666 RKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSA 745 (1082)
Q Consensus 666 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~ 745 (1082)
|.+.++|..++.+.-|.|.-
T Consensus 318 -----------------------------------------------------------GHNAIIRt~aF~~hcgLp~L- 337 (736)
T COG2943 318 -----------------------------------------------------------GHNAIIRTKAFIEHCGLPPL- 337 (736)
T ss_pred -----------------------------------------------------------cccceeechhhHHhcCCCCC-
Confidence 44444444444444443320
Q ss_pred chhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhh
Q 001413 746 THETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWA 825 (1082)
Q Consensus 746 ~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA 825 (1082)
..+-..|. ..++.|+.-+-.|.+.||.+.-. +++...|.+.|.|+.|++++-+||+
T Consensus 338 -----------------pG~~pFgG------~ilSHDfvEAALmRRaGW~v~ia-~dL~GSyEE~PpnLlD~l~RDRRWC 393 (736)
T COG2943 338 -----------------PGRGPFGG------HILSHDFVEAALMRRAGWGVWIA-YDLDGSYEELPPNLLDELKRDRRWC 393 (736)
T ss_pred -----------------CCCCCCCc------cccchHHHHHHHHhhcCceEEEe-ccCCCchhhCCchHHHHHhhhhHhh
Confidence 01111222 35789999999999999965544 6677789999999999999999999
Q ss_pred ccchhHhhhcccccccccCCCCCcccchhhhhhhhhhhhHHHHHHHHH
Q 001413 826 LGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCT 873 (1082)
Q Consensus 826 ~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl~~~ly~l~slp~Liyll 873 (1082)
+|++|-+. ++. .++|.|..|+.++..++.++++-...++++
T Consensus 394 ~GNLqh~r-----l~~--~~GlHwvsR~h~~tGVmsYlsaPlWfl~ll 434 (736)
T COG2943 394 HGNLQHFR-----LFL--VKGLHWVSRAHFLTGVMSYLSAPLWFLFLL 434 (736)
T ss_pred hcchhhce-----eec--cCCccHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999874 332 689999999999988877766544333333
No 36
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.66 E-value=5.1e-15 Score=155.42 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=61.1
Q ss_pred chHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCCCCc
Q 001413 726 QSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPA 805 (1082)
Q Consensus 726 ~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aa 805 (1082)
....|+++++.++||+++. ....||.+++++++.+|+++.|++...
T Consensus 159 ~~~~~~~~~~~~~g~~~~~--------------------------------~~~~eD~~l~~r~~~~G~~~~~~~~~~-- 204 (249)
T cd02525 159 HHGAYRREVFEKVGGFDES--------------------------------LVRNEDAELNYRLRKAGYKIWLSPDIR-- 204 (249)
T ss_pred ccceEEHHHHHHhCCCCcc--------------------------------cCccchhHHHHHHHHcCcEEEEcCCeE--
Confidence 3345677778888987651 134799999999999999999995433
Q ss_pred ccccCCCCHHHHHHHHHHhhccchhHhhh
Q 001413 806 FKGSAPINLSDRLNQVLRWALGSVEILFS 834 (1082)
Q Consensus 806 f~G~aP~tl~~~lkQR~RWA~G~lQIlls 834 (1082)
..-..+.+++++++|+.||+.|..|.+..
T Consensus 205 ~~~~~~~s~~~~~~~~~r~~~~~~~~~~~ 233 (249)
T cd02525 205 VYYYPRSTLKKLARQYFRYGKWRARTLRK 233 (249)
T ss_pred EEEcCCCCHHHHHHHHHHHhhhhHHHHHh
Confidence 36778899999999999999999999974
No 37
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.63 E-value=2.2e-15 Score=154.60 Aligned_cols=138 Identities=26% Similarity=0.369 Sum_probs=101.6
Q ss_pred EEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccchhhhhhhhc----cccccCCC-cccc
Q 001413 556 FLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRNTVFFDINL----RGLDGIQG-PVYV 630 (1082)
Q Consensus 556 ~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~~vFfdi~~----~glDg~qg-p~yv 630 (1082)
+|+++|+|.. +.+++|++++.+|.|| +++.||+|..+++ .++...+.+.++|+... ...+..+. ....
T Consensus 1 ~v~~~DaDt~-~~~d~l~~~~~~~~~~----~~~~vq~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (193)
T PF13632_consen 1 YVLFLDADTR-LPPDFLERLVAALEDP----KVDAVQGPIIFRN--RGSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLS 73 (193)
T ss_pred CEEEEcCCCC-CChHHHHHHHHHHhCC----CceEEEccEEecC--CCChhheeehhhhhhhhhhhHHHHHhcCCCcccc
Confidence 6899999998 6899999999999888 8999999999873 34445555555543221 11111111 2233
Q ss_pred ccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCccccchhhhhcccCCCCchh
Q 001413 631 GTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDE 710 (1082)
Q Consensus 631 GTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (1082)
|+|.
T Consensus 74 G~~~---------------------------------------------------------------------------- 77 (193)
T PF13632_consen 74 GSGM---------------------------------------------------------------------------- 77 (193)
T ss_pred Ccce----------------------------------------------------------------------------
Confidence 4444
Q ss_pred hHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHH
Q 001413 711 KSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMH 790 (1082)
Q Consensus 711 ~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh 790 (1082)
.+++++++++||+.. ..+++||+++++++.
T Consensus 78 ------------------~~r~~~l~~vg~~~~--------------------------------~~~~~ED~~l~~~l~ 107 (193)
T PF13632_consen 78 ------------------LFRREALREVGGFDD--------------------------------PFSIGEDMDLGFRLR 107 (193)
T ss_pred ------------------eeeHHHHHHhCcccc--------------------------------cccccchHHHHHHHH
Confidence 444555567776440 468999999999999
Q ss_pred HCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccc
Q 001413 791 ARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGS 828 (1082)
Q Consensus 791 ~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~ 828 (1082)
++||++.|++.. .++..+|.|+.++++||+||+.|.
T Consensus 108 ~~G~~~~~~~~~--~~~~~~p~t~~~~~~Qr~RW~~g~ 143 (193)
T PF13632_consen 108 RAGYRIVYVPDA--IVYTEAPPTFRAFIRQRRRWARGA 143 (193)
T ss_pred HCCCEEEEeccc--ceeeeCCCCHHHHHHHHHHHHhhh
Confidence 999999999643 348999999999999999999998
No 38
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.52 E-value=9.3e-14 Score=143.68 Aligned_cols=115 Identities=17% Similarity=0.092 Sum_probs=80.6
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhc-------ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEe
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSA-------VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQ 592 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSa-------v~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ 592 (1082)
++.++.++.. + ....|++|+|++++.+. .-..+++|+++|+|.. +.|++|++++.+|.|| +++.||
T Consensus 51 ~v~~i~~~~~-~-~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~-~~~~~l~~~~~~~~~~----~v~~v~ 123 (191)
T cd06436 51 RVHLLRRHLP-N-ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR-LDPNALEAVAPYFSDP----RVAGTQ 123 (191)
T ss_pred cEEEEeccCC-c-CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC-cCHhHHHHHHHhhcCC----ceEEEe
Confidence 4666665421 1 22359999999998631 0113589999999997 7999999988899998 799999
Q ss_pred cCccccCCCccc--c-cccchhhhhhhhccccccCCCccccccccchhhhhc
Q 001413 593 FPQRFDGIDRND--R-YANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 641 (1082)
Q Consensus 593 ~PQ~F~nid~~D--r-y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 641 (1082)
.+.++.|.+.+- + +..+...++.+.+.++.......+.|+|++|||+||
T Consensus 124 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~G~~~~~r~~~l 175 (191)
T cd06436 124 SRVRMYNRHKNLLTILQDLEFFIIIAATQSLRALTGTVGLGGNGQFMRLSAL 175 (191)
T ss_pred eeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHhcCcEEECCeeEEEeHHHH
Confidence 999998865431 1 112223334455666665555557889999988887
No 39
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.42 E-value=9e-13 Score=134.72 Aligned_cols=61 Identities=18% Similarity=0.073 Sum_probs=47.0
Q ss_pred CcchhhhHHHHHhhc-ccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCC
Q 001413 535 HKKAGAMNALVRVSA-VLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGID 601 (1082)
Q Consensus 535 h~KAGalNallrvSa-v~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid 601 (1082)
..|++|+|.+++.+. .-.++++|+++|+|.. +.|++|++++..|.+. ...||......+.+
T Consensus 62 ~gk~~aln~g~~~a~~~~~~~d~v~~~DaD~~-~~p~~l~~l~~~~~~~-----~~~v~g~~~~~~~~ 123 (183)
T cd06438 62 RGKGYALDFGFRHLLNLADDPDAVVVFDADNL-VDPNALEELNARFAAG-----ARVVQAYYNSKNPD 123 (183)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCEEEEEcCCCC-CChhHHHHHHHHHhhC-----CCeeEEEEeeeCCc
Confidence 459999999998641 1247999999999998 6899999999988653 24688877666543
No 40
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.39 E-value=8e-12 Score=127.94 Aligned_cols=122 Identities=21% Similarity=0.294 Sum_probs=88.7
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchh
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~ 431 (1082)
|.|.|+||||| |.+..+.+|+.|+++.+|| .+.|+|.|||...-|.+.+.
T Consensus 1 p~vsiii~~~n---~~~~~l~~~l~sl~~q~~~--~~eiivvd~gs~d~~~~~~~------------------------- 50 (202)
T cd04184 1 PLISIVMPVYN---TPEKYLREAIESVRAQTYP--NWELCIADDASTDPEVKRVL------------------------- 50 (202)
T ss_pred CeEEEEEeccc---CcHHHHHHHHHHHHhCcCC--CeEEEEEeCCCCChHHHHHH-------------------------
Confidence 57999999998 6667889999999999998 46899999998652111110
Q ss_pred hhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCC
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~ 511 (1082)
++| ..+
T Consensus 51 -------------------------~~~----------~~~--------------------------------------- 56 (202)
T cd04184 51 -------------------------KKY----------AAQ--------------------------------------- 56 (202)
T ss_pred -------------------------HHH----------Hhc---------------------------------------
Confidence 011 000
Q ss_pred CCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEE
Q 001413 512 DAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCY 590 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~ 590 (1082)
.+++.++..+.+. .++.|+|.+++. +.++||+.+|+|.+ +.|++|.+.+-.| .+| ++++
T Consensus 57 ------~~~~~~~~~~~~~-----g~~~a~n~g~~~----a~~d~i~~ld~D~~-~~~~~l~~~~~~~~~~~----~~~~ 116 (202)
T cd04184 57 ------DPRIKVVFREENG-----GISAATNSALEL----ATGEFVALLDHDDE-LAPHALYEVVKALNEHP----DADL 116 (202)
T ss_pred ------CCCEEEEEcccCC-----CHHHHHHHHHHh----hcCCEEEEECCCCc-CChHHHHHHHHHHHhCC----CCCE
Confidence 0134555544433 479999999986 57899999999997 7999999999887 777 5667
Q ss_pred EecCccc
Q 001413 591 VQFPQRF 597 (1082)
Q Consensus 591 VQ~PQ~F 597 (1082)
|+.....
T Consensus 117 v~~~~~~ 123 (202)
T cd04184 117 IYSDEDK 123 (202)
T ss_pred EEccHHh
Confidence 7655443
No 41
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.35 E-value=2.1e-11 Score=124.97 Aligned_cols=65 Identities=18% Similarity=0.171 Sum_probs=52.1
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCccEEEEecCccccC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~-DP~~g~~v~~VQ~PQ~F~n 599 (1082)
+.|+.+++..| +++|+|.+++. +.|+||+.+|+|.+ ..|++|.+++.+|. +| ++++|.......+
T Consensus 57 i~~i~~~~n~G-----~~~a~N~g~~~----a~gd~i~~lD~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 122 (201)
T cd04195 57 LKVVPLEKNRG-----LGKALNEGLKH----CTYDWVARMDTDDI-SLPDRFEKQLDFIEKNP----EIDIVGGGVLEFD 122 (201)
T ss_pred eEEEEcCcccc-----HHHHHHHHHHh----cCCCEEEEeCCccc-cCcHHHHHHHHHHHhCC----CeEEEcccEEEEC
Confidence 56666665444 89999999986 68999999999997 78999999999884 56 6788887665443
No 42
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=99.21 E-value=5.5e-11 Score=123.35 Aligned_cols=153 Identities=25% Similarity=0.331 Sum_probs=109.2
Q ss_pred cCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCcccccccch-hh
Q 001413 534 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDRNDRYANRN-TV 612 (1082)
Q Consensus 534 hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~~Dry~n~~-~v 612 (1082)
-+.|..||-++++. . ...++|+++|+|+. .+|++|++.+.-|.|| ++++|..+.++.+.+. +.... ..
T Consensus 15 ~N~Kv~nL~~~~~~-~--a~~d~~~~~DsDi~-v~p~~L~~lv~~l~~p----~vglVt~~~~~~~~~~---~~~~l~~~ 83 (175)
T PF13506_consen 15 CNPKVNNLAQGLEA-G--AKYDYLVISDSDIR-VPPDYLRELVAPLADP----GVGLVTGLPRGVPARG---FWSRLEAA 83 (175)
T ss_pred CChHHHHHHHHHHh-h--CCCCEEEEECCCee-ECHHHHHHHHHHHhCC----CCcEEEecccccCCcC---HHHHHHHH
Confidence 47799999999985 2 68999999999998 5899999999999999 7999988777555432 11111 11
Q ss_pred hhhhh---ccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCC
Q 001413 613 FFDIN---LRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPT 689 (1082)
Q Consensus 613 Ffdi~---~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1082)
|+... +..+. ..++.
T Consensus 84 ~~~~~~~~~~a~~--~~~~~------------------------------------------------------------ 101 (175)
T PF13506_consen 84 FFNFLPGVLQALG--GAPFA------------------------------------------------------------ 101 (175)
T ss_pred HHhHHHHHHHHhc--CCCce------------------------------------------------------------
Confidence 11000 00000 01111
Q ss_pred CccccchhhhhcccCCCCchhhHHhhhHHHHHHhccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccc
Q 001413 690 VPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWG 769 (1082)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WG 769 (1082)
+|.+-.||+++|+++||+..
T Consensus 102 ----------------------------------~G~~m~~rr~~L~~~GG~~~-------------------------- 121 (175)
T PF13506_consen 102 ----------------------------------WGGSMAFRREALEEIGGFEA-------------------------- 121 (175)
T ss_pred ----------------------------------ecceeeeEHHHHHHcccHHH--------------------------
Confidence 35566777777888898643
Q ss_pred cccccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCC----CCHHHHHHHHHHhhc
Q 001413 770 SEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP----INLSDRLNQVLRWAL 826 (1082)
Q Consensus 770 kevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP----~tl~~~lkQR~RWA~ 826 (1082)
| .+.++||+.+|-+++.+||++++.+.. +.....| .++.++++++.||++
T Consensus 122 ----l-~~~ladD~~l~~~~~~~G~~v~~~~~~--v~~~~~~~~~~~s~~~~~~r~~RW~r 175 (175)
T PF13506_consen 122 ----L-ADYLADDYALGRRLRARGYRVVLSPYP--VVQTSVPRTLEDSFRDFFRRQLRWAR 175 (175)
T ss_pred ----H-hhhhhHHHHHHHHHHHCCCeEEEcchh--eeecccCccccccHHHHHHHHHhhcC
Confidence 0 157999999999999999999999532 2255666 489999999999985
No 43
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.19 E-value=4.9e-10 Score=113.14 Aligned_cols=55 Identities=22% Similarity=0.125 Sum_probs=43.3
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCccEEEEecCccccC
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am-cff~DP~~g~~v~~VQ~PQ~F~n 599 (1082)
.+++|+|.+++. ..++||+.+|+|.+ ..++.+.+.+ .+..+| ++.+|.....+.+
T Consensus 62 g~~~a~n~~~~~----a~~~~v~~ld~D~~-~~~~~~~~~~~~~~~~~----~~~~v~g~~~~~~ 117 (202)
T cd06433 62 GIYDAMNKGIAL----ATGDIIGFLNSDDT-LLPGALLAVVAAFAEHP----EVDVVYGDVLLVD 117 (202)
T ss_pred CHHHHHHHHHHH----cCCCEEEEeCCCcc-cCchHHHHHHHHHHhCC----CccEEEeeeEEEc
Confidence 389999999986 68999999999998 6889999998 455666 5666766655443
No 44
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=99.16 E-value=3.8e-09 Score=125.79 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=45.9
Q ss_pred cccchHHHHHHHHHC--CCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccchhHh
Q 001413 778 SVTEDILTGFKMHAR--GWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSVEIL 832 (1082)
Q Consensus 778 sVTEDi~Tg~rLh~~--GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~lQIl 832 (1082)
.+.||-.++..|.++ |||..|+..+.+ +..+|++++.+++||+||..|++--+
T Consensus 324 ~lGEDR~LttLlLk~~~~~k~~y~~~A~a--~T~aP~t~~vflsQRRRWinSTi~Nl 378 (527)
T PF03142_consen 324 DLGEDRWLTTLLLKQFPGYKTEYVPSAVA--YTDAPETFSVFLSQRRRWINSTIHNL 378 (527)
T ss_pred hcchhHHHHHHHHhhCCCceEEEcccccc--cccCCccHHHHHHHhhhccchhHhhH
Confidence 578999988777776 899999976554 89999999999999999999998544
No 45
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=99.13 E-value=2.4e-09 Score=118.44 Aligned_cols=110 Identities=22% Similarity=0.169 Sum_probs=83.0
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCchhhhhc
Q 001413 356 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEWYFAQ 435 (1082)
Q Consensus 356 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaPe~yFs~ 435 (1082)
|+|||+| |++..+.+||.|+++..||.....|+|.|||.+.-|.+.+.+
T Consensus 2 IIIp~~N---~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~---------------------------- 50 (299)
T cd02510 2 VIIIFHN---EALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLE---------------------------- 50 (299)
T ss_pred EEEEEec---CcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHH----------------------------
Confidence 7999999 888999999999999999866678999999988643332111
Q ss_pred ccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCCCCCCCC
Q 001413 436 KIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGLDAEG 515 (1082)
Q Consensus 436 ~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g~~d~~~ 515 (1082)
+.. .
T Consensus 51 -------------------------~~~--------~------------------------------------------- 54 (299)
T cd02510 51 -------------------------EYY--------K------------------------------------------- 54 (299)
T ss_pred -------------------------HHH--------h-------------------------------------------
Confidence 000 0
Q ss_pred CCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CC
Q 001413 516 NELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 582 (1082)
Q Consensus 516 ~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~-DP 582 (1082)
...|++.++..+++- .++.|.|.+++. +.|+||+.||+|.+ +.+++|.+.+-.+. +|
T Consensus 55 ~~~~~v~vi~~~~n~-----G~~~a~N~g~~~----A~gd~i~fLD~D~~-~~~~wL~~ll~~l~~~~ 112 (299)
T cd02510 55 KYLPKVKVLRLKKRE-----GLIRARIAGARA----ATGDVLVFLDSHCE-VNVGWLEPLLARIAENR 112 (299)
T ss_pred hcCCcEEEEEcCCCC-----CHHHHHHHHHHH----ccCCEEEEEeCCcc-cCccHHHHHHHHHHhCC
Confidence 011346666655433 488999999996 68999999999998 59999999998775 44
No 46
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.12 E-value=1.2e-09 Score=112.38 Aligned_cols=65 Identities=14% Similarity=0.169 Sum_probs=50.1
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHh-hcCCCCCccEEEEecCccccC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCF-MMDPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcf-f~DP~~g~~v~~VQ~PQ~F~n 599 (1082)
+.++..+++. .+++|+|.+++. ++|+||+++|+|-+ ..|+.|.+.+-. +.+| ..+++.....+.+
T Consensus 56 ~~~~~~~~~~-----G~~~~~n~g~~~----~~g~~v~~ld~Dd~-~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~ 121 (214)
T cd04196 56 IILIRNGKNL-----GVARNFESLLQA----ADGDYVFFCDQDDI-WLPDKLERLLKAFLKDD----KPLLVYSDLELVD 121 (214)
T ss_pred EEEEeCCCCc-----cHHHHHHHHHHh----CCCCEEEEECCCcc-cChhHHHHHHHHHhcCC----CceEEecCcEEEC
Confidence 4455555433 489999999885 68999999999997 689999999987 5666 6777887765543
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.09 E-value=3.5e-09 Score=110.03 Aligned_cols=41 Identities=22% Similarity=0.147 Sum_probs=34.7
Q ss_pred chhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001413 537 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 537 KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP 582 (1082)
|++|+|.+++. .++++|+++|.|.+ +.+++|.+.+-.+.++
T Consensus 60 ~~~a~n~g~~~----a~~~~i~~~D~D~~-~~~~~l~~l~~~~~~~ 100 (221)
T cd02522 60 RARQMNAGAAA----ARGDWLLFLHADTR-LPPDWDAAIIETLRAD 100 (221)
T ss_pred HHHHHHHHHHh----ccCCEEEEEcCCCC-CChhHHHHHHHHhhcC
Confidence 89999999885 56999999999998 6899999986666554
No 48
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.05 E-value=4.2e-09 Score=103.25 Aligned_cols=50 Identities=26% Similarity=0.223 Sum_probs=40.9
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEEEecC
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFP 594 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~VQ~P 594 (1082)
.+++|+|.+++. .++++|+.+|+|.+ +.++++.+.+-.+ .+| ++++|+..
