Query 001413
Match_columns 1082
No_of_seqs 373 out of 2000
Neff 5.0
Searched_HMMs 29240
Date Tue Mar 26 17:06:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/001413.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_713-717//hhsearch_pdb/001413hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4hg6_A Cellulose synthase subu 1.0 1 1 454.5 50.4 495 274-1039 66-578 (802)
2 1weo_A Cellulose synthase, cat 1.0 1 1 313.6 8.1 85 11-96 7-91 (93)
3 2z86_A Chondroitin synthase; G 1.0 1 1 130.8 17.5 129 348-601 89-218 (625)
4 2d7i_A Polypeptide N-acetylgal 1.0 1 1 121.0 16.8 116 348-582 108-224 (570)
5 1xhb_A Polypeptide N-acetylgal 1.0 1 1 119.1 17.3 117 347-582 24-143 (472)
6 2ffu_A Ppgalnact-2, polypeptid 1.0 1 1 117.8 12.9 113 348-582 62-174 (501)
7 2z86_A Chondroitin synthase; G 1.0 1 1 113.4 12.8 126 348-600 371-497 (625)
8 1qg8_A Protein (spore coat pol 1.0 1 1 111.5 7.6 120 352-598 1-129 (255)
9 3l7i_A Teichoic acid biosynthe 1.0 1 1 106.7 0.0 118 351-593 1-118 (729)
10 3bcv_A Putative glycosyltransf 1.0 1 1 103.2 13.6 111 349-582 2-112 (240)
No 1
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=1.00 E-value=1 Score=454.54 Aligned_cols=495 Identities=22% Similarity=0.341 Sum_probs=377.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHH-----HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCC
Q ss_conf 47999999999999998763046403-----6899999999999999999984205544235510566865421158999
Q 001413 274 YRMVIFLRLIILGIFLYYRIKNPVHN-----AIALWLISVICEIWFAISWIFDQFPKWLPVNRETYLDRLSLRYEREGEP 348 (1082)
Q Consensus 274 yR~~i~~~l~~l~~yl~wRi~~~~~~-----a~~lWl~~~~~Ei~fa~~wil~q~~kw~Pv~R~~~~drL~~r~e~~~~~ 348 (1082)
..+++++.+++.++|++||++.+++. ..++|+.++++|+++.+.|++..+..|.|..|...++ ..+
T Consensus 66 ~~~~~~~~~~~~~~y~~wr~~~tl~~~~~~~~~~~~~~ll~~~~~~~~~~l~~~~~~~~~~~r~~~~~---------~~~ 136 (802)
T 4hg6_A 66 RFLLLSAASMLVMRYWFWRLFETLPPPALDASFLFALLLFAVETFSISIFFLNGFLSADPTDRPFPRP---------LQP 136 (802)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCCCC---------CCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------CCC
T ss_conf 78999999999999999986600677530589999999999999999999999999836567888898---------985
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99962059993689999997999999999883979999848999069983142788654488743212244421788899
Q 001413 349 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 428 (1082)
Q Consensus 349 ~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepRa 428 (1082)
+++|.|+|+||||| |++.++.+|+.|++++|||.+++.++|.|||.++.|.+.
T Consensus 137 ~~~P~VSViIPtyN---e~~~lL~~~L~Sl~~q~yp~~~~eIiVVDDgStD~T~~~------------------------ 189 (802)
T 4hg6_A 137 EELPTVDILVPSYN---EPADMLSVTLAAAKNMIYPARLRTVVLCDDGGTDQRCMS------------------------ 189 (802)
T ss_dssp TTCCCEEEEEECTT---CCHHHHHHHHHHHHTSSCCTTCCEEEEESTTCHHHHHTC------------------------
T ss_pred CCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCC------------------------
T ss_conf 67984899999799---989999999999984669998289999989987642234------------------------
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 11121001232348788035999999999999999999787774205873443336899899998888942010100469
Q 001413 429 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 508 (1082)
Q Consensus 429 Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~~ 508 (1082)
..|+.+++... .++++ +.+.++
T Consensus 190 ---------------~d~~i~~~~~~---~~~~l----~~~~~~------------------------------------ 211 (802)
T 4hg6_A 190 ---------------PDPELAQKAQE---RRREL----QQLCRE------------------------------------ 211 (802)
T ss_dssp ---------------SSHHHHHHHHH---HHHHH----HHHHHH------------------------------------
T ss_pred ---------------CCHHHHHHHHH---HHHHH----HHHHHH------------------------------------
T ss_conf ---------------88789999886---66999----999985------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCCC
Q ss_conf 99788889878389997025999886750225699998601367987899944999879369999999844-28999960