T Consensus 61 g~~~a~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~~~~~ 111 (166)
T cd04186 61 GFGAGNNQGIRE----AKGDYVLLLNPDTV-VEPGALLELLDAAEQDP----DVGIVGPK 111 (166)
T ss_pred ChHHHhhHHHhh----CCCCEEEEECCCcE-ECccHHHHHHHHHHhCC----CceEEEcc
Confidence 489999999996 48999999999998 6899999998755 444 66666655
No 49
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.04 E-value=6.7e-09 Score=104.68 Aligned_cols=41 Identities=20% Similarity=0.391 Sum_probs=36.6
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP 582 (1082)
.|++|+|.+++. ++|+||+.+|+|-. +.+++|.+.+-++ ++
T Consensus 66 ~~~~~~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~~~~~~-~~ 106 (182)
T cd06420 66 RKAKIRNKAIAA----AKGDYLIFIDGDCI-PHPDFIADHIELA-EP 106 (182)
T ss_pred hHHHHHHHHHHH----hcCCEEEEEcCCcc-cCHHHHHHHHHHh-CC
Confidence 589999999986 68999999999997 7999999999877 54
No 50
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=99.00 E-value=1.9e-10 Score=95.33 Aligned_cols=48 Identities=31% Similarity=0.941 Sum_probs=30.4
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhc
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 73 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Yk 73 (1082)
|.+|.+++ +++|..|.+| +|+|.|||.||...++++++.||.||++|+
T Consensus 1 cp~C~e~~--d~~d~~~~PC-~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEEL--DETDKDFYPC-ECGFQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B----CCCTT--SS-TTS----HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCccccc--ccCCCccccC-cCCCcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 67899997 8889999999 999999999999999999999999999996
No 51
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=98.98 E-value=6.2e-09 Score=100.89 Aligned_cols=64 Identities=34% Similarity=0.459 Sum_probs=48.3
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH-HhhcCCCCCccEEEEecCcccc
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM-CFMMDPNLGKHVCYVQFPQRFD 598 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am-cff~DP~~g~~v~~VQ~PQ~F~ 598 (1082)
++++.+++..| |+.|+|.+++. .++++|+.+|+|.+ ..+++|.+.+ .++.++ +++.|.......
T Consensus 55 ~~~~~~~~~~g-----~~~~~n~~~~~----~~~~~i~~~D~D~~-~~~~~l~~~~~~~~~~~----~~~~v~~~~~~~ 119 (180)
T cd06423 55 VLVVRDKENGG-----KAGALNAGLRH----AKGDIVVVLDADTI-LEPDALKRLVVPFFADP----KVGAVQGRVRVR 119 (180)
T ss_pred EEEEEecccCC-----chHHHHHHHHh----cCCCEEEEECCCCC-cChHHHHHHHHHhccCC----CeeeEeeeEEEe
Confidence 45555555444 99999999997 48999999999998 5899999994 555666 566666554433
No 52
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=98.97 E-value=1.9e-08 Score=107.93 Aligned_cols=60 Identities=17% Similarity=0.144 Sum_probs=46.2
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 594 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~P 594 (1082)
+.++.+++..| |++|+|++++. +.|+||+.+|+|.. .+|++|.+.+-.+.++ +..+|...
T Consensus 70 v~~~~~~~n~G-----~~~a~n~g~~~----a~g~~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 129 (243)
T PLN02726 70 ILLRPRPGKLG-----LGTAYIHGLKH----ASGDFVVIMDADLS-HHPKYLPSFIKKQRET----GADIVTGT 129 (243)
T ss_pred EEEEecCCCCC-----HHHHHHHHHHH----cCCCEEEEEcCCCC-CCHHHHHHHHHHHHhc----CCcEEEEc
Confidence 55555554333 89999999986 68999999999997 7999999999888665 34555543
No 53
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=98.94 E-value=7.5e-09 Score=108.92 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=38.6
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 576 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am 576 (1082)
+.++..++..| +|+|+|.+++.+.- .+++||+.+|+|.+ .+|++|.+++
T Consensus 49 i~~i~~~~n~G-----~~~a~N~g~~~a~~-~~~d~v~~lD~D~~-~~~~~l~~l~ 97 (237)
T cd02526 49 IELIHLGENLG-----IAKALNIGIKAALE-NGADYVLLFDQDSV-PPPDMVEKLL 97 (237)
T ss_pred EEEEECCCcee-----hHHhhhHHHHHHHh-CCCCEEEEECCCCC-cCHhHHHHHH
Confidence 66676665444 99999999986321 25699999999998 6899999985
No 54
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=98.93 E-value=1.9e-08 Score=105.45 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=35.2
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhh
Q 001413 356 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT 401 (1082)
Q Consensus 356 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt 401 (1082)
|+||+|| + ...+..|+-|+++.+|| +.+.++|.|||...-|
T Consensus 1 ViIp~yn---~-~~~l~~~l~sl~~q~~~-~~~eiiVvDd~S~d~t 41 (219)
T cd06913 1 IILPVHN---G-EQWLDECLESVLQQDFE-GTLELSVFNDASTDKS 41 (219)
T ss_pred CEEeecC---c-HHHHHHHHHHHHhCCCC-CCEEEEEEeCCCCccH
Confidence 6899998 5 47999999999999999 4689999999987643
No 55
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=98.90 E-value=2.3e-09 Score=104.21 Aligned_cols=110 Identities=16% Similarity=0.149 Sum_probs=75.3
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~n 599 (1082)
++.|+.+++ +. .+++|+|.+++. ..++||+.+|+|.+ ..+++|.+.+.++.++. ..+.+...+....+
T Consensus 54 ~i~~i~~~~----n~-g~~~~~n~~~~~----a~~~~i~~ld~D~~-~~~~~l~~l~~~~~~~~--~~~~~~~~~~~~~~ 121 (169)
T PF00535_consen 54 NIRYIRNPE----NL-GFSAARNRGIKH----AKGEYILFLDDDDI-ISPDWLEELVEALEKNP--PDVVIGSVIYIDDD 121 (169)
T ss_dssp TEEEEEHCC----CS-HHHHHHHHHHHH------SSEEEEEETTEE-E-TTHHHHHHHHHHHCT--TEEEEEEEEEEECT
T ss_pred ccccccccc----cc-cccccccccccc----cceeEEEEeCCCce-EcHHHHHHHHHHHHhCC--CcEEEEEEEEecCC
Confidence 588999987 33 699999999997 68899999999998 57789999999998741 13444444433333
Q ss_pred CCcccccc--cchhhhhhhhccccccCCCccccccccchhhhhc
Q 001413 600 IDRNDRYA--NRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTAL 641 (1082)
Q Consensus 600 id~~Dry~--n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~AL 641 (1082)
........ .....++............+.++|.++++||+++
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~ 165 (169)
T PF00535_consen 122 NRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVF 165 (169)
T ss_dssp TETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHH
T ss_pred ccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHH
Confidence 22222111 1223444445556667778999999999999988
No 56
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=98.90 E-value=3.4e-08 Score=102.88 Aligned_cols=60 Identities=13% Similarity=0.140 Sum_probs=47.0
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFP 594 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~P 594 (1082)
+.++..+++.| |++|+|.+++. +.|+||+.+|+|.. .+|++|...+..+.++ +...|..+
T Consensus 55 i~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~ 114 (224)
T cd06442 55 VRLIVRPGKRG-----LGSAYIEGFKA----ARGDVIVVMDADLS-HPPEYIPELLEAQLEG----GADLVIGS 114 (224)
T ss_pred eEEEecCCCCC-----hHHHHHHHHHH----cCCCEEEEEECCCC-CCHHHHHHHHHHHhcC----CCCEEEEe
Confidence 45555555444 89999999986 57899999999987 6999999999987766 34555554
No 57
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=98.90 E-value=2.4e-08 Score=102.92 Aligned_cols=65 Identities=17% Similarity=0.223 Sum_probs=47.0
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccc
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 597 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F 597 (1082)
+.|+.-++.. ..+.++|.+++.+- ...++|++.+|+|.+ +.+++|++.+-.+.+| +++.| +|.++
T Consensus 53 i~~~~~~~n~-----g~~~~~n~~~~~a~-~~~~d~v~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~~-~~~~~ 117 (202)
T cd04185 53 IVYLRLPENL-----GGAGGFYEGVRRAY-ELGYDWIWLMDDDAI-PDPDALEKLLAYADKD----NPQFL-APLVL 117 (202)
T ss_pred eEEEECcccc-----chhhHHHHHHHHHh-ccCCCEEEEeCCCCC-cChHHHHHHHHHHhcC----CceEe-cceeE
Confidence 4555555433 37888998887542 457999999999997 6899999999888777 56655 34343
No 58
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=98.65 E-value=3.3e-07 Score=95.69 Aligned_cols=61 Identities=18% Similarity=0.132 Sum_probs=45.8
Q ss_pred EEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCcc
Q 001413 522 VYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQR 596 (1082)
Q Consensus 522 vYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~ 596 (1082)
.++..++..| |++|+|.+++. +.|+||+.+|+|.. ..+++|.+.+..+.++ ....|.....
T Consensus 60 ~~i~~~~n~G-----~~~a~~~g~~~----a~gd~i~~ld~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~r~ 120 (211)
T cd04188 60 RVLTLPKNRG-----KGGAVRAGMLA----ARGDYILFADADLA-TPFEELEKLEEALKTS----GYDIAIGSRA 120 (211)
T ss_pred EEEEcccCCC-----cHHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEee
Confidence 4555444334 89999999996 57899999999997 7999999999887654 2344554433
No 59
>PRK10073 putative glycosyl transferase; Provisional
Probab=98.60 E-value=8.2e-07 Score=100.82 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=82.4
Q ss_pred CCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCCCCCCc
Q 001413 350 QLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAP 429 (1082)
Q Consensus 350 ~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~iepRaP 429 (1082)
..|.|.|+||+|| ++ ..+..++-|+++..|+ .+.|+|.|||.+.-|.+-+
T Consensus 4 ~~p~vSVIIP~yN---~~-~~L~~~l~Sl~~Qt~~--~~EIIiVdDgStD~t~~i~------------------------ 53 (328)
T PRK10073 4 STPKLSIIIPLYN---AG-KDFRAFMESLIAQTWT--ALEIIIVNDGSTDNSVEIA------------------------ 53 (328)
T ss_pred CCCeEEEEEeccC---CH-HHHHHHHHHHHhCCCC--CeEEEEEeCCCCccHHHHH------------------------
Confidence 3578999999998 54 6889999999999997 5789999999876322211
Q ss_pred hhhhhcccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccccccCCCCCCCCCCCCCccceeeecccCC
Q 001413 430 EWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENG 509 (1082)
Q Consensus 430 e~yFs~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~rdhp~iiqv~l~~~g 509 (1082)
++|.+
T Consensus 54 ---------------------------~~~~~------------------------------------------------ 58 (328)
T PRK10073 54 ---------------------------KHYAE------------------------------------------------ 58 (328)
T ss_pred ---------------------------HHHHh------------------------------------------------
Confidence 11110
Q ss_pred CCCCCCCCCCcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001413 510 GLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 510 ~~d~~~~~lP~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP 582 (1082)
+.|++.++..+ . ...++|.|.++.. ..|+||+.+|+|-+ ..|+.|.+.+..+.++
T Consensus 59 -------~~~~i~vi~~~-n-----~G~~~arN~gl~~----a~g~yi~flD~DD~-~~p~~l~~l~~~~~~~ 113 (328)
T PRK10073 59 -------NYPHVRLLHQA-N-----AGVSVARNTGLAV----ATGKYVAFPDADDV-VYPTMYETLMTMALED 113 (328)
T ss_pred -------hCCCEEEEECC-C-----CChHHHHHHHHHh----CCCCEEEEECCCCc-cChhHHHHHHHHHHhC
Confidence 01245555432 2 2489999999986 69999999999998 5899999999877654
No 60
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=98.58 E-value=3.3e-07 Score=92.53 Aligned_cols=65 Identities=14% Similarity=0.198 Sum_probs=50.9
Q ss_pred EEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001413 521 LVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 521 lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~n 599 (1082)
+.++..+++.| |++|+|.+++. +.|++|+.+|+|-. ..|++|.+.+-.+..+ +..+|+.+....+
T Consensus 56 ~~~~~~~~n~G-----~~~a~n~g~~~----a~gd~i~~lD~D~~-~~~~~l~~l~~~~~~~----~~~~v~g~~~~~~ 120 (185)
T cd04179 56 VRVIRLSRNFG-----KGAAVRAGFKA----ARGDIVVTMDADLQ-HPPEDIPKLLEKLLEG----GADVVIGSRFVRG 120 (185)
T ss_pred eEEEEccCCCC-----ccHHHHHHHHH----hcCCEEEEEeCCCC-CCHHHHHHHHHHHhcc----CCcEEEEEeecCC
Confidence 45666666555 99999999986 67899999999997 6999999999886654 4567777765554
No 61
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=98.55 E-value=1.8e-06 Score=94.67 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=49.8
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccc
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRF 597 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F 597 (1082)
.+.|+.-++.-| .|||+|.+++.. .-.+++||+.+|.|.+ +.+++|.+.+.++..+ +.+++.|. |..+
T Consensus 46 ~i~~i~~~~N~G-----~a~a~N~Gi~~a-~~~~~d~i~~lD~D~~-~~~~~l~~l~~~~~~~--~~~~~~~~-~~~~ 113 (281)
T TIGR01556 46 KIALIHLGDNQG-----IAGAQNQGLDAS-FRRGVQGVLLLDQDSR-PGNAFLAAQWKLLSAE--NGQACALG-PRFF 113 (281)
T ss_pred CeEEEECCCCcc-----hHHHHHHHHHHH-HHCCCCEEEEECCCCC-CCHHHHHHHHHHHHhc--CCceEEEC-CeEE
Confidence 466776655444 799999999863 1237899999999998 6799999999887542 12677776 4433
No 62
>PRK10018 putative glycosyl transferase; Provisional
Probab=98.53 E-value=2.9e-06 Score=94.56 Aligned_cols=52 Identities=15% Similarity=0.328 Sum_probs=42.9
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 581 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~D 581 (1082)
++.|+..++.-| ++.|+|.++.. ++|+||+.+|+|-+ ..|+.|.+.+-++..
T Consensus 61 ri~~i~~~~n~G-----~~~a~N~gi~~----a~g~~I~~lDaDD~-~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 61 RITYIHNDINSG-----ACAVRNQAIML----AQGEYITGIDDDDE-WTPNRLSVFLAHKQQ 112 (279)
T ss_pred CEEEEECCCCCC-----HHHHHHHHHHH----cCCCEEEEECCCCC-CCccHHHHHHHHHHh
Confidence 577887665444 89999999986 69999999999998 589999998887643
No 63
>PRK10063 putative glycosyl transferase; Provisional
Probab=98.44 E-value=6.8e-06 Score=89.78 Aligned_cols=47 Identities=15% Similarity=0.028 Sum_probs=36.1
Q ss_pred cceeEEEecCCCCCCCHHHHHHHHHHHHcC-CCCCCCcEEEEecCCCchhhH
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAV-DYPVDKVSCYVSDDGAAMLTF 402 (1082)
Q Consensus 352 p~VDvfV~T~dp~kEpp~v~~nTvls~la~-DYP~~kl~~yvsDDG~~~ltf 402 (1082)
|.|.|+||||| |. ..+..|+.|++++ ..+...+.++|.|||.++-|.
T Consensus 1 ~~vSVIi~~yN---~~-~~l~~~l~sl~~~~~~~~~~~EiIVvDdgStD~t~ 48 (248)
T PRK10063 1 MLLSVITVAFR---NL-EGIVKTHASLRHLAQDPGISFEWIVVDGGSNDGTR 48 (248)
T ss_pred CeEEEEEEeCC---CH-HHHHHHHHHHHHHHhCCCCCEEEEEEECcCcccHH
Confidence 56899999998 64 5789999999864 233347899999999887433
No 64
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=98.40 E-value=5.6e-06 Score=78.29 Aligned_cols=51 Identities=27% Similarity=0.337 Sum_probs=41.1
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHH-hhcCCCCCccEEEEecC
Q 001413 535 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMC-FMMDPNLGKHVCYVQFP 594 (1082)
Q Consensus 535 h~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amc-ff~DP~~g~~v~~VQ~P 594 (1082)
..|++++|.++.. .++++++++|+|.+ ..++++...+- +..++ +...|+.+
T Consensus 63 ~g~~~~~~~~~~~----~~~d~v~~~d~D~~-~~~~~~~~~~~~~~~~~----~~~~v~~~ 114 (156)
T cd00761 63 QGLAAARNAGLKA----ARGEYILFLDADDL-LLPDWLERLVAELLADP----EADAVGGP 114 (156)
T ss_pred CChHHHHHHHHHH----hcCCEEEEECCCCc-cCccHHHHHHHHHhcCC----CceEEecc
Confidence 3499999999986 47999999999997 68889988744 45565 67778776
No 65
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=98.34 E-value=3.5e-06 Score=85.57 Aligned_cols=105 Identities=16% Similarity=0.226 Sum_probs=63.5
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccC
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDG 599 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~n 599 (1082)
++.++..++.. .|++|+|++++. +.+++|+.+|+|.. ..+++|.+.+.. +++. .++.+..-... +
T Consensus 56 ~i~~i~~~~n~-----G~~~a~n~g~~~----a~~d~i~~~D~D~~-~~~~~l~~l~~~-~~~~--~~~v~g~~~~~--~ 120 (181)
T cd04187 56 RVKVIRLSRNF-----GQQAALLAGLDH----ARGDAVITMDADLQ-DPPELIPEMLAK-WEEG--YDVVYGVRKNR--K 120 (181)
T ss_pred CEEEEEecCCC-----CcHHHHHHHHHh----cCCCEEEEEeCCCC-CCHHHHHHHHHH-HhCC--CcEEEEEecCC--c
Confidence 35566555433 499999999986 67899999999997 689999999987 4432 24444332222 1
Q ss_pred CCcccccccchhhhhhhhccccccCCCccccccccchhhhhcc
Q 001413 600 IDRNDRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALY 642 (1082)
Q Consensus 600 id~~Dry~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALy 642 (1082)
.....++.+. .++. ....+.+..-+...|+..++||+++-
T Consensus 121 ~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~ 160 (181)
T cd04187 121 ESWLKRLTSK--LFYR-LINKLSGVDIPDNGGDFRLMDRKVVD 160 (181)
T ss_pred chHHHHHHHH--HHHH-HHHHHcCCCCCCCCCCEEEEcHHHHH
Confidence 1111111111 1111 11222334445666777899999985
No 66
>KOG2571 consensus Chitin synthase/hyaluronan synthase (glycosyltransferases) [Cell wall/membrane/envelope biogenesis]
Probab=98.34 E-value=5.6e-06 Score=102.65 Aligned_cols=50 Identities=26% Similarity=0.345 Sum_probs=45.3
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhccch
Q 001413 778 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWALGSV 829 (1082)
Q Consensus 778 sVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~G~l 829 (1082)
+..||-.+..++..+||+.-|+....+ ...+|+++..++.||+||..|.+
T Consensus 549 ~~geDR~L~~~llskgy~l~Y~a~s~a--~t~~Pe~~~efl~QrrRW~~s~f 598 (862)
T KOG2571|consen 549 SLGEDRWLCTLLLSKGYRLKYVAASDA--ETEAPESFLEFLNQRRRWLNSIF 598 (862)
T ss_pred ccchhHHHHHHHHhccceeeeeccccc--cccCcHhHHHHHHHhhhhcccch
Confidence 489999999999999999999976543 89999999999999999999943
No 67
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=98.29 E-value=2e-05 Score=88.22 Aligned_cols=69 Identities=25% Similarity=0.323 Sum_probs=52.1
Q ss_pred CcEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCC-EEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEEEecCcc
Q 001413 519 PRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGP-FLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYVQFPQR 596 (1082)
Q Consensus 519 P~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp-~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~VQ~PQ~ 596 (1082)
|.+.|+.-.+.-|+ ||+.|.+++.. +.++. |++.|+-|.+ .++++|.+.+-.+ .+| .++.|+.-.+
T Consensus 56 ~~v~~i~~~~NlG~-----agg~n~g~~~a--~~~~~~~~l~LN~D~~-~~~~~l~~ll~~~~~~~----~~~~~~~~i~ 123 (305)
T COG1216 56 PNVRLIENGENLGF-----AGGFNRGIKYA--LAKGDDYVLLLNPDTV-VEPDLLEELLKAAEEDP----AAGVVGPLIR 123 (305)
T ss_pred CcEEEEEcCCCccc-----hhhhhHHHHHH--hcCCCcEEEEEcCCee-eChhHHHHHHHHHHhCC----CCeEeeeeEe
Confidence 45677777666775 89999888763 35544 9999999975 7999999999766 455 6888887766
Q ss_pred ccC
Q 001413 597 FDG 599 (1082)
Q Consensus 597 F~n 599 (1082)
.++
T Consensus 124 ~~~ 126 (305)
T COG1216 124 NYD 126 (305)
T ss_pred cCC
Confidence 544
No 68
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=98.26 E-value=2.6e-05 Score=86.55 Aligned_cols=61 Identities=15% Similarity=0.257 Sum_probs=45.4
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEEecCccccCCCc
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYVQFPQRFDGIDR 602 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~VQ~PQ~F~nid~ 602 (1082)
.+|.|.|.++.. +++++|+.+|+|.+ +.|++|.+++-+.+.=. ...-+++-.|..|.+.+.
T Consensus 75 ~~a~arN~g~~~----A~~d~l~flD~D~i-~~~~~i~~~~~~~~~l~-~~~~~~~~~p~~yl~~~~ 135 (281)
T PF10111_consen 75 SRAKARNIGAKY----ARGDYLIFLDADCI-PSPDFIEKLLNHVKKLD-KNPNAFLVYPCLYLSEEG 135 (281)
T ss_pred CHHHHHHHHHHH----cCCCEEEEEcCCee-eCHHHHHHHHHHHHHHh-cCCCceEEEeeeeccchh
Confidence 699999999986 69999999999997 79999999999321100 013456667777775543
No 69
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=98.18 E-value=3.6e-05 Score=87.87 Aligned_cols=41 Identities=20% Similarity=0.323 Sum_probs=35.4
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 581 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~D 581 (1082)
.|++|+|++++. +.|++|+++|+|.. .+++.+.+.+-.+.+
T Consensus 149 G~~~A~~~Gi~~----a~gd~I~~~DaD~~-~~~~~l~~l~~~l~~ 189 (333)
T PTZ00260 149 GKGGAVRIGMLA----SRGKYILMVDADGA-TDIDDFDKLEDIMLK 189 (333)
T ss_pred ChHHHHHHHHHH----ccCCEEEEEeCCCC-CCHHHHHHHHHHHHH
Confidence 499999999986 58999999999997 688998888877653
No 70
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=98.04 E-value=2.7e-05 Score=87.95 Aligned_cols=50 Identities=20% Similarity=0.213 Sum_probs=42.2
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc-CCCCCccEEEEec
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGKHVCYVQF 593 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~-DP~~g~~v~~VQ~ 593 (1082)
.|++|+|.+++. ++|++|+.+|+|....+|++|.+.+..+. || ++.+|..
T Consensus 102 Gkg~A~~~g~~~----a~gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~----~~~~V~g 152 (306)
T PRK13915 102 GKGEALWRSLAA----TTGDIVVFVDADLINFDPMFVPGLLGPLLTDP----GVHLVKA 152 (306)
T ss_pred CHHHHHHHHHHh----cCCCEEEEEeCccccCCHHHHHHHHHHHHhCC----CceEEEE
Confidence 499999999986 68999999999985368999999998775 77 5777764
No 71
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=97.35 E-value=0.0016 Score=74.21 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=35.5
Q ss_pred cchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhc
Q 001413 536 KKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM 580 (1082)
Q Consensus 536 ~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~ 580 (1082)
.|++|+|++++. +.|++++.+|||.. .+|+.+.+.+-.+.
T Consensus 77 G~~~A~~~G~~~----A~gd~vv~~DaD~q-~~p~~i~~l~~~~~ 116 (325)
T PRK10714 77 GQHSAIMAGFSH----VTGDLIITLDADLQ-NPPEEIPRLVAKAD 116 (325)
T ss_pred CHHHHHHHHHHh----CCCCEEEEECCCCC-CCHHHHHHHHHHHH
Confidence 489999999986 68999999999997 79999999888764
No 72
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=97.32 E-value=0.0049 Score=70.71 Aligned_cols=158 Identities=26% Similarity=0.399 Sum_probs=111.0
Q ss_pred cCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCCCCCccEEEE-ecCccccCCCcccccccchhh
Q 001413 534 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCYV-QFPQRFDGIDRNDRYANRNTV 612 (1082)
Q Consensus 534 hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP~~g~~v~~V-Q~PQ~F~nid~~Dry~n~~~v 612 (1082)
-+-|--||=-+.|. ...|||++.|.|-. -.|+.+....-=||.|+ ++|+| |+|-.++---
T Consensus 155 ~npKInN~mpgy~~----a~ydlvlisDsgI~-m~pdtildm~t~M~she---kmalvtq~py~~dr~G----------- 215 (431)
T KOG2547|consen 155 LNPKINNMMPGYRA----AKYDLVLISDSGIF-MKPDTILDMATTMMSHE---KMALVTQTPYCKDRQG----------- 215 (431)
T ss_pred cChhhhccCHHHHH----hcCCEEEEecCCee-ecCchHHHHHHhhhccc---ceeeecCCceeecccc-----------
Confidence 34577777777786 68899999999988 59999999888898876 89988 7776655221
Q ss_pred hhhhhccccccCCCccccccccchhhhhccCCCCCCCCCCCCCCCcccccCCCccccCCcCccCCCcccCCCCCCCCCcc
Q 001413 613 FFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSSLFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPI 692 (1082)
Q Consensus 613 Ffdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1082)
| |.--..+|-||. +-|-.|-|- |-.-
T Consensus 216 -f-------~atle~~~fgTs--h~r~yl~~n-------------~~~~------------------------------- 241 (431)
T KOG2547|consen 216 -F-------DATLEQVYFGTS--HPRIYLSGN-------------VLGF------------------------------- 241 (431)
T ss_pred -c-------hhhhhheeeccC--CceEEEccc-------------cccc-------------------------------
Confidence 1 111112555654 334333210 0000
Q ss_pred ccchhhhhcccCCCCchhhHHhhhHHHHHHh-ccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccc
Q 001413 693 FSLEDIEEGVEGAGFDDEKSLLMSQMSLEKR-FGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSE 771 (1082)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGke 771 (1082)
+. =|-|...|+++++|.||+...
T Consensus 242 -----------------------------~c~tgms~~mrK~~ld~~ggi~~f--------------------------- 265 (431)
T KOG2547|consen 242 -----------------------------NCSTGMSSMMRKEALDECGGISAF--------------------------- 265 (431)
T ss_pred -----------------------------cccccHHHHHHHHHHHHhccHHHH---------------------------
Confidence 01 156778899999999996541
Q ss_pred cccccccccchHHHHHHHHHCCCEEEEeCCCCCcccccCCCCHHHHHHHHHHhhc
Q 001413 772 IGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQVLRWAL 826 (1082)
Q Consensus 772 vGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP~tl~~~lkQR~RWA~ 826 (1082)
| +.+.||+..+-.+..+||++.+..-. +-...+-.+...+..|-.||..
T Consensus 266 -~---~yLaedyFaaksllSRG~ksaist~p--alQnSas~~mssf~~Ri~rwvk 314 (431)
T KOG2547|consen 266 -G---GYLAEDYFAAKSLLSRGWKSAISTHP--ALQNSASVTMSSFLDRIIRWVK 314 (431)
T ss_pred -H---HHHHHHHHHHHHHHhhhhhhhhcccc--hhhhhhhhHHHHHHHHHHHhhh
Confidence 1 48999999999999999999999643 2256677888899989899976
No 73
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=96.98 E-value=0.006 Score=65.35 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=35.7
Q ss_pred chhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcCC
Q 001413 537 KAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 537 KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~DP 582 (1082)
.+.+.|.++.. ..+++|+.+|+|.+ ..++.+.+...++.++
T Consensus 59 ~~~~~n~~~~~----a~~d~vl~lDaD~~-~~~~~~~~l~~~~~~~ 99 (229)
T cd02511 59 FGAQRNFALEL----ATNDWVLSLDADER-LTPELADEILALLATD 99 (229)
T ss_pred hHHHHHHHHHh----CCCCEEEEEeCCcC-cCHHHHHHHHHHHhCC
Confidence 78999999985 67899999999998 6999999999888654
No 74
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=96.93 E-value=0.0071 Score=58.03 Aligned_cols=44 Identities=23% Similarity=0.292 Sum_probs=39.0
Q ss_pred CcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchh
Q 001413 351 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML 400 (1082)
Q Consensus 351 lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l 400 (1082)
.|.+.|+|||+| |+ .....+|.|++...|+. ..+.|.|||.+.-
T Consensus 2 ~~~~siiip~~n---~~-~~l~~~l~s~~~q~~~~--~eiivvddgs~d~ 45 (291)
T COG0463 2 MPKVSVVIPTYN---EE-EYLPEALESLLNQTYKD--FEIIVVDDGSTDG 45 (291)
T ss_pred CccEEEEEeccc---hh-hhHHHHHHHHHhhhhcc--eEEEEEeCCCCCC
Confidence 477999999998 55 89999999999999996 5599999999873
No 75
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.65 E-value=0.00086 Score=75.15 Aligned_cols=49 Identities=31% Similarity=0.933 Sum_probs=44.1
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhh
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Y 72 (1082)
..|..|=+.+.++ ..-|.+| -|||.|||.||.--|.+=|+.||-|...|
T Consensus 15 d~cplcie~mdit--dknf~pc-~cgy~ic~fc~~~irq~lngrcpacrr~y 63 (480)
T COG5175 15 DYCPLCIEPMDIT--DKNFFPC-PCGYQICQFCYNNIRQNLNGRCPACRRKY 63 (480)
T ss_pred ccCcccccccccc--cCCcccC-CcccHHHHHHHHHHHhhccCCChHhhhhc
Confidence 4699999998776 3459999 99999999999999999999999999999
No 76
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.64 E-value=0.012 Score=66.79 Aligned_cols=62 Identities=24% Similarity=0.524 Sum_probs=53.4
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccccCCCccc
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAIL 82 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~ 82 (1082)
..+.|.+|-.+..++.+=.++|. +||-..|+.|.+---+.|...||+|++..++.+=.|.+-
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~--~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F 63 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVN--VCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLF 63 (309)
T ss_pred CCCCCCcCCCCCccCcccccccC--CCCCcccHHHHHHHhcCCCCCCCCCCCccchhhcccccc
Confidence 46799999999999988888988 999999999998877889999999999998875444433
No 77
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=94.92 E-value=0.016 Score=49.93 Aligned_cols=46 Identities=35% Similarity=0.884 Sum_probs=36.8
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCC--cchhh
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQ--CKTRY 72 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~Cpq--Ckt~Y 72 (1082)
.+.+|.+||+.+ .+|++.|.|.+|+=|.=|+||+++ +.|-- |++.+
T Consensus 4 ~~~~C~~Cg~~~---~~~dDiVvCp~CgapyHR~C~~~~-----g~C~~~~c~~~~ 51 (54)
T PF14446_consen 4 EGCKCPVCGKKF---KDGDDIVVCPECGAPYHRDCWEKA-----GGCINYSCGTGF 51 (54)
T ss_pred cCccChhhCCcc---cCCCCEEECCCCCCcccHHHHhhC-----CceEeccCCCCc
Confidence 466899999998 357889999999999999999765 34554 66655
No 78
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=94.90 E-value=0.33 Score=56.19 Aligned_cols=41 Identities=22% Similarity=0.252 Sum_probs=34.6
Q ss_pred eEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001413 355 DIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1082)
Q Consensus 355 DvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 399 (1082)
-|+|.||| -|.-+.+|+-|+++..+-.+...+||++||...
T Consensus 3 PVlv~ayN----Rp~~l~r~LesLl~~~p~~~~~~liIs~DG~~~ 43 (334)
T cd02514 3 PVLVIACN----RPDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYE 43 (334)
T ss_pred CEEEEecC----CHHHHHHHHHHHHhccccCCCceEEEEeCCCch
Confidence 47888997 369999999999998755567889999999875
No 79
>PF02364 Glucan_synthase: 1,3-beta-glucan synthase component ; InterPro: IPR003440 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This is the glycosyltransferase 48 family GT48 from CAZY, which consists of various 1,3-beta-glucan synthase components including Gls1, Gls2 and Gls3 from yeast. 1,3-beta-glucan synthase (2.4.1.34 from EC) also known as callose synthase catalyses the formation of a beta-1,3-glucan polymer that is a major component of the fungal cell wall []. The reaction catalysed is:- UDP-glucose + {1,3-beta-D-glucosyl}(N) = UDP + {1,3-beta-D-glucosyl}(N+1).; GO: 0003843 1,3-beta-D-glucan synthase activity, 0006075 1,3-beta-D-glucan biosynthetic process, 0000148 1,3-beta-D-glucan synthase complex, 0016020 membrane
Probab=91.14 E-value=2.1 Score=54.47 Aligned_cols=73 Identities=27% Similarity=0.408 Sum_probs=48.8
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCcccccCC-CCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccchhhh
Q 001413 778 SVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAP-INLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYV 856 (1082)
Q Consensus 778 sVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~G~aP-~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL~Yl 856 (1082)
.++||+..|+....||-++.++ +-..+ |..- -.+..-+.=-..-+.|+-+..++|.--. .+.+|.+..-|++.
T Consensus 409 hLsEDIfaG~n~~lRGG~i~h~-ey~qc--GKGRD~Gf~~I~~F~~KI~~G~GEQ~LSRe~yr---Lg~~ld~~R~LSfy 482 (817)
T PF02364_consen 409 HLSEDIFAGMNATLRGGRIKHC-EYIQC--GKGRDVGFNSILNFETKIASGMGEQMLSREYYR---LGTRLDFFRFLSFY 482 (817)
T ss_pred cccHHHHHHHHHHhcCCceeeh-hhhhc--ccccccCchhhhhhHhHhcCCccchhhhHHHHH---hhccCCHHHHHHHH
Confidence 7999999999999999999999 44443 3322 1233333335677899988887764222 25667776556533
No 80
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=87.91 E-value=0.45 Score=37.15 Aligned_cols=44 Identities=34% Similarity=0.804 Sum_probs=33.1
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchh
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~ 71 (1082)
.|.||.+.. .+.++ ...|+-..|..|.+.-.+.++..||.|++.
T Consensus 1 ~C~iC~~~~-----~~~~~-~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF-----REPVV-LLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh-----hCceE-ecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 488998887 22222 335899999999976666678899999875
No 81
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=87.79 E-value=3.1 Score=44.81 Aligned_cols=52 Identities=19% Similarity=0.326 Sum_probs=37.9
Q ss_pred cEEEEEcccCCCCCcCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhhcC
Q 001413 520 RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMD 581 (1082)
Q Consensus 520 ~lvYvsRekrPg~~hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff~D 581 (1082)
++.-..|.+.-|. .-|.-+++.. ..|+|+++.|||-- -.|+++-+.+-...+
T Consensus 64 ~i~l~pR~~klGL-----gtAy~hgl~~----a~g~fiviMDaDls-HhPk~ipe~i~lq~~ 115 (238)
T KOG2978|consen 64 NILLKPRTKKLGL-----GTAYIHGLKH----ATGDFIVIMDADLS-HHPKFIPEFIRLQKE 115 (238)
T ss_pred cEEEEeccCcccc-----hHHHHhhhhh----ccCCeEEEEeCccC-CCchhHHHHHHHhhc
Confidence 5777888875443 2234445554 68999999999985 899999987766654
No 82
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=86.76 E-value=0.4 Score=48.41 Aligned_cols=52 Identities=29% Similarity=0.751 Sum_probs=39.0
Q ss_pred ccccccCCCcccCCCCCccccCCCC-CCCcchhhhHHHHh--hCCCCCCCcchhhcccc
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERK--DGNQSCPQCKTRYKKHK 76 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerk--eG~q~CpqCkt~Ykr~k 76 (1082)
--|.||.|.= .-|-|.-=||| ||.||--||--=.| .-.-.||-|||-||..+
T Consensus 81 YeCnIC~etS----~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 81 YECNICKETS----AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred eeccCccccc----chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 4699998741 23446665564 99999999976666 55689999999998764
No 83
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=82.88 E-value=1.2 Score=38.31 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=33.8
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhh
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Y 72 (1082)
+|.||++-+ .+ +.+ -.||+-.||.|.+--.++ ++.||.|+.++
T Consensus 3 ~Cpi~~~~~-~~----Pv~--~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~ 45 (63)
T smart00504 3 LCPISLEVM-KD----PVI--LPSGQTYERRAIEKWLLS-HGTDPVTGQPL 45 (63)
T ss_pred CCcCCCCcC-CC----CEE--CCCCCEEeHHHHHHHHHH-CCCCCCCcCCC
Confidence 699999874 22 433 378999999999877666 67899999877
No 84
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=77.84 E-value=1.1 Score=56.12 Aligned_cols=24 Identities=25% Similarity=0.598 Sum_probs=17.2
Q ss_pred chhhhHHHHhhCCCCCCCcchhhcc
Q 001413 50 CRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 50 CrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
|.-|- .+...|..-||+|+++-..
T Consensus 30 Cp~CG-~~~~~~~~fC~~CG~~~~~ 53 (645)
T PRK14559 30 CPQCG-TEVPVDEAHCPNCGAETGT 53 (645)
T ss_pred CCCCC-CCCCcccccccccCCcccc
Confidence 44444 4467888999999998654
No 85
>KOG2977 consensus Glycosyltransferase [General function prediction only]
Probab=76.91 E-value=12 Score=42.79 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=32.0
Q ss_pred ceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCC---CcEEEEecCCCchhhHHH
Q 001413 353 AVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVD---KVSCYVSDDGAAMLTFEA 404 (1082)
Q Consensus 353 ~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~---kl~~yvsDDG~~~ltf~a 404 (1082)
..-|+||.||=.+-=|.+.-.|+-. |.-.|-.| ...+.|+|||...-|.+.
T Consensus 68 ~lsVIVpaynE~~ri~~mldeav~~-le~ry~~~~~F~~eiiVvddgs~d~T~~~ 121 (323)
T KOG2977|consen 68 YLSVIVPAYNEEGRIGAMLDEAVDY-LEKRYLSDKSFTYEIIVVDDGSTDSTVEV 121 (323)
T ss_pred eeEEEEecCCcccchHHHHHHHHHH-HHHHhccCCCCceeEEEeCCCCchhHHHH
Confidence 6789999999222224444444443 33344432 567899999999865553
No 86
>PHA02862 5L protein; Provisional
Probab=73.87 E-value=2 Score=44.23 Aligned_cols=49 Identities=27% Similarity=0.582 Sum_probs=32.0
Q ss_pred CccccccCCCcccCCCCCccccCCCC---CCCcchhhhH-HHHhhCCCCCCCcchhhcc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVC---AFPVCRPCYE-YERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC---~fpvCrpCye-yerkeG~q~CpqCkt~Ykr 74 (1082)
+.+|.||-++- +|..-+| .| -==|=+.|.+ .-...++..|+|||++|.-
T Consensus 2 ~diCWIC~~~~-----~e~~~PC-~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~I 54 (156)
T PHA02862 2 SDICWICNDVC-----DERNNFC-GCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNI 54 (156)
T ss_pred CCEEEEecCcC-----CCCcccc-cccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEE
Confidence 56899998862 3445777 34 1123345542 2245788999999999964
No 87
>PHA02929 N1R/p28-like protein; Provisional
Probab=72.81 E-value=3.8 Score=45.60 Aligned_cols=55 Identities=24% Similarity=0.530 Sum_probs=39.6
Q ss_pred cCCccccccCCCcccCC-CCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhc
Q 001413 18 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 73 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Yk 73 (1082)
.....|.||.+.+..++ ....+..=..|+-.-|+.|.. +-.+.++.||-|++++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~-~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECID-IWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHH-HHHhcCCCCCCCCCEee
Confidence 45679999999875433 112233344789999999995 44567889999998875
No 88
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=70.82 E-value=2.3 Score=34.51 Aligned_cols=43 Identities=33% Similarity=0.697 Sum_probs=33.3
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcc
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 69 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCk 69 (1082)
.|.||-+++.. ++..+... |+=-.|+.|.+-=.+. ++.||-|+
T Consensus 2 ~C~IC~~~~~~---~~~~~~l~-C~H~fh~~Ci~~~~~~-~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFED---GEKVVKLP-CGHVFHRSCIKEWLKR-NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHT---TSCEEEET-TSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred CCcCCChhhcC---CCeEEEcc-CCCeeCHHHHHHHHHh-CCcCCccC
Confidence 59999999854 67777775 9999999998654444 57999995
No 89
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=69.08 E-value=2.1 Score=37.31 Aligned_cols=48 Identities=31% Similarity=0.715 Sum_probs=35.0
Q ss_pred cCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 18 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
..-|.|-.||..-.. ..+.+ ||=-||+-|+.-||-+| ||=|++|+...