Q 001413 509 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGKH 587 (1082)
Q Consensus 509 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff-~Dp~~g~~ 587 (1082)
.++.|+.|++ +++.||||+|.+++. ++++||+.+|||++ ..|++|++.+.+| .|| +
T Consensus 212 ----------~~v~~i~~~~----~~~GKa~alN~gl~~----a~gd~Il~lDaD~~-~~pd~L~~lv~~~~~dp----~ 268 (802)
T 4hg6_A 212 ----------LGVVYSTRER----NEHAKAGNMSAALER----LKGELVVVFDADHV-PSRDFLARTVGYFVEDP----D 268 (802)
T ss_dssp ----------HTCEEEECSS----CCSHHHHHHHHHHHH----CCCSEEEECCTTEE-ECTTHHHHHHHHHHHSS----S
T ss_pred ----------CCCEEEEECC----CCCCCHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----C
T ss_conf ----------6947999268----877636899999996----59999999999988-18589999999984099----8
Q ss_pred EEEEECCCCCCCCCCC-------CCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 7999048201489964-------301110013454330222367985212456201132102789999989999987544
Q 001413 588 VCYVQFPQRFDGIDRN-------DRYANRNTVFFDINLRGLDGIQGPVYVGTGCVFNRTALYGYEPPLKPKHRKPGLLSS 660 (1082)
Q Consensus 588 v~~VQ~PQ~F~nid~~-------D~y~n~~~vFfdi~~~glDg~qgp~yvGTgcvfRR~ALyG~~p~~~~~~~~~~~~~~ 660 (1082)
++.||+++.+.|.++. .++.+++..|+...+.+.+.+++++++|+++++||+++
T Consensus 269 v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al------------------- 329 (802)
T 4hg6_A 269 LFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYGKIHRGLDRWGGAFFCGSAAVLRRRAL------------------- 329 (802)
T ss_dssp CCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHHTHHHHHHHTTCCCCCSSSEEEEHHHH-------------------
T ss_pred EEEEECCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEECCCCHHHHHHHH-------------------
T ss_conf 5999656797678557654447765167899998888754764388454266403249999-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC
Q ss_conf 34788655677676688754678888999765430121100268887604677665778877506418899878664099
Q 001413 661 LFGGSRKKNSKSSKKGSDKKKSSKHVDPTVPIFSLEDIEEGVEGAGFDDEKSLLMSQMSLEKRFGQSAVFVASTLMENGG 740 (1082)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~fG~s~~f~~S~l~e~GG 740 (1082)
+++||
T Consensus 330 ---------------------------------------------------------------------------~~vGg 334 (802)
T 4hg6_A 330 ---------------------------------------------------------------------------DEAGG 334 (802)
T ss_dssp ---------------------------------------------------------------------------HHHTT
T ss_pred ---------------------------------------------------------------------------HHCCC
T ss_conf ---------------------------------------------------------------------------97088
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCHHHHHHH
Q ss_conf 99986546699998883034655556645323621354443299999998789789994789984335679799999987
Q 001413 741 VPQSATHETLLKEAIHVISCGYEDKTEWGSEIGWIYGSVTEDILTGFKMHARGWRSIYCMPKRPAFKGSAPINLSDRLNQ 820 (1082)
Q Consensus 741 ~p~~~~~~~~~~eAi~v~sC~Ye~~t~WG~evGW~ygSITEDi~Ts~rLh~~GWksvY~~p~~aaf~G~aP~tl~~~l~Q 820 (1082)
++. .+++||.+++++++.+||+++|+++. .+++.+|+++.++++|
T Consensus 335 f~~---------------------------------~~~~ED~~l~~rl~~~G~ri~~~~~~--~~~~~~p~t~~~~~~Q 379 (802)
T 4hg6_A 335 FAG---------------------------------ETITEDAETALEIHSRGWKSLYIDRA--MIAGLQPETFASFIQQ 379 (802)
T ss_dssp CCC---------------------------------SSSSHHHHHHHHHHTTTCCEEECCCC--CEEECCCCSHHHHHHH
T ss_pred CCC---------------------------------CCCCHHHHHHHHHHHCCCEEEEECCC--EEEECCCCCHHHHHHH
T ss_conf 678---------------------------------88030999999999769959993688--7996688899999999
Q ss_pred HHHHHCCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 78762110567663045211135888883441254455556656899999999999999818964554305799999999
Q 001413 821 VLRWALGSVEILFSRHCPIWYGYGGRLKFLERFAYVNTTIYPLTAIPLLMYCTLPAVCLLTNKFIMPQISNLASIVFISL 900 (1082)
Q Consensus 821 R~RWA~G~lQillsk~~PL~~g~~~~Ltl~QRL~Yl~~~lypl~sl~~liy~llPil~LltG~~iip~~s~~~~~~fi~l 900 (1082)
|.||++|.+|+++. ++|++ .+++++.+|+.|+...++++.+++.++++++|+++++++..++......++.+++..
T Consensus 380 r~RW~~G~~q~l~~-~~pl~---~~~l~~~~rl~~l~~~~~~~~~~~~li~ll~p~~~ll~~~~~~~~~~~~~~~~~lp~ 455 (802)
T 4hg6_A 380 RGRWATGMMQMLLL-KNPLF---RRGLGIAQRLCYLNSMSFWFFPLVRMMFLVAPLIYLFFGIEIFVATFEEVLAYMPGY 455 (802)
T ss_dssp HHHHHHHHHHHHHH-SCTTS---CSSCCHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHH-HCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99997008999988-59234---689989999999999999999999999999999999996787633899999999999
Q ss_pred HH-HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH-HHCCCCCCEEECCCCCCCCCCCCCEEECCCC
Q ss_conf 99-999999886430364232112342022111357999999999999-9739877805267988888775410201242
Q 001413 901 FL-SIFATGILEMRWSGVGIDEWWRNEQFWVIGGVSSHLFAVFQGLLK-VLAGIDTNFTVTSKASDEDGDFTELYMFKWT 978 (1082)
Q Consensus 901 fi-si~~~~iLe~rwsG~si~~wWrneqfW~I~~vsa~LfAvl~aLlk-~L~g~~~~F~VTpK~~~~d~~~~~ly~f~ws 978 (1082)
++ ...+...+ ..... ..|| ++.++.+ ..+ ..+.+++. .+.+++.+|+||+|+...+..+ + +
T Consensus 456 ~l~~~~~~~~~---~~~~r-~~~~-~~l~~~~----~~~-~~~~a~l~~l~~~~~~~f~VT~Kg~~~~~~~-----~-~- 518 (802)
T 4hg6_A 456 LAVSFLVQNAL---FARQR-WPLV-SEVYEVA----QAP-YLARAIVTTLLRPRSARFAVTAKDETLSENY-----I-S- 518 (802)
T ss_dssp HHHHHHHHHHH---HTTTS-CTTH-HHHHHHH----HHH-HHHHHHHHHHHSTTCCCCCCCCCCCCCSSCC-----B-C-
T ss_pred HHHHHHHHHHH---HCCCH-HHHH-HHHHHHH----HHH-HHHHHHHHHHHCCCCCCCEECCCCCCCCCCC-----H-H-
T ss_conf 99999999999---56747-9999-9999999----999-9999999999188898202779976566531-----2-2-
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---CCCC
Q ss_conf 004899999999999999999998831888875157999999999998999998871---2789
Q 001413 979 TLLIPPTTLLVINLVGVVAGVSYAINSGYQSWGPLFGKLFFAFWVIVHLYPFLKGLM---GRQN 1039 (1082)
Q Consensus 979 ~L~iP~~~LlilnLiaiv~Gi~r~i~~~~~~w~~l~g~l~~~~Wvi~nL~Pfl~gL~---gR~~ 1039 (1082)
.++.|++++++++++++++|+++....++ +..+.+++++|+++|++.+..++. +|+.
T Consensus 519 ~~~~p~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~w~~~~l~~l~~~~~~~~~~~~ 578 (802)
T 4hg6_A 519 PIYRPLLFTFLLCLSGVLATLVRWVAFPG----DRSVLLVVGGWAVLNVLLVGFALRAVAEKQQ 578 (802)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHHHHHHHHHHHHTTTBCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 68999999999999999999999960677----6342001159999999999999999745887
No 2
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=1.00 E-value=1 Score=313.55 Aligned_cols=85 Identities=60% Similarity=1.282 Sum_probs=81.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 55434565885444337775457899930038999997440126878730998788860000013698754599987788
Q 001413 11 QVKSIKNVGGQVCQICGDNVGKTVDGNPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTRYKKHKGSPAILGDREEDGD 90 (1082)
Q Consensus 11 ~~~~~~~~~~~~CqiCgd~vg~~~~Ge~fvaC~eC~fpvCrpCyeyerkeG~q~CpqCkt~Ykr~kgsprv~gd~e~e~~ 90 (1082)
++||++++++|+||||||+||+++|||+|||||||+|||||||||||||||||+|||||||||||||||||+|| |+|++
T Consensus 7 ~~kp~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~kgsp~v~GD-e~e~d 85 (93)
T 1weo_A 7 GPKPLKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRLRGSPRVEGD-EDEED 85 (93)
T ss_dssp SSSCCSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCCTTCCCCTTS-CCCCC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 88752005887261145743547789888763006773518899999852674055458762233688876666-44465
Q ss_pred CCCCCC
Q ss_conf 888767
Q 001413 91 ADDGAS 96 (1082)
Q Consensus 91 ~dd~~~ 96 (1082)
+||+++
T Consensus 86 ~dD~~~ 91 (93)
T 1weo_A 86 IDSGPS 91 (93)
T ss_dssp SCCCCS
T ss_pred CCCCCC
T ss_conf 332445
No 3
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=130.77 Aligned_cols=129 Identities=19% Similarity=0.219 Sum_probs=98.9
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99996205999368999999799999999988397999984899906998314278865448874321224442178889
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepR 427 (1082)
+..+|.|+|+|+|+| | +..+..|+.|+++.+||. .+.++|.|||.+.-|.+.+ +
T Consensus 89 ~~~~p~vsviIp~~n---~-~~~l~~~l~sl~~q~~~~-~~eiivvDd~s~d~t~~~~-------~-------------- 142 (625)
T 2z86_A 89 QLIIDGLSIVIPTYN---R-AKILAITLACLCNQKTIY-DYEVIVADDGSKENIEEIV-------R-------------- 142 (625)
T ss_dssp -CCCCCEEEEEEESS---C-HHHHHHHHHHHHTCCCSS-CEEEEEEEESCSSCHHHHH-------H--------------
T ss_pred CCCCCCEEEEEECCC---C-HHHHHHHHHHHHHHCCCC-CEEEEEEECCCCHHHHHHH-------H--------------
T ss_conf 346982799990388---5-788999999998436579-8699999679832079999-------9--------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91112100123234878803599999999999999999978777420587344333689989999888894201010046
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~ 507 (1082)
+ +.