T Consensus 5 ~~~~~~~~~~~~~~~----~~~~p---CgH~I~~~~f~~~rYng---CPfC~~~~~~~ 52 (55)
T PF14447_consen 5 QPEQPCVFCGFVGTK----GTVLP---CGHLICDNCFPGERYNG---CPFCGTPFEFD 52 (55)
T ss_pred ccceeEEEccccccc----ccccc---ccceeeccccChhhccC---CCCCCCcccCC
Confidence 345667777765222 12344 59999999999999887 99999999654
No 90
>smart00659 RPOLCX RNA polymerase subunit CX. present in RNA polymerase I, II and III
Probab=66.72 E-value=3.3 Score=34.51 Aligned_cols=27 Identities=22% Similarity=0.657 Sum_probs=21.2
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCc
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVCAFPV 49 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC~fpv 49 (1082)
-+|.-||.++.++.. .-+-|.+||+.|
T Consensus 3 Y~C~~Cg~~~~~~~~--~~irC~~CG~rI 29 (44)
T smart00659 3 YICGECGRENEIKSK--DVVRCRECGYRI 29 (44)
T ss_pred EECCCCCCEeecCCC--CceECCCCCceE
Confidence 379999999888733 348899999876
No 91
>PF03604 DNA_RNApol_7kD: DNA directed RNA polymerase, 7 kDa subunit; InterPro: IPR006591 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Each class of RNA polymerase is assembled from 9 to 15 different polypeptides. Rbp10 (RNA polymerase CX) is a domain found in RNA polymerase subunit 10; present in RNA polymerase I, II and III.; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 2PMZ_Z 3HKZ_X 2NVX_L 3S1Q_L 2JA6_L 3S17_L 3HOW_L 3HOV_L 3PO2_L 3HOZ_L ....
Probab=66.49 E-value=4.1 Score=31.84 Aligned_cols=26 Identities=27% Similarity=0.755 Sum_probs=18.9
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCc
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPV 49 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpv 49 (1082)
+|.-||.++.+.. ++ -|.|.+||+.|
T Consensus 2 ~C~~Cg~~~~~~~-~~-~irC~~CG~RI 27 (32)
T PF03604_consen 2 ICGECGAEVELKP-GD-PIRCPECGHRI 27 (32)
T ss_dssp BESSSSSSE-BST-SS-TSSBSSSS-SE
T ss_pred CCCcCCCeeEcCC-CC-cEECCcCCCeE
Confidence 6899999998664 33 37999999865
No 92
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=65.48 E-value=3.6 Score=45.26 Aligned_cols=45 Identities=33% Similarity=0.821 Sum_probs=37.6
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchhhhHHH---HhhCCCCCCCcchhh
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE---RKDGNQSCPQCKTRY 72 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye---rkeG~q~CpqCkt~Y 72 (1082)
---|.||=|.+ =|+.|-| ||---|.||. |- -...++.||=||..-
T Consensus 47 ~FdCNICLd~a-----kdPVvTl--CGHLFCWpCl-yqWl~~~~~~~~cPVCK~~V 94 (230)
T KOG0823|consen 47 FFDCNICLDLA-----KDPVVTL--CGHLFCWPCL-YQWLQTRPNSKECPVCKAEV 94 (230)
T ss_pred ceeeeeecccc-----CCCEEee--cccceehHHH-HHHHhhcCCCeeCCcccccc
Confidence 34799998876 5678888 9999999998 65 568899999999865
No 93
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=65.23 E-value=22 Score=38.74 Aligned_cols=49 Identities=22% Similarity=0.361 Sum_probs=38.8
Q ss_pred CcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHHHhh-cCCCCCccEEEE
Q 001413 535 HKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKHVCYV 591 (1082)
Q Consensus 535 h~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~amcff-~DP~~g~~v~~V 591 (1082)
..-|-+.|++++. +.++|++.+.=|-.+.+++++.+.+-.| .|| ++|+|
T Consensus 40 ~s~~~~yN~a~~~----a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~----~~G~i 89 (217)
T PF13712_consen 40 KSMAAAYNEAMEK----AKAKYLVFLHQDVFIINENWLEDILEIFEEDP----NIGMI 89 (217)
T ss_dssp S-TTTHHHHHGGG------SSEEEEEETTEE-SSHHHHHHHHHHHHH-T----TEEEE
T ss_pred cCHHHHHHHHHHh----CCCCEEEEEeCCeEEcchhHHHHHHHHHhhCC----CccEE
Confidence 4478899999986 7999999999999999999999999988 999 55544
No 94
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=63.79 E-value=5.5 Score=41.74 Aligned_cols=52 Identities=27% Similarity=0.500 Sum_probs=35.4
Q ss_pred cCCccccccCCCcccCCCCCccccCCCCCC---CcchhhhHHH-HhhCCCCCCCcchhhccc
Q 001413 18 VGGQVCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYE-RKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeye-rkeG~q~CpqCkt~Ykr~ 75 (1082)
..+..|.||-++- ++..-+| .|.= -|=+.|-+-= ...++..|++|+++|+-.
T Consensus 6 ~~~~~CRIC~~~~-----~~~~~PC-~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEY-----DVVTNYC-NCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCC-----CCccCCc-ccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence 3467999997762 2334578 5532 2346777543 446789999999999755
No 95
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=63.70 E-value=6 Score=29.51 Aligned_cols=39 Identities=38% Similarity=0.944 Sum_probs=27.5
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCc
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 68 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqC 68 (1082)
|.||.+.. ..+.+ -.|+.-.|..|.+.-.+.++..||.|
T Consensus 1 C~iC~~~~-----~~~~~--~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL-----KDPVV--LPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC-----CCcEE--ecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 77887771 12211 25888899999976666677889987
No 96
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=63.63 E-value=5 Score=45.48 Aligned_cols=53 Identities=23% Similarity=0.520 Sum_probs=43.4
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
+-|.+|--++-++.+ ++.-=|+|+.+.|-.|..---.-|...||.|.+.-++.
T Consensus 1 ~~Cp~CKt~~Y~np~--lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~ 53 (300)
T KOG3800|consen 1 QACPKCKTDRYLNPD--LKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN 53 (300)
T ss_pred CCCcccccceecCcc--ceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence 358888888877765 55555699999999999777778999999999998765
No 97
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=60.93 E-value=5.2 Score=45.63 Aligned_cols=46 Identities=33% Similarity=0.808 Sum_probs=38.1
Q ss_pred cCCCCCccccCCCCCCCc--------ch--hhhHHHHhhCCCCCCCcchhhccccC
Q 001413 32 KTVDGNPFVACDVCAFPV--------CR--PCYEYERKDGNQSCPQCKTRYKKHKG 77 (1082)
Q Consensus 32 ~~~~Ge~fvaC~eC~fpv--------Cr--pCyeyerkeG~q~CpqCkt~Ykr~kg 77 (1082)
-..+|+..--|.-|+||| |+ .|||-.|.|-.+.||.|-.|-.|..-
T Consensus 83 ek~l~p~VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~~~dK~Cp~C~d~VqrIeq 138 (389)
T KOG2932|consen 83 EKQLGPRVHFCDRCDFPIAIYGRMIPCKHVFCLECARSDSDKICPLCDDRVQRIEQ 138 (389)
T ss_pred ccccCcceEeecccCCcceeeecccccchhhhhhhhhcCccccCcCcccHHHHHHH
Confidence 345677677799999998 54 69999999999999999999988743
No 98
>PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The function of this family is uncertain. The bacterial members are about 60-70 amino acids in length and the eukaryotic examples are about 120 amino acids in length. The C terminus contains the strongest conservation. The entry contains 2 families: Trm112, which is required for tRNA methylation in Saccharomyces cerevisiae (Baker's yeast) and is found in complexes with 2 tRNA methylases (TRM9 and TRM11) also with putative methyltransferase YDR140W []. The zinc-finger protein Ynr046w is plurifunctional and a component of the eRF1 methyltransferase in yeast []. The crystal structure of Ynr046w has been determined to 1.7 A resolution. It comprises a zinc-binding domain built from both the N- and C-terminal sequences and an inserted domain, absent from bacterial and archaeal orthologs of the protein, composed of three alpha-helices []. UPF0434, which are proteins that are functionally uncharacterised. ; PDB: 3Q87_A 2KPI_A 2K5R_A 2HF1_A 2JS4_A 2J6A_A 2JR6_A 2PK7_A 2JNY_A.
Probab=60.71 E-value=1.8 Score=38.71 Aligned_cols=25 Identities=28% Similarity=0.577 Sum_probs=21.3
Q ss_pred hhhhHHHHhhCCCCCCCcchhhccc
Q 001413 51 RPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 51 rpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
+-|+|++..||.=.||+|+..|--.
T Consensus 42 ~~l~~~~i~eg~L~Cp~c~r~YPI~ 66 (68)
T PF03966_consen 42 HVLLEVEIVEGELICPECGREYPIR 66 (68)
T ss_dssp EHHCTEETTTTEEEETTTTEEEEEE
T ss_pred hhhhcccccCCEEEcCCCCCEEeCC
Confidence 4677889999999999999999543
No 99
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=60.49 E-value=6.5 Score=45.37 Aligned_cols=52 Identities=29% Similarity=0.882 Sum_probs=43.0
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
...|.||++.. +.+--.|++| -|+|-+|-+|-. -.-+++..||.|.++|.+.
T Consensus 249 ~~s~p~~~~~~--~~~d~~~lP~-~~~~~~~l~~~~-t~~~~~~~~~~~rk~~~~~ 300 (327)
T KOG2068|consen 249 PPSCPICYEDL--DLTDSNFLPC-PCGFRLCLFCHK-TISDGDGRCPGCRKPYERN 300 (327)
T ss_pred CCCCCCCCCcc--cccccccccc-cccccchhhhhh-cccccCCCCCccCCccccC
Confidence 46899999985 4445579999 999999999983 4468999999999999764
No 100
>PRK00420 hypothetical protein; Validated
Probab=58.53 E-value=4.2 Score=40.37 Aligned_cols=29 Identities=38% Similarity=0.757 Sum_probs=23.1
Q ss_pred ccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 40 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 40 vaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
-.|.+|++|.= +-++|.-.||.|++.+.-
T Consensus 24 ~~CP~Cg~pLf------~lk~g~~~Cp~Cg~~~~v 52 (112)
T PRK00420 24 KHCPVCGLPLF------ELKDGEVVCPVHGKVYIV 52 (112)
T ss_pred CCCCCCCCcce------ecCCCceECCCCCCeeee
Confidence 46888888873 338999999999998854
No 101
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=58.31 E-value=1.7 Score=42.94 Aligned_cols=48 Identities=31% Similarity=0.723 Sum_probs=35.3
Q ss_pred cCCccccccCCCcccCC-CCCccccCCCCCCCcchhhhHHHHhhCCCCCCCc
Q 001413 18 VGGQVCQICGDNVGKTV-DGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 68 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~-~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqC 68 (1082)
.+...|.+|+...|+-. .| ..|..|...||+.|-.|-.+++-=.|-=|
T Consensus 52 ~~~~~C~~C~~~fg~l~~~~---~~C~~C~~~VC~~C~~~~~~~~~WlC~vC 100 (118)
T PF02318_consen 52 YGERHCARCGKPFGFLFNRG---RVCVDCKHRVCKKCGVYSKKEPIWLCKVC 100 (118)
T ss_dssp HCCSB-TTTS-BCSCTSTTC---EEETTTTEEEETTSEEETSSSCCEEEHHH
T ss_pred cCCcchhhhCCcccccCCCC---CcCCcCCccccCccCCcCCCCCCEEChhh
Confidence 36679999999987763 35 88999999999999988545555556555
No 102
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=57.37 E-value=55 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.289 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHHHHHHHHHHHHhc-CCCCCch
Q 001413 984 PTTLLVINLVGVVAGVSYAINSGYQSWGP--LFGKLFFAFWVIVHLYPFLKGLMG-RQNRTPT 1043 (1082)
Q Consensus 984 ~~~LlilnLvaiv~gi~r~i~~~~~~w~~--l~g~l~~~~Wvv~nl~pflkgL~g-R~~~~P~ 1043 (1082)
=..|+++.+++++-|+.-.++...+..|- +....+..++++|.+|-|+--+.+ |..|.++
T Consensus 99 DssLl~lg~~aLlsgitaff~~nA~~~GlItlll~a~vgGfamy~my~y~yr~~ad~sqr~~~ 161 (226)
T COG4858 99 DSSLLFLGAMALLSGITAFFQKNAQVYGLITLLLTAVVGGFAMYIMYYYAYRMRADNSQRPGT 161 (226)
T ss_pred cccHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCch
Confidence 44578888999999998888655443332 334456677888888887766665 4457777
No 103
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=57.09 E-value=7.7 Score=30.78 Aligned_cols=39 Identities=36% Similarity=0.922 Sum_probs=27.9
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCc
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQC 68 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqC 68 (1082)
|.||-|... ++++.- .||--.|+.|.+--.+. +..||.|
T Consensus 1 C~iC~~~~~-----~~~~~~-~CGH~fC~~C~~~~~~~-~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELR-----DPVVVT-PCGHSFCKECIEKYLEK-NPKCPVC 39 (39)
T ss_dssp ETTTTSB-S-----SEEEEC-TTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred CCCCCCccc-----CcCEEC-CCCCchhHHHHHHHHHC-cCCCcCC
Confidence 778877642 244444 78999999999776666 7999987
No 104
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=55.50 E-value=7.5 Score=30.77 Aligned_cols=40 Identities=30% Similarity=0.728 Sum_probs=30.3
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHh-hCCCCCCCc
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-DGNQSCPQC 68 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-eG~q~CpqC 68 (1082)
|.||.+...... -=.+|+=..|+.|..--.+ .++..||.|
T Consensus 1 C~iC~~~~~~~~------~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPV------ILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEE------EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCC------EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 778888753322 2347899999999987766 788899988
No 105
>KOG3737 consensus Predicted polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=55.27 E-value=41 Score=40.02 Aligned_cols=47 Identities=17% Similarity=0.069 Sum_probs=36.8
Q ss_pred CCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCC
Q 001413 347 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDG 396 (1082)
Q Consensus 347 ~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG 396 (1082)
-|.+||++.|+|.-.| |--...++||-|++.-.=|.=--.|.+.||=
T Consensus 150 Ype~Lpt~SVviVFHN---EGws~LmRTVHSVi~RsP~~~l~eivlvDDf 196 (603)
T KOG3737|consen 150 YPENLPTSSVVIVFHN---EGWSTLMRTVHSVIKRSPRKYLAEIVLVDDF 196 (603)
T ss_pred CcccCCcceEEEEEec---CccHHHHHHHHHHHhcCcHHhhheEEEeccC
Confidence 4689999999999998 9999999999999876533323346667774
No 106
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=54.96 E-value=9.5 Score=43.69 Aligned_cols=64 Identities=33% Similarity=0.790 Sum_probs=46.1
Q ss_pred ccccCCccccc--cCCCcccCCCCCccccCCC-CCCCcchhhhH-----------------------HHH----------
Q 001413 15 IKNVGGQVCQI--CGDNVGKTVDGNPFVACDV-CAFPVCRPCYE-----------------------YER---------- 58 (1082)
Q Consensus 15 ~~~~~~~~Cqi--Cgd~vg~~~~Ge~fvaC~e-C~fpvCrpCye-----------------------yer---------- 58 (1082)
+-++.|-.|.- ||..+-...| +--|.|.. |+|-.||.|.| +||
T Consensus 310 vlq~gGVlCP~pgCG~gll~EPD-~rkvtC~~gCgf~FCR~C~e~yh~geC~~~~~as~t~tc~y~vde~~a~~arwd~a 388 (446)
T KOG0006|consen 310 VLQMGGVLCPRPGCGAGLLPEPD-QRKVTCEGGCGFAFCRECKEAYHEGECSAVFEASGTTTCAYRVDERAAEQARWDAA 388 (446)
T ss_pred eeecCCEecCCCCCCcccccCCC-CCcccCCCCchhHhHHHHHhhhccccceeeeccccccceeeecChhhhhhhhhhhh
Confidence 34566788986 9987655543 33588877 99999999998 332
Q ss_pred -----hhCCCCCCCcchhhccccCCC
Q 001413 59 -----KDGNQSCPQCKTRYKKHKGSP 79 (1082)
Q Consensus 59 -----keG~q~CpqCkt~Ykr~kgsp 79 (1082)
|-.++-||.|.++-.|.-|+.
T Consensus 389 s~~TIk~tTkpCPkChvptErnGGCm 414 (446)
T KOG0006|consen 389 SKETIKKTTKPCPKCHVPTERNGGCM 414 (446)
T ss_pred hhhhhhhccCCCCCccCccccCCceE
Confidence 234677999988888776653
No 107
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=54.55 E-value=9.7 Score=45.68 Aligned_cols=30 Identities=20% Similarity=0.563 Sum_probs=22.8
Q ss_pred CccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 37 NPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 37 e~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
+.-++|++|+.-+ ..+...||+|+++-.|+
T Consensus 219 ~~l~~C~~Cd~l~---------~~~~a~CpRC~~~L~~~ 248 (419)
T PRK15103 219 QGLRSCSCCTAIL---------PADQPVCPRCHTKGYVR 248 (419)
T ss_pred cCCCcCCCCCCCC---------CCCCCCCCCCCCcCcCC
Confidence 4478899999964 23456899999988665
No 108
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF14471 DUF4428: Domain of unknown function (DUF4428)
Probab=51.61 E-value=8 Score=33.20 Aligned_cols=13 Identities=38% Similarity=0.940 Sum_probs=11.3
Q ss_pred cccccCCCcccCC
Q 001413 22 VCQICGDNVGKTV 34 (1082)
Q Consensus 22 ~CqiCgd~vg~~~ 34 (1082)
.|.|||+++|+..
T Consensus 1 ~C~iCg~kigl~~ 13 (51)
T PF14471_consen 1 KCAICGKKIGLFK 13 (51)
T ss_pred CCCcccccccccc
Confidence 5999999999864
No 110
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=49.17 E-value=11 Score=33.51 Aligned_cols=33 Identities=33% Similarity=0.702 Sum_probs=24.5
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchh
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRP 52 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrp 52 (1082)
.+|+|..||.....+.++..|+ |..|++-.=|+
T Consensus 27 TSq~C~~CG~~~~~~~~~r~~~-C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKKRRSGRVFT-CPNCGFEMDRD 59 (69)
T ss_pred CccCccCcccccccccccceEE-cCCCCCEECcH
Confidence 6889999999987755566544 87888865554
No 111
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=48.99 E-value=11 Score=45.05 Aligned_cols=30 Identities=20% Similarity=0.562 Sum_probs=21.4
Q ss_pred ccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 38 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 38 ~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
.-++|++|+..+ . ......||+|++.-.|.