T Consensus 143 ---------------------------------~-------~~------------------------------------- 145 (625)
T 2z86_A 143 ---------------------------------E-------FE------------------------------------- 145 (625)
T ss_dssp ---------------------------------T-------TT-------------------------------------
T ss_pred ---------------------------------H-------HH-------------------------------------
T ss_conf ---------------------------------8-------56-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCCCCC
Q ss_conf 9997888898783899970259998867502256999986013679878999449998793699999998442-899996
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DPNLGK 586 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~-Dp~~g~ 586 (1082)
.-+++.|+.+++ +.+.||+|+|.+++. +.|+||+.+|+|++ ..|++|.+.+..|. +|
T Consensus 146 ---------~~~~i~~i~~~~----~~~g~~~a~N~g~~~----a~g~~v~~lD~D~~-~~~~~l~~~~~~~~~~~---- 203 (625)
T 2z86_A 146 ---------SLLNIKYVRQKD----YGYQLCAVRNLGLRA----AKYNYVAILDCDMA-PNPLWVQSYMELLAVDD---- 203 (625)
T ss_dssp ---------TTSCEEEEEECC----CSCCHHHHHHHHHHH----CCSSEEEEECTTEE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEEECC----CCCCHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHCCC----
T ss_conf ---------317829998678----774306899999986----88478999789877-79799999999985598----
Q ss_pred CEEEEECCCCCCCCC
Q ss_conf 079990482014899
Q 001413 587 HVCYVQFPQRFDGID 601 (1082)
Q Consensus 587 ~v~~VQ~PQ~F~nid 601 (1082)
.++.|+..+.+++..
T Consensus 204 ~~~~~g~~~~~~~~~ 218 (625)
T 2z86_A 204 NVALIGPRKYIDTSK 218 (625)
T ss_dssp TEEEECCEEEECCTT
T ss_pred CEEEEEEEEECCCCC
T ss_conf 639998556516742
No 4
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=1.00 E-value=1 Score=120.95 Aligned_cols=116 Identities=20% Similarity=0.138 Sum_probs=90.9
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHH-HHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 999962059993689999997999999999883979999848999069983142-7886544887432122444217888
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEP 426 (1082)
Q Consensus 348 ~~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~lt-f~al~Eaa~FA~~WvPFCkk~~Iep 426 (1082)
+..+|.|.|.|+||| |+...+.+||.|+++..||...+.+.|.|||...-| .+.+
T Consensus 108 ~~~~P~vSVIIp~yN---e~~~~L~~~L~Sll~qt~~~~~~EIIVVDDgS~D~tl~~~l--------------------- 163 (570)
T 2d7i_A 108 LETLPNTSIIIPFHN---EGWSSLLRTVHSVLNRSPPELVAEIVLVDDFSDREHLKKPL--------------------- 163 (570)
T ss_dssp ESSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCCCGGGTHHH---------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHH---------------------
T ss_conf 888997599999789---87899999999998358745767999998999837889999---------------------
Q ss_pred CCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 99111210012323487880359999999999999999997877742058734433368998999988889420101004
Q 001413 427 RAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLG 506 (1082)
Q Consensus 427 RaPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~ 506 (1082)
+++ .+
T Consensus 164 ---------------------------------~~~-------~~----------------------------------- 168 (570)
T 2d7i_A 164 ---------------------------------EDY-------MA----------------------------------- 168 (570)
T ss_dssp ---------------------------------HHH-------HT-----------------------------------
T ss_pred ---------------------------------HHH-------HH-----------------------------------
T ss_conf ---------------------------------999-------97-----------------------------------
Q ss_pred CCCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 6999788889878389997025999886750225699998601367987899944999879369999999844289
Q 001413 507 ENGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 507 ~~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~Dp 582 (1082)
..|++.++..+++.| +++|+|.+++. +.|+||+.||+|.. ..+++|.+.+-.+.+.
T Consensus 169 ----------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~fLD~D~~-~~p~~L~~ll~~l~~~ 224 (570)
T 2d7i_A 169 ----------LFPSVRILRTKKREG-----LIRTRMLGASV----ATGDVITFLDSHCE-ANVNWLPPLLDRIARN 224 (570)
T ss_dssp ----------TSTTEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCSHHHHHHHHHC
T ss_pred ----------HCCEEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf ----------478089998998879-----89999999986----67888999759852-2403899999999848
No 5
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=1.00 E-value=1 Score=119.08 Aligned_cols=117 Identities=19% Similarity=0.145 Sum_probs=92.0
Q ss_pred CCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHH-HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 999996205999368999999799999999988397999984899906998314-2788654488743212244421788
Q 001413 347 EPSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAML-TFEALSETSEFARKWVPFCKKYNIE 425 (1082)
Q Consensus 347 ~~~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~l-tf~al~Eaa~FA~~WvPFCkk~~Ie 425 (1082)
.+..+|.|.|.|++|| |+...+..||.|+++.+||.....++|.|||...- |.+.+
T Consensus 24 ~~~~~p~vSVIIp~yN---~~~~~l~~~l~Sl~~q~~~~~~~EIIvVDd~S~d~~t~~~l-------------------- 80 (472)
T 1xhb_A 24 YPDNLPTTSVVIVFHN---EAWSTLLRTVHSVINRSPRHMIEEIVLVDDASERDFLKRPL-------------------- 80 (472)
T ss_dssp CCSCCCCEEEEEEESS---CCHHHHHHHHHHHHHSSCGGGEEEEEEEECSCCCGGGTHHH--------------------
T ss_pred CCCCCCCEEEEEEECC---CCHHHHHHHHHHHHHCCCHHHCEEEEEEECCCCCHHHHHHH--------------------
T ss_conf 7867997599999678---87899999999998659576760799997799967899999--------------------
Q ss_pred CCCCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEC
Q ss_conf 89911121001232348788035999999999999999999787774205873443336899899998888942010100
Q 001413 426 PRAPEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFL 505 (1082)
Q Consensus 426 pRaPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l 505 (1082)
+++ ++
T Consensus 81 ----------------------------------~~~-------~~---------------------------------- 85 (472)
T 1xhb_A 81 ----------------------------------ESY-------VK---------------------------------- 85 (472)
T ss_dssp ----------------------------------HHH-------HH----------------------------------
T ss_pred ----------------------------------HHH-------HH----------------------------------
T ss_conf ----------------------------------999-------98----------------------------------
Q ss_pred CCCCCCCCCCCCCC-CEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CC
Q ss_conf 46999788889878-3899970259998867502256999986013679878999449998793699999998442-89
Q 001413 506 GENGGLDAEGNELP-RLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 582 (1082)
Q Consensus 506 ~~~g~~d~~~~~lP-~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~-Dp 582 (1082)
.+| ++.++..+++.| +++|+|.+++. +.|+||+.+|+|.. ..|++|.+.+-.+. +|
T Consensus 86 -----------~~~~~v~vi~~~~n~G-----~~~a~N~g~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~~ 143 (472)
T 1xhb_A 86 -----------KLKVPVHVIRMEQRSG-----LIRARLKGAAV----SRGQVITFLDAHCE-CTAGWLEPLLARIKHDR 143 (472)
T ss_dssp -----------SSSSCEEEEECSSCCC-----HHHHHHHHHHH----CCSSEEEEEESSEE-ECTTCHHHHHHHHHHCT
T ss_pred -----------HCCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCEE-ECCCHHHHHHHHHHHCC
T ss_conf -----------7798579998898787-----69999999986----15876999889857-67347999999998399
No 6
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=1.00 E-value=1 Score=117.79 Aligned_cols=113 Identities=18% Similarity=0.125 Sum_probs=89.9
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99996205999368999999799999999988397999984899906998314278865448874321224442178889
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepR 427 (1082)
+..+|.|.|.||||| |+...+..||.|+++..||.....+.|.|||...-|.+.+
T Consensus 62 ~~~~p~vSVIIp~yN---~~~~~L~~~l~Sl~~q~~~~~~~EIIvVDDgS~D~t~~~~---------------------- 116 (501)
T 2ffu_A 62 RVDLPATSVVITFHN---EARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGAL---------------------- 116 (501)
T ss_dssp CSSCCCEEEEEEESS---CCHHHHHHHHHHHHHHSCGGGEEEEEEEECSCSCTHHHHG----------------------
T ss_pred CCCCCCEEEEEEECC---CCHHHHHHHHHHHHHHCCHHHCEEEEEEECCCCCHHHHHH----------------------
T ss_conf 867997799999696---8689999999999850866335149999789995678999----------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91112100123234878803599999999999999999978777420587344333689989999888894201010046
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~ 507 (1082)
+.