T Consensus 214 ~~~~C~~Cd~~~-~-------~~~~a~CpRC~~~L~~~ 243 (403)
T TIGR00155 214 KLRSCSACHTTI-L-------PAQEPVCPRCSTPLYVR 243 (403)
T ss_pred CCCcCCCCCCcc-C-------CCCCcCCcCCCCcccCC
Confidence 467899999866 1 23446799999986544
No 112
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=48.86 E-value=14 Score=30.48 Aligned_cols=38 Identities=26% Similarity=0.856 Sum_probs=28.7
Q ss_pred CccccccCCCcccCCCCCccccCCCC-CCCcchhhhHHHHhhCC
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDGN 62 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG~ 62 (1082)
...|..|+..+ .|.-| .|.+| .|-+|..||..-+..++
T Consensus 4 ~~~C~~C~~~i----~g~ry-~C~~C~d~dlC~~Cf~~~~~~~~ 42 (44)
T smart00291 4 SYSCDTCGKPI----VGVRY-HCLVCPDYDLCQSCFAKGSAGGE 42 (44)
T ss_pred CcCCCCCCCCC----cCCEE-ECCCCCCccchHHHHhCcCcCCC
Confidence 45799999854 36656 79999 99999999976554443
No 113
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=47.63 E-value=12 Score=31.18 Aligned_cols=46 Identities=26% Similarity=0.627 Sum_probs=32.3
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCC-cchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVCAFP-VCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC~fp-vCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
..|.||.++.-. -.+. .|+=- +|..|.+--++ .+..||-|+++.++
T Consensus 3 ~~C~iC~~~~~~----~~~~---pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 3 EECPICFENPRD----VVLL---PCGHLCFCEECAERLLK-RKKKCPICRQPIES 49 (50)
T ss_dssp SB-TTTSSSBSS----EEEE---TTCEEEEEHHHHHHHHH-TTSBBTTTTBB-SE
T ss_pred CCCccCCccCCc----eEEe---CCCChHHHHHHhHHhcc-cCCCCCcCChhhcC
Confidence 369999997321 1344 45778 99999976666 77999999998753
No 114
>PHA02926 zinc finger-like protein; Provisional
Probab=47.61 E-value=19 Score=39.76 Aligned_cols=63 Identities=24% Similarity=0.511 Sum_probs=43.6
Q ss_pred cccCCccccccCCCcccC--CCCCccccCCCCCCCcchhhhHHHHhh-----CCCCCCCcchhhccccCC
Q 001413 16 KNVGGQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERKD-----GNQSCPQCKTRYKKHKGS 78 (1082)
Q Consensus 16 ~~~~~~~CqiCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerke-----G~q~CpqCkt~Ykr~kgs 78 (1082)
+.+....|.||=+.|-.. ++...|--=..|+-.-|..|..-=|+. +...||.|+++++...=|
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~pS 235 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNITMS 235 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeeeccc
Confidence 345567999999997543 222223333468889999999766653 356799999999876544
No 115
>PRK12495 hypothetical protein; Provisional
Probab=45.76 E-value=11 Score=41.37 Aligned_cols=30 Identities=33% Similarity=0.840 Sum_probs=22.7
Q ss_pred ccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 38 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 38 ~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
.-.-|.+|+.||= +..|...||-|.+.+.+
T Consensus 41 sa~hC~~CG~PIp-------a~pG~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 41 TNAHCDECGDPIF-------RHDGQEFCPTCQQPVTE 70 (226)
T ss_pred chhhcccccCccc-------CCCCeeECCCCCCcccc
Confidence 3445777777774 45999999999999864
No 116
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=45.63 E-value=6.6 Score=44.93 Aligned_cols=36 Identities=28% Similarity=0.816 Sum_probs=26.6
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhhHHHHhhC
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYEYERKDG 61 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCyeyerkeG 61 (1082)
-|.+|--++ ..-.|+-|+|| +|-.|-||+---..-|
T Consensus 7 hCdvC~~d~----T~~~~i~C~eC~~~DLC~pCF~~g~~tg 43 (432)
T COG5114 7 HCDVCFLDM----TDLTFIKCNECPAVDLCLPCFVNGIETG 43 (432)
T ss_pred eehHHHHhh----hcceeeeeecccccceehhhhhcccccc
Confidence 588887664 23469999999 9999999995433333
No 117
>KOG0916 consensus 1,3-beta-glucan synthase/callose synthase catalytic subunit [Cell wall/membrane/envelope biogenesis]
Probab=45.10 E-value=2.4e+02 Score=38.86 Aligned_cols=69 Identities=29% Similarity=0.391 Sum_probs=43.3
Q ss_pred cccchHHHHHHHHHCCCEEEEeCCCCCccc----ccCCCCHHHHHHHHHHhhccchhHhhhcccccccccCCCCCcccch
Q 001413 778 SVTEDILTGFKMHARGWRSIYCMPKRPAFK----GSAPINLSDRLNQVLRWALGSVEILFSRHCPIWYGYGGRLKFLERF 853 (1082)
Q Consensus 778 sVTEDi~Tg~rLh~~GWrsvY~~p~~aaf~----G~aP~tl~~~lkQR~RWA~G~lQIllsk~~Pl~~g~~~~Ls~~QRL 853 (1082)
.+.||+..|+....||-++.++ +-..+-. |....+ .=-..-|.|+=|-.++|. + |-.+.++.+-.-|
T Consensus 1173 nlsEDIfAG~n~tlRgG~itH~-EYiQvGKGRDvGlnqI~-----~FeaKia~G~GEQ~LSRd--~-YrLG~~ldffRmL 1243 (1679)
T KOG0916|consen 1173 NLSEDIFAGFNATLRGGNITHH-EYIQVGKGRDVGLNQIS-----NFEAKIANGNGEQTLSRD--Y-YRLGTQLDFFRML 1243 (1679)
T ss_pred ccchHhhhhhhHHhhCCCcccc-eeeecccccccCcchhh-----hhhhhhcCCCcchhhhHH--H-HHhcccccHHHHH
Confidence 5899999999999999999888 3222212 222221 123456888888777764 1 2224566666555
Q ss_pred hh
Q 001413 854 AY 855 (1082)
Q Consensus 854 ~Y 855 (1082)
++
T Consensus 1244 Sf 1245 (1679)
T KOG0916|consen 1244 SF 1245 (1679)
T ss_pred HH
Confidence 53
No 118
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=43.26 E-value=23 Score=38.41 Aligned_cols=51 Identities=33% Similarity=0.725 Sum_probs=35.2
Q ss_pred cccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHH---------------hhCCCCCCCcchhhc
Q 001413 16 KNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYER---------------KDGNQSCPQCKTRYK 73 (1082)
Q Consensus 16 ~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyer---------------keG~q~CpqCkt~Yk 73 (1082)
...+.-.|.||-|.+- ++.+ -.|+--.|++|-+.-. +.+...||-|++...
T Consensus 14 ~~~~~~~CpICld~~~-----dPVv--T~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is 79 (193)
T PLN03208 14 DSGGDFDCNICLDQVR-----DPVV--TLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS 79 (193)
T ss_pred cCCCccCCccCCCcCC-----CcEE--cCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence 3345568999999752 3344 2689999999996321 113468999999884
No 119
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.02 E-value=16 Score=47.68 Aligned_cols=45 Identities=22% Similarity=0.677 Sum_probs=32.2
Q ss_pred cCCccccccCCCcccCCCCCccccCCCCCC-----CcchhhhHHHHhhC-CCCCCCcchhhc
Q 001413 18 VGGQVCQICGDNVGKTVDGNPFVACDVCAF-----PVCRPCYEYERKDG-NQSCPQCKTRYK 73 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~f-----pvCrpCyeyerkeG-~q~CpqCkt~Yk 73 (1082)
.....|.-||-.. ....|.+||= -.|..| ++.+ .-.||.|++.-.
T Consensus 624 Vg~RfCpsCG~~t-------~~frCP~CG~~Te~i~fCP~C----G~~~~~y~CPKCG~El~ 674 (1121)
T PRK04023 624 IGRRKCPSCGKET-------FYRRCPFCGTHTEPVYRCPRC----GIEVEEDECEKCGREPT 674 (1121)
T ss_pred ccCccCCCCCCcC-------CcccCCCCCCCCCcceeCccc----cCcCCCCcCCCCCCCCC
Confidence 4556899999883 4568999984 367777 3433 367999997654
No 120
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=41.76 E-value=15 Score=30.44 Aligned_cols=27 Identities=30% Similarity=0.684 Sum_probs=15.9
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCc
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPV 49 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpv 49 (1082)
.|+-||..+..+++.. -+-|..||.++
T Consensus 5 ~C~~CG~~~~~~~~~~-~~~Cp~CG~~~ 31 (46)
T PRK00398 5 KCARCGREVELDEYGT-GVRCPYCGYRI 31 (46)
T ss_pred ECCCCCCEEEECCCCC-ceECCCCCCeE
Confidence 5777777766655443 34565555544
No 121
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=41.48 E-value=11 Score=43.76 Aligned_cols=31 Identities=29% Similarity=0.928 Sum_probs=26.0
Q ss_pred CCCcchhhhHHHHhhCC--CCCCCcchhhcccc
Q 001413 46 AFPVCRPCYEYERKDGN--QSCPQCKTRYKKHK 76 (1082)
Q Consensus 46 ~fpvCrpCyeyerkeG~--q~CpqCkt~Ykr~k 76 (1082)
+|.|||.|+---|-+-+ +-||-|.++|+..|
T Consensus 1 ~yqIc~~cwh~i~~~~~~~grcpncr~ky~e~k 33 (327)
T KOG2068|consen 1 GYQICDSCWHHIATSAEKKGRCPNCRTKYKEEK 33 (327)
T ss_pred CceeeHHHHhccccccccccCCccccCccchhh
Confidence 57899999987777666 99999999997543
No 122
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=40.51 E-value=10 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=12.9
Q ss_pred HHHHhhCCCCCCCcchhhcc
Q 001413 55 EYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 55 eyerkeG~q~CpqCkt~Ykr 74 (1082)
.|+-++....||.|+.+-.+
T Consensus 10 ~y~~~~~~~~CP~Cg~~~~~ 29 (33)
T cd00350 10 IYDGEEAPWVCPVCGAPKDK 29 (33)
T ss_pred EECCCcCCCcCcCCCCcHHH
Confidence 34444467899999876543
No 123
>PRK07220 DNA topoisomerase I; Validated
Probab=40.47 E-value=13 Score=47.62 Aligned_cols=48 Identities=19% Similarity=0.587 Sum_probs=32.5
Q ss_pred ccccccCCCcccC--CCCCccccCCCCCCCcchhhhHHHHh----hCCCCCCCcch
Q 001413 21 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK----DGNQSCPQCKT 70 (1082)
Q Consensus 21 ~~CqiCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk----eG~q~CpqCkt 70 (1082)
..|..||.++... ..|..|+.|. +||-|+--+-..++ .-++.||.|+.
T Consensus 590 ~~CP~Cg~~l~~r~~r~g~~f~gCs--~yp~C~~~~~l~~~g~~~~~~~~Cp~Cg~ 643 (740)
T PRK07220 590 GKCPLCGSDLMVRRSKRGSRFIGCE--GYPECTFSLPLPKSGQIIVTDKVCEAHGL 643 (740)
T ss_pred cccccCCCeeeEEecCCCceEEEcC--CCCCCCceeeCCCCCccccCCCCCCCCCC
Confidence 4899999775432 3466799996 67888755543321 12478999985
No 124
>PF11077 DUF2616: Protein of unknown function (DUF2616); InterPro: IPR020201 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf52; it is a family of uncharacterised viral proteins.
Probab=40.45 E-value=9.8 Score=40.48 Aligned_cols=35 Identities=29% Similarity=0.850 Sum_probs=25.7
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCc-chh--------------hhHHHHhhCC
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPV-CRP--------------CYEYERKDGN 62 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpv-Crp--------------CyeyerkeG~ 62 (1082)
|+-|... .+.+.-..|+.|-||+ |-. || ||..+++
T Consensus 55 C~fC~~~----~~~~~~~~C~~CfFPl~c~~~~~eEla~Y~LLSVCy-~E~~~~~ 104 (173)
T PF11077_consen 55 CDFCYAV----NTETDRLFCKQCFFPLYCTNGIDEELATYCLLSVCY-WESNEDS 104 (173)
T ss_pred hhHHHhc----ccchhHHHHHhccccccccccchHHHHHHHHHHHHH-hhccccc
Confidence 9999875 2344578899999999 654 67 7766654
No 125
>COG4818 Predicted membrane protein [Function unknown]
Probab=39.87 E-value=1.7e+02 Score=28.69 Aligned_cols=26 Identities=31% Similarity=0.453 Sum_probs=19.3
Q ss_pred hhhhHHHHHHHHHHHHHHHcCCCCCe
Q 001413 931 IGGVSSHLFAVFQGLLKVLAGIDTNF 956 (1082)
Q Consensus 931 I~~vsa~Lfav~~aLlk~L~g~~~~F 956 (1082)
|.+..+++++.+.+++-.+.-++.+|
T Consensus 5 iegaLCY~lgwitGllFlllEre~~F 30 (105)
T COG4818 5 IEGALCYLLGWITGLLFLLLERESKF 30 (105)
T ss_pred hhhHHHHHHHHHHHHHHHHhhccCcc
Confidence 45566888888899888777666666
No 126
>COG0551 TopA Zn-finger domain associated with topoisomerase type I [DNA replication, recombination, and repair]
Probab=38.25 E-value=18 Score=36.64 Aligned_cols=50 Identities=34% Similarity=0.759 Sum_probs=36.9
Q ss_pred ccCCccccccCCCccc--CCCCCccccCCCCCCCcchhhhHH---HHhhCCCCCCCcch
Q 001413 17 NVGGQVCQICGDNVGK--TVDGNPFVACDVCAFPVCRPCYEY---ERKDGNQSCPQCKT 70 (1082)
Q Consensus 17 ~~~~~~CqiCgd~vg~--~~~Ge~fvaC~eC~fpvCrpCyey---erkeG~q~CpqCkt 70 (1082)
....+.|..||....+ ...| -|+.|. .||.|+- |+- +..+....||+|+.
T Consensus 14 ~~~~~~Cp~Cg~~m~~~~~~~g-~f~gCs--~yP~C~~-~~~~~~~~~~~~~~Cp~C~~ 68 (140)
T COG0551 14 LKTGQICPKCGKNMVKKFGKYG-IFLGCS--NYPKCDY-YEPEKAIAEKTGVKCPKCGK 68 (140)
T ss_pred cccCccCCcCCCeeEEEEccCC-eEEEeC--CCCCCCC-CcccccccccCceeCCCCCC
Confidence 3568899999999655 4568 999994 6999996 221 22256689999997
No 127
>KOG3736 consensus Polypeptide N-acetylgalactosaminyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=43 Score=41.89 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=41.5
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCch
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAM 399 (1082)
Q Consensus 348 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ 399 (1082)
...||++-|+|+-+| |...+..+||-|+...-=|.=--.+.|.||+...
T Consensus 138 ~~~Lp~~Svii~f~n---E~~s~llRtv~Svi~rtp~~lLkEIiLVdD~S~~ 186 (578)
T KOG3736|consen 138 SDKLPTTSVIIIFHN---EAWSTLLRTVHSVINRTPPYLLKEIILVDDFSDR 186 (578)
T ss_pred ccccCCCceEEEEec---CCCcchhheEEeehccCChhHeEEEEEeecCcch
Confidence 456999999999999 9999999999998887655556678999998754
No 128
>PRK12380 hydrogenase nickel incorporation protein HybF; Provisional
Probab=37.44 E-value=10 Score=37.55 Aligned_cols=26 Identities=23% Similarity=0.519 Sum_probs=18.4
Q ss_pred cccCCCCCCCcchhhhHHHHhhCCCCCCCcchh
Q 001413 39 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71 (1082)
Q Consensus 39 fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~ 71 (1082)
-.-|+.|+ ++++..+-.-.||+|+.+
T Consensus 70 ~~~C~~Cg-------~~~~~~~~~~~CP~Cgs~ 95 (113)
T PRK12380 70 QAWCWDCS-------QVVEIHQHDAQCPHCHGE 95 (113)
T ss_pred EEEcccCC-------CEEecCCcCccCcCCCCC
Confidence 35577777 556666666679999975
No 129
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=37.01 E-value=13 Score=44.41 Aligned_cols=51 Identities=22% Similarity=0.585 Sum_probs=35.5
Q ss_pred CccccccCCCcccCCCCCccccCCCCC-CCcchhhhHHHHhhCCCCCCCcchhhccccC
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGNQSCPQCKTRYKKHKG 77 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kg 77 (1082)
...|-.|..+| +|-.+|-|.||. |-+|-+|+----.-|.+ ||.-+|+-.+.
T Consensus 14 ky~C~~C~~di----t~~i~ikCaeCp~fdLCl~CFs~GaE~~~H---~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCSLDI----TGLIRIKCAECPDFDLCLQCFSVGAETGKH---QNDHPYRIMDT 65 (438)
T ss_pred CCCCccHhHHh----ccceEEEeecCCCcchhHHHHhcccccCCC---CCCCCceeecC
Confidence 34799999886 477899999998 99999999433223322 44466665443
No 130
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=36.76 E-value=31 Score=30.48 Aligned_cols=47 Identities=23% Similarity=0.661 Sum_probs=34.4
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
-|+.|+.++--+. .+-++-=.||-| |.+|-|-.. +..||-|+--+-+
T Consensus 7 nCE~C~~dLp~~s-~~A~ICSfECTF--C~~C~e~~l---~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDS-PEAYICSFECTF--CADCAETML---NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCC-CcceEEeEeCcc--cHHHHHHHh---cCcCcCCCCcccc
Confidence 6999999974442 355666679987 999997654 4789999876643
No 131
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=36.37 E-value=24 Score=29.24 Aligned_cols=31 Identities=32% Similarity=0.806 Sum_probs=24.9
Q ss_pred cccccCCCcccCCCCCccccCCCCC-CCcchhhhHHH
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYE 57 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeye 57 (1082)
.|.+|+..| . | ....|.+|. |-+|.+||...
T Consensus 2 ~C~~C~~~i--~--g-~r~~C~~C~d~dLC~~Cf~~~ 33 (46)
T cd02249 2 SCDGCLKPI--V--G-VRYHCLVCEDFDLCSSCYAKG 33 (46)
T ss_pred CCcCCCCCC--c--C-CEEECCCCCCCcCHHHHHCcC
Confidence 588999854 2 5 688999997 99999999633
No 132
>COG4739 Uncharacterized protein containing a ferredoxin domain [Function unknown]
Probab=35.53 E-value=20 Score=37.22 Aligned_cols=46 Identities=22% Similarity=0.520 Sum_probs=40.9
Q ss_pred CcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 29 NVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 29 ~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
-||+..+|-.-+-|.-|||.-|..=.|-++..-+-.=|+|.-+|--
T Consensus 77 LIG~Kasg~~glnCgaCGfesC~e~~e~~k~~eeF~GP~C~~k~iD 122 (182)
T COG4739 77 LIGVKASGTVGLNCGACGFESCSEMLERDKVGEEFVGPNCMFKYID 122 (182)
T ss_pred EEEeccCCccccccccccchhHHHHHHHHhhhhhccCcchhhhhhh
Confidence 3788888998999999999999999888888888999999999953
No 133
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=34.83 E-value=29 Score=41.54 Aligned_cols=51 Identities=22% Similarity=0.614 Sum_probs=35.4
Q ss_pred ccccC-CccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhc
Q 001413 15 IKNVG-GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYK 73 (1082)
Q Consensus 15 ~~~~~-~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Yk 73 (1082)
+.++. .-.|.||.+..- ++.+ -.|+--.|..|...-... ...||.|++.+.
T Consensus 20 l~~Le~~l~C~IC~d~~~-----~Pvi--tpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~ 71 (397)
T TIGR00599 20 LYPLDTSLRCHICKDFFD-----VPVL--TSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQ 71 (397)
T ss_pred ccccccccCCCcCchhhh-----CccC--CCCCCchhHHHHHHHHhC-CCCCCCCCCccc
Confidence 34433 358999998651 2333 368999999999754433 458999999874
No 134
>cd00730 rubredoxin Rubredoxin; nonheme iron binding domains containing a [Fe(SCys)4] center. Rubredoxins are small nonheme iron proteins. The iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc. They are believed to be involved in electron transfer.
Probab=34.02 E-value=13 Score=32.01 Aligned_cols=8 Identities=38% Similarity=1.107 Sum_probs=4.1
Q ss_pred CCCCcchh
Q 001413 64 SCPQCKTR 71 (1082)
Q Consensus 64 ~CpqCkt~ 71 (1082)
.||+|+.+
T Consensus 36 ~CP~C~a~ 43 (50)
T cd00730 36 VCPVCGAG 43 (50)
T ss_pred CCCCCCCc
Confidence 55555543
No 135
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=33.91 E-value=91 Score=37.00 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=28.2
Q ss_pred cCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001413 534 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 576 (1082)
Q Consensus 534 hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am 576 (1082)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+| -++.|-+
T Consensus 142 R~GKgEGMiiG~lLAk-~~g~~YVGFiDADNyiP--GaV~EYv 181 (393)
T PRK14503 142 RSGKGEGMIIGLLLAK-ALGARYVGFVDADNYIP--GAVNEYV 181 (393)
T ss_pred ecCcchHHHHHHHHHH-HhCCCeEeEeecccCCC--chHHHHH
Confidence 3458888875443322 35899999999999976 4677654
No 136
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=33.64 E-value=28 Score=29.38 Aligned_cols=30 Identities=27% Similarity=0.938 Sum_probs=25.2
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhhH
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 55 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCye 55 (1082)
.|..|+.++. +...+.|.+| .|-+|-+||.