T Consensus 117 -----------------------------------------~~------------------------------------- 118 (501)
T 2ffu_A 117 -----------------------------------------LG------------------------------------- 118 (501)
T ss_dssp -----------------------------------------GG-------------------------------------
T ss_pred -----------------------------------------HH-------------------------------------
T ss_conf -----------------------------------------84-------------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 999788889878389997025999886750225699998601367987899944999879369999999844289
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~Dp 582 (1082)
..|++.|+..+++.| +++|+|.+++. ..|+||+.+|+|.. ..|++|.+.+..+.+.
T Consensus 119 ---------~~~~v~vi~~~~n~G-----~~~A~N~G~~~----A~gd~i~flD~D~~-~~p~~L~~ll~~~~~~ 174 (501)
T 2ffu_A 119 ---------KIEKVRVLRNDRREG-----LMRSRVRGADA----AQAKVLTFLDSHCE-CNEHWLEPLLERVAED 174 (501)
T ss_dssp ---------GBTTEEEEECSSCCH-----HHHHHHHHHHH----CCSSEEEECCSSEE-ECTTCHHHHHHHHHHC
T ss_pred ---------CCCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCCCHHHHHHHHHHHC
T ss_conf ---------189879998998868-----89999998986----68988999779830-6720799999999839
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=1.00 E-value=1 Score=113.44 Aligned_cols=126 Identities=21% Similarity=0.272 Sum_probs=93.7
Q ss_pred CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99996205999368999999799999999988397999984899906998314278865448874321224442178889
Q 001413 348 PSQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPR 427 (1082)
Q Consensus 348 ~~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepR 427 (1082)
....|.|.|.|+||| ++ ..+..++.|+++.+|| .+.++|.|||...-|.+.+.
T Consensus 371 ~~~~~~vsiii~~yn---~~-~~l~~~l~s~~~q~~~--~~eiivvdd~S~d~t~~~~~--------------------- 423 (625)
T 2z86_A 371 LKRVPLVSIYIPAYN---CS-KYIVRCVESALNQTIT--DLEVCICDDGSTDDTLRILQ--------------------- 423 (625)
T ss_dssp CCSSCSEEEEEEESS---CT-TTHHHHHHHHHSSSCC--SEEEEEEEESCSSSHHHHHH---------------------
T ss_pred HCCCCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCHHHHHHHH---------------------
T ss_conf 035971799995789---88-9999999999817699--82899998969864999999---------------------
Q ss_pred CCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCC
Q ss_conf 91112100123234878803599999999999999999978777420587344333689989999888894201010046
Q 001413 428 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGE 507 (1082)
Q Consensus 428 aPe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~ 507 (1082)
++ . .
T Consensus 424 ---------------------------------~~-------~---~--------------------------------- 427 (625)
T 2z86_A 424 ---------------------------------EH-------Y---A--------------------------------- 427 (625)
T ss_dssp ---------------------------------HH-------H---T---------------------------------
T ss_pred ---------------------------------HH-------H---H---------------------------------
T ss_conf ---------------------------------98-------8---5---------------------------------
Q ss_pred CCCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCCCCC
Q ss_conf 999788889878389997025999886750225699998601367987899944999879369999999844-2899996
Q 001413 508 NGGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFM-MDPNLGK 586 (1082)
Q Consensus 508 ~g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff-~Dp~~g~ 586 (1082)
..|++.++. ++.. .+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+..| .+|
T Consensus 428 ---------~~~~i~~~~-~~n~-----G~~~a~n~g~~~----a~g~~i~~ld~D~~-~~~~~l~~~~~~~~~~~---- 483 (625)
T 2z86_A 428 ---------NHPRVRFIS-QKNK-----GIGSASNTAVRL----CRGFYIGQLDSDDF-LEPDAVELCLDEFRKDL---- 483 (625)
T ss_dssp ---------TCTTEEEEE-ECCC-----CHHHHHHHHHHH----CCSSEEEECCTTCE-ECTTHHHHHHHHHHHCT----
T ss_pred ---------HCCCEEEEE-CCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC----
T ss_conf ---------499389991-7988-----989999999985----67787999889766-28359999999998479----
Q ss_pred CEEEEECCCCCCCC
Q ss_conf 07999048201489
Q 001413 587 HVCYVQFPQRFDGI 600 (1082)
Q Consensus 587 ~v~~VQ~PQ~F~ni 600 (1082)
+++.|.....+.+.
T Consensus 484 ~~~~v~~~~~~~~~ 497 (625)
T 2z86_A 484 SLACVYTTNRNIDR 497 (625)
T ss_dssp TCSEEEEEEEEECT
T ss_pred CEEEEEEEEEEECC
T ss_conf 81399820489879
No 8
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=1.00 E-value=1 Score=111.49 Aligned_cols=120 Identities=13% Similarity=0.248 Sum_probs=91.6
Q ss_pred CCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHH
Q ss_conf 62059993689999997999999999883979999848999069983142788654488743212244421788899111
Q 001413 352 AAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPEW 431 (1082)
Q Consensus 352 p~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepRaPe~ 431 (1082)
|.|.|.|||+| ++ ..+..|+.|+++.+|| .+.++|.|||...-|.+.+.+
T Consensus 1 p~vSViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiivvDd~S~d~t~~~~~~------------------------ 50 (255)
T 1qg8_A 1 PKVSVIMTSYN---KS-DYVAKSISSILSQTFS--DFELFIMDDNSNEETLNVIRP------------------------ 50 (255)
T ss_dssp CCEEEEEEESS---CT-TTHHHHHHHHHTCSCC--CEEEEEEECSCCHHHHHHHGG------------------------
T ss_pred CEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCHHHHHHHH------------------------
T ss_conf 95999997179---77-8999999999856278--649999978997108999999------------------------
Q ss_pred HHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCC
Q ss_conf 21001232348788035999999999999999999787774205873443336899899998888942010100469997
Q 001413 432 YFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGGL 511 (1082)
Q Consensus 432 YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~~g~~ 511 (1082)
+.
T Consensus 51 -------------------------------------~~----------------------------------------- 52 (255)
T 1qg8_A 51 -------------------------------------FL----------------------------------------- 52 (255)
T ss_dssp -------------------------------------GG-----------------------------------------
T ss_pred -------------------------------------HH-----------------------------------------
T ss_conf -------------------------------------86-----------------------------------------
Q ss_pred CCCCCCCCCEEEEECC--------CCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CC
Q ss_conf 8888987838999702--------59998867502256999986013679878999449998793699999998442-89
Q 001413 512 DAEGNELPRLVYVSRE--------KRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMM-DP 582 (1082)
Q Consensus 512 d~~~~~lP~lvYvsRe--------krpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~-Dp 582 (1082)
.-|++.|+..+ +.. .+++|+|.+++. ++|+||+.+|+|.+ ..|++|.+.+-.|. +|
T Consensus 53 -----~~~~i~~i~~~~~~~~~~~~n~-----G~~~a~N~gi~~----a~g~~i~~lD~Dd~-~~~~~l~~~~~~~~~~~ 117 (255)
T 1qg8_A 53 -----NDNRVRFYQSDISGVKERTEKT-----RYAALINQAIEM----AEGEYITYATDDNI-YMPDRLLKMVRELDTHP 117 (255)
T ss_dssp -----GSTTEEEEECCCCSHHHHHSSC-----HHHHHHHHHHHH----CCCSEEEEEETTEE-ECTTHHHHHHHHHHHCT
T ss_pred -----HCCCEEEEECCCCCCCCCCCCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHCC
T ss_conf -----0698899964653332221466-----789999999987----58888999689876-28279999999998589
Q ss_pred CCCCCEEEEECCCCCC
Q ss_conf 9996079990482014
Q 001413 583 NLGKHVCYVQFPQRFD 598 (1082)
Q Consensus 583 ~~g~~v~~VQ~PQ~F~ 598 (1082)
++++|.....+.
T Consensus 118 ----~~~~v~~~~~~~ 129 (255)
T 1qg8_A 118 ----EKAVIYSASKTY 129 (255)
T ss_dssp ----TCCEEEEEEEEE
T ss_pred ----CCEEEEECEEEE
T ss_conf ----905998432899
No 9
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane protein, structural protein; 2.70A {Staphylococcus epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Probab=1.00 E-value=1 Score=106.74 Aligned_cols=118 Identities=15% Similarity=0.172 Sum_probs=82.7
Q ss_pred CCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
Q ss_conf 96205999368999999799999999988397999984899906998314278865448874321224442178889911
Q 001413 351 LAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRAPE 430 (1082)
Q Consensus 351 lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepRaPe 430 (1082)
.|.|.|.||||| ++ ..+..++.|+++.+|| .+.+.|.|||...-|.+.+.+.