T Consensus 2 ~Cd~C~~~~~----~g~r~~C~~C~d~dLC~~Cf~ 32 (49)
T cd02335 2 HCDYCSKDIT----GTIRIKCAECPDFDLCLECFS 32 (49)
T ss_pred CCCCcCCCCC----CCcEEECCCCCCcchhHHhhh
Confidence 5888987652 4588999999 9999999995
No 137
>PF11238 DUF3039: Protein of unknown function (DUF3039); InterPro: IPR021400 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=33.14 E-value=16 Score=32.37 Aligned_cols=14 Identities=36% Similarity=0.854 Sum_probs=8.6
Q ss_pred CCCCCCcchhhccc
Q 001413 62 NQSCPQCKTRYKKH 75 (1082)
Q Consensus 62 ~q~CpqCkt~Ykr~ 75 (1082)
.-.||+||.-|..+
T Consensus 44 ~PVCP~Ck~iye~l 57 (58)
T PF11238_consen 44 FPVCPECKEIYESL 57 (58)
T ss_pred CCCCcCHHHHHHhc
Confidence 34567777777543
No 138
>TIGR02443 conserved hypothetical metal-binding protein. Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N-terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various Proteobacteria.
Probab=32.87 E-value=23 Score=31.57 Aligned_cols=31 Identities=23% Similarity=0.601 Sum_probs=24.8
Q ss_pred cCCccccccCCC---cccCCCCCccccCCCCCCC
Q 001413 18 VGGQVCQICGDN---VGKTVDGNPFVACDVCAFP 48 (1082)
Q Consensus 18 ~~~~~CqiCgd~---vg~~~~Ge~fvaC~eC~fp 48 (1082)
..|-+|.-|+.- +...+||...|-|-+|+|.
T Consensus 7 IAGA~CP~C~~~Dtl~~~~e~~~e~vECv~Cg~~ 40 (59)
T TIGR02443 7 IAGAVCPACSAQDTLAMWKENNIELVECVECGYQ 40 (59)
T ss_pred eccccCCCCcCccEEEEEEeCCceEEEeccCCCc
Confidence 467799999854 4446889999999999985
No 139
>PRK11827 hypothetical protein; Provisional
Probab=32.76 E-value=26 Score=31.28 Aligned_cols=35 Identities=23% Similarity=0.480 Sum_probs=20.9
Q ss_pred CcchhhhHHHHhhCCCCCCCcchhhccccCCCccc
Q 001413 48 PVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAIL 82 (1082)
Q Consensus 48 pvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~ 82 (1082)
|+|+-=.+|...+..-.|..|+-.|--..|=|-.-
T Consensus 12 P~ckg~L~~~~~~~~Lic~~~~laYPI~dgIPVlL 46 (60)
T PRK11827 12 PVCNGKLWYNQEKQELICKLDNLAFPLRDGIPVLL 46 (60)
T ss_pred CCCCCcCeEcCCCCeEECCccCeeccccCCccccC
Confidence 45554445544344467888888886665555443
No 140
>PF09484 Cas_TM1802: CRISPR-associated protein TM1802 (cas_TM1802); InterPro: IPR013389 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor class of Cas proteins found in at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial [].
Probab=32.75 E-value=23 Score=44.30 Aligned_cols=41 Identities=27% Similarity=0.490 Sum_probs=25.3
Q ss_pred ccCCccccccCCCcccCCCCCc-----------ccc-----CCCCCCCcchhhhHHH
Q 001413 17 NVGGQVCQICGDNVGKTVDGNP-----------FVA-----CDVCAFPVCRPCYEYE 57 (1082)
Q Consensus 17 ~~~~~~CqiCgd~vg~~~~Ge~-----------fva-----C~eC~fpvCrpCyeye 57 (1082)
....++|.|||.+-.++.+-.. |++ =.-=.||||..||..-
T Consensus 195 ~~~~g~C~iCg~~~~V~~~~~~~~Kfyt~DK~gf~~g~~~k~~~knfpiC~~C~~~l 251 (593)
T PF09484_consen 195 SKKDGVCSICGKEKEVYGDVSKPFKFYTTDKPGFASGFDKKNAWKNFPICQDCALKL 251 (593)
T ss_pred cCCCCeEEeCCCCCeecccchhhheeeecCCcccccccccccccccChhhHHHHHHH
Confidence 3455689999999444444222 222 0123789999999654
No 141
>COG1996 RPC10 DNA-directed RNA polymerase, subunit RPC10 (contains C4-type Zn-finger) [Transcription]
Probab=32.68 E-value=21 Score=30.70 Aligned_cols=29 Identities=21% Similarity=0.456 Sum_probs=20.6
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 49 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpv 49 (1082)
.-+|..||.++.++. ...-+.|..|++.|
T Consensus 6 ~Y~C~~Cg~~~~~~~-~~~~irCp~Cg~rI 34 (49)
T COG1996 6 EYKCARCGREVELDQ-ETRGIRCPYCGSRI 34 (49)
T ss_pred EEEhhhcCCeeehhh-ccCceeCCCCCcEE
Confidence 347999999995443 23358898898865
No 142
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=32.62 E-value=21 Score=26.96 Aligned_cols=28 Identities=32% Similarity=0.920 Sum_probs=12.0
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhh
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 53 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 53 (1082)
.|.+|+..+. |+.+--|.+|.|-+...|
T Consensus 2 ~C~~C~~~~~----~~~~Y~C~~Cdf~lH~~C 29 (30)
T PF07649_consen 2 RCDACGKPID----GGWFYRCSECDFDLHEEC 29 (30)
T ss_dssp --TTTS--------S--EEE-TTT-----HHH
T ss_pred cCCcCCCcCC----CCceEECccCCCccChhc
Confidence 5899998864 357889999999998877
No 143
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=32.22 E-value=16 Score=43.05 Aligned_cols=63 Identities=24% Similarity=0.514 Sum_probs=40.9
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcc-hhhhHHHHhhCCCCCCCcchhh---ccc--cCCCcccCC
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVC-RPCYEYERKDGNQSCPQCKTRY---KKH--KGSPAILGD 84 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvC-rpCyeyerkeG~q~CpqCkt~Y---kr~--kgsprv~gd 84 (1082)
.+--|..||+.+|+...----.+|-. -.= |==|||--++|.++||-|..-- ||. -|||-|+.+
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsH---IfH~rCl~e~L~~n~~rsCP~CrklrSs~~rpgfvgs~~Vese 432 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSH---IFHLRCLQEILENNGTRSCPNCRKLRSSMKRPGFVGSVPVESE 432 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhH---HHHHHHHHHHHHhCCCCCCccHHHHHhhccCCCCcCCCccccc
Confidence 34579999999999855444455521 111 1126777899999999998322 222 367887765
No 144
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=31.45 E-value=29 Score=28.75 Aligned_cols=45 Identities=29% Similarity=0.778 Sum_probs=32.3
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHh-----hCCCCCCCcch
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERK-----DGNQSCPQCKT 70 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerk-----eG~q~CpqCkt 70 (1082)
+|+|||. ..+++..|.|..|.--+=..|.....+ ++.=.||.|+.
T Consensus 1 ~C~vC~~----~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~~ 50 (51)
T PF00628_consen 1 YCPVCGQ----SDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCRP 50 (51)
T ss_dssp EBTTTTS----SCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHHH
T ss_pred eCcCCCC----cCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCcC
Confidence 5899999 566778999999987666677655422 34567777754
No 145
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=31.39 E-value=41 Score=27.48 Aligned_cols=43 Identities=23% Similarity=0.716 Sum_probs=31.3
Q ss_pred ccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcch
Q 001413 23 CQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKT 70 (1082)
Q Consensus 23 CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt 70 (1082)
|.+|-.+. +++..+++ = .|+=-+|..|.+--- .....||.|++
T Consensus 2 C~~C~~~~--~~~~~~~l-~-~CgH~~C~~C~~~~~-~~~~~CP~C~k 44 (44)
T PF14634_consen 2 CNICFEKY--SEERRPRL-T-SCGHIFCEKCLKKLK-GKSVKCPICRK 44 (44)
T ss_pred CcCcCccc--cCCCCeEE-c-ccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence 78888887 33333333 2 679999999996554 67789999985
No 146
>PRK07219 DNA topoisomerase I; Validated
Probab=30.57 E-value=30 Score=44.99 Aligned_cols=53 Identities=23% Similarity=0.615 Sum_probs=33.7
Q ss_pred CccccccCCCcccC--CCCCccccCCCCCCCcchhhhHHHH----hhCCCCCCCcchhhccc
Q 001413 20 GQVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYER----KDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyer----keG~q~CpqCkt~Ykr~ 75 (1082)
...|..||..+... ..|. |..|. +||-|+--+..-+ ..-...||.|+.+..+.
T Consensus 688 ~~~CP~Cg~~l~~k~gr~G~-F~~Cs--~yp~C~~~~~l~~~~~~~~~~~~CpkCg~~l~~~ 746 (822)
T PRK07219 688 IGPCPKCGGELAIKQLKYGS-FLGCT--NYPKCKYTLPLPRRGKITVTDEKCPECGLPLLRV 746 (822)
T ss_pred cccCCCCCCeeEEEcCCCCC-eeeCC--CCCCCCceeecccccccccccCCCCCCCCeEEEE
Confidence 45799998765442 3565 99996 6777764332211 12347899999866543
No 147
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=30.12 E-value=4.4e+02 Score=30.29 Aligned_cols=56 Identities=16% Similarity=0.250 Sum_probs=35.9
Q ss_pred CCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEE-EEecCCC-chhhHHHhhh
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSC-YVSDDGA-AMLTFEALSE 407 (1082)
Q Consensus 348 ~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~-yvsDDG~-~~ltf~al~E 407 (1082)
..+-++|=|+.|-.| +++ ..-.=.-.++.++||++++++ ++..|.. -.-|.+.|.+
T Consensus 21 ~~~~e~VLILtplrn--a~~--~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d~t~~~l~~ 78 (269)
T PF03452_consen 21 ARNKESVLILTPLRN--AAS--FLPDYFDNLLSLTYPHELISLGFLVSDSSEFDNTLKILEA 78 (269)
T ss_pred cccCCeEEEEEecCC--chH--HHHHHHHHHHhCCCCchheEEEEEcCCCchhHHHHHHHHH
Confidence 355678888888877 454 355556667888999998877 4444433 1334444443
No 148
>PRK14973 DNA topoisomerase I; Provisional
Probab=30.09 E-value=31 Score=45.60 Aligned_cols=48 Identities=21% Similarity=0.591 Sum_probs=31.9
Q ss_pred ccccccCCCcccC--CCCCccccCCCCCCCcchhhhHHHHh-hC-----CCCCCCcchh
Q 001413 21 QVCQICGDNVGKT--VDGNPFVACDVCAFPVCRPCYEYERK-DG-----NQSCPQCKTR 71 (1082)
Q Consensus 21 ~~CqiCgd~vg~~--~~Ge~fvaC~eC~fpvCrpCyeyerk-eG-----~q~CpqCkt~ 71 (1082)
..|..||.++-+. ..|. |..|. +||-|+-.+...+. .| .+.||.|+.+
T Consensus 589 ~~CP~CG~~l~ik~~k~gk-FigCS--~Yp~Ck~t~~L~~~~~g~~~~~~~~Cp~CG~p 644 (936)
T PRK14973 589 GPCPVCGKDLRIKHIGSSQ-FIGCS--GYPDCTFNIGLPGTTWGWAIRTDEVCPIHHLN 644 (936)
T ss_pred ccCCcccccceeecccCce-eEECC--CCCCCCccccCCccccccCCCCCCCCCCCCCC
Confidence 5799999876432 3454 99996 66888865544322 12 3689999973
No 149
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=29.93 E-value=15 Score=27.12 Aligned_cols=15 Identities=27% Similarity=0.733 Sum_probs=10.6
Q ss_pred HHhhCCCCCCCcchh
Q 001413 57 ERKDGNQSCPQCKTR 71 (1082)
Q Consensus 57 erkeG~q~CpqCkt~ 71 (1082)
+..++...||.|+++
T Consensus 11 ~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 11 EIDPDAKFCPNCGAK 25 (26)
T ss_pred cCCcccccChhhCCC
Confidence 346777888888765
No 150
>PF14319 Zn_Tnp_IS91: Transposase zinc-binding domain
Probab=29.58 E-value=33 Score=33.86 Aligned_cols=38 Identities=26% Similarity=0.715 Sum_probs=27.8
Q ss_pred cCCCcccCCCCCccccCCCCCCC--cchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 26 CGDNVGKTVDGNPFVACDVCAFP--VCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 26 Cgd~vg~~~~Ge~fvaC~eC~fp--vCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
||.. +-|-.-..|.+|+.- ++..| +|..||+|..++++
T Consensus 33 Crt~----~~G~~~~~C~~Cg~~~~~~~SC-------k~R~CP~C~~~~~~ 72 (111)
T PF14319_consen 33 CRTE----ALGFHRYRCEDCGHEKIVYNSC-------KNRHCPSCQAKATE 72 (111)
T ss_pred cCCc----cCCcceeecCCCCceEEecCcc-------cCcCCCCCCChHHH
Confidence 6654 346677889999753 55556 47899999999965
No 151
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.46 E-value=33 Score=37.56 Aligned_cols=39 Identities=23% Similarity=0.585 Sum_probs=25.7
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchh
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~ 71 (1082)
.+.|.+||..+..++ ..+|..|.+.-..- ...||+|+.+
T Consensus 5 P~~C~~C~~~~~~~~------------~~lC~~C~~~l~~~-~~~C~~Cg~~ 43 (227)
T PRK11595 5 PGLCWLCRMPLALSH------------WGICSVCSRALRTL-KTCCPQCGLP 43 (227)
T ss_pred CCcCccCCCccCCCC------------CcccHHHHhhCCcc-cCcCccCCCc
Confidence 357999998873321 23788887654332 3589999864
No 152
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=28.70 E-value=36 Score=28.62 Aligned_cols=36 Identities=22% Similarity=0.494 Sum_probs=26.3
Q ss_pred cccccCCCcccCCCCCccccCCCCC-CCcchhhhHHHHhhCC
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCA-FPVCRPCYEYERKDGN 62 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~-fpvCrpCyeyerkeG~ 62 (1082)
.|.+||-++. .+..-|-.++ +-+|.+||+-.|--++
T Consensus 2 ~C~~Cg~D~t-----~vryh~~~~~~~dLC~~CF~~G~f~~~ 38 (45)
T cd02336 2 HCFTCGNDCT-----RVRYHNLKAKKYDLCPSCYQEGRFPSN 38 (45)
T ss_pred cccCCCCccC-----ceEEEecCCCccccChHHHhCcCCCCC
Confidence 6999999984 2556666675 9999999965554443
No 153
>PF15050 SCIMP: SCIMP protein
Probab=28.57 E-value=51 Score=33.28 Aligned_cols=40 Identities=23% Similarity=0.587 Sum_probs=26.0
Q ss_pred ccccccchhhhhhhHHHHHHH-----HHHHHHHHcCCCCCeeecCC
Q 001413 921 EWWRNEQFWVIGGVSSHLFAV-----FQGLLKVLAGIDTNFTVTSK 961 (1082)
Q Consensus 921 ~wWrneq~W~I~~vsa~Lfav-----~~aLlk~L~g~~~~F~VTpK 961 (1082)
+|||+ .||+|-++...+..+ +-.+...+.....+|+++.-
T Consensus 2 ~WWr~-nFWiiLAVaII~vS~~lglIlyCvcR~~lRqGkkweiakp 46 (133)
T PF15050_consen 2 SWWRD-NFWIILAVAIILVSVVLGLILYCVCRWQLRQGKKWEIAKP 46 (133)
T ss_pred chHHh-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccceeccc
Confidence 59996 799988775444332 23344556667788888763
No 154
>PRK12438 hypothetical protein; Provisional
Probab=28.55 E-value=1.1e+03 Score=31.90 Aligned_cols=46 Identities=22% Similarity=0.400 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHhhh
Q 001413 1015 GKLFFAFWVIVHLYPFLKGLMGRQNRTPTIVVVWSILLASIFSLLW 1060 (1082)
Q Consensus 1015 g~l~~~~Wvv~nl~pflkgL~gR~~~~P~~v~~~s~lla~~f~~lw 1060 (1082)
++.++++=.++...-|+.+++.|+-|.|.+.+..-++.+++...+|
T Consensus 259 a~~iL~~ia~i~Av~f~~~i~~r~~rlp~i~~~llv~~~iv~g~i~ 304 (991)
T PRK12438 259 AKLILVAIAVLCAVAFFAAIFLRDLRIPAMAAALLVLSAILVGGLW 304 (991)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555556667777888999877765555554444343
No 155
>PF03884 DUF329: Domain of unknown function (DUF329); InterPro: IPR005584 The biological function of these short proteins is unknown, but they contain four conserved cysteines, suggesting that they all bind zinc. YacG (Q5X8H6 from SWISSPROT) from Escherichia coli has been shown to bind zinc and contains the structural motifs typical of zinc-binding proteins []. The conserved four cysteine motif in these proteins (-C-X(2)-C-X(15)-C-X(3)-C-) is not found in other zinc-binding proteins with known structures.; GO: 0008270 zinc ion binding; PDB: 1LV3_A.