T Consensus 1 Mp~vSVIIp~yN---~~-~~L~~~L~Sll~Qt~~--~~EIIVVDDgStD~t~~il~~~---------------------- 52 (729)
T 3l7i_A 1 MNKLTIIVTYYN---AE-EYITGCLESIKQQRTQ--DFNLIIVNDGSTDQSKKLMDEA---------------------- 52 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCEEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHHHH----------------------
T ss_conf 966999997678---78-9999999999827789--8699999789987579999999----------------------
Q ss_pred HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCC
Q ss_conf 12100123234878803599999999999999999978777420587344333689989999888894201010046999
Q 001413 431 WYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGENGG 510 (1082)
Q Consensus 431 ~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~~g~ 510 (1082)
.+ .+
T Consensus 53 -----------------------------~~----------------------------------~~------------- 56 (729)
T 3l7i_A 53 -----------------------------IK----------------------------------DY------------- 56 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------------------------HH----------------------------------HC-------------
T ss_conf -----------------------------97----------------------------------47-------------
Q ss_pred CCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 78888987838999702599988675022569999860136798789994499987936999999984428999960799
Q 001413 511 LDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDPNLGKHVCY 590 (1082)
Q Consensus 511 ~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~Dp~~g~~v~~ 590 (1082)
=+++.|+..++..| .++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..+.++ ++.+
T Consensus 57 -------~~~i~~i~~~~n~G-----~~~arN~gi~~----A~gdyI~flD~Dd~-~~p~~l~~l~~~l~~~----d~v~ 115 (729)
T 3l7i_A 57 -------DKNIRFIDLDENSG-----HAHARNIALEE----VETPYFMFLDADDE-LASYAITFYLEKFNNT----DGLI 115 (729)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -------CCCEEEEECCCCCC-----HHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHCCC----CEEE
T ss_conf -------99889998888778-----79999999986----66998999889877-7846999999982379----9899
Q ss_pred EEC
Q ss_conf 904
Q 001413 591 VQF 593 (1082)
Q Consensus 591 VQ~ 593 (1082)
...
T Consensus 116 ~~~ 118 (729)
T 3l7i_A 116 API 118 (729)
T ss_dssp ---
T ss_pred EEE
T ss_conf 866
No 10
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=1.00 E-value=1 Score=103.15 Aligned_cols=111 Identities=17% Similarity=0.211 Sum_probs=84.7
Q ss_pred CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 99962059993689999997999999999883979999848999069983142788654488743212244421788899
Q 001413 349 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLTFEALSETSEFARKWVPFCKKYNIEPRA 428 (1082)
Q Consensus 349 ~~lp~VDvfV~t~dp~kEpp~v~~nTvls~la~DYP~~kl~~yvsDDG~~~ltf~al~Eaa~FA~~WvPFCkk~~IepRa 428 (1082)
+..|.|.|.||||| ++ ..+..++.|+++.+|| .+.++|.|||...-|.+.+.
T Consensus 2 ~~~p~vsViIp~yn---~~-~~l~~~l~Sl~~q~~~--~~eiIvvDd~S~d~t~~~~~---------------------- 53 (240)
T 3bcv_A 2 SLIPKVSVIVPIYN---VE-KYLDQCVQALLAQTLS--DIEIILIDDESPDNCPKICD---------------------- 53 (240)
T ss_dssp -CCCSEEEEEEESS---CT-TTHHHHHHHHHTCSSS--SEEEEEEECCCSSSHHHHHH----------------------
T ss_pred CCCCCEEEEEECCC---CH-HHHHHHHHHHHHCCCC--CEEEEEEECCCCCCHHHHHH----------------------
T ss_conf 99984899996689---77-8999999999957689--86999998999867899999----------------------
Q ss_pred CHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf 11121001232348788035999999999999999999787774205873443336899899998888942010100469
Q 001413 429 PEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKIRINGLVAKAQKIPEEGWVMQDGTPWPGNNTRDHPGMIQVFLGEN 508 (1082)
Q Consensus 429 Pe~YF~~~~d~~~~~~~~~f~~err~mkreYee~k~ri~~L~~~~~~~p~e~w~m~dgt~w~~~~~~dHp~iiqv~l~~~ 508 (1082)
++ .++
T Consensus 54 --------------------------------~~-------~~~------------------------------------ 58 (240)
T 3bcv_A 54 --------------------------------DY-------AAQ------------------------------------ 58 (240)
T ss_dssp --------------------------------HH-------HHH------------------------------------
T ss_pred --------------------------------HH-------HHH------------------------------------
T ss_conf --------------------------------99-------965------------------------------------
Q ss_pred CCCCCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 99788889878389997025999886750225699998601367987899944999879369999999844289
Q 001413 509 GGLDAEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFMMDP 582 (1082)
Q Consensus 509 g~~d~~~~~lP~lvYvsRekrpg~~hh~KAGalNallrvSav~tngp~il~lDcDh~~~~~~~Lr~amcff~Dp 582 (1082)
.|++.++.. +.. .+++|.|.+++. +.|+||+.+|+|.+ ..|++|.+.+..+.++
T Consensus 59 ---------~~~i~~i~~-~n~-----G~~~a~N~g~~~----a~g~~i~~lD~Dd~-~~~~~l~~l~~~~~~~ 112 (240)
T 3bcv_A 59 ---------YPNIKVIHK-KNA-----GLGMACNSGLDV----ATGEYVAFCDSDDY-VDSDMYMTMYNVAQKY 112 (240)
T ss_dssp ---------CSSEEEEEC-CCC-----CHHHHHHHHHHH----CCSSEEEECCTTCC-CCTTHHHHHHHHHHHH
T ss_pred ---------CCCEEEEEC-CCC-----CHHHHHHHHHHH----CCCCEEEEECCCCC-CCHHHHHHHHHHHHHC
T ss_conf ---------897899988-999-----949999999997----68999999879875-8889999999999846
Done!