Probab=27.84 E-value=35 Score=30.18 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=13.4
Q ss_pred HhhCCCCCCCcchhhc------cccCCCcccCCC
Q 001413 58 RKDGNQSCPQCKTRYK------KHKGSPAILGDR 85 (1082)
Q Consensus 58 rkeG~q~CpqCkt~Yk------r~kgsprv~gd~ 85 (1082)
..+.|..-|=|-+|=| -..|+=||+|.+
T Consensus 14 ~~~~n~~rPFCS~RCk~iDLg~W~~e~Y~Ip~~~ 47 (57)
T PF03884_consen 14 WSPENPFRPFCSERCKLIDLGRWANEEYRIPGEP 47 (57)
T ss_dssp -SSSSS--SSSSHHHHHHHHS-SSSSS----SSS
T ss_pred ccCCCCcCCcccHhhcccCHHHHhcCCcccCCCC
Confidence 3466666666666655 456777888873
No 156
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=27.68 E-value=17 Score=26.36 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=9.1
Q ss_pred HHhhCCCCCCCcchh
Q 001413 57 ERKDGNQSCPQCKTR 71 (1082)
Q Consensus 57 erkeG~q~CpqCkt~ 71 (1082)
|..++.+-||+|+++
T Consensus 8 ~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 8 EIEDDAKFCPNCGTP 22 (23)
T ss_pred CCCCcCcchhhhCCc
Confidence 345566667777664
No 157
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=27.63 E-value=1.3e+02 Score=35.51 Aligned_cols=40 Identities=18% Similarity=0.228 Sum_probs=28.2
Q ss_pred cCcchhhhHHHHHhhcccCCCCEEEEecCCCCCCchHHHHHHH
Q 001413 534 HHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAM 576 (1082)
Q Consensus 534 hh~KAGalNallrvSav~tngp~Il~lDcDh~i~~~~~Lr~am 576 (1082)
.+.|+-.|=-.+-... +.+.+||-.+|||.|+|- ++.|-+
T Consensus 141 R~GKgEGMiiG~lLAk-~~g~~YVGFiDaDNyiPG--aV~EYv 180 (381)
T TIGR02460 141 RSGKGEGMLLGLLLAK-AIGAEYVGFVDADNYFPG--AVNEYV 180 (381)
T ss_pred ecCcchHHHHHHHHHH-HhCCceEeEeecccCCCc--hHHHHH
Confidence 4558888875443322 358999999999999764 566644
No 158
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.03 E-value=30 Score=42.46 Aligned_cols=51 Identities=24% Similarity=0.539 Sum_probs=32.3
Q ss_pred CCCCC-ccccCCCCCCC-cchhhh---HHHHhhCCCCCCCcchhhccccCCCcccC
Q 001413 33 TVDGN-PFVACDVCAFP-VCRPCY---EYERKDGNQSCPQCKTRYKKHKGSPAILG 83 (1082)
Q Consensus 33 ~~~Ge-~fvaC~eC~fp-vCrpCy---eyerkeG~q~CpqCkt~Ykr~kgsprv~g 83 (1082)
+-.|- +++.|.+|+.. .|.-|= .|-++++.-.|..|+..++-..-||.=.+
T Consensus 206 nrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s 261 (505)
T TIGR00595 206 NRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGS 261 (505)
T ss_pred eCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCC
Confidence 44555 47778888765 466664 33455666667777777776666666443
No 159
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.69 E-value=48 Score=38.42 Aligned_cols=44 Identities=23% Similarity=0.623 Sum_probs=28.5
Q ss_pred CCccccccCCCc--c-----cCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchh
Q 001413 19 GGQVCQICGDNV--G-----KTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71 (1082)
Q Consensus 19 ~~~~CqiCgd~v--g-----~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~ 71 (1082)
+.+.|.+||..= + .+.+|.-+.-|.-|+. |.+-.+-.||.|+..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~t---------eW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCAT---------EWHYVRVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCC---------cccccCccCCCCCCC
Confidence 345999999871 1 1268999999988764 222234556666653
No 160
>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional
Probab=26.50 E-value=22 Score=35.36 Aligned_cols=28 Identities=14% Similarity=0.533 Sum_probs=16.5
Q ss_pred ccCCCCCCCcchhhhHHHHhhCC-CCCCCcchhhcc
Q 001413 40 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRYKK 74 (1082)
Q Consensus 40 vaC~eC~fpvCrpCyeyerkeG~-q~CpqCkt~Ykr 74 (1082)
.-|+.|+ ++++..+-. ..||+|+.+-.+
T Consensus 72 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~~~ 100 (117)
T PRK00564 72 LECKDCS-------HVFKPNALDYGVCEKCHSKNVI 100 (117)
T ss_pred EEhhhCC-------CccccCCccCCcCcCCCCCceE
Confidence 4466666 334444322 349999987544
No 161
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=26.45 E-value=18 Score=42.32 Aligned_cols=45 Identities=29% Similarity=0.737 Sum_probs=37.3
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhh
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRY 72 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Y 72 (1082)
+|.||-+=+-.+- -=-||+-..|+.|.--.-++||..||-|++.-
T Consensus 45 ~c~icl~llk~tm------ttkeClhrfc~~ci~~a~r~gn~ecptcRk~l 89 (381)
T KOG0311|consen 45 ICPICLSLLKKTM------TTKECLHRFCFDCIWKALRSGNNECPTCRKKL 89 (381)
T ss_pred ccHHHHHHHHhhc------ccHHHHHHHHHHHHHHHHHhcCCCCchHHhhc
Confidence 7888887765442 12389999999999999999999999999876
No 162
>PRK06319 DNA topoisomerase I/SWI domain fusion protein; Validated
Probab=25.97 E-value=37 Score=44.48 Aligned_cols=57 Identities=23% Similarity=0.438 Sum_probs=33.0
Q ss_pred cCCccccccCCCccc---CCCCCccccCCCCCCCcchhhhHHHH-----------hhCCCCCCCcchhhccccC
Q 001413 18 VGGQVCQICGDNVGK---TVDGNPFVACDVCAFPVCRPCYEYER-----------KDGNQSCPQCKTRYKKHKG 77 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~---~~~Ge~fvaC~eC~fpvCrpCyeyer-----------keG~q~CpqCkt~Ykr~kg 77 (1082)
.....|..||..-.+ ...| .|++|. +||-|+-=...++ ......||.|+......+|
T Consensus 590 ~~~~~CP~Cg~~~L~~k~gr~G-~Fl~Cs--~yP~C~~t~~~~~~~~~~~~~~~~~~~~~~CP~Cg~~m~lK~g 660 (860)
T PRK06319 590 VTEIDCPKCHKGKLVKIWAKNR-YFYGCS--EYPECDYKTSEEELTFNKEDYAEDTPWDSPCPLCGGEMKVRHG 660 (860)
T ss_pred ccCcccCCCCCcceeEEecCCC-ceeecc--CCccccccCCcccccccccccccccccCCcCccCCCeeEEecC
Confidence 345689999864222 2345 599994 5777742111111 1225689999876655443
No 163
>PRK03681 hypA hydrogenase nickel incorporation protein; Validated
Probab=25.72 E-value=21 Score=35.39 Aligned_cols=26 Identities=23% Similarity=0.576 Sum_probs=16.3
Q ss_pred ccCCCCCCCcchhhhHHHHhhCC-CCCCCcchhh
Q 001413 40 VACDVCAFPVCRPCYEYERKDGN-QSCPQCKTRY 72 (1082)
Q Consensus 40 vaC~eC~fpvCrpCyeyerkeG~-q~CpqCkt~Y 72 (1082)
.-|+.|+ ++++..+-. -.||+|+.+=
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~~CP~Cgs~~ 97 (114)
T PRK03681 71 CWCETCQ-------QYVTLLTQRVRRCPQCHGDM 97 (114)
T ss_pred EEcccCC-------CeeecCCccCCcCcCcCCCC
Confidence 4477776 245544443 5699999764
No 164
>PRK14873 primosome assembly protein PriA; Provisional
Probab=25.66 E-value=42 Score=42.79 Aligned_cols=11 Identities=27% Similarity=0.899 Sum_probs=6.7
Q ss_pred CCCCCCcchhh
Q 001413 62 NQSCPQCKTRY 72 (1082)
Q Consensus 62 ~q~CpqCkt~Y 72 (1082)
...||.|+...
T Consensus 422 p~~Cp~Cgs~~ 432 (665)
T PRK14873 422 DWRCPRCGSDR 432 (665)
T ss_pred CccCCCCcCCc
Confidence 45677776553
No 165
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.58 E-value=25 Score=31.54 Aligned_cols=17 Identities=41% Similarity=1.015 Sum_probs=14.6
Q ss_pred HhhCCCCCCCcchhhcc
Q 001413 58 RKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 58 rkeG~q~CpqCkt~Ykr 74 (1082)
-++|.-.||=|.|+||-
T Consensus 44 g~~gev~CPYC~t~y~l 60 (62)
T COG4391 44 GDEGEVVCPYCSTRYRL 60 (62)
T ss_pred CCCCcEecCccccEEEe
Confidence 36888999999999974
No 166
>PF08274 PhnA_Zn_Ribbon: PhnA Zinc-Ribbon ; InterPro: IPR013987 The PhnA protein family includes the uncharacterised Escherichia coli protein PhnA and its homologues. The E. coli phnA gene is part of a large operon associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage []. The protein is not related to the characterised phosphonoacetate hydrolase designated PhnA []. This entry represents the N-terminal domain of PhnA, which is predicted to form a zinc-ribbon.; PDB: 2AKL_A.
Probab=24.88 E-value=24 Score=27.34 Aligned_cols=24 Identities=33% Similarity=0.858 Sum_probs=11.4
Q ss_pred cccccCCCcccCCCCCccccCCCCCC
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAF 47 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~f 47 (1082)
.|..|+.+-.. +||..|| |.+|++
T Consensus 4 ~Cp~C~se~~y-~D~~~~v-Cp~C~~ 27 (30)
T PF08274_consen 4 KCPLCGSEYTY-EDGELLV-CPECGH 27 (30)
T ss_dssp --TTT-----E-E-SSSEE-ETTTTE
T ss_pred CCCCCCCccee-ccCCEEe-CCcccc
Confidence 57778877555 6777665 778774
No 167
>PF12773 DZR: Double zinc ribbon
Probab=24.59 E-value=53 Score=27.30 Aligned_cols=12 Identities=25% Similarity=0.794 Sum_probs=6.9
Q ss_pred CccccccCCCcc
Q 001413 20 GQVCQICGDNVG 31 (1082)
Q Consensus 20 ~~~CqiCgd~vg 31 (1082)
...|..||-.+.
T Consensus 12 ~~fC~~CG~~l~ 23 (50)
T PF12773_consen 12 AKFCPHCGTPLP 23 (50)
T ss_pred ccCChhhcCChh
Confidence 445666666654
No 168
>TIGR02556 cas_TM1802 CRISPR-associated protein, TM1802 family. This minor cas protein is found in CRISPR/cas regions of at least five prokaryotic genomes: Methanosarcina mazei, Sulfurihydrogenibium azorense, Thermotoga maritima, Carboxydothermus hydrogenoformans, and Dictyoglomus thermophilum, the first of which is archaeal while the rest are bacterial.
Probab=24.23 E-value=50 Score=41.21 Aligned_cols=41 Identities=29% Similarity=0.613 Sum_probs=24.5
Q ss_pred CccccccCCCcccCCC----------CCcccc--CCCCCCCcchhhhHHHHhhC
Q 001413 20 GQVCQICGDNVGKTVD----------GNPFVA--CDVCAFPVCRPCYEYERKDG 61 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~----------Ge~fva--C~eC~fpvCrpCyeyerkeG 61 (1082)
..+|.|||.+--++.+ =.-|++ =.-=.||||+.||.+ ...|
T Consensus 170 ~g~C~iCg~~~~~v~~~~~fKfyT~DK~gf~sgk~~~knfpIC~eC~~~-l~~G 222 (555)
T TIGR02556 170 SGTCHLCGERSDITYDSFVYKFYTTDKPGFSSDKGFSKNFSICRDCYKD-VIYG 222 (555)
T ss_pred ceEEeccCCCCceeccceeeeeeecCCCcccCCccccccCchhHHHHHH-HHHH
Confidence 5899999997332222 112333 112379999999954 3444
No 169
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=24.17 E-value=82 Score=36.46 Aligned_cols=59 Identities=20% Similarity=0.265 Sum_probs=36.1
Q ss_pred cccchhhhHhhhhhccCCCCCCCcceeEEEecCCCCCCCHHHHHHHHHHHHcCCCCC--CCcEEEEecCCCc
Q 001413 329 VNRETYLDRLSLRYEREGEPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPV--DKVSCYVSDDGAA 398 (1082)
Q Consensus 329 v~R~~~~drL~~r~~~~~~~~~lp~VDvfV~T~dp~kEpp~v~~nTvls~la~DYP~--~kl~~yvsDDG~~ 398 (1082)
++|-..++.|..++. ..-+|.|||+-.| ...+...+..++.-..|. +++++.+.=+...
T Consensus 10 ~drL~~l~~l~~~W~------GPiSvAvf~~~~~-----~~~~~~~~~~~~~~~~~~~~~~v~~H~v~~~~~ 70 (317)
T PF13896_consen 10 VDRLDHLEELCERWD------GPISVAVFVPGPD-----AKQALDAISYLLRCCCPRVRKNVTFHLVFPNSH 70 (317)
T ss_pred HHHHHHHHHHHHhCC------CCEEEEEEecchh-----HHHHHHHHHHHHHhcCHHhHhhEEEEEEeeccc
Confidence 344455666666764 2347999999976 344556666666666664 4666665544433
No 170
>PRK15103 paraquat-inducible membrane protein A; Provisional
Probab=24.13 E-value=34 Score=41.20 Aligned_cols=33 Identities=24% Similarity=0.636 Sum_probs=22.7
Q ss_pred ccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 40 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 40 vaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
++|++|+--+..|=- +..+...||+|+++-.|+
T Consensus 11 ~~C~~Cd~l~~~~~l---~~g~~a~CpRCg~~L~~~ 43 (419)
T PRK15103 11 ILCPQCDMLVALPRL---EHGQKAACPRCGTTLTVR 43 (419)
T ss_pred ccCCCCCceeecCCC---CCCCeeECCCCCCCCcCC
Confidence 889999987554311 123345799999998766
No 171
>KOG2857 consensus Predicted MYND Zn-finger protein/hormone receptor interactor [Transcription]
Probab=24.13 E-value=40 Score=34.85 Aligned_cols=45 Identities=31% Similarity=0.782 Sum_probs=33.4
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCcch-hhhHHHHhhCCCCCCCcchhhcccc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPVCR-PCYEYERKDGNQSCPQCKTRYKKHK 76 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCr-pCyeyerkeG~q~CpqCkt~Ykr~k 76 (1082)
.++|-||-..+ .---|.-|.||-|. +||.-- +.=|||+|+=+..+
T Consensus 5 t~tC~ic~e~~-------~KYKCpkC~vPYCSl~CfKiH-----k~tPq~~~ve~~~t 50 (157)
T KOG2857|consen 5 TTTCVICLESE-------IKYKCPKCSVPYCSLPCFKIH-----KSTPQCETVEDNNT 50 (157)
T ss_pred eeeehhhhcch-------hhccCCCCCCccccchhhhhc-----cCCccccccCCccc
Confidence 46889997754 23679999999996 899543 33799999876554
No 172
>PTZ00293 thymidine kinase; Provisional
Probab=23.74 E-value=33 Score=37.70 Aligned_cols=35 Identities=20% Similarity=0.586 Sum_probs=22.5
Q ss_pred ccccccCCCcccC----CCCCc-cccCCCCCCCcchhhhH
Q 001413 21 QVCQICGDNVGKT----VDGNP-FVACDVCAFPVCRPCYE 55 (1082)
Q Consensus 21 ~~CqiCgd~vg~~----~~Ge~-fvaC~eC~fpvCrpCye 55 (1082)
.+|..||.+.-.| ++|+. .+-=+|=--|+||.||+
T Consensus 138 aiC~~CG~~A~~t~R~~~~~~~v~IGg~e~Y~a~CR~c~~ 177 (211)
T PTZ00293 138 AVCMFCGKEASFSKRIVQSEQIELIGGEDKYIATCRKCFR 177 (211)
T ss_pred eEchhhCCcceeEEEEcCCCCEEEECCcccEEehhhhhhh
Confidence 5899999884432 33443 23323444789999995
No 173
>TIGR00100 hypA hydrogenase nickel insertion protein HypA. In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.
Probab=23.69 E-value=28 Score=34.54 Aligned_cols=28 Identities=21% Similarity=0.525 Sum_probs=18.0
Q ss_pred ccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhcc
Q 001413 40 VACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKK 74 (1082)
Q Consensus 40 vaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr 74 (1082)
.-|+.|+ ++++..+-...||+|+.+=.+
T Consensus 71 ~~C~~Cg-------~~~~~~~~~~~CP~Cgs~~~~ 98 (115)
T TIGR00100 71 CECEDCS-------EEVSPEIDLYRCPKCHGIMLQ 98 (115)
T ss_pred EEcccCC-------CEEecCCcCccCcCCcCCCcE
Confidence 4576666 445554545779999976433
No 174
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=23.36 E-value=41 Score=35.99 Aligned_cols=43 Identities=28% Similarity=0.689 Sum_probs=35.6
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcc
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 69 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCk 69 (1082)
.--.|.||-+..-.. ....|+--.||.|-+.-.. +.-.||.|+
T Consensus 12 ~~~~C~iC~~~~~~p-------~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr 54 (386)
T KOG2177|consen 12 EELTCPICLEYFREP-------VLLPCGHNFCRACLTRSWE-GPLSCPVCR 54 (386)
T ss_pred ccccChhhHHHhhcC-------ccccccchHhHHHHHHhcC-CCcCCcccC
Confidence 445899999886333 6667899999999988877 889999999
No 175
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=23.23 E-value=64 Score=35.71 Aligned_cols=80 Identities=19% Similarity=0.224 Sum_probs=53.4
Q ss_pred hccchHHHHHHHhhhcCCCCCCcchhhHHHHHHHhhccccccccccccccccccccccchHHHHHHHHHCCCEEEEeCCC
Q 001413 723 RFGQSAVFVASTLMENGGVPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPK 802 (1082)
Q Consensus 723 ~fG~s~~f~~Sal~e~GG~p~~~~~~~~~~eai~v~sC~YE~~T~WGkevGW~ygsVTEDi~Tg~rLh~~GWrsvY~~p~ 802 (1082)
.+|....+.++.+..++|++. ..| || | .||-+++.||..+|.+.......
T Consensus 111 ~~Gg~~~~~k~~f~~VNGf~n----------------------~f~----GW--G--gEDdd~~~Rl~~~g~~~~r~~~~ 160 (219)
T cd00899 111 YFGGVLALTREQFRKVNGFSN----------------------AYW----GW--G--GEDDDLYNRIKAAGLKITRPSGD 160 (219)
T ss_pred ccccceeeEHHHHHHhCCcCC----------------------cCc----cC--C--cchHHHHHHHHHCCCeEEeccCc
Confidence 367777888888889999875 233 34 2 48999999999999987766422
Q ss_pred CC-c--c-------cccCCCCHHHHHHHHHHhhccchhHh
Q 001413 803 RP-A--F-------KGSAPINLSDRLNQVLRWALGSVEIL 832 (1082)
Q Consensus 803 ~a-a--f-------~G~aP~tl~~~lkQR~RWA~G~lQIl 832 (1082)
.. . + ....|.-+.....++.||+..++..+
T Consensus 161 ~~~~~hL~H~~~~r~~~N~~r~~~l~~~~~~~~~dGLnsl 200 (219)
T cd00899 161 TGRYKMIRHIHDKRNRDNPNRFALLQNSRERDHSDGLNSL 200 (219)
T ss_pred ccceeeeecCCCcccccCHHHHHHHHhhCeEeccCCccce
Confidence 11 0 0 12234445556677788887777555
No 176
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=23.17 E-value=48 Score=29.01 Aligned_cols=12 Identities=25% Similarity=0.678 Sum_probs=9.7
Q ss_pred cccccCCCcccC
Q 001413 22 VCQICGDNVGKT 33 (1082)
Q Consensus 22 ~CqiCgd~vg~~ 33 (1082)
.|..||.+|.+.
T Consensus 4 ~CP~CG~~iev~ 15 (54)
T TIGR01206 4 ECPDCGAEIELE 15 (54)
T ss_pred CCCCCCCEEecC
Confidence 688899888775
No 177
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=23.09 E-value=58 Score=36.64 Aligned_cols=58 Identities=24% Similarity=0.495 Sum_probs=43.3
Q ss_pred CccccccCCCcccCCCCCccccCCCCC-CCc--chhhhHHHHh-hCCCCCCCcchhhccccCC
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCA-FPV--CRPCYEYERK-DGNQSCPQCKTRYKKHKGS 78 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~-fpv--CrpCyeyerk-eG~q~CpqCkt~Ykr~kgs 78 (1082)
+..|.||.++......+.+-++| .|. -+. =|.|.+-... -|+-.|..|+..|......
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC-~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~ 139 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPC-SCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTK 139 (323)
T ss_pred CCcEEEEecccccccccccccCc-cccCcHHHHHHHHHHhhhccccCeeeecccccceeccee
Confidence 35899999987655444678999 662 222 4889988876 5779999999999887543
No 178
>KOG3507 consensus DNA-directed RNA polymerase, subunit RPB7.0 [Transcription]
Probab=22.91 E-value=33 Score=30.58 Aligned_cols=28 Identities=21% Similarity=0.689 Sum_probs=20.3
Q ss_pred CccccccCCCcccCCCCCccccCCCCCCCc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVCAFPV 49 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpv 49 (1082)
--+|.-||.+-.+. .|| .+-|.||||.|
T Consensus 20 iYiCgdC~~en~lk-~~D-~irCReCG~RI 47 (62)
T KOG3507|consen 20 IYICGDCGQENTLK-RGD-VIRCRECGYRI 47 (62)
T ss_pred EEEecccccccccc-CCC-cEehhhcchHH
Confidence 45888898885444 344 47899999976
No 179
>PF01155 HypA: Hydrogenase expression/synthesis hypA family; InterPro: IPR000688 Bacterial membrane-bound nickel-dependent hydrogenases requires a number of accessory proteins which are involved in their maturation. The exact role of these proteins is not yet clear, but some seem to be required for the incorporation of the nickel ions []. One of these proteins is generally known as hypA. It is a protein of about 12 to 14 kDa that contains, in its C-terminal region, four conserved cysteines that form a zinc-finger like motif. Escherichia coli has two proteins that belong to this family, hypA and hybF. A homologue, MJ0214, has also been found in a number of archaeal species, including the genome of Methanocaldococcus jannaschii (Methanococcus jannaschii).; GO: 0016151 nickel ion binding, 0006464 protein modification process; PDB: 2KDX_A 3A44_D 3A43_B.
Probab=22.84 E-value=18 Score=35.74 Aligned_cols=30 Identities=27% Similarity=0.598 Sum_probs=17.0
Q ss_pred cccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 39 FVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 39 fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
-+-|+.|+. +|+..+..-.||+|+.+..+.
T Consensus 70 ~~~C~~Cg~-------~~~~~~~~~~CP~Cgs~~~~i 99 (113)
T PF01155_consen 70 RARCRDCGH-------EFEPDEFDFSCPRCGSPDVEI 99 (113)
T ss_dssp EEEETTTS--------EEECHHCCHH-SSSSSS-EEE
T ss_pred cEECCCCCC-------EEecCCCCCCCcCCcCCCcEE
Confidence 355777764 344444445699999986543
No 180
>KOG2824 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.78 E-value=47 Score=37.85 Aligned_cols=44 Identities=34% Similarity=0.778 Sum_probs=25.3
Q ss_pred ccCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcc
Q 001413 17 NVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCK 69 (1082)
Q Consensus 17 ~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCk 69 (1082)
+..+..|.-||+- -|++|-.|.= -||-=++.|.+++-+-|+.|+
T Consensus 226 ~~~~~~C~~CGg~--------rFlpC~~C~G-S~kv~~~~~~~~~~~rC~~CN 269 (281)
T KOG2824|consen 226 CEGGGVCESCGGA--------RFLPCSNCHG-SCKVHEEEEDDGGVLRCLECN 269 (281)
T ss_pred CCCCCcCCCcCCc--------ceEecCCCCC-ceeeeeeccCCCcEEECcccC
Confidence 5566899999854 5899988841 122222233444444455544
No 181
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=22.57 E-value=45 Score=44.92 Aligned_cols=48 Identities=23% Similarity=0.619 Sum_probs=30.3
Q ss_pred ccccccCCCcccCCCCCccccCCCCCCCc-----chhhhHHH--HhhCCCCCCCcchhhccc
Q 001413 21 QVCQICGDNVGKTVDGNPFVACDVCAFPV-----CRPCYEYE--RKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 21 ~~CqiCgd~vg~~~~Ge~fvaC~eC~fpv-----CrpCyeye--rkeG~q~CpqCkt~Ykr~ 75 (1082)
..|.-||..+-. .-|.+||-+. |..|=-.- -..++..||.|+++-...
T Consensus 668 rkCPkCG~~t~~-------~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~~ 722 (1337)
T PRK14714 668 RRCPSCGTETYE-------NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTPY 722 (1337)
T ss_pred EECCCCCCcccc-------ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCccccc
Confidence 478888886421 2688888664 77775321 112355799999876543
No 182
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=22.48 E-value=37 Score=35.25 Aligned_cols=43 Identities=37% Similarity=0.872 Sum_probs=25.3
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHH-HhhCCCCCCCcch
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYE-RKDGNQSCPQCKT 70 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeye-rkeG~q~CpqCkt 70 (1082)
.+..|.-||+ .-||+|.+|.= -|+-=.+.. ...+-..||.|++
T Consensus 98 ~~~~C~~Cgg--------~rfv~C~~C~G-s~k~~~~~~~~~~~~~rC~~Cne 141 (147)
T cd03031 98 GGGVCEGCGG--------ARFVPCSECNG-SCKVFAENATAAGGFLRCPECNE 141 (147)
T ss_pred CCCCCCCCCC--------cCeEECCCCCC-cceEEeccCcccccEEECCCCCc
Confidence 4557888984 46999988841 122211110 1234578999985
No 183
>PRK14890 putative Zn-ribbon RNA-binding protein; Provisional
Probab=22.41 E-value=94 Score=27.84 Aligned_cols=50 Identities=24% Similarity=0.506 Sum_probs=35.8
Q ss_pred CCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCC-CCCCCcch
Q 001413 19 GGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGN-QSCPQCKT 70 (1082)
Q Consensus 19 ~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~-q~CpqCkt 70 (1082)
...+|.-||-.|--.+.+ .-.+|..||=-+=+=|+ .-||-++ -.||.|+-
T Consensus 6 ~~~~CtSCg~~i~~~~~~-~~F~CPnCG~~~I~RC~-~CRk~~~~Y~CP~CGF 56 (59)
T PRK14890 6 EPPKCTSCGIEIAPREKA-VKFLCPNCGEVIIYRCE-KCRKQSNPYTCPKCGF 56 (59)
T ss_pred cCccccCCCCcccCCCcc-CEeeCCCCCCeeEeech-hHHhcCCceECCCCCC
Confidence 445899999998655555 44579999877444466 5677776 57999973
No 184
>COG4707 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.34 E-value=29 Score=33.65 Aligned_cols=44 Identities=43% Similarity=0.679 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHhhccCCcccccccCC-------CCCCCCCCCCCccceeeecccCCC
Q 001413 456 KREYEEFKIRINGLVAKAQKIPEEGWVMQDG-------TPWPGNNTRDHPGMIQVFLGENGG 510 (1082)
Q Consensus 456 kreYee~k~ri~~L~~~~~~~p~e~w~m~dg-------t~w~~~~~rdhp~iiqv~l~~~g~ 510 (1082)
|-||+|+|+ + ..++|.|+|= +.|.-.+--.||.+.+-+--.+||
T Consensus 20 k~eyqel~~-------~----~~d~W~m~Dlk~k~~~~sd~tiknlL~hPrl~k~L~iengG 70 (107)
T COG4707 20 KVEYQELKE-------K----DFDGWVMMDLKEKKSNRSDWTIKNLLLHPRLKKMLSIENGG 70 (107)
T ss_pred HHHHHHHHH-------h----hhcchhhhHHHHHhcccchhHHHHHhcCchhhhheeeecCc
Confidence 569999874 2 1368999874 345544566899988887666774
No 185
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=22.26 E-value=57 Score=41.53 Aligned_cols=61 Identities=28% Similarity=0.787 Sum_probs=41.8
Q ss_pred cCCccccccCCCcccCCCCC---ccccCCCCC--------------------CCcchhhhH-HH----Hh--hCCCCCCC
Q 001413 18 VGGQVCQICGDNVGKTVDGN---PFVACDVCA--------------------FPVCRPCYE-YE----RK--DGNQSCPQ 67 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~~Ge---~fvaC~eC~--------------------fpvCrpCye-ye----rk--eG~q~Cpq 67 (1082)
....+|.-|=.++---.+=. +|..|-.|| ||.|-.|-+ |+ || --.-+||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 45568999999974333322 799999994 999999974 43 33 22369999
Q ss_pred cchhh--ccccCC
Q 001413 68 CKTRY--KKHKGS 78 (1082)
Q Consensus 68 Ckt~Y--kr~kgs 78 (1082)
|+-.| ++++|-
T Consensus 179 CGP~~~l~~~~g~ 191 (750)
T COG0068 179 CGPHLFLVNHDGE 191 (750)
T ss_pred cCCCeEEEcCCCc
Confidence 99755 444443
No 186
>TIGR00155 pqiA_fam integral membrane protein, PqiA family. This family consists of uncharacterized predicted integral membrane proteins found, so far, only in the Proteobacteria. Of two members in E. coli, one is induced by paraquat and is designated PqiA, paraquat-inducible protein A.
Probab=22.25 E-value=49 Score=39.63 Aligned_cols=35 Identities=23% Similarity=0.586 Sum_probs=23.3
Q ss_pred CccccCCCCCCCcchhhhHHHHh-hCCCCCCCcchhhccc
Q 001413 37 NPFVACDVCAFPVCRPCYEYERK-DGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 37 e~fvaC~eC~fpvCrpCyeyerk-eG~q~CpqCkt~Ykr~ 75 (1082)
+..++|+||+--+=+| ..+ .....||+|++.-.|+
T Consensus 11 ~~~~~C~~Cd~l~~~~----~l~~g~~a~CpRCg~~L~~~ 46 (403)
T TIGR00155 11 AKHILCSQCDMLVALP----RIESGQKAACPRCGTTLTVG 46 (403)
T ss_pred CCeeeCCCCCCccccc----CCCCCCeeECCCCCCCCcCC
Confidence 3368899998764333 112 3345799999998765
No 187
>PF09623 Cas_NE0113: CRISPR-associated protein NE0113 (Cas_NE0113); InterPro: IPR019092 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a Cas protein family found in both bacteria and arachaea. The function of these proteins is unknown.
Probab=22.09 E-value=4.7e+02 Score=29.18 Aligned_cols=60 Identities=22% Similarity=0.414 Sum_probs=45.1
Q ss_pred EEEecCCCCCCCHHHHHHHHHHHHcCCCCCCCcEEEEecCCCchhhHHHhhhhHHHhhhhhhhhhhcCC
Q 001413 356 IFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNI 424 (1082)
Q Consensus 356 vfV~T~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~i 424 (1082)
|+|+|-. ..|-|+-.|+.++.+-.++.+.+.+.=-.||...+...-| .-.++ -||+.|+.
T Consensus 4 iLlatlG---~sPqVVTETL~aL~~~g~~p~EV~vitT~~~~~~~~~~ll--~g~~~----~l~~~y~~ 63 (224)
T PF09623_consen 4 ILLATLG---TSPQVVTETLYALAQQGEIPDEVHVITTRDGAVRAALRLL--DGGLQ----RLCQDYYL 63 (224)
T ss_pred EEEEecC---CCchHHHHHHHHHHcCCCCCCEEEEEECCChHHHHHHHHH--HHHHH----HHHHhhcC
Confidence 6888887 7788999999999999999999888888888776544433 00123 38888765
No 188
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=21.65 E-value=35 Score=27.28 Aligned_cols=11 Identities=45% Similarity=1.440 Sum_probs=9.5
Q ss_pred CCCCcchhhcc
Q 001413 64 SCPQCKTRYKK 74 (1082)
Q Consensus 64 ~CpqCkt~Ykr 74 (1082)
.||.|++.|+-
T Consensus 4 ~CP~C~~~f~v 14 (37)
T PF13719_consen 4 TCPNCQTRFRV 14 (37)
T ss_pred ECCCCCceEEc
Confidence 59999999964
No 189
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=21.36 E-value=5.3e+02 Score=27.92 Aligned_cols=25 Identities=12% Similarity=0.260 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc
Q 001413 981 LIPPTTLLVINLVGVVAGVSYAINS 1005 (1082)
Q Consensus 981 liP~~~LlilnLvaiv~gi~r~i~~ 1005 (1082)
++.-..|+++.+.+++.|+...+..
T Consensus 81 ~~ld~~L~~~~if~~~~gi~~~f~~ 105 (206)
T PF06570_consen 81 MALDNSLLFFGIFSLLFGIMGFFSP 105 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456667778888888888877644
No 190
>PRK06393 rpoE DNA-directed RNA polymerase subunit E''; Validated
Probab=21.16 E-value=45 Score=30.25 Aligned_cols=23 Identities=22% Similarity=0.556 Sum_probs=16.9
Q ss_pred ccccCCCCCCCcchhhhHHHHhhCCCCCCCcchh
Q 001413 38 PFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTR 71 (1082)
Q Consensus 38 ~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~ 71 (1082)
.|.||.+|.+-+ ++ +.||-|+..
T Consensus 4 ~~~AC~~C~~i~----------~~-~~Cp~Cgs~ 26 (64)
T PRK06393 4 QYRACKKCKRLT----------PE-KTCPVHGDE 26 (64)
T ss_pred hhhhHhhCCccc----------CC-CcCCCCCCC
Confidence 467888888776 23 499999874
No 191
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=20.91 E-value=1.1e+02 Score=26.08 Aligned_cols=45 Identities=31% Similarity=0.652 Sum_probs=28.0
Q ss_pred cccccCCCcccCCCCCccccCCCCCC---CcchhhhHHHHh-hCCCCCCCcc
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAF---PVCRPCYEYERK-DGNQSCPQCK 69 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~f---pvCrpCyeyerk-eG~q~CpqCk 69 (1082)
+|.||-+ +-+++..+..+| .|.- -|=+.|.+.=.. .++..||.|+
T Consensus 1 ~CrIC~~--~~~~~~~l~~PC-~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHD--EGDEGDPLVSPC-RCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCC--CCCCCCeeEecc-ccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 5899988 334444457778 4542 144567654443 4567899996
No 192
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=20.77 E-value=29 Score=30.44 Aligned_cols=17 Identities=29% Similarity=0.800 Sum_probs=13.8
Q ss_pred hhCCCCCCCcchhhccc
Q 001413 59 KDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 59 keG~q~CpqCkt~Ykr~ 75 (1082)
+|.--+||.|+++|.|-
T Consensus 18 ~dDiVvCp~CgapyHR~ 34 (54)
T PF14446_consen 18 GDDIVVCPECGAPYHRD 34 (54)
T ss_pred CCCEEECCCCCCcccHH
Confidence 45557899999999873
No 193
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=20.77 E-value=45 Score=26.78 Aligned_cols=27 Identities=33% Similarity=0.694 Sum_probs=18.7
Q ss_pred CCcc--ccccCCCcccCCCCCccccCCCCCC
Q 001413 19 GGQV--CQICGDNVGKTVDGNPFVACDVCAF 47 (1082)
Q Consensus 19 ~~~~--CqiCgd~vg~~~~Ge~fvaC~eC~f 47 (1082)
.+.. |.+||.......||- .-|.+|+-
T Consensus 5 ~~~~~~C~~C~~~~~~~~dG~--~yC~~cG~ 33 (36)
T PF11781_consen 5 RGPNEPCPVCGSRWFYSDDGF--YYCDRCGH 33 (36)
T ss_pred ccCCCcCCCCCCeEeEccCCE--EEhhhCce
Confidence 3444 888888877777775 44777763
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=20.74 E-value=42 Score=42.47 Aligned_cols=47 Identities=32% Similarity=0.754 Sum_probs=32.0
Q ss_pred CccccccCCCcccCCCCCccccCCCC--CCCcchh----hhHHHHhhCCCCCCCcchhhccc
Q 001413 20 GQVCQICGDNVGKTVDGNPFVACDVC--AFPVCRP----CYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 20 ~~~CqiCgd~vg~~~~Ge~fvaC~eC--~fpvCrp----CyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
---|.+||.+|-- --..|.|| .||+|-. =-+|- --.||.||-+-..|
T Consensus 1117 ~vdc~~cg~~i~~-----~~~~c~ec~~kfP~CiasG~pIt~~~----fWlC~~CkH~a~~~ 1169 (1189)
T KOG2041|consen 1117 KVDCSVCGAKIDP-----YDLQCSECQTKFPVCIASGRPITDNI----FWLCPRCKHRAHQH 1169 (1189)
T ss_pred ceeeeecCCcCCc-----cCCCChhhcCcCceeeccCCccccce----EEEccccccccccc
Confidence 3479999998732 23679999 7999943 22222 24799999776544
No 195
>COG3357 Predicted transcriptional regulator containing an HTH domain fused to a Zn-ribbon [Transcription]
Probab=20.71 E-value=36 Score=32.81 Aligned_cols=10 Identities=40% Similarity=1.374 Sum_probs=7.9
Q ss_pred CCCCCcchhh
Q 001413 63 QSCPQCKTRY 72 (1082)
Q Consensus 63 q~CpqCkt~Y 72 (1082)
--||.||...
T Consensus 77 SRCP~CKSE~ 86 (97)
T COG3357 77 SRCPKCKSEW 86 (97)
T ss_pred ccCCcchhhc
Confidence 5799999754
No 196
>KOG4217 consensus Nuclear receptors of the nerve growth factor-induced protein B type [Transcription]
Probab=20.62 E-value=51 Score=39.97 Aligned_cols=33 Identities=36% Similarity=0.899 Sum_probs=22.7
Q ss_pred cCCccccccCCCcccCCCCCccccCCCCCCCcchhhhHHHHhhCCCCCCCcchhhccc
Q 001413 18 VGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKH 75 (1082)
Q Consensus 18 ~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~ 75 (1082)
.+.+.|.+|||+ .||-. -|-.-|-+||-=|||.
T Consensus 267 ~~e~~CAVCgDn----------AaCqH---------------YGvRTCEGCKGFFKRT 299 (605)
T KOG4217|consen 267 SAEGLCAVCGDN----------AACQH---------------YGVRTCEGCKGFFKRT 299 (605)
T ss_pred CccceeeecCCh----------HHhhh---------------cCccccccchHHHHHH
Confidence 346799999998 46632 3556677777777764
No 197
>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional
Probab=20.60 E-value=38 Score=34.54 Aligned_cols=12 Identities=33% Similarity=0.930 Sum_probs=8.8
Q ss_pred hCCCCCCCcchh
Q 001413 60 DGNQSCPQCKTR 71 (1082)
Q Consensus 60 eG~q~CpqCkt~ 71 (1082)
+..-.||+|+.+
T Consensus 105 ~~~~~CP~Cgs~ 116 (135)
T PRK03824 105 HAFLKCPKCGSR 116 (135)
T ss_pred ccCcCCcCCCCC
Confidence 344569999976
No 198
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=20.58 E-value=38 Score=27.04 Aligned_cols=11 Identities=36% Similarity=1.346 Sum_probs=9.3
Q ss_pred CCCCcchhhcc
Q 001413 64 SCPQCKTRYKK 74 (1082)
Q Consensus 64 ~CpqCkt~Ykr 74 (1082)
.||+|+++|.-
T Consensus 4 ~Cp~C~~~y~i 14 (36)
T PF13717_consen 4 TCPNCQAKYEI 14 (36)
T ss_pred ECCCCCCEEeC
Confidence 59999999943
No 199
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=20.58 E-value=70 Score=26.52 Aligned_cols=29 Identities=28% Similarity=0.809 Sum_probs=22.9
Q ss_pred cccccCCCcccCCCCCccccCCCC-CCCcchhhhH
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVC-AFPVCRPCYE 55 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC-~fpvCrpCye 55 (1082)
.|..|+..| .| ....|.+| .|-+|..||.
T Consensus 2 ~Cd~C~~~i----~G-~ry~C~~C~d~dLC~~C~~ 31 (43)
T cd02340 2 ICDGCQGPI----VG-VRYKCLVCPDYDLCESCEA 31 (43)
T ss_pred CCCCCCCcC----cC-CeEECCCCCCccchHHhhC
Confidence 588888743 24 46789999 7999999994
No 200
>KOG3103 consensus Rab GTPase interacting factor, Golgi membrane protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.44 E-value=3.8e+02 Score=30.28 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=44.3
Q ss_pred HHHHHHHcCCCCCeeecCCCCCCCCCccceeecccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 001413 943 QGLLKVLAGIDTNFTVTSKASDEDGDFTELYMFKWTTLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFW 1022 (1082)
Q Consensus 943 ~aLlk~L~g~~~~F~VTpKg~~~d~~~~~ly~f~ws~LliP~~~LlilnLvaiv~gi~r~i~~~~~~w~~l~g~l~~~~W 1022 (1082)
-.++++++.+...|.-|...-. . -++|.++| ..+++++++...+ ..+..+++++|
T Consensus 156 y~L~nlm~~~nv~f~~~aSVlG------------Y--cLLPlvvl---S~v~i~~~~~g~v--------g~il~~~~v~W 210 (249)
T KOG3103|consen 156 YFLLNLMSNKNVSFGCVASVLG------------Y--CLLPLVVL---SFVNIFVGLQGTV--------GYILSALFVLW 210 (249)
T ss_pred HHHHHHHhhcCcceeeehHHHH------------H--HHHHHHHH---HHHHHHHhccchH--------HHHHHHHHHHH
Confidence 3456666656677765543321 1 25675444 4555555533222 13456778888
Q ss_pred HHHHHHHHHHHHhcCCCCCchhH
Q 001413 1023 VIVHLYPFLKGLMGRQNRTPTIV 1045 (1082)
Q Consensus 1023 vv~nl~pflkgL~gR~~~~P~~v 1045 (1082)
.-+-..-++.+..+-++..+.|.
T Consensus 211 ~t~aaS~lfv~al~~~~~rlLia 233 (249)
T KOG3103|consen 211 CTYAASKLFVSALSMENQRLLVA 233 (249)
T ss_pred HHHHHHHHHHHHhhccccchhhh
Confidence 88777777776666666666543
No 201
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=20.35 E-value=57 Score=24.84 Aligned_cols=28 Identities=32% Similarity=0.898 Sum_probs=21.2
Q ss_pred cccccCCCcccCCCCCccccCCCCCCCcchhh
Q 001413 22 VCQICGDNVGKTVDGNPFVACDVCAFPVCRPC 53 (1082)
Q Consensus 22 ~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpC 53 (1082)
.|.+|+.++ +|..|--|.+|.|-+..-|
T Consensus 2 ~C~~C~~~~----~~~~~Y~C~~c~f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRRKI----DGFYFYHCSECCFTLHVRC 29 (30)
T ss_pred CCCCCCCCc----CCCEeEEeCCCCCeEcCcc
Confidence 589998775 3433889999999887655
No 202
>PF09526 DUF2387: Probable metal-binding protein (DUF2387); InterPro: IPR012658 Members of this family are small proteins, about 70 residues in length, with a basic triplet near the N terminus and a probable metal-binding motif CPXCX(18)CXXC. Members are found in various proteobacteria.
Probab=20.31 E-value=52 Score=30.29 Aligned_cols=31 Identities=29% Similarity=0.784 Sum_probs=24.5
Q ss_pred cCCccccccC--CCccc-CCCCCccccCCCCCCC
Q 001413 18 VGGQVCQICG--DNVGK-TVDGNPFVACDVCAFP 48 (1082)
Q Consensus 18 ~~~~~CqiCg--d~vg~-~~~Ge~fvaC~eC~fp 48 (1082)
..|-+|.-|+ |.|.+ .+||...+-|-+|||-
T Consensus 6 IAGa~CP~C~~~D~i~~~~e~~ve~vECV~CGy~ 39 (71)
T PF09526_consen 6 IAGAVCPKCQAMDTIMMWRENGVEYVECVECGYT 39 (71)
T ss_pred ecCccCCCCcCccEEEEEEeCCceEEEecCCCCe
Confidence 4577999998 44544 5788999999999984
Done!